Query 017664
Match_columns 368
No_of_seqs 236 out of 2646
Neff 10.0
Searched_HMMs 46136
Date Fri Mar 29 02:22:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017664.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017664hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1252 Ndh NADH dehydrogenase 100.0 1.8E-47 3.9E-52 346.6 28.6 328 15-349 2-374 (405)
2 COG1249 Lpd Pyruvate/2-oxoglut 100.0 3.9E-48 8.5E-53 359.8 21.4 342 13-365 1-411 (454)
3 PTZ00318 NADH dehydrogenase-li 100.0 4.7E-45 1E-49 344.2 31.2 329 13-348 7-390 (424)
4 PRK06116 glutathione reductase 100.0 7.7E-46 1.7E-50 353.0 23.4 340 13-365 1-407 (450)
5 TIGR01421 gluta_reduc_1 glutat 100.0 1E-45 2.3E-50 350.6 22.3 338 15-365 1-407 (450)
6 TIGR01424 gluta_reduc_2 glutat 100.0 2.4E-45 5.2E-50 348.5 23.9 338 16-365 2-403 (446)
7 PLN02507 glutathione reductase 100.0 3.5E-45 7.5E-50 350.2 25.1 342 14-366 23-441 (499)
8 PRK06467 dihydrolipoamide dehy 100.0 2.6E-45 5.6E-50 349.9 23.9 340 13-365 1-412 (471)
9 PRK05249 soluble pyridine nucl 100.0 4.3E-45 9.3E-50 349.2 25.0 342 14-366 3-411 (461)
10 PRK13512 coenzyme A disulfide 100.0 1.6E-44 3.4E-49 342.0 27.7 337 17-366 2-387 (438)
11 PRK08010 pyridine nucleotide-d 100.0 1.4E-44 2.9E-49 343.6 25.9 341 15-366 2-395 (441)
12 PRK06370 mercuric reductase; V 100.0 1.1E-44 2.3E-49 346.2 23.0 343 13-365 2-410 (463)
13 PRK07846 mycothione reductase; 100.0 2.3E-44 4.9E-49 341.3 24.6 339 16-365 1-402 (451)
14 TIGR01423 trypano_reduc trypan 100.0 1.8E-44 3.9E-49 343.2 22.7 342 15-366 2-429 (486)
15 TIGR03452 mycothione_red mycot 100.0 1.4E-43 3E-48 336.4 25.6 340 15-365 1-405 (452)
16 TIGR02053 MerA mercuric reduct 100.0 3.9E-44 8.4E-49 342.5 20.9 341 17-366 1-406 (463)
17 PRK06416 dihydrolipoamide dehy 100.0 8.9E-44 1.9E-48 340.1 23.1 338 15-366 3-410 (462)
18 PRK07818 dihydrolipoamide dehy 100.0 1.8E-43 3.9E-48 337.8 25.0 341 14-366 2-414 (466)
19 PLN02546 glutathione reductase 100.0 1.7E-43 3.6E-48 340.0 23.7 339 15-365 78-489 (558)
20 PRK07251 pyridine nucleotide-d 100.0 3.7E-43 8.1E-48 333.4 24.7 344 15-366 2-394 (438)
21 PRK06292 dihydrolipoamide dehy 100.0 3.5E-43 7.5E-48 336.0 24.0 341 15-366 2-408 (460)
22 TIGR03169 Nterm_to_SelD pyridi 100.0 2.6E-42 5.6E-47 320.6 29.0 327 18-356 1-359 (364)
23 PRK06115 dihydrolipoamide dehy 100.0 6.4E-43 1.4E-47 333.3 25.5 342 15-365 2-413 (466)
24 PRK14727 putative mercuric red 100.0 9.9E-43 2.2E-47 333.1 25.4 339 15-366 15-422 (479)
25 PRK14694 putative mercuric red 100.0 1.3E-42 2.8E-47 331.8 24.2 337 14-366 4-411 (468)
26 PRK09564 coenzyme A disulfide 100.0 5.1E-42 1.1E-46 326.8 27.1 337 18-366 2-393 (444)
27 PTZ00058 glutathione reductase 100.0 1.6E-42 3.5E-47 333.0 23.4 342 15-365 47-514 (561)
28 PRK07845 flavoprotein disulfid 100.0 9.6E-43 2.1E-47 332.1 20.8 339 16-366 1-414 (466)
29 PRK13748 putative mercuric red 100.0 3E-42 6.4E-47 337.3 24.6 337 15-366 97-504 (561)
30 PRK06327 dihydrolipoamide dehy 100.0 3.7E-42 8.1E-47 329.0 24.2 342 13-366 1-423 (475)
31 PRK05976 dihydrolipoamide dehy 100.0 5.5E-42 1.2E-46 328.1 23.5 341 13-366 1-420 (472)
32 PRK14989 nitrite reductase sub 100.0 2.6E-41 5.7E-46 338.2 27.3 337 16-365 3-373 (847)
33 TIGR01350 lipoamide_DH dihydro 100.0 2E-41 4.4E-46 324.1 24.0 340 16-366 1-409 (461)
34 PRK06912 acoL dihydrolipoamide 100.0 5.4E-41 1.2E-45 319.8 24.5 335 18-366 2-406 (458)
35 PTZ00153 lipoamide dehydrogena 100.0 3.1E-41 6.7E-46 328.1 21.7 280 79-365 248-607 (659)
36 TIGR01438 TGR thioredoxin and 100.0 4.3E-41 9.4E-46 320.8 22.1 343 16-366 2-426 (484)
37 PTZ00052 thioredoxin reductase 100.0 9.4E-41 2E-45 320.0 23.8 339 14-365 3-435 (499)
38 PRK09754 phenylpropionate diox 100.0 2.8E-39 6.1E-44 302.8 26.3 280 15-301 2-308 (396)
39 PRK04965 NADH:flavorubredoxin 100.0 1.4E-38 3E-43 296.5 26.3 276 17-300 3-300 (377)
40 KOG1335 Dihydrolipoamide dehyd 100.0 4.7E-39 1E-43 279.5 16.5 339 15-365 38-452 (506)
41 KOG0405 Pyridine nucleotide-di 100.0 1.1E-38 2.4E-43 273.9 15.7 354 1-365 1-429 (478)
42 TIGR02374 nitri_red_nirB nitri 100.0 3.6E-37 7.9E-42 308.9 25.9 275 19-300 1-299 (785)
43 KOG2495 NADH-dehydrogenase (ub 100.0 3.6E-36 7.9E-41 265.6 21.8 320 13-335 52-441 (491)
44 TIGR03385 CoA_CoA_reduc CoA-di 100.0 1.2E-35 2.5E-40 281.5 26.1 325 30-366 1-380 (427)
45 TIGR01292 TRX_reduct thioredox 100.0 1E-35 2.2E-40 269.4 22.7 273 17-303 1-300 (300)
46 PRK10262 thioredoxin reductase 100.0 2.3E-34 5E-39 262.6 20.2 281 13-306 3-317 (321)
47 TIGR01316 gltA glutamate synth 100.0 2.9E-34 6.3E-39 272.1 20.7 274 12-303 129-449 (449)
48 COG0492 TrxB Thioredoxin reduc 100.0 4.1E-34 8.9E-39 254.1 19.6 275 14-305 1-302 (305)
49 PRK12831 putative oxidoreducta 100.0 7.9E-34 1.7E-38 269.6 22.0 279 11-306 135-463 (464)
50 TIGR03143 AhpF_homolog putativ 100.0 2.6E-33 5.7E-38 272.0 23.9 280 13-306 1-311 (555)
51 PRK12770 putative glutamate sy 100.0 3.3E-33 7.2E-38 257.7 21.8 286 5-305 7-351 (352)
52 TIGR03140 AhpF alkyl hydropero 100.0 1E-33 2.2E-38 272.9 18.8 276 14-304 210-513 (515)
53 KOG1336 Monodehydroascorbate/f 100.0 2E-32 4.3E-37 246.5 25.7 277 16-300 74-381 (478)
54 PRK09853 putative selenate red 100.0 1.7E-32 3.7E-37 273.3 25.1 272 14-304 537-842 (1019)
55 PRK11749 dihydropyrimidine deh 100.0 1.1E-32 2.4E-37 262.7 22.1 278 13-307 137-455 (457)
56 PRK15317 alkyl hydroperoxide r 100.0 8E-33 1.7E-37 267.1 20.3 278 14-306 209-514 (517)
57 PRK12778 putative bifunctional 100.0 3.4E-32 7.5E-37 273.3 20.8 278 13-306 428-752 (752)
58 COG1251 NirB NAD(P)H-nitrite r 100.0 4.7E-32 1E-36 254.8 19.6 339 15-364 2-366 (793)
59 PRK12810 gltD glutamate syntha 100.0 3E-31 6.5E-36 253.3 22.6 282 13-307 140-468 (471)
60 PRK12779 putative bifunctional 100.0 3.5E-31 7.6E-36 267.9 24.1 278 14-307 304-630 (944)
61 PRK12814 putative NADPH-depend 100.0 4.3E-31 9.3E-36 260.4 20.5 277 14-308 191-505 (652)
62 TIGR03315 Se_ygfK putative sel 100.0 1.5E-30 3.3E-35 260.7 24.0 269 15-303 536-839 (1012)
63 KOG4716 Thioredoxin reductase 100.0 5.5E-32 1.2E-36 232.0 9.1 341 13-365 16-445 (503)
64 PRK12775 putative trifunctiona 100.0 4E-30 8.8E-35 262.4 22.6 279 15-307 429-758 (1006)
65 PRK12769 putative oxidoreducta 100.0 9.3E-30 2E-34 252.0 21.6 274 14-305 325-653 (654)
66 TIGR01318 gltD_gamma_fam gluta 100.0 3.3E-29 7.1E-34 238.4 21.4 271 15-304 140-466 (467)
67 TIGR01317 GOGAT_sm_gam glutama 100.0 6.5E-29 1.4E-33 237.3 21.7 280 15-307 142-482 (485)
68 PRK13984 putative oxidoreducta 100.0 2.7E-28 5.9E-33 240.2 21.1 278 13-305 280-603 (604)
69 PRK12809 putative oxidoreducta 100.0 6E-28 1.3E-32 238.1 21.5 275 14-306 308-637 (639)
70 PRK12771 putative glutamate sy 100.0 4.2E-27 9E-32 229.7 21.7 277 13-307 134-447 (564)
71 COG0446 HcaD Uncharacterized N 99.9 1.6E-25 3.4E-30 211.8 24.8 279 19-301 1-309 (415)
72 TIGR01372 soxA sarcosine oxida 99.9 1.1E-25 2.5E-30 231.1 25.1 272 15-305 162-473 (985)
73 KOG0404 Thioredoxin reductase 99.9 3.3E-26 7.1E-31 185.8 16.6 279 12-304 4-319 (322)
74 PLN02852 ferredoxin-NADP+ redu 99.9 1.3E-25 2.9E-30 211.6 20.3 283 13-305 23-423 (491)
75 KOG3851 Sulfide:quinone oxidor 99.9 2.4E-25 5.3E-30 189.9 19.4 314 14-336 37-391 (446)
76 KOG1346 Programmed cell death 99.9 2E-24 4.3E-29 190.3 16.3 285 13-301 175-518 (659)
77 COG3634 AhpF Alkyl hydroperoxi 99.9 1.6E-25 3.5E-30 193.1 7.8 273 14-303 209-514 (520)
78 PLN02172 flavin-containing mon 99.9 3.3E-24 7.1E-29 202.8 16.9 273 11-300 5-349 (461)
79 PRK06567 putative bifunctional 99.9 2.8E-20 6E-25 184.1 18.9 267 12-308 379-774 (1028)
80 PF00743 FMO-like: Flavin-bind 99.8 7.7E-21 1.7E-25 182.2 13.8 273 16-300 1-393 (531)
81 COG0493 GltD NADPH-dependent g 99.8 9.9E-21 2.1E-25 176.9 13.8 290 5-305 111-453 (457)
82 COG3486 IucD Lysine/ornithine 99.8 1.5E-18 3.3E-23 154.1 21.0 289 13-307 2-414 (436)
83 KOG0399 Glutamate synthase [Am 99.8 2E-20 4.3E-25 181.5 9.4 287 6-306 1774-2122(2142)
84 PF07992 Pyr_redox_2: Pyridine 99.8 9.3E-21 2E-25 161.2 -1.1 170 18-280 1-200 (201)
85 KOG2755 Oxidoreductase [Genera 99.8 1.3E-18 2.8E-23 145.0 10.9 252 18-279 1-322 (334)
86 PF13434 K_oxygenase: L-lysine 99.8 2.6E-18 5.6E-23 156.5 11.4 220 16-235 2-340 (341)
87 COG2072 TrkA Predicted flavopr 99.7 7E-16 1.5E-20 145.7 19.3 163 12-176 4-210 (443)
88 COG1148 HdrA Heterodisulfide r 99.7 4.2E-15 9.2E-20 134.4 19.3 195 102-305 298-546 (622)
89 PF13738 Pyr_redox_3: Pyridine 99.7 3.5E-17 7.6E-22 139.4 5.7 154 20-175 1-201 (203)
90 KOG1399 Flavin-containing mono 99.7 2.2E-16 4.8E-21 147.1 11.0 219 13-245 3-278 (448)
91 KOG1800 Ferredoxin/adrenodoxin 99.6 4.1E-14 9E-19 124.4 14.7 279 14-304 18-407 (468)
92 PRK05329 anaerobic glycerol-3- 99.6 3E-13 6.6E-18 126.2 20.1 159 142-302 218-419 (422)
93 PTZ00188 adrenodoxin reductase 99.6 8.9E-14 1.9E-18 129.7 16.4 273 15-304 38-440 (506)
94 COG2081 Predicted flavoprotein 99.4 6.5E-12 1.4E-16 112.5 12.2 68 181-248 110-188 (408)
95 PF00070 Pyr_redox: Pyridine n 99.4 3.9E-12 8.5E-17 90.8 8.3 78 141-220 1-80 (80)
96 COG4529 Uncharacterized protei 99.3 4.8E-10 1E-14 103.1 18.2 159 16-174 1-231 (474)
97 PF03486 HI0933_like: HI0933-l 99.1 1.1E-09 2.4E-14 102.1 12.7 55 182-236 109-166 (409)
98 TIGR00292 thiazole biosynthesi 99.1 3.4E-09 7.4E-14 92.8 14.4 119 183-303 101-253 (254)
99 PRK04176 ribulose-1,5-biphosph 99.1 7.6E-09 1.6E-13 90.9 15.7 121 183-305 105-256 (257)
100 TIGR03378 glycerol3P_GlpB glyc 99.0 2.7E-08 5.9E-13 92.1 15.7 143 153-299 237-418 (419)
101 PF01266 DAO: FAD dependent ox 98.9 1.7E-08 3.7E-13 93.4 12.9 63 181-245 146-211 (358)
102 PRK05192 tRNA uridine 5-carbox 98.9 1.5E-07 3.1E-12 91.1 19.3 45 258-307 350-395 (618)
103 COG0644 FixC Dehydrogenases (f 98.9 2.2E-08 4.9E-13 94.1 13.6 42 15-56 2-44 (396)
104 PRK09897 hypothetical protein; 98.9 9.6E-09 2.1E-13 98.9 11.2 145 16-161 1-213 (534)
105 COG0579 Predicted dehydrogenas 98.9 2.1E-08 4.6E-13 92.8 12.3 63 183-246 154-220 (429)
106 PRK06847 hypothetical protein; 98.9 1.8E-08 3.9E-13 94.2 11.7 55 183-237 108-164 (375)
107 TIGR00136 gidA glucose-inhibit 98.9 1.2E-07 2.7E-12 91.4 17.2 48 258-308 348-395 (617)
108 PRK12842 putative succinate de 98.8 1.4E-09 2.9E-14 107.0 2.8 98 137-236 155-275 (574)
109 COG2509 Uncharacterized FAD-de 98.8 8.7E-08 1.9E-12 87.4 13.8 210 9-243 11-236 (486)
110 PRK13977 myosin-cross-reactive 98.8 4.7E-08 1E-12 93.5 12.6 44 11-54 17-65 (576)
111 PRK05335 tRNA (uracil-5-)-meth 98.8 3.7E-08 8E-13 91.1 11.1 48 258-308 321-368 (436)
112 PRK10157 putative oxidoreducta 98.8 1.3E-07 2.8E-12 89.8 14.4 53 183-235 109-163 (428)
113 PRK08773 2-octaprenyl-3-methyl 98.8 8.3E-08 1.8E-12 90.3 12.5 55 183-237 114-170 (392)
114 PRK10015 oxidoreductase; Provi 98.8 1.5E-07 3.3E-12 89.2 13.9 38 15-52 4-42 (429)
115 PRK08401 L-aspartate oxidase; 98.8 2.1E-07 4.5E-12 89.4 14.9 49 253-302 310-365 (466)
116 PLN02463 lycopene beta cyclase 98.8 3.8E-08 8.2E-13 93.2 9.5 105 14-118 26-171 (447)
117 COG1233 Phytoene dehydrogenase 98.7 1.1E-07 2.5E-12 91.5 12.8 53 182-234 224-279 (487)
118 COG0029 NadB Aspartate oxidase 98.7 9.7E-07 2.1E-11 81.7 18.0 49 254-303 342-397 (518)
119 TIGR01292 TRX_reduct thioredox 98.7 9.5E-08 2.1E-12 86.3 11.4 96 141-239 2-115 (300)
120 PRK08163 salicylate hydroxylas 98.7 2.3E-07 5E-12 87.4 14.3 54 183-236 110-166 (396)
121 PRK09754 phenylpropionate diox 98.7 1.6E-07 3.4E-12 88.4 12.0 99 139-237 3-113 (396)
122 KOG2820 FAD-dependent oxidored 98.7 1.5E-07 3.2E-12 82.5 10.7 191 11-235 2-211 (399)
123 PRK07333 2-octaprenyl-6-methox 98.7 2E-07 4.4E-12 87.9 12.7 55 183-237 112-168 (403)
124 TIGR01377 soxA_mon sarcosine o 98.7 1.5E-07 3.3E-12 88.0 11.6 52 183-235 146-199 (380)
125 PRK07608 ubiquinone biosynthes 98.7 4.7E-07 1E-11 85.0 14.8 53 183-236 112-167 (388)
126 COG0654 UbiH 2-polyprenyl-6-me 98.7 1.9E-07 4E-12 87.6 11.8 53 183-235 105-161 (387)
127 TIGR00137 gid_trmFO tRNA:m(5)U 98.7 7.4E-07 1.6E-11 83.1 15.4 47 259-308 321-367 (433)
128 TIGR02032 GG-red-SF geranylger 98.7 3.6E-07 7.7E-12 82.2 12.9 54 183-236 92-148 (295)
129 PTZ00363 rab-GDP dissociation 98.7 5.8E-07 1.3E-11 84.9 14.4 56 182-237 232-291 (443)
130 TIGR01373 soxB sarcosine oxida 98.6 6E-07 1.3E-11 84.9 14.4 52 183-235 184-239 (407)
131 PTZ00383 malate:quinone oxidor 98.6 1.8E-07 4E-12 89.6 10.8 62 183-246 212-282 (497)
132 TIGR00275 flavoprotein, HI0933 98.6 4.1E-07 9E-12 85.5 13.1 70 164-235 86-159 (400)
133 PF01134 GIDA: Glucose inhibit 98.6 8.8E-08 1.9E-12 87.8 8.2 45 259-306 347-391 (392)
134 PRK05714 2-octaprenyl-3-methyl 98.6 2.4E-07 5.3E-12 87.5 11.3 54 183-236 113-168 (405)
135 PRK06481 fumarate reductase fl 98.6 3E-07 6.4E-12 89.2 11.8 57 183-239 191-255 (506)
136 PRK08013 oxidoreductase; Provi 98.6 4E-07 8.6E-12 85.8 12.4 54 183-236 112-168 (400)
137 TIGR02734 crtI_fam phytoene de 98.6 8.5E-07 1.8E-11 86.2 15.0 54 182-235 219-275 (502)
138 PRK11883 protoporphyrinogen ox 98.6 4.9E-07 1.1E-11 86.7 13.0 38 17-54 1-41 (451)
139 PRK11728 hydroxyglutarate oxid 98.6 1.6E-06 3.5E-11 81.5 16.2 54 182-236 149-204 (393)
140 PRK08020 ubiF 2-octaprenyl-3-m 98.6 4.1E-07 8.9E-12 85.5 11.6 54 183-236 113-169 (391)
141 PRK07233 hypothetical protein; 98.6 1.6E-07 3.4E-12 89.6 8.6 54 182-235 198-253 (434)
142 PRK09564 coenzyme A disulfide 98.6 2.4E-07 5.3E-12 88.6 9.8 100 140-239 1-118 (444)
143 PRK06134 putative FAD-binding 98.6 1.6E-08 3.6E-13 99.4 1.8 41 12-52 8-49 (581)
144 PRK07843 3-ketosteroid-delta-1 98.6 3E-08 6.5E-13 97.1 3.1 102 139-242 160-276 (557)
145 TIGR03169 Nterm_to_SelD pyridi 98.6 2.6E-07 5.5E-12 86.0 9.2 98 141-239 1-110 (364)
146 PRK06184 hypothetical protein; 98.6 6.3E-07 1.4E-11 87.1 12.1 52 184-235 111-167 (502)
147 PRK11259 solA N-methyltryptoph 98.6 1.1E-06 2.3E-11 82.2 13.3 53 182-235 149-203 (376)
148 COG1232 HemY Protoporphyrinoge 98.6 5.1E-07 1.1E-11 84.4 10.8 38 17-54 1-41 (444)
149 TIGR02733 desat_CrtD C-3',4' d 98.6 5.5E-07 1.2E-11 87.3 11.6 55 181-235 231-293 (492)
150 TIGR03364 HpnW_proposed FAD de 98.6 8.7E-07 1.9E-11 82.5 12.4 50 183-235 146-196 (365)
151 PRK06834 hypothetical protein; 98.6 4.3E-07 9.2E-12 87.6 10.4 55 183-237 101-157 (488)
152 PRK12416 protoporphyrinogen ox 98.6 6.2E-07 1.3E-11 86.3 11.6 49 183-233 227-277 (463)
153 PRK12409 D-amino acid dehydrog 98.5 3.6E-07 7.9E-12 86.4 9.8 53 183-235 198-257 (410)
154 PRK13800 putative oxidoreducta 98.5 1.1E-06 2.3E-11 90.9 13.9 51 253-305 361-411 (897)
155 PF01494 FAD_binding_3: FAD bi 98.5 3.6E-07 7.7E-12 84.4 9.5 54 183-236 112-172 (356)
156 TIGR01790 carotene-cycl lycope 98.5 4.8E-07 1E-11 85.0 10.2 99 18-116 1-141 (388)
157 PRK07494 2-octaprenyl-6-methox 98.5 3.4E-07 7.3E-12 86.0 9.1 36 14-49 5-41 (388)
158 PRK07190 hypothetical protein; 98.5 9.3E-07 2E-11 85.1 11.6 52 184-235 111-164 (487)
159 PF05834 Lycopene_cycl: Lycope 98.5 3.8E-07 8.3E-12 85.0 8.4 100 18-117 1-143 (374)
160 PRK05257 malate:quinone oxidor 98.5 2.8E-06 6E-11 81.8 14.4 64 182-246 183-255 (494)
161 PRK08849 2-octaprenyl-3-methyl 98.5 5.3E-07 1.1E-11 84.5 9.1 33 16-48 3-36 (384)
162 PF13450 NAD_binding_8: NAD(P) 98.5 1.6E-07 3.4E-12 64.3 4.0 36 21-56 1-37 (68)
163 PRK04965 NADH:flavorubredoxin 98.5 1.1E-06 2.3E-11 82.3 10.7 98 140-238 3-113 (377)
164 PRK13512 coenzyme A disulfide 98.5 1.1E-06 2.3E-11 83.9 10.8 99 140-238 2-119 (438)
165 PRK07588 hypothetical protein; 98.5 2.4E-06 5.2E-11 80.3 13.1 52 184-236 105-158 (391)
166 PRK07364 2-octaprenyl-6-methox 98.5 8.4E-07 1.8E-11 84.1 10.0 37 13-49 15-52 (415)
167 TIGR03329 Phn_aa_oxid putative 98.5 4.1E-06 9E-11 80.4 14.6 53 182-235 183-236 (460)
168 COG1231 Monoamine oxidase [Ami 98.5 1.9E-06 4.1E-11 79.2 11.4 46 14-59 5-51 (450)
169 COG3075 GlpB Anaerobic glycero 98.5 3E-06 6.5E-11 74.2 11.9 124 180-303 256-417 (421)
170 TIGR01988 Ubi-OHases Ubiquinon 98.4 2.8E-06 6.1E-11 79.6 13.0 54 183-236 107-163 (385)
171 PRK14989 nitrite reductase sub 98.4 9.5E-07 2.1E-11 90.1 10.3 100 140-239 4-116 (847)
172 TIGR01320 mal_quin_oxido malat 98.4 2.7E-06 5.8E-11 81.7 12.8 63 182-245 178-248 (483)
173 PRK06175 L-aspartate oxidase; 98.4 7.7E-07 1.7E-11 84.5 9.0 38 14-51 2-39 (433)
174 PLN02697 lycopene epsilon cycl 98.4 5.8E-07 1.3E-11 86.7 8.0 102 15-116 107-248 (529)
175 PRK09126 hypothetical protein; 98.4 8.3E-07 1.8E-11 83.5 8.8 34 16-49 3-37 (392)
176 PRK13339 malate:quinone oxidor 98.4 3.7E-06 8.1E-11 80.5 13.2 63 183-246 185-256 (497)
177 PRK11101 glpA sn-glycerol-3-ph 98.4 5.9E-06 1.3E-10 80.9 14.9 54 182-235 149-210 (546)
178 PRK08274 tricarballylate dehyd 98.4 1E-06 2.3E-11 84.7 9.6 53 182-234 131-190 (466)
179 PRK08850 2-octaprenyl-6-methox 98.4 9.4E-07 2E-11 83.5 9.1 35 13-47 1-36 (405)
180 COG2907 Predicted NAD/FAD-bind 98.4 1.2E-05 2.7E-10 71.0 15.0 43 15-57 7-49 (447)
181 PRK01747 mnmC bifunctional tRN 98.4 2E-06 4.3E-11 86.3 11.7 54 182-236 408-463 (662)
182 COG1635 THI4 Ribulose 1,5-bisp 98.4 1.9E-07 4.1E-12 77.1 3.4 37 16-52 30-67 (262)
183 PRK08132 FAD-dependent oxidore 98.4 5.3E-06 1.1E-10 81.5 14.3 40 11-50 18-58 (547)
184 PRK00711 D-amino acid dehydrog 98.4 7E-06 1.5E-10 77.8 14.6 52 183-235 202-256 (416)
185 TIGR01813 flavo_cyto_c flavocy 98.4 2.6E-06 5.6E-11 81.4 11.6 57 182-238 130-195 (439)
186 TIGR02374 nitri_red_nirB nitri 98.4 1.1E-06 2.4E-11 89.4 9.2 98 142-239 1-111 (785)
187 TIGR01789 lycopene_cycl lycope 98.4 1.9E-06 4.2E-11 80.0 10.0 98 18-116 1-138 (370)
188 PF01946 Thi4: Thi4 family; PD 98.4 3E-07 6.4E-12 76.4 3.6 38 15-52 16-54 (230)
189 TIGR02023 BchP-ChlP geranylger 98.4 1.3E-06 2.9E-11 81.9 8.5 31 17-47 1-32 (388)
190 COG0665 DadA Glycine/D-amino a 98.4 9.2E-07 2E-11 83.0 7.4 53 182-235 156-211 (387)
191 PRK07236 hypothetical protein; 98.4 2.4E-06 5.1E-11 80.2 10.0 36 14-49 4-40 (386)
192 PRK05732 2-octaprenyl-6-methox 98.4 1.6E-06 3.5E-11 81.6 8.8 33 15-47 2-38 (395)
193 PTZ00318 NADH dehydrogenase-li 98.4 3E-06 6.5E-11 80.4 10.6 98 138-238 9-127 (424)
194 PF13738 Pyr_redox_3: Pyridine 98.3 2.1E-06 4.6E-11 72.8 8.6 90 143-234 1-136 (203)
195 PRK07045 putative monooxygenas 98.3 2.2E-06 4.7E-11 80.5 9.1 37 14-50 3-40 (388)
196 TIGR03140 AhpF alkyl hydropero 98.3 5E-06 1.1E-10 80.9 11.4 98 138-237 211-324 (515)
197 COG1252 Ndh NADH dehydrogenase 98.3 3.6E-06 7.7E-11 77.7 9.6 99 139-238 3-113 (405)
198 PLN02612 phytoene desaturase 98.3 9.1E-06 2E-10 79.8 13.0 52 182-233 308-363 (567)
199 PRK15317 alkyl hydroperoxide r 98.3 5.3E-06 1.2E-10 80.8 11.3 97 139-237 211-323 (517)
200 PRK06475 salicylate hydroxylas 98.3 6.4E-06 1.4E-10 77.7 11.4 53 183-235 108-166 (400)
201 TIGR01984 UbiH 2-polyprenyl-6- 98.3 2.4E-06 5.2E-11 80.1 8.4 32 18-49 1-34 (382)
202 KOG0029 Amine oxidase [Seconda 98.3 9.4E-07 2E-11 84.5 5.2 47 11-57 10-57 (501)
203 PF13454 NAD_binding_9: FAD-NA 98.3 2.6E-06 5.7E-11 69.0 7.0 35 80-114 117-155 (156)
204 PRK05868 hypothetical protein; 98.2 5.2E-06 1.1E-10 77.4 9.5 34 16-49 1-35 (372)
205 PRK06753 hypothetical protein; 98.2 3.6E-06 7.7E-11 78.6 8.2 33 17-49 1-34 (373)
206 PF04820 Trp_halogenase: Trypt 98.2 1.9E-06 4.2E-11 82.1 6.0 53 183-236 155-211 (454)
207 PRK06996 hypothetical protein; 98.2 1.9E-05 4.2E-10 74.4 12.6 52 183-234 116-172 (398)
208 PRK07208 hypothetical protein; 98.2 1.7E-06 3.7E-11 83.6 5.2 42 13-54 1-43 (479)
209 PLN02985 squalene monooxygenas 98.1 1.1E-05 2.3E-10 78.3 9.4 36 13-48 40-76 (514)
210 PRK06183 mhpA 3-(3-hydroxyphen 98.1 1.2E-05 2.6E-10 78.9 9.9 36 14-49 8-44 (538)
211 PLN00093 geranylgeranyl diphos 98.1 3.3E-06 7.2E-11 80.4 5.4 35 15-49 38-73 (450)
212 PF07992 Pyr_redox_2: Pyridine 98.1 3.8E-06 8.3E-11 71.0 5.1 97 141-239 1-125 (201)
213 KOG0685 Flavin-containing amin 98.1 5.3E-05 1.1E-09 70.0 12.4 45 13-57 18-64 (498)
214 PLN02172 flavin-containing mon 98.1 5.5E-05 1.2E-09 72.3 13.1 100 138-239 9-178 (461)
215 COG1249 Lpd Pyruvate/2-oxoglut 98.1 1.3E-05 2.7E-10 75.8 8.4 99 15-122 172-278 (454)
216 COG0578 GlpA Glycerol-3-phosph 98.1 4.3E-06 9.3E-11 79.4 4.9 63 181-244 163-232 (532)
217 KOG1336 Monodehydroascorbate/f 98.1 1.8E-05 4E-10 72.9 8.7 100 138-237 73-182 (478)
218 PRK05945 sdhA succinate dehydr 98.0 2.3E-05 5E-10 77.3 9.9 53 182-234 135-195 (575)
219 COG3380 Predicted NAD/FAD-depe 98.0 5.1E-06 1.1E-10 70.9 4.4 36 17-52 2-38 (331)
220 PRK12779 putative bifunctional 98.0 1.7E-05 3.8E-10 81.9 9.2 90 138-235 305-403 (944)
221 KOG2665 Predicted FAD-dependen 98.0 2.7E-05 5.9E-10 68.0 8.7 51 186-236 200-257 (453)
222 PRK07803 sdhA succinate dehydr 98.0 4.6E-05 1E-09 75.8 11.6 35 16-50 8-43 (626)
223 PF06039 Mqo: Malate:quinone o 98.0 2E-05 4.3E-10 72.9 8.2 81 183-264 182-271 (488)
224 TIGR01812 sdhA_frdA_Gneg succi 98.0 5.4E-05 1.2E-09 74.7 12.0 52 183-234 130-189 (566)
225 TIGR03219 salicylate_mono sali 98.0 3.7E-05 8.1E-10 72.9 10.3 34 17-50 1-36 (414)
226 PRK06452 sdhA succinate dehydr 98.0 2.3E-05 4.9E-10 77.1 9.0 51 183-233 137-195 (566)
227 PRK09853 putative selenate red 98.0 3.4E-05 7.4E-10 79.1 10.3 90 138-237 538-636 (1019)
228 PLN02661 Putative thiazole syn 98.0 0.00015 3.3E-09 65.8 13.3 164 139-305 92-329 (357)
229 PRK11749 dihydropyrimidine deh 98.0 2E-05 4.3E-10 75.7 8.1 89 138-235 139-236 (457)
230 PLN02576 protoporphyrinogen ox 98.0 8.1E-06 1.8E-10 79.3 5.4 45 10-54 6-52 (496)
231 PLN02268 probable polyamine ox 98.0 7.1E-06 1.5E-10 78.3 4.6 39 17-55 1-40 (435)
232 COG0445 GidA Flavin-dependent 98.0 4.5E-06 9.8E-11 78.1 3.0 45 260-307 352-396 (621)
233 PRK07251 pyridine nucleotide-d 98.0 2.8E-05 6.1E-10 74.3 8.4 97 16-121 157-258 (438)
234 PRK06185 hypothetical protein; 97.9 9.5E-06 2.1E-10 76.7 4.9 37 13-49 3-40 (407)
235 PLN02852 ferredoxin-NADP+ redu 97.9 3.2E-05 7E-10 73.9 8.4 92 138-236 25-126 (491)
236 PRK07236 hypothetical protein; 97.9 7.4E-05 1.6E-09 70.1 10.5 96 139-236 6-154 (386)
237 TIGR02360 pbenz_hydroxyl 4-hyd 97.9 1.1E-05 2.3E-10 75.8 4.7 34 16-49 2-36 (390)
238 PF12831 FAD_oxidored: FAD dep 97.9 8.9E-06 1.9E-10 77.3 4.0 35 18-52 1-36 (428)
239 TIGR00562 proto_IX_ox protopor 97.9 1.1E-05 2.5E-10 77.5 4.8 39 16-54 2-45 (462)
240 PLN02568 polyamine oxidase 97.9 1.4E-05 3.1E-10 77.7 5.3 43 13-55 2-50 (539)
241 PF01134 GIDA: Glucose inhibit 97.9 0.00011 2.3E-09 67.7 10.6 91 141-234 1-150 (392)
242 TIGR01350 lipoamide_DH dihydro 97.9 4.7E-05 1E-09 73.3 8.6 96 16-120 170-273 (461)
243 TIGR01316 gltA glutamate synth 97.9 3.4E-05 7.3E-10 73.8 7.4 91 138-237 132-232 (449)
244 TIGR03385 CoA_CoA_reduc CoA-di 97.9 2.8E-05 6E-10 74.0 6.7 96 16-119 137-236 (427)
245 TIGR02028 ChlP geranylgeranyl 97.9 1.3E-05 2.9E-10 75.4 4.4 33 17-49 1-34 (398)
246 PRK11445 putative oxidoreducta 97.9 1.4E-05 3.1E-10 73.9 4.6 34 16-49 1-34 (351)
247 PRK12770 putative glutamate sy 97.9 4.3E-05 9.4E-10 70.7 7.7 96 138-235 17-129 (352)
248 PLN02463 lycopene beta cyclase 97.9 0.00011 2.3E-09 70.0 10.4 94 140-236 29-169 (447)
249 PRK06416 dihydrolipoamide dehy 97.9 5E-05 1.1E-09 73.1 8.4 96 16-120 172-276 (462)
250 PRK05976 dihydrolipoamide dehy 97.8 6.6E-05 1.4E-09 72.4 8.9 97 16-121 180-286 (472)
251 COG1635 THI4 Ribulose 1,5-bisp 97.8 0.00032 6.9E-09 58.4 11.5 162 139-304 30-260 (262)
252 TIGR00031 UDP-GALP_mutase UDP- 97.8 1.7E-05 3.6E-10 73.4 4.5 38 16-53 1-39 (377)
253 COG3349 Uncharacterized conser 97.8 1.8E-05 3.9E-10 74.2 4.6 43 17-59 1-44 (485)
254 KOG2853 Possible oxidoreductas 97.8 0.00029 6.2E-09 62.4 11.6 41 15-55 85-130 (509)
255 PRK06126 hypothetical protein; 97.8 2.1E-05 4.5E-10 77.3 5.2 36 14-49 5-41 (545)
256 PRK12266 glpD glycerol-3-phosp 97.8 2.1E-05 4.6E-10 76.4 5.1 54 182-235 155-215 (508)
257 PRK12831 putative oxidoreducta 97.8 6.5E-05 1.4E-09 72.1 8.4 92 138-237 139-242 (464)
258 PRK06617 2-octaprenyl-6-methox 97.8 1.9E-05 4.1E-10 73.8 4.6 32 16-47 1-33 (374)
259 PRK08243 4-hydroxybenzoate 3-m 97.8 2E-05 4.3E-10 74.1 4.7 34 16-49 2-36 (392)
260 PRK08244 hypothetical protein; 97.8 1.9E-05 4.1E-10 76.6 4.7 34 16-49 2-36 (493)
261 PRK10262 thioredoxin reductase 97.8 0.00021 4.5E-09 65.3 11.1 97 138-238 5-119 (321)
262 PRK13369 glycerol-3-phosphate 97.8 2.4E-05 5.2E-10 76.0 5.1 54 182-235 155-214 (502)
263 TIGR03143 AhpF_homolog putativ 97.8 0.00016 3.4E-09 71.1 10.9 95 140-238 5-116 (555)
264 TIGR01424 gluta_reduc_2 glutat 97.8 0.00016 3.5E-09 69.2 10.7 94 141-239 4-145 (446)
265 COG1251 NirB NAD(P)H-nitrite r 97.8 0.00013 2.9E-09 70.9 9.6 103 139-241 3-118 (793)
266 TIGR01318 gltD_gamma_fam gluta 97.8 6.4E-05 1.4E-09 72.2 7.6 91 138-237 140-239 (467)
267 PRK08294 phenol 2-monooxygenas 97.8 3E-05 6.5E-10 77.2 5.5 37 13-49 29-67 (634)
268 PRK07846 mycothione reductase; 97.8 9.3E-05 2E-09 70.8 8.3 96 16-121 166-267 (451)
269 TIGR01789 lycopene_cycl lycope 97.8 0.00019 4.1E-09 66.8 10.1 94 141-236 1-138 (370)
270 PRK07538 hypothetical protein; 97.8 2.7E-05 5.8E-10 73.8 4.5 33 17-49 1-34 (413)
271 COG0446 HcaD Uncharacterized N 97.8 6.2E-05 1.3E-09 71.1 6.9 94 16-117 136-238 (415)
272 PLN02676 polyamine oxidase 97.7 2.3E-05 4.9E-10 75.6 3.9 47 9-55 19-67 (487)
273 KOG2415 Electron transfer flav 97.7 2.4E-05 5.2E-10 70.8 3.6 39 15-53 75-120 (621)
274 PRK12778 putative bifunctional 97.7 8.4E-05 1.8E-09 75.8 8.0 91 139-237 431-531 (752)
275 PRK05249 soluble pyridine nucl 97.7 0.00011 2.3E-09 70.8 8.4 96 16-120 175-276 (461)
276 PRK01438 murD UDP-N-acetylmura 97.7 0.00015 3.3E-09 70.1 9.4 83 138-243 15-97 (480)
277 TIGR01989 COQ6 Ubiquinone bios 97.7 3.1E-05 6.8E-10 73.9 4.4 31 17-47 1-36 (437)
278 PRK06327 dihydrolipoamide dehy 97.7 0.00012 2.5E-09 70.8 8.3 97 16-121 183-289 (475)
279 TIGR02730 carot_isom carotene 97.7 3.3E-05 7.2E-10 74.9 4.5 54 182-235 229-285 (493)
280 PRK09897 hypothetical protein; 97.7 0.00032 7E-09 68.0 11.0 97 140-236 2-166 (534)
281 PTZ00367 squalene epoxidase; P 97.7 4.2E-05 9.2E-10 74.7 5.0 34 15-48 32-66 (567)
282 KOG2404 Fumarate reductase, fl 97.7 0.00015 3.2E-09 63.7 7.7 40 18-57 11-51 (477)
283 PRK06912 acoL dihydrolipoamide 97.7 0.00017 3.7E-09 69.3 9.0 97 16-121 170-273 (458)
284 TIGR01317 GOGAT_sm_gam glutama 97.7 0.00011 2.4E-09 71.0 7.7 88 139-235 143-239 (485)
285 TIGR02731 phytoene_desat phyto 97.7 3.7E-05 8E-10 73.8 4.3 53 182-234 213-274 (453)
286 PLN02661 Putative thiazole syn 97.7 4.1E-05 8.8E-10 69.4 4.2 36 16-51 92-129 (357)
287 PRK12775 putative trifunctiona 97.7 0.00012 2.7E-09 76.3 8.2 89 139-235 430-528 (1006)
288 PRK14694 putative mercuric red 97.7 0.00014 3E-09 70.1 8.0 95 16-121 178-278 (468)
289 TIGR02053 MerA mercuric reduct 97.7 0.00016 3.4E-09 69.6 8.3 96 16-120 166-270 (463)
290 TIGR03315 Se_ygfK putative sel 97.7 0.00019 4.2E-09 74.0 9.1 88 139-236 537-633 (1012)
291 PLN02927 antheraxanthin epoxid 97.7 4.8E-05 1E-09 75.1 4.6 35 14-48 79-114 (668)
292 TIGR03452 mycothione_red mycot 97.7 0.00016 3.4E-09 69.4 8.1 96 16-121 169-270 (452)
293 PLN02529 lysine-specific histo 97.7 5.7E-05 1.2E-09 75.5 5.2 42 13-54 157-199 (738)
294 PF00890 FAD_binding_2: FAD bi 97.6 4.6E-05 1E-09 72.3 4.3 56 182-237 141-204 (417)
295 COG0492 TrxB Thioredoxin reduc 97.6 0.00049 1.1E-08 61.9 10.6 95 140-238 4-117 (305)
296 PRK08010 pyridine nucleotide-d 97.6 0.00035 7.6E-09 66.8 10.3 97 140-239 4-134 (441)
297 PRK12810 gltD glutamate syntha 97.6 0.00015 3.2E-09 69.9 7.5 89 138-235 142-239 (471)
298 TIGR02485 CobZ_N-term precorri 97.6 6.8E-05 1.5E-09 71.5 5.1 60 182-241 123-189 (432)
299 PRK06116 glutathione reductase 97.6 0.00014 3.1E-09 69.7 7.3 97 16-121 167-270 (450)
300 PRK06370 mercuric reductase; V 97.6 0.00022 4.8E-09 68.6 8.6 96 16-120 171-275 (463)
301 TIGR01421 gluta_reduc_1 glutat 97.6 0.00016 3.6E-09 69.2 7.6 96 16-120 166-269 (450)
302 PRK07845 flavoprotein disulfid 97.6 0.00046 1E-08 66.4 10.2 95 140-237 2-152 (466)
303 PLN02487 zeta-carotene desatur 97.6 9.6E-05 2.1E-09 72.2 5.6 53 183-235 296-359 (569)
304 KOG3851 Sulfide:quinone oxidor 97.6 4.3E-05 9.3E-10 66.9 2.7 105 138-243 38-152 (446)
305 PRK07818 dihydrolipoamide dehy 97.6 0.00023 5.1E-09 68.5 8.0 96 16-120 172-277 (466)
306 PF00743 FMO-like: Flavin-bind 97.6 0.00061 1.3E-08 66.2 10.7 133 140-277 2-193 (531)
307 COG1206 Gid NAD(FAD)-utilizing 97.6 0.0014 3.1E-08 57.9 11.8 48 258-308 325-372 (439)
308 PLN02507 glutathione reductase 97.6 0.00024 5.1E-09 68.9 7.9 96 16-120 203-304 (499)
309 PRK08244 hypothetical protein; 97.6 0.00063 1.4E-08 66.1 10.8 95 140-236 3-159 (493)
310 PRK12834 putative FAD-binding 97.6 8.4E-05 1.8E-09 73.0 4.7 36 13-48 1-37 (549)
311 COG0562 Glf UDP-galactopyranos 97.5 8.8E-05 1.9E-09 65.1 4.2 39 16-54 1-40 (374)
312 PTZ00052 thioredoxin reductase 97.5 0.00025 5.4E-09 68.8 7.8 96 16-121 182-283 (499)
313 PF00070 Pyr_redox: Pyridine n 97.5 0.00012 2.6E-09 51.9 4.2 34 18-51 1-35 (80)
314 PRK07121 hypothetical protein; 97.5 0.00011 2.3E-09 71.4 5.2 37 15-51 19-56 (492)
315 PRK08641 sdhA succinate dehydr 97.5 8.6E-05 1.9E-09 73.4 4.6 52 253-305 355-412 (589)
316 PRK09126 hypothetical protein; 97.5 0.00084 1.8E-08 63.1 11.1 96 140-237 4-168 (392)
317 PLN02328 lysine-specific histo 97.5 0.00011 2.3E-09 74.1 5.1 41 14-54 236-277 (808)
318 COG2072 TrkA Predicted flavopr 97.5 0.0023 4.9E-08 61.0 13.8 132 139-278 8-186 (443)
319 TIGR01984 UbiH 2-polyprenyl-6- 97.5 0.00087 1.9E-08 62.8 11.0 94 141-236 1-162 (382)
320 PRK05868 hypothetical protein; 97.5 0.00074 1.6E-08 63.0 10.4 96 140-237 2-161 (372)
321 PRK07395 L-aspartate oxidase; 97.5 0.00012 2.5E-09 71.8 5.1 37 14-50 7-43 (553)
322 PRK07057 sdhA succinate dehydr 97.5 0.00011 2.5E-09 72.5 5.0 35 14-48 10-45 (591)
323 PRK12769 putative oxidoreducta 97.5 0.0003 6.5E-09 70.6 8.0 90 138-236 326-424 (654)
324 PF05834 Lycopene_cycl: Lycope 97.5 0.0011 2.5E-08 61.8 11.4 95 141-236 1-142 (374)
325 PF13454 NAD_binding_9: FAD-NA 97.5 0.0017 3.6E-08 52.6 10.8 92 143-234 1-155 (156)
326 PF00732 GMC_oxred_N: GMC oxid 97.5 9.6E-05 2.1E-09 66.7 3.9 62 185-246 196-268 (296)
327 PRK12839 hypothetical protein; 97.5 0.00014 3E-09 71.6 5.2 44 10-53 2-46 (572)
328 TIGR02732 zeta_caro_desat caro 97.5 0.00011 2.3E-09 70.9 4.2 36 18-53 1-37 (474)
329 PRK06467 dihydrolipoamide dehy 97.5 0.00064 1.4E-08 65.5 9.6 93 140-237 5-149 (471)
330 PRK12837 3-ketosteroid-delta-1 97.5 0.00012 2.6E-09 71.3 4.5 37 15-52 6-43 (513)
331 PRK12809 putative oxidoreducta 97.5 0.00033 7.1E-09 70.1 7.5 90 138-236 309-407 (639)
332 PRK12835 3-ketosteroid-delta-1 97.4 0.00017 3.7E-09 71.2 5.4 39 13-51 8-47 (584)
333 PTZ00188 adrenodoxin reductase 97.4 0.00059 1.3E-08 64.7 8.7 91 138-236 38-138 (506)
334 PRK08071 L-aspartate oxidase; 97.4 0.00014 3.1E-09 70.6 4.7 35 15-49 2-36 (510)
335 PRK12814 putative NADPH-depend 97.4 0.00038 8.3E-09 69.7 7.5 90 138-236 192-290 (652)
336 TIGR01790 carotene-cycl lycope 97.4 0.0012 2.7E-08 61.9 10.5 93 141-236 1-141 (388)
337 PRK06753 hypothetical protein; 97.4 0.001 2.2E-08 62.1 9.9 94 141-236 2-152 (373)
338 PRK09078 sdhA succinate dehydr 97.4 0.00018 3.8E-09 71.3 4.8 35 15-49 11-46 (598)
339 TIGR01438 TGR thioredoxin and 97.4 0.00051 1.1E-08 66.3 7.9 95 16-120 180-283 (484)
340 PRK07804 L-aspartate oxidase; 97.4 0.00019 4E-09 70.3 4.9 37 14-50 14-51 (541)
341 KOG1399 Flavin-containing mono 97.4 0.0027 6E-08 60.0 12.4 135 139-278 6-197 (448)
342 PRK07364 2-octaprenyl-6-methox 97.4 0.0015 3.3E-08 61.9 10.9 96 139-236 18-181 (415)
343 PRK07045 putative monooxygenas 97.4 0.0017 3.6E-08 61.0 11.0 95 140-236 6-165 (388)
344 PRK13748 putative mercuric red 97.4 0.00048 1E-08 68.0 7.7 94 16-120 270-369 (561)
345 PRK06115 dihydrolipoamide dehy 97.4 0.0015 3.1E-08 63.0 10.7 94 140-237 4-149 (466)
346 TIGR01423 trypano_reduc trypan 97.4 0.00044 9.6E-09 66.7 7.1 97 16-121 187-293 (486)
347 PTZ00139 Succinate dehydrogena 97.4 0.00019 4.1E-09 71.3 4.7 35 15-49 28-63 (617)
348 PRK14727 putative mercuric red 97.4 0.00053 1.1E-08 66.3 7.6 94 16-120 188-287 (479)
349 PRK08205 sdhA succinate dehydr 97.4 0.0002 4.3E-09 70.8 4.6 35 15-49 4-38 (583)
350 PRK12844 3-ketosteroid-delta-1 97.3 0.00023 5E-09 69.9 4.9 38 15-52 5-43 (557)
351 KOG2614 Kynurenine 3-monooxyge 97.3 0.00022 4.7E-09 65.0 4.2 34 16-49 2-36 (420)
352 PLN02464 glycerol-3-phosphate 97.3 0.00023 5E-09 70.8 4.8 55 181-235 231-295 (627)
353 PRK08255 salicylyl-CoA 5-hydro 97.3 0.0002 4.4E-09 73.0 4.4 34 17-50 1-37 (765)
354 PRK12845 3-ketosteroid-delta-1 97.3 0.00028 6.1E-09 69.3 5.0 40 13-53 13-53 (564)
355 PRK07573 sdhA succinate dehydr 97.3 0.00027 5.8E-09 70.5 4.8 35 15-49 34-69 (640)
356 PLN00128 Succinate dehydrogena 97.3 0.00027 5.9E-09 70.3 4.8 34 16-49 50-84 (635)
357 PRK06854 adenylylsulfate reduc 97.3 0.00022 4.7E-09 70.8 4.1 45 260-305 389-433 (608)
358 KOG2311 NAD/FAD-utilizing prot 97.3 0.00024 5.1E-09 65.6 3.9 45 260-307 381-425 (679)
359 KOG2755 Oxidoreductase [Genera 97.3 0.00076 1.6E-08 57.6 6.6 95 141-238 1-106 (334)
360 PRK09077 L-aspartate oxidase; 97.3 0.00033 7.1E-09 68.6 5.0 50 253-303 353-409 (536)
361 PRK08958 sdhA succinate dehydr 97.3 0.00033 7.1E-09 69.2 5.0 35 15-49 6-41 (588)
362 PLN02697 lycopene epsilon cycl 97.3 0.002 4.3E-08 62.5 10.2 94 140-236 109-248 (529)
363 PRK06263 sdhA succinate dehydr 97.3 0.00027 5.9E-09 69.3 4.4 52 253-305 348-405 (543)
364 PRK05192 tRNA uridine 5-carbox 97.3 0.0024 5.1E-08 62.5 10.6 92 140-234 5-155 (618)
365 PRK07494 2-octaprenyl-6-methox 97.2 0.003 6.5E-08 59.3 11.0 94 140-236 8-167 (388)
366 PLN03000 amine oxidase 97.2 0.00038 8.3E-09 70.3 5.1 42 14-55 182-224 (881)
367 PRK06069 sdhA succinate dehydr 97.2 0.00032 7E-09 69.3 4.5 52 253-304 352-415 (577)
368 PRK06183 mhpA 3-(3-hydroxyphen 97.2 0.0023 5.1E-08 62.8 10.5 95 139-235 10-173 (538)
369 TIGR02462 pyranose_ox pyranose 97.2 0.00032 7E-09 67.9 4.2 38 17-54 1-39 (544)
370 KOG4254 Phytoene desaturase [C 97.2 0.0011 2.3E-08 61.0 7.2 65 182-246 264-332 (561)
371 PTZ00058 glutathione reductase 97.2 0.00078 1.7E-08 66.0 6.8 97 16-121 237-341 (561)
372 PRK06292 dihydrolipoamide dehy 97.2 0.00094 2E-08 64.3 7.3 95 16-120 169-272 (460)
373 PRK02106 choline dehydrogenase 97.2 0.0004 8.7E-09 68.5 4.8 59 189-247 208-273 (560)
374 PRK12771 putative glutamate sy 97.2 0.0012 2.6E-08 65.2 8.1 90 137-236 135-234 (564)
375 PRK08275 putative oxidoreducta 97.2 0.00035 7.6E-09 68.7 4.2 51 254-306 357-407 (554)
376 PRK13984 putative oxidoreducta 97.2 0.0011 2.4E-08 66.0 7.6 89 138-235 282-379 (604)
377 COG0493 GltD NADPH-dependent g 97.2 0.00094 2E-08 63.4 6.7 89 138-235 122-219 (457)
378 KOG0404 Thioredoxin reductase 97.2 0.0029 6.4E-08 52.8 8.6 95 139-237 8-125 (322)
379 TIGR01372 soxA sarcosine oxida 97.1 0.0037 8E-08 65.7 11.4 98 139-238 163-288 (985)
380 TIGR00551 nadB L-aspartate oxi 97.1 0.00047 1E-08 66.7 4.4 50 253-303 333-389 (488)
381 PRK08626 fumarate reductase fl 97.1 0.00046 1E-08 69.0 4.4 53 253-305 372-431 (657)
382 PRK08849 2-octaprenyl-3-methyl 97.1 0.0043 9.4E-08 58.2 10.8 96 140-237 4-168 (384)
383 KOG1276 Protoporphyrinogen oxi 97.1 0.00063 1.4E-08 62.2 4.8 41 14-54 9-52 (491)
384 PLN02815 L-aspartate oxidase 97.1 0.0005 1.1E-08 67.8 4.5 50 253-303 377-433 (594)
385 PF01946 Thi4: Thi4 family; PD 97.1 0.0056 1.2E-07 51.4 9.7 97 139-237 17-166 (230)
386 TIGR02061 aprA adenosine phosp 97.1 0.00049 1.1E-08 68.0 4.2 45 260-305 400-444 (614)
387 KOG2844 Dimethylglycine dehydr 97.1 0.002 4.3E-08 62.1 8.0 66 167-236 174-243 (856)
388 PRK05732 2-octaprenyl-6-methox 97.1 0.0052 1.1E-07 57.8 11.0 97 140-236 4-169 (395)
389 PRK08850 2-octaprenyl-6-methox 97.1 0.0054 1.2E-07 58.0 11.0 96 139-236 4-168 (405)
390 TIGR03219 salicylate_mono sali 97.1 0.0036 7.8E-08 59.4 9.7 95 141-236 2-159 (414)
391 PRK06185 hypothetical protein; 97.0 0.0061 1.3E-07 57.6 11.1 96 139-236 6-169 (407)
392 PTZ00153 lipoamide dehydrogena 97.0 0.0025 5.4E-08 63.5 8.6 98 16-121 312-432 (659)
393 PTZ00306 NADH-dependent fumara 97.0 0.00067 1.4E-08 72.3 4.9 38 15-52 408-446 (1167)
394 PRK06617 2-octaprenyl-6-methox 97.0 0.0054 1.2E-07 57.3 10.4 94 141-237 3-161 (374)
395 PF12831 FAD_oxidored: FAD dep 97.0 0.00062 1.3E-08 64.8 4.1 103 141-248 1-159 (428)
396 PRK07512 L-aspartate oxidase; 97.0 0.00061 1.3E-08 66.3 4.1 50 253-303 341-397 (513)
397 TIGR01176 fum_red_Fp fumarate 97.0 0.0006 1.3E-08 67.2 4.1 52 253-305 357-415 (580)
398 PRK09231 fumarate reductase fl 97.0 0.00059 1.3E-08 67.4 3.9 52 253-305 358-416 (582)
399 KOG0399 Glutamate synthase [Am 97.0 0.0019 4.2E-08 65.6 7.3 89 138-235 1784-1881(2142)
400 KOG1346 Programmed cell death 97.0 0.0011 2.3E-08 60.4 5.1 103 140-243 179-319 (659)
401 KOG1298 Squalene monooxygenase 97.0 0.00081 1.8E-08 60.6 4.3 34 15-48 44-78 (509)
402 COG1053 SdhA Succinate dehydro 97.0 0.00081 1.8E-08 65.6 4.7 38 13-50 3-41 (562)
403 PLN02976 amine oxidase 97.0 0.00079 1.7E-08 70.9 4.7 40 15-54 692-732 (1713)
404 PRK08243 4-hydroxybenzoate 3-m 97.0 0.0081 1.8E-07 56.5 11.1 95 140-236 3-163 (392)
405 PLN02785 Protein HOTHEAD 96.9 0.0012 2.7E-08 65.0 5.2 36 14-49 53-88 (587)
406 TIGR00136 gidA glucose-inhibit 96.9 0.01 2.2E-07 58.1 11.1 93 141-236 2-154 (617)
407 PF06100 Strep_67kDa_ant: Stre 96.9 0.004 8.6E-08 58.7 8.0 55 182-236 207-274 (500)
408 PLN02546 glutathione reductase 96.9 0.0026 5.6E-08 62.4 6.9 96 16-120 252-354 (558)
409 COG2303 BetA Choline dehydroge 96.9 0.0012 2.7E-08 64.5 4.7 62 186-247 207-277 (542)
410 PRK12843 putative FAD-binding 96.9 0.0016 3.5E-08 64.4 5.5 39 15-53 15-54 (578)
411 PRK06567 putative bifunctional 96.8 0.0031 6.7E-08 64.5 7.3 34 138-173 382-415 (1028)
412 TIGR00137 gid_trmFO tRNA:m(5)U 96.8 0.0042 9.1E-08 58.3 7.5 34 141-176 2-35 (433)
413 PRK11445 putative oxidoreducta 96.8 0.015 3.3E-07 53.7 11.1 93 141-236 3-157 (351)
414 TIGR01811 sdhA_Bsu succinate d 96.8 0.0011 2.3E-08 65.8 3.6 51 253-304 370-426 (603)
415 TIGR02023 BchP-ChlP geranylger 96.7 0.013 2.8E-07 55.0 10.6 92 141-235 2-154 (388)
416 TIGR01989 COQ6 Ubiquinone bios 96.7 0.014 3.1E-07 55.7 10.7 49 188-236 123-183 (437)
417 COG3573 Predicted oxidoreducta 96.7 0.0023 4.9E-08 56.8 4.7 36 14-49 3-39 (552)
418 PRK06126 hypothetical protein; 96.6 0.014 3.1E-07 57.4 10.4 34 139-174 7-40 (545)
419 TIGR01810 betA choline dehydro 96.6 0.002 4.3E-08 63.2 4.0 88 187-276 199-301 (532)
420 COG0445 GidA Flavin-dependent 96.5 0.012 2.5E-07 56.0 7.9 93 140-235 5-157 (621)
421 COG4529 Uncharacterized protei 96.5 0.024 5.2E-07 53.2 10.0 37 140-176 2-39 (474)
422 TIGR02360 pbenz_hydroxyl 4-hyd 96.4 0.028 6.1E-07 52.8 10.5 95 140-236 3-163 (390)
423 PRK07538 hypothetical protein; 96.4 0.022 4.7E-07 54.0 9.8 94 141-236 2-165 (413)
424 KOG1335 Dihydrolipoamide dehyd 96.4 0.0033 7.2E-08 56.8 3.7 101 16-125 211-323 (506)
425 TIGR02028 ChlP geranylgeranyl 96.4 0.035 7.7E-07 52.3 10.9 38 268-305 270-310 (398)
426 KOG2495 NADH-dehydrogenase (ub 96.3 0.03 6.6E-07 51.5 9.4 98 138-238 54-172 (491)
427 COG3380 Predicted NAD/FAD-depe 96.3 0.022 4.7E-07 49.3 7.9 98 141-241 3-165 (331)
428 COG1148 HdrA Heterodisulfide r 96.2 0.016 3.4E-07 54.2 7.2 73 139-213 124-209 (622)
429 COG1004 Ugd Predicted UDP-gluc 96.2 0.016 3.5E-07 52.9 7.1 33 17-49 1-34 (414)
430 KOG2960 Protein involved in th 96.2 0.0013 2.8E-08 54.4 0.2 35 16-50 76-113 (328)
431 KOG3855 Monooxygenase involved 96.2 0.0066 1.4E-07 55.4 4.4 36 12-47 32-72 (481)
432 COG3634 AhpF Alkyl hydroperoxi 96.1 0.016 3.5E-07 51.8 6.5 98 138-235 210-324 (520)
433 PRK08255 salicylyl-CoA 5-hydro 96.1 0.026 5.6E-07 57.9 8.9 35 141-175 2-36 (765)
434 PRK08401 L-aspartate oxidase; 96.1 0.066 1.4E-06 51.6 11.1 32 140-173 2-33 (466)
435 PF00890 FAD_binding_2: FAD bi 96.0 0.052 1.1E-06 51.5 10.2 33 141-175 1-33 (417)
436 KOG1238 Glucose dehydrogenase/ 96.0 0.0077 1.7E-07 58.3 4.3 38 13-50 54-93 (623)
437 PF00996 GDI: GDP dissociation 95.9 0.0078 1.7E-07 56.7 3.9 46 13-58 1-47 (438)
438 PRK14106 murD UDP-N-acetylmura 95.9 0.049 1.1E-06 52.3 9.4 83 138-242 4-86 (450)
439 PLN00093 geranylgeranyl diphos 95.8 0.11 2.4E-06 49.8 11.2 34 139-174 39-72 (450)
440 PLN02927 antheraxanthin epoxid 95.7 0.094 2E-06 52.3 10.5 36 137-174 79-114 (668)
441 PRK08294 phenol 2-monooxygenas 95.6 0.099 2.1E-06 52.4 10.5 35 139-174 32-66 (634)
442 KOG2852 Possible oxidoreductas 95.6 0.0061 1.3E-07 53.0 1.6 45 10-54 4-55 (380)
443 KOG1800 Ferredoxin/adrenodoxin 95.5 0.078 1.7E-06 48.2 8.4 90 139-236 20-120 (468)
444 PLN02985 squalene monooxygenas 95.5 0.16 3.4E-06 49.6 11.4 33 139-173 43-75 (514)
445 PRK12266 glpD glycerol-3-phosp 95.5 0.1 2.2E-06 50.9 10.0 33 140-174 7-39 (508)
446 PRK13369 glycerol-3-phosphate 95.4 0.12 2.5E-06 50.4 10.2 33 140-174 7-39 (502)
447 KOG2311 NAD/FAD-utilizing prot 95.4 0.055 1.2E-06 50.6 7.2 31 140-172 29-59 (679)
448 PRK06854 adenylylsulfate reduc 95.3 0.029 6.3E-07 55.9 5.6 34 16-49 11-47 (608)
449 PRK01438 murD UDP-N-acetylmura 95.2 0.026 5.6E-07 54.7 4.7 34 15-48 15-49 (480)
450 PF13241 NAD_binding_7: Putati 95.2 0.022 4.8E-07 42.4 3.3 34 15-48 6-40 (103)
451 PF13450 NAD_binding_8: NAD(P) 95.2 0.045 9.7E-07 37.2 4.6 32 144-177 1-32 (68)
452 TIGR00551 nadB L-aspartate oxi 95.2 0.18 3.9E-06 49.0 10.4 52 184-235 130-188 (488)
453 TIGR01470 cysG_Nterm siroheme 95.1 0.094 2E-06 44.4 7.4 79 138-241 8-87 (205)
454 TIGR01176 fum_red_Fp fumarate 95.1 0.25 5.4E-06 49.0 11.4 48 188-235 138-194 (580)
455 COG0569 TrkA K+ transport syst 95.1 0.026 5.7E-07 48.5 4.0 33 17-49 1-34 (225)
456 KOG0042 Glycerol-3-phosphate d 95.0 0.011 2.4E-07 55.8 1.6 35 15-49 66-101 (680)
457 PF01210 NAD_Gly3P_dh_N: NAD-d 95.0 0.031 6.6E-07 45.2 4.0 31 18-48 1-32 (157)
458 TIGR01470 cysG_Nterm siroheme 94.9 0.041 8.8E-07 46.6 4.6 34 15-48 8-42 (205)
459 PRK02705 murD UDP-N-acetylmura 94.8 0.031 6.7E-07 53.8 4.2 32 18-49 2-34 (459)
460 PRK07573 sdhA succinate dehydr 94.7 0.28 6.2E-06 49.2 10.8 48 187-234 175-230 (640)
461 PRK07121 hypothetical protein; 94.6 0.33 7.2E-06 47.2 10.8 51 184-234 179-237 (492)
462 PRK06719 precorrin-2 dehydroge 94.5 0.062 1.3E-06 43.4 4.6 34 14-47 11-45 (157)
463 PF01488 Shikimate_DH: Shikima 94.5 0.35 7.7E-06 37.9 8.8 77 138-236 11-87 (135)
464 TIGR02730 carot_isom carotene 94.5 0.097 2.1E-06 50.9 6.7 37 17-53 1-38 (493)
465 PTZ00139 Succinate dehydrogena 94.5 0.39 8.5E-06 48.0 11.0 51 183-233 167-226 (617)
466 PRK08275 putative oxidoreducta 94.4 0.085 1.8E-06 52.1 6.2 34 16-49 9-45 (554)
467 TIGR02352 thiamin_ThiO glycine 94.4 0.098 2.1E-06 47.8 6.3 54 181-235 136-192 (337)
468 COG0029 NadB Aspartate oxidase 94.4 0.27 5.9E-06 46.4 9.0 47 188-234 139-194 (518)
469 PF13434 K_oxygenase: L-lysine 94.4 0.081 1.7E-06 48.7 5.6 98 141-239 4-162 (341)
470 PRK02705 murD UDP-N-acetylmura 94.4 0.17 3.7E-06 48.7 8.0 85 141-242 2-86 (459)
471 PRK06718 precorrin-2 dehydroge 94.3 0.27 5.9E-06 41.5 8.2 74 138-236 9-82 (202)
472 PF02852 Pyr_redox_dim: Pyridi 94.3 0.007 1.5E-07 45.7 -1.4 47 317-365 8-67 (110)
473 KOG2960 Protein involved in th 94.3 0.34 7.3E-06 40.5 8.2 36 138-173 75-110 (328)
474 COG2081 Predicted flavoprotein 94.2 0.13 2.8E-06 47.2 6.3 35 140-176 4-38 (408)
475 PF01494 FAD_binding_3: FAD bi 94.1 0.11 2.4E-06 47.7 6.0 35 141-177 3-37 (356)
476 KOG2614 Kynurenine 3-monooxyge 94.1 0.31 6.8E-06 44.9 8.5 33 140-174 3-35 (420)
477 PRK06718 precorrin-2 dehydroge 94.0 0.087 1.9E-06 44.5 4.6 33 15-47 9-42 (202)
478 TIGR03862 flavo_PP4765 unchara 94.0 0.24 5.2E-06 46.0 7.8 65 171-236 73-141 (376)
479 PRK14106 murD UDP-N-acetylmura 93.9 0.076 1.6E-06 51.0 4.7 34 15-48 4-38 (450)
480 COG0240 GpsA Glycerol-3-phosph 93.7 0.18 4E-06 45.3 6.2 34 17-50 2-36 (329)
481 PRK06475 salicylate hydroxylas 93.7 0.14 3E-06 48.3 5.9 56 140-197 3-59 (400)
482 TIGR03197 MnmC_Cterm tRNA U-34 93.7 0.11 2.3E-06 48.8 5.0 54 181-235 134-189 (381)
483 PF03721 UDPG_MGDP_dh_N: UDP-g 93.6 0.078 1.7E-06 44.1 3.5 33 17-49 1-34 (185)
484 TIGR03376 glycerol3P_DH glycer 93.6 0.27 5.8E-06 45.1 7.3 63 139-210 138-200 (342)
485 KOG4405 GDP dissociation inhib 93.5 0.084 1.8E-06 48.4 3.8 47 13-59 5-52 (547)
486 PRK07395 L-aspartate oxidase; 93.5 0.57 1.2E-05 46.2 9.9 51 184-234 136-195 (553)
487 COG2509 Uncharacterized FAD-de 93.4 0.11 2.4E-06 48.4 4.5 46 255-303 438-483 (486)
488 PF02737 3HCDH_N: 3-hydroxyacy 93.4 0.083 1.8E-06 43.7 3.4 31 18-48 1-32 (180)
489 PF01262 AlaDh_PNT_C: Alanine 93.3 0.11 2.4E-06 42.4 4.0 34 15-48 19-53 (168)
490 PF01488 Shikimate_DH: Shikima 93.3 0.17 3.7E-06 39.7 4.8 34 15-48 11-46 (135)
491 PRK07530 3-hydroxybutyryl-CoA 93.2 0.12 2.6E-06 46.5 4.3 37 13-49 1-38 (292)
492 PRK06847 hypothetical protein; 93.0 0.22 4.9E-06 46.3 6.1 36 139-176 4-39 (375)
493 PRK05562 precorrin-2 dehydroge 92.9 0.43 9.4E-06 40.7 7.1 73 138-235 24-96 (223)
494 PRK01710 murD UDP-N-acetylmura 92.9 0.65 1.4E-05 44.7 9.2 83 138-242 13-95 (458)
495 PF04820 Trp_halogenase: Trypt 92.9 0.14 3.1E-06 49.1 4.6 35 141-175 1-36 (454)
496 PRK06184 hypothetical protein; 92.8 0.21 4.5E-06 48.7 5.8 35 140-176 4-38 (502)
497 COG0654 UbiH 2-polyprenyl-6-me 92.8 0.22 4.8E-06 46.7 5.8 57 139-197 2-60 (387)
498 TIGR00518 alaDH alanine dehydr 92.7 0.14 3.1E-06 47.6 4.2 34 15-48 166-200 (370)
499 COG1232 HemY Protoporphyrinoge 92.7 0.19 4.1E-06 47.6 5.0 37 140-176 1-37 (444)
500 PRK07804 L-aspartate oxidase; 92.6 0.21 4.6E-06 49.1 5.6 50 253-303 357-413 (541)
No 1
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=100.00 E-value=1.8e-47 Score=346.59 Aligned_cols=328 Identities=29% Similarity=0.391 Sum_probs=259.1
Q ss_pred CCCcEEEECCChHHHHHHHHhhc---CCcEEEEcCCCceeeeccceeeeecccccccceeecccccC---ceeEEEeEEE
Q 017664 15 EKKKVVVIGGGVGGSLLAYHIQS---FADVVLIDEKEYFEITWASLRAVVEPSFAVRSVINHGDYLS---NVKIVVSTAV 88 (368)
Q Consensus 15 ~~~~vvIIGaG~aGl~aA~~L~~---g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 88 (368)
.+++|||||||++|+.+|..|.+ +.+|+|||+++++.+.+.......+..-..+...++++.+. +++++++++.
T Consensus 2 ~~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl~~plL~eva~g~l~~~~i~~p~~~~~~~~~~v~~~~~~V~ 81 (405)
T COG1252 2 MKKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHLFTPLLYEVATGTLSESEIAIPLRALLRKSGNVQFVQGEVT 81 (405)
T ss_pred CCceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCccccchhhhhhhcCCCChhheeccHHHHhcccCceEEEEEEEE
Confidence 46789999999999999999975 38999999999987765443333332222333444444433 4899999999
Q ss_pred Eeec--cEEEecCCeEEEecEEEEecCCCCCCCCch--------HHHHHHHHHHHH-------HHh------cCCeEEEE
Q 017664 89 SITD--TEVVTAGGQTFVYDYVVVATGHVESVPKSR--------TERLSQYEKDFE-------KVK------SANSVLIV 145 (368)
Q Consensus 89 ~~~~--~~v~~~~g~~~~~d~lvlAtG~~~~~p~~~--------~~~~~~~~~~~~-------~~~------~~~~v~Vv 145 (368)
.+|. ++|.+.++..+.||+||+|+|+.+..++++ .+.+++..+... ... ...+++|+
T Consensus 82 ~ID~~~k~V~~~~~~~i~YD~LVvalGs~~~~fgi~G~~E~a~~lks~edA~~ir~~l~~~fe~a~~~~~~~~~lti~Iv 161 (405)
T COG1252 82 DIDRDAKKVTLADLGEISYDYLVVALGSETNYFGIPGAAEYAFGLKTLEDALRLRRHLLEAFEKASQEEDDRALLTIVIV 161 (405)
T ss_pred EEcccCCEEEeCCCccccccEEEEecCCcCCcCCCCCHHHhCCCCCCHHHHHHHHHHHHHHHHHhhccccccceeEEEEE
Confidence 9985 489998878899999999999995544432 122333322211 111 12379999
Q ss_pred cCchhHHHHHHHHhhhCC-----------CCeEEEEecCcccccccCchhHHHHHHHHHcCCcEEEecceeeecccCCCe
Q 017664 146 GGGPTGVELAGEIAVDFP-----------DKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVTLNTISDGL 214 (368)
Q Consensus 146 G~g~~~~e~a~~l~~~~~-----------~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~ 214 (368)
|+|++|+|+|.+|.++.. ..+|+++++.++++|.++++++++.++.|+++||++++++.|++++.+ .
T Consensus 162 GgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~ILp~~~~~l~~~a~~~L~~~GV~v~l~~~Vt~v~~~--~ 239 (405)
T COG1252 162 GGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRILPMFPPKLSKYAERALEKLGVEVLLGTPVTEVTPD--G 239 (405)
T ss_pred CCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchhccCCCHHHHHHHHHHHHHCCCEEEcCCceEEECCC--c
Confidence 999999999999886422 238999999999999999999999999999999999999999977755 7
Q ss_pred EEcCCCc-EEecCEEEEccCCCCCchhhhccccccccCCCCcEEeCCCeeecCCCCeEEecccCCCCc----cchHHHHH
Q 017664 215 IETSSGE-TIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITDIPE----IKQGYLAQ 289 (368)
Q Consensus 215 v~~~~g~-~i~~d~vi~a~G~~p~~~~~~~~~l~~~~~~~g~i~vd~~~~~~~~~~ifa~GD~~~~~~----~~~~~~a~ 289 (368)
+.+.+|+ +|++|.+||++|.+++ +++++. .+.+.|++|++.||+++|++++|||||+|||+..+. |++++.|.
T Consensus 240 v~~~~g~~~I~~~tvvWaaGv~a~-~~~~~l-~~~e~dr~Grl~V~~~L~~~~~~~IFa~GD~A~~~~~~p~P~tAQ~A~ 317 (405)
T COG1252 240 VTLKDGEEEIPADTVVWAAGVRAS-PLLKDL-SGLETDRRGRLVVNPTLQVPGHPDIFAAGDCAAVIDPRPVPPTAQAAH 317 (405)
T ss_pred EEEccCCeeEecCEEEEcCCCcCC-hhhhhc-ChhhhccCCCEEeCCCcccCCCCCeEEEeccccCCCCCCCCChhHHHH
Confidence 8888887 4999999999999975 466652 123678889999999999999999999999998754 67999999
Q ss_pred HHHHHHHHHHHHHHcCCCCCCccccccCCCeEEEeecCCcceeEecCccccCccceeeec
Q 017664 290 KHALVTAKNLKKLMMGRNKGTMATYKPGYPIALVSLGRREGVAHFPFLTISGRIPGWIKS 349 (368)
Q Consensus 290 ~~g~~aa~~i~~~l~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~k~ 349 (368)
+||+.+|+||.+.+.|++ +.+|.+.....++++|...|++......+.|..++++|.
T Consensus 318 Qqg~~~a~ni~~~l~g~~---l~~f~y~~~Gtl~~lG~~~av~~~g~~~l~G~~a~~~k~ 374 (405)
T COG1252 318 QQGEYAAKNIKARLKGKP---LKPFKYKDKGTLASLGDFSAVADLGGVKLKGFLAWLLKR 374 (405)
T ss_pred HHHHHHHHHHHHHhcCCC---CCCCcccceEEEEEccCCceeEEecceeeccHHHHHHHH
Confidence 999999999999999974 456776677899999999999998666677777766553
No 2
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=100.00 E-value=3.9e-48 Score=359.79 Aligned_cols=342 Identities=25% Similarity=0.360 Sum_probs=267.6
Q ss_pred CCCCCcEEEECCChHHHHHHHHhhc-CCcEEEEcCCCceeeecc---ceee---------------e---ec----c-cc
Q 017664 13 LVEKKKVVVIGGGVGGSLLAYHIQS-FADVVLIDEKEYFEITWA---SLRA---------------V---VE----P-SF 65 (368)
Q Consensus 13 ~~~~~~vvIIGaG~aGl~aA~~L~~-g~~v~lie~~~~~~~~~~---~~~~---------------~---~~----~-~~ 65 (368)
|+.++|+||||+||||..||.++++ |.+|+++|+.+.+|+... .+.. . .+ . .+
T Consensus 1 ~~~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~~lGGtCln~GCIPsK~Ll~~a~~~~~~~~~~~~~Gi~~~~~~i 80 (454)
T COG1249 1 MMKEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERLGGTCLNVGCIPSKALLHAAEVIEEARHAAKEYGISAEVPKI 80 (454)
T ss_pred CCccccEEEECCCHHHHHHHHHHHhCCCCEEEEeecCCcCceEEeeCccccHHHHHHHHHHHHHhhcccccceecCCCCc
Confidence 4568999999999999999999984 888999999976653321 1100 0 00 0 01
Q ss_pred cccceeeccc------------c--cCceeEEEeEEEEeeccEEEecC--CeEEEecEEEEecCCCCCCCC---chHHHH
Q 017664 66 AVRSVINHGD------------Y--LSNVKIVVSTAVSITDTEVVTAG--GQTFVYDYVVVATGHVESVPK---SRTERL 126 (368)
Q Consensus 66 ~~~~~~~~~~------------~--~~~~~~~~~~~~~~~~~~v~~~~--g~~~~~d~lvlAtG~~~~~p~---~~~~~~ 126 (368)
....+..+.+ + ..+++++.+.+.++++++|...+ .++++++++|||||++|..|+ ++...+
T Consensus 81 d~~~~~~~k~~v~~~~~~~~~~l~~~~~V~vi~G~a~f~~~~~v~V~~~~~~~~~a~~iiIATGS~p~~~~~~~~~~~~~ 160 (454)
T COG1249 81 DFEKLLARKDKVVRLLTGGVEGLLKKNGVDVIRGEARFVDPHTVEVTGEDKETITADNIIIATGSRPRIPPGPGIDGARI 160 (454)
T ss_pred CHHHHHHHHHHHHHHHhhhHHHHHhhCCCEEEEEEEEECCCCEEEEcCCCceEEEeCEEEEcCCCCCcCCCCCCCCCCeE
Confidence 1111111110 1 12789999999999999887766 488999999999999987765 444445
Q ss_pred HHHHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHcCCcEEEecceee
Q 017664 127 SQYEKDFEKVKSANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVT 206 (368)
Q Consensus 127 ~~~~~~~~~~~~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~ 206 (368)
.+..........+++++|||+|++|+|+|..+++ .|.+||++++.++++|.+|+++++.+.+.|++.|++++++++++
T Consensus 161 ~~s~~~l~~~~lP~~lvIiGgG~IGlE~a~~~~~--LG~~VTiie~~~~iLp~~D~ei~~~~~~~l~~~gv~i~~~~~v~ 238 (454)
T COG1249 161 LDSSDALFLLELPKSLVIVGGGYIGLEFASVFAA--LGSKVTVVERGDRILPGEDPEISKELTKQLEKGGVKILLNTKVT 238 (454)
T ss_pred EechhhcccccCCCEEEEECCCHHHHHHHHHHHH--cCCcEEEEecCCCCCCcCCHHHHHHHHHHHHhCCeEEEccceEE
Confidence 5555544444679999999999999999999984 79999999999999999999999999999999999999999999
Q ss_pred ecccCCC--eEEcCCCc--EEecCEEEEccCCCCCchhhhccccccccCCCCcEEeCCCeeecCCCCeEEecccCCCCcc
Q 017664 207 LNTISDG--LIETSSGE--TIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITDIPEI 282 (368)
Q Consensus 207 ~i~~~~~--~v~~~~g~--~i~~d~vi~a~G~~p~~~~~~~~~l~~~~~~~g~i~vd~~~~~~~~~~ifa~GD~~~~~~~ 282 (368)
.++..++ .+.+++|+ ++++|.+++|+|++||++-+..+.++++++++|+|.||+.+|| +.|||||+|||++.+.
T Consensus 239 ~~~~~~~~v~v~~~~g~~~~~~ad~vLvAiGR~Pn~~~LgLe~~Gv~~~~rg~I~VD~~~~T-nvp~IyA~GDV~~~~~- 316 (454)
T COG1249 239 AVEKKDDGVLVTLEDGEGGTIEADAVLVAIGRKPNTDGLGLENAGVELDDRGFIKVDDQMTT-NVPGIYAIGDVIGGPM- 316 (454)
T ss_pred EEEecCCeEEEEEecCCCCEEEeeEEEEccCCccCCCCCChhhcCceECCCCCEEeCCcccc-CCCCEEEeeccCCCcc-
Confidence 9887655 56777775 7999999999999999997777777779999999999955555 8999999999998765
Q ss_pred chHHHHHHHHHHHHHHHHHHHcCCCCC------CccccccCCCeEEEeecCCccee--------EecCcc-----ccCcc
Q 017664 283 KQGYLAQKHALVTAKNLKKLMMGRNKG------TMATYKPGYPIALVSLGRREGVA--------HFPFLT-----ISGRI 343 (368)
Q Consensus 283 ~~~~~a~~~g~~aa~~i~~~l~g~~~~------~~~~~~~~~~~~~~~~g~~~~~~--------~~~~~~-----~~~~~ 343 (368)
+++.|.+||++||+||+. +.... |...| ..|+++.||+++.++.. .+++.. ..+..
T Consensus 317 -Lah~A~~eg~iaa~~i~g---~~~~~~d~~~iP~~if-t~Peia~VGlte~ea~~~g~~~~~~~~~f~~~~ra~~~~~~ 391 (454)
T COG1249 317 -LAHVAMAEGRIAAENIAG---GKRTPIDYRLIPSVVF-TDPEIASVGLTEEEAKEAGIDYKVGKFPFAANGRAITMGET 391 (454)
T ss_pred -cHhHHHHHHHHHHHHHhC---CCCCcCcccCCCEEEE-CCCcceeeeCCHHHHHhcCCceEEEEeecccchhHHhccCC
Confidence 899999999999999984 11110 01122 36899999999888753 334322 35667
Q ss_pred ceeeeccccchhHHHHHcCCCC
Q 017664 344 PGWIKSRDLFVGKTRKQLGLKP 365 (368)
Q Consensus 344 ~~~~k~~~~~~~~~~~~lG~~~ 365 (368)
.|++|+ ++++++++|||+|+
T Consensus 392 ~G~~Kl--v~d~~t~~IlGahi 411 (454)
T COG1249 392 DGFVKL--VVDKETGRILGAHI 411 (454)
T ss_pred ceEEEE--EEECCCCeEEEEEE
Confidence 899999 99999999999986
No 3
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=100.00 E-value=4.7e-45 Score=344.16 Aligned_cols=329 Identities=21% Similarity=0.232 Sum_probs=250.8
Q ss_pred CCCCCcEEEECCChHHHHHHHHhhc-CCcEEEEcCCCceeeeccceeeeecccccccceeeccccc--CceeEEEeEEEE
Q 017664 13 LVEKKKVVVIGGGVGGSLLAYHIQS-FADVVLIDEKEYFEITWASLRAVVEPSFAVRSVINHGDYL--SNVKIVVSTAVS 89 (368)
Q Consensus 13 ~~~~~~vvIIGaG~aGl~aA~~L~~-g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 89 (368)
.+++++|||||||+||+.+|+.|.+ +++|+|||+++++.+.+.......+.........+....+ .+++++.+++..
T Consensus 7 ~~~~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~V~~ 86 (424)
T PTZ00318 7 RLKKPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNHMLFTPLLPQTTTGTLEFRSICEPVRPALAKLPNRYLRAVVYD 86 (424)
T ss_pred CCCCCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCCcchhhhHHHhcccCCChHHhHHHHHHHhccCCeEEEEEEEEE
Confidence 3456799999999999999999975 7899999999987665432211111111111111222222 257899999999
Q ss_pred eecc--EEEe----------cCCeEEEecEEEEecCCCCCCCCchH--------HHHHHHHHHHHH--------------
Q 017664 90 ITDT--EVVT----------AGGQTFVYDYVVVATGHVESVPKSRT--------ERLSQYEKDFEK-------------- 135 (368)
Q Consensus 90 ~~~~--~v~~----------~~g~~~~~d~lvlAtG~~~~~p~~~~--------~~~~~~~~~~~~-------------- 135 (368)
+|+. .+.+ .++..++||+||||||+.|..|++++ ..+.+.....+.
T Consensus 87 Id~~~~~v~~~~~~~~~~~~~~g~~i~yD~LViAtGs~~~~~~ipG~~e~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~ 166 (424)
T PTZ00318 87 VDFEEKRVKCGVVSKSNNANVNTFSVPYDKLVVAHGARPNTFNIPGVEERAFFLKEVNHARGIRKRIVQCIERASLPTTS 166 (424)
T ss_pred EEcCCCEEEEecccccccccCCceEecCCEEEECCCcccCCCCCCCHHHcCCCCCCHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 9854 5665 45678999999999999965444321 112222211111
Q ss_pred ---HhcCCeEEEEcCchhHHHHHHHHhhhC------------CCCeEEEEecCcccccccCchhHHHHHHHHHcCCcEEE
Q 017664 136 ---VKSANSVLIVGGGPTGVELAGEIAVDF------------PDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVI 200 (368)
Q Consensus 136 ---~~~~~~v~VvG~g~~~~e~a~~l~~~~------------~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~ 200 (368)
....++++|||+|++|+|+|.+|.+.. .+.+|+++++++++++.+++.+.+.+++.|+++||+++
T Consensus 167 ~~~~~~~~~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll~~~~~~~~~~~~~~L~~~gV~v~ 246 (424)
T PTZ00318 167 VEERKRLLHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVLGSFDQALRKYGQRRLRRLGVDIR 246 (424)
T ss_pred hHHHhccCEEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCcccccCCHHHHHHHHHHHHHCCCEEE
Confidence 112358999999999999999987531 36899999999999998999999999999999999999
Q ss_pred ecceeeecccCCCeEEcCCCcEEecCEEEEccCCCCCchhhhccccccccCCCCcEEeCCCeeecCCCCeEEecccCCC-
Q 017664 201 LNQSVTLNTISDGLIETSSGETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITDI- 279 (368)
Q Consensus 201 ~~~~v~~i~~~~~~v~~~~g~~i~~d~vi~a~G~~p~~~~~~~~~l~~~~~~~g~i~vd~~~~~~~~~~ifa~GD~~~~- 279 (368)
+++.|.++..+ .+.+++|+++++|.+||++|.+|+ +++...++ +++++|+|.||+++|++++|||||+|||+..
T Consensus 247 ~~~~v~~v~~~--~v~~~~g~~i~~d~vi~~~G~~~~-~~~~~~~l--~~~~~G~I~Vd~~l~~~~~~~IfAiGD~a~~~ 321 (424)
T PTZ00318 247 TKTAVKEVLDK--EVVLKDGEVIPTGLVVWSTGVGPG-PLTKQLKV--DKTSRGRISVDDHLRVKPIPNVFALGDCAANE 321 (424)
T ss_pred eCCeEEEEeCC--EEEECCCCEEEccEEEEccCCCCc-chhhhcCC--cccCCCcEEeCCCcccCCCCCEEEEeccccCC
Confidence 99999987643 688899999999999999999987 56666554 5678899999999998799999999999985
Q ss_pred --CccchHHHHHHHHHHHHHHHHHHHcCCCCCCccccccCCCeEEEeecCCcceeEecCccccCccceeee
Q 017664 280 --PEIKQGYLAQKHALVTAKNLKKLMMGRNKGTMATYKPGYPIALVSLGRREGVAHFPFLTISGRIPGWIK 348 (368)
Q Consensus 280 --~~~~~~~~a~~~g~~aa~~i~~~l~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~k 348 (368)
+.++++..|++||+.+|+||.+.+.|++ +..+|.+.....++++|..+++.+..+..+.|..++++|
T Consensus 322 ~~~~~~~~~~A~~qg~~~A~ni~~~l~g~~--~~~~~~~~~~g~~~~lG~~~av~~~~~~~~~g~~a~~~~ 390 (424)
T PTZ00318 322 ERPLPTLAQVASQQGVYLAKEFNNELKGKP--MSKPFVYRSLGSLAYLGNYSAIVQLGAFDLSGFKALLFW 390 (424)
T ss_pred CCCCCCchHHHHHHHHHHHHHHHHHhcCCC--CCCCCeecCCceEEEecCCceEEEcCCceEecHHHHHHH
Confidence 2356889999999999999999998875 235666666678899999999999877777777666554
No 4
>PRK06116 glutathione reductase; Validated
Probab=100.00 E-value=7.7e-46 Score=352.98 Aligned_cols=340 Identities=23% Similarity=0.285 Sum_probs=252.8
Q ss_pred CCCCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeeccc---ee---------------e-----eec---ccc
Q 017664 13 LVEKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITWAS---LR---------------A-----VVE---PSF 65 (368)
Q Consensus 13 ~~~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~~~---~~---------------~-----~~~---~~~ 65 (368)
|+.++|++||||||||++||.+|+ .|++|+|||++ .+|+.+.. +. . ... +.+
T Consensus 1 m~~~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~-~~GG~c~n~gciP~k~l~~~~~~~~~~~~~~~~~g~~~~~~~~ 79 (450)
T PRK06116 1 MTKDYDLIVIGGGSGGIASANRAAMYGAKVALIEAK-RLGGTCVNVGCVPKKLMWYGAQIAEAFHDYAPGYGFDVTENKF 79 (450)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCeEEEEecc-chhhhhhccCcchHHHHHHHHHHHHHHHhHHHhcCCCCCCCCc
Confidence 345799999999999999999998 59999999986 44432211 00 0 000 000
Q ss_pred cccceee------------cccc--cCceeEEEeEEEEeeccEEEecCCeEEEecEEEEecCCCCCCCCchHH-HHHHHH
Q 017664 66 AVRSVIN------------HGDY--LSNVKIVVSTAVSITDTEVVTAGGQTFVYDYVVVATGHVESVPKSRTE-RLSQYE 130 (368)
Q Consensus 66 ~~~~~~~------------~~~~--~~~~~~~~~~~~~~~~~~v~~~~g~~~~~d~lvlAtG~~~~~p~~~~~-~~~~~~ 130 (368)
....+.. ..+. ..+++++.+++..++++++.+ +++.++||+||||||+.|..|+++.. ...+..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~v~~~~v~~-~g~~~~~d~lViATGs~p~~p~i~g~~~~~~~~ 158 (450)
T PRK06116 80 DWAKLIANRDAYIDRLHGSYRNGLENNGVDLIEGFARFVDAHTVEV-NGERYTADHILIATGGRPSIPDIPGAEYGITSD 158 (450)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEE-CCEEEEeCEEEEecCCCCCCCCCCCcceeEchh
Confidence 0000000 0000 136889999999999888887 77889999999999999887765432 122222
Q ss_pred HHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHcCCcEEEecceeeeccc
Q 017664 131 KDFEKVKSANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVTLNTI 210 (368)
Q Consensus 131 ~~~~~~~~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~ 210 (368)
........+++++|||+|++|+|+|..+.+ .+.+|+++++++.+++.+++++...+.+.+++.||++++++.|.+++.
T Consensus 159 ~~~~~~~~~~~vvViGgG~~g~E~A~~l~~--~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~L~~~GV~i~~~~~V~~i~~ 236 (450)
T PRK06116 159 GFFALEELPKRVAVVGAGYIAVEFAGVLNG--LGSETHLFVRGDAPLRGFDPDIRETLVEEMEKKGIRLHTNAVPKAVEK 236 (450)
T ss_pred HhhCccccCCeEEEECCCHHHHHHHHHHHH--cCCeEEEEecCCCCccccCHHHHHHHHHHHHHCCcEEECCCEEEEEEE
Confidence 222222347899999999999999999884 588999999999888889999999999999999999999999999976
Q ss_pred CC-C--eEEcCCCcEEecCEEEEccCCCCCchhhhccccccccCCCCcEEeCCCeeecCCCCeEEecccCCCCccchHHH
Q 017664 211 SD-G--LIETSSGETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITDIPEIKQGYL 287 (368)
Q Consensus 211 ~~-~--~v~~~~g~~i~~d~vi~a~G~~p~~~~~~~~~l~~~~~~~g~i~vd~~~~~~~~~~ifa~GD~~~~~~~~~~~~ 287 (368)
++ + .+.+.+|+++++|.+|+++|++|+.+.+....+++.++++|++.||+++|| +.|||||+|||++.+. +++.
T Consensus 237 ~~~g~~~v~~~~g~~i~~D~Vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~T-s~~~IyA~GD~~~~~~--~~~~ 313 (450)
T PRK06116 237 NADGSLTLTLEDGETLTVDCLIWAIGREPNTDGLGLENAGVKLNEKGYIIVDEYQNT-NVPGIYAVGDVTGRVE--LTPV 313 (450)
T ss_pred cCCceEEEEEcCCcEEEeCEEEEeeCCCcCCCCCCchhcCceECCCCcEecCCCCCc-CCCCEEEEeecCCCcC--cHHH
Confidence 43 3 467778889999999999999999886543334447788899999999998 8999999999997543 7899
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCccc--ccc-----CCCeEEEeecCCcceeEe----------cCcc-----ccCccce
Q 017664 288 AQKHALVTAKNLKKLMMGRNKGTMAT--YKP-----GYPIALVSLGRREGVAHF----------PFLT-----ISGRIPG 345 (368)
Q Consensus 288 a~~~g~~aa~~i~~~l~g~~~~~~~~--~~~-----~~~~~~~~~g~~~~~~~~----------~~~~-----~~~~~~~ 345 (368)
|.+||+.||+||. |........ ..| .|+++.+|+++++|.... ++.. ..+...+
T Consensus 314 A~~~g~~aa~~i~----g~~~~~~~~~~~~p~~if~~p~~a~vGlte~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 389 (450)
T PRK06116 314 AIAAGRRLSERLF----NNKPDEKLDYSNIPTVVFSHPPIGTVGLTEEEAREQYGEDNVKVYRSSFTPMYTALTGHRQPC 389 (450)
T ss_pred HHHHHHHHHHHHh----CCCCCCcCCcCCCCeEEeCCCccEEeeCCHHHHHHhCCCCcEEEEEEecchhHHHHhcCCCce
Confidence 9999999999997 322100111 112 478999999887665431 1111 1345689
Q ss_pred eeeccccchhHHHHHcCCCC
Q 017664 346 WIKSRDLFVGKTRKQLGLKP 365 (368)
Q Consensus 346 ~~k~~~~~~~~~~~~lG~~~ 365 (368)
++|+ ++++++++|||+|+
T Consensus 390 ~~kl--v~~~~~~~ilG~~~ 407 (450)
T PRK06116 390 LMKL--VVVGKEEKVVGLHG 407 (450)
T ss_pred EEEE--EEECCCCEEEEEEE
Confidence 9999 99999999999986
No 5
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=100.00 E-value=1e-45 Score=350.64 Aligned_cols=338 Identities=22% Similarity=0.279 Sum_probs=250.1
Q ss_pred CCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeecc---ceeee-------------------ec----ccccc
Q 017664 15 EKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITWA---SLRAV-------------------VE----PSFAV 67 (368)
Q Consensus 15 ~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~~---~~~~~-------------------~~----~~~~~ 67 (368)
+++||+||||||||++||.+|+ .|.+|+|+|++. +|+.+. ..... .. ..+..
T Consensus 1 ~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~-~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~ 79 (450)
T TIGR01421 1 KHYDYLVIGGGSGGIASARRAAEHGAKALLVEAKK-LGGTCVNVGCVPKKVMWYASDLAERMHDAADYGFYQNLENTFNW 79 (450)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCcEEEecccc-cccceeccCcCccHHHHHHHHHHHHHhHHhhcCcccCCcCccCH
Confidence 4689999999999999999998 599999999964 444321 11000 00 00000
Q ss_pred cceee------------ccccc--CceeEEEeEEEEeeccEEEecCCeEEEecEEEEecCCCCCCC-CchHHHH-HHHHH
Q 017664 68 RSVIN------------HGDYL--SNVKIVVSTAVSITDTEVVTAGGQTFVYDYVVVATGHVESVP-KSRTERL-SQYEK 131 (368)
Q Consensus 68 ~~~~~------------~~~~~--~~~~~~~~~~~~~~~~~v~~~~g~~~~~d~lvlAtG~~~~~p-~~~~~~~-~~~~~ 131 (368)
..+.. ....+ .+++++.++....+++++.. ++..+.||+||||||+.|..| +++.... .+...
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~~~~~~v~v-~~~~~~~d~vIiAtGs~p~~p~~i~g~~~~~~~~~ 158 (450)
T TIGR01421 80 PELKEKRDAYVDRLNGIYQKNLEKNKVDVIFGHARFTKDGTVEV-NGRDYTAPHILIATGGKPSFPENIPGAELGTDSDG 158 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEE-CCEEEEeCEEEEecCCCCCCCCCCCCCceeEcHHH
Confidence 00000 00111 26788888887777777766 567899999999999998777 5443211 11222
Q ss_pred HHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHcCCcEEEecceeeecccC
Q 017664 132 DFEKVKSANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVTLNTIS 211 (368)
Q Consensus 132 ~~~~~~~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~ 211 (368)
.......+++++|||+|++|+|+|..+.+ .+.+|+++++.+++++.+++++...+.+.|+++||++++++.+.+++.+
T Consensus 159 ~~~~~~~~~~vvIIGgG~iG~E~A~~l~~--~g~~Vtli~~~~~il~~~d~~~~~~~~~~l~~~gI~i~~~~~v~~i~~~ 236 (450)
T TIGR01421 159 FFALEELPKRVVIVGAGYIAVELAGVLHG--LGSETHLVIRHERVLRSFDSMISETITEEYEKEGINVHKLSKPVKVEKT 236 (450)
T ss_pred hhCccccCCeEEEECCCHHHHHHHHHHHH--cCCcEEEEecCCCCCcccCHHHHHHHHHHHHHcCCEEEcCCEEEEEEEe
Confidence 22222347899999999999999999985 5899999999999999999999999999999999999999999998764
Q ss_pred C-C--eEEcCCC-cEEecCEEEEccCCCCCchhhhccccccccCCCCcEEeCCCeeecCCCCeEEecccCCCCccchHHH
Q 017664 212 D-G--LIETSSG-ETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITDIPEIKQGYL 287 (368)
Q Consensus 212 ~-~--~v~~~~g-~~i~~d~vi~a~G~~p~~~~~~~~~l~~~~~~~g~i~vd~~~~~~~~~~ifa~GD~~~~~~~~~~~~ 287 (368)
+ + .+.+.+| +++++|.+|+++|++|+.+++....+++.++++|++.||+++|| +.|||||+|||++.+. .++.
T Consensus 237 ~~~~~~v~~~~g~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~~~T-~~p~IyAiGD~~~~~~--~~~~ 313 (450)
T TIGR01421 237 VEGKLVIHFEDGKSIDDVDELIWAIGRKPNTKGLGLENVGIKLNEKGQIIVDEYQNT-NVPGIYALGDVVGKVE--LTPV 313 (450)
T ss_pred CCceEEEEECCCcEEEEcCEEEEeeCCCcCcccCCccccCcEECCCCcEEeCCCCcC-CCCCEEEEEecCCCcc--cHHH
Confidence 3 2 4666777 57999999999999999987654555557888999999999998 8999999999997654 7889
Q ss_pred HHHHHHHHHHHHHHHHcCCCC-------CCccccccCCCeEEEeecCCcceeEe----------cCcc-----ccCccce
Q 017664 288 AQKHALVTAKNLKKLMMGRNK-------GTMATYKPGYPIALVSLGRREGVAHF----------PFLT-----ISGRIPG 345 (368)
Q Consensus 288 a~~~g~~aa~~i~~~l~g~~~-------~~~~~~~~~~~~~~~~~g~~~~~~~~----------~~~~-----~~~~~~~ 345 (368)
|.+||+.+|+||.. +... .+...| ..|+++.+|+++++|.... ++.. ..+...+
T Consensus 314 A~~~g~~aa~~i~~---~~~~~~~~~~~~p~~~f-~~p~ia~vGlte~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g 389 (450)
T TIGR01421 314 AIAAGRKLSERLFN---GKTDDKLDYNNVPTVVF-SHPPIGTIGLTEKEAIEKYGKENIKVYNSSFTPMYYAMTSEKQKC 389 (450)
T ss_pred HHHHHHHHHHHHhc---CCCCCccCcccCCeEEe-CCCceEEEeCCHHHHHhhcCCCCEEEEEEEcChhHHHHhcCCCce
Confidence 99999999999972 1111 011122 2578999999988775331 1111 1356678
Q ss_pred eeeccccchhHHHHHcCCCC
Q 017664 346 WIKSRDLFVGKTRKQLGLKP 365 (368)
Q Consensus 346 ~~k~~~~~~~~~~~~lG~~~ 365 (368)
++|+ ++++++++|||+|+
T Consensus 390 ~~kl--v~~~~~~~ilG~~~ 407 (450)
T TIGR01421 390 RMKL--VCAGKEEKVVGLHG 407 (450)
T ss_pred EEEE--EEECCCCEEEEEEE
Confidence 9999 99999999999986
No 6
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=100.00 E-value=2.4e-45 Score=348.54 Aligned_cols=338 Identities=22% Similarity=0.228 Sum_probs=249.6
Q ss_pred CCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeeccc---eeee-------------------e--c-ccccc--
Q 017664 16 KKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITWAS---LRAV-------------------V--E-PSFAV-- 67 (368)
Q Consensus 16 ~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~~~---~~~~-------------------~--~-~~~~~-- 67 (368)
++|++||||||||++||.+++ +|++|+|+|++ .+|+.... .... . . ..+..
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~ 80 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEEP-RVGGTCVIRGCVPKKLMVYGSTFGGEFEDAAGYGWTVGKARFDWKK 80 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecC-ccCceeecCCcCchHHHHHHHHHHHHHhhhHhcCcCCCCCCcCHHH
Confidence 589999999999999999998 59999999985 45543210 0000 0 0 00000
Q ss_pred ------cceeec----ccc--cCceeEEEeEEEEeeccEEEe-cCCeEEEecEEEEecCCCCCCCCchHHH-HHHHHHHH
Q 017664 68 ------RSVINH----GDY--LSNVKIVVSTAVSITDTEVVT-AGGQTFVYDYVVVATGHVESVPKSRTER-LSQYEKDF 133 (368)
Q Consensus 68 ------~~~~~~----~~~--~~~~~~~~~~~~~~~~~~v~~-~~g~~~~~d~lvlAtG~~~~~p~~~~~~-~~~~~~~~ 133 (368)
+..... ... ..+++++.+++..++++++.. .++..++||+||||||+.|..|++++.. ..+.....
T Consensus 81 ~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g~~~~v~~~~v~v~~~g~~~~~d~lIiATGs~p~~p~i~G~~~~~~~~~~~ 160 (446)
T TIGR01424 81 LLQKKDDEIARLSGLYKRLLANAGVELLEGRARLVGPNTVEVLQDGTTYTAKKILIAVGGRPQKPNLPGHELGITSNEAF 160 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEEEecCCEEEEecCCeEEEcCEEEEecCCcCCCCCCCCccceechHHhh
Confidence 000000 011 126889999999998876543 4567899999999999998777654321 11222222
Q ss_pred HHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHcCCcEEEecceeeecccCCC
Q 017664 134 EKVKSANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVTLNTISDG 213 (368)
Q Consensus 134 ~~~~~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~ 213 (368)
.....+++++|||+|++|+|+|..+.+ .+.+|+++++++.+++.+++++...+.+.++++||++++++.+.+++.+++
T Consensus 161 ~l~~~~~~vvVIGgG~~g~E~A~~l~~--~G~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~ 238 (446)
T TIGR01424 161 HLPTLPKSILILGGGYIAVEFAGIWRG--LGVQVTLIYRGELILRGFDDDMRALLARNMEGRGIRIHPQTSLTSITKTDD 238 (446)
T ss_pred cccccCCeEEEECCcHHHHHHHHHHHH--cCCeEEEEEeCCCCCcccCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCC
Confidence 222347899999999999999999874 588999999999988888999999999999999999999999998875443
Q ss_pred --eEEcCCCcEEecCEEEEccCCCCCchhhhccccccccCCCCcEEeCCCeeecCCCCeEEecccCCCCccchHHHHHHH
Q 017664 214 --LIETSSGETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITDIPEIKQGYLAQKH 291 (368)
Q Consensus 214 --~v~~~~g~~i~~d~vi~a~G~~p~~~~~~~~~l~~~~~~~g~i~vd~~~~~~~~~~ifa~GD~~~~~~~~~~~~a~~~ 291 (368)
.+.+.+|+++++|.+|+|+|.+|+.+.+....++++++++|++.||+++|| +.|||||+|||++.+. +++.|.+|
T Consensus 239 ~~~v~~~~g~~i~~D~viva~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~~~T-s~~~IyA~GD~~~~~~--l~~~A~~~ 315 (446)
T TIGR01424 239 GLKVTLSHGEEIVADVVLFATGRSPNTKGLGLEAAGVELNDAGAIAVDEYSRT-SIPSIYAVGDVTDRIN--LTPVAIME 315 (446)
T ss_pred eEEEEEcCCcEeecCEEEEeeCCCcCCCcCCccccCeEECCCCcEEeCCCCcc-CCCCEEEeeccCCCcc--chhHHHHH
Confidence 566778889999999999999999876544444456788899999999999 8999999999997543 78999999
Q ss_pred HHHHHHHHHHHHcCCCCC----Cc--cccccCCCeEEEeecCCcceeE--e-------cCcc-----ccCccceeeeccc
Q 017664 292 ALVTAKNLKKLMMGRNKG----TM--ATYKPGYPIALVSLGRREGVAH--F-------PFLT-----ISGRIPGWIKSRD 351 (368)
Q Consensus 292 g~~aa~~i~~~l~g~~~~----~~--~~~~~~~~~~~~~~g~~~~~~~--~-------~~~~-----~~~~~~~~~k~~~ 351 (368)
|+.+|+||.. +.... .. ..| ..|+++.+|+++++|... + ++.. ..+...+++|+
T Consensus 316 g~~~a~~i~~---~~~~~~~~~~~p~~if-~~p~ia~vG~te~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~kl-- 389 (446)
T TIGR01424 316 ATCFANTEFG---NNPTKFDHDLIATAVF-SQPPLGTVGLTEEEAREKFTGDILVYRAGFRPMKNTFSGRQEKTLMKL-- 389 (446)
T ss_pred HHHHHHHHhc---CCCCccCcCCCCeEEe-CCchhEEEECCHHHHHhhcCCCEEEEEEecCchHhHhhcCCCceEEEE--
Confidence 9999999973 12110 00 112 246889999988766543 1 1111 24555789999
Q ss_pred cchhHHHHHcCCCC
Q 017664 352 LFVGKTRKQLGLKP 365 (368)
Q Consensus 352 ~~~~~~~~~lG~~~ 365 (368)
++++++++|||+|+
T Consensus 390 i~d~~~~~ilG~~~ 403 (446)
T TIGR01424 390 VVDEKDDKVLGAHM 403 (446)
T ss_pred EEeCCCCEEEEEEE
Confidence 99999999999986
No 7
>PLN02507 glutathione reductase
Probab=100.00 E-value=3.5e-45 Score=350.23 Aligned_cols=342 Identities=21% Similarity=0.225 Sum_probs=250.0
Q ss_pred CCCCcEEEECCChHHHHHHHHhh-cCCcEEEEcC---------CCceeeeccc---ee---------------e---e-e
Q 017664 14 VEKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDE---------KEYFEITWAS---LR---------------A---V-V 61 (368)
Q Consensus 14 ~~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~---------~~~~~~~~~~---~~---------------~---~-~ 61 (368)
..++|++||||||||++||.++. .|.+|+|||+ .+.+|+.+.. .. . . .
T Consensus 23 ~~~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~~~~~~~~~~~~~~GGtc~n~GciPsK~l~~~a~~~~~~~~~~~~G~ 102 (499)
T PLN02507 23 HYDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSESIGGVGGTCVIRGCVPKKILVYGATFGGEFEDAKNYGW 102 (499)
T ss_pred ccccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCcccccccCCCccceeeccCchhHHHHHHHHHHHHHHHHHHhcCc
Confidence 34689999999999999999998 5999999996 2345543211 00 0 0 0
Q ss_pred c----ccccccceeec--------c----cc--cCceeEEEeEEEEeeccEE--EecCCe--EEEecEEEEecCCCCCCC
Q 017664 62 E----PSFAVRSVINH--------G----DY--LSNVKIVVSTAVSITDTEV--VTAGGQ--TFVYDYVVVATGHVESVP 119 (368)
Q Consensus 62 ~----~~~~~~~~~~~--------~----~~--~~~~~~~~~~~~~~~~~~v--~~~~g~--~~~~d~lvlAtG~~~~~p 119 (368)
. ..+....+... . .. ..+++++++++..++++++ .+.+|+ .+.||+||||||+.|..|
T Consensus 103 ~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~i~g~a~~vd~~~v~V~~~~g~~~~~~~d~LIIATGs~p~~p 182 (499)
T PLN02507 103 EINEKVDFNWKKLLQKKTDEILRLNGIYKRLLANAGVKLYEGEGKIVGPNEVEVTQLDGTKLRYTAKHILIATGSRAQRP 182 (499)
T ss_pred ccCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEEEecCCEEEEEeCCCcEEEEEcCEEEEecCCCCCCC
Confidence 0 00111110100 0 01 1378999999999998744 445664 588999999999997766
Q ss_pred CchHHH-HHHHHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHcCCcE
Q 017664 120 KSRTER-LSQYEKDFEKVKSANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVE 198 (368)
Q Consensus 120 ~~~~~~-~~~~~~~~~~~~~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~ 198 (368)
+++... ..+..........+++++|||+|++|+|+|..+.+ .+.+|+++++.+++++.+++++...+.+.|++.||+
T Consensus 183 ~ipG~~~~~~~~~~~~l~~~~k~vvVIGgG~ig~E~A~~l~~--~G~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~GI~ 260 (499)
T PLN02507 183 NIPGKELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRG--MGATVDLFFRKELPLRGFDDEMRAVVARNLEGRGIN 260 (499)
T ss_pred CCCCccceechHHhhhhhhcCCeEEEECCcHHHHHHHHHHHH--cCCeEEEEEecCCcCcccCHHHHHHHHHHHHhCCCE
Confidence 554321 12223322222347899999999999999999874 589999999999888889999999999999999999
Q ss_pred EEecceeeecccCCC--eEEcCCCcEEecCEEEEccCCCCCchhhhccccccccCCCCcEEeCCCeeecCCCCeEEeccc
Q 017664 199 VILNQSVTLNTISDG--LIETSSGETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDI 276 (368)
Q Consensus 199 i~~~~~v~~i~~~~~--~v~~~~g~~i~~d~vi~a~G~~p~~~~~~~~~l~~~~~~~g~i~vd~~~~~~~~~~ifa~GD~ 276 (368)
+++++.|.+++.+++ .+.+.+|+++++|.+++++|++|+.+++....+++.++++|+|.||+++|| +.|||||+|||
T Consensus 261 i~~~~~V~~i~~~~~~~~v~~~~g~~i~~D~vl~a~G~~pn~~~l~l~~~gl~~~~~G~I~Vd~~~~T-s~p~IyAiGDv 339 (499)
T PLN02507 261 LHPRTNLTQLTKTEGGIKVITDHGEEFVADVVLFATGRAPNTKRLNLEAVGVELDKAGAVKVDEYSRT-NIPSIWAIGDV 339 (499)
T ss_pred EEeCCEEEEEEEeCCeEEEEECCCcEEEcCEEEEeecCCCCCCCCCchhhCcEECCCCcEecCCCCcC-CCCCEEEeeEc
Confidence 999999999876544 567778889999999999999999987543444446788899999999998 89999999999
Q ss_pred CCCCccchHHHHHHHHHHHHHHHHHHHcCCCCC------CccccccCCCeEEEeecCCcceeEe---------cCcc---
Q 017664 277 TDIPEIKQGYLAQKHALVTAKNLKKLMMGRNKG------TMATYKPGYPIALVSLGRREGVAHF---------PFLT--- 338 (368)
Q Consensus 277 ~~~~~~~~~~~a~~~g~~aa~~i~~~l~g~~~~------~~~~~~~~~~~~~~~~g~~~~~~~~---------~~~~--- 338 (368)
++.+. +++.|.+||+.+|+||.. +.... +...|+ .|+++.+|+++++|.... ++..
T Consensus 340 ~~~~~--l~~~A~~qg~~aa~ni~g---~~~~~~~~~~~p~~if~-~p~ia~vGlte~ea~~~~~~~~~~~~~~~~~~~~ 413 (499)
T PLN02507 340 TNRIN--LTPVALMEGTCFAKTVFG---GQPTKPDYENVACAVFC-IPPLSVVGLSEEEAVEQAKGDILVFTSSFNPMKN 413 (499)
T ss_pred CCCCc--cHHHHHHHHHHHHHHHcC---CCCCcCCCCCCCeEEEC-CCccEEEeCCHHHHHhccCCCEEEEEeecCcccc
Confidence 97644 789999999999999972 22111 011111 368999999887665431 2211
Q ss_pred -cc-CccceeeeccccchhHHHHHcCCCCC
Q 017664 339 -IS-GRIPGWIKSRDLFVGKTRKQLGLKPT 366 (368)
Q Consensus 339 -~~-~~~~~~~k~~~~~~~~~~~~lG~~~~ 366 (368)
+. +...+++|+ ++++++++|||+|+.
T Consensus 414 ~~~~~~~~g~~Kl--i~d~~t~~ilG~~~v 441 (499)
T PLN02507 414 TISGRQEKTVMKL--IVDAETDKVLGASMC 441 (499)
T ss_pred ccccCCCCEEEEE--EEECCCCEEEEEEEE
Confidence 11 234689998 999999999999863
No 8
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=2.6e-45 Score=349.88 Aligned_cols=340 Identities=19% Similarity=0.277 Sum_probs=251.7
Q ss_pred CCCCCcEEEECCChHHHHHHHHhhc-CCcEEEEcCCCceeeeccc---eee---------------e----e---ccccc
Q 017664 13 LVEKKKVVVIGGGVGGSLLAYHIQS-FADVVLIDEKEYFEITWAS---LRA---------------V----V---EPSFA 66 (368)
Q Consensus 13 ~~~~~~vvIIGaG~aGl~aA~~L~~-g~~v~lie~~~~~~~~~~~---~~~---------------~----~---~~~~~ 66 (368)
|+.++|++||||||||++||.+|++ |++|+|||+++.+|+.+.. +.. . + ...+.
T Consensus 1 ~~~~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~GG~c~n~gciP~K~l~~~a~~~~~~~~~~~~g~~~~~~~~~ 80 (471)
T PRK06467 1 MEIKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGGVCLNVGCIPSKALLHVAKVIEEAKALAEHGIVFGEPKID 80 (471)
T ss_pred CCccceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCcccccccCCCcccHHHHHHHHHHHHHHhhhhhcCcccCCCCcC
Confidence 4567999999999999999999985 9999999998766643211 000 0 0 00000
Q ss_pred ccceeecc------------cc--cCceeEEEeEEEEeeccEEEe--cCC--eEEEecEEEEecCCCCC-CCCchH--HH
Q 017664 67 VRSVINHG------------DY--LSNVKIVVSTAVSITDTEVVT--AGG--QTFVYDYVVVATGHVES-VPKSRT--ER 125 (368)
Q Consensus 67 ~~~~~~~~------------~~--~~~~~~~~~~~~~~~~~~v~~--~~g--~~~~~d~lvlAtG~~~~-~p~~~~--~~ 125 (368)
...+..+. .. ..+++++.+.+..++++++.. .+| ..++||+||||||++|. .|.++. ..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~a~~~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~~p~~~~~~~~ 160 (471)
T PRK06467 81 IDKMRARKEKVVKQLTGGLAGMAKGRKVTVVNGLGKFTGGNTLEVTGEDGKTTVIEFDNAIIAAGSRPIQLPFIPHDDPR 160 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEecCCCceEEEEcCEEEEeCCCCCCCCCCCCCCCCc
Confidence 01111000 00 127889999999999886544 345 47999999999999986 444322 22
Q ss_pred HHHHHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHcCCcEEEeccee
Q 017664 126 LSQYEKDFEKVKSANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSV 205 (368)
Q Consensus 126 ~~~~~~~~~~~~~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v 205 (368)
+.+.....+....+++++|||+|++|+|+|..+.+ .+.+|+++++.+++++.+++++...+.+.++++ +++++++.+
T Consensus 161 v~~~~~~~~~~~~~~~vvIiGgG~iG~E~A~~l~~--~G~~Vtlv~~~~~il~~~d~~~~~~~~~~l~~~-v~i~~~~~v 237 (471)
T PRK06467 161 IWDSTDALELKEVPKRLLVMGGGIIGLEMGTVYHR--LGSEVDVVEMFDQVIPAADKDIVKVFTKRIKKQ-FNIMLETKV 237 (471)
T ss_pred EEChHHhhccccCCCeEEEECCCHHHHHHHHHHHH--cCCCEEEEecCCCCCCcCCHHHHHHHHHHHhhc-eEEEcCCEE
Confidence 33333333323347899999999999999999984 589999999999999999999999999999988 999999999
Q ss_pred eecccCCC--eEEcCC--C--cEEecCEEEEccCCCCCchhhhccccccccCCCCcEEeCCCeeecCCCCeEEecccCCC
Q 017664 206 TLNTISDG--LIETSS--G--ETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITDI 279 (368)
Q Consensus 206 ~~i~~~~~--~v~~~~--g--~~i~~d~vi~a~G~~p~~~~~~~~~l~~~~~~~g~i~vd~~~~~~~~~~ifa~GD~~~~ 279 (368)
..++.+++ .+.+.+ + +++++|.+|+++|++|+.+++.....++.++++|+|.||+++|| +.|||||+|||++.
T Consensus 238 ~~i~~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~pn~~~l~~~~~gl~~~~~G~I~Vd~~~~t-~~p~VyAiGDv~~~ 316 (471)
T PRK06467 238 TAVEAKEDGIYVTMEGKKAPAEPQRYDAVLVAVGRVPNGKLLDAEKAGVEVDERGFIRVDKQCRT-NVPHIFAIGDIVGQ 316 (471)
T ss_pred EEEEEcCCEEEEEEEeCCCcceEEEeCEEEEeecccccCCccChhhcCceECCCCcEeeCCCccc-CCCCEEEehhhcCC
Confidence 98876544 344333 2 46999999999999999987655555567888999999999999 89999999999975
Q ss_pred CccchHHHHHHHHHHHHHHHHHHHcCCCCC------CccccccCCCeEEEeecCCccee--------EecCc-----ccc
Q 017664 280 PEIKQGYLAQKHALVTAKNLKKLMMGRNKG------TMATYKPGYPIALVSLGRREGVA--------HFPFL-----TIS 340 (368)
Q Consensus 280 ~~~~~~~~a~~~g~~aa~~i~~~l~g~~~~------~~~~~~~~~~~~~~~~g~~~~~~--------~~~~~-----~~~ 340 (368)
+. +++.|.+||+.||+||. |.... +...| ..|+++.+|+++++|.. .+++. ...
T Consensus 317 ~~--la~~A~~eG~~aa~~i~----g~~~~~~~~~~p~~~~-~~p~ia~vGlte~ea~~~g~~~~~~~~~~~~~~~~~~~ 389 (471)
T PRK06467 317 PM--LAHKGVHEGHVAAEVIA----GKKHYFDPKVIPSIAY-TEPEVAWVGLTEKEAKEEGIEYETATFPWAASGRAIAS 389 (471)
T ss_pred cc--cHHHHHHHHHHHHHHHc----CCCCCCCCCCCCeEEE-CCCceeEEECCHHHHHhcCCCeEEEEEecCcchhhhhC
Confidence 44 78999999999999997 32211 00112 25789999998877653 22322 134
Q ss_pred CccceeeeccccchhHHHHHcCCCC
Q 017664 341 GRIPGWIKSRDLFVGKTRKQLGLKP 365 (368)
Q Consensus 341 ~~~~~~~k~~~~~~~~~~~~lG~~~ 365 (368)
+...+++|+ ++++++++|||+|+
T Consensus 390 ~~~~g~~kl--i~d~~t~~ilG~~~ 412 (471)
T PRK06467 390 DCADGMTKL--IFDKETHRVLGGAI 412 (471)
T ss_pred CCCceEEEE--EEECCCCeEEEEEE
Confidence 566899999 99999999999986
No 9
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=100.00 E-value=4.3e-45 Score=349.24 Aligned_cols=342 Identities=22% Similarity=0.282 Sum_probs=255.3
Q ss_pred CCCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeeccceeeee-------------------------cccccc
Q 017664 14 VEKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITWASLRAVV-------------------------EPSFAV 67 (368)
Q Consensus 14 ~~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~~~~~~~~-------------------------~~~~~~ 67 (368)
+.++||+||||||||++||.+|+ .|.+|+|||+++.+|+.+....... ......
T Consensus 3 ~~~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~~GG~~~~~gcipsk~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (461)
T PRK05249 3 MYDYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNVGGGCTHTGTIPSKALREAVLRLIGFNQNPLYSSYRVKLRITF 82 (461)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCCEEEEEeccccccccccccCCCCHHHHHHHHHHHHHHhhhhhhcccCCcCccCH
Confidence 45699999999999999999997 5999999999877765432110000 000000
Q ss_pred cceee------------cccc--cCceeEEEeEEEEeeccEE--EecCCe--EEEecEEEEecCCCCCCCCc---hHHHH
Q 017664 68 RSVIN------------HGDY--LSNVKIVVSTAVSITDTEV--VTAGGQ--TFVYDYVVVATGHVESVPKS---RTERL 126 (368)
Q Consensus 68 ~~~~~------------~~~~--~~~~~~~~~~~~~~~~~~v--~~~~g~--~~~~d~lvlAtG~~~~~p~~---~~~~~ 126 (368)
..+.. ..++ ..+++++.+.+..++.+++ ...++. .+.||+||||||+.|..|+. ....+
T Consensus 83 ~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~~d~lviATGs~p~~p~~~~~~~~~v 162 (461)
T PRK05249 83 ADLLARADHVINKQVEVRRGQYERNRVDLIQGRARFVDPHTVEVECPDGEVETLTADKIVIATGSRPYRPPDVDFDHPRI 162 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEecCCEEEEEeCCCceEEEEcCEEEEcCCCCCCCCCCCCCCCCeE
Confidence 00000 0001 1267888888888887754 344553 78999999999999877653 22333
Q ss_pred HHHHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHcCCcEEEecceee
Q 017664 127 SQYEKDFEKVKSANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVT 206 (368)
Q Consensus 127 ~~~~~~~~~~~~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~ 206 (368)
.+..........+++++|||+|++|+|+|..+.+ .+.+|+++++.+++++.+++++...+.+.+++.||++++++.++
T Consensus 163 ~~~~~~~~~~~~~~~v~IiGgG~~g~E~A~~l~~--~g~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~gI~v~~~~~v~ 240 (461)
T PRK05249 163 YDSDSILSLDHLPRSLIIYGAGVIGCEYASIFAA--LGVKVTLINTRDRLLSFLDDEISDALSYHLRDSGVTIRHNEEVE 240 (461)
T ss_pred EcHHHhhchhhcCCeEEEECCCHHHHHHHHHHHH--cCCeEEEEecCCCcCCcCCHHHHHHHHHHHHHcCCEEEECCEEE
Confidence 3334433334458999999999999999999985 58999999999999999999999999999999999999999999
Q ss_pred ecccCCC--eEEcCCCcEEecCEEEEccCCCCCchhhhccccccccCCCCcEEeCCCeeecCCCCeEEecccCCCCccch
Q 017664 207 LNTISDG--LIETSSGETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITDIPEIKQ 284 (368)
Q Consensus 207 ~i~~~~~--~v~~~~g~~i~~d~vi~a~G~~p~~~~~~~~~l~~~~~~~g~i~vd~~~~~~~~~~ifa~GD~~~~~~~~~ 284 (368)
+++.+++ .+.+.+|+++++|.+++|+|++|+.+++....+++.++++|++.||+++|| +.|||||+|||++.+. +
T Consensus 241 ~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t-~~~~IyAiGD~~~~~~--~ 317 (461)
T PRK05249 241 KVEGGDDGVIVHLKSGKKIKADCLLYANGRTGNTDGLNLENAGLEADSRGQLKVNENYQT-AVPHIYAVGDVIGFPS--L 317 (461)
T ss_pred EEEEeCCeEEEEECCCCEEEeCEEEEeecCCccccCCCchhhCcEecCCCcEeeCCCccc-CCCCEEEeeecCCCcc--c
Confidence 8876544 556677889999999999999999886544444557788899999999998 8999999999997544 7
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCcccccc-----CCCeEEEeecCCccee--------EecCc-----cccCcccee
Q 017664 285 GYLAQKHALVTAKNLKKLMMGRNKGTMATYKP-----GYPIALVSLGRREGVA--------HFPFL-----TISGRIPGW 346 (368)
Q Consensus 285 ~~~a~~~g~~aa~~i~~~l~g~~~~~~~~~~~-----~~~~~~~~~g~~~~~~--------~~~~~-----~~~~~~~~~ 346 (368)
++.|.+||+.||.||. |.+....+...| .|+++.+|+++++|.. .+++. .+.+...++
T Consensus 318 ~~~A~~~g~~aa~~i~----g~~~~~~~~~~p~~i~~~p~ia~vG~te~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~ 393 (461)
T PRK05249 318 ASASMDQGRIAAQHAV----GEATAHLIEDIPTGIYTIPEISSVGKTEQELTAAKVPYEVGRARFKELARAQIAGDNVGM 393 (461)
T ss_pred HhHHHHHHHHHHHHHc----CCCcccccCCCCeEEECCCcceEecCCHHHHHHcCCCeEEEEEccccccceeecCCCCcE
Confidence 8999999999999997 332111111112 3688999998876642 22221 134566789
Q ss_pred eeccccchhHHHHHcCCCCC
Q 017664 347 IKSRDLFVGKTRKQLGLKPT 366 (368)
Q Consensus 347 ~k~~~~~~~~~~~~lG~~~~ 366 (368)
+|+ ++++++++|||+|+.
T Consensus 394 ~kl--v~~~~~~~ilG~~~~ 411 (461)
T PRK05249 394 LKI--LFHRETLEILGVHCF 411 (461)
T ss_pred EEE--EEECCCCEEEEEEEE
Confidence 999 999999999999863
No 10
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=100.00 E-value=1.6e-44 Score=342.00 Aligned_cols=337 Identities=18% Similarity=0.275 Sum_probs=251.4
Q ss_pred CcEEEECCChHHHHHHHHhhc---CCcEEEEcCCCceeeeccceeeeeccccc-ccceeec--cccc--CceeEE-EeEE
Q 017664 17 KKVVVIGGGVGGSLLAYHIQS---FADVVLIDEKEYFEITWASLRAVVEPSFA-VRSVINH--GDYL--SNVKIV-VSTA 87 (368)
Q Consensus 17 ~~vvIIGaG~aGl~aA~~L~~---g~~v~lie~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~--~~~~~~-~~~~ 87 (368)
++|||||||+||++||..|++ +++|+|||+++.+.+....+......... .....+. ..+. .++++. ..++
T Consensus 2 ~~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~V 81 (438)
T PRK13512 2 PKIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSFANCALPYYIGEVVEDRKYALAYTPEKFYDRKQITVKTYHEV 81 (438)
T ss_pred CeEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCcccccCCcchhhcCccCCHHHcccCCHHHHHHhCCCEEEeCCEE
Confidence 489999999999999999973 78999999999887665444333222111 1111111 1221 267764 4678
Q ss_pred EEeecc--EEEecCC---e--EEEecEEEEecCCCCCCCCchHH------HHHHHHHHHHHH--hcCCeEEEEcCchhHH
Q 017664 88 VSITDT--EVVTAGG---Q--TFVYDYVVVATGHVESVPKSRTE------RLSQYEKDFEKV--KSANSVLIVGGGPTGV 152 (368)
Q Consensus 88 ~~~~~~--~v~~~~g---~--~~~~d~lvlAtG~~~~~p~~~~~------~~~~~~~~~~~~--~~~~~v~VvG~g~~~~ 152 (368)
..+|+. .+.+.++ . .++||+||||||+.|..|+++.. .+.+.....+.+ ..+++++|||+|++|+
T Consensus 82 ~~Id~~~~~v~~~~~~~~~~~~~~yd~lviAtGs~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vvViGgG~ig~ 161 (438)
T PRK13512 82 IAINDERQTVTVLNRKTNEQFEESYDKLILSPGASANSLGFESDITFTLRNLEDTDAIDQFIKANQVDKALVVGAGYISL 161 (438)
T ss_pred EEEECCCCEEEEEECCCCcEEeeecCEEEECCCCCCCCCCCCCCCeEEecCHHHHHHHHHHHhhcCCCEEEEECCCHHHH
Confidence 888854 5655432 2 47899999999999988875422 233333333222 2368999999999999
Q ss_pred HHHHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHcCCcEEEecceeeecccCCCeEEcCCCcEEecCEEEEcc
Q 017664 153 ELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVTLNTISDGLIETSSGETIDTDCHFMCT 232 (368)
Q Consensus 153 e~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~v~~~~g~~i~~d~vi~a~ 232 (368)
|+|..|.+ .+.+|+++++.+++++.+++++...+.+.+++.||++++++.+++++. ..+.+.+|+++++|.+++++
T Consensus 162 E~A~~l~~--~g~~Vtli~~~~~l~~~~d~~~~~~l~~~l~~~gI~i~~~~~v~~i~~--~~v~~~~g~~~~~D~vl~a~ 237 (438)
T PRK13512 162 EVLENLYE--RGLHPTLIHRSDKINKLMDADMNQPILDELDKREIPYRLNEEIDAING--NEVTFKSGKVEHYDMIIEGV 237 (438)
T ss_pred HHHHHHHh--CCCcEEEEecccccchhcCHHHHHHHHHHHHhcCCEEEECCeEEEEeC--CEEEECCCCEEEeCEEEECc
Confidence 99999984 588999999999988889999999999999999999999999998863 36777888899999999999
Q ss_pred CCCCCchhhhccccccccCCCCcEEeCCCeeecCCCCeEEecccCCCC--------ccchHHHHHHHHHHHHHHHHHHHc
Q 017664 233 GKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITDIP--------EIKQGYLAQKHALVTAKNLKKLMM 304 (368)
Q Consensus 233 G~~p~~~~~~~~~l~~~~~~~g~i~vd~~~~~~~~~~ifa~GD~~~~~--------~~~~~~~a~~~g~~aa~~i~~~l~ 304 (368)
|++|+.+++...++ .++++|++.||+++|| +.|||||+|||++.+ .+++++.|.+||+.+|+||.
T Consensus 238 G~~pn~~~l~~~gl--~~~~~G~i~Vd~~~~t-~~~~IyA~GD~~~~~~~~~~~~~~~~la~~A~~~a~~~a~ni~---- 310 (438)
T PRK13512 238 GTHPNSKFIESSNI--KLDDKGFIPVNDKFET-NVPNIYAIGDIITSHYRHVDLPASVPLAWGAHRAASIVAEQIA---- 310 (438)
T ss_pred CCCcChHHHHhcCc--ccCCCCcEEECCCccc-CCCCEEEeeeeEEeeeccCCCceecccchHHHHHHHHHHHHhc----
Confidence 99999998877665 5677899999999998 899999999998632 23467889999999999997
Q ss_pred CCCCCCcccc-------ccCCCeEEEeecCCcceeE------ecCc----cccCccceeeeccccchhHHHHHcCCCCC
Q 017664 305 GRNKGTMATY-------KPGYPIALVSLGRREGVAH------FPFL----TISGRIPGWIKSRDLFVGKTRKQLGLKPT 366 (368)
Q Consensus 305 g~~~~~~~~~-------~~~~~~~~~~~g~~~~~~~------~~~~----~~~~~~~~~~k~~~~~~~~~~~~lG~~~~ 366 (368)
|.+..+...+ ...|+++.+|+++.++... +.+. ...+...+++|+ ++++++++|||+|+.
T Consensus 311 g~~~~~~~~~~~~~~~~~~~~~ia~vGlte~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~kl--v~d~~~~~ilGa~~~ 387 (438)
T PRK13512 311 GNDTIEFKGFLGNNIVKFFDYTFASVGVKPNELKQFDYKMVEVTQGAHANYYPGNSPLHLRV--YYDTSNRKILRAAAV 387 (438)
T ss_pred CCCccccCCcccceEEEEcCceEEeecCCHHHHccCCcEEEEEecCCcCCCcCCCceEEEEE--EEECCCCeEEEEEEE
Confidence 4321111011 1257888899988776532 1111 124566889999 999999999999873
No 11
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=100.00 E-value=1.4e-44 Score=343.56 Aligned_cols=341 Identities=19% Similarity=0.278 Sum_probs=250.4
Q ss_pred CCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCc-eeeeccceeeee----------cccccc---------ccee--
Q 017664 15 EKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEY-FEITWASLRAVV----------EPSFAV---------RSVI-- 71 (368)
Q Consensus 15 ~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~-~~~~~~~~~~~~----------~~~~~~---------~~~~-- 71 (368)
+++||+||||||||++||.+|+ +|.+|+|||+++. +|+.+....... ...+.. ..+.
T Consensus 2 ~~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~~~~GG~~~~~gcip~k~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (441)
T PRK08010 2 NKYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNAMYGGTCINIGCIPTKTLVHDAQQHTDFVRAIQRKNEVVNFLRNK 81 (441)
T ss_pred CcCCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCCCccceeEeeccccchHHHHHHhccCCCHHHHHHHHHHHHHHHHHh
Confidence 4699999999999999999997 5999999999863 554432111000 001100 0000
Q ss_pred ecccc--cCceeEEEeEEEEeeccEE--EecCCe-EEEecEEEEecCCCCCCCCchH----HHHHHHHHHHHHHhcCCeE
Q 017664 72 NHGDY--LSNVKIVVSTAVSITDTEV--VTAGGQ-TFVYDYVVVATGHVESVPKSRT----ERLSQYEKDFEKVKSANSV 142 (368)
Q Consensus 72 ~~~~~--~~~~~~~~~~~~~~~~~~v--~~~~g~-~~~~d~lvlAtG~~~~~p~~~~----~~~~~~~~~~~~~~~~~~v 142 (368)
...+. ..+++++.+++..++++.+ .+.++. .+.||+||+|||++|..|++++ ..+.+..........++++
T Consensus 82 ~~~~~~~~~gv~~~~g~~~~i~~~~~~v~~~~g~~~~~~d~lviATGs~p~~p~i~G~~~~~~v~~~~~~~~~~~~~~~v 161 (441)
T PRK08010 82 NFHNLADMPNIDVIDGQAEFINNHSLRVHRPEGNLEIHGEKIFINTGAQTVVPPIPGITTTPGVYDSTGLLNLKELPGHL 161 (441)
T ss_pred HHHHHhhcCCcEEEEEEEEEecCCEEEEEeCCCeEEEEeCEEEEcCCCcCCCCCCCCccCCCCEEChhHhhcccccCCeE
Confidence 00011 2378899999988987744 445664 6999999999999976665432 1222333333333457899
Q ss_pred EEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHcCCcEEEecceeeecccCCC--eEEcCCC
Q 017664 143 LIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVTLNTISDG--LIETSSG 220 (368)
Q Consensus 143 ~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~--~v~~~~g 220 (368)
+|+|+|++|+|+|..+.+ .+.+|+++++++++++..++++...+.+.+++.||++++++.+.+++.+++ .+.++++
T Consensus 162 ~ViGgG~~g~E~A~~l~~--~g~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~gV~v~~~~~v~~i~~~~~~v~v~~~~g 239 (441)
T PRK08010 162 GILGGGYIGVEFASMFAN--FGSKVTILEAASLFLPREDRDIADNIATILRDQGVDIILNAHVERISHHENQVQVHSEHA 239 (441)
T ss_pred EEECCCHHHHHHHHHHHH--CCCeEEEEecCCCCCCCcCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEEcCC
Confidence 999999999999999985 589999999999999988989999999999999999999999999876655 4445555
Q ss_pred cEEecCEEEEccCCCCCchhhhccccccccCCCCcEEeCCCeeecCCCCeEEecccCCCCccchHHHHHHHHHHHHHHHH
Q 017664 221 ETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITDIPEIKQGYLAQKHALVTAKNLK 300 (368)
Q Consensus 221 ~~i~~d~vi~a~G~~p~~~~~~~~~l~~~~~~~g~i~vd~~~~~~~~~~ifa~GD~~~~~~~~~~~~a~~~g~~aa~~i~ 300 (368)
++++|.+++++|.+|+.+++....+++.++++|+|.||+++|| +.|||||+|||++.+ ++.+.|..||+.+++||+
T Consensus 240 -~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~vd~~~~T-s~~~IyA~GD~~~~~--~~~~~a~~~~~~~~~~~~ 315 (441)
T PRK08010 240 -QLAVDALLIASGRQPATASLHPENAGIAVNERGAIVVDKYLHT-TADNIWAMGDVTGGL--QFTYISLDDYRIVRDELL 315 (441)
T ss_pred -eEEeCEEEEeecCCcCCCCcCchhcCcEECCCCcEEECCCccc-CCCCEEEeeecCCCc--cchhHHHHHHHHHHHHHc
Confidence 5999999999999999887654444556788899999999999 899999999999865 478999999999999997
Q ss_pred HHHcCCCC------CCccccccCCCeEEEeecCCcceeE--------ecCcc-----ccCccceeeeccccchhHHHHHc
Q 017664 301 KLMMGRNK------GTMATYKPGYPIALVSLGRREGVAH--------FPFLT-----ISGRIPGWIKSRDLFVGKTRKQL 361 (368)
Q Consensus 301 ~~l~g~~~------~~~~~~~~~~~~~~~~~g~~~~~~~--------~~~~~-----~~~~~~~~~k~~~~~~~~~~~~l 361 (368)
.. .... .+...| ..|+++.+|+++++|... +++.. ..+...+++|+ ++++++++||
T Consensus 316 g~--~~~~~~~~~~~p~~~~-~~p~ia~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~kl--i~d~~~~~il 390 (441)
T PRK08010 316 GE--GKRSTDDRKNVPYSVF-MTPPLSRVGMTEEQARESGADIQVVTLPVAAIPRARVMNDTRGVLKA--IVDNKTQRIL 390 (441)
T ss_pred CC--CCcccCccCCCCEEEE-CCCCceeeeCCHHHHHHcCCCeEEEEEecCcChhhhhcCCCceEEEE--EEECCCCEEE
Confidence 21 0110 001112 257899999998776532 22211 23445779998 9999999999
Q ss_pred CCCCC
Q 017664 362 GLKPT 366 (368)
Q Consensus 362 G~~~~ 366 (368)
|+|+.
T Consensus 391 G~~~~ 395 (441)
T PRK08010 391 GASLL 395 (441)
T ss_pred EEEEE
Confidence 99863
No 12
>PRK06370 mercuric reductase; Validated
Probab=100.00 E-value=1.1e-44 Score=346.15 Aligned_cols=343 Identities=22% Similarity=0.256 Sum_probs=249.4
Q ss_pred CCCCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeec---cceee-----------------eec------ccc
Q 017664 13 LVEKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITW---ASLRA-----------------VVE------PSF 65 (368)
Q Consensus 13 ~~~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~---~~~~~-----------------~~~------~~~ 65 (368)
|+.++||+||||||||++||.+|+ .|++|+|||+.. +|+.+ ..... ..+ ..+
T Consensus 2 ~~~~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~~-~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~ 80 (463)
T PRK06370 2 PAQRYDAIVIGAGQAGPPLAARAAGLGMKVALIERGL-LGGTCVNTGCVPTKTLIASARAAHLARRAAEYGVSVGGPVSV 80 (463)
T ss_pred CCccccEEEECCCHHHHHHHHHHHhCCCeEEEEecCc-cCCceeccccCcHHHHHHHHHHHHHHHHHHhcCcccCccCcc
Confidence 567899999999999999999998 499999999874 33221 11000 000 011
Q ss_pred ccccee------------eccccc---CceeEEEeEEEEeeccEEEecCCeEEEecEEEEecCCCCCCCCchH---HHHH
Q 017664 66 AVRSVI------------NHGDYL---SNVKIVVSTAVSITDTEVVTAGGQTFVYDYVVVATGHVESVPKSRT---ERLS 127 (368)
Q Consensus 66 ~~~~~~------------~~~~~~---~~~~~~~~~~~~~~~~~v~~~~g~~~~~d~lvlAtG~~~~~p~~~~---~~~~ 127 (368)
....+. ....++ .+++++.+....++.+++.. ++..++||+||||||+.|..|++++ ..+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~g~~~~~~~~~v~v-~~~~~~~d~lViATGs~p~~p~i~G~~~~~~~ 159 (463)
T PRK06370 81 DFKAVMARKRRIRARSRHGSEQWLRGLEGVDVFRGHARFESPNTVRV-GGETLRAKRIFINTGARAAIPPIPGLDEVGYL 159 (463)
T ss_pred CHHHHHHHHHHHHHHHHHhHHHHHhcCCCcEEEEEEEEEccCCEEEE-CcEEEEeCEEEEcCCCCCCCCCCCCCCcCceE
Confidence 100000 011111 26888888888888888776 4678999999999999987766542 2222
Q ss_pred HHHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHcCCcEEEecceeee
Q 017664 128 QYEKDFEKVKSANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVTL 207 (368)
Q Consensus 128 ~~~~~~~~~~~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~ 207 (368)
+..........+++++|||+|++|+|+|..+.+ .+.+|+++++.+++++..++++...+.+.+++.||++++++.+.+
T Consensus 160 ~~~~~~~~~~~~~~vvVIGgG~~g~E~A~~l~~--~G~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~GV~i~~~~~V~~ 237 (463)
T PRK06370 160 TNETIFSLDELPEHLVIIGGGYIGLEFAQMFRR--FGSEVTVIERGPRLLPREDEDVAAAVREILEREGIDVRLNAECIR 237 (463)
T ss_pred cchHhhCccccCCEEEEECCCHHHHHHHHHHHH--cCCeEEEEEcCCCCCcccCHHHHHHHHHHHHhCCCEEEeCCEEEE
Confidence 233332222347999999999999999999985 588999999999999888889999999999999999999999999
Q ss_pred cccCCC--eEEc---CCCcEEecCEEEEccCCCCCchhhhccccccccCCCCcEEeCCCeeecCCCCeEEecccCCCCcc
Q 017664 208 NTISDG--LIET---SSGETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITDIPEI 282 (368)
Q Consensus 208 i~~~~~--~v~~---~~g~~i~~d~vi~a~G~~p~~~~~~~~~l~~~~~~~g~i~vd~~~~~~~~~~ifa~GD~~~~~~~ 282 (368)
++.+++ .+.+ .+++++++|.+|+|+|.+|+.+.+.....++.++++|++.||+++|| +.|||||+|||++.+
T Consensus 238 i~~~~~~~~v~~~~~~~~~~i~~D~Vi~A~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~l~t-~~~~IyAiGD~~~~~-- 314 (463)
T PRK06370 238 VERDGDGIAVGLDCNGGAPEITGSHILVAVGRVPNTDDLGLEAAGVETDARGYIKVDDQLRT-TNPGIYAAGDCNGRG-- 314 (463)
T ss_pred EEEcCCEEEEEEEeCCCceEEEeCEEEECcCCCcCCCCcCchhhCceECCCCcEeECcCCcC-CCCCEEEeeecCCCc--
Confidence 876544 3332 23458999999999999999874432333446788899999999998 899999999999764
Q ss_pred chHHHHHHHHHHHHHHHHHHHcCCC---CCCccccccCCCeEEEeecCCccee--------EecCcc-----ccCcccee
Q 017664 283 KQGYLAQKHALVTAKNLKKLMMGRN---KGTMATYKPGYPIALVSLGRREGVA--------HFPFLT-----ISGRIPGW 346 (368)
Q Consensus 283 ~~~~~a~~~g~~aa~~i~~~l~g~~---~~~~~~~~~~~~~~~~~~g~~~~~~--------~~~~~~-----~~~~~~~~ 346 (368)
++++.|.+||+.||+||........ ..+...| ..|+++.+|+++++|.. .+++.. ..+...++
T Consensus 315 ~~~~~A~~~g~~aa~ni~~~~~~~~~~~~~p~~~~-~~p~ia~vG~te~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~ 393 (463)
T PRK06370 315 AFTHTAYNDARIVAANLLDGGRRKVSDRIVPYATY-TDPPLARVGMTEAEARKSGRRVLVGTRPMTRVGRAVEKGETQGF 393 (463)
T ss_pred ccHHHHHHHHHHHHHHHhCCCCCCcccccCCeEEE-cCCCcEeeeCCHHHHHHcCCCeEEEEEecCcchhHHhcCCCCEE
Confidence 4789999999999999973211000 0001112 25788999998876642 222221 24566889
Q ss_pred eeccccchhHHHHHcCCCC
Q 017664 347 IKSRDLFVGKTRKQLGLKP 365 (368)
Q Consensus 347 ~k~~~~~~~~~~~~lG~~~ 365 (368)
+|+ ++++++++|||+|+
T Consensus 394 ~kl--i~d~~~~~ilG~~~ 410 (463)
T PRK06370 394 MKV--VVDADTDRILGATI 410 (463)
T ss_pred EEE--EEECCCCEEEEEEE
Confidence 999 99999999999986
No 13
>PRK07846 mycothione reductase; Reviewed
Probab=100.00 E-value=2.3e-44 Score=341.33 Aligned_cols=339 Identities=22% Similarity=0.295 Sum_probs=250.7
Q ss_pred CCcEEEECCChHHHHHHHHhhcCCcEEEEcCCCceeee---cccee---------------e----eec---ccccc---
Q 017664 16 KKKVVVIGGGVGGSLLAYHIQSFADVVLIDEKEYFEIT---WASLR---------------A----VVE---PSFAV--- 67 (368)
Q Consensus 16 ~~~vvIIGaG~aGl~aA~~L~~g~~v~lie~~~~~~~~---~~~~~---------------~----~~~---~~~~~--- 67 (368)
++|++||||||+|.+||.++ .|.+|+|||++. +|+. ++... . .+. ..+..
T Consensus 1 ~yD~vVIG~G~~g~~aa~~~-~G~~V~lie~~~-~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~ 78 (451)
T PRK07846 1 HYDLIIIGTGSGNSILDERF-ADKRIAIVEKGT-FGGTCLNVGCIPTKMFVYAADVARTIREAARLGVDAELDGVRWPDI 78 (451)
T ss_pred CCCEEEECCCHHHHHHHHHH-CCCeEEEEeCCC-CCCcccCcCcchhHHHHHHHHHHHHHHHHHhCCccCCCCcCCHHHH
Confidence 38999999999999998764 599999999865 3321 10000 0 000 00000
Q ss_pred --------cceee-cccc----cCceeEEEeEEEEeeccEEEecCCeEEEecEEEEecCCCCCCCCchH---HHHHHHHH
Q 017664 68 --------RSVIN-HGDY----LSNVKIVVSTAVSITDTEVVTAGGQTFVYDYVVVATGHVESVPKSRT---ERLSQYEK 131 (368)
Q Consensus 68 --------~~~~~-~~~~----~~~~~~~~~~~~~~~~~~v~~~~g~~~~~d~lvlAtG~~~~~p~~~~---~~~~~~~~ 131 (368)
+.+.. ..++ ..+++++.+++..+++++|.+.+++.++||+||||||++|..|+++. ..+.+...
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~~~~V~v~~g~~~~~d~lViATGs~p~~p~i~g~~~~~~~~~~~ 158 (451)
T PRK07846 79 VSRVFGRIDPIAAGGEEYRGRDTPNIDVYRGHARFIGPKTLRTGDGEEITADQVVIAAGSRPVIPPVIADSGVRYHTSDT 158 (451)
T ss_pred HHHHHHHHHHHhccchhhhhhhhCCcEEEEEEEEEecCCEEEECCCCEEEeCEEEEcCCCCCCCCCCCCcCCccEEchHH
Confidence 00000 0111 13788999999999999999888888999999999999987776542 22233333
Q ss_pred HHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHcCCcEEEecceeeecccC
Q 017664 132 DFEKVKSANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVTLNTIS 211 (368)
Q Consensus 132 ~~~~~~~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~ 211 (368)
.......+++++|||+|++|+|+|..+.+ .+.+|+++++.+++++.+++++.+.+.+.+ +.+|++++++++++++.+
T Consensus 159 ~~~l~~~~~~vvIIGgG~iG~E~A~~l~~--~G~~Vtli~~~~~ll~~~d~~~~~~l~~l~-~~~v~i~~~~~v~~i~~~ 235 (451)
T PRK07846 159 IMRLPELPESLVIVGGGFIAAEFAHVFSA--LGVRVTVVNRSGRLLRHLDDDISERFTELA-SKRWDVRLGRNVVGVSQD 235 (451)
T ss_pred HhhhhhcCCeEEEECCCHHHHHHHHHHHH--cCCeEEEEEcCCccccccCHHHHHHHHHHH-hcCeEEEeCCEEEEEEEc
Confidence 33333457999999999999999999984 589999999999999888988888777655 467999999999988765
Q ss_pred CC--eEEcCCCcEEecCEEEEccCCCCCchhhhccccccccCCCCcEEeCCCeeecCCCCeEEecccCCCCccchHHHHH
Q 017664 212 DG--LIETSSGETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITDIPEIKQGYLAQ 289 (368)
Q Consensus 212 ~~--~v~~~~g~~i~~d~vi~a~G~~p~~~~~~~~~l~~~~~~~g~i~vd~~~~~~~~~~ifa~GD~~~~~~~~~~~~a~ 289 (368)
++ .+.+.+|+++++|.+++|+|++|+.+++....++++++++|++.||+++|| +.|||||+|||++.+. +++.|.
T Consensus 236 ~~~v~v~~~~g~~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~Vd~~~~T-s~p~IyA~GD~~~~~~--l~~~A~ 312 (451)
T PRK07846 236 GSGVTLRLDDGSTVEADVLLVATGRVPNGDLLDAAAAGVDVDEDGRVVVDEYQRT-SAEGVFALGDVSSPYQ--LKHVAN 312 (451)
T ss_pred CCEEEEEECCCcEeecCEEEEEECCccCccccCchhcCceECCCCcEeECCCccc-CCCCEEEEeecCCCcc--ChhHHH
Confidence 54 566778889999999999999999988765555557788999999999998 8999999999998644 789999
Q ss_pred HHHHHHHHHHHHHHc--CCCC--CCccccccCCCeEEEeecCCccee--------EecCcc-----ccCccceeeecccc
Q 017664 290 KHALVTAKNLKKLMM--GRNK--GTMATYKPGYPIALVSLGRREGVA--------HFPFLT-----ISGRIPGWIKSRDL 352 (368)
Q Consensus 290 ~~g~~aa~~i~~~l~--g~~~--~~~~~~~~~~~~~~~~~g~~~~~~--------~~~~~~-----~~~~~~~~~k~~~~ 352 (368)
+||+++|+||..... ..+. -+...| ..|+++.+|+++++|.. .+++.. ..+...+++|+ +
T Consensus 313 ~~g~~~a~ni~~~~~~~~~~~~~~p~~if-~~p~ia~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~Kl--i 389 (451)
T PRK07846 313 HEARVVQHNLLHPDDLIASDHRFVPAAVF-THPQIASVGLTENEARAAGLDITVKVQNYGDVAYGWAMEDTTGFVKL--I 389 (451)
T ss_pred HHHHHHHHHHcCCCCccccCCCCCCeEEE-CCCCcEeEeCCHHHHHhcCCCEEEEEEecCcchhhhhCCCCceEEEE--E
Confidence 999999999973210 0001 111122 25789999998887752 222221 24556799999 9
Q ss_pred chhHHHHHcCCCC
Q 017664 353 FVGKTRKQLGLKP 365 (368)
Q Consensus 353 ~~~~~~~~lG~~~ 365 (368)
+++++++|||+|+
T Consensus 390 ~d~~~~~ilG~~~ 402 (451)
T PRK07846 390 ADRDTGRLLGAHI 402 (451)
T ss_pred EECCCCEEEEEEE
Confidence 9999999999986
No 14
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=100.00 E-value=1.8e-44 Score=343.22 Aligned_cols=342 Identities=21% Similarity=0.235 Sum_probs=251.2
Q ss_pred CCCcEEEECCChHHHHHHHHhhc--CCcEEEEcCC--------Cceeeec---ccee---------------e----eec
Q 017664 15 EKKKVVVIGGGVGGSLLAYHIQS--FADVVLIDEK--------EYFEITW---ASLR---------------A----VVE 62 (368)
Q Consensus 15 ~~~~vvIIGaG~aGl~aA~~L~~--g~~v~lie~~--------~~~~~~~---~~~~---------------~----~~~ 62 (368)
+++|++||||||+|++||.++++ |.+|+|||++ +.+|+.. ..+. . .+.
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~~~~~~~~~~~~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~gi~ 81 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQTHHGPPHYAALGGTCVNVGCVPKKLMVTGAQYMDTLRESAGFGWE 81 (486)
T ss_pred CccCEEEECCChHHHHHHHHHHHhcCCEEEEEecccCccccccCCccCeecCcCCccHHHHHHHHHHHHHHHHhhccCee
Confidence 57999999999999999999874 8999999974 3455321 1100 0 000
Q ss_pred -----ccccccceee------------ccccc---CceeEEEeEEEEeeccEEEecC--------CeEEEecEEEEecCC
Q 017664 63 -----PSFAVRSVIN------------HGDYL---SNVKIVVSTAVSITDTEVVTAG--------GQTFVYDYVVVATGH 114 (368)
Q Consensus 63 -----~~~~~~~~~~------------~~~~~---~~~~~~~~~~~~~~~~~v~~~~--------g~~~~~d~lvlAtG~ 114 (368)
..+....+.. ..+.+ .++++++++..+++++++...+ .+.++||+||||||+
T Consensus 82 ~~~~~~~~d~~~~~~~~~~~v~~~~~~~~~~l~~~~gv~~i~G~a~f~~~~~v~V~~~~~~~~~~~~~~~~d~lIIATGs 161 (486)
T TIGR01423 82 FDRSSVKANWKALIAAKNKAVLDINKSYEGMFADTEGLTFFLGWGALEDKNVVLVRESADPKSAVKERLQAEHILLATGS 161 (486)
T ss_pred ccCCccccCHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEEEEEccCCEEEEeeccCCCCCcceEEECCEEEEecCC
Confidence 0011000000 01112 3789999999999998776532 357999999999999
Q ss_pred CCCCCCchHH-HHHHHHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhh-CCCCeEEEEecCcccccccCchhHHHHHHHH
Q 017664 115 VESVPKSRTE-RLSQYEKDFEKVKSANSVLIVGGGPTGVELAGEIAVD-FPDKKVILVHRGPKLLEFVGSRASQIALDWL 192 (368)
Q Consensus 115 ~~~~p~~~~~-~~~~~~~~~~~~~~~~~v~VvG~g~~~~e~a~~l~~~-~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l 192 (368)
.|..|++++. ...+..........+++++|||+|++|+|+|..+... ..+.+|+++++.+++++.+++++.+.+.+.|
T Consensus 162 ~p~~p~i~G~~~~~~~~~~~~~~~~~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il~~~d~~~~~~l~~~L 241 (486)
T TIGR01423 162 WPQMLGIPGIEHCISSNEAFYLDEPPRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMILRGFDSTLRKELTKQL 241 (486)
T ss_pred CCCCCCCCChhheechhhhhccccCCCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCccccccCHHHHHHHHHHH
Confidence 9887776532 2223332222223479999999999999999877531 1378999999999999999999999999999
Q ss_pred HcCCcEEEecceeeecccCC-C--eEEcCCCcEEecCEEEEccCCCCCchhhhccccccccCCCCcEEeCCCeeecCCCC
Q 017664 193 TSKKVEVILNQSVTLNTISD-G--LIETSSGETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKN 269 (368)
Q Consensus 193 ~~~gv~i~~~~~v~~i~~~~-~--~v~~~~g~~i~~d~vi~a~G~~p~~~~~~~~~l~~~~~~~g~i~vd~~~~~~~~~~ 269 (368)
++.||++++++.+++++.++ + .+.+.+|+++++|.+|+++|++|+.+++....++++++++|+|.||+++|| +.||
T Consensus 242 ~~~GI~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D~vl~a~G~~Pn~~~l~l~~~gl~~~~~G~I~Vd~~l~T-s~~~ 320 (486)
T TIGR01423 242 RANGINIMTNENPAKVTLNADGSKHVTFESGKTLDVDVVMMAIGRVPRTQTLQLDKVGVELTKKGAIQVDEFSRT-NVPN 320 (486)
T ss_pred HHcCCEEEcCCEEEEEEEcCCceEEEEEcCCCEEEcCEEEEeeCCCcCcccCCchhhCceECCCCCEecCCCCcC-CCCC
Confidence 99999999999999887543 2 566777889999999999999999987654445557788899999999998 8999
Q ss_pred eEEecccCCCCccchHHHHHHHHHHHHHHHHHHHcCCCCC-------CccccccCCCeEEEeecCCcceeEe--------
Q 017664 270 VFAIGDITDIPEIKQGYLAQKHALVTAKNLKKLMMGRNKG-------TMATYKPGYPIALVSLGRREGVAHF-------- 334 (368)
Q Consensus 270 ifa~GD~~~~~~~~~~~~a~~~g~~aa~~i~~~l~g~~~~-------~~~~~~~~~~~~~~~~g~~~~~~~~-------- 334 (368)
|||+|||++.+. +++.|.+||+.+|+||+ |.... +...|+ .|+++.+|+++++|....
T Consensus 321 IyA~GDv~~~~~--l~~~A~~qG~~aa~ni~----g~~~~~~~~~~vp~~vft-~peia~vGlte~eA~~~~~~~~~~~~ 393 (486)
T TIGR01423 321 IYAIGDVTDRVM--LTPVAINEGAAFVDTVF----GNKPRKTDHTRVASAVFS-IPPIGTCGLVEEDAAKKFEKVAVYES 393 (486)
T ss_pred EEEeeecCCCcc--cHHHHHHHHHHHHHHHh----CCCCcccCCCCCCEEEeC-CCceEEeeCCHHHHHhcCCceEEEEE
Confidence 999999997644 78999999999999997 32211 111222 378999999988775432
Q ss_pred cCcc----ccCcc--ceeeeccccchhHHHHHcCCCCC
Q 017664 335 PFLT----ISGRI--PGWIKSRDLFVGKTRKQLGLKPT 366 (368)
Q Consensus 335 ~~~~----~~~~~--~~~~k~~~~~~~~~~~~lG~~~~ 366 (368)
.+.. ..+.. .+++|+ ++++++++|||+|+.
T Consensus 394 ~~~~~~~~~~~~~~~~g~~Kl--v~d~~~~~iLGa~iv 429 (486)
T TIGR01423 394 SFTPLMHNISGSKYKKFVAKI--VTNHADGTVLGVHLL 429 (486)
T ss_pred eeCchhhhhccCccCceEEEE--EEECCCCEEEEEEEE
Confidence 1111 11222 578998 999999999999863
No 15
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=100.00 E-value=1.4e-43 Score=336.36 Aligned_cols=340 Identities=22% Similarity=0.285 Sum_probs=248.6
Q ss_pred CCCcEEEECCChHHHHHHHHhhcCCcEEEEcCCCceeee---cccee---------------e----eec---cccc---
Q 017664 15 EKKKVVVIGGGVGGSLLAYHIQSFADVVLIDEKEYFEIT---WASLR---------------A----VVE---PSFA--- 66 (368)
Q Consensus 15 ~~~~vvIIGaG~aGl~aA~~L~~g~~v~lie~~~~~~~~---~~~~~---------------~----~~~---~~~~--- 66 (368)
+++|++|||+||+|..||.++ .|.+|+|||++. +|+. +..+. . .+. ..+.
T Consensus 1 ~~yD~vvIG~G~~g~~aa~~~-~g~~V~lie~~~-~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~d~~~ 78 (452)
T TIGR03452 1 RHYDLIIIGTGSGNSIPDPRF-ADKRIAIVEKGT-FGGTCLNVGCIPTKMFVYAAEVAQSIGESARLGIDAEIDSVRWPD 78 (452)
T ss_pred CCcCEEEECCCHHHHHHHHHH-CCCeEEEEeCCC-CCCeeeccCccchHHHHHHHHHHHHHHHhhccCeeCCCCccCHHH
Confidence 358999999999999987554 599999999865 3321 10000 0 000 0000
Q ss_pred ---------ccceeec-ccc-c----CceeEEEeEEEEeeccEEEecCCeEEEecEEEEecCCCCCCCCc-hHH--HHHH
Q 017664 67 ---------VRSVINH-GDY-L----SNVKIVVSTAVSITDTEVVTAGGQTFVYDYVVVATGHVESVPKS-RTE--RLSQ 128 (368)
Q Consensus 67 ---------~~~~~~~-~~~-~----~~~~~~~~~~~~~~~~~v~~~~g~~~~~d~lvlAtG~~~~~p~~-~~~--~~~~ 128 (368)
...+... ..+ . .+++++.+.....+.++|.+.+++.++||+||||||+.|..|+. ... .+.+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~V~~~~g~~~~~d~lIiATGs~p~~p~~~~~~~~~~~~ 158 (452)
T TIGR03452 79 IVSRVFGDRIDPIAAGGEDYRRGDETPNIDVYDGHARFVGPRTLRTGDGEEITGDQIVIAAGSRPYIPPAIADSGVRYHT 158 (452)
T ss_pred HHHHhhhhHhHHHhccchHhhhhcccCCeEEEEEEEEEecCCEEEECCCcEEEeCEEEEEECCCCCCCCCCCCCCCEEEc
Confidence 0000000 011 1 47899999999999999988888889999999999999988763 211 1223
Q ss_pred HHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHcCCcEEEecceeeec
Q 017664 129 YEKDFEKVKSANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVTLN 208 (368)
Q Consensus 129 ~~~~~~~~~~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i 208 (368)
.....+....+++++|||+|++|+|+|..|.+ .+.+|+++++.+++++.+++++...+.+.++ .+|++++++.+.++
T Consensus 159 ~~~~~~l~~~~k~vvVIGgG~ig~E~A~~l~~--~G~~Vtli~~~~~ll~~~d~~~~~~l~~~~~-~gI~i~~~~~V~~i 235 (452)
T TIGR03452 159 NEDIMRLPELPESLVIVGGGYIAAEFAHVFSA--LGTRVTIVNRSTKLLRHLDEDISDRFTEIAK-KKWDIRLGRNVTAV 235 (452)
T ss_pred HHHHHhhhhcCCcEEEECCCHHHHHHHHHHHh--CCCcEEEEEccCccccccCHHHHHHHHHHHh-cCCEEEeCCEEEEE
Confidence 33333322357999999999999999999984 5889999999999888888888888776554 68999999999998
Q ss_pred ccCCC--eEEcCCCcEEecCEEEEccCCCCCchhhhccccccccCCCCcEEeCCCeeecCCCCeEEecccCCCCccchHH
Q 017664 209 TISDG--LIETSSGETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITDIPEIKQGY 286 (368)
Q Consensus 209 ~~~~~--~v~~~~g~~i~~d~vi~a~G~~p~~~~~~~~~l~~~~~~~g~i~vd~~~~~~~~~~ifa~GD~~~~~~~~~~~ 286 (368)
+.+++ .+.+.+|+++++|.+++++|++|+.+++....++++++++|++.||+++|| +.|+|||+|||++.+ ++++
T Consensus 236 ~~~~~~v~v~~~~g~~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~vd~~~~T-s~~~IyA~GD~~~~~--~l~~ 312 (452)
T TIGR03452 236 EQDGDGVTLTLDDGSTVTADVLLVATGRVPNGDLLDAEAAGVEVDEDGRIKVDEYGRT-SARGVWALGDVSSPY--QLKH 312 (452)
T ss_pred EEcCCeEEEEEcCCCEEEcCEEEEeeccCcCCCCcCchhcCeeECCCCcEeeCCCccc-CCCCEEEeecccCcc--cChh
Confidence 76554 566677889999999999999999988665545557788899999999997 899999999999864 4789
Q ss_pred HHHHHHHHHHHHHHHHHcCCCC--CCc--cccccCCCeEEEeecCCccee--------EecCc-----cccCccceeeec
Q 017664 287 LAQKHALVTAKNLKKLMMGRNK--GTM--ATYKPGYPIALVSLGRREGVA--------HFPFL-----TISGRIPGWIKS 349 (368)
Q Consensus 287 ~a~~~g~~aa~~i~~~l~g~~~--~~~--~~~~~~~~~~~~~~g~~~~~~--------~~~~~-----~~~~~~~~~~k~ 349 (368)
.|.+||+.+|+||......... ... ..| ..|+++.+|+++.+|.. ..++. ...+...+++|+
T Consensus 313 ~A~~~g~~~a~ni~~~~~~~~~~~~~~p~~i~-t~p~ia~vGlte~ea~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~Kl 391 (452)
T TIGR03452 313 VANAEARVVKHNLLHPNDLRKMPHDFVPSAVF-THPQIATVGLTEQEAREAGHDITVKIQNYGDVAYGWAMEDTTGFCKL 391 (452)
T ss_pred HHHHHHHHHHHHhcCCCCcccCCCCCCCeEEE-CCCCeeeeeCCHHHHHhcCCCeEEEEecCCchhhHhhcCCCCeEEEE
Confidence 9999999999999732100000 000 112 25789999998887742 22222 123566799999
Q ss_pred cccchhHHHHHcCCCC
Q 017664 350 RDLFVGKTRKQLGLKP 365 (368)
Q Consensus 350 ~~~~~~~~~~~lG~~~ 365 (368)
++++++++|||+|+
T Consensus 392 --v~d~~t~~ilG~~~ 405 (452)
T TIGR03452 392 --IADRDTGKLLGAHI 405 (452)
T ss_pred --EEECCCCEEEEEEE
Confidence 99999999999986
No 16
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=100.00 E-value=3.9e-44 Score=342.47 Aligned_cols=341 Identities=23% Similarity=0.273 Sum_probs=248.2
Q ss_pred CcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeeccce---e-----------eeec----------cccccc---
Q 017664 17 KKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITWASL---R-----------AVVE----------PSFAVR--- 68 (368)
Q Consensus 17 ~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~~~~---~-----------~~~~----------~~~~~~--- 68 (368)
+|++||||||||++||.+|+ +|.+|+|||+++ +|+.+... . .... ..+...
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~-~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 79 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGP-LGGTCVNVGCVPSKMLLRAAEVAHYARKPPFGGLAATVAVDFGELL 79 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCc-ccCCeeeecEEccHHHHHHHHHHHHhhccCcccccCCCccCHHHHH
Confidence 69999999999999999998 599999999976 55432110 0 0000 000000
Q ss_pred ----ce-e---e--ccccc--CceeEEEeEEEEeeccEEEecCC-eEEEecEEEEecCCCCCCCCchH---HHHHHHHHH
Q 017664 69 ----SV-I---N--HGDYL--SNVKIVVSTAVSITDTEVVTAGG-QTFVYDYVVVATGHVESVPKSRT---ERLSQYEKD 132 (368)
Q Consensus 69 ----~~-~---~--~~~~~--~~~~~~~~~~~~~~~~~v~~~~g-~~~~~d~lvlAtG~~~~~p~~~~---~~~~~~~~~ 132 (368)
.. . . ..+++ .+++++.+++...+.+++...++ ..++||+||||||+.|..|++++ ..+.+....
T Consensus 80 ~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~~~~~~v~v~~g~~~~~~~~lIiATGs~p~~p~i~G~~~~~~~~~~~~ 159 (463)
T TIGR02053 80 EGKREVVEELRHEKYEDVLSSYGVDYLRGRARFKDPKTVKVDLGREVRGAKRFLIATGARPAIPPIPGLKEAGYLTSEEA 159 (463)
T ss_pred HHHHHHHHHHhhhhHHHHHHhCCcEEEEEEEEEccCCEEEEcCCeEEEEeCEEEEcCCCCCCCCCCCCcccCceECchhh
Confidence 00 0 0 11111 26888999998888888887765 46899999999999977665442 223333333
Q ss_pred HHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHcCCcEEEecceeeecccCC
Q 017664 133 FEKVKSANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVTLNTISD 212 (368)
Q Consensus 133 ~~~~~~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~ 212 (368)
......+++++|||+|++|+|+|..|.+ .+.+|+++++.+++++.+++++...+.+.+++.||+++++++|++++.++
T Consensus 160 ~~~~~~~~~vvIIGgG~~g~E~A~~l~~--~g~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~ 237 (463)
T TIGR02053 160 LALDRIPESLAVIGGGAIGVELAQAFAR--LGSEVTILQRSDRLLPREEPEISAAVEEALAEEGIEVVTSAQVKAVSVRG 237 (463)
T ss_pred hCcccCCCeEEEECCCHHHHHHHHHHHH--cCCcEEEEEcCCcCCCccCHHHHHHHHHHHHHcCCEEEcCcEEEEEEEcC
Confidence 2222346899999999999999999985 58899999999999998999999999999999999999999999887654
Q ss_pred C--eEEcC---CCcEEecCEEEEccCCCCCchhhhccccccccCCCCcEEeCCCeeecCCCCeEEecccCCCCccchHHH
Q 017664 213 G--LIETS---SGETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITDIPEIKQGYL 287 (368)
Q Consensus 213 ~--~v~~~---~g~~i~~d~vi~a~G~~p~~~~~~~~~l~~~~~~~g~i~vd~~~~~~~~~~ifa~GD~~~~~~~~~~~~ 287 (368)
+ .+.+. +++++++|.+|+|+|.+|+.+.+.....++.++++|++.||+++|| +.|||||+|||++.+ ++++.
T Consensus 238 ~~~~v~~~~~~~~~~i~~D~ViiA~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~T-s~~~VyAiGD~~~~~--~~~~~ 314 (463)
T TIGR02053 238 GGKIITVEKPGGQGEVEADELLVATGRRPNTDGLGLEKAGVKLDERGGILVDETLRT-SNPGIYAAGDVTGGL--QLEYV 314 (463)
T ss_pred CEEEEEEEeCCCceEEEeCEEEEeECCCcCCCCCCccccCCEECCCCcEeECCCccC-CCCCEEEeeecCCCc--ccHhH
Confidence 4 33332 2358999999999999999874333333446788899999999998 899999999999864 47899
Q ss_pred HHHHHHHHHHHHHHHHcCC-CC--CCccccccCCCeEEEeecCCcceeE--------ecCcc-----ccCccceeeeccc
Q 017664 288 AQKHALVTAKNLKKLMMGR-NK--GTMATYKPGYPIALVSLGRREGVAH--------FPFLT-----ISGRIPGWIKSRD 351 (368)
Q Consensus 288 a~~~g~~aa~~i~~~l~g~-~~--~~~~~~~~~~~~~~~~~g~~~~~~~--------~~~~~-----~~~~~~~~~k~~~ 351 (368)
|.+||+.||.||+...... +. .+...| ..|+++.+|+++++|... +++.. +.+...+++|+
T Consensus 315 A~~~g~~aa~ni~~~~~~~~~~~~~p~~~~-~~p~~a~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~kl-- 391 (463)
T TIGR02053 315 AAKEGVVAAENALGGANAKLDLLVIPRVVF-TDPAVASVGLTEAEAQKAGIECDCRTLPLTNVPRARINRDTRGFIKL-- 391 (463)
T ss_pred HHHHHHHHHHHhcCCCCCccCcCCCCeEEe-ccCceEEEeCCHHHHHhcCCCeEEEEEecccchHHHhcCCCcEEEEE--
Confidence 9999999999997321000 00 011112 358899999988766432 22211 24556889998
Q ss_pred cchhHHHHHcCCCCC
Q 017664 352 LFVGKTRKQLGLKPT 366 (368)
Q Consensus 352 ~~~~~~~~~lG~~~~ 366 (368)
++++++++|||+|+.
T Consensus 392 i~d~~~~~ilG~~~~ 406 (463)
T TIGR02053 392 VAEPGTGKVLGVQVV 406 (463)
T ss_pred EEECCCCEEEEEEEE
Confidence 999999999999863
No 17
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=8.9e-44 Score=340.08 Aligned_cols=338 Identities=22% Similarity=0.309 Sum_probs=248.6
Q ss_pred CCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeeccce---eee-------------------e---ccccccc
Q 017664 15 EKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITWASL---RAV-------------------V---EPSFAVR 68 (368)
Q Consensus 15 ~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~~~~---~~~-------------------~---~~~~~~~ 68 (368)
..+|++||||||||++||..|+ +|.+|+|+|+++ +|+.+... ... . ...+...
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~-~GG~c~~~gciP~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 81 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK-LGGTCLNRGCIPSKALLHAAERADEARHSEDFGIKAENVGIDFK 81 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc-cccceeecccCCcHHHHHhhhHHHHHHHHHhcCcccCCCccCHH
Confidence 4689999999999999999997 599999999987 65433111 000 0 0000000
Q ss_pred ceeec------------ccc--cCceeEEEeEEEEeeccEEEec--C-CeEEEecEEEEecCCCCCCC-CchH--HHHHH
Q 017664 69 SVINH------------GDY--LSNVKIVVSTAVSITDTEVVTA--G-GQTFVYDYVVVATGHVESVP-KSRT--ERLSQ 128 (368)
Q Consensus 69 ~~~~~------------~~~--~~~~~~~~~~~~~~~~~~v~~~--~-g~~~~~d~lvlAtG~~~~~p-~~~~--~~~~~ 128 (368)
.+..+ ... ..+++++.+++..++++++... + ++.++||+||||||+.|..| +.+. ..+.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~~~v~~~~~~~~~~~d~lViAtGs~p~~~pg~~~~~~~v~~ 161 (462)
T PRK06416 82 KVQEWKNGVVNRLTGGVEGLLKKNKVDIIRGEAKLVDPNTVRVMTEDGEQTYTAKNIILATGSRPRELPGIEIDGRVIWT 161 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEecCCCcEEEEeCEEEEeCCCCCCCCCCCCCCCCeEEc
Confidence 00000 011 1378899999999988765443 2 46899999999999998654 3321 12223
Q ss_pred HHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHcCCcEEEecceeeec
Q 017664 129 YEKDFEKVKSANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVTLN 208 (368)
Q Consensus 129 ~~~~~~~~~~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i 208 (368)
..........+++++|||+|++|+|+|..+.+ .+.+|+++++.+++++.+++++...+.+.++++||++++++.+.++
T Consensus 162 ~~~~~~~~~~~~~vvVvGgG~~g~E~A~~l~~--~g~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~gV~i~~~~~V~~i 239 (462)
T PRK06416 162 SDEALNLDEVPKSLVVIGGGYIGVEFASAYAS--LGAEVTIVEALPRILPGEDKEISKLAERALKKRGIKIKTGAKAKKV 239 (462)
T ss_pred chHhhCccccCCeEEEECCCHHHHHHHHHHHH--cCCeEEEEEcCCCcCCcCCHHHHHHHHHHHHHcCCEEEeCCEEEEE
Confidence 33333223357899999999999999999885 5889999999999999899999999999999999999999999999
Q ss_pred ccCCC--eEEcCCC---cEEecCEEEEccCCCCCchhhhccccccccCCCCcEEeCCCeeecCCCCeEEecccCCCCccc
Q 017664 209 TISDG--LIETSSG---ETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITDIPEIK 283 (368)
Q Consensus 209 ~~~~~--~v~~~~g---~~i~~d~vi~a~G~~p~~~~~~~~~l~~~~~~~g~i~vd~~~~~~~~~~ifa~GD~~~~~~~~ 283 (368)
+.+++ .+.+.++ +++++|.+|+++|.+|+.+++.....++.++ +|++.||+++|+ +.|+|||+|||++.+ +
T Consensus 240 ~~~~~~v~v~~~~gg~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~~~-~g~i~vd~~~~t-~~~~VyAiGD~~~~~--~ 315 (462)
T PRK06416 240 EQTDDGVTVTLEDGGKEETLEADYVLVAVGRRPNTENLGLEELGVKTD-RGFIEVDEQLRT-NVPNIYAIGDIVGGP--M 315 (462)
T ss_pred EEeCCEEEEEEEeCCeeEEEEeCEEEEeeCCccCCCCCCchhcCCeec-CCEEeECCCCcc-CCCCEEEeeecCCCc--c
Confidence 87654 4555555 6799999999999999988764333344666 899999999998 899999999999754 3
Q ss_pred hHHHHHHHHHHHHHHHHHHHcCCCCC------CccccccCCCeEEEeecCCcceeE--------ecCc-----cccCccc
Q 017664 284 QGYLAQKHALVTAKNLKKLMMGRNKG------TMATYKPGYPIALVSLGRREGVAH--------FPFL-----TISGRIP 344 (368)
Q Consensus 284 ~~~~a~~~g~~aa~~i~~~l~g~~~~------~~~~~~~~~~~~~~~~g~~~~~~~--------~~~~-----~~~~~~~ 344 (368)
+++.|.+||+.+|.||.. .+.. +...| ..|.++.+|+++++|... .++. .+.+...
T Consensus 316 ~~~~A~~~g~~aa~ni~~----~~~~~~~~~~~~~~~-~~~~~a~vG~te~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~ 390 (462)
T PRK06416 316 LAHKASAEGIIAAEAIAG----NPHPIDYRGIPAVTY-THPEVASVGLTEAKAKEEGFDVKVVKFPFAGNGKALALGETD 390 (462)
T ss_pred hHHHHHHHHHHHHHHHcC----CCCCCCCCCCCeEEE-CCCceEEEeCCHHHHHhcCCCeEEEEEecCcChHhHhcCCCc
Confidence 789999999999999973 2210 00111 257889999988776532 1211 1345667
Q ss_pred eeeeccccchhHHHHHcCCCCC
Q 017664 345 GWIKSRDLFVGKTRKQLGLKPT 366 (368)
Q Consensus 345 ~~~k~~~~~~~~~~~~lG~~~~ 366 (368)
+++|+ ++++++++|||+|+.
T Consensus 391 g~~kl--i~~~~~~~ilG~~~~ 410 (462)
T PRK06416 391 GFVKL--IFDKKDGEVLGAHMV 410 (462)
T ss_pred eEEEE--EEECCCCEEEEEEEE
Confidence 89999 999999999999863
No 18
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=1.8e-43 Score=337.76 Aligned_cols=341 Identities=18% Similarity=0.253 Sum_probs=245.1
Q ss_pred CCCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeecc---ceee-----------eec-----ccc------cc
Q 017664 14 VEKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITWA---SLRA-----------VVE-----PSF------AV 67 (368)
Q Consensus 14 ~~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~~---~~~~-----------~~~-----~~~------~~ 67 (368)
+.++|++||||||||++||.+|+ .|.+|+|||++. +|+... .+.. ... ... ..
T Consensus 2 ~~~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~~-~GG~c~~~gciPsk~l~~~~~~~~~~~~~~~~~gi~~~~~~~~ 80 (466)
T PRK07818 2 MTHYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKKY-WGGVCLNVGCIPSKALLRNAELAHIFTKEAKTFGISGEVTFDY 80 (466)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHhCCCeEEEEecCC-CCCceecCCccccHHHHhhHHHHHHHHHHHHhcCCCcCcccCH
Confidence 34699999999999999999997 599999999863 332211 0000 000 000 00
Q ss_pred cceeec------------ccc--cCceeEEEeEEEEeeccEEEe--cCC--eEEEecEEEEecCCCCCC-CCchH-HHHH
Q 017664 68 RSVINH------------GDY--LSNVKIVVSTAVSITDTEVVT--AGG--QTFVYDYVVVATGHVESV-PKSRT-ERLS 127 (368)
Q Consensus 68 ~~~~~~------------~~~--~~~~~~~~~~~~~~~~~~v~~--~~g--~~~~~d~lvlAtG~~~~~-p~~~~-~~~~ 127 (368)
...... ... ..++..+.+....++.+++.. .++ ..++||+||||||+.|.. |+.+. ..+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~g~~~~~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~~pg~~~~~~v~ 160 (466)
T PRK07818 81 GAAFDRSRKVAEGRVKGVHFLMKKNKITEIHGYGTFTDANTLEVDLNDGGTETVTFDNAIIATGSSTRLLPGTSLSENVV 160 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEcCCCEEEEEecCCCeeEEEcCEEEEeCCCCCCCCCCCCCCCcEE
Confidence 000000 000 125677888888888876544 344 468999999999999865 44321 1222
Q ss_pred HHHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHcCCcEEEecceeee
Q 017664 128 QYEKDFEKVKSANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVTL 207 (368)
Q Consensus 128 ~~~~~~~~~~~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~ 207 (368)
+..........+++++|+|+|++|+|+|..+++ .+.+|+++++.+++++..++++...+.+.|+++||++++++.|++
T Consensus 161 ~~~~~~~~~~~~~~vvVIGgG~ig~E~A~~l~~--~G~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~gV~i~~~~~v~~ 238 (466)
T PRK07818 161 TYEEQILSRELPKSIVIAGAGAIGMEFAYVLKN--YGVDVTIVEFLDRALPNEDAEVSKEIAKQYKKLGVKILTGTKVES 238 (466)
T ss_pred chHHHhccccCCCeEEEECCcHHHHHHHHHHHH--cCCeEEEEecCCCcCCccCHHHHHHHHHHHHHCCCEEEECCEEEE
Confidence 333222222357899999999999999999985 588999999999999989999999999999999999999999999
Q ss_pred cccCCC--eEEcC--CC--cEEecCEEEEccCCCCCchhhhccccccccCCCCcEEeCCCeeecCCCCeEEecccCCCCc
Q 017664 208 NTISDG--LIETS--SG--ETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITDIPE 281 (368)
Q Consensus 208 i~~~~~--~v~~~--~g--~~i~~d~vi~a~G~~p~~~~~~~~~l~~~~~~~g~i~vd~~~~~~~~~~ifa~GD~~~~~~ 281 (368)
++.+++ .+.+. +| +++++|.+|+++|++|+.+++.....++.++++|++.||+++|| +.|||||+|||++.+
T Consensus 239 i~~~~~~~~v~~~~~~g~~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~g~i~vd~~~~T-s~p~IyAiGD~~~~~- 316 (466)
T PRK07818 239 IDDNGSKVTVTVSKKDGKAQELEADKVLQAIGFAPRVEGYGLEKTGVALTDRGAIAIDDYMRT-NVPHIYAIGDVTAKL- 316 (466)
T ss_pred EEEeCCeEEEEEEecCCCeEEEEeCEEEECcCcccCCCCCCchhcCcEECCCCcEeeCCCccc-CCCCEEEEeecCCCc-
Confidence 876554 33332 56 47999999999999999886543344446778899999999998 899999999999753
Q ss_pred cchHHHHHHHHHHHHHHHHHHHcCCCCCCcccc--c-----cCCCeEEEeecCCcceeE--------ecCc-----cccC
Q 017664 282 IKQGYLAQKHALVTAKNLKKLMMGRNKGTMATY--K-----PGYPIALVSLGRREGVAH--------FPFL-----TISG 341 (368)
Q Consensus 282 ~~~~~~a~~~g~~aa~~i~~~l~g~~~~~~~~~--~-----~~~~~~~~~~g~~~~~~~--------~~~~-----~~~~ 341 (368)
++++.|.+||+.||+||+ |.+..+...| . ..|+++.+|+++++|... +++. ...+
T Consensus 317 -~l~~~A~~~g~~aa~~i~----g~~~~~~~~~~~~p~~~~~~p~~a~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~ 391 (466)
T PRK07818 317 -QLAHVAEAQGVVAAETIA----GAETLELGDYRMMPRATFCQPQVASFGLTEEQAREEGYDVKVAKFPFTANGKAHGLG 391 (466)
T ss_pred -ccHhHHHHHHHHHHHHHc----CCCCCccCccCCCCeEEECCCCeEEEeCCHHHHHhCCCcEEEEEEECCccchhhhcC
Confidence 489999999999999997 3321111111 1 257899999988776432 2221 1245
Q ss_pred ccceeeeccccchhHHHHHcCCCCC
Q 017664 342 RIPGWIKSRDLFVGKTRKQLGLKPT 366 (368)
Q Consensus 342 ~~~~~~k~~~~~~~~~~~~lG~~~~ 366 (368)
...+++|+ ++++++++|||+|+.
T Consensus 392 ~~~g~~Kl--v~~~~~~~ilG~~~v 414 (466)
T PRK07818 392 DPTGFVKL--VADAKYGELLGGHLI 414 (466)
T ss_pred CCCeEEEE--EEECCCCeEEEEEEE
Confidence 66789999 999999999999863
No 19
>PLN02546 glutathione reductase
Probab=100.00 E-value=1.7e-43 Score=340.00 Aligned_cols=339 Identities=21% Similarity=0.240 Sum_probs=249.0
Q ss_pred CCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCC---------Cceeeecc--------ce----------ee----ee-
Q 017664 15 EKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEK---------EYFEITWA--------SL----------RA----VV- 61 (368)
Q Consensus 15 ~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~---------~~~~~~~~--------~~----------~~----~~- 61 (368)
.++|++||||||||+.||..++ .|.+|+|||+. ..+|+... .+ .. .+
T Consensus 78 ~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~~~~~~~~~~~~GGtC~n~GCiPsK~l~~aa~~~~~~~~~~~~g~~ 157 (558)
T PLN02546 78 YDFDLFTIGAGSGGVRASRFASNFGASAAVCELPFATISSDTLGGVGGTCVLRGCVPKKLLVYASKYSHEFEESRGFGWK 157 (558)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccccccccccCCCccCcccCcchHHHHHHHHHHHHHHHHHhhhhcCcc
Confidence 4689999999999999999998 59999999962 22332110 00 00 00
Q ss_pred ---ccccccccee------------eccccc--CceeEEEeEEEEeeccEEEecCCeEEEecEEEEecCCCCCCCCchH-
Q 017664 62 ---EPSFAVRSVI------------NHGDYL--SNVKIVVSTAVSITDTEVVTAGGQTFVYDYVVVATGHVESVPKSRT- 123 (368)
Q Consensus 62 ---~~~~~~~~~~------------~~~~~~--~~~~~~~~~~~~~~~~~v~~~~g~~~~~d~lvlAtG~~~~~p~~~~- 123 (368)
...+....+. .+.+.+ .+++++.+++..++++++.. +|+.+.||+||||||++|..|++++
T Consensus 158 ~~~~~~~d~~~~~~~k~~~~~~l~~~~~~~l~~~gV~~i~G~a~~vd~~~V~v-~G~~~~~D~LVIATGs~p~~P~IpG~ 236 (558)
T PLN02546 158 YETEPKHDWNTLIANKNAELQRLTGIYKNILKNAGVTLIEGRGKIVDPHTVDV-DGKLYTARNILIAVGGRPFIPDIPGI 236 (558)
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEccCCEEEE-CCEEEECCEEEEeCCCCCCCCCCCCh
Confidence 0001000000 011111 26899999999999998876 5778999999999999987776653
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHcCCcEEEecc
Q 017664 124 ERLSQYEKDFEKVKSANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQ 203 (368)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~ 203 (368)
+.+.+..........+++++|||+|++|+|+|..+.+ .+.+|+++++.+++++.+++++...+.+.|+++||++++++
T Consensus 237 ~~v~~~~~~l~~~~~~k~V~VIGgG~iGvE~A~~L~~--~g~~Vtlv~~~~~il~~~d~~~~~~l~~~L~~~GV~i~~~~ 314 (558)
T PLN02546 237 EHAIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFNG--LKSDVHVFIRQKKVLRGFDEEVRDFVAEQMSLRGIEFHTEE 314 (558)
T ss_pred hhccCHHHHHhccccCCeEEEECCCHHHHHHHHHHHh--cCCeEEEEEeccccccccCHHHHHHHHHHHHHCCcEEEeCC
Confidence 2233444443333468999999999999999999884 58899999999999999999999999999999999999999
Q ss_pred eeeecccC-CC--eEEcCCCcEEecCEEEEccCCCCCchhhhccccccccCCCCcEEeCCCeeecCCCCeEEecccCCCC
Q 017664 204 SVTLNTIS-DG--LIETSSGETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITDIP 280 (368)
Q Consensus 204 ~v~~i~~~-~~--~v~~~~g~~i~~d~vi~a~G~~p~~~~~~~~~l~~~~~~~g~i~vd~~~~~~~~~~ifa~GD~~~~~ 280 (368)
.+.+++.. ++ .+.+.+++...+|.+|+++|++|+.+++....++++++++|+|.||+++|| +.|||||+|||++.+
T Consensus 315 ~v~~i~~~~~g~v~v~~~~g~~~~~D~Viva~G~~Pnt~~L~le~~gl~~d~~G~I~VD~~l~T-s~p~IYAaGDv~~~~ 393 (558)
T PLN02546 315 SPQAIIKSADGSLSLKTNKGTVEGFSHVMFATGRKPNTKNLGLEEVGVKMDKNGAIEVDEYSRT-SVPSIWAVGDVTDRI 393 (558)
T ss_pred EEEEEEEcCCCEEEEEECCeEEEecCEEEEeeccccCCCcCChhhcCCcCCCCCcEeECCCcee-CCCCEEEeeccCCCc
Confidence 99988653 33 344555555558999999999999986543334447788899999999998 899999999999764
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHcCCCCC-Ccccccc-----CCCeEEEeecCCcceeE--------ecCcc----ccC-
Q 017664 281 EIKQGYLAQKHALVTAKNLKKLMMGRNKG-TMATYKP-----GYPIALVSLGRREGVAH--------FPFLT----ISG- 341 (368)
Q Consensus 281 ~~~~~~~a~~~g~~aa~~i~~~l~g~~~~-~~~~~~~-----~~~~~~~~~g~~~~~~~--------~~~~~----~~~- 341 (368)
. +++.|.+||+.+|+||. |.+.. ..+...| .|+++.+|+++++|... .++.. +.+
T Consensus 394 ~--l~~~A~~~g~~~a~~i~----g~~~~~~~~~~vp~~vft~Peia~VGlte~eA~~~g~~~~~~~~~~~~~~~~~~~~ 467 (558)
T PLN02546 394 N--LTPVALMEGGALAKTLF----GNEPTKPDYRAVPSAVFSQPPIGQVGLTEEQAIEEYGDVDVFTANFRPLKATLSGL 467 (558)
T ss_pred c--cHHHHHHHHHHHHHHHc----CCCCCcCCCCCCCEEEeCCchHhhccCCHHHHHHcCCCeEEEEEecccchhhhhCC
Confidence 4 78899999999999997 32211 0011111 47888899988876542 11111 122
Q ss_pred ccceeeeccccchhHHHHHcCCCC
Q 017664 342 RIPGWIKSRDLFVGKTRKQLGLKP 365 (368)
Q Consensus 342 ~~~~~~k~~~~~~~~~~~~lG~~~ 365 (368)
...+++|+ ++++++++|||+|+
T Consensus 468 ~~~g~~Kl--v~d~~t~~ILGa~i 489 (558)
T PLN02546 468 PDRVFMKL--IVCAKTNKVLGVHM 489 (558)
T ss_pred CCcEEEEE--EEECCCCEEEEEEE
Confidence 34689999 99999999999986
No 20
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=100.00 E-value=3.7e-43 Score=333.41 Aligned_cols=344 Identities=19% Similarity=0.216 Sum_probs=248.6
Q ss_pred CCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCc-eeeecc---ceeeee-------cccccc----------cceee
Q 017664 15 EKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEY-FEITWA---SLRAVV-------EPSFAV----------RSVIN 72 (368)
Q Consensus 15 ~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~-~~~~~~---~~~~~~-------~~~~~~----------~~~~~ 72 (368)
+++||+||||||||++||..|+ +|++|+|||+++. +|+... .+.... ...+.. +....
T Consensus 2 ~~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~~~~GG~c~~~gciP~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (438)
T PRK07251 2 LTYDLIVIGFGKAGKTLAAKLASAGKKVALVEESKAMYGGTCINIGCIPTKTLLVAAEKNLSFEQVMATKNTVTSRLRGK 81 (438)
T ss_pred CccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCCcccceeeecCccccchHhhhhhhcCCCHHHHHHHHHHHHHHHHHH
Confidence 4699999999999999999998 5999999999864 454321 111000 000000 00000
Q ss_pred cccc--cCceeEEEeEEEEeeccEEEecC---CeEEEecEEEEecCCCCCCCCchH----HHHHHHHHHHHHHhcCCeEE
Q 017664 73 HGDY--LSNVKIVVSTAVSITDTEVVTAG---GQTFVYDYVVVATGHVESVPKSRT----ERLSQYEKDFEKVKSANSVL 143 (368)
Q Consensus 73 ~~~~--~~~~~~~~~~~~~~~~~~v~~~~---g~~~~~d~lvlAtG~~~~~p~~~~----~~~~~~~~~~~~~~~~~~v~ 143 (368)
..+. ..+++++...+.+++.+++...+ ...+.||+||||||++|..|++++ ..+.+..........+++++
T Consensus 82 ~~~~~~~~gV~~~~g~~~~~~~~~v~v~~~~~~~~~~~d~vViATGs~~~~p~i~G~~~~~~v~~~~~~~~~~~~~~~vv 161 (438)
T PRK07251 82 NYAMLAGSGVDLYDAEAHFVSNKVIEVQAGDEKIELTAETIVINTGAVSNVLPIPGLADSKHVYDSTGIQSLETLPERLG 161 (438)
T ss_pred HHHHHHhCCCEEEEEEEEEccCCEEEEeeCCCcEEEEcCEEEEeCCCCCCCCCCCCcCCCCcEEchHHHhcchhcCCeEE
Confidence 0011 13788899988888888776543 347999999999999976554332 22333333333334578999
Q ss_pred EEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHcCCcEEEecceeeecccCCCe-EEcCCCcE
Q 017664 144 IVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVTLNTISDGL-IETSSGET 222 (368)
Q Consensus 144 VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~-v~~~~g~~ 222 (368)
|||+|++|+|+|..+++ .+.+|+++++.+++++..++++...+.+.++++||++++++.+.+++.+++. +...++++
T Consensus 162 IIGgG~~g~e~A~~l~~--~g~~Vtli~~~~~~l~~~~~~~~~~~~~~l~~~GI~i~~~~~V~~i~~~~~~v~v~~~g~~ 239 (438)
T PRK07251 162 IIGGGNIGLEFAGLYNK--LGSKVTVLDAASTILPREEPSVAALAKQYMEEDGITFLLNAHTTEVKNDGDQVLVVTEDET 239 (438)
T ss_pred EECCCHHHHHHHHHHHH--cCCeEEEEecCCccCCCCCHHHHHHHHHHHHHcCCEEEcCCEEEEEEecCCEEEEEECCeE
Confidence 99999999999999984 5889999999999998888899999999999999999999999998765542 33345678
Q ss_pred EecCEEEEccCCCCCchhhhccccccccCCCCcEEeCCCeeecCCCCeEEecccCCCCccchHHHHHHHHHHHHHHHHHH
Q 017664 223 IDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITDIPEIKQGYLAQKHALVTAKNLKKL 302 (368)
Q Consensus 223 i~~d~vi~a~G~~p~~~~~~~~~l~~~~~~~g~i~vd~~~~~~~~~~ifa~GD~~~~~~~~~~~~a~~~g~~aa~~i~~~ 302 (368)
+++|.+|+|+|.+|+.+.+.....++..+++|++.||+++|| +.|||||+|||++.+. +.+.|..+|+.++.++...
T Consensus 240 i~~D~viva~G~~p~~~~l~l~~~~~~~~~~g~i~vd~~~~t-~~~~IyaiGD~~~~~~--~~~~a~~~~~~~~~~~~~~ 316 (438)
T PRK07251 240 YRFDALLYATGRKPNTEPLGLENTDIELTERGAIKVDDYCQT-SVPGVFAVGDVNGGPQ--FTYISLDDFRIVFGYLTGD 316 (438)
T ss_pred EEcCEEEEeeCCCCCcccCCchhcCcEECCCCcEEECCCccc-CCCCEEEeeecCCCcc--cHhHHHHHHHHHHHHHcCC
Confidence 999999999999999876554433445677899999999999 8999999999997543 7899999999999888731
Q ss_pred Hc--CCCC--CCccccccCCCeEEEeecCCcceeE--------ecCc-----cccCccceeeeccccchhHHHHHcCCCC
Q 017664 303 MM--GRNK--GTMATYKPGYPIALVSLGRREGVAH--------FPFL-----TISGRIPGWIKSRDLFVGKTRKQLGLKP 365 (368)
Q Consensus 303 l~--g~~~--~~~~~~~~~~~~~~~~~g~~~~~~~--------~~~~-----~~~~~~~~~~k~~~~~~~~~~~~lG~~~ 365 (368)
-. -... -+...| ..|+++.+|+.++++... +.+. ...+...+++|+ ++++++++|||+|+
T Consensus 317 ~~~~~~~~~~~p~~~~-~~p~ia~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~kl--i~d~~~~~ilG~~~ 393 (438)
T PRK07251 317 GSYTLEDRGNVPTTMF-ITPPLSQVGLTEKEAKEAGLPYAVKELLVAAMPRAHVNNDLRGAFKV--VVNTETKEILGATL 393 (438)
T ss_pred CCccccccCCCCEEEE-CCCceEeeeCCHHHHHhcCCCeEEEEEECCcchhhhhcCCCcEEEEE--EEECCCCEEEEEEE
Confidence 00 0000 001112 357899999887766532 1111 134455789999 99999999999986
Q ss_pred C
Q 017664 366 T 366 (368)
Q Consensus 366 ~ 366 (368)
.
T Consensus 394 ~ 394 (438)
T PRK07251 394 F 394 (438)
T ss_pred E
Confidence 3
No 21
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=100.00 E-value=3.5e-43 Score=336.00 Aligned_cols=341 Identities=26% Similarity=0.324 Sum_probs=249.6
Q ss_pred CCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeecccee------------------ee----ec---cccccc
Q 017664 15 EKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITWASLR------------------AV----VE---PSFAVR 68 (368)
Q Consensus 15 ~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~~~~~------------------~~----~~---~~~~~~ 68 (368)
+++|++||||||||++||.+|. .|.+|+|||+ +.+|+.+.... .. +. .....+
T Consensus 2 ~~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~-~~~GG~~~~~gc~psk~l~~~~~~~~~~~~~~~~gi~~~~~~~~~~ 80 (460)
T PRK06292 2 EKYDVIVIGAGPAGYVAARRAAKLGKKVALIEK-GPLGGTCLNVGCIPSKALIAAAEAFHEAKHAEEFGIHADGPKIDFK 80 (460)
T ss_pred CcccEEEECCCHHHHHHHHHHHHCCCeEEEEeC-CccccceeccceeeHHHHHHHHHHHHHHHHHHhcCCCcCCCccCHH
Confidence 5699999999999999999997 4999999999 45554432100 00 00 000000
Q ss_pred ceee------------c-c--cccCceeEEEeEEEEeeccEEEecCCeEEEecEEEEecCCC-CCCCCch---HHHHHHH
Q 017664 69 SVIN------------H-G--DYLSNVKIVVSTAVSITDTEVVTAGGQTFVYDYVVVATGHV-ESVPKSR---TERLSQY 129 (368)
Q Consensus 69 ~~~~------------~-~--~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~d~lvlAtG~~-~~~p~~~---~~~~~~~ 129 (368)
.+.. . . ....+++++.+.+..++++++.. ++.++.||+||+|||+. |.+|+.. ...+.+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~v~v-~~~~~~~d~lIiATGs~~p~ipg~~~~~~~~~~~~ 159 (460)
T PRK06292 81 KVMARVRRERDRFVGGVVEGLEKKPKIDKIKGTARFVDPNTVEV-NGERIEAKNIVIATGSRVPPIPGVWLILGDRLLTS 159 (460)
T ss_pred HHHHHHHHHHHHHhcchHHHHHhhCCCEEEEEEEEEccCCEEEE-CcEEEEeCEEEEeCCCCCCCCCCCcccCCCcEECc
Confidence 0000 0 0 01125778888888888887766 67789999999999999 8888753 2223333
Q ss_pred HHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHcCCcEEEecceeeecc
Q 017664 130 EKDFEKVKSANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVTLNT 209 (368)
Q Consensus 130 ~~~~~~~~~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~ 209 (368)
.........+++++|||+|++|+|+|..+.+ .+.+|+++++.+++++.+++++...+.+.++++ |++++++.+.+++
T Consensus 160 ~~~~~~~~~~k~v~VIGgG~~g~E~A~~l~~--~g~~Vtli~~~~~~l~~~d~~~~~~~~~~l~~~-I~i~~~~~v~~i~ 236 (460)
T PRK06292 160 DDAFELDKLPKSLAVIGGGVIGLELGQALSR--LGVKVTVFERGDRILPLEDPEVSKQAQKILSKE-FKIKLGAKVTSVE 236 (460)
T ss_pred hHHhCccccCCeEEEECCCHHHHHHHHHHHH--cCCcEEEEecCCCcCcchhHHHHHHHHHHHhhc-cEEEcCCEEEEEE
Confidence 3333223457999999999999999999885 588999999999999988999999999999999 9999999999987
Q ss_pred cCCC-eEE--c--CCCcEEecCEEEEccCCCCCchhhhccccccccCCCCcEEeCCCeeecCCCCeEEecccCCCCccch
Q 017664 210 ISDG-LIE--T--SSGETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITDIPEIKQ 284 (368)
Q Consensus 210 ~~~~-~v~--~--~~g~~i~~d~vi~a~G~~p~~~~~~~~~l~~~~~~~g~i~vd~~~~~~~~~~ifa~GD~~~~~~~~~ 284 (368)
.+++ .+. + .+++++++|.+++++|.+|+.+.+....+++.++++|++.||+++|| +.|||||+|||++.+. +
T Consensus 237 ~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~g~i~vd~~~~t-s~~~IyA~GD~~~~~~--~ 313 (460)
T PRK06292 237 KSGDEKVEELEKGGKTETIEADYVLVATGRRPNTDGLGLENTGIELDERGRPVVDEHTQT-SVPGIYAAGDVNGKPP--L 313 (460)
T ss_pred EcCCceEEEEEcCCceEEEEeCEEEEccCCccCCCCCCcHhhCCEecCCCcEeECCCccc-CCCCEEEEEecCCCcc--c
Confidence 6543 343 2 23357999999999999999886544444456788899999999999 8999999999997643 7
Q ss_pred HHHHHHHHHHHHHHHHHH-HcCCCCCC--ccccccCCCeEEEeecCCcceeE--------ecCc-----cccCccceeee
Q 017664 285 GYLAQKHALVTAKNLKKL-MMGRNKGT--MATYKPGYPIALVSLGRREGVAH--------FPFL-----TISGRIPGWIK 348 (368)
Q Consensus 285 ~~~a~~~g~~aa~~i~~~-l~g~~~~~--~~~~~~~~~~~~~~~g~~~~~~~--------~~~~-----~~~~~~~~~~k 348 (368)
++.|.+||+.||.||... ........ ...| ..|+++.+|+++++|... +++. .+.+...+++|
T Consensus 314 ~~~A~~qg~~aa~~i~~~~~~~~~~~~~p~~~~-~~~~~a~vG~te~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~k 392 (460)
T PRK06292 314 LHEAADEGRIAAENAAGDVAGGVRYHPIPSVVF-TDPQIASVGLTEEELKAAGIDYVVGEVPFEAQGRARVMGKNDGFVK 392 (460)
T ss_pred hhHHHHHHHHHHHHhcCCCCCCcCCCCCCeEEE-CCCccEEeECCHHHHHhcCCCeEEEEEecccchHHHhcCCCCeEEE
Confidence 899999999999999742 10100011 1112 257889999988776432 1221 13455688999
Q ss_pred ccccchhHHHHHcCCCCC
Q 017664 349 SRDLFVGKTRKQLGLKPT 366 (368)
Q Consensus 349 ~~~~~~~~~~~~lG~~~~ 366 (368)
+ ++++++++|||+|+.
T Consensus 393 l--v~d~~~~~ilG~~~v 408 (460)
T PRK06292 393 V--YADKKTGRLLGAHII 408 (460)
T ss_pred E--EEECCCCEEEEEEEE
Confidence 9 999999999999863
No 22
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=100.00 E-value=2.6e-42 Score=320.63 Aligned_cols=327 Identities=25% Similarity=0.381 Sum_probs=248.5
Q ss_pred cEEEECCChHHHHHHHHhh----cCCcEEEEcCCCceeeeccceeeeeccccc-ccceeeccccc--CceeEEEeEEEEe
Q 017664 18 KVVVIGGGVGGSLLAYHIQ----SFADVVLIDEKEYFEITWASLRAVVEPSFA-VRSVINHGDYL--SNVKIVVSTAVSI 90 (368)
Q Consensus 18 ~vvIIGaG~aGl~aA~~L~----~g~~v~lie~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~ 90 (368)
+|||||||+||+.+|.+|+ ++.+|+|||+++.+.+... +......... .+...+..+++ .+++++.+.+..+
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~gv~~~~~~v~~i 79 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTPYSGM-LPGMIAGHYSLDEIRIDLRRLARQAGARFVIAEATGI 79 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCCcccch-hhHHHheeCCHHHhcccHHHHHHhcCCEEEEEEEEEE
Confidence 5899999999999999985 3789999999998665432 2221111111 12222333332 2788999999999
Q ss_pred ec--cEEEecCCeEEEecEEEEecCCCCCCCCchH--------HHHHHHHH----HHHHH---hcCCeEEEEcCchhHHH
Q 017664 91 TD--TEVVTAGGQTFVYDYVVVATGHVESVPKSRT--------ERLSQYEK----DFEKV---KSANSVLIVGGGPTGVE 153 (368)
Q Consensus 91 ~~--~~v~~~~g~~~~~d~lvlAtG~~~~~p~~~~--------~~~~~~~~----~~~~~---~~~~~v~VvG~g~~~~e 153 (368)
|+ +.|.+.++++++||+||||||+.|..|++++ ..+.++.. ..+.. ...++++|+|+|++|+|
T Consensus 80 d~~~~~V~~~~g~~~~yD~LviAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~E 159 (364)
T TIGR03169 80 DPDRRKVLLANRPPLSYDVLSLDVGSTTPLSGVEGAADLAVPVKPIENFLARWEALLESADAPPGTKRLAVVGGGAAGVE 159 (364)
T ss_pred ecccCEEEECCCCcccccEEEEccCCCCCCCCCCcccccccccCCHHHHHHHHHHHHHHHhcCCCCceEEEECCCHHHHH
Confidence 85 4788888888999999999999976655432 11122222 22222 23579999999999999
Q ss_pred HHHHHhhhCC----CCeEEEEecCcccccccCchhHHHHHHHHHcCCcEEEecceeeecccCCCeEEcCCCcEEecCEEE
Q 017664 154 LAGEIAVDFP----DKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVTLNTISDGLIETSSGETIDTDCHF 229 (368)
Q Consensus 154 ~a~~l~~~~~----~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~v~~~~g~~i~~d~vi 229 (368)
+|..|.+.++ ..+|+++ ..+.+++.+++.+...+.+.+++.||++++++.+.+++. +.+.+.+|+++++|.+|
T Consensus 160 ~A~~l~~~~~~~g~~~~V~li-~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~--~~v~~~~g~~i~~D~vi 236 (364)
T TIGR03169 160 IALALRRRLPKRGLRGQVTLI-AGASLLPGFPAKVRRLVLRLLARRGIEVHEGAPVTRGPD--GALILADGRTLPADAIL 236 (364)
T ss_pred HHHHHHHHHHhcCCCceEEEE-eCCcccccCCHHHHHHHHHHHHHCCCEEEeCCeeEEEcC--CeEEeCCCCEEecCEEE
Confidence 9999975322 2589999 566777778888899999999999999999999987753 37888889999999999
Q ss_pred EccCCCCCchhhhccccccccCCCCcEEeCCCeeecCCCCeEEecccCCC---CccchHHHHHHHHHHHHHHHHHHHcCC
Q 017664 230 MCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITDI---PEIKQGYLAQKHALVTAKNLKKLMMGR 306 (368)
Q Consensus 230 ~a~G~~p~~~~~~~~~l~~~~~~~g~i~vd~~~~~~~~~~ifa~GD~~~~---~~~~~~~~a~~~g~~aa~~i~~~l~g~ 306 (368)
+++|.+|+. ++...++ ..+++|++.||+++|++++|||||+|||+.. +.++.+..|.+||+.+|+||.+.+.|+
T Consensus 237 ~a~G~~p~~-~l~~~gl--~~~~~g~i~vd~~l~~~~~~~Iya~GD~~~~~~~~~~~~~~~A~~~g~~~a~ni~~~l~g~ 313 (364)
T TIGR03169 237 WATGARAPP-WLAESGL--PLDEDGFLRVDPTLQSLSHPHVFAAGDCAVITDAPRPKAGVYAVRQAPILAANLRASLRGQ 313 (364)
T ss_pred EccCCChhh-HHHHcCC--CcCCCCeEEECCccccCCCCCEEEeeeeeecCCCCCCCchHHHHHhHHHHHHHHHHHhcCC
Confidence 999999874 5555554 5677899999999999889999999999964 345678899999999999999999887
Q ss_pred CCCCccccccC-CCeEEEeecCCcceeEecCccccCccceeeeccccchhH
Q 017664 307 NKGTMATYKPG-YPIALVSLGRREGVAHFPFLTISGRIPGWIKSRDLFVGK 356 (368)
Q Consensus 307 ~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~ 356 (368)
+ +.+|.|. ...+++++|...++.....+.+.|.+.+++|. .+++.
T Consensus 314 ~---~~~~~~~~~~~~~~~~G~~~~v~~~~~~~~~~~~~~~~k~--~~~~~ 359 (364)
T TIGR03169 314 P---LRPFRPQRDYLQLLNTGDRRAVASWGWIIGPGRWLWRLKD--WIDRR 359 (364)
T ss_pred C---CCCCcccccceeEEEcCCCcEEEeecceeecCccHHHHHH--HHhHH
Confidence 4 3467663 45788999999988877666788888888886 44443
No 23
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=6.4e-43 Score=333.29 Aligned_cols=342 Identities=20% Similarity=0.241 Sum_probs=242.4
Q ss_pred CCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeeccce---ee--------ee---c------------ccccc
Q 017664 15 EKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITWASL---RA--------VV---E------------PSFAV 67 (368)
Q Consensus 15 ~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~~~~---~~--------~~---~------------~~~~~ 67 (368)
+++||+||||||||++||.+++ +|.+|+|||+++.+|+..... .. .. . ..+..
T Consensus 2 ~~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~~~GG~c~~~gciPsK~l~~~~~~~~~~~~~~~~~~gi~~~~~~~~ 81 (466)
T PRK06115 2 ASYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTLGGTCLNVGCMPSKALLHASELYEAASGGEFAHLGIEVKPTLNL 81 (466)
T ss_pred CcccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCceeeeeccCcccccHHHHHHhHHHHHHhhhhhhhcCccccCccCH
Confidence 3589999999999999999997 599999999866666542110 00 00 0 00000
Q ss_pred cceee------------ccccc--CceeEEEeEEEEeeccEEE--ecCC--eEEEecEEEEecCCCCC-CCCchH--HHH
Q 017664 68 RSVIN------------HGDYL--SNVKIVVSTAVSITDTEVV--TAGG--QTFVYDYVVVATGHVES-VPKSRT--ERL 126 (368)
Q Consensus 68 ~~~~~------------~~~~~--~~~~~~~~~~~~~~~~~v~--~~~g--~~~~~d~lvlAtG~~~~-~p~~~~--~~~ 126 (368)
..... ...++ .+++++.+.....+++++. ..++ ..++||+||||||++|. +|+... ..+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~~~~v~v~~~~g~~~~~~~d~lVIATGs~p~~ipg~~~~~~~~ 161 (466)
T PRK06115 82 AQMMKQKDESVEALTKGVEFLFRKNKVDWIKGWGRLDGVGKVVVKAEDGSETQLEAKDIVIATGSEPTPLPGVTIDNQRI 161 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEEcCCCceEEEEeCEEEEeCCCCCCCCCCCCCCCCeE
Confidence 00000 00011 2578888887666666543 3455 36999999999999974 455421 112
Q ss_pred HHHHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHcCCcEEEecceee
Q 017664 127 SQYEKDFEKVKSANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVT 206 (368)
Q Consensus 127 ~~~~~~~~~~~~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~ 206 (368)
.+..........+++++|||+|++|+|+|..+.+ .+.+|+++++.+++++.+++++...+.+.|++.||++++++.+.
T Consensus 162 ~~~~~~~~~~~~~~~vvIIGgG~ig~E~A~~l~~--~G~~Vtlie~~~~il~~~d~~~~~~l~~~l~~~gV~i~~~~~V~ 239 (466)
T PRK06115 162 IDSTGALSLPEVPKHLVVIGAGVIGLELGSVWRR--LGAQVTVVEYLDRICPGTDTETAKTLQKALTKQGMKFKLGSKVT 239 (466)
T ss_pred ECHHHHhCCccCCCeEEEECCCHHHHHHHHHHHH--cCCeEEEEeCCCCCCCCCCHHHHHHHHHHHHhcCCEEEECcEEE
Confidence 2222222222357999999999999999998884 58899999999999999999999999999999999999999999
Q ss_pred ecccCCC--eEEcC-----CCcEEecCEEEEccCCCCCchhhhccccccccCCCCcEEeCCCeeecCCCCeEEecccCCC
Q 017664 207 LNTISDG--LIETS-----SGETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITDI 279 (368)
Q Consensus 207 ~i~~~~~--~v~~~-----~g~~i~~d~vi~a~G~~p~~~~~~~~~l~~~~~~~g~i~vd~~~~~~~~~~ifa~GD~~~~ 279 (368)
+++.+++ .+.+. +++++++|.+++++|++|+.+.+.....++..+++| +.||+++|| +.|+|||+|||++.
T Consensus 240 ~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~~~l~~~~~g~~~~~~G-~~vd~~~~T-s~~~IyA~GD~~~~ 317 (466)
T PRK06115 240 GATAGADGVSLTLEPAAGGAAETLQADYVLVAIGRRPYTQGLGLETVGLETDKRG-MLANDHHRT-SVPGVWVIGDVTSG 317 (466)
T ss_pred EEEEcCCeEEEEEEEcCCCceeEEEeCEEEEccCCccccccCCcccccceeCCCC-EEECCCeec-CCCCEEEeeecCCC
Confidence 9876543 33321 235799999999999999988654444444566666 678999998 89999999999986
Q ss_pred CccchHHHHHHHHHHHHHHHHHHHcCCC--CCCccccccCCCeEEEeecCCccee--------EecCc-----cccCccc
Q 017664 280 PEIKQGYLAQKHALVTAKNLKKLMMGRN--KGTMATYKPGYPIALVSLGRREGVA--------HFPFL-----TISGRIP 344 (368)
Q Consensus 280 ~~~~~~~~a~~~g~~aa~~i~~~l~g~~--~~~~~~~~~~~~~~~~~~g~~~~~~--------~~~~~-----~~~~~~~ 344 (368)
+. +++.|.+||+.+|+||+......+ .-+...| ..|+++.+|+.+++|.. .+++. .+.+...
T Consensus 318 ~~--la~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~~-t~p~ia~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~ 394 (466)
T PRK06115 318 PM--LAHKAEDEAVACIERIAGKAGEVNYGLIPGVIY-TRPEVATVGKTEEQLKAEGRAYKVGKFPFTANSRAKINHETE 394 (466)
T ss_pred cc--cHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEE-CCcccEEeeCCHHHHHHCCCCEEEEEEecccChhhHhcCCCc
Confidence 54 899999999999999973210000 0111122 25789999998876643 22222 1345567
Q ss_pred eeeeccccchhHHHHHcCCCC
Q 017664 345 GWIKSRDLFVGKTRKQLGLKP 365 (368)
Q Consensus 345 ~~~k~~~~~~~~~~~~lG~~~ 365 (368)
+++|+ ++++++++|||+|+
T Consensus 395 g~~kl--v~~~~~~~ilG~~~ 413 (466)
T PRK06115 395 GFAKI--LADARTDEVLGVHM 413 (466)
T ss_pred eEEEE--EEECCCCEEEEEEE
Confidence 89999 99999999999986
No 24
>PRK14727 putative mercuric reductase; Provisional
Probab=100.00 E-value=9.9e-43 Score=333.07 Aligned_cols=339 Identities=18% Similarity=0.224 Sum_probs=248.0
Q ss_pred CCCcEEEECCChHHHHHHHHhhc-CCcEEEEcCCCceeeecccee------------------ee----e---ccccccc
Q 017664 15 EKKKVVVIGGGVGGSLLAYHIQS-FADVVLIDEKEYFEITWASLR------------------AV----V---EPSFAVR 68 (368)
Q Consensus 15 ~~~~vvIIGaG~aGl~aA~~L~~-g~~v~lie~~~~~~~~~~~~~------------------~~----~---~~~~~~~ 68 (368)
.++|++||||||||+++|..|++ |.+|+|+|+++.+|+.|.... .. + .+.+...
T Consensus 15 ~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~~GG~c~n~GciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~ 94 (479)
T PRK14727 15 LQLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADVIGGCCVNVGCVPSKILIRAAQLAHQQRSNPFDGVEAVAPSIDRG 94 (479)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCcceeEeccccccccHHHHHHHHHHHHHhhccccCcccCCCccCHH
Confidence 46899999999999999999985 999999999877776542210 00 0 0011000
Q ss_pred ce--------ee-----ccccc---CceeEEEeEEEEeeccEE--EecCC--eEEEecEEEEecCCCCCCCCchHH---H
Q 017664 69 SV--------IN-----HGDYL---SNVKIVVSTAVSITDTEV--VTAGG--QTFVYDYVVVATGHVESVPKSRTE---R 125 (368)
Q Consensus 69 ~~--------~~-----~~~~~---~~~~~~~~~~~~~~~~~v--~~~~g--~~~~~d~lvlAtG~~~~~p~~~~~---~ 125 (368)
.+ .. +...+ .+++++++.+...+++++ .+.++ .+++||+||||||+.|..|++++. .
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~G~a~f~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~p~i~G~~~~~ 174 (479)
T PRK14727 95 LLLHQQQARVEELRHAKYQSILDGNPALTLLKGYARFKDGNTLVVRLHDGGERVLAADRCLIATGSTPTIPPIPGLMDTP 174 (479)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHhhcCCeEEEEEEEEEecCCEEEEEeCCCceEEEEeCEEEEecCCCCCCCCCCCcCccc
Confidence 00 00 11111 267888999888888754 34455 369999999999999877765431 1
Q ss_pred HHHHHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHcCCcEEEeccee
Q 017664 126 LSQYEKDFEKVKSANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSV 205 (368)
Q Consensus 126 ~~~~~~~~~~~~~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v 205 (368)
..+..........+++++|||+|++|+|+|..+.+ .+.+|+++++. ++++.+++++...+.+.+++.||++++++.+
T Consensus 175 ~~~~~~~l~~~~~~k~vvVIGgG~iG~E~A~~l~~--~G~~Vtlv~~~-~~l~~~d~~~~~~l~~~L~~~GV~i~~~~~V 251 (479)
T PRK14727 175 YWTSTEALFSDELPASLTVIGSSVVAAEIAQAYAR--LGSRVTILARS-TLLFREDPLLGETLTACFEKEGIEVLNNTQA 251 (479)
T ss_pred eecchHHhccccCCCeEEEECCCHHHHHHHHHHHH--cCCEEEEEEcC-CCCCcchHHHHHHHHHHHHhCCCEEEcCcEE
Confidence 11111211222346899999999999999999984 58899999875 6777888899999999999999999999999
Q ss_pred eecccCCC--eEEcCCCcEEecCEEEEccCCCCCchhhhccccccccCCCCcEEeCCCeeecCCCCeEEecccCCCCccc
Q 017664 206 TLNTISDG--LIETSSGETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITDIPEIK 283 (368)
Q Consensus 206 ~~i~~~~~--~v~~~~g~~i~~d~vi~a~G~~p~~~~~~~~~l~~~~~~~g~i~vd~~~~~~~~~~ifa~GD~~~~~~~~ 283 (368)
..++.+++ .+.+.++ ++++|.+|+++|+.|+.+++....+++.++++|++.||+++|| +.|||||+|||++.+.
T Consensus 252 ~~i~~~~~~~~v~~~~g-~i~aD~VlvA~G~~pn~~~l~l~~~g~~~~~~G~i~Vd~~~~T-s~~~IyA~GD~~~~~~-- 327 (479)
T PRK14727 252 SLVEHDDNGFVLTTGHG-ELRAEKLLISTGRHANTHDLNLEAVGVTTDTSGAIVVNPAMET-SAPDIYAAGDCSDLPQ-- 327 (479)
T ss_pred EEEEEeCCEEEEEEcCC-eEEeCEEEEccCCCCCccCCCchhhCceecCCCCEEECCCeec-CCCCEEEeeecCCcch--
Confidence 98876544 4455555 6999999999999999887654444557788899999999999 8999999999997654
Q ss_pred hHHHHHHHHHHHHHHHHHHHcCCCCC---Cc--cccccCCCeEEEeecCCccee--------EecCcc-----ccCccce
Q 017664 284 QGYLAQKHALVTAKNLKKLMMGRNKG---TM--ATYKPGYPIALVSLGRREGVA--------HFPFLT-----ISGRIPG 345 (368)
Q Consensus 284 ~~~~a~~~g~~aa~~i~~~l~g~~~~---~~--~~~~~~~~~~~~~~g~~~~~~--------~~~~~~-----~~~~~~~ 345 (368)
..+.|..||+.||.||. |.+.. .. ......|+++.+|+++++|.. .+++.. ..+...+
T Consensus 328 ~~~~A~~~G~~aa~~i~----g~~~~~~~~~~p~~~~~~p~ia~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g 403 (479)
T PRK14727 328 FVYVAAAAGSRAGINMT----GGNATLDLSAMPAVIFTDPQVATVGLSEAKAHLSGIETISRVLTMENVPRALANFETDG 403 (479)
T ss_pred hhhHHHHHHHHHHHHHc----CCCcccccccCCcEEEecCceeeeeCCHHHHHHcCCceEEEEEEcccCchhhhcCCCCe
Confidence 67899999999999997 32211 00 111135889999998877742 222221 1234578
Q ss_pred eeeccccchhHHHHHcCCCCC
Q 017664 346 WIKSRDLFVGKTRKQLGLKPT 366 (368)
Q Consensus 346 ~~k~~~~~~~~~~~~lG~~~~ 366 (368)
++|+ ++++++++|||+|+.
T Consensus 404 ~~Kl--i~d~~~~~ilG~~~~ 422 (479)
T PRK14727 404 FIKL--VAEEGTRKLIGAQIL 422 (479)
T ss_pred EEEE--EEECCCCEEEEEEEE
Confidence 9999 999999999999863
No 25
>PRK14694 putative mercuric reductase; Provisional
Probab=100.00 E-value=1.3e-42 Score=331.83 Aligned_cols=337 Identities=19% Similarity=0.267 Sum_probs=244.7
Q ss_pred CCCCcEEEECCChHHHHHHHHhhc-CCcEEEEcCCCceeeecccee------------------e-----eec---cccc
Q 017664 14 VEKKKVVVIGGGVGGSLLAYHIQS-FADVVLIDEKEYFEITWASLR------------------A-----VVE---PSFA 66 (368)
Q Consensus 14 ~~~~~vvIIGaG~aGl~aA~~L~~-g~~v~lie~~~~~~~~~~~~~------------------~-----~~~---~~~~ 66 (368)
..++||+||||||||++||.+|++ |.+|+|||++. +|+.|.... . .+. +.+.
T Consensus 4 ~~~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~~-~GGtc~n~GciPsk~l~~~a~~~~~~~~~~~~~g~~~~~~~~~ 82 (468)
T PRK14694 4 DNNLHIAVIGSGGSAMAAALKATERGARVTLIERGT-IGGTCVNIGCVPSKIMIRAAHIAHLRRESPFDDGLSAQAPVVD 82 (468)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEEccc-cccceecCCccccHHHHHHHHHHHHHhhccccCCcccCCCccC
Confidence 457999999999999999999985 99999999874 444321100 0 000 0000
Q ss_pred cccee--------e-----ccc---ccCceeEEEeEEEEeecc--EEEecCC--eEEEecEEEEecCCCCCCCCchH---
Q 017664 67 VRSVI--------N-----HGD---YLSNVKIVVSTAVSITDT--EVVTAGG--QTFVYDYVVVATGHVESVPKSRT--- 123 (368)
Q Consensus 67 ~~~~~--------~-----~~~---~~~~~~~~~~~~~~~~~~--~v~~~~g--~~~~~d~lvlAtG~~~~~p~~~~--- 123 (368)
...+. . ... ...+++++.+++..++++ .|.+.++ .+++||+||||||++|..|++++
T Consensus 83 ~~~l~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~g~v~~id~~~~~V~~~~g~~~~~~~d~lViATGs~p~~p~i~G~~~ 162 (468)
T PRK14694 83 RSALLAQQQARVEELRESKYQSILRENAAITVLNGEARFVDERTLTVTLNDGGEQTVHFDRAFIGTGARPAEPPVPGLAE 162 (468)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHhcCCCeEEEEEEEEEecCCEEEEEecCCCeEEEECCEEEEeCCCCCCCCCCCCCCC
Confidence 00000 0 001 112688999999999876 4555565 47999999999999977665442
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHcCCcEEEecc
Q 017664 124 ERLSQYEKDFEKVKSANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQ 203 (368)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~ 203 (368)
..+.+..........+++++|||+|++|+|+|..|.+ .+.+|+++++ +++++..++++...+.+.+++.||++++++
T Consensus 163 ~~~~~~~~~~~l~~~~~~vvViG~G~~G~E~A~~l~~--~g~~Vtlv~~-~~~l~~~~~~~~~~l~~~l~~~GI~v~~~~ 239 (468)
T PRK14694 163 TPYLTSTSALELDHIPERLLVIGASVVALELAQAFAR--LGSRVTVLAR-SRVLSQEDPAVGEAIEAAFRREGIEVLKQT 239 (468)
T ss_pred CceEcchhhhchhcCCCeEEEECCCHHHHHHHHHHHH--cCCeEEEEEC-CCCCCCCCHHHHHHHHHHHHhCCCEEEeCC
Confidence 1122222222222347899999999999999999885 5889999987 467777888999999999999999999999
Q ss_pred eeeecccCCC--eEEcCCCcEEecCEEEEccCCCCCchhhhccccccccCCCCcEEeCCCeeecCCCCeEEecccCCCCc
Q 017664 204 SVTLNTISDG--LIETSSGETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITDIPE 281 (368)
Q Consensus 204 ~v~~i~~~~~--~v~~~~g~~i~~d~vi~a~G~~p~~~~~~~~~l~~~~~~~g~i~vd~~~~~~~~~~ifa~GD~~~~~~ 281 (368)
.+.+++.+++ .+.++++ ++++|.+|+++|.+|+.+++....+++.. .+|++.||+++|| +.|||||+|||++.+.
T Consensus 240 ~v~~i~~~~~~~~v~~~~~-~i~~D~vi~a~G~~pn~~~l~l~~~g~~~-~~G~i~vd~~~~T-s~~~IyA~GD~~~~~~ 316 (468)
T PRK14694 240 QASEVDYNGREFILETNAG-TLRAEQLLVATGRTPNTENLNLESIGVET-ERGAIRIDEHLQT-TVSGIYAAGDCTDQPQ 316 (468)
T ss_pred EEEEEEEcCCEEEEEECCC-EEEeCEEEEccCCCCCcCCCCchhcCccc-CCCeEeeCCCccc-CCCCEEEEeecCCCcc
Confidence 9998876655 3444444 69999999999999999876544444454 5789999999999 8999999999997654
Q ss_pred cchHHHHHHHHHHHHHHHHHHHcCCCCC------CccccccCCCeEEEeecCCcceeE--------ecCcc----c-cCc
Q 017664 282 IKQGYLAQKHALVTAKNLKKLMMGRNKG------TMATYKPGYPIALVSLGRREGVAH--------FPFLT----I-SGR 342 (368)
Q Consensus 282 ~~~~~~a~~~g~~aa~~i~~~l~g~~~~------~~~~~~~~~~~~~~~~g~~~~~~~--------~~~~~----~-~~~ 342 (368)
..+.|..||+.||.||. |.+.. +...| ..|+++.+|+++++|... +++.. + .+.
T Consensus 317 --~~~~A~~~G~~aa~~i~----~~~~~~~~~~~p~~~~-~~p~~a~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~ 389 (468)
T PRK14694 317 --FVYVAAAGGSRAAINMT----GGDASLDLSAMPEVIF-TDPQVATVGLSEAEAQAQGYDTDSRTLDLENVPRALVNFD 389 (468)
T ss_pred --cHHHHHHHHHHHHHHhc----CCCcccccCCCCeEEE-CCCCeEEeeCCHHHHHHcCCceEEEEEecccchhhhhcCC
Confidence 67899999999999997 33211 11122 257899999988776532 22221 1 334
Q ss_pred cceeeeccccchhHHHHHcCCCCC
Q 017664 343 IPGWIKSRDLFVGKTRKQLGLKPT 366 (368)
Q Consensus 343 ~~~~~k~~~~~~~~~~~~lG~~~~ 366 (368)
..+++|+ ++++++++|||+|+.
T Consensus 390 ~~g~~kl--v~~~~~~~ilG~~~~ 411 (468)
T PRK14694 390 TGGFIKM--VAERGSGRLLGVQVV 411 (468)
T ss_pred CceEEEE--EEECCCCEEEEEEEE
Confidence 5789999 999999999999863
No 26
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=100.00 E-value=5.1e-42 Score=326.82 Aligned_cols=337 Identities=20% Similarity=0.257 Sum_probs=243.5
Q ss_pred cEEEECCChHHHHHHHHhhc---CCcEEEEcCCCceeeeccceeeeecccccc--cceeeccccc--CceeEE-EeEEEE
Q 017664 18 KVVVIGGGVGGSLLAYHIQS---FADVVLIDEKEYFEITWASLRAVVEPSFAV--RSVINHGDYL--SNVKIV-VSTAVS 89 (368)
Q Consensus 18 ~vvIIGaG~aGl~aA~~L~~---g~~v~lie~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~--~~~~~~-~~~~~~ 89 (368)
+|||||||+||+++|..|++ +.+|+|||+++.+++....+.......+.. .......+.+ .+++++ ...+..
T Consensus 2 ~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~~ 81 (444)
T PRK09564 2 KIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVSFGACGLPYFVGGFFDDPNTMIARTPEEFIKSGIDVKTEHEVVK 81 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcceeecCCCceEeccccCCHHHhhcCCHHHHHHCCCeEEecCEEEE
Confidence 79999999999999999874 569999999998876544443333221111 1111111111 267765 457777
Q ss_pred eec--cEEEecC---CeEEE--ecEEEEecCCCCCCCCchH---HH------HHHHHHHHHHH--hcCCeEEEEcCchhH
Q 017664 90 ITD--TEVVTAG---GQTFV--YDYVVVATGHVESVPKSRT---ER------LSQYEKDFEKV--KSANSVLIVGGGPTG 151 (368)
Q Consensus 90 ~~~--~~v~~~~---g~~~~--~d~lvlAtG~~~~~p~~~~---~~------~~~~~~~~~~~--~~~~~v~VvG~g~~~ 151 (368)
+++ +.+.+.+ +..+. ||+||+|||++|..|++++ ++ +.+.....+.+ ..+++++|+|+|++|
T Consensus 82 id~~~~~v~~~~~~~~~~~~~~yd~lviAtG~~~~~~~i~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVvGgG~~g 161 (444)
T PRK09564 82 VDAKNKTITVKNLKTGSIFNDTYDKLMIATGARPIIPPIKNINLENVYTLKSMEDGLALKELLKDEEIKNIVIIGAGFIG 161 (444)
T ss_pred EECCCCEEEEEECCCCCEEEecCCEEEECCCCCCCCCCCCCcCCCCEEEECCHHHHHHHHHHHhhcCCCEEEEECCCHHH
Confidence 764 4565543 55666 9999999999976554321 11 22222222222 246899999999999
Q ss_pred HHHHHHHhhhCCCCeEEEEecCccccc-ccCchhHHHHHHHHHcCCcEEEecceeeecccCCC--eEEcCCCcEEecCEE
Q 017664 152 VELAGEIAVDFPDKKVILVHRGPKLLE-FVGSRASQIALDWLTSKKVEVILNQSVTLNTISDG--LIETSSGETIDTDCH 228 (368)
Q Consensus 152 ~e~a~~l~~~~~~~~v~~i~~~~~~l~-~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~--~v~~~~g~~i~~d~v 228 (368)
+|+|..+.+ .+.+|+++++.+++++ .+++++.+.+.+.+++.||++++++++.+++.++. .+.+++ .++++|.+
T Consensus 162 ~e~A~~l~~--~g~~Vtli~~~~~~l~~~~~~~~~~~l~~~l~~~gI~v~~~~~v~~i~~~~~~~~v~~~~-~~i~~d~v 238 (444)
T PRK09564 162 LEAVEAAKH--LGKNVRIIQLEDRILPDSFDKEITDVMEEELRENGVELHLNEFVKSLIGEDKVEGVVTDK-GEYEADVV 238 (444)
T ss_pred HHHHHHHHh--cCCcEEEEeCCcccCchhcCHHHHHHHHHHHHHCCCEEEcCCEEEEEecCCcEEEEEeCC-CEEEcCEE
Confidence 999999874 5889999999988776 57889999999999999999999999998865443 344444 47999999
Q ss_pred EEccCCCCCchhhhccccccccCCCCcEEeCCCeeecCCCCeEEecccCCCCc--------cchHHHHHHHHHHHHHHHH
Q 017664 229 FMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITDIPE--------IKQGYLAQKHALVTAKNLK 300 (368)
Q Consensus 229 i~a~G~~p~~~~~~~~~l~~~~~~~g~i~vd~~~~~~~~~~ifa~GD~~~~~~--------~~~~~~a~~~g~~aa~~i~ 300 (368)
++|+|..|+.+++...++ .++++|++.||+++|| +.|||||+|||+..+. +++++.|.+||+.+|+||.
T Consensus 239 i~a~G~~p~~~~l~~~gl--~~~~~g~i~vd~~~~t-~~~~IyA~GD~~~~~~~~~~~~~~~~~~~~A~~qg~~~a~ni~ 315 (444)
T PRK09564 239 IVATGVKPNTEFLEDTGL--KTLKNGAIIVDEYGET-SIENIYAAGDCATIYNIVSNKNVYVPLATTANKLGRMVGENLA 315 (444)
T ss_pred EECcCCCcCHHHHHhcCc--cccCCCCEEECCCccc-CCCCEEEeeeEEEEEeccCCCeeeccchHHHHHHHHHHHHHhc
Confidence 999999999999887766 5677899999999998 8999999999997531 3578899999999999997
Q ss_pred HHHcCCCCCC---cccc---ccCCCeEEEeecCCcceeE--------ecCc----cccCccceeeeccccchhHHHHHcC
Q 017664 301 KLMMGRNKGT---MATY---KPGYPIALVSLGRREGVAH--------FPFL----TISGRIPGWIKSRDLFVGKTRKQLG 362 (368)
Q Consensus 301 ~~l~g~~~~~---~~~~---~~~~~~~~~~~g~~~~~~~--------~~~~----~~~~~~~~~~k~~~~~~~~~~~~lG 362 (368)
|.+... ...+ ...++++.+|+.++++... +... ...+...+++|+ ++++++++|||
T Consensus 316 ----g~~~~~~~~~~~~~~~~~~~~~a~vG~t~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~kl--v~~~~~~~ilG 389 (444)
T PRK09564 316 ----GRHVSFKGTLGSACIKVLDLEAARTGLTEEEAKKLGIDYKTVFIKDKNHTNYYPGQEDLYVKL--IYEADTKVILG 389 (444)
T ss_pred ----CCCCCCCCcccceEEEECCEEEEEecCCHHHHHHCCCCeEEEEEecCCCCCcCCCCceEEEEE--EEECCCCeEEe
Confidence 432211 0010 1246788888887766321 1111 124555789998 99999999999
Q ss_pred CCCC
Q 017664 363 LKPT 366 (368)
Q Consensus 363 ~~~~ 366 (368)
+|+.
T Consensus 390 ~~~~ 393 (444)
T PRK09564 390 GQII 393 (444)
T ss_pred EEEE
Confidence 9863
No 27
>PTZ00058 glutathione reductase; Provisional
Probab=100.00 E-value=1.6e-42 Score=332.96 Aligned_cols=342 Identities=20% Similarity=0.270 Sum_probs=246.5
Q ss_pred CCCcEEEECCChHHHHHHHHhhc-CCcEEEEcCCCceeeec---cceee-------------------eec--ccccccc
Q 017664 15 EKKKVVVIGGGVGGSLLAYHIQS-FADVVLIDEKEYFEITW---ASLRA-------------------VVE--PSFAVRS 69 (368)
Q Consensus 15 ~~~~vvIIGaG~aGl~aA~~L~~-g~~v~lie~~~~~~~~~---~~~~~-------------------~~~--~~~~~~~ 69 (368)
.++|++||||||||++||..+++ |.+|+|||++. +|+.. +.+.. .+. ..+....
T Consensus 47 ~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~~-~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~Gi~~~~~~d~~~ 125 (561)
T PTZ00058 47 MVYDLIVIGGGSGGMAAARRAARNKAKVALVEKDY-LGGTCVNVGCVPKKIMFNAASIHDILENSRHYGFDTQFSFNLPL 125 (561)
T ss_pred ccccEEEECcCHHHHHHHHHHHHcCCeEEEEeccc-ccccccccCCCCCchhhhhcccHHHHHHHHhcCCCccCccCHHH
Confidence 46899999999999999999985 99999999874 44321 11100 000 0000000
Q ss_pred eee------------ccccc--CceeEEEeEEEEeeccEEE----------------------------ecCCeEEEecE
Q 017664 70 VIN------------HGDYL--SNVKIVVSTAVSITDTEVV----------------------------TAGGQTFVYDY 107 (368)
Q Consensus 70 ~~~------------~~~~~--~~~~~~~~~~~~~~~~~v~----------------------------~~~g~~~~~d~ 107 (368)
+.. ..+.+ .+++++.+.....++++|. ..++..++||+
T Consensus 126 ~~~~~~~~~~~~~~~~~~~l~~~gv~~~~G~a~f~~~~~v~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~i~ad~ 205 (561)
T PTZ00058 126 LVERRDKYIRRLNDIYRQNLKKDNVEYFEGKGSLLSENQVLIKKVSQVDGEADESDDDEVTIVSAGVSQLDDGQVIEGKN 205 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEecCCEEEeeccccccccccccccccceeeeccceecCCCcEEECCE
Confidence 000 00111 2678899998888877653 23567899999
Q ss_pred EEEecCCCCCCCCchHHH-HHHHHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccccCchhHH
Q 017664 108 VVVATGHVESVPKSRTER-LSQYEKDFEKVKSANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQ 186 (368)
Q Consensus 108 lvlAtG~~~~~p~~~~~~-~~~~~~~~~~~~~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~ 186 (368)
||||||+.|..|++++.. ..+...... +..+++++|||+|++|+|+|..+.+ .+.+|+++++++++++.+++++.+
T Consensus 206 lVIATGS~P~~P~IpG~~~v~ts~~~~~-l~~pk~VvIIGgG~iGlE~A~~l~~--~G~~Vtli~~~~~il~~~d~~i~~ 282 (561)
T PTZ00058 206 ILIAVGNKPIFPDVKGKEFTISSDDFFK-IKEAKRIGIAGSGYIAVELINVVNR--LGAESYIFARGNRLLRKFDETIIN 282 (561)
T ss_pred EEEecCCCCCCCCCCCceeEEEHHHHhh-ccCCCEEEEECCcHHHHHHHHHHHH--cCCcEEEEEecccccccCCHHHHH
Confidence 999999998877765321 222222222 2238999999999999999999884 589999999999999999999999
Q ss_pred HHHHHHHcCCcEEEecceeeecccCCC---eEEcCC-CcEEecCEEEEccCCCCCchhhhccccccccCCCCcEEeCCCe
Q 017664 187 IALDWLTSKKVEVILNQSVTLNTISDG---LIETSS-GETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENL 262 (368)
Q Consensus 187 ~~~~~l~~~gv~i~~~~~v~~i~~~~~---~v~~~~-g~~i~~d~vi~a~G~~p~~~~~~~~~l~~~~~~~g~i~vd~~~ 262 (368)
.+.+.+++.||++++++.+.+++.+++ .+...+ ++++++|.+++++|++|+.+++...+++.. +++|+|.||+++
T Consensus 283 ~l~~~L~~~GV~i~~~~~V~~I~~~~~~~v~v~~~~~~~~i~aD~VlvA~Gr~Pn~~~L~l~~~~~~-~~~G~I~VDe~l 361 (561)
T PTZ00058 283 ELENDMKKNNINIITHANVEEIEKVKEKNLTIYLSDGRKYEHFDYVIYCVGRSPNTEDLNLKALNIK-TPKGYIKVDDNQ 361 (561)
T ss_pred HHHHHHHHCCCEEEeCCEEEEEEecCCCcEEEEECCCCEEEECCEEEECcCCCCCccccCcccccee-cCCCeEEECcCC
Confidence 999999999999999999998876532 333333 457999999999999999988876655433 467999999999
Q ss_pred eecCCCCeEEecccCCCC--------------------------------ccchHHHHHHHHHHHHHHHHHHHcCCC-CC
Q 017664 263 RVRGFKNVFAIGDITDIP--------------------------------EIKQGYLAQKHALVTAKNLKKLMMGRN-KG 309 (368)
Q Consensus 263 ~~~~~~~ifa~GD~~~~~--------------------------------~~~~~~~a~~~g~~aa~~i~~~l~g~~-~~ 309 (368)
|| +.|||||+|||++.+ .+.+++.|.+||+++|+||........ ..
T Consensus 362 qT-s~p~IYA~GDv~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~la~~A~~~g~~aa~ni~g~~~~~~~~~ 440 (561)
T PTZ00058 362 RT-SVKHIYAVGDCCMVKKNQEIEDLNLLKLYNEEPYLKKKENTSGESYYNVQLTPVAINAGRLLADRLFGPFSRTTNYK 440 (561)
T ss_pred cc-CCCCEEEeEeccCccccccccccccccccccccccccccccccccccCcCchHHHHHHHHHHHHHHhCCCCcccCCC
Confidence 98 899999999999832 245789999999999999973100000 00
Q ss_pred --CccccccCCCeEEEeecCCcceeEe----------cCcc-----c----cCccceeeeccccchhHHHHHcCCCC
Q 017664 310 --TMATYKPGYPIALVSLGRREGVAHF----------PFLT-----I----SGRIPGWIKSRDLFVGKTRKQLGLKP 365 (368)
Q Consensus 310 --~~~~~~~~~~~~~~~~g~~~~~~~~----------~~~~-----~----~~~~~~~~k~~~~~~~~~~~~lG~~~ 365 (368)
+...| ..|+++.+|+++.+|.... .+.. . .+...+++|+ ++++++++|||+|+
T Consensus 441 ~ip~~vf-t~peiA~vGlte~eA~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kl--i~~~~t~~ILG~~i 514 (561)
T PTZ00058 441 LIPSVIF-SHPPIGTIGLSEQEAIDIYGKENVKIYESRFTNLFFSVYDMDPAQKEKTYLKL--VCVGKEELIKGLHI 514 (561)
T ss_pred CCCeEEe-CCchheeeeCCHHHHHHhcCCCcEEEEEeecchhhhhhhcccccCCCCeEEEE--EEECCCCEEEEEEE
Confidence 01122 2478999999887776321 1110 0 1234689998 99999999999986
No 28
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=100.00 E-value=9.6e-43 Score=332.06 Aligned_cols=339 Identities=20% Similarity=0.256 Sum_probs=246.6
Q ss_pred CCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeec---cceee-------------------eec------cccc
Q 017664 16 KKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITW---ASLRA-------------------VVE------PSFA 66 (368)
Q Consensus 16 ~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~---~~~~~-------------------~~~------~~~~ 66 (368)
++|++||||||+|+.+|..++ +|.+|+|||++. +|+.. ..+.. .+. ..+.
T Consensus 1 ~~~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~~-~gG~c~~~gciPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~ 79 (466)
T PRK07845 1 MTRIVIIGGGPGGYEAALVAAQLGADVTVIERDG-LGGAAVLTDCVPSKTLIATAEVRTELRRAAELGIRFIDDGEARVD 79 (466)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccC-CCCcccccCCcchHHHHHHHHHHHHHHHHHhCCcccccCcccccC
Confidence 358999999999999999997 499999999876 44321 11000 000 0000
Q ss_pred cccee------------eccccc--CceeEEEeEEEE----eeccEE--EecCCe--EEEecEEEEecCCCCCCCCch--
Q 017664 67 VRSVI------------NHGDYL--SNVKIVVSTAVS----ITDTEV--VTAGGQ--TFVYDYVVVATGHVESVPKSR-- 122 (368)
Q Consensus 67 ~~~~~------------~~~~~~--~~~~~~~~~~~~----~~~~~v--~~~~g~--~~~~d~lvlAtG~~~~~p~~~-- 122 (368)
...+. ...+.+ .+++++.+++.. ++++++ .+.+|. .+.||+||||||+.|..|+..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g~~~~~~~~~~~~~v~V~~~~g~~~~~~~d~lViATGs~p~~~p~~~~ 159 (466)
T PRK07845 80 LPAVNARVKALAAAQSADIRARLEREGVRVIAGRGRLIDPGLGPHRVKVTTADGGEETLDADVVLIATGASPRILPTAEP 159 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEeecccCCCEEEEEeCCCceEEEecCEEEEcCCCCCCCCCCCCC
Confidence 00000 000111 268999998888 556644 344564 699999999999998755421
Q ss_pred -HHHHHHHHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHcCCcEEEe
Q 017664 123 -TERLSQYEKDFEKVKSANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVIL 201 (368)
Q Consensus 123 -~~~~~~~~~~~~~~~~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~ 201 (368)
...+.+..........+++++|||+|++|+|+|..|.+ .+.+|+++++.+++++.+++++...+.+.|+++||++++
T Consensus 160 ~~~~v~~~~~~~~~~~~~~~vvVIGgG~ig~E~A~~l~~--~g~~Vtli~~~~~~l~~~d~~~~~~l~~~L~~~gV~i~~ 237 (466)
T PRK07845 160 DGERILTWRQLYDLDELPEHLIVVGSGVTGAEFASAYTE--LGVKVTLVSSRDRVLPGEDADAAEVLEEVFARRGMTVLK 237 (466)
T ss_pred CCceEEeehhhhcccccCCeEEEECCCHHHHHHHHHHHH--cCCeEEEEEcCCcCCCCCCHHHHHHHHHHHHHCCcEEEc
Confidence 12222333322222346899999999999999999884 589999999999999988999999999999999999999
Q ss_pred cceeeecccCCC--eEEcCCCcEEecCEEEEccCCCCCchhhhccccccccCCCCcEEeCCCeeecCCCCeEEecccCCC
Q 017664 202 NQSVTLNTISDG--LIETSSGETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITDI 279 (368)
Q Consensus 202 ~~~v~~i~~~~~--~v~~~~g~~i~~d~vi~a~G~~p~~~~~~~~~l~~~~~~~g~i~vd~~~~~~~~~~ifa~GD~~~~ 279 (368)
++.+.+++.+++ .+.+.+|+++++|.+++++|++|+.+.+....+++.++++|++.||+++|| +.|||||+|||++.
T Consensus 238 ~~~v~~v~~~~~~~~v~~~~g~~l~~D~vl~a~G~~pn~~~l~l~~~gl~~~~~G~i~Vd~~~~T-s~~~IyA~GD~~~~ 316 (466)
T PRK07845 238 RSRAESVERTGDGVVVTLTDGRTVEGSHALMAVGSVPNTAGLGLEEAGVELTPSGHITVDRVSRT-SVPGIYAAGDCTGV 316 (466)
T ss_pred CCEEEEEEEeCCEEEEEECCCcEEEecEEEEeecCCcCCCCCCchhhCceECCCCcEeECCCccc-CCCCEEEEeeccCC
Confidence 999998875544 566678889999999999999999886433334447788899999999998 89999999999976
Q ss_pred CccchHHHHHHHHHHHHHHHHHHHcCCCCCCc-ccccc-----CCCeEEEeecCCccee--------EecCc-----ccc
Q 017664 280 PEIKQGYLAQKHALVTAKNLKKLMMGRNKGTM-ATYKP-----GYPIALVSLGRREGVA--------HFPFL-----TIS 340 (368)
Q Consensus 280 ~~~~~~~~a~~~g~~aa~~i~~~l~g~~~~~~-~~~~~-----~~~~~~~~~g~~~~~~--------~~~~~-----~~~ 340 (368)
+ ++++.|.+||+.|+.||+ |.+..+. ....| .|+++.+|+++++|.. .+++. .+.
T Consensus 317 ~--~l~~~A~~~g~~aa~~i~----g~~~~~~~~~~~p~~vf~~p~~a~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~ 390 (466)
T PRK07845 317 L--PLASVAAMQGRIAMYHAL----GEAVSPLRLKTVASNVFTRPEIATVGVSQAAIDSGEVPARTVMLPLATNPRAKMS 390 (466)
T ss_pred c--cchhHHHHHHHHHHHHHc----CCCCCcCCCCCCCEEEeCCCcceeecCCHHHHHhCCCceEEEEEecccCchhhhc
Confidence 4 378999999999999997 3221111 11111 4788999998765542 11221 135
Q ss_pred CccceeeeccccchhHHHHHcCCCCC
Q 017664 341 GRIPGWIKSRDLFVGKTRKQLGLKPT 366 (368)
Q Consensus 341 ~~~~~~~k~~~~~~~~~~~~lG~~~~ 366 (368)
+...+++|+ ++++++++|||+|+.
T Consensus 391 ~~~~g~~kl--i~d~~~~~ilG~~~~ 414 (466)
T PRK07845 391 GLRDGFVKL--FCRPGTGVVIGGVVV 414 (466)
T ss_pred CCCceEEEE--EEECCCCEEEEEEEE
Confidence 566799999 999999999999863
No 29
>PRK13748 putative mercuric reductase; Provisional
Probab=100.00 E-value=3e-42 Score=337.30 Aligned_cols=337 Identities=19% Similarity=0.273 Sum_probs=244.9
Q ss_pred CCCcEEEECCChHHHHHHHHhhc-CCcEEEEcCCCceeeeccce---e-----------------e---ee---cccccc
Q 017664 15 EKKKVVVIGGGVGGSLLAYHIQS-FADVVLIDEKEYFEITWASL---R-----------------A---VV---EPSFAV 67 (368)
Q Consensus 15 ~~~~vvIIGaG~aGl~aA~~L~~-g~~v~lie~~~~~~~~~~~~---~-----------------~---~~---~~~~~~ 67 (368)
..+|++||||||||++||.+|++ |.+|+|||++ .+|+.+... . . .+ .+.+..
T Consensus 97 ~~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~-~~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 175 (561)
T PRK13748 97 RPLHVAVIGSGGAAMAAALKAVEQGARVTLIERG-TIGGTCVNVGCVPSKIMIRAAHIAHLRRESPFDGGIAATVPTIDR 175 (561)
T ss_pred CCCCEEEECcCHHHHHHHHHHHhCCCeEEEEecC-cceeeccccCccccHHHHHHHHHHHHHhcccccCCccCCCCccCH
Confidence 46999999999999999999985 9999999997 566543110 0 0 00 001111
Q ss_pred cceee-------------ccccc---CceeEEEeEEEEeeccEEE--ecCC--eEEEecEEEEecCCCCCCCCchHH---
Q 017664 68 RSVIN-------------HGDYL---SNVKIVVSTAVSITDTEVV--TAGG--QTFVYDYVVVATGHVESVPKSRTE--- 124 (368)
Q Consensus 68 ~~~~~-------------~~~~~---~~~~~~~~~~~~~~~~~v~--~~~g--~~~~~d~lvlAtG~~~~~p~~~~~--- 124 (368)
+.+.. ....+ .+++++++++..++++.+. +.++ ..++||+||||||+.|..|++++.
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~~d~lviAtGs~p~~p~i~g~~~~ 255 (561)
T PRK13748 176 SRLLAQQQARVDELRHAKYEGILDGNPAITVLHGEARFKDDQTLIVRLNDGGERVVAFDRCLIATGASPAVPPIPGLKET 255 (561)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHhccCCeEEEEEEEEEecCCEEEEEeCCCceEEEEcCEEEEcCCCCCCCCCCCCCCcc
Confidence 10000 00111 2688999999999887543 3455 369999999999999877765431
Q ss_pred HHHHHHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHcCCcEEEecce
Q 017664 125 RLSQYEKDFEKVKSANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQS 204 (368)
Q Consensus 125 ~~~~~~~~~~~~~~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~ 204 (368)
.+.+..........+++++|||+|++|+|+|..+.+ .+.+|+++++. .+++.+++++...+.+.+++.||++++++.
T Consensus 256 ~~~~~~~~~~~~~~~~~vvViGgG~ig~E~A~~l~~--~g~~Vtli~~~-~~l~~~d~~~~~~l~~~l~~~gI~i~~~~~ 332 (561)
T PRK13748 256 PYWTSTEALVSDTIPERLAVIGSSVVALELAQAFAR--LGSKVTILARS-TLFFREDPAIGEAVTAAFRAEGIEVLEHTQ 332 (561)
T ss_pred ceEccHHHhhcccCCCeEEEECCCHHHHHHHHHHHH--cCCEEEEEecC-ccccccCHHHHHHHHHHHHHCCCEEEcCCE
Confidence 122222222222347899999999999999999985 58899999985 466678889999999999999999999999
Q ss_pred eeecccCCC--eEEcCCCcEEecCEEEEccCCCCCchhhhccccccccCCCCcEEeCCCeeecCCCCeEEecccCCCCcc
Q 017664 205 VTLNTISDG--LIETSSGETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITDIPEI 282 (368)
Q Consensus 205 v~~i~~~~~--~v~~~~g~~i~~d~vi~a~G~~p~~~~~~~~~l~~~~~~~g~i~vd~~~~~~~~~~ifa~GD~~~~~~~ 282 (368)
+.+++.+++ .+.+.++ ++++|.+|+++|++|+.+++.....++.++++|+|.||+++|| +.|||||+|||++.+.
T Consensus 333 v~~i~~~~~~~~v~~~~~-~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~g~i~vd~~~~T-s~~~IyA~GD~~~~~~- 409 (561)
T PRK13748 333 ASQVAHVDGEFVLTTGHG-ELRADKLLVATGRAPNTRSLALDAAGVTVNAQGAIVIDQGMRT-SVPHIYAAGDCTDQPQ- 409 (561)
T ss_pred EEEEEecCCEEEEEecCC-eEEeCEEEEccCCCcCCCCcCchhcCceECCCCCEeECCCccc-CCCCEEEeeecCCCcc-
Confidence 998876555 3444555 6999999999999999987544444457788899999999999 8999999999998654
Q ss_pred chHHHHHHHHHHHHHHHHHHHcCCCCC------CccccccCCCeEEEeecCCcceeE--------ecCcc----c-cCcc
Q 017664 283 KQGYLAQKHALVTAKNLKKLMMGRNKG------TMATYKPGYPIALVSLGRREGVAH--------FPFLT----I-SGRI 343 (368)
Q Consensus 283 ~~~~~a~~~g~~aa~~i~~~l~g~~~~------~~~~~~~~~~~~~~~~g~~~~~~~--------~~~~~----~-~~~~ 343 (368)
+.+.|..||+.||.||. |.+.. +...| ..|+++.+|+++.+|... +++.. + .+..
T Consensus 410 -~~~~A~~~g~~aa~~i~----g~~~~~~~~~~p~~~~-~~p~~a~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~ 483 (561)
T PRK13748 410 -FVYVAAAAGTRAAINMT----GGDAALDLTAMPAVVF-TDPQVATVGYSEAEAHHDGIETDSRTLTLDNVPRALANFDT 483 (561)
T ss_pred -chhHHHHHHHHHHHHHc----CCCcccCCCCCCeEEE-ccCCceeeeCCHHHHHHcCCCeEEEEEecccCchhhhcCCC
Confidence 78899999999999997 33211 01111 257899999988765432 22221 1 2345
Q ss_pred ceeeeccccchhHHHHHcCCCCC
Q 017664 344 PGWIKSRDLFVGKTRKQLGLKPT 366 (368)
Q Consensus 344 ~~~~k~~~~~~~~~~~~lG~~~~ 366 (368)
.+++|+ ++++++++|||+|+.
T Consensus 484 ~g~~kl--i~d~~~~~ilG~~~~ 504 (561)
T PRK13748 484 RGFIKL--VIEEGSGRLIGVQAV 504 (561)
T ss_pred CeEEEE--EEECCCCEEEEEEEE
Confidence 789999 999999999999863
No 30
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=100.00 E-value=3.7e-42 Score=329.02 Aligned_cols=342 Identities=20% Similarity=0.275 Sum_probs=247.4
Q ss_pred CCCCCcEEEECCChHHHHHHHHhhc-CCcEEEEcC------CCceeeeccceee------------------e---eccc
Q 017664 13 LVEKKKVVVIGGGVGGSLLAYHIQS-FADVVLIDE------KEYFEITWASLRA------------------V---VEPS 64 (368)
Q Consensus 13 ~~~~~~vvIIGaG~aGl~aA~~L~~-g~~v~lie~------~~~~~~~~~~~~~------------------~---~~~~ 64 (368)
|.+.+|++||||||||++||.++++ |.+|+|||+ ...+|+.+..... . .+..
T Consensus 1 ~~~~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~~~~~~g~~~~Gg~c~n~gc~P~k~l~~~a~~~~~~~~~~~~~G~~ 80 (475)
T PRK06327 1 MSKQFDVVVIGAGPGGYVAAIRAAQLGLKVACIEAWKNPKGKPALGGTCLNVGCIPSKALLASSEEFENAGHHFADHGIH 80 (475)
T ss_pred CCcceeEEEECCCHHHHHHHHHHHhCCCeEEEEecccCCCCCCCcCCccccccccHHHHHHHHHHHHHHHHhhHHhcCcc
Confidence 3457999999999999999999985 999999998 2334432211000 0 0000
Q ss_pred -----ccccceee------------cccc--cCceeEEEeEEEEee----ccEEEec--CCeEEEecEEEEecCCCCCC-
Q 017664 65 -----FAVRSVIN------------HGDY--LSNVKIVVSTAVSIT----DTEVVTA--GGQTFVYDYVVVATGHVESV- 118 (368)
Q Consensus 65 -----~~~~~~~~------------~~~~--~~~~~~~~~~~~~~~----~~~v~~~--~g~~~~~d~lvlAtG~~~~~- 118 (368)
+....+.. ..++ ..+++++.+++..++ ..++... ++..++||+||||||+.|..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~v~v~~~~~~~~~~d~lViATGs~p~~~ 160 (475)
T PRK06327 81 VDGVKIDVAKMIARKDKVVKKMTGGIEGLFKKNKITVLKGRGSFVGKTDAGYEIKVTGEDETVITAKHVIIATGSEPRHL 160 (475)
T ss_pred CCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEecCCCCCCEEEEecCCCeEEEeCEEEEeCCCCCCCC
Confidence 00000000 0001 136788999888887 5566653 34689999999999999853
Q ss_pred CCch--HHHHHHHHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHcCC
Q 017664 119 PKSR--TERLSQYEKDFEKVKSANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKK 196 (368)
Q Consensus 119 p~~~--~~~~~~~~~~~~~~~~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~g 196 (368)
|+.+ ...+.+..........+++++|||+|++|+|+|..+.+ .+.+|+++++.+++++..++++...+.+.++++|
T Consensus 161 p~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~E~A~~l~~--~g~~Vtli~~~~~~l~~~d~~~~~~~~~~l~~~g 238 (475)
T PRK06327 161 PGVPFDNKIILDNTGALNFTEVPKKLAVIGAGVIGLELGSVWRR--LGAEVTILEALPAFLAAADEQVAKEAAKAFTKQG 238 (475)
T ss_pred CCCCCCCceEECcHHHhcccccCCeEEEECCCHHHHHHHHHHHH--cCCeEEEEeCCCccCCcCCHHHHHHHHHHHHHcC
Confidence 4332 22222223222222357999999999999999998885 5889999999999988888999999999999999
Q ss_pred cEEEecceeeecccCCC--eEEcCC--C--cEEecCEEEEccCCCCCchhhhccccccccCCCCcEEeCCCeeecCCCCe
Q 017664 197 VEVILNQSVTLNTISDG--LIETSS--G--ETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNV 270 (368)
Q Consensus 197 v~i~~~~~v~~i~~~~~--~v~~~~--g--~~i~~d~vi~a~G~~p~~~~~~~~~l~~~~~~~g~i~vd~~~~~~~~~~i 270 (368)
|++++++.|.+++.+++ .+.+.+ | +++++|.+++++|++|+.+++....+++.++++|++.||+++|| +.|+|
T Consensus 239 i~i~~~~~v~~i~~~~~~v~v~~~~~~g~~~~i~~D~vl~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd~~~~T-s~~~V 317 (475)
T PRK06327 239 LDIHLGVKIGEIKTGGKGVSVAYTDADGEAQTLEVDKLIVSIGRVPNTDGLGLEAVGLKLDERGFIPVDDHCRT-NVPNV 317 (475)
T ss_pred cEEEeCcEEEEEEEcCCEEEEEEEeCCCceeEEEcCEEEEccCCccCCCCCCcHhhCceeCCCCeEeECCCCcc-CCCCE
Confidence 99999999999886654 344433 3 47999999999999999886554445557788899999999998 79999
Q ss_pred EEecccCCCCccchHHHHHHHHHHHHHHHHHHHcCCCCC------CccccccCCCeEEEeecCCcceeE--------ecC
Q 017664 271 FAIGDITDIPEIKQGYLAQKHALVTAKNLKKLMMGRNKG------TMATYKPGYPIALVSLGRREGVAH--------FPF 336 (368)
Q Consensus 271 fa~GD~~~~~~~~~~~~a~~~g~~aa~~i~~~l~g~~~~------~~~~~~~~~~~~~~~~g~~~~~~~--------~~~ 336 (368)
||+|||+..+. +++.|.+||+.||+||. |+... +...| ..|+++.+|+.++++... +++
T Consensus 318 yA~GD~~~~~~--~~~~A~~~G~~aa~~i~----g~~~~~~~~~~p~~~~-~~pe~a~vGlte~~a~~~g~~~~~~~~~~ 390 (475)
T PRK06327 318 YAIGDVVRGPM--LAHKAEEEGVAVAERIA----GQKGHIDYNTIPWVIY-TSPEIAWVGKTEQQLKAEGVEYKAGKFPF 390 (475)
T ss_pred EEEEeccCCcc--hHHHHHHHHHHHHHHHc----CCCCCCCCCCCCeEEe-CCcceEEEeCCHHHHHHcCCCEEEEEEcc
Confidence 99999997543 78999999999999997 32211 11112 257899999988776432 222
Q ss_pred c-----cccCccceeeeccccchhHHHHHcCCCCC
Q 017664 337 L-----TISGRIPGWIKSRDLFVGKTRKQLGLKPT 366 (368)
Q Consensus 337 ~-----~~~~~~~~~~k~~~~~~~~~~~~lG~~~~ 366 (368)
. .+.+...+++|+ ++++++++|||+|+.
T Consensus 391 ~~~~~~~~~~~~~g~~kl--v~d~~~~~ilG~~~~ 423 (475)
T PRK06327 391 MANGRALAMGEPDGFVKI--IADAKTDEILGVHVI 423 (475)
T ss_pred cccchhhhcCCCCeEEEE--EEECCCCEEEEEEEE
Confidence 1 124556799999 999999999999863
No 31
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=100.00 E-value=5.5e-42 Score=328.05 Aligned_cols=341 Identities=20% Similarity=0.285 Sum_probs=244.6
Q ss_pred CCCCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeeccce---ee-------------------eec---cccc
Q 017664 13 LVEKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITWASL---RA-------------------VVE---PSFA 66 (368)
Q Consensus 13 ~~~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~~~~---~~-------------------~~~---~~~~ 66 (368)
|.+.+|++||||||||++||.+|+ .|.+|+|||++ .+|+.+... .. ... ....
T Consensus 1 ~~~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~ 79 (472)
T PRK05976 1 MAKEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKG-KLGGTCLHKGCIPSKALLHSAEVFQTAKKASPFGISVSGPALD 79 (472)
T ss_pred CCccccEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-CCCcceEcCCcCchHHHHHHHHHHHHHHHHHhcCccCCCCccC
Confidence 456899999999999999999998 49999999986 455433110 00 000 0000
Q ss_pred ccceee------------cccc--cCceeEEEeEEEEeecc-------E--EEecCC--eEEEecEEEEecCCCCCC-CC
Q 017664 67 VRSVIN------------HGDY--LSNVKIVVSTAVSITDT-------E--VVTAGG--QTFVYDYVVVATGHVESV-PK 120 (368)
Q Consensus 67 ~~~~~~------------~~~~--~~~~~~~~~~~~~~~~~-------~--v~~~~g--~~~~~d~lvlAtG~~~~~-p~ 120 (368)
...+.. ..+. ..+++++.+++..++++ + +.+.+| ..+.||+||||||+.|.. |+
T Consensus 80 ~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~a~~i~~~~~~~~~~~~~v~~~~g~~~~~~~d~lViATGs~p~~~p~ 159 (472)
T PRK05976 80 FAKVQERKDGIVDRLTKGVAALLKKGKIDVFHGIGRILGPSIFSPMPGTVSVETETGENEMIIPENLLIATGSRPVELPG 159 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeCCCCCcCCceEEEEEeCCCceEEEEcCEEEEeCCCCCCCCCC
Confidence 000000 0011 12689999999999876 4 444455 579999999999999854 43
Q ss_pred chH--HHHHHHHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHcCCcE
Q 017664 121 SRT--ERLSQYEKDFEKVKSANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVE 198 (368)
Q Consensus 121 ~~~--~~~~~~~~~~~~~~~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~ 198 (368)
.+. ..+.+..........+++++|||+|++|+|+|..|.+ .+.+|+++++.+++++.+++++...+.+.++++||+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~vvIIGgG~~G~E~A~~l~~--~g~~Vtli~~~~~il~~~~~~~~~~l~~~l~~~gI~ 237 (472)
T PRK05976 160 LPFDGEYVISSDEALSLETLPKSLVIVGGGVIGLEWASMLAD--FGVEVTVVEAADRILPTEDAELSKEVARLLKKLGVR 237 (472)
T ss_pred CCCCCceEEcchHhhCccccCCEEEEECCCHHHHHHHHHHHH--cCCeEEEEEecCccCCcCCHHHHHHHHHHHHhcCCE
Confidence 321 1122222222222347899999999999999999985 589999999999999989999999999999999999
Q ss_pred EEecceeeeccc--CCC--eEEcCCC--cEEecCEEEEccCCCCCchhhhccccccccCCCCcEEeCCCeeecCCCCeEE
Q 017664 199 VILNQSVTLNTI--SDG--LIETSSG--ETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFA 272 (368)
Q Consensus 199 i~~~~~v~~i~~--~~~--~v~~~~g--~~i~~d~vi~a~G~~p~~~~~~~~~l~~~~~~~g~i~vd~~~~~~~~~~ifa 272 (368)
+++++.+.+++. +++ .+.+.+| +++++|.+|+++|.+|+.+.+....+++.. .+|++.||+++|+ +.|||||
T Consensus 238 i~~~~~v~~i~~~~~~~~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~-~~g~i~Vd~~l~t-s~~~IyA 315 (472)
T PRK05976 238 VVTGAKVLGLTLKKDGGVLIVAEHNGEEKTLEADKVLVSVGRRPNTEGIGLENTDIDV-EGGFIQIDDFCQT-KERHIYA 315 (472)
T ss_pred EEeCcEEEEEEEecCCCEEEEEEeCCceEEEEeCEEEEeeCCccCCCCCCchhcCcee-cCCEEEECCCccc-CCCCEEE
Confidence 999999998874 333 2334566 379999999999999998765444443333 4689999999998 7899999
Q ss_pred ecccCCCCccchHHHHHHHHHHHHHHHHHHHcCCCCCCc-cccc-----cCCCeEEEeecCCcceeE--------ecCc-
Q 017664 273 IGDITDIPEIKQGYLAQKHALVTAKNLKKLMMGRNKGTM-ATYK-----PGYPIALVSLGRREGVAH--------FPFL- 337 (368)
Q Consensus 273 ~GD~~~~~~~~~~~~a~~~g~~aa~~i~~~l~g~~~~~~-~~~~-----~~~~~~~~~~g~~~~~~~--------~~~~- 337 (368)
+|||++.+ ++++.|.+||+.+|+||. |.+..+. +... ..|+++.+|+.++++... .++.
T Consensus 316 iGD~~~~~--~~~~~A~~~g~~aa~~i~----g~~~~~~~~~~~p~~~~~~p~~a~vG~te~~a~~~g~~~~~~~~~~~~ 389 (472)
T PRK05976 316 IGDVIGEP--QLAHVAMAEGEMAAEHIA----GKKPRPFDYAAIPACCYTDPEVASVGLTEEEAKEAGYDVKVGKFPFAA 389 (472)
T ss_pred eeecCCCc--ccHHHHHHHHHHHHHHHc----CCCCCCCCCCCCCEEEECcCceEEEeCCHHHHHHcCCCEEEEEEECCc
Confidence 99999754 478999999999999986 4321111 0111 257888888887665421 2221
Q ss_pred ----cccCccceeeeccccchhHHHHHcCCCCC
Q 017664 338 ----TISGRIPGWIKSRDLFVGKTRKQLGLKPT 366 (368)
Q Consensus 338 ----~~~~~~~~~~k~~~~~~~~~~~~lG~~~~ 366 (368)
.+.+...+++|+ ++++++++|||+|+.
T Consensus 390 ~~~~~~~~~~~g~~kl--i~d~~~~~ilG~~~~ 420 (472)
T PRK05976 390 NGKALTYGESDGFVKV--VADRDTHDILGVQAV 420 (472)
T ss_pred chhhhhcCCCceEEEE--EEECCCCEEEEEEEE
Confidence 134566889999 999999999999863
No 32
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=100.00 E-value=2.6e-41 Score=338.22 Aligned_cols=337 Identities=16% Similarity=0.209 Sum_probs=247.5
Q ss_pred CCcEEEECCChHHHHHHHHhhc-----CCcEEEEcCCCceeeeccceeeeecccccccceeeccccc--CceeEEEe-EE
Q 017664 16 KKKVVVIGGGVGGSLLAYHIQS-----FADVVLIDEKEYFEITWASLRAVVEPSFAVRSVINHGDYL--SNVKIVVS-TA 87 (368)
Q Consensus 16 ~~~vvIIGaG~aGl~aA~~L~~-----g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~ 87 (368)
+++|||||+|+||+.+|..|++ +++|+||++++++.+....+.................+++ .+++++.+ .+
T Consensus 3 ~~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~Y~r~~L~~~~~~~~~~~l~~~~~~~~~~~gI~~~~g~~V 82 (847)
T PRK14989 3 KVRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIAYDRVHLSSYFSHHTAEELSLVREGFYEKHGIKVLVGERA 82 (847)
T ss_pred CCcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCcccCCcchHhHcCCCHHHccCCCHHHHHhCCCEEEcCCEE
Confidence 4589999999999999998852 5899999999998766655544333222222222222222 26788765 57
Q ss_pred EEeecc--EEEecCCeEEEecEEEEecCCCCCCCCchH---------HHHHHHHHHHHHHhcCCeEEEEcCchhHHHHHH
Q 017664 88 VSITDT--EVVTAGGQTFVYDYVVVATGHVESVPKSRT---------ERLSQYEKDFEKVKSANSVLIVGGGPTGVELAG 156 (368)
Q Consensus 88 ~~~~~~--~v~~~~g~~~~~d~lvlAtG~~~~~p~~~~---------~~~~~~~~~~~~~~~~~~v~VvG~g~~~~e~a~ 156 (368)
..+++. .|.+.+|..++||+||||||+.|..|++++ ..+.+..........+++++|||+|++|+|+|.
T Consensus 83 ~~Id~~~~~V~~~~G~~i~yD~LVIATGs~p~~p~ipG~~~~~v~~~rt~~d~~~l~~~~~~~k~vvVIGgG~iGlE~A~ 162 (847)
T PRK14989 83 ITINRQEKVIHSSAGRTVFYDKLIMATGSYPWIPPIKGSETQDCFVYRTIEDLNAIEACARRSKRGAVVGGGLLGLEAAG 162 (847)
T ss_pred EEEeCCCcEEEECCCcEEECCEEEECCCCCcCCCCCCCCCCCCeEEECCHHHHHHHHHHHhcCCeEEEECCCHHHHHHHH
Confidence 777754 677888888999999999999977665432 134444444444556899999999999999999
Q ss_pred HHhhhCCCCeEEEEecCccccc-ccCchhHHHHHHHHHcCCcEEEecceeeecccCC--C--eEEcCCCcEEecCEEEEc
Q 017664 157 EIAVDFPDKKVILVHRGPKLLE-FVGSRASQIALDWLTSKKVEVILNQSVTLNTISD--G--LIETSSGETIDTDCHFMC 231 (368)
Q Consensus 157 ~l~~~~~~~~v~~i~~~~~~l~-~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~--~--~v~~~~g~~i~~d~vi~a 231 (368)
.|.+ .+.+|+++++.+++++ .+++.....+.+.++++||++++++.+.++..++ . .+.+.+|+++++|.+|++
T Consensus 163 ~L~~--~G~~VtvVe~~~~ll~~~ld~~~~~~l~~~L~~~GV~v~~~~~v~~I~~~~~~~~~~v~~~dG~~i~~D~Vv~A 240 (847)
T PRK14989 163 ALKN--LGVETHVIEFAPMLMAEQLDQMGGEQLRRKIESMGVRVHTSKNTLEIVQEGVEARKTMRFADGSELEVDFIVFS 240 (847)
T ss_pred HHHH--cCCeEEEEeccccchhhhcCHHHHHHHHHHHHHCCCEEEcCCeEEEEEecCCCceEEEEECCCCEEEcCEEEEC
Confidence 9985 5889999999998887 5889999999999999999999999999886542 2 577889999999999999
Q ss_pred cCCCCCchhhhccccccccCCCCcEEeCCCeeecCCCCeEEecccCCCCcc--chHHHHHHHHHHHHHHHHHHHcCCCCC
Q 017664 232 TGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITDIPEI--KQGYLAQKHALVTAKNLKKLMMGRNKG 309 (368)
Q Consensus 232 ~G~~p~~~~~~~~~l~~~~~~~g~i~vd~~~~~~~~~~ifa~GD~~~~~~~--~~~~~a~~~g~~aa~~i~~~l~g~~~~ 309 (368)
+|.+|+.+++...++ .++++|+|.||+++|| +.|||||+|||+..+.. .+...|.+||++||+||. |.+.
T Consensus 241 ~G~rPn~~L~~~~Gl--~~~~~G~I~VD~~l~T-s~p~IYAiGD~a~~~~~~~gl~~~a~~~a~vaa~~i~----g~~~- 312 (847)
T PRK14989 241 TGIRPQDKLATQCGL--AVAPRGGIVINDSCQT-SDPDIYAIGECASWNNRVFGLVAPGYKMAQVAVDHLL----GSEN- 312 (847)
T ss_pred CCcccCchHHhhcCc--cCCCCCcEEECCCCcC-CCCCEEEeecceeEcCcccccHHHHHHHHHHHHHHhc----CCCc-
Confidence 999999988776666 5678899999999999 89999999999987432 367889999999999997 5431
Q ss_pred CccccccCC------CeEEEeecCCcceeEe-cCcccc-CccceeeeccccchhHHHHHcCCCC
Q 017664 310 TMATYKPGY------PIALVSLGRREGVAHF-PFLTIS-GRIPGWIKSRDLFVGKTRKQLGLKP 365 (368)
Q Consensus 310 ~~~~~~~~~------~~~~~~~g~~~~~~~~-~~~~~~-~~~~~~~k~~~~~~~~~~~~lG~~~ 365 (368)
. +.+...+ .+.+.++|.......- ....+. +...++.|+ ++++++++|||+|+
T Consensus 313 ~-~~g~~~~~~lk~~G~~v~s~G~~~~~~~~~~~~~~~~~~~~~y~Kl--v~~~~~~~LlGa~l 373 (847)
T PRK14989 313 A-FEGADLSAKLKLLGVDVGGIGDAHGRTPGARSYVYLDESKEIYKRL--IVSEDNKTLLGAVL 373 (847)
T ss_pred C-CCCcccceEEEECCcceEecccccCCCCCceeEEEEcCCCCEEEEE--EEECCCCEEEEEEE
Confidence 1 1111111 1122233421111000 001122 223567888 99999999999986
No 33
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=100.00 E-value=2e-41 Score=324.06 Aligned_cols=340 Identities=24% Similarity=0.345 Sum_probs=245.9
Q ss_pred CCcEEEECCChHHHHHHHHhhc-CCcEEEEcCCCceeeeccceeee--------------e----ccc-------ccccc
Q 017664 16 KKKVVVIGGGVGGSLLAYHIQS-FADVVLIDEKEYFEITWASLRAV--------------V----EPS-------FAVRS 69 (368)
Q Consensus 16 ~~~vvIIGaG~aGl~aA~~L~~-g~~v~lie~~~~~~~~~~~~~~~--------------~----~~~-------~~~~~ 69 (368)
.+||+||||||||++||.+|++ |.+|+|||+ +.+|+.+...... . ... +....
T Consensus 1 ~yDvvVIG~G~aGl~aA~~la~~G~~v~lie~-~~~GG~~~~~gc~Psk~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 79 (461)
T TIGR01350 1 AYDVVVIGGGPGGYVAAIRAAQLGLKVALVEK-EYLGGTCLNVGCIPTKALLHSAEVYDEIKHAKDYGIEVENVSVDWEK 79 (461)
T ss_pred CccEEEECCCHHHHHHHHHHHhCCCeEEEEec-CCCCCceeecCccchHHHHHHhhHHHHHHHHHhcCCCCCCCcCCHHH
Confidence 3899999999999999999984 999999999 6666543211000 0 000 00000
Q ss_pred eeecc------------cc--cCceeEEEeEEEEeeccEEEec--CC-eEEEecEEEEecCCCCCCCCch----HHHHHH
Q 017664 70 VINHG------------DY--LSNVKIVVSTAVSITDTEVVTA--GG-QTFVYDYVVVATGHVESVPKSR----TERLSQ 128 (368)
Q Consensus 70 ~~~~~------------~~--~~~~~~~~~~~~~~~~~~v~~~--~g-~~~~~d~lvlAtG~~~~~p~~~----~~~~~~ 128 (368)
+.... .+ ..+++++.+++..++++.+... ++ ..++||+||+|||+.|..|+.+ ...+.+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~d~lVlAtG~~p~~~~~~~~~~~~~~~~ 159 (461)
T TIGR01350 80 MQKRKNKVVKKLVGGVKGLLKKNKVTVIKGEAKFLDPGTVLVTGENGEETLTAKNIIIATGSRPRSLPGPFDFDGEVVIT 159 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEecCCCcEEEEeCEEEEcCCCCCCCCCCCCCCCCceEEc
Confidence 00000 00 1257888888888887755443 33 5799999999999998766542 111333
Q ss_pred HHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHcCCcEEEecceeeec
Q 017664 129 YEKDFEKVKSANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVTLN 208 (368)
Q Consensus 129 ~~~~~~~~~~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i 208 (368)
..........+++++|||+|++|+|+|..+.+ .+.+|+++++.+++++.+++++...+.+.+++.||++++++.+.++
T Consensus 160 ~~~~~~~~~~~~~vvViGgG~~g~e~A~~l~~--~g~~Vtli~~~~~~l~~~~~~~~~~~~~~l~~~gi~i~~~~~v~~i 237 (461)
T TIGR01350 160 STGALNLKEVPESLVIIGGGVIGIEFASIFAS--LGSKVTVIEMLDRILPGEDAEVSKVVAKALKKKGVKILTNTKVTAV 237 (461)
T ss_pred chHHhccccCCCeEEEECCCHHHHHHHHHHHH--cCCcEEEEEcCCCCCCCCCHHHHHHHHHHHHHcCCEEEeCCEEEEE
Confidence 33333323357899999999999999999985 4889999999999999899999999999999999999999999988
Q ss_pred ccCCC--eEEcCCC--cEEecCEEEEccCCCCCch--hhhccccccccCCCCcEEeCCCeeecCCCCeEEecccCCCCcc
Q 017664 209 TISDG--LIETSSG--ETIDTDCHFMCTGKAMASS--WLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITDIPEI 282 (368)
Q Consensus 209 ~~~~~--~v~~~~g--~~i~~d~vi~a~G~~p~~~--~~~~~~l~~~~~~~g~i~vd~~~~~~~~~~ifa~GD~~~~~~~ 282 (368)
+.+++ .+.+.+| +++++|.+|+|+|..|+.+ ++...+ +.++++|++.||+++|+ +.|+|||+|||++.+
T Consensus 238 ~~~~~~v~v~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~g--l~~~~~g~i~vd~~l~t-~~~~IyaiGD~~~~~-- 312 (461)
T TIGR01350 238 EKNDDQVVYENKGGETETLTGEKVLVAVGRKPNTEGLGLENLG--VELDERGRIVVDEYMRT-NVPGIYAIGDVIGGP-- 312 (461)
T ss_pred EEeCCEEEEEEeCCcEEEEEeCEEEEecCCcccCCCCCcHhhC--ceECCCCcEeeCCCccc-CCCCEEEeeecCCCc--
Confidence 76655 4555566 5799999999999999987 344444 46788899999999999 799999999999754
Q ss_pred chHHHHHHHHHHHHHHHHHHHcCC---CCCCccccccCCCeEEEeecCCccee--------EecCc-----cccCcccee
Q 017664 283 KQGYLAQKHALVTAKNLKKLMMGR---NKGTMATYKPGYPIALVSLGRREGVA--------HFPFL-----TISGRIPGW 346 (368)
Q Consensus 283 ~~~~~a~~~g~~aa~~i~~~l~g~---~~~~~~~~~~~~~~~~~~~g~~~~~~--------~~~~~-----~~~~~~~~~ 346 (368)
++++.|.+||+.+|+||...-... ...+...| ..|+++.+|+.++++.. ..++. ...+...++
T Consensus 313 ~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~~~-~~~~~a~vG~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~ 391 (461)
T TIGR01350 313 MLAHVASHEGIVAAENIAGKEPAPIDYDAVPSCIY-TDPEVASVGLTEEQAKEAGYDVKIGKFPFAANGKALALGETDGF 391 (461)
T ss_pred ccHHHHHHHHHHHHHHHcCCCCCCCCCCCCCeEEe-cCCceEEEeCCHHHHHhCCCCeEEEEEeCccchHHHhcCCCceE
Confidence 378999999999999997421100 00111112 25778888887776543 22221 123556789
Q ss_pred eeccccchhHHHHHcCCCCC
Q 017664 347 IKSRDLFVGKTRKQLGLKPT 366 (368)
Q Consensus 347 ~k~~~~~~~~~~~~lG~~~~ 366 (368)
+|+ ++++++++|||+|+.
T Consensus 392 ~kl--~~~~~~~~ilG~~~~ 409 (461)
T TIGR01350 392 VKI--IADKKTGEILGAHII 409 (461)
T ss_pred EEE--EEECCCCEEEEEEEE
Confidence 999 999999999999863
No 34
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=100.00 E-value=5.4e-41 Score=319.82 Aligned_cols=335 Identities=21% Similarity=0.270 Sum_probs=241.1
Q ss_pred cEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeec---c-----ce-------------ee-ee-----cccccccc
Q 017664 18 KVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITW---A-----SL-------------RA-VV-----EPSFAVRS 69 (368)
Q Consensus 18 ~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~---~-----~~-------------~~-~~-----~~~~~~~~ 69 (368)
+++||||||||++||.+|+ .|.+|+|||+++. |+.. . .+ .. .+ ........
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~~~-GG~c~n~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~~ 80 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEADL-GGTCLNEGCMPTKSLLESAEVHDKVKKANHFGITLPNGSISIDWKQ 80 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECCcc-cccCCCCccccchHHHHHHHHHHHHHHHHhcCccccCCCCccCHHH
Confidence 8999999999999999997 4999999999763 3211 0 00 00 00 00001011
Q ss_pred eeec------------ccc--cCceeEEEeEEEEeeccEEEe--cCC-eEEEecEEEEecCCCCCCCCch---HHHHHHH
Q 017664 70 VINH------------GDY--LSNVKIVVSTAVSITDTEVVT--AGG-QTFVYDYVVVATGHVESVPKSR---TERLSQY 129 (368)
Q Consensus 70 ~~~~------------~~~--~~~~~~~~~~~~~~~~~~v~~--~~g-~~~~~d~lvlAtG~~~~~p~~~---~~~~~~~ 129 (368)
+..+ ... ..+++++++++..++++++.. .++ ..++||+||||||++|..|++. ...+.+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~~~~v~v~~~~~~~~~~~d~lviATGs~p~~~p~~~~~~~~v~~~ 160 (458)
T PRK06912 81 MQARKSQIVTQLVQGIQYLMKKNKIKVIQGKASFETDHRVRVEYGDKEEVVDAEQFIIAAGSEPTELPFAPFDGKWIINS 160 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEccCCEEEEeeCCCcEEEECCEEEEeCCCCCCCCCCCCCCCCeEEcc
Confidence 1000 001 126889999999999886543 344 4799999999999998655432 2222233
Q ss_pred HHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHcCCcEEEecceeeecc
Q 017664 130 EKDFEKVKSANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVTLNT 209 (368)
Q Consensus 130 ~~~~~~~~~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~ 209 (368)
.........+++++|||+|++|+|+|..+.+ .+.+|+++++.+++++..++++.+.+.+.+++.||++++++.+.+++
T Consensus 161 ~~~~~~~~~~~~vvIIGgG~iG~E~A~~l~~--~g~~Vtli~~~~~ll~~~d~e~~~~l~~~L~~~GI~i~~~~~V~~i~ 238 (458)
T PRK06912 161 KHAMSLPSIPSSLLIVGGGVIGCEFASIYSR--LGTKVTIVEMAPQLLPGEDEDIAHILREKLENDGVKIFTGAALKGLN 238 (458)
T ss_pred hHHhCccccCCcEEEECCCHHHHHHHHHHHH--cCCeEEEEecCCCcCccccHHHHHHHHHHHHHCCCEEEECCEEEEEE
Confidence 3333333347899999999999999998874 58899999999999998899999999999999999999999999887
Q ss_pred cCCCeEEc-CCC--cEEecCEEEEccCCCCCchhhhccccccccCCCCcEEeCCCeeecCCCCeEEecccCCCCccchHH
Q 017664 210 ISDGLIET-SSG--ETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITDIPEIKQGY 286 (368)
Q Consensus 210 ~~~~~v~~-~~g--~~i~~d~vi~a~G~~p~~~~~~~~~l~~~~~~~g~i~vd~~~~~~~~~~ifa~GD~~~~~~~~~~~ 286 (368)
.++..+.+ .+| +++++|.+++|+|.+|+.+.+.....++..+++| +.||+++|| +.|||||+|||++.+ ++++
T Consensus 239 ~~~~~v~~~~~g~~~~i~~D~vivA~G~~p~~~~l~l~~~gv~~~~~g-i~Vd~~~~t-s~~~VyA~GD~~~~~--~la~ 314 (458)
T PRK06912 239 SYKKQALFEYEGSIQEVNAEFVLVSVGRKPRVQQLNLEKAGVQFSNKG-ISVNEHMQT-NVPHIYACGDVIGGI--QLAH 314 (458)
T ss_pred EcCCEEEEEECCceEEEEeCEEEEecCCccCCCCCCchhcCceecCCC-EEeCCCeec-CCCCEEEEeecCCCc--ccHH
Confidence 65543332 234 3799999999999999987654333344566666 999999998 799999999999753 4789
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCC----Cc--cccccCCCeEEEeecCCcceeE--------ecCcc-----ccCccceee
Q 017664 287 LAQKHALVTAKNLKKLMMGRNKG----TM--ATYKPGYPIALVSLGRREGVAH--------FPFLT-----ISGRIPGWI 347 (368)
Q Consensus 287 ~a~~~g~~aa~~i~~~l~g~~~~----~~--~~~~~~~~~~~~~~g~~~~~~~--------~~~~~-----~~~~~~~~~ 347 (368)
.|.+||+.||.||. |.+.. .. ..| ..|+++.+|+++++|..+ +++.. ..+...+++
T Consensus 315 ~A~~~g~~aa~~~~----g~~~~~~~~~~p~~v~-~~p~~a~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~ 389 (458)
T PRK06912 315 VAFHEGTTAALHAS----GEDVKVNYHAVPRCIY-TSPEIASVGLTEKQAREQYGDIRIGEFPFTANGKALIIGEQTGKV 389 (458)
T ss_pred HHHHHHHHHHHHHc----CCCCCCCcCCCCeEEe-cCchhEEeeCCHHHHHHCCCCeEEEEEecCcchhHhhcCCCceEE
Confidence 99999999999986 33211 11 112 247889999988776432 12211 244567899
Q ss_pred eccccchhHHHHHcCCCCC
Q 017664 348 KSRDLFVGKTRKQLGLKPT 366 (368)
Q Consensus 348 k~~~~~~~~~~~~lG~~~~ 366 (368)
|+ ++++++++|||+|+.
T Consensus 390 kl--i~d~~~~~ilG~~~~ 406 (458)
T PRK06912 390 KV--IVEPKYQEIVGISII 406 (458)
T ss_pred EE--EEECCCCEEEEEEEE
Confidence 99 999999999999863
No 35
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=100.00 E-value=3.1e-41 Score=328.06 Aligned_cols=280 Identities=21% Similarity=0.307 Sum_probs=208.5
Q ss_pred ceeEEEeEEEEeeccEEEe-cCCeEEEecEEEEecCCCCCCCCc---hHHHHHHHHHHHHHHhcCCeEEEEcCchhHHHH
Q 017664 79 NVKIVVSTAVSITDTEVVT-AGGQTFVYDYVVVATGHVESVPKS---RTERLSQYEKDFEKVKSANSVLIVGGGPTGVEL 154 (368)
Q Consensus 79 ~~~~~~~~~~~~~~~~v~~-~~g~~~~~d~lvlAtG~~~~~p~~---~~~~~~~~~~~~~~~~~~~~v~VvG~g~~~~e~ 154 (368)
+++++.+....++++++.. .+++.+.||+||||||+.|.+|+. +...+.+..........+++++|||+|++|+|+
T Consensus 248 ~v~vi~G~a~f~~~~~v~v~~~g~~i~ad~lIIATGS~P~~P~~~~~~~~~V~ts~d~~~l~~lpk~VvIVGgG~iGvE~ 327 (659)
T PTZ00153 248 HVQVIYERGHIVDKNTIKSEKSGKEFKVKNIIIATGSTPNIPDNIEVDQKSVFTSDTAVKLEGLQNYMGIVGMGIIGLEF 327 (659)
T ss_pred ceEEEEeEEEEecCCeEEEccCCEEEECCEEEEcCCCCCCCCCCCCCCCCcEEehHHhhhhhhcCCceEEECCCHHHHHH
Confidence 3678888998889887755 366789999999999999988763 222233333333333347899999999999999
Q ss_pred HHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHH-HcCCcEEEecceeeecccCCC----eEEcC-------CC--
Q 017664 155 AGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWL-TSKKVEVILNQSVTLNTISDG----LIETS-------SG-- 220 (368)
Q Consensus 155 a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l-~~~gv~i~~~~~v~~i~~~~~----~v~~~-------~g-- 220 (368)
|..+.+ .+.+|+++++.+++++.+++++.+.+.+.+ +++||++++++.|.+++.+++ .+.+. ++
T Consensus 328 A~~l~~--~G~eVTLIe~~~~ll~~~d~eis~~l~~~ll~~~GV~I~~~~~V~~I~~~~~~~~v~v~~~~~~~~~~~~~~ 405 (659)
T PTZ00153 328 MDIYTA--LGSEVVSFEYSPQLLPLLDADVAKYFERVFLKSKPVRVHLNTLIEYVRAGKGNQPVIIGHSERQTGESDGPK 405 (659)
T ss_pred HHHHHh--CCCeEEEEeccCcccccCCHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEEEeccccccccccc
Confidence 998884 588999999999999999999999998875 679999999999998876543 22221 11
Q ss_pred ------cEEecCEEEEccCCCCCchhhhccccccccCCCCcEEeCCCeeecC-----CCCeEEecccCCCCccchHHHHH
Q 017664 221 ------ETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRG-----FKNVFAIGDITDIPEIKQGYLAQ 289 (368)
Q Consensus 221 ------~~i~~d~vi~a~G~~p~~~~~~~~~l~~~~~~~g~i~vd~~~~~~~-----~~~ifa~GD~~~~~~~~~~~~a~ 289 (368)
+++++|.+|+|+|++|+++.+....+++..+ +|+|.||++|||.. .|||||+|||++.+ ++++.|.
T Consensus 406 ~~~~~~~~i~aD~VlvAtGr~Pnt~~L~l~~~gi~~~-~G~I~VDe~lqTs~~~~~~v~~IYAiGDv~g~~--~La~~A~ 482 (659)
T PTZ00153 406 KNMNDIKETYVDSCLVATGRKPNTNNLGLDKLKIQMK-RGFVSVDEHLRVLREDQEVYDNIFCIGDANGKQ--MLAHTAS 482 (659)
T ss_pred cccccceEEEcCEEEEEECcccCCccCCchhcCCccc-CCEEeECCCCCcCCCCCCCCCCEEEEEecCCCc--cCHHHHH
Confidence 3799999999999999998765444444555 59999999999931 69999999999764 4889999
Q ss_pred HHHHHHHHHHHHHH----cC---CCCCCccccc-------cCCCeEEEeecCCcceeEe----------cCcc-----cc
Q 017664 290 KHALVTAKNLKKLM----MG---RNKGTMATYK-------PGYPIALVSLGRREGVAHF----------PFLT-----IS 340 (368)
Q Consensus 290 ~~g~~aa~~i~~~l----~g---~~~~~~~~~~-------~~~~~~~~~~g~~~~~~~~----------~~~~-----~~ 340 (368)
+||+.+|+||.... .+ ........|. ..|+++.+|+++.+|.... .+.. ..
T Consensus 483 ~qg~~aa~ni~g~~~~~~~~~~~~~~~~~~~~~~iP~~ift~PeiA~VGlTE~eA~~~g~~~~v~v~~~~~~~~~ra~~~ 562 (659)
T PTZ00153 483 HQALKVVDWIEGKGKENVNINVENWASKPIIYKNIPSVCYTTPELAFIGLTEKEAKELYPPDNVGVEISFYKANSKVLCE 562 (659)
T ss_pred HHHHHHHHHHcCCCccccccccccccccccccCcCCEEEECcCceEEeeCCHHHHHhcCCCcceEEEEEEecccchhhhc
Confidence 99999999997320 00 0000111111 2578999999888765321 1110 01
Q ss_pred Cc----------------------cceeeeccccchhHHHHHcCCCC
Q 017664 341 GR----------------------IPGWIKSRDLFVGKTRKQLGLKP 365 (368)
Q Consensus 341 ~~----------------------~~~~~k~~~~~~~~~~~~lG~~~ 365 (368)
+. ..+++|+ ++++++++|||+|+
T Consensus 563 ~~~~~p~~~~~~~y~~g~~~~~~~~~G~vKl--i~d~~t~rILGa~i 607 (659)
T PTZ00153 563 NNISFPNNSKNNSYNKGKYNTVDNTEGMVKI--VYLKDTKEILGMFI 607 (659)
T ss_pred cccccccccccccccccccccccCCceEEEE--EEECCCCeEEEEEE
Confidence 11 5789999 99999999999986
No 36
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=100.00 E-value=4.3e-41 Score=320.83 Aligned_cols=343 Identities=16% Similarity=0.150 Sum_probs=242.6
Q ss_pred CCcEEEECCChHHHHHHHHhhc-CCcEEEEcCCC--------ceeeecc---cee---------------e--eecc---
Q 017664 16 KKKVVVIGGGVGGSLLAYHIQS-FADVVLIDEKE--------YFEITWA---SLR---------------A--VVEP--- 63 (368)
Q Consensus 16 ~~~vvIIGaG~aGl~aA~~L~~-g~~v~lie~~~--------~~~~~~~---~~~---------------~--~~~~--- 63 (368)
++|++||||||||+.+|..+++ |.+|+|||+.. .+|+.+. .+. . ....
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~~~~~~~~~~~~GGtc~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~ 81 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFVTPTPLGTRWGIGGTCVNVGCIPKKLMHQAALLGQALKDSRNYGWNVE 81 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCCcceeccccccccCcCchhHHHHHHHHHHHHhhhhhcCcccC
Confidence 5899999999999999999984 99999999731 2443211 000 0 0000
Q ss_pred ---ccccccee------------eccccc--CceeEEEeEEEEeeccEEEec--CC--eEEEecEEEEecCCCCCCCCch
Q 017664 64 ---SFAVRSVI------------NHGDYL--SNVKIVVSTAVSITDTEVVTA--GG--QTFVYDYVVVATGHVESVPKSR 122 (368)
Q Consensus 64 ---~~~~~~~~------------~~~~~~--~~~~~~~~~~~~~~~~~v~~~--~g--~~~~~d~lvlAtG~~~~~p~~~ 122 (368)
.+....+. .....+ .++++++++..+++++++... ++ ..++||+||||||++|..|+++
T Consensus 82 ~~~~~d~~~~~~~~~~~v~~~~~~~~~~~~~~~v~~i~G~a~f~~~~~v~v~~~~g~~~~~~~d~lVIATGs~p~~p~ip 161 (484)
T TIGR01438 82 ETVKHDWNRLSEAVQNHIGSLNWGYRVALREKKVNYENAYAEFVDKHRIKATNKKGKEKIYSAERFLIATGERPRYPGIP 161 (484)
T ss_pred CCcccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEcCCCEEEEeccCCCceEEEeCEEEEecCCCCCCCCCC
Confidence 00000000 000111 278999999999999977553 33 4799999999999998877654
Q ss_pred HH--HHHHHHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHcCCcEEE
Q 017664 123 TE--RLSQYEKDFEKVKSANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVI 200 (368)
Q Consensus 123 ~~--~~~~~~~~~~~~~~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~ 200 (368)
+. ...+..........+++++|||+|++|+|+|..+.+ .+.+|+++.+ +.+++.+++++.+.+++.|+++||+++
T Consensus 162 G~~~~~~~~~~~~~~~~~~~~vvIIGgG~iG~E~A~~l~~--~G~~Vtli~~-~~~l~~~d~~~~~~l~~~L~~~gV~i~ 238 (484)
T TIGR01438 162 GAKELCITSDDLFSLPYCPGKTLVVGASYVALECAGFLAG--IGLDVTVMVR-SILLRGFDQDCANKVGEHMEEHGVKFK 238 (484)
T ss_pred CccceeecHHHhhcccccCCCEEEECCCHHHHHHHHHHHH--hCCcEEEEEe-cccccccCHHHHHHHHHHHHHcCCEEE
Confidence 32 112222333223357899999999999999999985 5889999997 477888999999999999999999999
Q ss_pred ecceeeecccCCC--eEEcCCC---cEEecCEEEEccCCCCCchhhhccccccccCC-CCcEEeCCCeeecCCCCeEEec
Q 017664 201 LNQSVTLNTISDG--LIETSSG---ETIDTDCHFMCTGKAMASSWLRETILKDSLDG-RGRLMVDENLRVRGFKNVFAIG 274 (368)
Q Consensus 201 ~~~~v~~i~~~~~--~v~~~~g---~~i~~d~vi~a~G~~p~~~~~~~~~l~~~~~~-~g~i~vd~~~~~~~~~~ifa~G 274 (368)
+++.+.+++..++ .+.+.++ +++++|.+|+++|++|+++++....+++.+++ +|+|.||+++|| +.|+|||+|
T Consensus 239 ~~~~v~~v~~~~~~~~v~~~~~~~~~~i~~D~vl~a~G~~pn~~~l~l~~~gv~~~~~~G~I~Vd~~~~T-s~p~IyA~G 317 (484)
T TIGR01438 239 RQFVPIKVEQIEAKVKVTFTDSTNGIEEEYDTVLLAIGRDACTRKLNLENVGVKINKKTGKIPADEEEQT-NVPYIYAVG 317 (484)
T ss_pred eCceEEEEEEcCCeEEEEEecCCcceEEEeCEEEEEecCCcCCCcCCcccccceecCcCCeEecCCCccc-CCCCEEEEE
Confidence 9998887765444 4555554 37999999999999999987655555556665 489999999998 899999999
Q ss_pred ccCCCCccchHHHHHHHHHHHHHHHHHHHcC---CCCCCccccccCCCeEEEeecCCcceeEe----------cCcc---
Q 017664 275 DITDIPEIKQGYLAQKHALVTAKNLKKLMMG---RNKGTMATYKPGYPIALVSLGRREGVAHF----------PFLT--- 338 (368)
Q Consensus 275 D~~~~~~~~~~~~a~~~g~~aa~~i~~~l~g---~~~~~~~~~~~~~~~~~~~~g~~~~~~~~----------~~~~--- 338 (368)
||+... +.+++.|.+||+.+|+||...-.. ....+...| ..|+++.+|+++++|.... ++..
T Consensus 318 Dv~~~~-~~l~~~A~~~g~~aa~~i~~~~~~~~~~~~~p~~i~-~~p~ia~vGlte~~a~~~~g~~~~~~~~~~~~~~~~ 395 (484)
T TIGR01438 318 DILEDK-QELTPVAIQAGRLLAQRLFSGSTVICDYENVPTTVF-TPLEYGACGLSEEKAVEKFGEENIEVFHSYFWPLEW 395 (484)
T ss_pred EecCCC-ccchHHHHHHHHHHHHHHhcCCCcccccccCCeEEe-CCCceeeecCCHHHHHHhcCCCcEEEEEeecchhhh
Confidence 999632 236889999999999999731100 000111222 2578999999887765321 1111
Q ss_pred -cc---Cccceeeeccccch-hHHHHHcCCCCC
Q 017664 339 -IS---GRIPGWIKSRDLFV-GKTRKQLGLKPT 366 (368)
Q Consensus 339 -~~---~~~~~~~k~~~~~~-~~~~~~lG~~~~ 366 (368)
.. +...+++|+ +++ +++++|||+|+.
T Consensus 396 ~~~~~~~~~~g~~Kl--i~~~~~t~~ILG~~iv 426 (484)
T TIGR01438 396 TIPSRDNSNKCYAKA--VCNRKENERVVGFHVV 426 (484)
T ss_pred HhhCCCccCCcEEEE--EEecCCCCeEEEEEEE
Confidence 11 114678998 885 579999999863
No 37
>PTZ00052 thioredoxin reductase; Provisional
Probab=100.00 E-value=9.4e-41 Score=319.98 Aligned_cols=339 Identities=19% Similarity=0.194 Sum_probs=241.7
Q ss_pred CCCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCC--------ceeeec---cceee--------------------ee
Q 017664 14 VEKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKE--------YFEITW---ASLRA--------------------VV 61 (368)
Q Consensus 14 ~~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~--------~~~~~~---~~~~~--------------------~~ 61 (368)
..++|++||||||||++||.+|. .|.+|+|||+++ .+|+.. ..... .+
T Consensus 3 ~~~yDviVIG~GpaG~~AA~~aa~~G~~V~lie~~~~~~~~~~~~~GG~C~n~gciPsK~l~~~a~~~~~~~~~~~~~g~ 82 (499)
T PTZ00052 3 TFMYDLVVIGGGSGGMAAAKEAAAHGKKVALFDYVKPSTQGTKWGLGGTCVNVGCVPKKLMHYAANIGSIFHHDSQMYGW 82 (499)
T ss_pred ccccCEEEECCCHHHHHHHHHHHhCCCeEEEEeccCCCCccccccccceeccccccchHHHHHHHHHHHHHHhHHhcCCC
Confidence 34689999999999999999997 599999999632 244331 00100 00
Q ss_pred --cccccccceee------------cccc--cCceeEEEeEEEEeeccEEEecC---CeEEEecEEEEecCCCCCCCC-c
Q 017664 62 --EPSFAVRSVIN------------HGDY--LSNVKIVVSTAVSITDTEVVTAG---GQTFVYDYVVVATGHVESVPK-S 121 (368)
Q Consensus 62 --~~~~~~~~~~~------------~~~~--~~~~~~~~~~~~~~~~~~v~~~~---g~~~~~d~lvlAtG~~~~~p~-~ 121 (368)
........+.. .... ..+++++++++...+++++...+ +..++||+||||||+.|..|. +
T Consensus 83 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~i~g~a~~~~~~~v~v~~~~~~~~i~~d~lIIATGs~p~~p~~i 162 (499)
T PTZ00052 83 KTSSSFNWGKLVTTVQNHIRSLNFSYRTGLRSSKVEYINGLAKLKDEHTVSYGDNSQEETITAKYILIATGGRPSIPEDV 162 (499)
T ss_pred CCCCCcCHHHHHHHHHHHHHHhhHHHHHHhhhcCcEEEEEEEEEccCCEEEEeeCCCceEEECCEEEEecCCCCCCCCCC
Confidence 00000000000 0000 13677888888888888776532 357999999999999987663 4
Q ss_pred hHH--HHHHHHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHcCCcEE
Q 017664 122 RTE--RLSQYEKDFEKVKSANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEV 199 (368)
Q Consensus 122 ~~~--~~~~~~~~~~~~~~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i 199 (368)
+.. ...+..........+++++|||+|++|+|+|..|.+ .+.+|+++++. .+++.+++++.+.+.+.|++.||++
T Consensus 163 ~G~~~~~~~~~~~~~~~~~~~~vvIIGgG~iG~E~A~~l~~--~G~~Vtli~~~-~~l~~~d~~~~~~l~~~l~~~GV~i 239 (499)
T PTZ00052 163 PGAKEYSITSDDIFSLSKDPGKTLIVGASYIGLETAGFLNE--LGFDVTVAVRS-IPLRGFDRQCSEKVVEYMKEQGTLF 239 (499)
T ss_pred CCccceeecHHHHhhhhcCCCeEEEECCCHHHHHHHHHHHH--cCCcEEEEEcC-cccccCCHHHHHHHHHHHHHcCCEE
Confidence 321 112222333323347899999999999999999985 58899999874 5678889999999999999999999
Q ss_pred EecceeeecccCCC--eEEcCCCcEEecCEEEEccCCCCCchhhhccccccccCCCCcEEeCCCeeecCCCCeEEecccC
Q 017664 200 ILNQSVTLNTISDG--LIETSSGETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDIT 277 (368)
Q Consensus 200 ~~~~~v~~i~~~~~--~v~~~~g~~i~~d~vi~a~G~~p~~~~~~~~~l~~~~~~~g~i~vd~~~~~~~~~~ifa~GD~~ 277 (368)
++++.+.+++..++ .+.+.+|+++++|.+++++|++|+.+++....+++.++++|++.+++. || +.|+|||+|||+
T Consensus 240 ~~~~~v~~v~~~~~~~~v~~~~g~~i~~D~vl~a~G~~pn~~~l~l~~~g~~~~~~G~ii~~~~-~T-s~p~IyAiGDv~ 317 (499)
T PTZ00052 240 LEGVVPINIEKMDDKIKVLFSDGTTELFDTVLYATGRKPDIKGLNLNAIGVHVNKSNKIIAPND-CT-NIPNIFAVGDVV 317 (499)
T ss_pred EcCCeEEEEEEcCCeEEEEECCCCEEEcCEEEEeeCCCCCccccCchhcCcEECCCCCEeeCCC-cC-CCCCEEEEEEec
Confidence 99999887765443 566778888999999999999999988765555557788898877777 87 899999999998
Q ss_pred CCCccchHHHHHHHHHHHHHHHHHHHcCCCCC-------CccccccCCCeEEEeecCCcceeEe----------cCcc--
Q 017664 278 DIPEIKQGYLAQKHALVTAKNLKKLMMGRNKG-------TMATYKPGYPIALVSLGRREGVAHF----------PFLT-- 338 (368)
Q Consensus 278 ~~~~~~~~~~a~~~g~~aa~~i~~~l~g~~~~-------~~~~~~~~~~~~~~~~g~~~~~~~~----------~~~~-- 338 (368)
... +.+++.|.+||+.+|+||. +.... +...| ..|+++.+|+++++|.... ++..
T Consensus 318 ~~~-~~l~~~A~~~g~~aa~ni~----g~~~~~~~~~~~p~~if-t~p~ia~vGlte~~A~~~~~~~~~~~~~~~~~~~~ 391 (499)
T PTZ00052 318 EGR-PELTPVAIKAGILLARRLF----KQSNEFIDYTFIPTTIF-TPIEYGACGYSSEAAIAKYGEDDIEEYLQEFNTLE 391 (499)
T ss_pred CCC-cccHHHHHHHHHHHHHHHh----CCCCCcCccccCCeEEe-cCCcceeecCCHHHHHHhcCCCCEEEEEeecccch
Confidence 632 3478999999999999997 32111 11122 2588999999888775321 1111
Q ss_pred ---ccC---------------ccceeeeccccchh-HHHHHcCCCC
Q 017664 339 ---ISG---------------RIPGWIKSRDLFVG-KTRKQLGLKP 365 (368)
Q Consensus 339 ---~~~---------------~~~~~~k~~~~~~~-~~~~~lG~~~ 365 (368)
... ...+|+|+ ++++ ++++|||+|+
T Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~g~~Kl--i~~~~~~~~IlG~~i 435 (499)
T PTZ00052 392 IAAVHREKHERARKDEYDFDVSSNCLAKL--VCVKSEDNKVVGFHF 435 (499)
T ss_pred hhccccccccccccccccccccCCceEEE--EEecCCCCEEEEEEE
Confidence 001 14689998 9997 4899999986
No 38
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=100.00 E-value=2.8e-39 Score=302.79 Aligned_cols=280 Identities=19% Similarity=0.265 Sum_probs=211.0
Q ss_pred CCCcEEEECCChHHHHHHHHhhc-C--CcEEEEcCCCceeeeccceee-eecccccccceeeccccc--CceeEEEe-EE
Q 017664 15 EKKKVVVIGGGVGGSLLAYHIQS-F--ADVVLIDEKEYFEITWASLRA-VVEPSFAVRSVINHGDYL--SNVKIVVS-TA 87 (368)
Q Consensus 15 ~~~~vvIIGaG~aGl~aA~~L~~-g--~~v~lie~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~ 87 (368)
++.+|||||||+||++||..|++ + .+|+|+++++.+.+....+.. ...............+++ .+++++.+ .+
T Consensus 2 ~~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~~y~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~V 81 (396)
T PRK09754 2 KEKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLPYERPPLSKSMLLEDSPQLQQVLPANWWQENNVHLHSGVTI 81 (396)
T ss_pred CcCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCCCCCCCCCCHHHHCCCCccccccCCHHHHHHCCCEEEcCCEE
Confidence 45689999999999999999984 4 589999999877654333321 111111111111111222 36777765 56
Q ss_pred EEeec--cEEEecCCeEEEecEEEEecCCCCCCCCc---hHH------HHHHHHHHHHHHhcCCeEEEEcCchhHHHHHH
Q 017664 88 VSITD--TEVVTAGGQTFVYDYVVVATGHVESVPKS---RTE------RLSQYEKDFEKVKSANSVLIVGGGPTGVELAG 156 (368)
Q Consensus 88 ~~~~~--~~v~~~~g~~~~~d~lvlAtG~~~~~p~~---~~~------~~~~~~~~~~~~~~~~~v~VvG~g~~~~e~a~ 156 (368)
..++. +.+.+.+|..+.||+||||||+.|..|+. ... .+.+.....+.+..+++++|||+|++|+|+|.
T Consensus 82 ~~id~~~~~v~~~~g~~~~yd~LViATGs~~~~~p~~~~~~~~v~~~~~~~da~~l~~~~~~~~~vvViGgG~ig~E~A~ 161 (396)
T PRK09754 82 KTLGRDTRELVLTNGESWHWDQLFIATGAAARPLPLLDALGERCFTLRHAGDAARLREVLQPERSVVIVGAGTIGLELAA 161 (396)
T ss_pred EEEECCCCEEEECCCCEEEcCEEEEccCCCCCCCCCCCcCCCCEEecCCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHH
Confidence 67765 47788888899999999999999755432 111 23344444445556899999999999999999
Q ss_pred HHhhhCCCCeEEEEecCcccccc-cCchhHHHHHHHHHcCCcEEEecceeeecccCCC-eEEcCCCcEEecCEEEEccCC
Q 017664 157 EIAVDFPDKKVILVHRGPKLLEF-VGSRASQIALDWLTSKKVEVILNQSVTLNTISDG-LIETSSGETIDTDCHFMCTGK 234 (368)
Q Consensus 157 ~l~~~~~~~~v~~i~~~~~~l~~-~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~-~v~~~~g~~i~~d~vi~a~G~ 234 (368)
.|.+ .+.+|+++++.+++++. .++.....+.+.++++||++++++.+.+++.++. .+.+.+|+++++|.+|+++|.
T Consensus 162 ~l~~--~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~~v~l~~g~~i~aD~Vv~a~G~ 239 (396)
T PRK09754 162 SATQ--RRCKVTVIELAATVMGRNAPPPVQRYLLQRHQQAGVRILLNNAIEHVVDGEKVELTLQSGETLQADVVIYGIGI 239 (396)
T ss_pred HHHH--cCCeEEEEecCCcchhhhcCHHHHHHHHHHHHHCCCEEEeCCeeEEEEcCCEEEEEECCCCEEECCEEEECCCC
Confidence 9985 58899999999988764 5777888899999999999999999998876333 567888999999999999999
Q ss_pred CCCchhhhccccccccCCCCcEEeCCCeeecCCCCeEEecccCCCCcc-------chHHHHHHHHHHHHHHHHH
Q 017664 235 AMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITDIPEI-------KQGYLAQKHALVTAKNLKK 301 (368)
Q Consensus 235 ~p~~~~~~~~~l~~~~~~~g~i~vd~~~~~~~~~~ifa~GD~~~~~~~-------~~~~~a~~~g~~aa~~i~~ 301 (368)
.|+..++...++ .. ++.+.||+++|| +.|||||+|||+..+.+ .++..|.+||+.||+||..
T Consensus 240 ~pn~~l~~~~gl--~~--~~gi~vd~~~~t-s~~~IyA~GD~a~~~~~~g~~~~~~~~~~A~~qg~~aa~ni~g 308 (396)
T PRK09754 240 SANDQLAREANL--DT--ANGIVIDEACRT-CDPAIFAGGDVAITRLDNGALHRCESWENANNQAQIAAAAMLG 308 (396)
T ss_pred ChhhHHHHhcCC--Cc--CCCEEECCCCcc-CCCCEEEccceEeeeCCCCCEEEECcHHHHHHHHHHHHHHhcC
Confidence 999888766554 33 356999999998 89999999999965322 3457899999999999983
No 39
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=100.00 E-value=1.4e-38 Score=296.50 Aligned_cols=276 Identities=25% Similarity=0.347 Sum_probs=210.9
Q ss_pred CcEEEECCChHHHHHHHHhhc---CCcEEEEcCCCceeeeccceeeeecccccccc-ee-eccccc--CceeEEE-eEEE
Q 017664 17 KKVVVIGGGVGGSLLAYHIQS---FADVVLIDEKEYFEITWASLRAVVEPSFAVRS-VI-NHGDYL--SNVKIVV-STAV 88 (368)
Q Consensus 17 ~~vvIIGaG~aGl~aA~~L~~---g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~--~~~~~~~-~~~~ 88 (368)
+++||||||+||+++|..|++ +.+|+||++++...+....+............ .. ...+++ .+++++. .++.
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~ 82 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSGDEYNKPDLSHVFSQGQRADDLTRQSAGEFAEQFNLRLFPHTWVT 82 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCCCCcCcCcCcHHHhCCCCHHHhhcCCHHHHHHhCCCEEECCCEEE
Confidence 589999999999999999974 78999999988655433333222222111111 11 122222 2677764 5777
Q ss_pred Eeecc--EEEecCCeEEEecEEEEecCCCCCCCCchH-------HHHHHHHHHHHHHhcCCeEEEEcCchhHHHHHHHHh
Q 017664 89 SITDT--EVVTAGGQTFVYDYVVVATGHVESVPKSRT-------ERLSQYEKDFEKVKSANSVLIVGGGPTGVELAGEIA 159 (368)
Q Consensus 89 ~~~~~--~v~~~~g~~~~~d~lvlAtG~~~~~p~~~~-------~~~~~~~~~~~~~~~~~~v~VvG~g~~~~e~a~~l~ 159 (368)
.++.. .+.+ ++..+.||+||+|||+.|..|++++ ..+.++.........+++++|||+|++|+|+|..|.
T Consensus 83 ~id~~~~~v~~-~~~~~~yd~LVlATG~~~~~p~i~G~~~v~~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~e~A~~L~ 161 (377)
T PRK04965 83 DIDAEAQVVKS-QGNQWQYDKLVLATGASAFVPPIPGRELMLTLNSQQEYRAAETQLRDAQRVLVVGGGLIGTELAMDLC 161 (377)
T ss_pred EEECCCCEEEE-CCeEEeCCEEEECCCCCCCCCCCCCCceEEEECCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHH
Confidence 77753 5554 6778999999999999977666442 223444444445556899999999999999999998
Q ss_pred hhCCCCeEEEEecCcccccc-cCchhHHHHHHHHHcCCcEEEecceeeecccCCC--eEEcCCCcEEecCEEEEccCCCC
Q 017664 160 VDFPDKKVILVHRGPKLLEF-VGSRASQIALDWLTSKKVEVILNQSVTLNTISDG--LIETSSGETIDTDCHFMCTGKAM 236 (368)
Q Consensus 160 ~~~~~~~v~~i~~~~~~l~~-~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~--~v~~~~g~~i~~d~vi~a~G~~p 236 (368)
+ .+.+|+++++.+++++. +++.+...+.+.+++.||++++++.+.+++.+++ .+.+.+|+++++|.+|+|+|.+|
T Consensus 162 ~--~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vI~a~G~~p 239 (377)
T PRK04965 162 R--AGKAVTLVDNAASLLASLMPPEVSSRLQHRLTEMGVHLLLKSQLQGLEKTDSGIRATLDSGRSIEVDAVIAAAGLRP 239 (377)
T ss_pred h--cCCeEEEEecCCcccchhCCHHHHHHHHHHHHhCCCEEEECCeEEEEEccCCEEEEEEcCCcEEECCEEEECcCCCc
Confidence 5 57899999999888764 5777888999999999999999999998887654 57788999999999999999999
Q ss_pred CchhhhccccccccCCCCcEEeCCCeeecCCCCeEEecccCCCCcc--chHHHHHHHHHHHHHHHH
Q 017664 237 ASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITDIPEI--KQGYLAQKHALVTAKNLK 300 (368)
Q Consensus 237 ~~~~~~~~~l~~~~~~~g~i~vd~~~~~~~~~~ifa~GD~~~~~~~--~~~~~a~~~g~~aa~~i~ 300 (368)
+.+++...++ ..+ +| +.||+++|| +.|||||+|||+..+.. .....|.+||+.+|+||.
T Consensus 240 ~~~l~~~~gl--~~~-~g-i~vd~~l~t-s~~~VyA~GD~a~~~~~~~~~~~~a~~~g~~~a~n~~ 300 (377)
T PRK04965 240 NTALARRAGL--AVN-RG-IVVDSYLQT-SAPDIYALGDCAEINGQVLPFLQPIQLSAMALAKNLL 300 (377)
T ss_pred chHHHHHCCC--CcC-CC-EEECCCccc-CCCCEEEeeecEeECCceeehHHHHHHHHHHHHHHhc
Confidence 9888877765 333 45 999999998 79999999999975421 245668999999999997
No 40
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=100.00 E-value=4.7e-39 Score=279.48 Aligned_cols=339 Identities=20% Similarity=0.279 Sum_probs=263.8
Q ss_pred CCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeeccceee--------------eecc-c------------cc
Q 017664 15 EKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITWASLRA--------------VVEP-S------------FA 66 (368)
Q Consensus 15 ~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~~~~~~--------------~~~~-~------------~~ 66 (368)
..+|++|||+||+|..||.... .|++.++||++..+|+....... .... . +.
T Consensus 38 ~d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~LGGTcLnvGcIPSKALL~nSh~yh~~q~~~~~~rGi~vs~~~~d 117 (506)
T KOG1335|consen 38 NDYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTLGGTCLNVGCIPSKALLNNSHLYHEAQHEDFASRGIDVSSVSLD 117 (506)
T ss_pred ccCCEEEECCCCchHHHHHHHHHhcceeEEEeccCccCceeeeccccccHHHhhhhHHHHHHhhhHHHhcCccccceecC
Confidence 5699999999999999998876 59999999999887754311100 0000 0 00
Q ss_pred ccceeec------------cccc--CceeEEEeEEEEeeccEEEec--CC--eEEEecEEEEecCCC-CCCCCc--hHHH
Q 017664 67 VRSVINH------------GDYL--SNVKIVVSTAVSITDTEVVTA--GG--QTFVYDYVVVATGHV-ESVPKS--RTER 125 (368)
Q Consensus 67 ~~~~~~~------------~~~~--~~~~~~~~~~~~~~~~~v~~~--~g--~~~~~d~lvlAtG~~-~~~p~~--~~~~ 125 (368)
.+..... ...+ .++..+.+....++++.|... || ..+.++++++|||+. +.+|++ +++.
T Consensus 118 l~~~~~~k~~~vk~Lt~gi~~lfkknkV~~~kG~gsf~~p~~V~v~k~dg~~~ii~aKnIiiATGSeV~~~PGI~IDekk 197 (506)
T KOG1335|consen 118 LQAMMKAKDNAVKQLTGGIENLFKKNKVTYVKGFGSFLDPNKVSVKKIDGEDQIIKAKNIIIATGSEVTPFPGITIDEKK 197 (506)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHhhhcCeEEEeeeEeecCCceEEEeccCCCceEEeeeeEEEEeCCccCCCCCeEecCce
Confidence 0000000 0011 156788899999999876543 33 578999999999996 788885 5666
Q ss_pred HHHHHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHcCCcEEEeccee
Q 017664 126 LSQYEKDFEKVKSANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSV 205 (368)
Q Consensus 126 ~~~~~~~~~~~~~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v 205 (368)
+.+....+....-+++++|+|+|.+|+|+..... +.+.+||+++-.+.+.+.+|.+++..+++.|.+.|++|+++++|
T Consensus 198 IVSStgALsL~~vPk~~~viG~G~IGLE~gsV~~--rLGseVT~VEf~~~i~~~mD~Eisk~~qr~L~kQgikF~l~tkv 275 (506)
T KOG1335|consen 198 IVSSTGALSLKEVPKKLTVIGAGYIGLEMGSVWS--RLGSEVTVVEFLDQIGGVMDGEISKAFQRVLQKQGIKFKLGTKV 275 (506)
T ss_pred EEecCCccchhhCcceEEEEcCceeeeehhhHHH--hcCCeEEEEEehhhhccccCHHHHHHHHHHHHhcCceeEeccEE
Confidence 7677776666677999999999999999999887 47999999999999999999999999999999999999999999
Q ss_pred eecccCCC---eEEcCC-----CcEEecCEEEEccCCCCCchhhhccccccccCCCCcEEeCCCeeecCCCCeEEecccC
Q 017664 206 TLNTISDG---LIETSS-----GETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDIT 277 (368)
Q Consensus 206 ~~i~~~~~---~v~~~~-----g~~i~~d~vi~a~G~~p~~~~~~~~~l~~~~~~~g~i~vd~~~~~~~~~~ifa~GD~~ 277 (368)
...+.+.+ .+.+.+ .++++||.+++++|++|-+.-+..+.+++..|++|++.||..+++ ++||||++||+.
T Consensus 276 ~~a~~~~dg~v~i~ve~ak~~k~~tle~DvlLVsiGRrP~t~GLgle~iGi~~D~r~rv~v~~~f~t-~vP~i~~IGDv~ 354 (506)
T KOG1335|consen 276 TSATRNGDGPVEIEVENAKTGKKETLECDVLLVSIGRRPFTEGLGLEKIGIELDKRGRVIVNTRFQT-KVPHIYAIGDVT 354 (506)
T ss_pred EEeeccCCCceEEEEEecCCCceeEEEeeEEEEEccCcccccCCChhhcccccccccceeccccccc-cCCceEEecccC
Confidence 98887654 333322 258999999999999999888888888888899999999999999 799999999999
Q ss_pred CCCccchHHHHHHHHHHHHHHHHHHHcCCC------CCCccccccCCCeEEEeecCCcc--------eeEecCcc-----
Q 017664 278 DIPEIKQGYLAQKHALVTAKNLKKLMMGRN------KGTMATYKPGYPIALVSLGRREG--------VAHFPFLT----- 338 (368)
Q Consensus 278 ~~~~~~~~~~a~~~g~~aa~~i~~~l~g~~------~~~~~~~~~~~~~~~~~~g~~~~--------~~~~~~~~----- 338 (368)
..|. +++.|..||..+.+.|. |.. ..|-.-| .+|+++-||.++.+. ++.|+|..
T Consensus 355 ~gpM--LAhkAeeegI~~VE~i~----g~~~hv~ynciP~v~y-thPEvawVG~TEeqlkeegi~y~vgkfpF~aNsRak 427 (506)
T KOG1335|consen 355 LGPM--LAHKAEEEGIAAVEGIA----GGHGHVDYNCIPSVVY-THPEVAWVGKTEEQLKEEGIKYKVGKFPFSANSRAK 427 (506)
T ss_pred Ccch--hhhhhhhhchhheeeec----ccCcccccCCCCceee-cccceeeeccchhhHHhcCcceEeeeccccccchhh
Confidence 7654 89999999999999887 332 1111223 268999999987765 34555543
Q ss_pred ccCccceeeeccccchhHHHHHcCCCC
Q 017664 339 ISGRIPGWIKSRDLFVGKTRKQLGLKP 365 (368)
Q Consensus 339 ~~~~~~~~~k~~~~~~~~~~~~lG~~~ 365 (368)
......||+|+ ++|+++++|||+|+
T Consensus 428 tn~d~eg~vKv--l~d~~tdkiLGvHi 452 (506)
T KOG1335|consen 428 TNNDTEGFVKV--LADKETDKILGVHI 452 (506)
T ss_pred ccCCccceeEE--EecCCCCcEEEEEE
Confidence 13345799999 99999999999986
No 41
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.1e-38 Score=273.87 Aligned_cols=354 Identities=25% Similarity=0.287 Sum_probs=266.4
Q ss_pred CceeeeccCC----cCCCCCCcEEEECCChHHHHHHHHhhc-CCcEEEEcCCCceeeecc-------cee----------
Q 017664 1 MCVWLWGSTA----AGLVEKKKVVVIGGGVGGSLLAYHIQS-FADVVLIDEKEYFEITWA-------SLR---------- 58 (368)
Q Consensus 1 ~~~~~~~~~~----~~~~~~~~vvIIGaG~aGl~aA~~L~~-g~~v~lie~~~~~~~~~~-------~~~---------- 58 (368)
||++...+.+ ....+.+|.+|||||.+|+++|++.+. |.++.|+|..-.+|+..- .+.
T Consensus 1 ~~r~~~~~~~~~~~a~~~k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f~lGGTCVn~GCVPKKvm~~~a~~~~~~ 80 (478)
T KOG0405|consen 1 MARQMLVDGEIDKMAADVKDFDYLVIGGGSGGVASARRAASHGAKVALCELPFGLGGTCVNVGCVPKKVMWYAADYSEEM 80 (478)
T ss_pred CCccccccCCCCcccccccccceEEEcCCcchhHHhHHHHhcCceEEEEecCCCcCceEEeeccccceeEEehhhhhHHh
Confidence 5665333322 233357999999999999999999884 999999998744442210 000
Q ss_pred -e--------eecccccccceeeccc------------c--cCceeEEEeEEEEeecc--EEEecCCe--EEEecEEEEe
Q 017664 59 -A--------VVEPSFAVRSVINHGD------------Y--LSNVKIVVSTAVSITDT--EVVTAGGQ--TFVYDYVVVA 111 (368)
Q Consensus 59 -~--------~~~~~~~~~~~~~~~~------------~--~~~~~~~~~~~~~~~~~--~v~~~~g~--~~~~d~lvlA 111 (368)
. -....+....+.+.++ . -.+++++.++...+++. .|...|+. .+++++++||
T Consensus 81 ~da~~yG~~~~~~~~fdW~~ik~krdayi~RLngIY~~~L~k~~V~~i~G~a~f~~~~~v~V~~~d~~~~~Ytak~iLIA 160 (478)
T KOG0405|consen 81 EDAKDYGFPINEEGSFDWKVIKQKRDAYILRLNGIYKRNLAKAAVKLIEGRARFVSPGEVEVEVNDGTKIVYTAKHILIA 160 (478)
T ss_pred hhhhhcCCccccccCCcHHHHHhhhhHHHHHHHHHHHhhccccceeEEeeeEEEcCCCceEEEecCCeeEEEecceEEEE
Confidence 0 0011111111111111 0 12578899999999988 55566774 3688999999
Q ss_pred cCCCCCCCCchHHHH-HHHHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccccCchhHHHHHH
Q 017664 112 TGHVESVPKSRTERL-SQYEKDFEKVKSANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALD 190 (368)
Q Consensus 112 tG~~~~~p~~~~~~~-~~~~~~~~~~~~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~ 190 (368)
||.+|.+|.+++..+ .+.+.+.+....+++++|+|+|++++|+|..++ ..+.+++++-|.+.+|..+|+.+++.+.+
T Consensus 161 tGg~p~~PnIpG~E~gidSDgff~Lee~Pkr~vvvGaGYIavE~Agi~~--gLgsethlfiR~~kvLR~FD~~i~~~v~~ 238 (478)
T KOG0405|consen 161 TGGRPIIPNIPGAELGIDSDGFFDLEEQPKRVVVVGAGYIAVEFAGIFA--GLGSETHLFIRQEKVLRGFDEMISDLVTE 238 (478)
T ss_pred eCCccCCCCCCchhhccccccccchhhcCceEEEEccceEEEEhhhHHh--hcCCeeEEEEecchhhcchhHHHHHHHHH
Confidence 999988777664332 344455555567999999999999999999988 57999999999999999999999999999
Q ss_pred HHHcCCcEEEecceeeecccCCC---eEEcCCCcEEecCEEEEccCCCCCchhhhccccccccCCCCcEEeCCCeeecCC
Q 017664 191 WLTSKKVEVILNQSVTLNTISDG---LIETSSGETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGF 267 (368)
Q Consensus 191 ~l~~~gv~i~~~~~v~~i~~~~~---~v~~~~g~~i~~d~vi~a~G~~p~~~~~~~~~l~~~~~~~g~i~vd~~~~~~~~ 267 (368)
.++..||++|+++.++++..... .+.+..|+...+|.++||+|+.|++.-+..+.++++++++|.|.||++.+| |.
T Consensus 239 ~~~~~ginvh~~s~~~~v~K~~~g~~~~i~~~~~i~~vd~llwAiGR~Pntk~L~le~vGVk~~~~g~IivDeYq~T-nv 317 (478)
T KOG0405|consen 239 HLEGRGINVHKNSSVTKVIKTDDGLELVITSHGTIEDVDTLLWAIGRKPNTKGLNLENVGVKTDKNGAIIVDEYQNT-NV 317 (478)
T ss_pred HhhhcceeecccccceeeeecCCCceEEEEeccccccccEEEEEecCCCCcccccchhcceeeCCCCCEEEeccccC-CC
Confidence 99999999999999988776543 456666765569999999999999998898989999999999999999999 89
Q ss_pred CCeEEecccCCCCccchHHHHHHHHHHHHHHHHHHHcCCCCCCccccc--c-----CCCeEEEeecCCcceeEecCc---
Q 017664 268 KNVFAIGDITDIPEIKQGYLAQKHALVTAKNLKKLMMGRNKGTMATYK--P-----GYPIALVSLGRREGVAHFPFL--- 337 (368)
Q Consensus 268 ~~ifa~GD~~~~~~~~~~~~a~~~g~~aa~~i~~~l~g~~~~~~~~~~--~-----~~~~~~~~~g~~~~~~~~~~~--- 337 (368)
|+||++||+++.-. +...|...|+..|+.+.. +....++ .|. | +|+...+||.++||+.++.-.
T Consensus 318 p~I~avGDv~gk~~--LTPVAiaagr~la~rlF~---~~~~~kl-dY~nVp~vVFshP~igtVGLtE~EAiekyg~~~i~ 391 (478)
T KOG0405|consen 318 PSIWAVGDVTGKIN--LTPVAIAAGRKLANRLFG---GGKDTKL-DYENVPCVVFSHPPIGTVGLTEEEAIEKYGKGDIK 391 (478)
T ss_pred CceEEeccccCcEe--cchHHHhhhhhHHHHhhc---CCCCCcc-ccccCceEEEecCCcccccCCHHHHHHHhCccceE
Confidence 99999999997633 678899999988888763 2333333 443 2 578888999999998776311
Q ss_pred -----------cccCc-cceeeeccccchhHHHHHcCCCC
Q 017664 338 -----------TISGR-IPGWIKSRDLFVGKTRKQLGLKP 365 (368)
Q Consensus 338 -----------~~~~~-~~~~~k~~~~~~~~~~~~lG~~~ 365 (368)
.+.+. ..-+||+ ++..++.+++|+|+
T Consensus 392 vy~s~F~pm~~a~~~~k~kt~mKl--vc~~~~eKVvG~hm 429 (478)
T KOG0405|consen 392 VYTSKFNPMKYAMSGRKEKTLMKL--VCAGKSEKVVGVHM 429 (478)
T ss_pred EEecCCchhHhHhhcCCcceEEEE--EEecCCCcEEEEEE
Confidence 12333 3457888 99999999999986
No 42
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=100.00 E-value=3.6e-37 Score=308.90 Aligned_cols=275 Identities=16% Similarity=0.270 Sum_probs=216.1
Q ss_pred EEEECCChHHHHHHHHhhc----CCcEEEEcCCCceeeeccceeeeeccccc-ccceeeccccc--CceeEEEe-EEEEe
Q 017664 19 VVVIGGGVGGSLLAYHIQS----FADVVLIDEKEYFEITWASLRAVVEPSFA-VRSVINHGDYL--SNVKIVVS-TAVSI 90 (368)
Q Consensus 19 vvIIGaG~aGl~aA~~L~~----g~~v~lie~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~-~~~~~ 90 (368)
|||||||+||+++|.+|++ +++|+|||+++..++....+......... .+...+..+++ .+++++.. .+..+
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~y~r~~L~~~l~g~~~~~~l~~~~~~~~~~~gv~~~~g~~V~~I 80 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPNYNRILLSSVLQGEADLDDITLNSKDWYEKHGITLYTGETVIQI 80 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCCcccccccHHHCCCCCHHHccCCCHHHHHHCCCEEEcCCeEEEE
Confidence 6899999999999998762 67999999999887665444433322211 12222333333 26788765 67777
Q ss_pred ec--cEEEecCCeEEEecEEEEecCCCCCCCCchH---------HHHHHHHHHHHHHhcCCeEEEEcCchhHHHHHHHHh
Q 017664 91 TD--TEVVTAGGQTFVYDYVVVATGHVESVPKSRT---------ERLSQYEKDFEKVKSANSVLIVGGGPTGVELAGEIA 159 (368)
Q Consensus 91 ~~--~~v~~~~g~~~~~d~lvlAtG~~~~~p~~~~---------~~~~~~~~~~~~~~~~~~v~VvG~g~~~~e~a~~l~ 159 (368)
++ +.|.+.+|..+.||+||+|||+.|..|++++ ..+.++....+....+++++|||+|++|+|+|..|.
T Consensus 81 d~~~k~V~~~~g~~~~yD~LVlATGs~p~~p~ipG~~~~~v~~~rt~~d~~~i~~~~~~~k~vvVVGgG~~GlE~A~~L~ 160 (785)
T TIGR02374 81 DTDQKQVITDAGRTLSYDKLILATGSYPFILPIPGADKKGVYVFRTIEDLDAIMAMAQRFKKAAVIGGGLLGLEAAVGLQ 160 (785)
T ss_pred ECCCCEEEECCCcEeeCCEEEECCCCCcCCCCCCCCCCCCEEEeCCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHH
Confidence 75 4788888989999999999999976665432 123444444444556899999999999999999998
Q ss_pred hhCCCCeEEEEecCccccc-ccCchhHHHHHHHHHcCCcEEEecceeeecccCCC--eEEcCCCcEEecCEEEEccCCCC
Q 017664 160 VDFPDKKVILVHRGPKLLE-FVGSRASQIALDWLTSKKVEVILNQSVTLNTISDG--LIETSSGETIDTDCHFMCTGKAM 236 (368)
Q Consensus 160 ~~~~~~~v~~i~~~~~~l~-~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~--~v~~~~g~~i~~d~vi~a~G~~p 236 (368)
+ .+.+|+++++.+++++ .+++.....+.+.++++||++++++.+.++..++. .+.+.+|+++++|.+|+++|.+|
T Consensus 161 ~--~G~~Vtvv~~~~~ll~~~ld~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~~~~v~~~dG~~i~~D~Vi~a~G~~P 238 (785)
T TIGR02374 161 N--LGMDVSVIHHAPGLMAKQLDQTAGRLLQRELEQKGLTFLLEKDTVEIVGATKADRIRFKDGSSLEADLIVMAAGIRP 238 (785)
T ss_pred h--cCCeEEEEccCCchhhhhcCHHHHHHHHHHHHHcCCEEEeCCceEEEEcCCceEEEEECCCCEEEcCEEEECCCCCc
Confidence 5 5889999999988876 47888889999999999999999999988875543 67888999999999999999999
Q ss_pred CchhhhccccccccCCCCcEEeCCCeeecCCCCeEEecccCCCCcc--chHHHHHHHHHHHHHHHH
Q 017664 237 ASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITDIPEI--KQGYLAQKHALVTAKNLK 300 (368)
Q Consensus 237 ~~~~~~~~~l~~~~~~~g~i~vd~~~~~~~~~~ifa~GD~~~~~~~--~~~~~a~~~g~~aa~~i~ 300 (368)
+.+++...++ ..+ |.+.||+++|| +.|||||+|||+..+.. .....|.+||+++|.||.
T Consensus 239 n~~la~~~gl--~~~--ggI~Vd~~~~T-s~p~IyA~GD~a~~~~~~~gl~~~a~~qa~vaA~ni~ 299 (785)
T TIGR02374 239 NDELAVSAGI--KVN--RGIIVNDSMQT-SDPDIYAVGECAEHNGRVYGLVAPLYEQAKVLADHIC 299 (785)
T ss_pred CcHHHHhcCC--ccC--CCEEECCCccc-CCCCEEEeeecceeCCcccccHHHHHHHHHHHHHHhc
Confidence 9998877666 333 67999999998 89999999999976542 245678999999999997
No 43
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=100.00 E-value=3.6e-36 Score=265.62 Aligned_cols=320 Identities=29% Similarity=0.374 Sum_probs=232.0
Q ss_pred CCCCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeeccceeeeecccccccceeecccc----cCceeEEEeEE
Q 017664 13 LVEKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITWASLRAVVEPSFAVRSVINHGDY----LSNVKIVVSTA 87 (368)
Q Consensus 13 ~~~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 87 (368)
..++++|||+|+|++|.+.++.|. ..++|+||++.++|-|.|.......+.-.......|.+.. ..++.+++++.
T Consensus 52 ~~kKk~vVVLGsGW~a~S~lk~ldts~YdV~vVSPRnyFlFTPLLpS~~vGTve~rSIvEPIr~i~r~k~~~~~y~eAec 131 (491)
T KOG2495|consen 52 GGKKKRVVVLGSGWGAISLLKKLDTSLYDVTVVSPRNYFLFTPLLPSTTVGTVELRSIVEPIRAIARKKNGEVKYLEAEC 131 (491)
T ss_pred CCCCceEEEEcCchHHHHHHHhccccccceEEeccccceEEeeccCCccccceeehhhhhhHHHHhhccCCCceEEeccc
Confidence 345789999999999999999997 5899999999999998876644333322111122222211 12567888888
Q ss_pred EEeecc--EEE----ecCC----eEEEecEEEEecCCCC---CCCCch-----HHHHHHHHHHH-------H--------
Q 017664 88 VSITDT--EVV----TAGG----QTFVYDYVVVATGHVE---SVPKSR-----TERLSQYEKDF-------E-------- 134 (368)
Q Consensus 88 ~~~~~~--~v~----~~~g----~~~~~d~lvlAtG~~~---~~p~~~-----~~~~~~~~~~~-------~-------- 134 (368)
..+|+. .++ +.++ ..+.|||||+|+|+.+ .+|+.. +..+++..+.. +
T Consensus 132 ~~iDp~~k~V~~~s~t~~~~~~e~~i~YDyLViA~GA~~~TFgipGV~e~~~FLKEv~dAqeIR~~~~~~le~a~~~~l~ 211 (491)
T KOG2495|consen 132 TKIDPDNKKVHCRSLTADSSDKEFVIGYDYLVIAVGAEPNTFGIPGVEENAHFLKEVEDAQEIRRKVIDNLEKAELPGLS 211 (491)
T ss_pred EeecccccEEEEeeeccCCCcceeeecccEEEEeccCCCCCCCCCchhhchhhhhhhhHHHHHHHHHHHHHHHhhcCCCC
Confidence 888864 332 3344 5789999999999995 455532 12222222211 1
Q ss_pred --HHhcCCeEEEEcCchhHHHHHHHHhhh--------CC----CCeEEEEecCcccccccCchhHHHHHHHHHcCCcEEE
Q 017664 135 --KVKSANSVLIVGGGPTGVELAGEIAVD--------FP----DKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVI 200 (368)
Q Consensus 135 --~~~~~~~v~VvG~g~~~~e~a~~l~~~--------~~----~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~ 200 (368)
+..+--+++||||||+|+|+|.+|.+- +| ..+|++++..+.+|+.++..+....++.+.+.||++.
T Consensus 212 ~eerkRlLh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~iL~mFdkrl~~yae~~f~~~~I~~~ 291 (491)
T KOG2495|consen 212 DEERKRLLHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADHILNMFDKRLVEYAENQFVRDGIDLD 291 (491)
T ss_pred hHHhhheEEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchhHHHHHHHHHHHHHHHHhhhccceee
Confidence 112346899999999999999998852 22 3589999999999999999999999999999999999
Q ss_pred ecceeeecccCCCeEEcCCC--cEEecCEEEEccCCCCCchhhhccccccccCCCC--cEEeCCCeeecCCCCeEEeccc
Q 017664 201 LNQSVTLNTISDGLIETSSG--ETIDTDCHFMCTGKAMASSWLRETILKDSLDGRG--RLMVDENLRVRGFKNVFAIGDI 276 (368)
Q Consensus 201 ~~~~v~~i~~~~~~v~~~~g--~~i~~d~vi~a~G~~p~~~~~~~~~l~~~~~~~g--~i~vd~~~~~~~~~~ifa~GD~ 276 (368)
+++.|+.++..+-.+.+.+| ++|++-+++|+||..|. ++...... ..++.| .+.||+.||+++.+||||+|||
T Consensus 292 ~~t~Vk~V~~~~I~~~~~~g~~~~iPYG~lVWatG~~~r-p~~k~lm~--~i~e~~rr~L~vDE~LrV~G~~nvfAiGDc 368 (491)
T KOG2495|consen 292 TGTMVKKVTEKTIHAKTKDGEIEEIPYGLLVWATGNGPR-PVIKDLMK--QIDEQGRRGLAVDEWLRVKGVKNVFAIGDC 368 (491)
T ss_pred cccEEEeecCcEEEEEcCCCceeeecceEEEecCCCCCc-hhhhhHhh--cCCccCceeeeeeceeeccCcCceEEeccc
Confidence 99999977755445556666 48999999999998864 34443332 234444 7999999999999999999999
Q ss_pred CCCCc-cchHHHHHHHHHHHHHHHHHHHcCCCC---CC----------ccccccCCCeEEEeecCCcceeEec
Q 017664 277 TDIPE-IKQGYLAQKHALVTAKNLKKLMMGRNK---GT----------MATYKPGYPIALVSLGRREGVAHFP 335 (368)
Q Consensus 277 ~~~~~-~~~~~~a~~~g~~aa~~i~~~l~g~~~---~~----------~~~~~~~~~~~~~~~g~~~~~~~~~ 335 (368)
+..+. +.+++.|.+||.++|+++....++... +. +.+|.-.-..++..+|.+.|+++++
T Consensus 369 a~~~~~~~tAQVA~QqG~yLAk~fn~m~k~~~~~e~~~~r~~~~~~~~f~PF~Y~H~GalA~lG~ekaiAdl~ 441 (491)
T KOG2495|consen 369 ADQRGLKPTAQVAEQQGAYLAKNFNKMGKGGNLPEGPSARLRGEGRHQFKPFKYKHLGALAYLGREKAIADLP 441 (491)
T ss_pred cccccCccHHHHHHHHHHHHHHHHHHHhcccCCCccchhhhhhhhhhccCCcccccccceeeccccchhhcCc
Confidence 95443 349999999999999999887654321 11 1222212345888999999999987
No 44
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=100.00 E-value=1.2e-35 Score=281.53 Aligned_cols=325 Identities=20% Similarity=0.334 Sum_probs=234.4
Q ss_pred HHHHHhhc---CCcEEEEcCCCceeeeccceeeeecccccc-cceee--ccccc--CceeEE-EeEEEEeec--cEEEec
Q 017664 30 LLAYHIQS---FADVVLIDEKEYFEITWASLRAVVEPSFAV-RSVIN--HGDYL--SNVKIV-VSTAVSITD--TEVVTA 98 (368)
Q Consensus 30 ~aA~~L~~---g~~v~lie~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~--~~~~~~-~~~~~~~~~--~~v~~~ 98 (368)
+||.+|++ +.+|+|||+++.+.+.+..+.......... +.... ..+++ .++++. ..++..+++ +.+.+.
T Consensus 1 saA~~l~~~~~~~~Vtlid~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~~id~~~~~v~~~ 80 (427)
T TIGR03385 1 SAASRVRRLDKESDIIVFEKTEDVSFANCGLPYVIGGVIDDRNKLLAYTPEVFIKKRGIDVKTNHEVIEVNDERQTVVVR 80 (427)
T ss_pred CHHHHHHhhCCCCcEEEEEcCCceeEEcCCCCeEeccccCCHHHcccCCHHHHHHhcCCeEEecCEEEEEECCCCEEEEE
Confidence 46778873 689999999998887665554443332221 11111 11221 267764 567877774 355543
Q ss_pred C---CeEEE--ecEEEEecCCCCCCCCchH---H------HHHHHHHHHHHH--hcCCeEEEEcCchhHHHHHHHHhhhC
Q 017664 99 G---GQTFV--YDYVVVATGHVESVPKSRT---E------RLSQYEKDFEKV--KSANSVLIVGGGPTGVELAGEIAVDF 162 (368)
Q Consensus 99 ~---g~~~~--~d~lvlAtG~~~~~p~~~~---~------~~~~~~~~~~~~--~~~~~v~VvG~g~~~~e~a~~l~~~~ 162 (368)
+ +..+. ||+||||||+.|..|++++ . .+.+.......+ ..+++++|+|+|++|+|+|..|.+
T Consensus 81 ~~~~~~~~~~~yd~lIiATG~~p~~~~i~G~~~~~v~~~~~~~~~~~~~~~l~~~~~~~vvViGgG~~g~e~A~~l~~-- 158 (427)
T TIGR03385 81 NNKTNETYEESYDYLILSPGASPIVPNIEGINLDIVFTLRNLEDTDAIKQYIDKNKVENVVIIGGGYIGIEMAEALRE-- 158 (427)
T ss_pred ECCCCCEEecCCCEEEECCCCCCCCCCCCCcCCCCEEEECCHHHHHHHHHHHhhcCCCeEEEECCCHHHHHHHHHHHh--
Confidence 2 45677 9999999999976665432 1 222233222222 347899999999999999999885
Q ss_pred CCCeEEEEecCccc-ccccCchhHHHHHHHHHcCCcEEEecceeeecccCCCeEEcCCCcEEecCEEEEccCCCCCchhh
Q 017664 163 PDKKVILVHRGPKL-LEFVGSRASQIALDWLTSKKVEVILNQSVTLNTISDGLIETSSGETIDTDCHFMCTGKAMASSWL 241 (368)
Q Consensus 163 ~~~~v~~i~~~~~~-l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~v~~~~g~~i~~d~vi~a~G~~p~~~~~ 241 (368)
.+.+|+++++.+.+ .+.+++++...+.+.+++.||++++++.+.++..++..+.+.+|+++++|.+|+++|.+|+.+++
T Consensus 159 ~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l 238 (427)
T TIGR03385 159 RGKNVTLIHRSERILNKLFDEEMNQIVEEELKKHEINLRLNEEVDSIEGEERVKVFTSGGVYQADMVILATGIKPNSELA 238 (427)
T ss_pred CCCcEEEEECCcccCccccCHHHHHHHHHHHHHcCCEEEeCCEEEEEecCCCEEEEcCCCEEEeCEEEECCCccCCHHHH
Confidence 57899999998887 45678888899999999999999999999988765434466788899999999999999999988
Q ss_pred hccccccccCCCCcEEeCCCeeecCCCCeEEecccCCCCc--------cchHHHHHHHHHHHHHHHHHHHcCCCCCCccc
Q 017664 242 RETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITDIPE--------IKQGYLAQKHALVTAKNLKKLMMGRNKGTMAT 313 (368)
Q Consensus 242 ~~~~l~~~~~~~g~i~vd~~~~~~~~~~ifa~GD~~~~~~--------~~~~~~a~~~g~~aa~~i~~~l~g~~~~~~~~ 313 (368)
...++ .++++|++.||+++|| +.|+|||+|||+..+. +++++.|.+||+.+|+||. |++.. ...
T Consensus 239 ~~~gl--~~~~~G~i~vd~~~~t-~~~~Vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~~a~ni~----g~~~~-~~~ 310 (427)
T TIGR03385 239 KDSGL--KLGETGAIWVNEKFQT-SVPNIYAAGDVAESHNIITKKPAWVPLAWGANKMGRIAGENIA----GNDIE-FKG 310 (427)
T ss_pred HhcCc--ccCCCCCEEECCCcEe-CCCCEEEeeeeEEeeeccCCCceeeechHHHHHHHHHHHHHhc----CCCCC-CCC
Confidence 77665 6678899999999998 7999999999997432 3478899999999999997 43221 111
Q ss_pred --cc-----cCCCeEEEeecCCccee--------EecCc----cccCccceeeeccccchhHHHHHcCCCCC
Q 017664 314 --YK-----PGYPIALVSLGRREGVA--------HFPFL----TISGRIPGWIKSRDLFVGKTRKQLGLKPT 366 (368)
Q Consensus 314 --~~-----~~~~~~~~~~g~~~~~~--------~~~~~----~~~~~~~~~~k~~~~~~~~~~~~lG~~~~ 366 (368)
.. ..++++.+|+++.++.. .+.+. ...+...+++|+ ++++++++|||+|+.
T Consensus 311 ~~~~~~~~~~~~~~a~vG~t~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~g~~kl--i~~~~~~~ilG~~~~ 380 (427)
T TIGR03385 311 VLGTNITKFFDLTIASTGVTENEAKKLNIDYKTVFVKAKTHANYYPGNSPLHLKL--IYEKDTRRILGAQAV 380 (427)
T ss_pred cceeeEEEEcCeEEEEecCCHHHHHHCCCCeEEEEEecCCCCCcCCCCceEEEEE--EEECCCCeEEEEEEE
Confidence 11 24678888887765542 11111 123555788998 999999999999863
No 45
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=100.00 E-value=1e-35 Score=269.40 Aligned_cols=273 Identities=24% Similarity=0.308 Sum_probs=196.2
Q ss_pred CcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeeccceeeee-ccccc-----ccceeeccccc--CceeEEEeEE
Q 017664 17 KKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITWASLRAVV-EPSFA-----VRSVINHGDYL--SNVKIVVSTA 87 (368)
Q Consensus 17 ~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~~~~~~~~-~~~~~-----~~~~~~~~~~~--~~~~~~~~~~ 87 (368)
+||+|||||||||++|..|+ +|.+|+|||+++ .+..+....... .+.+. .+......+++ .+++++...+
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~-~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~~~v 79 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGME-PGGQLTTTTEVENYPGFPEGISGPELMEKMKEQAVKFGAEIIYEEV 79 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEeccC-CCcceeecccccccCCCCCCCChHHHHHHHHHHHHHcCCeEEEEEE
Confidence 58999999999999999997 599999999887 332211110000 01110 00001111111 1567766777
Q ss_pred EEeecc----EEEecCCeEEEecEEEEecCCCCCCCCchHHH------HHHHHHHHHHHhcCCeEEEEcCchhHHHHHHH
Q 017664 88 VSITDT----EVVTAGGQTFVYDYVVVATGHVESVPKSRTER------LSQYEKDFEKVKSANSVLIVGGGPTGVELAGE 157 (368)
Q Consensus 88 ~~~~~~----~v~~~~g~~~~~d~lvlAtG~~~~~p~~~~~~------~~~~~~~~~~~~~~~~v~VvG~g~~~~e~a~~ 157 (368)
..+++. .+.+.++..+.||+||+|||+.|..|++++.. +............+++++|+|+|++|+|+|..
T Consensus 80 ~~v~~~~~~~~v~~~~~~~~~~d~liiAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~~~e~a~~ 159 (300)
T TIGR01292 80 IKVDLSDRPFKVKTGDGKEYTAKAVIIATGASARKLGIPGEDEFLGRGVSYCATCDGPFFKNKEVAVVGGGDSAIEEALY 159 (300)
T ss_pred EEEEecCCeeEEEeCCCCEEEeCEEEECCCCCcccCCCCChhhcCCccEEEeeecChhhcCCCEEEEECCChHHHHHHHH
Confidence 777754 46666778899999999999997766544321 11111111233457899999999999999999
Q ss_pred HhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHcC-CcEEEecceeeecccCCC--eEEc-----CCCcEEecCEEE
Q 017664 158 IAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSK-KVEVILNQSVTLNTISDG--LIET-----SSGETIDTDCHF 229 (368)
Q Consensus 158 l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~-gv~i~~~~~v~~i~~~~~--~v~~-----~~g~~i~~d~vi 229 (368)
+.+ .+.+|+++++.+.+. ....+.+.+++. ||++++++.+.+++.++. .+.+ .+++++++|.+|
T Consensus 160 l~~--~~~~V~~v~~~~~~~------~~~~~~~~l~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vi 231 (300)
T TIGR01292 160 LTR--IAKKVTLVHRRDKFR------AEKILLDRLRKNPNIEFLWNSTVKEIVGDNKVEGVKIKNTVTGEEEELKVDGVF 231 (300)
T ss_pred HHh--hcCEEEEEEeCcccC------cCHHHHHHHHhCCCeEEEeccEEEEEEccCcEEEEEEEecCCCceEEEEccEEE
Confidence 985 478999999887642 234566777777 999999999998876543 2333 223579999999
Q ss_pred EccCCCCCchhhhccccccccCCCCcEEeCCCeeecCCCCeEEecccCCCCccchHHHHHHHHHHHHHHHHHHH
Q 017664 230 MCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITDIPEIKQGYLAQKHALVTAKNLKKLM 303 (368)
Q Consensus 230 ~a~G~~p~~~~~~~~~l~~~~~~~g~i~vd~~~~~~~~~~ifa~GD~~~~~~~~~~~~a~~~g~~aa~~i~~~l 303 (368)
+++|++|+.+++... + .++++|++.||+++++ ++||||++|||++. .++.+..|+.||+.||.+|.++|
T Consensus 232 ~a~G~~~~~~~l~~~-~--~~~~~g~i~v~~~~~t-~~~~vya~GD~~~~-~~~~~~~A~~~g~~aa~~i~~~~ 300 (300)
T TIGR01292 232 IAIGHEPNTELLKGL-L--ELDEGGYIVTDEGMRT-SVPGVFAAGDVRDK-GYRQAVTAAGDGCIAALSAERYL 300 (300)
T ss_pred EeeCCCCChHHHHHh-h--eecCCCcEEECCCCcc-CCCCEEEeecccCc-chhhhhhhhhhHHHHHHHHHhhC
Confidence 999999999888776 4 5677899999999998 89999999999974 34578899999999999998653
No 46
>PRK10262 thioredoxin reductase; Provisional
Probab=100.00 E-value=2.3e-34 Score=262.57 Aligned_cols=281 Identities=18% Similarity=0.200 Sum_probs=195.4
Q ss_pred CCCCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeeccceeee---ec--ccccc----cceeecccccCceeE
Q 017664 13 LVEKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITWASLRAV---VE--PSFAV----RSVINHGDYLSNVKI 82 (368)
Q Consensus 13 ~~~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~~~~~~~---~~--~~~~~----~~~~~~~~~~~~~~~ 82 (368)
..+.+||+|||||||||+||..|+ +|+++++||+.+ .+......... .. ..... +.+....+.+ +.++
T Consensus 3 ~~~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~~-~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 80 (321)
T PRK10262 3 TTKHSKLLILGSGPAGYTAAVYAARANLQPVLITGME-KGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKF-ETEI 80 (321)
T ss_pred CCCcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEeec-CCCceecCceECCCCCCCCCCCHHHHHHHHHHHHHHC-CCEE
Confidence 356789999999999999999987 599999999653 33221111100 00 00000 1111111111 2344
Q ss_pred EEeEEEEeec--cE--EEecCCeEEEecEEEEecCCCCCCCCchHHH------HHHHHHHHHHHhcCCeEEEEcCchhHH
Q 017664 83 VVSTAVSITD--TE--VVTAGGQTFVYDYVVVATGHVESVPKSRTER------LSQYEKDFEKVKSANSVLIVGGGPTGV 152 (368)
Q Consensus 83 ~~~~~~~~~~--~~--v~~~~g~~~~~d~lvlAtG~~~~~p~~~~~~------~~~~~~~~~~~~~~~~v~VvG~g~~~~ 152 (368)
....+..++. +. +... ...+.||+||+|||+.|..|+++... +..+.........+++++|+|+|++|+
T Consensus 81 ~~~~v~~v~~~~~~~~v~~~-~~~~~~d~vilAtG~~~~~~~i~g~~~~~~~~v~~~~~~~~~~~~g~~vvVvGgG~~g~ 159 (321)
T PRK10262 81 IFDHINKVDLQNRPFRLTGD-SGEYTCDALIIATGASARYLGLPSEEAFKGRGVSACATCDGFFYRNQKVAVIGGGNTAV 159 (321)
T ss_pred EeeEEEEEEecCCeEEEEec-CCEEEECEEEECCCCCCCCCCCCCHHHcCCCcEEEeecCCHHHcCCCEEEEECCCHHHH
Confidence 4545544543 23 3332 34689999999999998776654322 111222222345689999999999999
Q ss_pred HHHHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHcCCcEEEecceeeecccCCC---eEEcCC------CcEE
Q 017664 153 ELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVTLNTISDG---LIETSS------GETI 223 (368)
Q Consensus 153 e~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~---~v~~~~------g~~i 223 (368)
|+|..|.+ .+.+|+++++.+.+. .++.+...+.+.+++.||++++++.++++..+++ .+++.+ .+++
T Consensus 160 e~A~~l~~--~~~~Vtlv~~~~~~~--~~~~~~~~~~~~l~~~gV~i~~~~~v~~v~~~~~~~~~v~~~~~~~~~~~~~i 235 (321)
T PRK10262 160 EEALYLSN--IASEVHLIHRRDGFR--AEKILIKRLMDKVENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESL 235 (321)
T ss_pred HHHHHHHh--hCCEEEEEEECCccC--CCHHHHHHHHhhccCCCeEEEeCCEEEEEEcCCccEEEEEEEEcCCCCeEEEE
Confidence 99999985 478999999987652 3455778888899999999999999999876653 344432 2479
Q ss_pred ecCEEEEccCCCCCchhhhccccccccCCCCcEEeCC-----CeeecCCCCeEEecccCCCCccchHHHHHHHHHHHHHH
Q 017664 224 DTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDE-----NLRVRGFKNVFAIGDITDIPEIKQGYLAQKHALVTAKN 298 (368)
Q Consensus 224 ~~d~vi~a~G~~p~~~~~~~~~l~~~~~~~g~i~vd~-----~~~~~~~~~ifa~GD~~~~~~~~~~~~a~~~g~~aa~~ 298 (368)
++|.||+++|++|+.+++.. ++ .+ ++|++.||+ ++|| +.|+|||+|||+..+ .++...|+.+|..||..
T Consensus 236 ~~D~vv~a~G~~p~~~l~~~-~l--~~-~~g~i~vd~~~~~~~~~t-~~~~VyA~GD~~~~~-~~~~~~A~~~g~~Aa~~ 309 (321)
T PRK10262 236 DVAGLFVAIGHSPNTAIFEG-QL--EL-ENGYIKVQSGIHGNATQT-SIPGVFAAGDVMDHI-YRQAITSAGTGCMAALD 309 (321)
T ss_pred ECCEEEEEeCCccChhHhhc-cc--cc-cCCEEEECCCCccccccc-CCCCEEECeeccCCC-cceEEEEehhHHHHHHH
Confidence 99999999999999987654 34 33 468999998 5677 899999999999753 34556699999999999
Q ss_pred HHHHHcCC
Q 017664 299 LKKLMMGR 306 (368)
Q Consensus 299 i~~~l~g~ 306 (368)
|.++|.+-
T Consensus 310 ~~~~l~~~ 317 (321)
T PRK10262 310 AERYLDGL 317 (321)
T ss_pred HHHHHHhc
Confidence 99988653
No 47
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=100.00 E-value=2.9e-34 Score=272.15 Aligned_cols=274 Identities=20% Similarity=0.185 Sum_probs=188.3
Q ss_pred CCCCCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeecc-ceeeeecccccccceeeccccc--CceeEEEeEE
Q 017664 12 GLVEKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITWA-SLRAVVEPSFAVRSVINHGDYL--SNVKIVVSTA 87 (368)
Q Consensus 12 ~~~~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 87 (368)
...+.++|+|||||||||++|..|+ +|++|+|+|+++..++.+. .+... ....+......+.+ .+++++....
T Consensus 129 ~~~~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~GG~l~~gip~~---~~~~~~~~~~~~~l~~~gv~~~~~~~ 205 (449)
T TIGR01316 129 APSTHKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKPGGVVTYGIPEF---RLPKEIVVTEIKTLKKLGVTFRMNFL 205 (449)
T ss_pred CCCCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcEeeecCCCc---cCCHHHHHHHHHHHHhCCcEEEeCCc
Confidence 3456789999999999999999998 5999999999886653221 11100 01111111111111 2566665543
Q ss_pred EEeeccEEEecCCeEEEecEEEEecCC-CCCCC---CchHHHHHHHHHHHH---------------HHhcCCeEEEEcCc
Q 017664 88 VSITDTEVVTAGGQTFVYDYVVVATGH-VESVP---KSRTERLSQYEKDFE---------------KVKSANSVLIVGGG 148 (368)
Q Consensus 88 ~~~~~~~v~~~~g~~~~~d~lvlAtG~-~~~~p---~~~~~~~~~~~~~~~---------------~~~~~~~v~VvG~g 148 (368)
+ .+.+.+.+. ...||+||+|||+ .|..| +.+..++.+...... ....+++++|||+|
T Consensus 206 v---~~~v~~~~~-~~~yd~viiAtGa~~p~~~~ipG~~~~gv~~~~~~l~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG 281 (449)
T TIGR01316 206 V---GKTATLEEL-FSQYDAVFIGTGAGLPKLMNIPGEELCGVYSANDFLTRANLMKAYEFPHADTPVYAGKSVVVIGGG 281 (449)
T ss_pred c---CCcCCHHHH-HhhCCEEEEeCCCCCCCcCCCCCCCCCCcEEHHHHHHHHhhcccccccccCCcccCCCeEEEECCC
Confidence 3 223333332 3569999999998 46544 433222222221111 12346899999999
Q ss_pred hhHHHHHHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHcCCcEEEecceeeecccC-CC---eEEcC------
Q 017664 149 PTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVTLNTIS-DG---LIETS------ 218 (368)
Q Consensus 149 ~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~-~~---~v~~~------ 218 (368)
++|+|+|..+.+ .+.+|+++++.++. +........+.+++.||++++++.+.++..+ ++ .+.+.
T Consensus 282 ~~a~d~A~~l~~--~G~~Vtlv~~~~~~----~~~~~~~~~~~l~~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~ 355 (449)
T TIGR01316 282 NTAVDSARTALR--LGAEVHCLYRRTRE----DMTARVEEIAHAEEEGVKFHFLCQPVEIIGDEEGNVRAVKFRKMDCQE 355 (449)
T ss_pred HHHHHHHHHHHH--cCCEEEEEeecCcc----cCCCCHHHHHHHHhCCCEEEeccCcEEEEEcCCCeEEEEEEEEEEecC
Confidence 999999999884 57889999987652 1122234456788899999999999888653 23 22221
Q ss_pred ---CC-----------cEEecCEEEEccCCCCCchhhhccccccccCCCCcEEeCCCeeecCCCCeEEecccCCCCccch
Q 017664 219 ---SG-----------ETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITDIPEIKQ 284 (368)
Q Consensus 219 ---~g-----------~~i~~d~vi~a~G~~p~~~~~~~~~l~~~~~~~g~i~vd~~~~~~~~~~ifa~GD~~~~~~~~~ 284 (368)
+| +++++|.||+++|+.|+..++...++ .++++|++.||+++|| +.|+|||+|||+..+ .+
T Consensus 356 ~~~~g~~~~~~~~~~~~~i~~D~Vi~AiG~~p~~~~l~~~gl--~~~~~G~i~vd~~~~T-s~~~VfA~GD~~~g~--~~ 430 (449)
T TIGR01316 356 QIDSGERRFLPCGDAECKLEADAVIVAIGNGSNPIMAETTRL--KTSERGTIVVDEDQRT-SIPGVFAGGDIILGA--AT 430 (449)
T ss_pred cCCCCCeeeeecCCceEEEECCEEEECCCCCCCchhhhccCc--ccCCCCeEEeCCCCcc-CCCCEEEecCCCCCc--HH
Confidence 22 36999999999999999887766555 6678899999999998 899999999999654 37
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 017664 285 GYLAQKHALVTAKNLKKLM 303 (368)
Q Consensus 285 ~~~a~~~g~~aa~~i~~~l 303 (368)
...|+.+|+.||.+|.++|
T Consensus 431 v~~Ai~~G~~AA~~I~~~L 449 (449)
T TIGR01316 431 VIRAMGQGKRAAKSINEYL 449 (449)
T ss_pred HHHHHHHHHHHHHHHHhhC
Confidence 8899999999999998754
No 48
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.1e-34 Score=254.06 Aligned_cols=275 Identities=24% Similarity=0.288 Sum_probs=203.0
Q ss_pred CCCCcEEEECCChHHHHHHHHhhc-CCc-EEEEcCCCceeeeccceeeeec--ccccc-----cceeeccccc--CceeE
Q 017664 14 VEKKKVVVIGGGVGGSLLAYHIQS-FAD-VVLIDEKEYFEITWASLRAVVE--PSFAV-----RSVINHGDYL--SNVKI 82 (368)
Q Consensus 14 ~~~~~vvIIGaG~aGl~aA~~L~~-g~~-v~lie~~~~~~~~~~~~~~~~~--~~~~~-----~~~~~~~~~~--~~~~~ 82 (368)
++.+||+|||||||||+||.++.+ +.+ ++|+|+... ++.+.... .+. +.+.. .......++. -++++
T Consensus 1 ~~~~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~~~-gg~~~~~~-~venypg~~~~~~g~~L~~~~~~~a~~~~~~~ 78 (305)
T COG0492 1 MKIYDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGEP-GGQLTKTT-DVENYPGFPGGILGPELMEQMKEQAEKFGVEI 78 (305)
T ss_pred CceeeEEEECCCHHHHHHHHHHHHcCCCcEEEEecCCc-CCccccce-eecCCCCCccCCchHHHHHHHHHHHhhcCeEE
Confidence 357899999999999999999975 888 666666533 32111111 110 11111 1111111111 26677
Q ss_pred EEeEEEEeecc----EEEecCCeEEEecEEEEecCCCCCCCCchH------HHHHHHHHHHHHHhcCCeEEEEcCchhHH
Q 017664 83 VVSTAVSITDT----EVVTAGGQTFVYDYVVVATGHVESVPKSRT------ERLSQYEKDFEKVKSANSVLIVGGGPTGV 152 (368)
Q Consensus 83 ~~~~~~~~~~~----~v~~~~g~~~~~d~lvlAtG~~~~~p~~~~------~~~~~~~~~~~~~~~~~~v~VvG~g~~~~ 152 (368)
+...+..++.. .|.+.++. +++++||||||..+..|+.+. ..+..+..+.. ++++++++|+|+|++++
T Consensus 79 ~~~~v~~v~~~~~~F~v~t~~~~-~~ak~vIiAtG~~~~~~~~~~e~e~~g~gv~yc~~cdg-~~~~k~v~ViGgG~sAv 156 (305)
T COG0492 79 VEDEVEKVELEGGPFKVKTDKGT-YEAKAVIIATGAGARKLGVPGEEEFEGKGVSYCATCDG-FFKGKDVVVIGGGDSAV 156 (305)
T ss_pred EEEEEEEEeecCceEEEEECCCe-EEEeEEEECcCCcccCCCCCcchhhcCCceEEeeecCc-cccCCeEEEEcCCHHHH
Confidence 77777777643 56777776 999999999999966665431 22333344444 67789999999999999
Q ss_pred HHHHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHcC-CcEEEecceeeecccCC-CeEEcCC--C--cEEecC
Q 017664 153 ELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSK-KVEVILNQSVTLNTISD-GLIETSS--G--ETIDTD 226 (368)
Q Consensus 153 e~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~-gv~i~~~~~v~~i~~~~-~~v~~~~--g--~~i~~d 226 (368)
|.|..|.+ .+.+|++++|++.+- ....+.+.++++ +|++++++.+.++..++ ..+++.+ + +.+++|
T Consensus 157 e~Al~L~~--~a~~Vtlv~r~~~~r------a~~~~~~~l~~~~~i~~~~~~~i~ei~G~~v~~v~l~~~~~~~~~~~~~ 228 (305)
T COG0492 157 EEALYLSK--IAKKVTLVHRRDEFR------AEEILVERLKKNVKIEVLTNTVVKEILGDDVEGVVLKNVKGEEKELPVD 228 (305)
T ss_pred HHHHHHHH--hcCeEEEEecCcccC------cCHHHHHHHHhcCCeEEEeCCceeEEecCccceEEEEecCCceEEEEec
Confidence 99999995 477899999998863 255667777766 89999999999988765 3455444 3 378999
Q ss_pred EEEEccCCCCCchhhhccccccccCCCCcEEeCCCeeecCCCCeEEecccCCCCccchHHHHHHHHHHHHHHHHHHHcC
Q 017664 227 CHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITDIPEIKQGYLAQKHALVTAKNLKKLMMG 305 (368)
Q Consensus 227 ~vi~a~G~~p~~~~~~~~~l~~~~~~~g~i~vd~~~~~~~~~~ifa~GD~~~~~~~~~~~~a~~~g~~aa~~i~~~l~g 305 (368)
.++++.|..|+.+++..... ++++|+|.+|+.++| |.|+|||+||++..+. +++..|..+|..||.++.++|..
T Consensus 229 gvf~~iG~~p~~~~~~~~~~---~~~~g~I~v~~~~~T-svpGifAaGDv~~~~~-rqi~ta~~~G~~Aa~~a~~~l~~ 302 (305)
T COG0492 229 GVFIAIGHLPNTELLKGLGV---LDENGYIVVDEEMET-SVPGIFAAGDVADKNG-RQIATAAGDGAIAALSAERYLES 302 (305)
T ss_pred eEEEecCCCCchHHHhhccc---cCCCCcEEcCCCccc-CCCCEEEeEeeccCcc-cEEeehhhhHHHHHHHHHHHhhh
Confidence 99999999999998887654 688999999999999 8999999999998753 47889999999999999988754
No 49
>PRK12831 putative oxidoreductase; Provisional
Probab=100.00 E-value=7.9e-34 Score=269.61 Aligned_cols=279 Identities=19% Similarity=0.177 Sum_probs=188.3
Q ss_pred cCCCCCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeecc-ceeeeeccccccc-ceeeccccc--CceeEEEe
Q 017664 11 AGLVEKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITWA-SLRAVVEPSFAVR-SVINHGDYL--SNVKIVVS 85 (368)
Q Consensus 11 ~~~~~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~ 85 (368)
+...+.+||+|||||||||+||.+|+ +|++|+|+|+++..|+.+. .+... .++.+ ......+++ .++++...
T Consensus 135 ~~~~~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~---~l~~~~~~~~~~~~~~~~gv~i~~~ 211 (464)
T PRK12831 135 TEEKKGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGGVLVYGIPEF---RLPKETVVKKEIENIKKLGVKIETN 211 (464)
T ss_pred CcCCCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCCeeeecCCCc---cCCccHHHHHHHHHHHHcCCEEEcC
Confidence 44556789999999999999999998 4999999999887653321 11110 11111 111111111 14555544
Q ss_pred EEEEeeccEEEecCC-eEEEecEEEEecCC-CCCC---CCchHHHHHHHHHHHHH--------------HhcCCeEEEEc
Q 017664 86 TAVSITDTEVVTAGG-QTFVYDYVVVATGH-VESV---PKSRTERLSQYEKDFEK--------------VKSANSVLIVG 146 (368)
Q Consensus 86 ~~~~~~~~~v~~~~g-~~~~~d~lvlAtG~-~~~~---p~~~~~~~~~~~~~~~~--------------~~~~~~v~VvG 146 (368)
..+. +.+...+. ..+.||+||||||+ .|.. |+.+..++.+...+... ...+++|+|||
T Consensus 212 ~~v~---~~v~~~~~~~~~~~d~viiAtGa~~~~~l~ipG~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIG 288 (464)
T PRK12831 212 VVVG---KTVTIDELLEEEGFDAVFIGSGAGLPKFMGIPGENLNGVFSANEFLTRVNLMKAYKPEYDTPIKVGKKVAVVG 288 (464)
T ss_pred CEEC---CcCCHHHHHhccCCCEEEEeCCCCCCCCCCCCCcCCcCcEEHHHHHHHHHhcccccccccCcccCCCeEEEEC
Confidence 4221 22222222 23569999999998 4554 44333333222222211 23579999999
Q ss_pred CchhHHHHHHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHcCCcEEEecceeeecccC-CC---eEEcC----
Q 017664 147 GGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVTLNTIS-DG---LIETS---- 218 (368)
Q Consensus 147 ~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~-~~---~v~~~---- 218 (368)
+|++|+|+|..+.+ .+.+|+++++.... .++.. ... .+.+++.||++++++.+.++..+ ++ .+++.
T Consensus 289 gG~va~d~A~~l~r--~Ga~Vtlv~r~~~~--~m~a~-~~e-~~~a~~eGV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~ 362 (464)
T PRK12831 289 GGNVAMDAARTALR--LGAEVHIVYRRSEE--ELPAR-VEE-VHHAKEEGVIFDLLTNPVEILGDENGWVKGMKCIKMEL 362 (464)
T ss_pred CcHHHHHHHHHHHH--cCCEEEEEeecCcc--cCCCC-HHH-HHHHHHcCCEEEecccceEEEecCCCeEEEEEEEEEEe
Confidence 99999999999885 47789999986531 12211 122 23467789999999998888653 33 12221
Q ss_pred --------------CC--cEEecCEEEEccCCCCCchhhhc-cccccccCCCCcEEeCCC-eeecCCCCeEEecccCCCC
Q 017664 219 --------------SG--ETIDTDCHFMCTGKAMASSWLRE-TILKDSLDGRGRLMVDEN-LRVRGFKNVFAIGDITDIP 280 (368)
Q Consensus 219 --------------~g--~~i~~d~vi~a~G~~p~~~~~~~-~~l~~~~~~~g~i~vd~~-~~~~~~~~ifa~GD~~~~~ 280 (368)
+| .++++|.||+|+|+.|+..++.. .++ .++++|++.||++ ++| +.|+|||+|||+..+
T Consensus 363 ~~~d~~Gr~~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~~~~~gl--~~~~~G~i~vd~~~~~T-s~pgVfAaGD~~~g~ 439 (464)
T PRK12831 363 GEPDASGRRRPVEIEGSEFVLEVDTVIMSLGTSPNPLISSTTKGL--KINKRGCIVADEETGLT-SKEGVFAGGDAVTGA 439 (464)
T ss_pred cCcCCCCCccceecCCceEEEECCEEEECCCCCCChhhhcccCCc--eECCCCcEEECCCCCcc-CCCCEEEeCCCCCCc
Confidence 22 26999999999999999877765 344 5677899999998 888 899999999998754
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHcCC
Q 017664 281 EIKQGYLAQKHALVTAKNLKKLMMGR 306 (368)
Q Consensus 281 ~~~~~~~a~~~g~~aa~~i~~~l~g~ 306 (368)
. +...|+.+|+.||.+|.++|.++
T Consensus 440 ~--~v~~Ai~~G~~AA~~I~~~L~~~ 463 (464)
T PRK12831 440 A--TVILAMGAGKKAAKAIDEYLSKK 463 (464)
T ss_pred h--HHHHHHHHHHHHHHHHHHHhcCC
Confidence 3 78899999999999999998764
No 50
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=100.00 E-value=2.6e-33 Score=271.95 Aligned_cols=280 Identities=20% Similarity=0.238 Sum_probs=193.9
Q ss_pred CCCCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeeccceee---eecc-ccc-ccceeeccccc--CceeEEE
Q 017664 13 LVEKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITWASLRA---VVEP-SFA-VRSVINHGDYL--SNVKIVV 84 (368)
Q Consensus 13 ~~~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~~~~~~---~~~~-~~~-~~~~~~~~~~~--~~~~~~~ 84 (368)
|.+.+||+|||||||||+||.+|+ +|++|+|+|+++ +++....... .... ... ........+.. .+++++.
T Consensus 1 m~~~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~~-~GG~~~~~~~i~~~pg~~~~~~~~l~~~l~~~~~~~gv~~~~ 79 (555)
T TIGR03143 1 MEEIYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKDD-FGGQITITSEVVNYPGILNTTGPELMQEMRQQAQDFGVKFLQ 79 (555)
T ss_pred CCCcCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC-CCceEEeccccccCCCCcCCCHHHHHHHHHHHHHHcCCEEec
Confidence 455799999999999999999997 599999999975 4432211110 0000 000 00001111111 1567777
Q ss_pred eEEEEeecc----EEEecCCeEEEecEEEEecCCCCCCCCchHHHHH------HHHHHHHHHhcCCeEEEEcCchhHHHH
Q 017664 85 STAVSITDT----EVVTAGGQTFVYDYVVVATGHVESVPKSRTERLS------QYEKDFEKVKSANSVLIVGGGPTGVEL 154 (368)
Q Consensus 85 ~~~~~~~~~----~v~~~~g~~~~~d~lvlAtG~~~~~p~~~~~~~~------~~~~~~~~~~~~~~v~VvG~g~~~~e~ 154 (368)
..+..++.. .+.+.++ .+.+++||+|||+.|..|++++.... .+.........+++++|||+|++|+|+
T Consensus 80 ~~V~~i~~~~~~~~V~~~~g-~~~a~~lVlATGa~p~~~~ipG~~~~~~~~v~~~~~~~~~~~~g~~VvVIGgG~~g~E~ 158 (555)
T TIGR03143 80 AEVLDVDFDGDIKTIKTARG-DYKTLAVLIATGASPRKLGFPGEEEFTGRGVAYCATCDGEFFTGMDVFVIGGGFAAAEE 158 (555)
T ss_pred cEEEEEEecCCEEEEEecCC-EEEEeEEEECCCCccCCCCCCCHHHhCCceEEEEeecChhhcCCCEEEEECCCHHHHHH
Confidence 777777642 3555444 58899999999999877766543211 111112233468999999999999999
Q ss_pred HHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHcCCcEEEecceeeecccCCC--eEE---cCCCcEE----ec
Q 017664 155 AGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVTLNTISDG--LIE---TSSGETI----DT 225 (368)
Q Consensus 155 a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~--~v~---~~~g~~i----~~ 225 (368)
|..|.+ .+.+|+++++.+.+.. . .....+.++..||++++++.|.++..++. .+. ..+|++. ++
T Consensus 159 A~~L~~--~g~~Vtli~~~~~~~~--~---~~~~~~~~~~~gV~i~~~~~V~~i~~~~~v~~v~~~~~~~G~~~~~~~~~ 231 (555)
T TIGR03143 159 AVFLTR--YASKVTVIVREPDFTC--A---KLIAEKVKNHPKIEVKFNTELKEATGDDGLRYAKFVNNVTGEITEYKAPK 231 (555)
T ss_pred HHHHHc--cCCEEEEEEeCCcccc--C---HHHHHHHHhCCCcEEEeCCEEEEEEcCCcEEEEEEEECCCCCEEEEeccc
Confidence 999874 5889999999876521 1 12223334567999999999998875543 222 3456533 36
Q ss_pred CE----EEEccCCCCCchhhhccccccccCCCCcEEeCCCeeecCCCCeEEecccCCCCccchHHHHHHHHHHHHHHHHH
Q 017664 226 DC----HFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITDIPEIKQGYLAQKHALVTAKNLKK 301 (368)
Q Consensus 226 d~----vi~a~G~~p~~~~~~~~~l~~~~~~~g~i~vd~~~~~~~~~~ifa~GD~~~~~~~~~~~~a~~~g~~aa~~i~~ 301 (368)
|. +++++|++|+.+++.. .+ .++++|++.||+++|| +.|||||+|||+... +.....|..||+.||.+|.+
T Consensus 232 D~~~~~Vi~a~G~~Pn~~l~~~-~l--~l~~~G~I~vd~~~~T-s~p~IyAaGDv~~~~-~~~v~~A~~~G~~Aa~~i~~ 306 (555)
T TIGR03143 232 DAGTFGVFVFVGYAPSSELFKG-VV--ELDKRGYIPTNEDMET-NVPGVYAAGDLRPKE-LRQVVTAVADGAIAATSAER 306 (555)
T ss_pred cccceEEEEEeCCCCChhHHhh-hc--ccCCCCeEEeCCcccc-CCCCEEEceeccCCC-cchheeHHhhHHHHHHHHHH
Confidence 76 9999999999988765 33 6778899999999999 899999999998542 33567899999999999999
Q ss_pred HHcCC
Q 017664 302 LMMGR 306 (368)
Q Consensus 302 ~l~g~ 306 (368)
+|.+.
T Consensus 307 ~l~~~ 311 (555)
T TIGR03143 307 YVKEL 311 (555)
T ss_pred HHHhh
Confidence 88654
No 51
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=100.00 E-value=3.3e-33 Score=257.74 Aligned_cols=286 Identities=20% Similarity=0.168 Sum_probs=193.1
Q ss_pred eeccCCcCCCCCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeeccc-eeeeeccccccccee-eccccc-Cce
Q 017664 5 LWGSTAAGLVEKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITWAS-LRAVVEPSFAVRSVI-NHGDYL-SNV 80 (368)
Q Consensus 5 ~~~~~~~~~~~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~-~~~ 80 (368)
.|+++.+.+...++|+|||+|++|+++|..|+ +|++|+++|+.+.++..+.. .... ....+... ....+. .++
T Consensus 7 ~~~~~~~~~~~~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~~~~~~---~~~~~~~~~~~~~l~~~~i 83 (352)
T PRK12770 7 AFMCKEKPPPTGKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPGGLMLFGIPEF---RIPIERVREGVKELEEAGV 83 (352)
T ss_pred hhhcccCCCCCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceeeecCccc---ccCHHHHHHHHHHHHhCCe
Confidence 67887777777889999999999999999997 59999999999876533211 1100 00001000 001111 145
Q ss_pred eEEEeEEEEee-c------c-----EEEecCCeEEEecEEEEecCCC-CCC---CCchHHHHHHHHHHHHH---------
Q 017664 81 KIVVSTAVSIT-D------T-----EVVTAGGQTFVYDYVVVATGHV-ESV---PKSRTERLSQYEKDFEK--------- 135 (368)
Q Consensus 81 ~~~~~~~~~~~-~------~-----~v~~~~g~~~~~d~lvlAtG~~-~~~---p~~~~~~~~~~~~~~~~--------- 135 (368)
++.....+..+ . . .+.. ++..+.||+||||||+. |.. |+.+...+.+.......
T Consensus 84 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~lviAtGs~~~~~~~ipg~~~~~v~~~~~~~~~~~~~~~~~~ 162 (352)
T PRK12770 84 VFHTRTKVCCGEPLHEEEGDEFVERIVSL-EELVKKYDAVLIATGTWKSRKLGIPGEDLPGVYSALEYLFRIRAAKLGYL 162 (352)
T ss_pred EEecCcEEeeccccccccccccccccCCH-HHHHhhCCEEEEEeCCCCCCcCCCCCccccCceeHHHHHHHhhhcccccc
Confidence 55444333211 1 0 1111 12246899999999994 544 44332222222111110
Q ss_pred ------HhcCCeEEEEcCchhHHHHHHHHhhhCCCCe-EEEEecCcccccccCchhHHHHHHHHHcCCcEEEecceeeec
Q 017664 136 ------VKSANSVLIVGGGPTGVELAGEIAVDFPDKK-VILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVTLN 208 (368)
Q Consensus 136 ------~~~~~~v~VvG~g~~~~e~a~~l~~~~~~~~-v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i 208 (368)
...+++++|+|+|++|+|+|..+.+ .+.+ |+++++.+... ........+.|+++||++++++.+.++
T Consensus 163 ~~~~~~~~~g~~vvViG~G~~g~e~A~~l~~--~g~~~Vtvi~~~~~~~----~~~~~~~~~~l~~~gi~i~~~~~v~~i 236 (352)
T PRK12770 163 PWEKVPPVEGKKVVVVGAGLTAVDAALEAVL--LGAEKVYLAYRRTINE----APAGKYEIERLIARGVEFLELVTPVRI 236 (352)
T ss_pred ccccccccCCCEEEEECCCHHHHHHHHHHHH--cCCCeEEEEeecchhh----CCCCHHHHHHHHHcCCEEeeccCceee
Confidence 1125899999999999999999875 3554 99998765421 122244566799999999999998888
Q ss_pred ccCCC--eEE--------------------cCCCcEEecCEEEEccCCCCCchhhhc-cccccccCCCCcEEeCCCeeec
Q 017664 209 TISDG--LIE--------------------TSSGETIDTDCHFMCTGKAMASSWLRE-TILKDSLDGRGRLMVDENLRVR 265 (368)
Q Consensus 209 ~~~~~--~v~--------------------~~~g~~i~~d~vi~a~G~~p~~~~~~~-~~l~~~~~~~g~i~vd~~~~~~ 265 (368)
+.++. .++ ..+++++++|.+|+++|++|+..+..+ .++ .++++|++.||+++++
T Consensus 237 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~D~vi~a~G~~p~~~l~~~~~g~--~~~~~g~i~vd~~~~t- 313 (352)
T PRK12770 237 IGEGRVEGVELAKMRLGEPDESGRPRPVPIPGSEFVLEADTVVFAIGEIPTPPFAKECLGI--ELNRKGEIVVDEKHMT- 313 (352)
T ss_pred ecCCcEeEEEEEEEEecCcCcccCcCceecCCCeEEEECCEEEECcccCCCchhhhcccCc--eecCCCcEeeCCCccc-
Confidence 75543 222 123358999999999999999877655 333 5677899999999998
Q ss_pred CCCCeEEecccCCCCccchHHHHHHHHHHHHHHHHHHHcC
Q 017664 266 GFKNVFAIGDITDIPEIKQGYLAQKHALVTAKNLKKLMMG 305 (368)
Q Consensus 266 ~~~~ifa~GD~~~~~~~~~~~~a~~~g~~aa~~i~~~l~g 305 (368)
+.|+||++|||+..+. .+..|++||+.||.+|.+.|.+
T Consensus 314 ~~~~vyaiGD~~~~~~--~~~~A~~~g~~aa~~i~~~l~~ 351 (352)
T PRK12770 314 SREGVFAAGDVVTGPS--KIGKAIKSGLRAAQSIHEWLDL 351 (352)
T ss_pred CCCCEEEEcccccCcc--hHHHHHHHHHHHHHHHHHHHhc
Confidence 7999999999997543 7889999999999999998864
No 52
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=100.00 E-value=1e-33 Score=272.92 Aligned_cols=276 Identities=21% Similarity=0.291 Sum_probs=195.2
Q ss_pred CCCCcEEEECCChHHHHHHHHhhc-CCcEEEEcCCCceeeeccc---eeeeeccc-ccc-cceeeccccc--CceeEEE-
Q 017664 14 VEKKKVVVIGGGVGGSLLAYHIQS-FADVVLIDEKEYFEITWAS---LRAVVEPS-FAV-RSVINHGDYL--SNVKIVV- 84 (368)
Q Consensus 14 ~~~~~vvIIGaG~aGl~aA~~L~~-g~~v~lie~~~~~~~~~~~---~~~~~~~~-~~~-~~~~~~~~~~--~~~~~~~- 84 (368)
...+||+||||||||++||.+|++ |++|+|+++. +|+.+.. +....... ... +......+++ .++++..
T Consensus 210 ~~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~~--~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~gv~i~~~ 287 (515)
T TIGR03140 210 LDPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAER--IGGQVKDTVGIENLISVPYTTGSQLAANLEEHIKQYPIDLMEN 287 (515)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC--CCCccccCcCcccccccCCCCHHHHHHHHHHHHHHhCCeEEcC
Confidence 446899999999999999999985 9999999853 4433211 10110000 000 0000111111 1456544
Q ss_pred eEEEEeecc----EEEecCCeEEEecEEEEecCCCCCCCCchHHHH------HHHHHHHHHHhcCCeEEEEcCchhHHHH
Q 017664 85 STAVSITDT----EVVTAGGQTFVYDYVVVATGHVESVPKSRTERL------SQYEKDFEKVKSANSVLIVGGGPTGVEL 154 (368)
Q Consensus 85 ~~~~~~~~~----~v~~~~g~~~~~d~lvlAtG~~~~~p~~~~~~~------~~~~~~~~~~~~~~~v~VvG~g~~~~e~ 154 (368)
.++..++.. .+.+.++..+.||++|+|||+.|..|++++..- ............+++++|||+|++|+|+
T Consensus 288 ~~V~~I~~~~~~~~v~~~~g~~i~~d~lIlAtGa~~~~~~ipG~~~~~~~~v~~~~~~~~~~~~~k~VvViGgG~~g~E~ 367 (515)
T TIGR03140 288 QRAKKIETEDGLIVVTLESGEVLKAKSVIVATGARWRKLGVPGEKEYIGKGVAYCPHCDGPFFKGKDVAVIGGGNSGIEA 367 (515)
T ss_pred CEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCCcCCCCCCCHHHcCCCeEEEeeccChhhcCCCEEEEECCcHHHHHH
Confidence 356655432 566667888999999999999976665543211 0011111223457899999999999999
Q ss_pred HHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHc-CCcEEEecceeeecccCCC---eEEcCC---C--cEEec
Q 017664 155 AGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTS-KKVEVILNQSVTLNTISDG---LIETSS---G--ETIDT 225 (368)
Q Consensus 155 a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~-~gv~i~~~~~v~~i~~~~~---~v~~~~---g--~~i~~ 225 (368)
|..|+. .+.+|+++++.+.+. ....+.+.+++ .||++++++.+.+++.+++ .+.+.+ + +++++
T Consensus 368 A~~L~~--~g~~Vtli~~~~~l~------~~~~l~~~l~~~~gV~i~~~~~v~~i~~~~~~v~~v~~~~~~~~~~~~i~~ 439 (515)
T TIGR03140 368 AIDLAG--IVRHVTVLEFADELK------ADKVLQDKLKSLPNVDILTSAQTTEIVGDGDKVTGIRYQDRNSGEEKQLDL 439 (515)
T ss_pred HHHHHh--cCcEEEEEEeCCcCC------hhHHHHHHHhcCCCCEEEECCeeEEEEcCCCEEEEEEEEECCCCcEEEEEc
Confidence 999984 578999999877653 23456677776 6999999999998876644 354432 2 47999
Q ss_pred CEEEEccCCCCCchhhhccccccccCCCCcEEeCCCeeecCCCCeEEecccCCCCccchHHHHHHHHHHHHHHHHHHHc
Q 017664 226 DCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITDIPEIKQGYLAQKHALVTAKNLKKLMM 304 (368)
Q Consensus 226 d~vi~a~G~~p~~~~~~~~~l~~~~~~~g~i~vd~~~~~~~~~~ifa~GD~~~~~~~~~~~~a~~~g~~aa~~i~~~l~ 304 (368)
|.+++++|.+|+++++... + .++++|+|.||+++|| +.|||||+|||+..+. ++...|+.+|..||.+|.++|.
T Consensus 440 D~vi~a~G~~Pn~~~l~~~-~--~~~~~G~I~vd~~~~T-s~p~IyAaGDv~~~~~-~~~~~A~~~G~~Aa~~i~~~~~ 513 (515)
T TIGR03140 440 DGVFVQIGLVPNTEWLKDA-V--ELNRRGEIVIDERGRT-SVPGIFAAGDVTTVPY-KQIIIAMGEGAKAALSAFDYLI 513 (515)
T ss_pred CEEEEEeCCcCCchHHhhh-c--ccCCCCeEEECCCCCC-CCCCEEEcccccCCcc-ceEEEEEccHHHHHHHHHHHHh
Confidence 9999999999999988754 3 6677899999999998 8999999999998643 3567899999999999998764
No 53
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=100.00 E-value=2e-32 Score=246.47 Aligned_cols=277 Identities=23% Similarity=0.384 Sum_probs=219.2
Q ss_pred CCcEEEECCChHHHHHHHHhhc---CCcEEEEcCCCceeeeccceeeee---cccccccceeecccccCceeEEE-eEEE
Q 017664 16 KKKVVVIGGGVGGSLLAYHIQS---FADVVLIDEKEYFEITWASLRAVV---EPSFAVRSVINHGDYLSNVKIVV-STAV 88 (368)
Q Consensus 16 ~~~vvIIGaG~aGl~aA~~L~~---g~~v~lie~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 88 (368)
...++|||+|++|..|+..++. -.+++++-++.++.+....+.... ...+..+....++++ +++++. ..++
T Consensus 74 ar~fvivGgG~~g~vaie~~r~~g~~~ri~l~~~~~~~pydr~~Ls~~~~~~~~~~a~r~~e~Yke~--gIe~~~~t~v~ 151 (478)
T KOG1336|consen 74 ARHFVIVGGGPGGAVAIETLRQVGFTERIALVKREYLLPYDRARLSKFLLTVGEGLAKRTPEFYKEK--GIELILGTSVV 151 (478)
T ss_pred cceEEEEcCCchhhhhHhhHHhhCCCcceEEEeccccCcccchhcccceeeccccccccChhhHhhc--CceEEEcceeE
Confidence 5789999999999999999984 468999998888877765544332 333322222223332 566543 3455
Q ss_pred Ee--eccEEEecCCeEEEecEEEEecCCC---CCCCCchHH------HHHHHHHHHHHHhcCCeEEEEcCchhHHHHHHH
Q 017664 89 SI--TDTEVVTAGGQTFVYDYVVVATGHV---ESVPKSRTE------RLSQYEKDFEKVKSANSVLIVGGGPTGVELAGE 157 (368)
Q Consensus 89 ~~--~~~~v~~~~g~~~~~d~lvlAtG~~---~~~p~~~~~------~~~~~~~~~~~~~~~~~v~VvG~g~~~~e~a~~ 157 (368)
.+ ..+++++.+|+.++|++|+||||+. +.+|+...+ .+.+...........++++++|+|.+|+|+|..
T Consensus 152 ~~D~~~K~l~~~~Ge~~kys~LilATGs~~~~l~~pG~~~~nv~~ireieda~~l~~~~~~~~~vV~vG~G~ig~Evaa~ 231 (478)
T KOG1336|consen 152 KADLASKTLVLGNGETLKYSKLIIATGSSAKTLDIPGVELKNVFYLREIEDANRLVAAIQLGGKVVCVGGGFIGMEVAAA 231 (478)
T ss_pred EeeccccEEEeCCCceeecceEEEeecCccccCCCCCccccceeeeccHHHHHHHHHHhccCceEEEECchHHHHHHHHH
Confidence 44 4679999999999999999999996 555654433 345555555556668899999999999999999
Q ss_pred HhhhCCCCeEEEEecCccccc-ccCchhHHHHHHHHHcCCcEEEecceeeecccCC-C---eEEcCCCcEEecCEEEEcc
Q 017664 158 IAVDFPDKKVILVHRGPKLLE-FVGSRASQIALDWLTSKKVEVILNQSVTLNTISD-G---LIETSSGETIDTDCHFMCT 232 (368)
Q Consensus 158 l~~~~~~~~v~~i~~~~~~l~-~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~-~---~v~~~~g~~i~~d~vi~a~ 232 (368)
|.. .+.+|+++++.+..++ .+.+.+.+.++++++++||++++++.+.+++.+. + .|.+.+|+++++|.+++.+
T Consensus 232 l~~--~~~~VT~V~~e~~~~~~lf~~~i~~~~~~y~e~kgVk~~~~t~~s~l~~~~~Gev~~V~l~dg~~l~adlvv~Gi 309 (478)
T KOG1336|consen 232 LVS--KAKSVTVVFPEPWLLPRLFGPSIGQFYEDYYENKGVKFYLGTVVSSLEGNSDGEVSEVKLKDGKTLEADLVVVGI 309 (478)
T ss_pred HHh--cCceEEEEccCccchhhhhhHHHHHHHHHHHHhcCeEEEEecceeecccCCCCcEEEEEeccCCEeccCeEEEee
Confidence 985 4889999999998887 6778899999999999999999999999888765 3 6889999999999999999
Q ss_pred CCCCCchhhhccccccccCCCCcEEeCCCeeecCCCCeEEecccCCCCccc--------hHHHHHHHHHHHHHHHH
Q 017664 233 GKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITDIPEIK--------QGYLAQKHALVTAKNLK 300 (368)
Q Consensus 233 G~~p~~~~~~~~~l~~~~~~~g~i~vd~~~~~~~~~~ifa~GD~~~~~~~~--------~~~~a~~~g~~aa~~i~ 300 (368)
|.+|++++++. +. ..+++|+|.||++||+ +.|||||+||++..|.+. -...|+.+|+.+...|.
T Consensus 310 G~~p~t~~~~~-g~--~~~~~G~i~V~~~f~t-~~~~VyAiGDva~fp~~~~~~~~~v~H~~~A~~~g~~av~ai~ 381 (478)
T KOG1336|consen 310 GIKPNTSFLEK-GI--LLDSKGGIKVDEFFQT-SVPNVYAIGDVATFPLKGYGEDRRVEHVDHARASGRQAVKAIK 381 (478)
T ss_pred ccccccccccc-cc--eecccCCEeehhceee-ccCCcccccceeecccccccccccchHHHHHHHHHHhhhhhhh
Confidence 99999999886 32 5688999999999999 799999999999887532 23467788887776665
No 54
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=100.00 E-value=1.7e-32 Score=273.30 Aligned_cols=272 Identities=22% Similarity=0.232 Sum_probs=186.8
Q ss_pred CCCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeeccceeeeecc-cccccceeeccccc--CceeEEEeEEEE
Q 017664 14 VEKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITWASLRAVVEP-SFAVRSVINHGDYL--SNVKIVVSTAVS 89 (368)
Q Consensus 14 ~~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~~ 89 (368)
.+.++|+||||||||++||++|+ +|++|+|+|+++..|+... ..+.. .++.+.+....+++ .++++..+..+.
T Consensus 537 ~tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG~lr---~~IP~~Rlp~evL~~die~l~~~GVe~~~gt~Vd 613 (1019)
T PRK09853 537 GSRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGVVK---NIIPQFRIPAELIQHDIEFVKAHGVKFEFGCSPD 613 (1019)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccCccee---eecccccccHHHHHHHHHHHHHcCCEEEeCceeE
Confidence 45789999999999999999998 5999999999988764322 11110 11111111111111 156665554332
Q ss_pred eeccEEEecCCeEEEecEEEEecCCCC-CCCCchHH--HHHHHHHH-------HHHHhcCCeEEEEcCchhHHHHHHHHh
Q 017664 90 ITDTEVVTAGGQTFVYDYVVVATGHVE-SVPKSRTE--RLSQYEKD-------FEKVKSANSVLIVGGGPTGVELAGEIA 159 (368)
Q Consensus 90 ~~~~~v~~~~g~~~~~d~lvlAtG~~~-~~p~~~~~--~~~~~~~~-------~~~~~~~~~v~VvG~g~~~~e~a~~l~ 159 (368)
+...+.+...||+||||||+.+ ..+++++. .+.+.... ......+++|+|||+|++|+|+|..+.
T Consensus 614 -----i~le~L~~~gYDaVILATGA~~~~~l~IpG~~~gV~saldfL~~~k~~~~~~~~GKrVVVIGGGnVAmD~Ar~a~ 688 (1019)
T PRK09853 614 -----LTVEQLKNEGYDYVVVAIGADKNGGLKLEGGNQNVIKALPFLEEYKNKGTALKLGKHVVVVGGGNTAMDAARAAL 688 (1019)
T ss_pred -----EEhhhheeccCCEEEECcCCCCCCCCCCCCccCCceehHHHHHHHhhhcccccCCCEEEEECCChHHHHHHHHHH
Confidence 2233445567999999999983 32232211 12111111 122345899999999999999998877
Q ss_pred hhCCC-CeEEEEecCcc-cccccCchhHHHHHHHHHcCCcEEEecceeeecccCCC------------------eEEcCC
Q 017664 160 VDFPD-KKVILVHRGPK-LLEFVGSRASQIALDWLTSKKVEVILNQSVTLNTISDG------------------LIETSS 219 (368)
Q Consensus 160 ~~~~~-~~v~~i~~~~~-~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~------------------~v~~~~ 219 (368)
+ ..+ .+|++++|++. .++. ....+.+.+ +.||++++++.+.++..++. .+.+.+
T Consensus 689 R-lgGakeVTLVyRr~~~~MPA----~~eEle~Al-eeGVe~~~~~~p~~I~~dG~l~~~~~~lg~~d~~Gr~~~v~tg~ 762 (1019)
T PRK09853 689 R-VPGVEKVTVVYRRTKQEMPA----WREEYEEAL-EDGVEFKELLNPESFDADGTLTCRVMKLGEPDESGRRRPVETGE 762 (1019)
T ss_pred h-cCCCceEEEEEccCcccccc----cHHHHHHHH-HcCCEEEeCCceEEEEcCCcEEEEEEEeecccCCCceEEeeCCC
Confidence 4 334 58999998763 3332 233344443 46999999988887753221 122334
Q ss_pred CcEEecCEEEEccCCCCCchhhhccccccccCCCCcEEeCCCeeecCCCCeEEecccCCCCccchHHHHHHHHHHHHHHH
Q 017664 220 GETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITDIPEIKQGYLAQKHALVTAKNL 299 (368)
Q Consensus 220 g~~i~~d~vi~a~G~~p~~~~~~~~~l~~~~~~~g~i~vd~~~~~~~~~~ifa~GD~~~~~~~~~~~~a~~~g~~aa~~i 299 (368)
++++++|.||+|+|..|+.+++...++ .++++|++.||+++|| +.|+|||+|||+..|. ++..|+.+|+.||++|
T Consensus 763 ~~~I~aD~VIvAIG~~Pntelle~~GL--~ld~~G~I~VDetlqT-s~pgVFAaGD~a~Gp~--tvv~Ai~qGr~AA~nI 837 (1019)
T PRK09853 763 TVTLEADTVITAIGEQVDTELLKANGI--PLDKKGWPVVDANGET-SLTNVYMIGDVQRGPS--TIVAAIADARRAADAI 837 (1019)
T ss_pred eEEEEeCEEEECCCCcCChhHHHhcCc--cccCCCCEEeCCCccc-CCCCEEEEeccccCch--HHHHHHHHHHHHHHHH
Confidence 468999999999999999998876655 5677899999999998 8999999999997554 7889999999999999
Q ss_pred HHHHc
Q 017664 300 KKLMM 304 (368)
Q Consensus 300 ~~~l~ 304 (368)
.+.+.
T Consensus 838 ~~~~~ 842 (1019)
T PRK09853 838 LSREG 842 (1019)
T ss_pred hhhcC
Confidence 98664
No 55
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=100.00 E-value=1.1e-32 Score=262.70 Aligned_cols=278 Identities=20% Similarity=0.191 Sum_probs=188.2
Q ss_pred CCCCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeeccc-eeeeecccccccceeeccccc--CceeEEEeEEE
Q 017664 13 LVEKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITWAS-LRAVVEPSFAVRSVINHGDYL--SNVKIVVSTAV 88 (368)
Q Consensus 13 ~~~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 88 (368)
..+.++|+|||||||||++|..|+ +|++|+|+|+++.++..+.. .... ....+......+++ .++++.....+
T Consensus 137 ~~~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~gG~l~~gip~~---~~~~~~~~~~~~~l~~~gv~~~~~~~v 213 (457)
T PRK11749 137 PKTGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGGLLRYGIPEF---RLPKDIVDREVERLLKLGVEIRTNTEV 213 (457)
T ss_pred ccCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCcEeeccCCCc---cCCHHHHHHHHHHHHHcCCEEEeCCEE
Confidence 345689999999999999999998 59999999999876533211 1000 00111111111111 14555544432
Q ss_pred EeeccEEEecCCeEEEecEEEEecCCC-CCC---CCchHHHHHHHHHHHHH---------HhcCCeEEEEcCchhHHHHH
Q 017664 89 SITDTEVVTAGGQTFVYDYVVVATGHV-ESV---PKSRTERLSQYEKDFEK---------VKSANSVLIVGGGPTGVELA 155 (368)
Q Consensus 89 ~~~~~~v~~~~g~~~~~d~lvlAtG~~-~~~---p~~~~~~~~~~~~~~~~---------~~~~~~v~VvG~g~~~~e~a 155 (368)
. ..+.+.+. .+.||+||+|||+. |.. |+.+..++.+....... ...+++++|||+|++|+|+|
T Consensus 214 ~---~~v~~~~~-~~~~d~vvlAtGa~~~~~~~i~G~~~~gv~~~~~~l~~~~~~~~~~~~~~g~~VvViGgG~~g~e~A 289 (457)
T PRK11749 214 G---RDITLDEL-RAGYDAVFIGTGAGLPRFLGIPGENLGGVYSAVDFLTRVNQAVADYDLPVGKRVVVIGGGNTAMDAA 289 (457)
T ss_pred C---CccCHHHH-HhhCCEEEEccCCCCCCCCCCCCccCCCcEEHHHHHHHHhhccccccCCCCCeEEEECCCHHHHHHH
Confidence 1 12222222 27899999999996 443 44332222222221111 23579999999999999999
Q ss_pred HHHhhhCCCCeEEEEecCccc-ccccCchhHHHHHHHHHcCCcEEEecceeeecccCCC---eEEc--------------
Q 017664 156 GEIAVDFPDKKVILVHRGPKL-LEFVGSRASQIALDWLTSKKVEVILNQSVTLNTISDG---LIET-------------- 217 (368)
Q Consensus 156 ~~l~~~~~~~~v~~i~~~~~~-l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~---~v~~-------------- 217 (368)
..+.+ ....+|+++++.... ++. .....+.+++.||++++++.+.++..+++ .+.+
T Consensus 290 ~~l~~-~G~~~Vtlv~~~~~~~~~~-----~~~~~~~~~~~GV~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~~g~~ 363 (457)
T PRK11749 290 RTAKR-LGAESVTIVYRRGREEMPA-----SEEEVEHAKEEGVEFEWLAAPVEILGDEGRVTGVEFVRMELGEPDASGRR 363 (457)
T ss_pred HHHHH-cCCCeEEEeeecCcccCCC-----CHHHHHHHHHCCCEEEecCCcEEEEecCCceEEEEEEEEEecCcCCCCCc
Confidence 99874 233489999986542 221 22345678889999999999988875543 2332
Q ss_pred -----CCCcEEecCEEEEccCCCCCchhhhccccccccCCCCcEEeCC-CeeecCCCCeEEecccCCCCccchHHHHHHH
Q 017664 218 -----SSGETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDE-NLRVRGFKNVFAIGDITDIPEIKQGYLAQKH 291 (368)
Q Consensus 218 -----~~g~~i~~d~vi~a~G~~p~~~~~~~~~l~~~~~~~g~i~vd~-~~~~~~~~~ifa~GD~~~~~~~~~~~~a~~~ 291 (368)
.+++++++|.||+++|++|+..++.. ..++.++++|++.||+ +++| +.|+|||+|||+.. ++++..|+.|
T Consensus 364 ~~~~~g~~~~i~~D~vi~a~G~~p~~~l~~~-~~gl~~~~~g~i~vd~~~~~T-s~~~VfA~GD~~~~--~~~~~~A~~~ 439 (457)
T PRK11749 364 RVPIEGSEFTLPADLVIKAIGQTPNPLILST-TPGLELNRWGTIIADDETGRT-SLPGVFAGGDIVTG--AATVVWAVGD 439 (457)
T ss_pred ccCCCCceEEEECCEEEECccCCCCchhhcc-ccCccCCCCCCEEeCCCCCcc-CCCCEEEeCCcCCC--chHHHHHHHH
Confidence 13347999999999999999766542 2233567889999998 7777 89999999999964 3478899999
Q ss_pred HHHHHHHHHHHHcCCC
Q 017664 292 ALVTAKNLKKLMMGRN 307 (368)
Q Consensus 292 g~~aa~~i~~~l~g~~ 307 (368)
|+.||.+|.+.|.|+.
T Consensus 440 G~~aA~~I~~~l~g~~ 455 (457)
T PRK11749 440 GKDAAEAIHEYLEGAA 455 (457)
T ss_pred HHHHHHHHHHHHhccc
Confidence 9999999999998753
No 56
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=100.00 E-value=8e-33 Score=267.07 Aligned_cols=278 Identities=23% Similarity=0.276 Sum_probs=197.3
Q ss_pred CCCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeecccee---eeecc-cccc-cceeeccccc--CceeEEE-
Q 017664 14 VEKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITWASLR---AVVEP-SFAV-RSVINHGDYL--SNVKIVV- 84 (368)
Q Consensus 14 ~~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~~~~~---~~~~~-~~~~-~~~~~~~~~~--~~~~~~~- 84 (368)
...+|++||||||||++||.+|+ .|++|+|+++. +|+.+.... ..... .... +......+.. .++++..
T Consensus 209 ~~~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~~--~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~ 286 (517)
T PRK15317 209 KDPYDVLVVGGGPAGAAAAIYAARKGIRTGIVAER--FGGQVLDTMGIENFISVPETEGPKLAAALEEHVKEYDVDIMNL 286 (517)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC--CCCeeeccCcccccCCCCCCCHHHHHHHHHHHHHHCCCEEEcC
Confidence 34689999999999999999997 59999999864 443332110 00000 0000 0000111111 1455543
Q ss_pred eEEEEeecc----EEEecCCeEEEecEEEEecCCCCCCCCchHHH-H-----HHHHHHHHHHhcCCeEEEEcCchhHHHH
Q 017664 85 STAVSITDT----EVVTAGGQTFVYDYVVVATGHVESVPKSRTER-L-----SQYEKDFEKVKSANSVLIVGGGPTGVEL 154 (368)
Q Consensus 85 ~~~~~~~~~----~v~~~~g~~~~~d~lvlAtG~~~~~p~~~~~~-~-----~~~~~~~~~~~~~~~v~VvG~g~~~~e~ 154 (368)
.++..++.. .+.+.++..+.||+||+|||+.|..|+++... + ............+++++|||+|++|+|+
T Consensus 287 ~~V~~I~~~~~~~~V~~~~g~~i~a~~vViAtG~~~r~~~ipG~~~~~~~~v~~~~~~~~~~~~gk~VvVVGgG~~g~e~ 366 (517)
T PRK15317 287 QRASKLEPAAGLIEVELANGAVLKAKTVILATGARWRNMNVPGEDEYRNKGVAYCPHCDGPLFKGKRVAVIGGGNSGVEA 366 (517)
T ss_pred CEEEEEEecCCeEEEEECCCCEEEcCEEEECCCCCcCCCCCCCHHHhcCceEEEeeccCchhcCCCEEEEECCCHHHHHH
Confidence 356666532 56667788899999999999997666544221 1 0011112223468999999999999999
Q ss_pred HHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHc-CCcEEEecceeeecccCCC---eEEcC---CC--cEEec
Q 017664 155 AGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTS-KKVEVILNQSVTLNTISDG---LIETS---SG--ETIDT 225 (368)
Q Consensus 155 a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~-~gv~i~~~~~v~~i~~~~~---~v~~~---~g--~~i~~ 225 (368)
|..|.. .+.+|+++++.+.+.. ...+.+.+++ .||++++++.+.+++.+++ .+.+. +| +++++
T Consensus 367 A~~L~~--~~~~Vtlv~~~~~l~~------~~~l~~~l~~~~gI~i~~~~~v~~i~~~~g~v~~v~~~~~~~g~~~~i~~ 438 (517)
T PRK15317 367 AIDLAG--IVKHVTVLEFAPELKA------DQVLQDKLRSLPNVTIITNAQTTEVTGDGDKVTGLTYKDRTTGEEHHLEL 438 (517)
T ss_pred HHHHHh--cCCEEEEEEECccccc------cHHHHHHHhcCCCcEEEECcEEEEEEcCCCcEEEEEEEECCCCcEEEEEc
Confidence 999984 5789999998876532 2445666665 6999999999999887644 24433 33 36999
Q ss_pred CEEEEccCCCCCchhhhccccccccCCCCcEEeCCCeeecCCCCeEEecccCCCCccchHHHHHHHHHHHHHHHHHHHcC
Q 017664 226 DCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITDIPEIKQGYLAQKHALVTAKNLKKLMMG 305 (368)
Q Consensus 226 d~vi~a~G~~p~~~~~~~~~l~~~~~~~g~i~vd~~~~~~~~~~ifa~GD~~~~~~~~~~~~a~~~g~~aa~~i~~~l~g 305 (368)
|.+++++|.+|+++++... + .++++|++.||+++|| +.|||||+|||+..+ .++...|+.+|..||.++..+|..
T Consensus 439 D~v~~~~G~~p~~~~l~~~-v--~~~~~g~i~vd~~l~T-s~p~IyAaGDv~~~~-~k~~~~A~~eG~~Aa~~~~~~l~~ 513 (517)
T PRK15317 439 EGVFVQIGLVPNTEWLKGT-V--ELNRRGEIIVDARGAT-SVPGVFAAGDCTTVP-YKQIIIAMGEGAKAALSAFDYLIR 513 (517)
T ss_pred CEEEEeECCccCchHHhhh-e--eeCCCCcEEECcCCCC-CCCCEEECccccCCC-CCEEEEhhhhHHHHHHHHHHHHhh
Confidence 9999999999999998765 3 6778899999999998 899999999999864 356889999999999999998865
Q ss_pred C
Q 017664 306 R 306 (368)
Q Consensus 306 ~ 306 (368)
.
T Consensus 514 ~ 514 (517)
T PRK15317 514 N 514 (517)
T ss_pred c
Confidence 4
No 57
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=100.00 E-value=3.4e-32 Score=273.26 Aligned_cols=278 Identities=18% Similarity=0.197 Sum_probs=186.5
Q ss_pred CCCCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeecc-ceeeeecccccccceeeccccc--CceeEEEeEEE
Q 017664 13 LVEKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITWA-SLRAVVEPSFAVRSVINHGDYL--SNVKIVVSTAV 88 (368)
Q Consensus 13 ~~~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 88 (368)
..+.++|+|||||||||+||.+|+ +|++|+|+|+.+.+|+... .+... .++........+++ .++++.....+
T Consensus 428 ~~~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~---rlp~~~~~~~~~~l~~~gv~~~~~~~v 504 (752)
T PRK12778 428 EKNGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGGVLKYGIPEF---RLPKKIVDVEIENLKKLGVKFETDVIV 504 (752)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeecCCCC---CCCHHHHHHHHHHHHHCCCEEECCCEE
Confidence 446789999999999999999998 5999999999876653321 11100 11111111111111 15666544332
Q ss_pred EeeccEEEecCCeEEEecEEEEecCCC-CCCCCch---HHHHHHHHHHHHH--------------HhcCCeEEEEcCchh
Q 017664 89 SITDTEVVTAGGQTFVYDYVVVATGHV-ESVPKSR---TERLSQYEKDFEK--------------VKSANSVLIVGGGPT 150 (368)
Q Consensus 89 ~~~~~~v~~~~g~~~~~d~lvlAtG~~-~~~p~~~---~~~~~~~~~~~~~--------------~~~~~~v~VvG~g~~ 150 (368)
.+.+.+.+.....||+||||||+. |..|+++ ..++.+...+... ...+++|+|||+|++
T Consensus 505 ---~~~v~~~~l~~~~ydavvlAtGa~~~~~l~ipG~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~ 581 (752)
T PRK12778 505 ---GKTITIEELEEEGFKGIFIASGAGLPNFMNIPGENSNGVMSSNEYLTRVNLMDAASPDSDTPIKFGKKVAVVGGGNT 581 (752)
T ss_pred ---CCcCCHHHHhhcCCCEEEEeCCCCCCCCCCCCCCCCCCcEEHHHHHHHHhhcccccccccCcccCCCcEEEECCcHH
Confidence 123334344456799999999994 5544433 2222222221111 234689999999999
Q ss_pred HHHHHHHHhhhCCCCe-EEEEecCcccccccCchhHHHHHHHHHcCCcEEEecceeeecccCC-C---eEEcC-------
Q 017664 151 GVELAGEIAVDFPDKK-VILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVTLNTISD-G---LIETS------- 218 (368)
Q Consensus 151 ~~e~a~~l~~~~~~~~-v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~-~---~v~~~------- 218 (368)
|+|+|..+.+ .+.+ |+++++++.. .++.. .. ..+.+++.||++++++.+.++..++ + .+++.
T Consensus 582 a~d~A~~~~r--~Ga~~Vtlv~r~~~~--~~~~~-~~-e~~~~~~~GV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~ 655 (752)
T PRK12778 582 AMDSARTAKR--LGAERVTIVYRRSEE--EMPAR-LE-EVKHAKEEGIEFLTLHNPIEYLADEKGWVKQVVLQKMELGEP 655 (752)
T ss_pred HHHHHHHHHH--cCCCeEEEeeecCcc--cCCCC-HH-HHHHHHHcCCEEEecCcceEEEECCCCEEEEEEEEEEEecCc
Confidence 9999998874 4555 9999987541 11211 12 2245778899999999888876433 3 22221
Q ss_pred --CC-----------cEEecCEEEEccCCCCCchhhhccccccccCCCCcEEeCCCeeecCCCCeEEecccCCCCccchH
Q 017664 219 --SG-----------ETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITDIPEIKQG 285 (368)
Q Consensus 219 --~g-----------~~i~~d~vi~a~G~~p~~~~~~~~~l~~~~~~~g~i~vd~~~~~~~~~~ifa~GD~~~~~~~~~~ 285 (368)
+| .++++|.||+|+|+.|+..++... .++.++++|++.||++++| +.|+|||+|||+..+ .++
T Consensus 656 ~~~G~~~~~~~~g~~~~i~~D~Vi~A~G~~p~~~l~~~~-~gl~~~~~G~i~vd~~~~T-s~~gVfA~GD~~~g~--~~v 731 (752)
T PRK12778 656 DASGRRRPVAIPGSTFTVDVDLVIVSVGVSPNPLVPSSI-PGLELNRKGTIVVDEEMQS-SIPGIYAGGDIVRGG--ATV 731 (752)
T ss_pred CCCCCCCceecCCCeEEEECCEEEECcCCCCCccccccc-cCceECCCCCEEeCCCCCC-CCCCEEEeCCccCCc--HHH
Confidence 12 269999999999999997665442 1336678899999999987 899999999999754 378
Q ss_pred HHHHHHHHHHHHHHHHHHcCC
Q 017664 286 YLAQKHALVTAKNLKKLMMGR 306 (368)
Q Consensus 286 ~~a~~~g~~aa~~i~~~l~g~ 306 (368)
..|+.+|+.||.+|.++|.++
T Consensus 732 v~Av~~G~~AA~~I~~~L~~~ 752 (752)
T PRK12778 732 ILAMGDGKRAAAAIDEYLSSK 752 (752)
T ss_pred HHHHHHHHHHHHHHHHHhccC
Confidence 899999999999999998763
No 58
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=100.00 E-value=4.7e-32 Score=254.83 Aligned_cols=339 Identities=19% Similarity=0.260 Sum_probs=252.9
Q ss_pred CCCcEEEECCChHHHHHHHHhh----cCCcEEEEcCCCceeeeccceeeeecc-cccccceeecccccC--ceeEEE-eE
Q 017664 15 EKKKVVVIGGGVGGSLLAYHIQ----SFADVVLIDEKEYFEITWASLRAVVEP-SFAVRSVINHGDYLS--NVKIVV-ST 86 (368)
Q Consensus 15 ~~~~vvIIGaG~aGl~aA~~L~----~g~~v~lie~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~-~~ 86 (368)
.+.+++|||.|++|..+...+. .-++|+++-.+++..++...++..+.+ ....+......+|+. +++++. ..
T Consensus 2 ~k~klvvvGnGmag~r~iEell~~~~~~~~iTvfg~Ep~~nY~Ri~Ls~vl~~~~~~edi~l~~~dwy~~~~i~L~~~~~ 81 (793)
T COG1251 2 KKQKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRPNYNRILLSSVLAGEKTAEDISLNRNDWYEENGITLYTGEK 81 (793)
T ss_pred CceeEEEEecccchhhHHHHHHhcCcccceEEEeccCCCccccceeeccccCCCccHHHHhccchhhHHHcCcEEEcCCe
Confidence 4578999999999999998764 268999999999998888888777665 333444555566664 566554 46
Q ss_pred EEEeec--cEEEecCCeEEEecEEEEecCCCCCCCCch---------HHHHHHHHHHHHHHhcCCeEEEEcCchhHHHHH
Q 017664 87 AVSITD--TEVVTAGGQTFVYDYVVVATGHVESVPKSR---------TERLSQYEKDFEKVKSANSVLIVGGGPTGVELA 155 (368)
Q Consensus 87 ~~~~~~--~~v~~~~g~~~~~d~lvlAtG~~~~~p~~~---------~~~~~~~~~~~~~~~~~~~v~VvG~g~~~~e~a 155 (368)
++.+|+ +.|++..|.++.||.|++|||+.|++|+++ .+.+.+...+.......++.+|||+|..|+|+|
T Consensus 82 v~~idr~~k~V~t~~g~~~~YDkLilATGS~pfi~PiPG~~~~~v~~~R~i~D~~am~~~ar~~~~avVIGGGLLGlEaA 161 (793)
T COG1251 82 VIQIDRANKVVTTDAGRTVSYDKLIIATGSYPFILPIPGSDLPGVFVYRTIDDVEAMLDCARNKKKAVVIGGGLLGLEAA 161 (793)
T ss_pred eEEeccCcceEEccCCcEeecceeEEecCccccccCCCCCCCCCeeEEecHHHHHHHHHHHhccCCcEEEccchhhhHHH
Confidence 788875 488899999999999999999998777654 245666666666655567789999999999999
Q ss_pred HHHhhhCCCCeEEEEecCccccc-ccCchhHHHHHHHHHcCCcEEEecceeeecccCCC--eEEcCCCcEEecCEEEEcc
Q 017664 156 GEIAVDFPDKKVILVHRGPKLLE-FVGSRASQIALDWLTSKKVEVILNQSVTLNTISDG--LIETSSGETIDTDCHFMCT 232 (368)
Q Consensus 156 ~~l~~~~~~~~v~~i~~~~~~l~-~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~--~v~~~~g~~i~~d~vi~a~ 232 (368)
..|.+ .+.++++++-.+.++. .+++.....+++.++++|++++++...+++..++. .++++||+.+++|.|++|+
T Consensus 162 ~~L~~--~Gm~~~Vvh~~~~lMerQLD~~ag~lL~~~le~~Gi~~~l~~~t~ei~g~~~~~~vr~~DG~~i~ad~VV~a~ 239 (793)
T COG1251 162 RGLKD--LGMEVTVVHIAPTLMERQLDRTAGRLLRRKLEDLGIKVLLEKNTEEIVGEDKVEGVRFADGTEIPADLVVMAV 239 (793)
T ss_pred HHHHh--CCCceEEEeecchHHHHhhhhHHHHHHHHHHHhhcceeecccchhhhhcCcceeeEeecCCCcccceeEEEec
Confidence 99985 6899999988777654 57778888899999999999999998887766444 8999999999999999999
Q ss_pred CCCCCchhhhccccccccCCCCcEEeCCCeeecCCCCeEEecccCCCCc--cchHHHHHHHHHHHHHHHHHHHcCCCCCC
Q 017664 233 GKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITDIPE--IKQGYLAQKHALVTAKNLKKLMMGRNKGT 310 (368)
Q Consensus 233 G~~p~~~~~~~~~l~~~~~~~g~i~vd~~~~~~~~~~ifa~GD~~~~~~--~~~~~~a~~~g~~aa~~i~~~l~g~~~~~ 310 (368)
|.+|+..+..+.++ ..++ .|.||+++|| +.|+|||+|+|+.+.. ..+...+..|++++|+++.....+....
T Consensus 240 GIrPn~ela~~aGl--avnr--GIvvnd~mqT-sdpdIYAvGEcae~~g~~yGLVaP~yeq~~v~a~hl~~~~~~~y~g- 313 (793)
T COG1251 240 GIRPNDELAKEAGL--AVNR--GIVVNDYMQT-SDPDIYAVGECAEHRGKVYGLVAPLYEQAKVLADHLCGGEAEAYEG- 313 (793)
T ss_pred ccccccHhHHhcCc--CcCC--Ceeecccccc-cCCCeeehhhHHHhcCccceehhHHHHHHHHHHHHhccCccccccc-
Confidence 99999999999987 4454 6999999999 8999999999998743 2356789999999999998433221110
Q ss_pred cccccc--CCCeEEEeecCCcceeEecCccccCccceeeeccccchhHHHHHcCCC
Q 017664 311 MATYKP--GYPIALVSLGRREGVAHFPFLTISGRIPGWIKSRDLFVGKTRKQLGLK 364 (368)
Q Consensus 311 ~~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~lG~~ 364 (368)
...++- -+.+-+.+.|..+.-.......+.+...+.+|- ++.+++ +|+|+-
T Consensus 314 sv~stkLKv~Gvdl~S~GD~~e~~~~~~iv~~D~~~~iYKr--lvL~dd-~Ivgav 366 (793)
T COG1251 314 SVTSTKLKVSGVDVFSAGDFQETEGAESIVFRDEQRGIYKK--LVLKDD-KIVGAV 366 (793)
T ss_pred ccchhhhcccccceeeccchhhcCCCceEEEecccccceeE--EEEeCC-eEEEEE
Confidence 011110 133444455544311111223355566666665 455543 777653
No 59
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=99.98 E-value=3e-31 Score=253.26 Aligned_cols=282 Identities=17% Similarity=0.185 Sum_probs=185.3
Q ss_pred CCCCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeecc-ceeeeecccccccceeeccccc--CceeEEEeEEE
Q 017664 13 LVEKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITWA-SLRAVVEPSFAVRSVINHGDYL--SNVKIVVSTAV 88 (368)
Q Consensus 13 ~~~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 88 (368)
....++|+||||||||+++|..|+ +|++|+|+|+++.++..+. .+... ...........+++ .++++.....+
T Consensus 140 ~~~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l~~gip~~---~~~~~~~~~~~~~~~~~gv~~~~~~~v 216 (471)
T PRK12810 140 KRTGKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLLRYGIPDF---KLEKEVIDRRIELMEAEGIEFRTNVEV 216 (471)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCceeeecCCcc---cCCHHHHHHHHHHHHhCCcEEEeCCEE
Confidence 345679999999999999999998 5999999999987763321 11100 01111111111111 15566554443
Q ss_pred EeeccEEEecCCeEEEecEEEEecCCC-CC---CCCchHHHHHHHHHHHH--------------HHhcCCeEEEEcCchh
Q 017664 89 SITDTEVVTAGGQTFVYDYVVVATGHV-ES---VPKSRTERLSQYEKDFE--------------KVKSANSVLIVGGGPT 150 (368)
Q Consensus 89 ~~~~~~v~~~~g~~~~~d~lvlAtG~~-~~---~p~~~~~~~~~~~~~~~--------------~~~~~~~v~VvG~g~~ 150 (368)
..+.. . +.....||+|++|||+. |. +|+.+..++.....+.. ....+++++|||+|++
T Consensus 217 ~~~~~---~-~~~~~~~d~vvlAtGa~~~~~l~ipG~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~ 292 (471)
T PRK12810 217 GKDIT---A-EELLAEYDAVFLGTGAYKPRDLGIPGRDLDGVHFAMDFLIQNTRRVLGDETEPFISAKGKHVVVIGGGDT 292 (471)
T ss_pred CCcCC---H-HHHHhhCCEEEEecCCCCCCcCCCCCccCCCcEEHHHHHHHHHhhhccccccccccCCCCEEEEECCcHH
Confidence 22210 0 11235799999999997 43 44443333322211111 1234789999999999
Q ss_pred HHHHHHHHhhhCCCCeEEEEecCccccccc-C----chhH-HHHHHHHHcCCcEEEecceeeecccCCCe---EE-----
Q 017664 151 GVELAGEIAVDFPDKKVILVHRGPKLLEFV-G----SRAS-QIALDWLTSKKVEVILNQSVTLNTISDGL---IE----- 216 (368)
Q Consensus 151 ~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~-~----~~~~-~~~~~~l~~~gv~i~~~~~v~~i~~~~~~---v~----- 216 (368)
|+|+|..+.+ ....+|+.++..+...... + +... ....+.+++.||++++++.+.++..+++. ++
T Consensus 293 g~e~A~~~~~-~ga~~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GV~i~~~~~~~~i~~~~g~v~~V~~~~~~ 371 (471)
T PRK12810 293 GMDCVGTAIR-QGAKSVTQRDIMPMPPSRRNKNNPWPYWPMKLEVSNAHEEGVEREFNVQTKEFEGENGKVTGVKVVRTE 371 (471)
T ss_pred HHHHHHHHHH-cCCCeEEEccccCCCccccccccCCcccchHHHHHHHHHcCCeEEeccCceEEEccCCEEEEEEEEEEE
Confidence 9999987764 3345788665543221111 0 0111 11356678889999999999988754442 22
Q ss_pred cCCC---------cEEecCEEEEccCCCCCc-hhhhccccccccCCCCcEEeC-CCeeecCCCCeEEecccCCCCccchH
Q 017664 217 TSSG---------ETIDTDCHFMCTGKAMAS-SWLRETILKDSLDGRGRLMVD-ENLRVRGFKNVFAIGDITDIPEIKQG 285 (368)
Q Consensus 217 ~~~g---------~~i~~d~vi~a~G~~p~~-~~~~~~~l~~~~~~~g~i~vd-~~~~~~~~~~ifa~GD~~~~~~~~~~ 285 (368)
+.+| +++++|.||+|+|++|+. .++...++ .++++|++.+| ++++| +.|+|||+|||+..+. +.
T Consensus 372 ~~~g~~~~~~g~~~~i~~D~VI~A~G~~p~~~~l~~~~gl--~~~~~g~i~vd~~~~~T-s~~gVfa~GD~~~g~~--~~ 446 (471)
T PRK12810 372 LGEGDFEPVEGSEFVLPADLVLLAMGFTGPEAGLLAQFGV--ELDERGRVAAPDNAYQT-SNPKVFAAGDMRRGQS--LV 446 (471)
T ss_pred ecCCCccccCCceEEEECCEEEECcCcCCCchhhccccCc--ccCCCCCEEeCCCcccC-CCCCEEEccccCCCch--hH
Confidence 2222 479999999999999985 46655544 67788999998 68987 8999999999997543 67
Q ss_pred HHHHHHHHHHHHHHHHHHcCCC
Q 017664 286 YLAQKHALVTAKNLKKLMMGRN 307 (368)
Q Consensus 286 ~~a~~~g~~aa~~i~~~l~g~~ 307 (368)
..|+.+|+.||.+|.++|.|+.
T Consensus 447 ~~Av~~G~~AA~~i~~~L~g~~ 468 (471)
T PRK12810 447 VWAIAEGRQAARAIDAYLMGST 468 (471)
T ss_pred HHHHHHHHHHHHHHHHHHhcCC
Confidence 8999999999999999998753
No 60
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=99.98 E-value=3.5e-31 Score=267.86 Aligned_cols=278 Identities=15% Similarity=0.137 Sum_probs=188.0
Q ss_pred CCCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeeccceeeeec-ccccccceeeccccc--CceeEEEeEEEE
Q 017664 14 VEKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITWASLRAVVE-PSFAVRSVINHGDYL--SNVKIVVSTAVS 89 (368)
Q Consensus 14 ~~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 89 (368)
.+.++|+|||||||||+||.+|+ +|++|+|+|+.+.+|+.. +..+. ...+.+.+....+.+ .++++.....+.
T Consensus 304 ~~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l---~yGIP~~rlp~~vi~~~i~~l~~~Gv~f~~n~~vG 380 (944)
T PRK12779 304 AVKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVL---RYGIPEFRLPNQLIDDVVEKIKLLGGRFVKNFVVG 380 (944)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceE---EccCCCCcChHHHHHHHHHHHHhhcCeEEEeEEec
Confidence 35789999999999999999998 599999999998776432 11111 111111111111111 256665554332
Q ss_pred eeccEEEecCCeEEEecEEEEecCCC-CC---CCCchHHHHHHHHHHHHH----------------HhcCCeEEEEcCch
Q 017664 90 ITDTEVVTAGGQTFVYDYVVVATGHV-ES---VPKSRTERLSQYEKDFEK----------------VKSANSVLIVGGGP 149 (368)
Q Consensus 90 ~~~~~v~~~~g~~~~~d~lvlAtG~~-~~---~p~~~~~~~~~~~~~~~~----------------~~~~~~v~VvG~g~ 149 (368)
+.+.+.+.....||+|+||||+. |. +|+.+..++.....++.. ...+++|+|||+|+
T Consensus 381 ---~dit~~~l~~~~yDAV~LAtGA~~pr~l~IpG~dl~GV~~a~dfL~~~~~~~~~~~~~~~~~~~~~Gk~VvVIGGG~ 457 (944)
T PRK12779 381 ---KTATLEDLKAAGFWKIFVGTGAGLPTFMNVPGEHLLGVMSANEFLTRVNLMRGLDDDYETPLPEVKGKEVFVIGGGN 457 (944)
T ss_pred ---cEEeHHHhccccCCEEEEeCCCCCCCcCCCCCCcCcCcEEHHHHHHHHHhhccccccccccccccCCCEEEEECCCH
Confidence 23555555556799999999996 54 444333333222222211 11468999999999
Q ss_pred hHHHHHHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHcCCcEEEecceeeecccCC-C-eE---Ec-------
Q 017664 150 TGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVTLNTISD-G-LI---ET------- 217 (368)
Q Consensus 150 ~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~-~-~v---~~------- 217 (368)
+|+|+|..+.+ .+.+|+++++++.. .++ .....+.. ..+.||++++++.++++..++ + .+ .+
T Consensus 458 tA~D~A~ta~R--~Ga~Vtlv~rr~~~--~mp-a~~~e~~~-a~eeGV~~~~~~~p~~i~~d~~~~~V~~v~~~~~~l~~ 531 (944)
T PRK12779 458 TAMDAARTAKR--LGGNVTIVYRRTKS--EMP-ARVEELHH-ALEEGINLAVLRAPREFIGDDHTHFVTHALLDVNELGE 531 (944)
T ss_pred HHHHHHHHHHH--cCCEEEEEEecCcc--ccc-ccHHHHHH-HHHCCCEEEeCcceEEEEecCCCCEEEEEEEEEEEecc
Confidence 99999999884 57789999987541 111 22233333 346799999998888876542 2 11 11
Q ss_pred --C--------CC--cEEecCEEEEccCCCCCchhhhccccccccCCCCcEEeCCC-eeecCCCCeEEecccCCCCccch
Q 017664 218 --S--------SG--ETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDEN-LRVRGFKNVFAIGDITDIPEIKQ 284 (368)
Q Consensus 218 --~--------~g--~~i~~d~vi~a~G~~p~~~~~~~~~l~~~~~~~g~i~vd~~-~~~~~~~~ifa~GD~~~~~~~~~ 284 (368)
. +| .++++|.||+|+|+.|+..+ .....+++.+++|.+.||+. ++| +.|+|||+|||+..+. +
T Consensus 532 ~d~~Gr~~~~~~G~e~~i~aD~VI~AiG~~p~~~l-~~~~~gle~~~~G~I~vd~~~~~T-s~pgVFAaGD~~~G~~--~ 607 (944)
T PRK12779 532 PDKSGRRSPKPTGEIERVPVDLVIMALGNTANPIM-KDAEPGLKTNKWGTIEVEKGSQRT-SIKGVYSGGDAARGGS--T 607 (944)
T ss_pred ccCcCceeeecCCceEEEECCEEEEcCCcCCChhh-hhcccCceECCCCCEEECCCCCcc-CCCCEEEEEcCCCChH--H
Confidence 1 22 36999999999999998653 33333446778899999974 777 8999999999997644 7
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCC
Q 017664 285 GYLAQKHALVTAKNLKKLMMGRN 307 (368)
Q Consensus 285 ~~~a~~~g~~aa~~i~~~l~g~~ 307 (368)
+..|+.+|+.||.+|.++|...+
T Consensus 608 vv~Ai~eGr~AA~~I~~~L~~~~ 630 (944)
T PRK12779 608 AIRAAGDGQAAAKEIVGEIPFTP 630 (944)
T ss_pred HHHHHHHHHHHHHHHHHHhcccc
Confidence 89999999999999999886543
No 61
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=99.97 E-value=4.3e-31 Score=260.41 Aligned_cols=277 Identities=17% Similarity=0.180 Sum_probs=185.4
Q ss_pred CCCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeeccc-eeeeecccccccceeeccccc--CceeEEEeEEEE
Q 017664 14 VEKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITWAS-LRAVVEPSFAVRSVINHGDYL--SNVKIVVSTAVS 89 (368)
Q Consensus 14 ~~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 89 (368)
.+.++|+|||||||||++|..|+ +|++|+|+|+++.+|+.+.. +... ...........+.+ .++++.......
T Consensus 191 ~~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~~gip~~---~~~~~~~~~~~~~l~~~Gv~i~~~~~v~ 267 (652)
T PRK12814 191 KSGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMRYGIPRF---RLPESVIDADIAPLRAMGAEFRFNTVFG 267 (652)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeecCCCC---CCCHHHHHHHHHHHHHcCCEEEeCCccc
Confidence 35679999999999999999998 59999999999887643211 1100 01111110001111 145554443322
Q ss_pred eeccEEEecCCeEEEecEEEEecCCCC----CCCCchHHHHHHHHHHHH------HHhcCCeEEEEcCchhHHHHHHHHh
Q 017664 90 ITDTEVVTAGGQTFVYDYVVVATGHVE----SVPKSRTERLSQYEKDFE------KVKSANSVLIVGGGPTGVELAGEIA 159 (368)
Q Consensus 90 ~~~~~v~~~~g~~~~~d~lvlAtG~~~----~~p~~~~~~~~~~~~~~~------~~~~~~~v~VvG~g~~~~e~a~~l~ 159 (368)
.+ +...+. ...||+|++|||+.+ .+|+.+...+.+...... ....+++++|||+|++|+|+|..+.
T Consensus 268 ~d---v~~~~~-~~~~DaVilAtGa~~~~~~~ipG~~~~gv~~~~~~l~~~~~~~~~~~gk~VvVIGgG~~a~e~A~~l~ 343 (652)
T PRK12814 268 RD---ITLEEL-QKEFDAVLLAVGAQKASKMGIPGEELPGVISGIDFLRNVALGTALHPGKKVVVIGGGNTAIDAARTAL 343 (652)
T ss_pred Cc---cCHHHH-HhhcCEEEEEcCCCCCCCCCCCCcCcCCcEeHHHHHHHhhcCCcccCCCeEEEECCCHHHHHHHHHHH
Confidence 21 111111 235999999999973 344433332222222221 2345899999999999999999887
Q ss_pred hhCCCCeEEEEecCcc-cccccCchhHHHHHHHHHcCCcEEEecceeeecccCCCe--EE---cC---------------
Q 017664 160 VDFPDKKVILVHRGPK-LLEFVGSRASQIALDWLTSKKVEVILNQSVTLNTISDGL--IE---TS--------------- 218 (368)
Q Consensus 160 ~~~~~~~v~~i~~~~~-~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~--v~---~~--------------- 218 (368)
+ ....+|+++++..+ .++..+ ..+.+. .+.||++++++.+.++..+++. +. +.
T Consensus 344 ~-~Ga~~Vtlv~r~~~~~mpa~~----~ei~~a-~~eGV~i~~~~~~~~i~~~~~~~~v~~~~~~~~~~d~~G~~~~~~~ 417 (652)
T PRK12814 344 R-LGAESVTILYRRTREEMPANR----AEIEEA-LAEGVSLRELAAPVSIERSEGGLELTAIKMQQGEPDESGRRRPVPV 417 (652)
T ss_pred H-cCCCeEEEeeecCcccCCCCH----HHHHHH-HHcCCcEEeccCcEEEEecCCeEEEEEEEEEecccCCCCCCcceec
Confidence 4 33457999998764 333222 233333 3569999999988877654431 11 11
Q ss_pred CC--cEEecCEEEEccCCCCCchhhhccccccccCCCCcEEeCCC-eeecCCCCeEEecccCCCCccchHHHHHHHHHHH
Q 017664 219 SG--ETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDEN-LRVRGFKNVFAIGDITDIPEIKQGYLAQKHALVT 295 (368)
Q Consensus 219 ~g--~~i~~d~vi~a~G~~p~~~~~~~~~l~~~~~~~g~i~vd~~-~~~~~~~~ifa~GD~~~~~~~~~~~~a~~~g~~a 295 (368)
+| .++++|.||+++|+.|+.+++...++ .++.+|++.||++ ++| +.|+|||+||++..+ .++..|+.||+.|
T Consensus 418 ~g~~~~i~~D~VI~AiG~~p~~~ll~~~gl--~~~~~G~I~vd~~~~~T-s~pgVfA~GDv~~g~--~~v~~Ai~~G~~A 492 (652)
T PRK12814 418 EGSEFTLQADTVISAIGQQVDPPIAEAAGI--GTSRNGTVKVDPETLQT-SVAGVFAGGDCVTGA--DIAINAVEQGKRA 492 (652)
T ss_pred CCceEEEECCEEEECCCCcCCcccccccCc--cccCCCcEeeCCCCCcC-CCCCEEEcCCcCCCc--hHHHHHHHHHHHH
Confidence 22 26999999999999999988876655 5677899999984 666 899999999999754 3788999999999
Q ss_pred HHHHHHHHcCCCC
Q 017664 296 AKNLKKLMMGRNK 308 (368)
Q Consensus 296 a~~i~~~l~g~~~ 308 (368)
|.+|.++|.|++.
T Consensus 493 A~~I~~~L~g~~~ 505 (652)
T PRK12814 493 AHAIDLFLNGKPV 505 (652)
T ss_pred HHHHHHHHcCCCC
Confidence 9999999988753
No 62
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=99.97 E-value=1.5e-30 Score=260.73 Aligned_cols=269 Identities=20% Similarity=0.225 Sum_probs=179.1
Q ss_pred CCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeeccceeeeecc-cccccceeeccccc--CceeEEEeEEEEe
Q 017664 15 EKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITWASLRAVVEP-SFAVRSVINHGDYL--SNVKIVVSTAVSI 90 (368)
Q Consensus 15 ~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 90 (368)
+.++|+|||||||||+||++|+ +|++|+|+|+++..|+.... .+.. ..+.+.+....+++ .++++..+...
T Consensus 536 ~~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lGG~l~~---~IP~~rlp~e~l~~~ie~l~~~GVe~~~g~~~-- 610 (1012)
T TIGR03315 536 SAHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGVVKN---IIPEFRISAESIQKDIELVKFHGVEFKYGCSP-- 610 (1012)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccCceeee---cccccCCCHHHHHHHHHHHHhcCcEEEEeccc--
Confidence 4689999999999999999998 59999999999877644311 1110 01111111111111 15555544211
Q ss_pred eccEEEecCCeEEEecEEEEecCCCC-CCCCchH--HH----HHHHHHHH---HHHhcCCeEEEEcCchhHHHHHHHHhh
Q 017664 91 TDTEVVTAGGQTFVYDYVVVATGHVE-SVPKSRT--ER----LSQYEKDF---EKVKSANSVLIVGGGPTGVELAGEIAV 160 (368)
Q Consensus 91 ~~~~v~~~~g~~~~~d~lvlAtG~~~-~~p~~~~--~~----~~~~~~~~---~~~~~~~~v~VvG~g~~~~e~a~~l~~ 160 (368)
.+...+.+...||+|+||||+.+ ..+++++ .. +..+.... .....+++|+|||+|++|+|+|..+.+
T Consensus 611 ---d~~ve~l~~~gYDaVIIATGA~~~~~l~I~G~~~~v~~avefL~~~~~~~~~~~~GK~VVVIGGGnvAmD~Ar~a~R 687 (1012)
T TIGR03315 611 ---DLTVAELKNQGYKYVILAIGAWKHGPLRLEGGGERVLKSLEFLRAFKEGPTINPLGKHVVVVGGGNTAMDAARAALR 687 (1012)
T ss_pred ---ceEhhhhhcccccEEEECCCCCCCCCCCcCCCCcceeeHHHHHHHhhccccccccCCeEEEECCCHHHHHHHHHHHH
Confidence 11222334567999999999983 2222221 11 11111111 112458999999999999999998774
Q ss_pred hCCC-CeEEEEecCcc-cccccCchhHHHHHHHHHcCCcEEEecceeeecccCCC-eE---------------EcCCC--
Q 017664 161 DFPD-KKVILVHRGPK-LLEFVGSRASQIALDWLTSKKVEVILNQSVTLNTISDG-LI---------------ETSSG-- 220 (368)
Q Consensus 161 ~~~~-~~v~~i~~~~~-~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~-~v---------------~~~~g-- 220 (368)
.++ .+|++++++.. .++.. ...+.+.+ +.||++++...+.+++ ++. .+ ...+|
T Consensus 688 -l~Ga~kVtLVyRr~~~~Mpa~----~eEl~~al-eeGVe~~~~~~p~~I~-~g~l~v~~~~l~~~d~sGr~~~v~~Gee 760 (1012)
T TIGR03315 688 -VPGVEKVTVVYRRTKRYMPAS----REELEEAL-EDGVDFKELLSPESFE-DGTLTCEVMKLGEPDASGRRRPVGTGET 760 (1012)
T ss_pred -hCCCceEEEEEccCccccccC----HHHHHHHH-HcCCEEEeCCceEEEE-CCeEEEEEEEeecccCCCceeeecCCCe
Confidence 334 58999998763 33322 23333333 5699999988877665 211 11 11123
Q ss_pred cEEecCEEEEccCCCCCchhhhccccccccCCCCcEEeCCC-eeecCCCCeEEecccCCCCccchHHHHHHHHHHHHHHH
Q 017664 221 ETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDEN-LRVRGFKNVFAIGDITDIPEIKQGYLAQKHALVTAKNL 299 (368)
Q Consensus 221 ~~i~~d~vi~a~G~~p~~~~~~~~~l~~~~~~~g~i~vd~~-~~~~~~~~ifa~GD~~~~~~~~~~~~a~~~g~~aa~~i 299 (368)
.++++|.||+|+|+.|+.+++...++ .++++|++.||++ ++| +.|+|||+|||+..|. ++..|+.||+.||.+|
T Consensus 761 ~~I~aD~VIvAiG~~Pnt~lle~~GL--~ld~~G~I~VD~~~~~T-s~pgVFAaGD~a~GP~--tVv~AIaqGr~AA~nI 835 (1012)
T TIGR03315 761 VDLPADTVIAAVGEQVDTDLLQKNGI--PLDEYGWPVVNQATGET-NITNVFVIGDANRGPA--TIVEAIADGRKAANAI 835 (1012)
T ss_pred EEEEeCEEEEecCCcCChHHHHhcCc--ccCCCCCEEeCCCCCcc-CCCCEEEEeCcCCCcc--HHHHHHHHHHHHHHHH
Confidence 37999999999999999998876555 6678899999986 777 8999999999986544 7889999999999999
Q ss_pred HHHH
Q 017664 300 KKLM 303 (368)
Q Consensus 300 ~~~l 303 (368)
++..
T Consensus 836 l~~~ 839 (1012)
T TIGR03315 836 LSRE 839 (1012)
T ss_pred hccc
Confidence 8654
No 63
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=5.5e-32 Score=231.95 Aligned_cols=341 Identities=19% Similarity=0.211 Sum_probs=235.3
Q ss_pred CCCCCcEEEECCChHHHHHHHHhh-cCCcEEEEc---CCCceeeeccc--------------------------------
Q 017664 13 LVEKKKVVVIGGGVGGSLLAYHIQ-SFADVVLID---EKEYFEITWAS-------------------------------- 56 (368)
Q Consensus 13 ~~~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie---~~~~~~~~~~~-------------------------------- 56 (368)
....+|++|||||.+||+||++.+ .|.+|.++| +.+ .|-.|+.
T Consensus 16 ~sydyDLIviGgGSgGLacaKeAa~~G~kV~~lDfV~PtP-~GtsWGlGGTCvNVGCIPKKLMHQAallG~al~da~kyG 94 (503)
T KOG4716|consen 16 SSYDYDLIVIGGGSGGLACAKEAADLGAKVACLDFVKPTP-QGTSWGLGGTCVNVGCIPKKLMHQAALLGEALHDARKYG 94 (503)
T ss_pred ccCCccEEEEcCCcchhhHHHHHHhcCCcEEEEeecccCC-CCCccccCceeeecccccHHHHHHHHHHHHHHHHHHhhC
Confidence 345799999999999999999987 499999987 333 2211210
Q ss_pred --------------eeeeecccccccceeecccc-cCceeEEEeEEEEeeccEEEec--CC--eEEEecEEEEecCCCCC
Q 017664 57 --------------LRAVVEPSFAVRSVINHGDY-LSNVKIVVSTAVSITDTEVVTA--GG--QTFVYDYVVVATGHVES 117 (368)
Q Consensus 57 --------------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~--~g--~~~~~d~lvlAtG~~~~ 117 (368)
+...+...+.......+-++ .+.++.++....+++++++... ++ +.++++..+||||.+|.
T Consensus 95 W~~~e~~ikhdW~~l~~sVqnhI~s~NW~yRv~LreKkV~Y~NsygeFv~~h~I~at~~~gk~~~~ta~~fvIatG~RPr 174 (503)
T KOG4716|consen 95 WNVDEQKIKHDWNKLVKSVQNHIKSLNWGYRVQLREKKVEYINSYGEFVDPHKIKATNKKGKERFLTAENFVIATGLRPR 174 (503)
T ss_pred CCCccccccccHHHHHHHHHHHhhhccceEEEEeccceeeeeecceeecccceEEEecCCCceEEeecceEEEEecCCCC
Confidence 00000000000000000000 1245667778888888866433 33 46889999999999998
Q ss_pred CCCchHH--HHHHHHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHcC
Q 017664 118 VPKSRTE--RLSQYEKDFEKVKSANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSK 195 (368)
Q Consensus 118 ~p~~~~~--~~~~~~~~~~~~~~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~ 195 (368)
.|++++. .-.+.++.....+.+.+.+|||+|+.++|+|..|. ..+.+|++..|+ -++..+|.++.+.+.++++++
T Consensus 175 Yp~IpG~~Ey~ITSDDlFsl~~~PGkTLvVGa~YVaLECAgFL~--gfg~~vtVmVRS-I~LrGFDqdmae~v~~~m~~~ 251 (503)
T KOG4716|consen 175 YPDIPGAKEYGITSDDLFSLPYEPGKTLVVGAGYVALECAGFLK--GFGYDVTVMVRS-ILLRGFDQDMAELVAEHMEER 251 (503)
T ss_pred CCCCCCceeeeecccccccccCCCCceEEEccceeeeehhhhHh--hcCCCcEEEEEE-eecccccHHHHHHHHHHHHHh
Confidence 8887642 22344445555566889999999999999999998 578899988876 467889999999999999999
Q ss_pred CcEEEecceeeecccCCC---eEE---cCCCc--EEecCEEEEccCCCCCchhhhccccccccCC-CCcEEeCCCeeecC
Q 017664 196 KVEVILNQSVTLNTISDG---LIE---TSSGE--TIDTDCHFMCTGKAMASSWLRETILKDSLDG-RGRLMVDENLRVRG 266 (368)
Q Consensus 196 gv~i~~~~~v~~i~~~~~---~v~---~~~g~--~i~~d~vi~a~G~~p~~~~~~~~~l~~~~~~-~g~i~vd~~~~~~~ 266 (368)
||++...+.+.+++.-+. .|. +..++ +-++|.|+||.|+.+..+-+.....++..|+ .|.|.+|+.-++ +
T Consensus 252 Gikf~~~~vp~~Veq~~~g~l~v~~k~t~t~~~~~~~ydTVl~AiGR~~~~~~l~L~~~GVk~n~ks~KI~v~~~e~t-~ 330 (503)
T KOG4716|consen 252 GIKFLRKTVPERVEQIDDGKLRVFYKNTNTGEEGEEEYDTVLWAIGRKALTDDLNLDNAGVKTNEKSGKIPVDDEEAT-N 330 (503)
T ss_pred CCceeecccceeeeeccCCcEEEEeecccccccccchhhhhhhhhccccchhhcCCCccceeecccCCccccChHHhc-C
Confidence 999999988888876543 222 12222 4669999999999999888888888887765 489999999888 8
Q ss_pred CCCeEEecccCCCCccchHHHHHHHHHHHHHHHHHHHcCCC------CCCccccccCCCeEEEeecCCcceeEecC----
Q 017664 267 FKNVFAIGDITDIPEIKQGYLAQKHALVTAKNLKKLMMGRN------KGTMATYKPGYPIALVSLGRREGVAHFPF---- 336 (368)
Q Consensus 267 ~~~ifa~GD~~~~~~~~~~~~a~~~g~~aa~~i~~~l~g~~------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---- 336 (368)
.|+|||+||+... .|.+...|++.|+.+|+.+.. |.. .-+..-|+|- +..-+||.+++|+..+.-
T Consensus 331 vp~vyAvGDIl~~-kpELTPvAIqsGrlLa~Rlf~---gs~q~~dy~~V~TTVFTPL-Ey~c~GlsEE~Ai~k~g~dnie 405 (503)
T KOG4716|consen 331 VPYVYAVGDILED-KPELTPVAIQSGRLLARRLFA---GSTQLMDYDDVATTVFTPL-EYGCVGLSEEDAIEKYGEDNIE 405 (503)
T ss_pred CCceEEecceecC-CcccchhhhhhchHHHHHHhc---CcceeeeccCCceeeecch-hccccCCCHHHHHHHhCcccEE
Confidence 9999999999876 345788999999999999974 211 0111344543 334568887777654321
Q ss_pred ----------ccccCccce--eeeccccchh-HHHHHcCCCC
Q 017664 337 ----------LTISGRIPG--WIKSRDLFVG-KTRKQLGLKP 365 (368)
Q Consensus 337 ----------~~~~~~~~~--~~k~~~~~~~-~~~~~lG~~~ 365 (368)
+.++.+... ++|. ++.+ .+.+++|.|.
T Consensus 406 vfH~~f~P~E~~ipqrd~~~CY~K~--vc~r~~~qkv~G~H~ 445 (503)
T KOG4716|consen 406 VFHSYFKPLEYTIPQRDVRHCYLKA--VCERDEDQKVLGLHI 445 (503)
T ss_pred EeeccccceEEEcccccCCceEEEE--eecccCCceEEEEEE
Confidence 123444333 4554 6654 3456777664
No 64
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=99.97 E-value=4e-30 Score=262.38 Aligned_cols=279 Identities=16% Similarity=0.163 Sum_probs=183.9
Q ss_pred CCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeec-cceeeee-cccccccceeecccccCceeEEEeEEEEee
Q 017664 15 EKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITW-ASLRAVV-EPSFAVRSVINHGDYLSNVKIVVSTAVSIT 91 (368)
Q Consensus 15 ~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (368)
+.++|+|||||||||+||.+|+ +|++|+|+|+.+..|+.. ..+.... ...+.........+ .++++....++..+
T Consensus 429 ~~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~GG~l~~gip~~rl~~e~~~~~~~~l~~--~Gv~~~~~~~vg~~ 506 (1006)
T PRK12775 429 KLGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVGGVLQYGIPSFRLPRDIIDREVQRLVD--IGVKIETNKVIGKT 506 (1006)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCcceeeccCCccCCCHHHHHHHHHHHHH--CCCEEEeCCccCCc
Confidence 4679999999999999999997 599999999998776321 1111110 11111111111111 15666555433211
Q ss_pred ccEEEecCCe-EEEecEEEEecCCC-CC---CCCchHHHHHHHHHHHHH---------------HhcCCeEEEEcCchhH
Q 017664 92 DTEVVTAGGQ-TFVYDYVVVATGHV-ES---VPKSRTERLSQYEKDFEK---------------VKSANSVLIVGGGPTG 151 (368)
Q Consensus 92 ~~~v~~~~g~-~~~~d~lvlAtG~~-~~---~p~~~~~~~~~~~~~~~~---------------~~~~~~v~VvG~g~~~ 151 (368)
+...+.. ...||+||||||+. |. +|+.+..++.+...++.. ...+++|+|||+|++|
T Consensus 507 ---~~~~~l~~~~~yDaViIATGa~~pr~l~IpG~~l~gV~~a~~fL~~~~~~~~~~~~~~~~~~~~Gk~VvVIGgG~tA 583 (1006)
T PRK12775 507 ---FTVPQLMNDKGFDAVFLGVGAGAPTFLGIPGEFAGQVYSANEFLTRVNLMGGDKFPFLDTPISLGKSVVVIGAGNTA 583 (1006)
T ss_pred ---cCHHHHhhccCCCEEEEecCCCCCCCCCCCCcCCCCcEEHHHHHHHHHhcCccccccccCCccCCCEEEEECCcHHH
Confidence 1111111 24699999999995 54 444332333222222211 2357999999999999
Q ss_pred HHHHHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHcCCcEEEecceeeecccC-CC---eEEc---------C
Q 017664 152 VELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVTLNTIS-DG---LIET---------S 218 (368)
Q Consensus 152 ~e~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~-~~---~v~~---------~ 218 (368)
+|+|..+.+ .....|+++.+.... .++ .. ....+.+++.||++++++.+.++..+ ++ .+++ .
T Consensus 584 ~D~A~~a~r-lGa~~Vtiv~rr~~~--em~-a~-~~e~~~a~eeGI~~~~~~~p~~i~~~~~G~v~~v~~~~~~l~~~d~ 658 (1006)
T PRK12775 584 MDCLRVAKR-LGAPTVRCVYRRSEA--EAP-AR-IEEIRHAKEEGIDFFFLHSPVEIYVDAEGSVRGMKVEEMELGEPDE 658 (1006)
T ss_pred HHHHHHHHH-cCCCEEEEEeecCcc--cCC-CC-HHHHHHHHhCCCEEEecCCcEEEEeCCCCeEEEEEEEEEEecccCC
Confidence 999887764 333468888876432 111 11 22235677889999999998888643 33 2221 1
Q ss_pred --------CC--cEEecCEEEEccCCCCCchhhhccccccccCCCCcEEeCC-----CeeecCCCCeEEecccCCCCccc
Q 017664 219 --------SG--ETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDE-----NLRVRGFKNVFAIGDITDIPEIK 283 (368)
Q Consensus 219 --------~g--~~i~~d~vi~a~G~~p~~~~~~~~~l~~~~~~~g~i~vd~-----~~~~~~~~~ifa~GD~~~~~~~~ 283 (368)
+| .++++|.||+|+|+.|+..++... .++.++++|.+.+|+ +++| +.|+|||+|||+..+.
T Consensus 659 ~Gr~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~~~~-~gl~l~~~G~I~vd~~~v~~~~~T-s~pgVFAaGDv~~G~~-- 734 (1006)
T PRK12775 659 KGRRKPMPTGEFKDLECDTVIYALGTKANPIITQST-PGLALNKWGNIAADDGKLESTQST-NLPGVFAGGDIVTGGA-- 734 (1006)
T ss_pred CCCccccCCCceEEEEcCEEEECCCcCCChhhhhcc-CCcccCCCCcEEeCCCccccCcCC-CCCCEEEecCcCCCcc--
Confidence 12 269999999999999998765532 123567789999997 6777 8999999999997643
Q ss_pred hHHHHHHHHHHHHHHHHHHHcCCC
Q 017664 284 QGYLAQKHALVTAKNLKKLMMGRN 307 (368)
Q Consensus 284 ~~~~a~~~g~~aa~~i~~~l~g~~ 307 (368)
+...|+.+|+.||.+|.++|.++.
T Consensus 735 ~vv~Ai~~Gr~AA~~I~~~L~~~~ 758 (1006)
T PRK12775 735 TVILAMGAGRRAARSIATYLRLGK 758 (1006)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCC
Confidence 788999999999999999998764
No 65
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=99.97 E-value=9.3e-30 Score=251.99 Aligned_cols=274 Identities=16% Similarity=0.179 Sum_probs=180.5
Q ss_pred CCCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeeccceeeeec-ccccccceeecccccC--ceeEEEeEEEE
Q 017664 14 VEKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITWASLRAVVE-PSFAVRSVINHGDYLS--NVKIVVSTAVS 89 (368)
Q Consensus 14 ~~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 89 (368)
.+.++|+|||||||||++|..|+ .|++|+|+|+.+.+|+.+. ..+. ..+....+....+++. ++++.....+.
T Consensus 325 ~~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~---~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~ 401 (654)
T PRK12769 325 KSDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLT---FGIPAFKLDKSLLARRREIFSAMGIEFELNCEVG 401 (654)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceee---ecCCCccCCHHHHHHHHHHHHHCCeEEECCCEeC
Confidence 35689999999999999999998 4999999999987764321 1110 0111111111111111 44544332221
Q ss_pred eeccEEEecCCeEEEecEEEEecCCCC----CCCCchHHHHHHHH----HHHH-----------H--HhcCCeEEEEcCc
Q 017664 90 ITDTEVVTAGGQTFVYDYVVVATGHVE----SVPKSRTERLSQYE----KDFE-----------K--VKSANSVLIVGGG 148 (368)
Q Consensus 90 ~~~~~v~~~~g~~~~~d~lvlAtG~~~----~~p~~~~~~~~~~~----~~~~-----------~--~~~~~~v~VvG~g 148 (368)
.+ +...+ ....||.|++|||+.. .+|+....++.... .... . ...+++++|||+|
T Consensus 402 ~~---i~~~~-~~~~~DavilAtGa~~~~~l~i~g~~~~Gv~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG 477 (654)
T PRK12769 402 KD---ISLES-LLEDYDAVFVGVGTYRSMKAGLPNEDAPGVYDALPFLIANTKQVMGLEELPEEPFINTAGLNVVVLGGG 477 (654)
T ss_pred Cc---CCHHH-HHhcCCEEEEeCCCCCCCCCCCCCCCCCCeEEhHHHHHHHHhhhccCccccccccccCCCCeEEEECCc
Confidence 11 11111 1246999999999862 34443322221110 0000 0 1246899999999
Q ss_pred hhHHHHHHHHhhhCCCCeEEEEecCccc-ccccCchhHHHHHHHHHcCCcEEEecceeeecccC-CC---eEEc------
Q 017664 149 PTGVELAGEIAVDFPDKKVILVHRGPKL-LEFVGSRASQIALDWLTSKKVEVILNQSVTLNTIS-DG---LIET------ 217 (368)
Q Consensus 149 ~~~~e~a~~l~~~~~~~~v~~i~~~~~~-l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~-~~---~v~~------ 217 (368)
++|+|+|..+.+ ....+|+++++++.. ++. .....+.+++.||++++++.+.++..+ ++ .+++
T Consensus 478 ~~a~d~A~~a~r-~ga~~Vt~i~~~~~~~~~~-----~~~e~~~~~~~Gv~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~ 551 (654)
T PRK12769 478 DTAMDCVRTALR-HGASNVTCAYRRDEANMPG-----SKKEVKNAREEGANFEFNVQPVALELNEQGHVCGIRFLRTRLG 551 (654)
T ss_pred HHHHHHHHHHHH-cCCCeEEEeEecCCCCCCC-----CHHHHHHHHHcCCeEEeccCcEEEEECCCCeEEEEEEEEEEec
Confidence 999999987764 334579999887553 222 223446688899999999988887643 23 2222
Q ss_pred ---CCC-----------cEEecCEEEEccCCCCCc-hhhhccccccccCCCCcEEeCC----CeeecCCCCeEEecccCC
Q 017664 218 ---SSG-----------ETIDTDCHFMCTGKAMAS-SWLRETILKDSLDGRGRLMVDE----NLRVRGFKNVFAIGDITD 278 (368)
Q Consensus 218 ---~~g-----------~~i~~d~vi~a~G~~p~~-~~~~~~~l~~~~~~~g~i~vd~----~~~~~~~~~ifa~GD~~~ 278 (368)
.+| .++++|.||+|+|+.|+. .++...++ .++++|.+.+|+ ++|| +.|+|||+||++.
T Consensus 552 ~~~~~G~~~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~~~~~gl--~~~~~G~i~vd~~~~~~~~T-s~~gVfAaGD~~~ 628 (654)
T PRK12769 552 EPDAQGRRRPVPIPGSEFVMPADAVIMAFGFNPHGMPWLESHGV--TVDKWGRIIADVESQYRYQT-SNPKIFAGGDAVR 628 (654)
T ss_pred CcCCCCCCcceeCCCceEEEECCEEEECccCCCCccccccccCC--cCCCCCCEEeCCCcccCccc-CCCCEEEcCCcCC
Confidence 122 269999999999999984 45555444 678889999986 4788 8999999999997
Q ss_pred CCccchHHHHHHHHHHHHHHHHHHHcC
Q 017664 279 IPEIKQGYLAQKHALVTAKNLKKLMMG 305 (368)
Q Consensus 279 ~~~~~~~~~a~~~g~~aa~~i~~~l~g 305 (368)
.+. +...|+.+|+.||++|.++|.+
T Consensus 629 g~~--~vv~Ai~~Gr~AA~~I~~~L~~ 653 (654)
T PRK12769 629 GAD--LVVTAMAEGRHAAQGIIDWLGV 653 (654)
T ss_pred CCc--HHHHHHHHHHHHHHHHHHHhCc
Confidence 654 7889999999999999998865
No 66
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=99.97 E-value=3.3e-29 Score=238.45 Aligned_cols=271 Identities=16% Similarity=0.172 Sum_probs=179.2
Q ss_pred CCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeeccceeeeecc-cccccceeeccccc--CceeEEEeEEEEe
Q 017664 15 EKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITWASLRAVVEP-SFAVRSVINHGDYL--SNVKIVVSTAVSI 90 (368)
Q Consensus 15 ~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 90 (368)
+.++|+||||||+||++|..|+ +|++|+++|+.+.+++... ..+.. ......+....+++ .++++.....+..
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~---~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~~ 216 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLT---FGIPSFKLDKAVLSRRREIFTAMGIEFHLNCEVGR 216 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceee---ecCccccCCHHHHHHHHHHHHHCCCEEECCCEeCC
Confidence 5689999999999999999998 5999999999987763221 11100 01111111111111 1455443322111
Q ss_pred eccEEEecCCeEEEecEEEEecCCCC----CCCCchHHHHHHHHHHHH-----------------HHhcCCeEEEEcCch
Q 017664 91 TDTEVVTAGGQTFVYDYVVVATGHVE----SVPKSRTERLSQYEKDFE-----------------KVKSANSVLIVGGGP 149 (368)
Q Consensus 91 ~~~~v~~~~g~~~~~d~lvlAtG~~~----~~p~~~~~~~~~~~~~~~-----------------~~~~~~~v~VvG~g~ 149 (368)
.+... .....||.||+|||+.+ .+|+.+..++.+...+.. ....+++++|+|+|+
T Consensus 217 ---~~~~~-~~~~~~D~vilAtGa~~~~~~~i~g~~~~gV~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~ 292 (467)
T TIGR01318 217 ---DISLD-DLLEDYDAVFLGVGTYRSMRGGLPGEDAPGVLQALPFLIANTRQLMGLPESPEEPLIDVEGKRVVVLGGGD 292 (467)
T ss_pred ---ccCHH-HHHhcCCEEEEEeCCCCCCcCCCCCcCCCCcEEHHHHHHHHHHHhcCCCccccccccccCCCEEEEECCcH
Confidence 11111 12247999999999984 345544333222111100 012468999999999
Q ss_pred hHHHHHHHHhhhCCC-CeEEEEecCccc-ccccCchhHHHHHHHHHcCCcEEEecceeeecccCC-C---eEEc------
Q 017664 150 TGVELAGEIAVDFPD-KKVILVHRGPKL-LEFVGSRASQIALDWLTSKKVEVILNQSVTLNTISD-G---LIET------ 217 (368)
Q Consensus 150 ~~~e~a~~l~~~~~~-~~v~~i~~~~~~-l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~-~---~v~~------ 217 (368)
+|+++|..+.+ .+ .+|+++++++.. ++.. ....+.+++.||++++++.+.++..++ + .+++
T Consensus 293 ~a~d~A~~a~~--~Ga~~Vtvv~r~~~~~~~~~-----~~e~~~~~~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~ 365 (467)
T TIGR01318 293 TAMDCVRTAIR--LGAASVTCAYRRDEANMPGS-----RREVANAREEGVEFLFNVQPVYIECDEDGRVTGVGLVRTALG 365 (467)
T ss_pred HHHHHHHHHHH--cCCCeEEEEEecCcccCCCC-----HHHHHHHHhcCCEEEecCCcEEEEECCCCeEEEEEEEEEEec
Confidence 99999988774 35 579999987653 2222 223355678899999999998886532 3 1222
Q ss_pred ---CC-----------CcEEecCEEEEccCCCCCc-hhhhccccccccCCCCcEEeC----CCeeecCCCCeEEecccCC
Q 017664 218 ---SS-----------GETIDTDCHFMCTGKAMAS-SWLRETILKDSLDGRGRLMVD----ENLRVRGFKNVFAIGDITD 278 (368)
Q Consensus 218 ---~~-----------g~~i~~d~vi~a~G~~p~~-~~~~~~~l~~~~~~~g~i~vd----~~~~~~~~~~ifa~GD~~~ 278 (368)
.+ .+++++|.||+++|++|+. .++...++ .++++|++.+| ++++| +.|+||++|||+.
T Consensus 366 ~~~~~g~~~~~~~~g~~~~i~~D~Vi~a~G~~p~~~~~~~~~gl--~~~~~g~i~vd~~~~~~~~T-~~~gVfa~GD~~~ 442 (467)
T TIGR01318 366 EPDADGRRRPVPVAGSEFVLPADVVIMAFGFQPHAMPWLAGHGI--TLDSWGRIITGDVSYLPYQT-TNPKIFAGGDAVR 442 (467)
T ss_pred ccCCCCCccceecCCceEEEECCEEEECCcCCCCccccccccCc--cCCCCCCEEeCCccccCccC-CCCCEEEECCcCC
Confidence 11 2379999999999999984 45554444 66778999999 57887 7999999999997
Q ss_pred CCccchHHHHHHHHHHHHHHHHHHHc
Q 017664 279 IPEIKQGYLAQKHALVTAKNLKKLMM 304 (368)
Q Consensus 279 ~~~~~~~~~a~~~g~~aa~~i~~~l~ 304 (368)
.+. +...|+.+|+.||.+|.++|.
T Consensus 443 ~~~--~~~~Ai~~G~~aA~~i~~~L~ 466 (467)
T TIGR01318 443 GAD--LVVTAVAEGRQAAQGILDWLG 466 (467)
T ss_pred Ccc--HHHHHHHHHHHHHHHHHHHhc
Confidence 543 678999999999999998763
No 67
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=99.97 E-value=6.5e-29 Score=237.31 Aligned_cols=280 Identities=18% Similarity=0.204 Sum_probs=177.9
Q ss_pred CCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeecc-ceeeeecccccccceeeccccc--CceeEEEeEEEEe
Q 017664 15 EKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITWA-SLRAVVEPSFAVRSVINHGDYL--SNVKIVVSTAVSI 90 (368)
Q Consensus 15 ~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 90 (368)
..++|+||||||+|+++|..|+ +|++|+|+|+.+..++... .+... ...........+++ .++++.....+..
T Consensus 142 ~~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~gG~l~~gip~~---~~~~~~~~~~~~~~~~~Gv~~~~~~~v~~ 218 (485)
T TIGR01317 142 TGKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGGLLMYGIPNM---KLDKAIVDRRIDLLSAEGIDFVTNTEIGV 218 (485)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCCCceeeccCCCc---cCCHHHHHHHHHHHHhCCCEEECCCEeCC
Confidence 4579999999999999999998 5999999999987652211 11100 00111111111111 1566554443321
Q ss_pred eccEEEecCCeEEEecEEEEecCCC-CC---CCCchHHHHHHHHHHHH----------------HHhcCCeEEEEcCchh
Q 017664 91 TDTEVVTAGGQTFVYDYVVVATGHV-ES---VPKSRTERLSQYEKDFE----------------KVKSANSVLIVGGGPT 150 (368)
Q Consensus 91 ~~~~v~~~~g~~~~~d~lvlAtG~~-~~---~p~~~~~~~~~~~~~~~----------------~~~~~~~v~VvG~g~~ 150 (368)
+ +. .+.....||.|++|||+. |. +|+.+...+.....+.. ....+++++|||+|++
T Consensus 219 ~---~~-~~~~~~~~d~VilAtGa~~~~~l~i~G~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~~~gk~VvViGgG~~ 294 (485)
T TIGR01317 219 D---IS-ADELKEQFDAVVLAGGATKPRDLPIPGRELKGIHYAMEFLPSATKALLGKDFKDIIFIKAKGKKVVVIGGGDT 294 (485)
T ss_pred c---cC-HHHHHhhCCEEEEccCCCCCCcCCCCCcCCCCcEeHHHHHHHHhhhhccccccccccccCCCCEEEEECCcHH
Confidence 1 11 112235799999999998 54 44433222222111110 0135789999999999
Q ss_pred HHHHHHHHhhhCCCCeEEEEecCcccccccC-----ch------hHHHHHHHHHcCCcEE-EecceeeecccCC-C---e
Q 017664 151 GVELAGEIAVDFPDKKVILVHRGPKLLEFVG-----SR------ASQIALDWLTSKKVEV-ILNQSVTLNTISD-G---L 214 (368)
Q Consensus 151 ~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~~-----~~------~~~~~~~~l~~~gv~i-~~~~~v~~i~~~~-~---~ 214 (368)
|+|+|..+.+ ....+|+++++.+..+.... +. ......+.++..|+.+ ++++.+.++..++ + .
T Consensus 295 g~d~a~~a~~-~ga~~V~vv~~~~~~~~~~~~~~~~~~~~~~~e~~~a~~e~~~~~gv~~~~~~~~~~~i~~~~~g~v~~ 373 (485)
T TIGR01317 295 GADCVGTSLR-HGAASVHQFEIMPKPPEARAKDNPWPEWPRVYRVDYAHEEAAAHYGRDPREYSILTKEFIGDDEGKVTA 373 (485)
T ss_pred HHHHHHHHHH-cCCCEEEEEEecCCChhhcccccCCCccchhhhhHHHHHhhhhhcCccceEEecCcEEEEEcCCCeEEE
Confidence 9999877664 35578999987765443111 11 1122333344456654 4566666665432 2 2
Q ss_pred EEc--------CCC-----------cEEecCEEEEccCCC-CCchhhhccccccccCCCCcEEe-CCCeeecCCCCeEEe
Q 017664 215 IET--------SSG-----------ETIDTDCHFMCTGKA-MASSWLRETILKDSLDGRGRLMV-DENLRVRGFKNVFAI 273 (368)
Q Consensus 215 v~~--------~~g-----------~~i~~d~vi~a~G~~-p~~~~~~~~~l~~~~~~~g~i~v-d~~~~~~~~~~ifa~ 273 (368)
+.+ ++| .++++|.||+++|+. |+.+++...++ .++++|++.+ |++++| +.|+|||+
T Consensus 374 v~~~~~~~~~~~~Gr~~p~~~~g~~~~i~~D~Vi~AiG~~~p~~~~~~~~gl--~~~~~G~i~~~~~~~~T-s~~gVfAa 450 (485)
T TIGR01317 374 LRTVRVEWKKSQDGKWQFVEIPGSEEVFEADLVLLAMGFVGPEQILLDDFGV--KKTRRGNISAGYDDYST-SIPGVFAA 450 (485)
T ss_pred EEEEEEEeccCCCCCccceecCCceEEEECCEEEEccCcCCCccccccccCc--ccCCCCCEEecCCCceE-CCCCEEEe
Confidence 221 123 279999999999986 88888776655 5677888855 567888 89999999
Q ss_pred cccCCCCccchHHHHHHHHHHHHHHHHHHHcCCC
Q 017664 274 GDITDIPEIKQGYLAQKHALVTAKNLKKLMMGRN 307 (368)
Q Consensus 274 GD~~~~~~~~~~~~a~~~g~~aa~~i~~~l~g~~ 307 (368)
|||+..+. ++..|+.+|+.||.+|.++|.|..
T Consensus 451 GD~~~g~~--~~~~Av~~G~~AA~~i~~~L~g~~ 482 (485)
T TIGR01317 451 GDCRRGQS--LIVWAINEGRKAAAAVDRYLMGSS 482 (485)
T ss_pred eccCCCcH--HHHHHHHHHHHHHHHHHHHHhcCC
Confidence 99997543 778899999999999999998764
No 68
>PRK13984 putative oxidoreductase; Provisional
Probab=99.96 E-value=2.7e-28 Score=240.18 Aligned_cols=278 Identities=18% Similarity=0.179 Sum_probs=176.3
Q ss_pred CCCCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeecc-ceeeeecccccccceeeccccc--CceeEEEeEEE
Q 017664 13 LVEKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITWA-SLRAVVEPSFAVRSVINHGDYL--SNVKIVVSTAV 88 (368)
Q Consensus 13 ~~~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 88 (368)
..+.++|+|||+|+||+++|..|+ +|++|+|+|+++..++... .+... ....+......+++ .+++++....+
T Consensus 280 ~~~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~gG~~~~~i~~~---~~~~~~~~~~~~~~~~~gv~~~~~~~v 356 (604)
T PRK13984 280 EKKNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGGVMRYGIPSY---RLPDEALDKDIAFIEALGVKIHLNTRV 356 (604)
T ss_pred ccCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceEeecCCcc---cCCHHHHHHHHHHHHHCCcEEECCCEe
Confidence 345788999999999999999998 4999999999987653221 11000 01111111111111 14555443322
Q ss_pred EeeccEEEecCCeEEEecEEEEecCCC-C---CCCCchHHHHHHHHHHHHHH-----------hcCCeEEEEcCchhHHH
Q 017664 89 SITDTEVVTAGGQTFVYDYVVVATGHV-E---SVPKSRTERLSQYEKDFEKV-----------KSANSVLIVGGGPTGVE 153 (368)
Q Consensus 89 ~~~~~~v~~~~g~~~~~d~lvlAtG~~-~---~~p~~~~~~~~~~~~~~~~~-----------~~~~~v~VvG~g~~~~e 153 (368)
..+ +...+ ....||+||+|||+. | .+|+.....+.......... ..+++++|||||++|+|
T Consensus 357 ~~~---~~~~~-~~~~yD~vilAtGa~~~r~l~i~G~~~~gv~~a~~~l~~~~~~~~~~~~~~~~~k~VvVIGGG~~g~e 432 (604)
T PRK13984 357 GKD---IPLEE-LREKHDAVFLSTGFTLGRSTRIPGTDHPDVIQALPLLREIRDYLRGEGPKPKIPRSLVVIGGGNVAMD 432 (604)
T ss_pred CCc---CCHHH-HHhcCCEEEEEcCcCCCccCCCCCcCCcCeEeHHHHHHHHHhhhccCCCcCCCCCcEEEECCchHHHH
Confidence 111 11111 235799999999986 3 45554332222222221111 12689999999999999
Q ss_pred HHHHHhhhC----CCCeEEEEecCcccccccCchhHHHHHHHHHcCCcEEEecceeeecccCCC---eEEc--------C
Q 017664 154 LAGEIAVDF----PDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVTLNTISDG---LIET--------S 218 (368)
Q Consensus 154 ~a~~l~~~~----~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~---~v~~--------~ 218 (368)
+|..+.+.. ...+|+++.... ....++.. ...+.+ +.+.||++++++.+.++..+++ .+++ .
T Consensus 433 ~A~~l~r~~~~~~g~~~V~v~~~~r-~~~~~~~~-~~e~~~-~~~~GV~i~~~~~~~~i~~~~g~v~~v~~~~~~~~~~~ 509 (604)
T PRK13984 433 IARSMARLQKMEYGEVNVKVTSLER-TFEEMPAD-MEEIEE-GLEEGVVIYPGWGPMEVVIENDKVKGVKFKKCVEVFDE 509 (604)
T ss_pred HHHHHHhccccccCceEEEEecccc-CcccCCCC-HHHHHH-HHHcCCEEEeCCCCEEEEccCCEEEEEEEEEEeeccCC
Confidence 999987421 234678764321 11122222 222333 3457999999988877754443 2221 1
Q ss_pred -----------CCcEEecCEEEEccCCCCCchhhhcc-ccccccCCCCcEEeCCCeeecCCCCeEEecccCCCCccchHH
Q 017664 219 -----------SGETIDTDCHFMCTGKAMASSWLRET-ILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITDIPEIKQGY 286 (368)
Q Consensus 219 -----------~g~~i~~d~vi~a~G~~p~~~~~~~~-~l~~~~~~~g~i~vd~~~~~~~~~~ifa~GD~~~~~~~~~~~ 286 (368)
+++++++|.||+++|+.|+.+++... ...+.. .+|++.||+++|| +.|+|||+|||+..+. ..
T Consensus 510 ~G~~~~~~~~g~~~~i~aD~Vi~aiG~~p~~~~l~~~~~~~l~~-~~G~i~vd~~~~T-s~~gVfAaGD~~~~~~---~v 584 (604)
T PRK13984 510 EGRFNPKFDESDQIIVEADMVVEAIGQAPDYSYLPEELKSKLEF-VRGRILTNEYGQT-SIPWLFAGGDIVHGPD---II 584 (604)
T ss_pred CCCccceecCCceEEEECCEEEEeeCCCCChhhhhhhhccCccc-cCCeEEeCCCCcc-CCCCEEEecCcCCchH---HH
Confidence 22479999999999999998877642 112233 4688999999998 8999999999997653 46
Q ss_pred HHHHHHHHHHHHHHHHHcC
Q 017664 287 LAQKHALVTAKNLKKLMMG 305 (368)
Q Consensus 287 ~a~~~g~~aa~~i~~~l~g 305 (368)
.|+.+|+.||.+|.++|.+
T Consensus 585 ~Ai~~G~~AA~~I~~~L~~ 603 (604)
T PRK13984 585 HGVADGYWAAEGIDMYLRK 603 (604)
T ss_pred HHHHHHHHHHHHHHHHhcc
Confidence 7999999999999998865
No 69
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=99.96 E-value=6e-28 Score=238.10 Aligned_cols=275 Identities=17% Similarity=0.209 Sum_probs=179.7
Q ss_pred CCCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeeccceeeeecc-cccccceeeccccc--CceeEEEeEEEE
Q 017664 14 VEKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITWASLRAVVEP-SFAVRSVINHGDYL--SNVKIVVSTAVS 89 (368)
Q Consensus 14 ~~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~~ 89 (368)
.+.++|+||||||+||++|..|+ .|++|+|+|+++.+|+.+. ..+.+ .+....+....+++ .++++.....+.
T Consensus 308 ~~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~---~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~ 384 (639)
T PRK12809 308 PRSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLT---FGIPPFKLDKTVLSQRREIFTAMGIDFHLNCEIG 384 (639)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeee---ccCCcccCCHHHHHHHHHHHHHCCeEEEcCCccC
Confidence 35789999999999999999998 5999999999998763321 11111 11111111111111 145554333221
Q ss_pred eeccEEEecCCeEEEecEEEEecCCCC----CCCCchHHHHHHHHHHH-----------H------HHhcCCeEEEEcCc
Q 017664 90 ITDTEVVTAGGQTFVYDYVVVATGHVE----SVPKSRTERLSQYEKDF-----------E------KVKSANSVLIVGGG 148 (368)
Q Consensus 90 ~~~~~v~~~~g~~~~~d~lvlAtG~~~----~~p~~~~~~~~~~~~~~-----------~------~~~~~~~v~VvG~g 148 (368)
. .+...+ ....||.|++|||+.+ .+|+.+..++.....+. . ....+++++|+|+|
T Consensus 385 ~---~~~~~~-l~~~~DaV~latGa~~~~~~~i~g~~~~gv~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~vvViGgG 460 (639)
T PRK12809 385 R---DITFSD-LTSEYDAVFIGVGTYGMMRADLPHEDAPGVIQALPFLTAHTRQLMGLPESEEYPLTDVEGKRVVVLGGG 460 (639)
T ss_pred C---cCCHHH-HHhcCCEEEEeCCCCCCCCCCCCCCccCCcEeHHHHHHHHHHhhccCccccccccccCCCCeEEEECCc
Confidence 1 111111 2346999999999972 34443322221110000 0 11246899999999
Q ss_pred hhHHHHHHHHhhhCCCCeEEEEecCccc-ccccCchhHHHHHHHHHcCCcEEEecceeeecccCC-C---eEEc---C--
Q 017664 149 PTGVELAGEIAVDFPDKKVILVHRGPKL-LEFVGSRASQIALDWLTSKKVEVILNQSVTLNTISD-G---LIET---S-- 218 (368)
Q Consensus 149 ~~~~e~a~~l~~~~~~~~v~~i~~~~~~-l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~-~---~v~~---~-- 218 (368)
.+++++|..+.+ ....+|+++++++.. ++.. ...+ ..+++.||++++++.++++..++ + .+++ .
T Consensus 461 ~~a~d~a~~~~~-~Ga~~Vt~v~rr~~~~~~~~----~~e~-~~a~~eGv~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~ 534 (639)
T PRK12809 461 DTTMDCLRTSIR-LNAASVTCAYRRDEVSMPGS----RKEV-VNAREEGVEFQFNVQPQYIACDEDGRLTAVGLIRTAMG 534 (639)
T ss_pred HHHHHHHHHHHH-cCCCeEEEeeecCcccCCCC----HHHH-HHHHHcCCeEEeccCCEEEEECCCCeEEEEEEEEEEec
Confidence 999999987664 234589999987654 2222 1222 34677899999999998886432 3 2211 1
Q ss_pred ----CC-----------cEEecCEEEEccCCCCCc-hhhhccccccccCCCCcEEeCC----CeeecCCCCeEEecccCC
Q 017664 219 ----SG-----------ETIDTDCHFMCTGKAMAS-SWLRETILKDSLDGRGRLMVDE----NLRVRGFKNVFAIGDITD 278 (368)
Q Consensus 219 ----~g-----------~~i~~d~vi~a~G~~p~~-~~~~~~~l~~~~~~~g~i~vd~----~~~~~~~~~ifa~GD~~~ 278 (368)
+| .++++|.||+|+|+.|+. .++...++ .++++|++.+|+ ++|| +.|+|||+||++.
T Consensus 535 ~~~~~g~~~~~~~~g~~~~i~aD~Vi~AiG~~p~~~~~~~~~gl--~~~~~G~i~vd~~~~~~~~T-s~~gVfA~GD~~~ 611 (639)
T PRK12809 535 EPGPDGRRRPRPVAGSEFELPADVLIMAFGFQAHAMPWLQGSGI--KLDKWGLIQTGDVGYLPTQT-HLKKVFAGGDAVH 611 (639)
T ss_pred CcCCCCCccceecCCceEEEECCEEEECcCCCCCccccccccCc--ccCCCCCEEeCCCcccCccc-CCCCEEEcCCCCC
Confidence 12 379999999999999864 45554444 677889999986 3788 8999999999997
Q ss_pred CCccchHHHHHHHHHHHHHHHHHHHcCC
Q 017664 279 IPEIKQGYLAQKHALVTAKNLKKLMMGR 306 (368)
Q Consensus 279 ~~~~~~~~~a~~~g~~aa~~i~~~l~g~ 306 (368)
.+. +...|+.+|+.||++|.++|.+.
T Consensus 612 g~~--~vv~Ai~~Gr~AA~~i~~~l~~~ 637 (639)
T PRK12809 612 GAD--LVVTAMAAGRQAARDMLTLFDTK 637 (639)
T ss_pred Cch--HHHHHHHHHHHHHHHHHHHHhhh
Confidence 644 77899999999999999988654
No 70
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=99.95 E-value=4.2e-27 Score=229.68 Aligned_cols=277 Identities=21% Similarity=0.225 Sum_probs=179.4
Q ss_pred CCCCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeeccceeeeecc-cccccceeeccccc--CceeEEEeEEE
Q 017664 13 LVEKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITWASLRAVVEP-SFAVRSVINHGDYL--SNVKIVVSTAV 88 (368)
Q Consensus 13 ~~~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~ 88 (368)
.....+|+|||+||+||++|..|+ .|++|+++|+.+.+++.+. ..+.. .+..+......+.. .++++......
T Consensus 134 ~~~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~---~gip~~~~~~~~~~~~l~~~~~~Gv~~~~~~~~ 210 (564)
T PRK12771 134 PDTGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMR---YGIPAYRLPREVLDAEIQRILDLGVEVRLGVRV 210 (564)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeee---ecCCCccCCHHHHHHHHHHHHHCCCEEEeCCEE
Confidence 455789999999999999999997 5999999999988764321 11110 01111111100111 13444333221
Q ss_pred EeeccEEEecCCeEEEecEEEEecCCCC----CCCCchHHHHHHHHHHHH------HHhcCCeEEEEcCchhHHHHHHHH
Q 017664 89 SITDTEVVTAGGQTFVYDYVVVATGHVE----SVPKSRTERLSQYEKDFE------KVKSANSVLIVGGGPTGVELAGEI 158 (368)
Q Consensus 89 ~~~~~~v~~~~g~~~~~d~lvlAtG~~~----~~p~~~~~~~~~~~~~~~------~~~~~~~v~VvG~g~~~~e~a~~l 158 (368)
..+.. . +.....||++++|+|+.+ .+|+.............. ....+++++|+|+|.++++.+..+
T Consensus 211 ~~~~~---~-~~~~~~~D~Vi~AtG~~~~~~~~i~g~~~~gv~~~~~~l~~~~~~~~~~~gk~v~ViGgg~~a~d~a~~a 286 (564)
T PRK12771 211 GEDIT---L-EQLEGEFDAVFVAIGAQLGKRLPIPGEDAAGVLDAVDFLRAVGEGEPPFLGKRVVVIGGGNTAMDAARTA 286 (564)
T ss_pred CCcCC---H-HHHHhhCCEEEEeeCCCCCCcCCCCCCccCCcEEHHHHHHHhhccCCcCCCCCEEEECChHHHHHHHHHH
Confidence 11100 0 001235899999999973 233322211111111111 123478999999999999999876
Q ss_pred hhhCCCCeEEEEecCcccccccCchhHHHHHHHHHcCCcEEEecceeeecccCCC-e-------EEc----CCC------
Q 017664 159 AVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVTLNTISDG-L-------IET----SSG------ 220 (368)
Q Consensus 159 ~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~-~-------v~~----~~g------ 220 (368)
.+ ....+|+++++.+... ++ .....+ +.+.+.||++++++.+.++..+++ . +.. ++|
T Consensus 287 ~~-lga~~v~ii~r~~~~~--~~-~~~~~~-~~a~~~GVki~~~~~~~~i~~~~~~~~~v~~~~~~~~~~~~~g~~~~~~ 361 (564)
T PRK12771 287 RR-LGAEEVTIVYRRTRED--MP-AHDEEI-EEALREGVEINWLRTPVEIEGDENGATGLRVITVEKMELDEDGRPSPVT 361 (564)
T ss_pred HH-cCCCEEEEEEecCccc--CC-CCHHHH-HHHHHcCCEEEecCCcEEEEcCCCCEEEEEEEEEEecccCCCCCeeecC
Confidence 64 3447899998875421 11 122223 334567999999999988876542 1 111 122
Q ss_pred ---cEEecCEEEEccCCCCCchhhhc-cccccccCCCCcEEeCC-CeeecCCCCeEEecccCCCCccchHHHHHHHHHHH
Q 017664 221 ---ETIDTDCHFMCTGKAMASSWLRE-TILKDSLDGRGRLMVDE-NLRVRGFKNVFAIGDITDIPEIKQGYLAQKHALVT 295 (368)
Q Consensus 221 ---~~i~~d~vi~a~G~~p~~~~~~~-~~l~~~~~~~g~i~vd~-~~~~~~~~~ifa~GD~~~~~~~~~~~~a~~~g~~a 295 (368)
.++++|.||+|+|+.|+.+++.. .++ . +++|++.||+ +++| +.|+|||+|||+..+ +++..|+.+|+.|
T Consensus 362 g~~~~i~~D~Vi~A~G~~p~~~~~~~~~gl--~-~~~G~i~vd~~~~~t-s~~~Vfa~GD~~~g~--~~v~~Av~~G~~a 435 (564)
T PRK12771 362 GEEETLEADLVVLAIGQDIDSAGLESVPGV--E-VGRGVVQVDPNFMMT-GRPGVFAGGDMVPGP--RTVTTAIGHGKKA 435 (564)
T ss_pred CceEEEECCEEEECcCCCCchhhhhhccCc--c-cCCCCEEeCCCCccC-CCCCEEeccCcCCCc--hHHHHHHHHHHHH
Confidence 37999999999999998888774 344 4 6789999998 5555 899999999998754 4789999999999
Q ss_pred HHHHHHHHcCCC
Q 017664 296 AKNLKKLMMGRN 307 (368)
Q Consensus 296 a~~i~~~l~g~~ 307 (368)
|.+|.+.|.|+.
T Consensus 436 A~~i~~~L~g~~ 447 (564)
T PRK12771 436 ARNIDAFLGGEP 447 (564)
T ss_pred HHHHHHHHcCCC
Confidence 999999998764
No 71
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=99.95 E-value=1.6e-25 Score=211.81 Aligned_cols=279 Identities=22% Similarity=0.293 Sum_probs=206.1
Q ss_pred EEEECCChHHHHHHHHhhc---CCcEEEEcCCCceeeeccceeeeecccccc-cceeecccc--cCceeEE-EeEEEEee
Q 017664 19 VVVIGGGVGGSLLAYHIQS---FADVVLIDEKEYFEITWASLRAVVEPSFAV-RSVINHGDY--LSNVKIV-VSTAVSIT 91 (368)
Q Consensus 19 vvIIGaG~aGl~aA~~L~~---g~~v~lie~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~-~~~~~~~~ 91 (368)
++|||+|++|+++|..|++ +.+++++..++...+....+...+...... ........+ ..++... ...+..++
T Consensus 1 ivivG~g~aG~~aa~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~id 80 (415)
T COG0446 1 IVIVGGGAAGLSAATTLRRLLLAAEITLIGREPKYSYYRCPLSLYVGGGIASLEDLRYPPRFNRATGIDVRTGTEVTSID 80 (415)
T ss_pred CEEECCcHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCCCCccchHHhcccCCHHHhcccchhHHhhCCEEeeCCEEEEec
Confidence 5899999999999998763 788998888876655544433332221110 111110001 1134443 34577777
Q ss_pred c--cEEEecCCeEEEecEEEEecCCCCCCCC-------chHHHHHHHHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhC
Q 017664 92 D--TEVVTAGGQTFVYDYVVVATGHVESVPK-------SRTERLSQYEKDFEKVKSANSVLIVGGGPTGVELAGEIAVDF 162 (368)
Q Consensus 92 ~--~~v~~~~g~~~~~d~lvlAtG~~~~~p~-------~~~~~~~~~~~~~~~~~~~~~v~VvG~g~~~~e~a~~l~~~~ 162 (368)
+ +.+.+.++ .+.||+|++|||++|..++ ...................++++|+|+|+.|+++|..+.+
T Consensus 81 ~~~~~v~~~~g-~~~yd~LvlatGa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vvG~G~~gle~A~~~~~-- 157 (415)
T COG0446 81 PENKVVLLDDG-EIEYDYLVLATGARPRPPPISDWEGVVTLRLREDAEALKGGAEPPKDVVVVGAGPIGLEAAEAAAK-- 157 (415)
T ss_pred CCCCEEEECCC-cccccEEEEcCCCcccCCCccccCceEEECCHHHHHHHHHHHhccCeEEEECCcHHHHHHHHHHHH--
Confidence 5 47888888 8999999999999987764 1112233333333333336899999999999999999985
Q ss_pred CCCeEEEEecCcccccccC-chhHHHHHHHHHcCCcEEEecceeeecccCCC--e---EEcCCCcEEecCEEEEccCCCC
Q 017664 163 PDKKVILVHRGPKLLEFVG-SRASQIALDWLTSKKVEVILNQSVTLNTISDG--L---IETSSGETIDTDCHFMCTGKAM 236 (368)
Q Consensus 163 ~~~~v~~i~~~~~~l~~~~-~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~--~---v~~~~g~~i~~d~vi~a~G~~p 236 (368)
.+.+|++++..+++++..- +++...+.+.++++||++++++.+.+++...+ . +...+++.+++|.+++++|.+|
T Consensus 158 ~G~~v~l~e~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~d~~~~~~g~~p 237 (415)
T COG0446 158 RGKKVTLIEAADRLGGQLLDPEVAEELAELLEKYGVELLLGTKVVGVEGKGNTLVVERVVGIDGEEIKADLVIIGPGERP 237 (415)
T ss_pred cCCeEEEEEcccccchhhhhHHHHHHHHHHHHHCCcEEEeCCceEEEEcccCcceeeEEEEeCCcEEEeeEEEEeecccc
Confidence 5899999999999888766 88999999999999999999999999987765 1 5778888999999999999999
Q ss_pred CchhhhccccccccCCCCcEEeCCCeeecCCCCeEEecccCCCCcc--------chHHHHHHHHHHHHHHHHH
Q 017664 237 ASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITDIPEI--------KQGYLAQKHALVTAKNLKK 301 (368)
Q Consensus 237 ~~~~~~~~~l~~~~~~~g~i~vd~~~~~~~~~~ifa~GD~~~~~~~--------~~~~~a~~~g~~aa~~i~~ 301 (368)
+..+....... ....+|++.||+.+++.+.++||++|||+..+.. .....+..+++.++.++..
T Consensus 238 ~~~l~~~~~~~-~~~~~g~i~v~~~~~~~~~~~v~a~GD~~~~~~~~~~~~~~~~~~~~a~~~~~i~~~~~~~ 309 (415)
T COG0446 238 NVVLANDALPG-LALAGGAVLVDERGGTSKDPDVYAAGDVAEIPAAETGKGGRIALWAIAVAAGRIAAENIAG 309 (415)
T ss_pred cHHHHhhCccc-eeccCCCEEEccccccCCCCCEEeccceEeeecccCCceeeeechhhHhhhhHHHHHHhcc
Confidence 97666655422 3456789999999999338999999999876533 2446788899999988874
No 72
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.94 E-value=1.1e-25 Score=231.14 Aligned_cols=272 Identities=15% Similarity=0.089 Sum_probs=181.0
Q ss_pred CCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeeccceeeeecccccccceeecccc---cCceeEEE-eEEEE
Q 017664 15 EKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITWASLRAVVEPSFAVRSVINHGDY---LSNVKIVV-STAVS 89 (368)
Q Consensus 15 ~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~ 89 (368)
..+||+|||||||||+||.+|+ .|++|+|+|+++.+++.+.............+......+. +.++++.. ..+..
T Consensus 162 ~~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~v~v~~~t~V~~ 241 (985)
T TIGR01372 162 AHCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGSLLSEAETIDGKPAADWAAATVAELTAMPEVTLLPRTTAFG 241 (985)
T ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCeeeccccccCCccHHHHHHHHHHHHhcCCCcEEEcCCEEEE
Confidence 4679999999999999999997 5999999999988775442211111000000000111111 12344443 23333
Q ss_pred eecc-EE--------E--------e-cCCeEEEecEEEEecCCCCCCCC---chHHHHHHHHHHH---HH--HhcCCeEE
Q 017664 90 ITDT-EV--------V--------T-AGGQTFVYDYVVVATGHVESVPK---SRTERLSQYEKDF---EK--VKSANSVL 143 (368)
Q Consensus 90 ~~~~-~v--------~--------~-~~g~~~~~d~lvlAtG~~~~~p~---~~~~~~~~~~~~~---~~--~~~~~~v~ 143 (368)
+..+ .+ . . .....+.||+||||||+.+..|+ .+.+.+....... .. ...+++++
T Consensus 242 i~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~i~a~~VILATGa~~r~~pipG~~~pgV~~~~~~~~~l~~~~~~~gk~Vv 321 (985)
T TIGR01372 242 YYDHNTVGALERVTDHLDAPPKGVPRERLWRIRAKRVVLATGAHERPLVFANNDRPGVMLAGAARTYLNRYGVAPGKRIV 321 (985)
T ss_pred EecCCeEEEEEEeeeccccccCCccccceEEEEcCEEEEcCCCCCcCCCCCCCCCCCcEEchHHHHHHHhhCcCCCCeEE
Confidence 3221 10 0 0 01126899999999999965443 3333333222211 11 23579999
Q ss_pred EEcCchhHHHHHHHHhhhCCC-CeEEEEecCcccccccCchhHHHHHHHHHcCCcEEEecceeeecccCCC--eEEcC--
Q 017664 144 IVGGGPTGVELAGEIAVDFPD-KKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVTLNTISDG--LIETS-- 218 (368)
Q Consensus 144 VvG~g~~~~e~a~~l~~~~~~-~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~--~v~~~-- 218 (368)
|+|+|++++|+|..|.+ .+ ..|+++++.+.+ ...+.+.+++.||++++++.+.++..++. .+++.
T Consensus 322 ViG~G~~g~e~A~~L~~--~G~~vV~vv~~~~~~--------~~~l~~~L~~~GV~i~~~~~v~~i~g~~~v~~V~l~~~ 391 (985)
T TIGR01372 322 VATNNDSAYRAAADLLA--AGIAVVAIIDARADV--------SPEARAEARELGIEVLTGHVVAATEGGKRVSGVAVARN 391 (985)
T ss_pred EECCCHHHHHHHHHHHH--cCCceEEEEccCcch--------hHHHHHHHHHcCCEEEcCCeEEEEecCCcEEEEEEEec
Confidence 99999999999999985 35 567888766543 34466788999999999999998876543 34432
Q ss_pred --CCcEEecCEEEEccCCCCCchhhhccccccccCCC--CcEEeCCCeeecCCCCeEEecccCCCCccchHHHHHHHHHH
Q 017664 219 --SGETIDTDCHFMCTGKAMASSWLRETILKDSLDGR--GRLMVDENLRVRGFKNVFAIGDITDIPEIKQGYLAQKHALV 294 (368)
Q Consensus 219 --~g~~i~~d~vi~a~G~~p~~~~~~~~~l~~~~~~~--g~i~vd~~~~~~~~~~ifa~GD~~~~~~~~~~~~a~~~g~~ 294 (368)
+++++++|.|+++.|..|+.+++.+.+..+..++. +++. .++.|+||++||+++.. .+..|..+|+.
T Consensus 392 ~g~~~~i~~D~V~va~G~~Pnt~L~~~lg~~~~~~~~~~~~~~------~t~v~gVyaaGD~~g~~---~~~~A~~eG~~ 462 (985)
T TIGR01372 392 GGAGQRLEADALAVSGGWTPVVHLFSQRGGKLAWDAAIAAFLP------GDAVQGCILAGAANGLF---GLAAALADGAA 462 (985)
T ss_pred CCceEEEECCEEEEcCCcCchhHHHHhcCCCeeeccccCceec------CCCCCCeEEeeccCCcc---CHHHHHHHHHH
Confidence 45689999999999999999998877764444432 2222 23689999999999764 46779999999
Q ss_pred HHHHHHHHHcC
Q 017664 295 TAKNLKKLMMG 305 (368)
Q Consensus 295 aa~~i~~~l~g 305 (368)
||..|+..+..
T Consensus 463 Aa~~i~~~lg~ 473 (985)
T TIGR01372 463 AGAAAARAAGF 473 (985)
T ss_pred HHHHHHHHcCC
Confidence 99999987754
No 73
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=3.3e-26 Score=185.79 Aligned_cols=279 Identities=19% Similarity=0.266 Sum_probs=197.6
Q ss_pred CCCCCCcEEEECCChHHHHHHHHhhc-CCcEEEEcCCCceeeec-cceee-------------eecccccccceeecccc
Q 017664 12 GLVEKKKVVVIGGGVGGSLLAYHIQS-FADVVLIDEKEYFEITW-ASLRA-------------VVEPSFAVRSVINHGDY 76 (368)
Q Consensus 12 ~~~~~~~vvIIGaG~aGl~aA~~L~~-g~~v~lie~~~~~~~~~-~~~~~-------------~~~~~~~~~~~~~~~~~ 76 (368)
.|..+.+|+|||+|||+..||.++.+ ..+-+|+|..-.-+..+ .++.. ..++.+..+...+...|
T Consensus 4 ~~~h~e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~i~pGGQLtTTT~veNfPGFPdgi~G~~l~d~mrkqs~r~ 83 (322)
T KOG0404|consen 4 GMTHNENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANGIAPGGQLTTTTDVENFPGFPDGITGPELMDKMRKQSERF 83 (322)
T ss_pred cceeeeeEEEEccCchHHHHHHHHhhcccCceEEeeeeccCcCCCceeeeeeccccCCCCCcccccHHHHHHHHHHHHhh
Confidence 34456699999999999999998874 89999999653322211 11111 11111111111111112
Q ss_pred cCceeEEEeEEEEeecc---EEEecCCeEEEecEEEEecCCC---CCCCCch-----HHHHHHHHHH--HHHHhcCCeEE
Q 017664 77 LSNVKIVVSTAVSITDT---EVVTAGGQTFVYDYVVVATGHV---ESVPKSR-----TERLSQYEKD--FEKVKSANSVL 143 (368)
Q Consensus 77 ~~~~~~~~~~~~~~~~~---~v~~~~g~~~~~d~lvlAtG~~---~~~p~~~-----~~~~~~~~~~--~~~~~~~~~v~ 143 (368)
+.+++...+..++.. ....++.+.+.+|.+|+|||.. ..+|+.. .+.+..+.-+ ...++++|..+
T Consensus 84 --Gt~i~tEtVskv~~sskpF~l~td~~~v~~~avI~atGAsAkRl~~pg~ge~~fWqrGiSaCAVCDGaapifrnk~la 161 (322)
T KOG0404|consen 84 --GTEIITETVSKVDLSSKPFKLWTDARPVTADAVILATGASAKRLHLPGEGEGEFWQRGISACAVCDGAAPIFRNKPLA 161 (322)
T ss_pred --cceeeeeehhhccccCCCeEEEecCCceeeeeEEEecccceeeeecCCCCcchHHhcccchhhcccCcchhhcCCeeE
Confidence 677888888777743 3333467789999999999998 4567652 1223333222 22356789999
Q ss_pred EEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHH-HcCCcEEEecceeeecccCCC--------e
Q 017664 144 IVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWL-TSKKVEVILNQSVTLNTISDG--------L 214 (368)
Q Consensus 144 VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l-~~~gv~i~~~~~v~~i~~~~~--------~ 214 (368)
|||||.+++|-|..|.+ -+.+|++++|++++ +.+..++++. +..+|++++++.+.+...+.+ .
T Consensus 162 VIGGGDsA~EEA~fLtk--yaskVyii~Rrd~f------RAs~~Mq~ra~~npnI~v~~nt~~~ea~gd~~~l~~l~ikn 233 (322)
T KOG0404|consen 162 VIGGGDSAMEEALFLTK--YASKVYIIHRRDHF------RASKIMQQRAEKNPNIEVLYNTVAVEALGDGKLLNGLRIKN 233 (322)
T ss_pred EEcCcHHHHHHHHHHHh--hccEEEEEEEhhhh------hHHHHHHHHHhcCCCeEEEechhhhhhccCcccccceEEEe
Confidence 99999999999999985 47899999999987 5666676655 457999999998876665533 2
Q ss_pred EEcCCCcEEecCEEEEccCCCCCchhhhccccccccCCCCcEEeCCCeeecCCCCeEEecccCCCCccchHHHHHHHHHH
Q 017664 215 IETSSGETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITDIPEIKQGYLAQKHALV 294 (368)
Q Consensus 215 v~~~~g~~i~~d~vi~a~G~~p~~~~~~~~~l~~~~~~~g~i~vd~~~~~~~~~~ifa~GD~~~~~~~~~~~~a~~~g~~ 294 (368)
+.+.+-+.++.+-++++.|..|++.+++. .+++|++|++.+.+.--.++.|++||+||+.... -.++.+|...|.+
T Consensus 234 ~~tge~~dl~v~GlFf~IGH~Pat~~l~g---qve~d~~GYi~t~pgts~TsvpG~FAAGDVqD~k-yRQAvTaAgsGci 309 (322)
T KOG0404|consen 234 VKTGEETDLPVSGLFFAIGHSPATKFLKG---QVELDEDGYIVTRPGTSLTSVPGVFAAGDVQDKK-YRQAVTAAGSGCI 309 (322)
T ss_pred cccCcccccccceeEEEecCCchhhHhcC---ceeeccCceEEeccCcccccccceeeccccchHH-HHHHHhhhccchh
Confidence 33444468999999999999999999886 3378999999998654444899999999998753 2477788888888
Q ss_pred HHHHHHHHHc
Q 017664 295 TAKNLKKLMM 304 (368)
Q Consensus 295 aa~~i~~~l~ 304 (368)
+|...-++|.
T Consensus 310 aaldAe~yL~ 319 (322)
T KOG0404|consen 310 AALDAERYLT 319 (322)
T ss_pred hhhhHHHHhh
Confidence 8888777665
No 74
>PLN02852 ferredoxin-NADP+ reductase
Probab=99.94 E-value=1.3e-25 Score=211.56 Aligned_cols=283 Identities=15% Similarity=0.119 Sum_probs=176.7
Q ss_pred CCCCCcEEEECCChHHHHHHHHhh---cCCcEEEEcCCCceeeeccceeeeeccccccc--ceeeccccc--CceeEEEe
Q 017664 13 LVEKKKVVVIGGGVGGSLLAYHIQ---SFADVVLIDEKEYFEITWASLRAVVEPSFAVR--SVINHGDYL--SNVKIVVS 85 (368)
Q Consensus 13 ~~~~~~vvIIGaG~aGl~aA~~L~---~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~--~~~~~~~~ 85 (368)
....++|+|||||||||+||..|+ +|++|+|+|+.+..++ .++..+.+.+... ....+..++ .+++++..
T Consensus 23 ~~~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgG---lvr~gvaP~~~~~k~v~~~~~~~~~~~~v~~~~n 99 (491)
T PLN02852 23 TSEPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFG---LVRSGVAPDHPETKNVTNQFSRVATDDRVSFFGN 99 (491)
T ss_pred CCCCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcc---eEeeccCCCcchhHHHHHHHHHHHHHCCeEEEcC
Confidence 345679999999999999999986 4999999999987653 3333332332211 011111111 13454432
Q ss_pred EEEEeeccEEEecCCeEEEecEEEEecCCCC----CCCCchHHHHHHHHHH-------------HHHHhcCCeEEEEcCc
Q 017664 86 TAVSITDTEVVTAGGQTFVYDYVVVATGHVE----SVPKSRTERLSQYEKD-------------FEKVKSANSVLIVGGG 148 (368)
Q Consensus 86 ~~~~~~~~~v~~~~g~~~~~d~lvlAtG~~~----~~p~~~~~~~~~~~~~-------------~~~~~~~~~v~VvG~g 148 (368)
..+. ..+...+. ...||+||+|||+.+ .+|+.+..++.....+ ......+++++|||+|
T Consensus 100 v~vg---~dvtl~~L-~~~yDaVIlAtGa~~~~~l~IpG~d~~gV~~a~~fl~~~ng~~d~~~~~~~~~~gk~VvVIGgG 175 (491)
T PLN02852 100 VTLG---RDVSLSEL-RDLYHVVVLAYGAESDRRLGIPGEDLPGVLSAREFVWWYNGHPDCVHLPPDLKSSDTAVVLGQG 175 (491)
T ss_pred EEEC---ccccHHHH-hhhCCEEEEecCCCCCCCCCCCCCCCCCeEEHHHHHHHhhcchhhhhhhhcccCCCEEEEECCC
Confidence 2221 12333333 247999999999973 3555433222222111 1112357899999999
Q ss_pred hhHHHHHHHHhhh------------------C-CCCeEEEEecCcccc-cccCch-------------------------
Q 017664 149 PTGVELAGEIAVD------------------F-PDKKVILVHRGPKLL-EFVGSR------------------------- 183 (368)
Q Consensus 149 ~~~~e~a~~l~~~------------------~-~~~~v~~i~~~~~~l-~~~~~~------------------------- 183 (368)
++|+|+|..|.+. . .-.+|+++.|+...- ++..++
T Consensus 176 nvAlD~Ar~L~~~~~~l~~tdi~~~~l~~l~~~~~~~V~iv~RRg~~~~~ft~~Elrel~~l~~~~~~~~~~~~~~~~~~ 255 (491)
T PLN02852 176 NVALDCARILLRPTDELASTDIAEHALEALRGSSVRKVYLVGRRGPVQAACTAKELRELLGLKNVRVRIKEADLTLSPED 255 (491)
T ss_pred HHHHHHHHHHHhCccccccccccHHHHHHHhhCCCCEEEEEEcCChHhCCCCHHHHHHHhccCCCceeechhhhccccch
Confidence 9999999988642 1 235799999875310 000001
Q ss_pred ------------hHHHHHHHHHc---------CCcEEEecceeeeccc--C-CC---eEEc-------C----------C
Q 017664 184 ------------ASQIALDWLTS---------KKVEVILNQSVTLNTI--S-DG---LIET-------S----------S 219 (368)
Q Consensus 184 ------------~~~~~~~~l~~---------~gv~i~~~~~v~~i~~--~-~~---~v~~-------~----------~ 219 (368)
..+.+.+...+ +++.|++...+.+|.. + ++ .+++ . +
T Consensus 256 ~~~~~~~r~~~r~~~~l~~~a~~~~~~~~~~~~~v~~~f~~sP~ei~~~~~~~~~v~~l~~~~~~l~~~~~~g~~~~~~t 335 (491)
T PLN02852 256 EEELKASRPKRRVYELLSKAAAAGKCAPSGGQRELHFVFFRNPTRFLDSGDGNGHVAGVKLERTVLEGAAGSGKQVAVGT 335 (491)
T ss_pred hhhhccchhhHHHHHHHHHHHhhcccccCCCCceEEEEccCCCeEEEccCCCCCcEEEEEEEEeecCCCcccCCcccCCC
Confidence 11112222222 5799999998888863 1 12 2221 1 2
Q ss_pred C--cEEecCEEEEccCCC--CCchh-hhccccccccCCCCcEEeCCCeeecCCCCeEEecccCCCCccchHHHHHHHHHH
Q 017664 220 G--ETIDTDCHFMCTGKA--MASSW-LRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITDIPEIKQGYLAQKHALV 294 (368)
Q Consensus 220 g--~~i~~d~vi~a~G~~--p~~~~-~~~~~l~~~~~~~g~i~vd~~~~~~~~~~ifa~GD~~~~~~~~~~~~a~~~g~~ 294 (368)
| +++++|.||.+.|+. |...+ +... .++..+.+|++.+|+.++| +.|+|||+|||...|. ..+..++.+|+.
T Consensus 336 ge~~~i~~D~Vi~aIG~~~~p~~~l~f~~~-~gv~~n~~G~V~~d~~~~T-~ipGvyAaGDi~~Gp~-gvI~t~~~dA~~ 412 (491)
T PLN02852 336 GEFEDLPCGLVLKSIGYKSLPVDGLPFDHK-RGVVPNVHGRVLSSASGAD-TEPGLYVVGWLKRGPT-GIIGTNLTCAEE 412 (491)
T ss_pred CCEEEEECCEEEEeecCCCCCCCCCccccC-cCeeECCCceEEeCCCCcc-CCCCEEEeeeEecCCC-CeeeecHhhHHH
Confidence 3 269999999999998 44432 2221 1224567899999988887 7999999999997653 366789999999
Q ss_pred HHHHHHHHHcC
Q 017664 295 TAKNLKKLMMG 305 (368)
Q Consensus 295 aa~~i~~~l~g 305 (368)
++.+|..++..
T Consensus 413 ta~~i~~d~~~ 423 (491)
T PLN02852 413 TVASIAEDLEQ 423 (491)
T ss_pred HHHHHHHHHHc
Confidence 99999998764
No 75
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=99.94 E-value=2.4e-25 Score=189.86 Aligned_cols=314 Identities=18% Similarity=0.246 Sum_probs=207.2
Q ss_pred CCCCcEEEECCChHHHHHHHHhhc---CCcEEEEcCCCceeeecc--ceeeeecccccccceeeccccc-CceeEEEeEE
Q 017664 14 VEKKKVVVIGGGVGGSLLAYHIQS---FADVVLIDEKEYFEITWA--SLRAVVEPSFAVRSVINHGDYL-SNVKIVVSTA 87 (368)
Q Consensus 14 ~~~~~vvIIGaG~aGl~aA~~L~~---g~~v~lie~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 87 (368)
.++++++|||||.+|+++|..+.+ .-+|.|+|+.+...+.+. .....+.. + .....+..+.. .+..|+++.+
T Consensus 37 ~~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~HyYQPgfTLvGgGl~~-l-~~srr~~a~liP~~a~wi~ekv 114 (446)
T KOG3851|consen 37 RKHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAEDHYYQPGFTLVGGGLKS-L-DSSRRKQASLIPKGATWIKEKV 114 (446)
T ss_pred ccceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchhhcccCcceEEeccchhh-h-hhccCcccccccCCcHHHHHHH
Confidence 357899999999999999998864 468999999987654432 22211111 0 01111111221 3677888888
Q ss_pred EEeecc--EEEecCCeEEEecEEEEecCCC---CCCCCch-------------HHHHHHHHHHHHHHhcCCeEEEEcCch
Q 017664 88 VSITDT--EVVTAGGQTFVYDYVVVATGHV---ESVPKSR-------------TERLSQYEKDFEKVKSANSVLIVGGGP 149 (368)
Q Consensus 88 ~~~~~~--~v~~~~g~~~~~d~lvlAtG~~---~~~p~~~-------------~~~~~~~~~~~~~~~~~~~v~VvG~g~ 149 (368)
..+++. +|++.+|++|+|||+|+|+|.. ..+++.. ...++...........+.-+.-..+++
T Consensus 115 ~~f~P~~N~v~t~gg~eIsYdylviA~Giql~y~~IkGl~Eal~tP~VcSnYSpkyvdk~y~~~~~fk~GNAIfTfPntp 194 (446)
T KOG3851|consen 115 KEFNPDKNTVVTRGGEEISYDYLVIAMGIQLDYGKIKGLVEALDTPGVCSNYSPKYVDKVYKELMNFKKGNAIFTFPNTP 194 (446)
T ss_pred HhcCCCcCeEEccCCcEEeeeeEeeeeeceeccchhcChHhhccCCCcccccChHHHHHHHHHHHhccCCceEEecCCCc
Confidence 888764 8999999999999999999998 2344421 122333333444444454454444433
Q ss_pred h--------HHHHHHHHhh-hCCCCeEEEEecCcccccccCchhHHHHHHHHHcCCcEEEecceeeecccCCCe--EE-c
Q 017664 150 T--------GVELAGEIAV-DFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVTLNTISDGL--IE-T 217 (368)
Q Consensus 150 ~--------~~e~a~~l~~-~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~--v~-~ 217 (368)
+ .+-++..+.+ +....++.++....-..-+.-....+.+++..++++|++.......++..++.. ++ +
T Consensus 195 iKCAGAPQKi~yise~y~Rk~gvRd~a~iiy~Tsl~~iFgVk~Y~~AL~k~~~~rni~vn~krnLiEV~~~~~~AvFe~L 274 (446)
T KOG3851|consen 195 IKCAGAPQKIMYISESYFRKRGVRDNANIIYNTSLPTIFGVKHYADALEKVIQERNITVNYKRNLIEVRTNDRKAVFENL 274 (446)
T ss_pred cccCCCchhhhhhhHHHHHHhCccccccEEEecCccceecHHHHHHHHHHHHHhcceEeeeccceEEEeccchhhHHHhc
Confidence 2 3333333332 222335555554322111233466788889999999999988888877776652 22 2
Q ss_pred CC-C--cEEecCEEEEccCCCCCchhhhccccccccCCCCcEEeCC-CeeecCCCCeEEecccCCCCccchHHHHHHHHH
Q 017664 218 SS-G--ETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDE-NLRVRGFKNVFAIGDITDIPEIKQGYLAQKHAL 293 (368)
Q Consensus 218 ~~-g--~~i~~d~vi~a~G~~p~~~~~~~~~l~~~~~~~g~i~vd~-~~~~~~~~~ifa~GD~~~~~~~~~~~~a~~~g~ 293 (368)
++ | ++++++++.+..... .++++..+.+ .|+.||+.||+ ++|++++||||++|||.+.|..|++..+..|..
T Consensus 275 ~kPG~t~ei~yslLHv~Ppms-~pe~l~~s~~---adktGfvdVD~~TlQs~kypNVFgiGDc~n~PnsKTaAAvaaq~~ 350 (446)
T KOG3851|consen 275 DKPGVTEEIEYSLLHVTPPMS-TPEVLANSDL---ADKTGFVDVDQSTLQSKKYPNVFGIGDCMNLPNSKTAAAVAAQSP 350 (446)
T ss_pred CCCCceeEEeeeeeeccCCCC-ChhhhhcCcc---cCcccceecChhhhccccCCCceeeccccCCCchhhHHHHHhcCc
Confidence 22 5 478899988887766 3577777764 67889999996 699999999999999999999999988899999
Q ss_pred HHHHHHHHHHcCCCCCC-ccccccCCCeEEEeecCCcceeEecC
Q 017664 294 VTAKNLKKLMMGRNKGT-MATYKPGYPIALVSLGRREGVAHFPF 336 (368)
Q Consensus 294 ~aa~~i~~~l~g~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~ 336 (368)
++-+|+.+.++|+.+.. ...|+..| .++|.+ +-.+++|++
T Consensus 351 vv~~nl~~~m~g~~pt~~ydGYtSCP--lvtgy~-k~iLaeF~y 391 (446)
T KOG3851|consen 351 VVDKNLTQVMQGKRPTMKYDGYTSCP--LVTGYN-KVILAEFDY 391 (446)
T ss_pred hhhhhHHHHhcCCCcceeecCcccCc--eeeccc-eEEEEeecc
Confidence 99999999999976422 22344322 333443 345666655
No 76
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=99.92 E-value=2e-24 Score=190.33 Aligned_cols=285 Identities=21% Similarity=0.264 Sum_probs=205.5
Q ss_pred CCCCCcEEEECCChHHHHHHHHhh---cCCcEEEEcCCCceeeecccee----eeecccc------------cccceeec
Q 017664 13 LVEKKKVVVIGGGVGGSLLAYHIQ---SFADVVLIDEKEYFEITWASLR----AVVEPSF------------AVRSVINH 73 (368)
Q Consensus 13 ~~~~~~vvIIGaG~aGl~aA~~L~---~g~~v~lie~~~~~~~~~~~~~----~~~~~~~------------~~~~~~~~ 73 (368)
.+++...+|||+|.+..+++...+ .+.+|.+|..++.+.+....+. ..-++.. ....+++-
T Consensus 175 ~p~hvp~liigggtaAfaa~rai~s~da~A~vl~iseepelPYmRPPLSKELW~~~dpn~~k~lrfkqwsGkeRsiffep 254 (659)
T KOG1346|consen 175 LPKHVPYLIIGGGTAAFAAFRAIKSNDATAKVLMISEEPELPYMRPPLSKELWWYGDPNSAKKLRFKQWSGKERSIFFEP 254 (659)
T ss_pred CcccCceeEEcCCchhhhcccccccCCCCceEEeeccCccCcccCCCcchhceecCCCChhhheeecccCCccceeEecC
Confidence 345667999999999998888776 3889999988877654322111 1111100 00011111
Q ss_pred cccc-----------CceeEEEe-EEEEee--ccEEEecCCeEEEecEEEEecCCCCCCCC-ch------------HHHH
Q 017664 74 GDYL-----------SNVKIVVS-TAVSIT--DTEVVTAGGQTFVYDYVVVATGHVESVPK-SR------------TERL 126 (368)
Q Consensus 74 ~~~~-----------~~~~~~~~-~~~~~~--~~~v~~~~g~~~~~d~lvlAtG~~~~~p~-~~------------~~~~ 126 (368)
..|+ .++.+.++ .++.++ .+.|.++||.+|.||.++||||.+|.-.+ ++ ....
T Consensus 255 d~FfvspeDLp~~~nGGvAvl~G~kvvkid~~d~~V~LnDG~~I~YdkcLIATG~~Pk~l~~~~~A~~evk~kit~fr~p 334 (659)
T KOG1346|consen 255 DGFFVSPEDLPKAVNGGVAVLRGRKVVKIDEEDKKVILNDGTTIGYDKCLIATGVRPKKLQVFEEASEEVKQKITYFRYP 334 (659)
T ss_pred CcceeChhHCcccccCceEEEeccceEEeecccCeEEecCCcEeehhheeeecCcCcccchhhhhcCHHhhhheeEEecc
Confidence 1111 14555555 456666 45889999999999999999999986433 21 1123
Q ss_pred HHHHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCC--CCeEEEEecCccccc-ccCchhHHHHHHHHHcCCcEEEecc
Q 017664 127 SQYEKDFEKVKSANSVLIVGGGPTGVELAGEIAVDFP--DKKVILVHRGPKLLE-FVGSRASQIALDWLTSKKVEVILNQ 203 (368)
Q Consensus 127 ~~~~~~~~~~~~~~~v~VvG~g~~~~e~a~~l~~~~~--~~~v~~i~~~~~~l~-~~~~~~~~~~~~~l~~~gv~i~~~~ 203 (368)
.++....+.....++|.|||+|..|.|+|..|.+++. +.+|+-+......+. -++.-+++...+.+++.||.++.+.
T Consensus 335 ~DF~rlek~~aek~siTIiGnGflgSELacsl~rk~r~~g~eV~QvF~Ek~nm~kiLPeyls~wt~ekir~~GV~V~pna 414 (659)
T KOG1346|consen 335 ADFKRLEKGLAEKQSITIIGNGFLGSELACSLKRKYRNEGVEVHQVFEEKYNMEKILPEYLSQWTIEKIRKGGVDVRPNA 414 (659)
T ss_pred hHHHHHHHhhhhcceEEEEcCcchhhhHHHHHHHhhhccCcEEEEeecccCChhhhhHHHHHHHHHHHHHhcCceeccch
Confidence 4444444444556899999999999999999997665 446655544333222 3455677888889999999999999
Q ss_pred eeeecccCCC--eEEcCCCcEEecCEEEEccCCCCCchhhhccccccccCCC-CcEEeCCCeeecCCCCeEEecccCCCC
Q 017664 204 SVTLNTISDG--LIETSSGETIDTDCHFMCTGKAMASSWLRETILKDSLDGR-GRLMVDENLRVRGFKNVFAIGDITDIP 280 (368)
Q Consensus 204 ~v~~i~~~~~--~v~~~~g~~i~~d~vi~a~G~~p~~~~~~~~~l~~~~~~~-g~i~vd~~~~~~~~~~ifa~GD~~~~~ 280 (368)
.|.++....+ .+.+.||.++..|.|++|+|-.||.++....+| +.|++ |...||..|+. ..|||++||++...
T Consensus 415 ~v~sv~~~~~nl~lkL~dG~~l~tD~vVvavG~ePN~ela~~sgL--eiD~~lGGfrvnaeL~a--r~NvwvAGdaacF~ 490 (659)
T KOG1346|consen 415 KVESVRKCCKNLVLKLSDGSELRTDLVVVAVGEEPNSELAEASGL--EIDEKLGGFRVNAELKA--RENVWVAGDAACFE 490 (659)
T ss_pred hhhhhhhhccceEEEecCCCeeeeeeEEEEecCCCchhhcccccc--eeecccCcEEeeheeec--ccceeeecchhhhh
Confidence 9998877655 788999999999999999999999999999988 55665 78999999998 68999999998876
Q ss_pred ccchH-------HHHHHHHHHHHHHHHH
Q 017664 281 EIKQG-------YLAQKHALVTAKNLKK 301 (368)
Q Consensus 281 ~~~~~-------~~a~~~g~~aa~~i~~ 301 (368)
.+.++ -.|+-+||.|++|+..
T Consensus 491 D~~LGrRRVehhdhavvSGRLAGENMtg 518 (659)
T KOG1346|consen 491 DGVLGRRRVEHHDHAVVSGRLAGENMTG 518 (659)
T ss_pred cccccceeccccccceeeceeccccccc
Confidence 55444 2588899999999974
No 77
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=1.6e-25 Score=193.09 Aligned_cols=273 Identities=25% Similarity=0.318 Sum_probs=188.0
Q ss_pred CCCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeeccc---eeee------ecccccccceeecccccCceeEE
Q 017664 14 VEKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITWAS---LRAV------VEPSFAVRSVINHGDYLSNVKIV 83 (368)
Q Consensus 14 ~~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~~~---~~~~------~~~~~~~~~~~~~~~~~~~~~~~ 83 (368)
...+||+||||||||-+||.+.+ +|.+.=++-. .||+.... +..+ .++.+....-...++| .+++.
T Consensus 209 k~~yDVLvVGgGPAgaaAAiYaARKGiRTGl~ae--rfGGQvldT~~IENfIsv~~teGpkl~~ale~Hv~~Y--~vDim 284 (520)
T COG3634 209 KDAYDVLVVGGGPAGAAAAIYAARKGIRTGLVAE--RFGGQVLDTMGIENFISVPETEGPKLAAALEAHVKQY--DVDVM 284 (520)
T ss_pred cCCceEEEEcCCcchhHHHHHHHhhcchhhhhhh--hhCCeeccccchhheeccccccchHHHHHHHHHHhhc--Cchhh
Confidence 34699999999999999998765 6877655532 24433211 1111 1121111111111222 23332
Q ss_pred Ee-EEEEeec-------cEEEecCCeEEEecEEEEecCCC---CCCCCchH---HHHHHHHHHHHHHhcCCeEEEEcCch
Q 017664 84 VS-TAVSITD-------TEVVTAGGQTFVYDYVVVATGHV---ESVPKSRT---ERLSQYEKDFEKVKSANSVLIVGGGP 149 (368)
Q Consensus 84 ~~-~~~~~~~-------~~v~~~~g~~~~~d~lvlAtG~~---~~~p~~~~---~~~~~~~~~~~~~~~~~~v~VvG~g~ 149 (368)
+. ++..+.+ ..+.+.+|..++.+.+|+|||.+ .++|+.+. +.+..+..+.-.+.++|+|.|||||+
T Consensus 285 n~qra~~l~~a~~~~~l~ev~l~nGavLkaktvIlstGArWRn~nvPGE~e~rnKGVayCPHCDGPLF~gK~VAVIGGGN 364 (520)
T COG3634 285 NLQRASKLEPAAVEGGLIEVELANGAVLKARTVILATGARWRNMNVPGEDEYRNKGVAYCPHCDGPLFKGKRVAVIGGGN 364 (520)
T ss_pred hhhhhhcceecCCCCccEEEEecCCceeccceEEEecCcchhcCCCCchHHHhhCCeeeCCCCCCcccCCceEEEECCCc
Confidence 21 2223322 26888999999999999999998 57887542 33444445556678899999999999
Q ss_pred hHHHHHHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHc-CCcEEEecceeeecccCCC---eEEc---CCC--
Q 017664 150 TGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTS-KKVEVILNQSVTLNTISDG---LIET---SSG-- 220 (368)
Q Consensus 150 ~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~-~gv~i~~~~~v~~i~~~~~---~v~~---~~g-- 220 (368)
+|+|.|..|+ -.-..|++++-.+.+ ..-.-+++.++. .+++++++..-++|..++. ++.. .+|
T Consensus 365 SGvEAAIDLA--Giv~hVtllEF~~eL------kAD~VLq~kl~sl~Nv~ii~na~Ttei~Gdg~kV~Gl~Y~dr~sge~ 436 (520)
T COG3634 365 SGVEAAIDLA--GIVEHVTLLEFAPEL------KADAVLQDKLRSLPNVTIITNAQTTEVKGDGDKVTGLEYRDRVSGEE 436 (520)
T ss_pred chHHHHHhHH--hhhheeeeeecchhh------hhHHHHHHHHhcCCCcEEEecceeeEEecCCceecceEEEeccCCce
Confidence 9999999998 345678888744433 223445566655 6899999999998888744 2222 223
Q ss_pred cEEecCEEEEccCCCCCchhhhccccccccCCCCcEEeCCCeeecCCCCeEEecccCCCCccchHHHHHHHHHHHHHHHH
Q 017664 221 ETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITDIPEIKQGYLAQKHALVTAKNLK 300 (368)
Q Consensus 221 ~~i~~d~vi~a~G~~p~~~~~~~~~l~~~~~~~g~i~vd~~~~~~~~~~ifa~GD~~~~~~~~~~~~a~~~g~~aa~~i~ 300 (368)
..++-+-|++-.|..||++|++.. + +++++|-|.||....| +.|+|||+|||...|. |+...|+-+|..|+-+..
T Consensus 437 ~~l~LeGvFVqIGL~PNT~WLkg~-v--el~~rGEIivD~~g~T-svpGvFAAGD~T~~~y-KQIIIamG~GA~AaL~AF 511 (520)
T COG3634 437 HHLELEGVFVQIGLLPNTEWLKGA-V--ELNRRGEIIVDARGET-NVPGVFAAGDCTTVPY-KQIIIAMGEGAKASLSAF 511 (520)
T ss_pred eEEEeeeeEEEEecccChhHhhch-h--hcCcCccEEEecCCCc-CCCceeecCcccCCcc-ceEEEEecCcchhhhhhh
Confidence 367888999999999999999876 3 7889999999999999 8999999999998754 466667777777776665
Q ss_pred HHH
Q 017664 301 KLM 303 (368)
Q Consensus 301 ~~l 303 (368)
.+|
T Consensus 512 DyL 514 (520)
T COG3634 512 DYL 514 (520)
T ss_pred hhh
Confidence 554
No 78
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=99.92 E-value=3.3e-24 Score=202.80 Aligned_cols=273 Identities=18% Similarity=0.219 Sum_probs=166.3
Q ss_pred cCCCCCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeeccceeee-----------------ec----------
Q 017664 11 AGLVEKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITWASLRAV-----------------VE---------- 62 (368)
Q Consensus 11 ~~~~~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~~~~~~~-----------------~~---------- 62 (368)
+.+...++|+|||||+|||+||++|+ .|++|+|+|+++.+|+.|.--... ..
T Consensus 5 ~~~~~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W~~~~~~~~d~~~~~~~~~~~~s~~Y~~L~tn~p~~ 84 (461)
T PLN02172 5 QNPINSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVHSSVYESLRTNLPRE 84 (461)
T ss_pred ccCCCCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcceeecCCCcCCCccccCCCCcccchhhhhhhhccCCHh
Confidence 45566789999999999999999997 599999999999988777321100 00
Q ss_pred ----cccccc-----------ceeecc---cccC------cee--E-EEeEEEEeecc----EEEecCC----eEEEecE
Q 017664 63 ----PSFAVR-----------SVINHG---DYLS------NVK--I-VVSTAVSITDT----EVVTAGG----QTFVYDY 107 (368)
Q Consensus 63 ----~~~~~~-----------~~~~~~---~~~~------~~~--~-~~~~~~~~~~~----~v~~~~g----~~~~~d~ 107 (368)
.+++.. .+.... +|+. ++. + .+.+|..+++. .|.+.++ .+..||+
T Consensus 85 ~m~f~dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~~~w~V~~~~~~~~~~~~~~d~ 164 (461)
T PLN02172 85 CMGYRDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVDGKWRVQSKNSGGFSKDEIFDA 164 (461)
T ss_pred hccCCCCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecCCeEEEEEEcCCCceEEEEcCE
Confidence 001000 000000 0110 222 1 34566666542 4544322 2467999
Q ss_pred EEEecCC--CCCCCCchHH------HHHHHHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccc
Q 017664 108 VVVATGH--VESVPKSRTE------RLSQYEKDFEKVKSANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEF 179 (368)
Q Consensus 108 lvlAtG~--~~~~p~~~~~------~~~~~~~~~~~~~~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~ 179 (368)
||+|||. .|.+|.+++. .++..........++++|+|||+|.+|+|+|.+|.. .+++|++++|+.....
T Consensus 165 VIvAtG~~~~P~~P~ipG~~~f~G~~iHs~~yr~~~~~~gk~VvVVG~G~Sg~diA~~L~~--~a~~V~l~~r~~~~~~- 241 (461)
T PLN02172 165 VVVCNGHYTEPNVAHIPGIKSWPGKQIHSHNYRVPDPFKNEVVVVIGNFASGADISRDIAK--VAKEVHIASRASESDT- 241 (461)
T ss_pred EEEeccCCCCCcCCCCCCcccCCceEEEecccCCccccCCCEEEEECCCcCHHHHHHHHHH--hCCeEEEEEeeccccc-
Confidence 9999994 5776665421 112221112233468999999999999999999995 4789999998764311
Q ss_pred cCchhHHHHHHHHHcCCcEEEecceeeecccCCCeEEcCCCcEEecCEEEEccCCCCCchhhhccccccccCCCCcEEeC
Q 017664 180 VGSRASQIALDWLTSKKVEVILNQSVTLNTISDGLIETSSGETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVD 259 (368)
Q Consensus 180 ~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~v~~~~g~~i~~d~vi~a~G~~p~~~~~~~~~l~~~~~~~g~i~vd 259 (368)
.+.+......+..+..|..+. .++.|++.||+.+++|.||+|||++++.+|+...+. +..+.+.-...-
T Consensus 242 ---------~~~~~~~~~~v~~~~~I~~~~-~~g~V~f~DG~~~~~D~Ii~~TGy~~~~pfL~~~~~-i~v~~~~v~~Ly 310 (461)
T PLN02172 242 ---------YEKLPVPQNNLWMHSEIDTAH-EDGSIVFKNGKVVYADTIVHCTGYKYHFPFLETNGY-MRIDENRVEPLY 310 (461)
T ss_pred ---------cccCcCCCCceEECCccccee-cCCeEEECCCCCccCCEEEECCcCCccccccCcccc-eeeCCCcchhhH
Confidence 001111223445556665443 234799999999999999999999999988764321 112211100111
Q ss_pred CCeeecC-CCCeEEecccCCCCccchHHHHHHHHHHHHHHHH
Q 017664 260 ENLRVRG-FKNVFAIGDITDIPEIKQGYLAQKHALVTAKNLK 300 (368)
Q Consensus 260 ~~~~~~~-~~~ifa~GD~~~~~~~~~~~~a~~~g~~aa~~i~ 300 (368)
++.-... .|+++.+|-..... ....+..|++.+|+-+.
T Consensus 311 ~~~f~~~~~p~LafiG~~~~~~---~f~~~E~Qa~~~a~v~s 349 (461)
T PLN02172 311 KHVFPPALAPGLSFIGLPAMGI---QFVMFEIQSKWVAAVLS 349 (461)
T ss_pred HhhcCCCCCCcEEEEecccccc---CchhHHHHHHHHHHHHc
Confidence 1211223 48999999764332 23567788888777665
No 79
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=99.85 E-value=2.8e-20 Score=184.08 Aligned_cols=267 Identities=14% Similarity=0.106 Sum_probs=152.5
Q ss_pred CCCCCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeee---------ccc---------------e-eeeecccc
Q 017664 12 GLVEKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEIT---------WAS---------------L-RAVVEPSF 65 (368)
Q Consensus 12 ~~~~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~---------~~~---------------~-~~~~~~~~ 65 (368)
...+.++|+|||||||||+||++|+ +|++|+++|+.+..+.+ |.. + ...+...+
T Consensus 379 ~~~tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~i~gl~~~~~~~i~~~~~~~~~L~er~p~~~GG~~~yGIp~R~ 458 (1028)
T PRK06567 379 KEPTNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLKITLLPFDVHKPIKFWHEYKNLLSERMPRGFGGVAEYGITVRW 458 (1028)
T ss_pred CCCCCCeEEEECcCHHHHHHHHHHHhCCCeEEEEccccccccccccccccchhhhhccchhhhccccCCcccccCccccc
Confidence 3456789999999999999999998 59999999987532221 110 0 00000001
Q ss_pred cccceeeccccc---CceeEEEeEEEEeeccEEEecCCeEEEecEEEEecCC-CCC---CCCchHHHHHHHHHHHHHH--
Q 017664 66 AVRSVINHGDYL---SNVKIVVSTAVSITDTEVVTAGGQTFVYDYVVVATGH-VES---VPKSRTERLSQYEKDFEKV-- 136 (368)
Q Consensus 66 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~v~~~~g~~~~~d~lvlAtG~-~~~---~p~~~~~~~~~~~~~~~~~-- 136 (368)
....+......+ .++++..+.....+ +...+-....||+|+||||+ .|. +|+.+..++.+...+....
T Consensus 459 ~k~~l~~i~~il~~g~~v~~~~gv~lG~d---it~edl~~~gyDAV~IATGA~kpr~L~IPGeda~GV~sA~DfL~~l~~ 535 (1028)
T PRK06567 459 DKNNLDILRLILERNNNFKYYDGVALDFN---ITKEQAFDLGFDHIAFCIGAGQPKVLDIENFEAKGVKTASDFLMTLQS 535 (1028)
T ss_pred hHHHHHHHHHHHhcCCceEEECCeEECcc---CCHHHHhhcCCCEEEEeCCCCCCCCCCCCCccCCCeEEHHHHHHHHhh
Confidence 100000000000 02233222221111 11222234679999999999 454 4444333333333322221
Q ss_pred ------------hcCCeEEEEcCchhHHHHHHHHhhh-------------------------------------------
Q 017664 137 ------------KSANSVLIVGGGPTGVELAGEIAVD------------------------------------------- 161 (368)
Q Consensus 137 ------------~~~~~v~VvG~g~~~~e~a~~l~~~------------------------------------------- 161 (368)
..+++|+|||||++|+|+|......
T Consensus 536 ~~~~~~~~~~~~~~Gk~VVVIGGGnTAmD~ArtAlr~~~l~ve~~l~~~~~~~~~~~d~eia~~f~~h~r~~g~~~~~~~ 615 (1028)
T PRK06567 536 GGAFLKNSNTNMVIRMPIAVIGGGLTSLDAATESLYYYKKQVEEFAKDYIEKDLTEEDKEIAEEFIAHAKLFKEAKNNEE 615 (1028)
T ss_pred cccccccccCcccCCCCEEEEcCcHHHHHHHHHHHhhccchhhHHHHhhhhhhcccccHHHHHHHHHHHHhhcchhccch
Confidence 1357999999999999999833210
Q ss_pred -----CCCCeEEEEecCcccccccCchhHHHHHHHHHcCCcEEEecceeeecccCC-C---eEEc---------------
Q 017664 162 -----FPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVTLNTISD-G---LIET--------------- 217 (368)
Q Consensus 162 -----~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~-~---~v~~--------------- 217 (368)
.....|++++|+..--.........++. ...+.||+++++..+.++..++ + .+++
T Consensus 616 v~~l~~~~G~VtIvYRr~~~empA~~~~~eEv~-~A~eEGV~f~~~~~P~~i~~d~~g~v~~l~~~~~~~~~~~~~~~~~ 694 (1028)
T PRK06567 616 LRKVFNKLGGATVYYRGRLQDSPAYKLNHEELI-YALALGVDFKENMQPLRINVDKYGHVESVEFENRNRHCEQSKTAWQ 694 (1028)
T ss_pred hhhhhccCCceEEEecCChhhCCCCCCCHHHHH-HHHHcCcEEEecCCcEEEEecCCCeEEEEEEEEEeccccccccccc
Confidence 0011288888875421111111133443 3445699999999998887653 3 1111
Q ss_pred C---------------CCcEEecCEEEEccCCCCCchhhhccccccccCCCCcEEeCCCeeecCCCCeEEecccCCCCcc
Q 017664 218 S---------------SGETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITDIPEI 282 (368)
Q Consensus 218 ~---------------~g~~i~~d~vi~a~G~~p~~~~~~~~~l~~~~~~~g~i~vd~~~~~~~~~~ifa~GD~~~~~~~ 282 (368)
. ...+++||.||+|+|..|++.+... +..+-. +.+++|+.
T Consensus 695 ~~~~~~~~~~~~~~~~~~~~i~~~~vi~A~G~~~~~~~~~~---------------~~s~~~-d~~~~f~G--------- 749 (1028)
T PRK06567 695 SHEFGLTRLPRQCYAFPRNDIKTKTVIMAIGIENNTQFDED---------------KYSYFG-DCNPKYSG--------- 749 (1028)
T ss_pred ccccccCCcCcccCCCccccccCCEEEEecccCCccccccc---------------cccccc-CCCCcccc---------
Confidence 1 1137999999999999998765210 001111 34555544
Q ss_pred chHHHHHHHHHHHHHHHHHHHcCCCC
Q 017664 283 KQGYLAQKHALVTAKNLKKLMMGRNK 308 (368)
Q Consensus 283 ~~~~~a~~~g~~aa~~i~~~l~g~~~ 308 (368)
+...|+.+|+.++.+|.++|...++
T Consensus 750 -tvv~A~as~k~~~~~i~~~l~~~~~ 774 (1028)
T PRK06567 750 -SVVKALASSKEGYDAINKKLINNNP 774 (1028)
T ss_pred -HHHHHHHHHHhHHHHHHHHHhhCCC
Confidence 5788999999999999999876543
No 80
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=99.85 E-value=7.7e-21 Score=182.20 Aligned_cols=273 Identities=23% Similarity=0.317 Sum_probs=135.5
Q ss_pred CCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeecccee-----------eee---------ccccc--cc--ce
Q 017664 16 KKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITWASLR-----------AVV---------EPSFA--VR--SV 70 (368)
Q Consensus 16 ~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~~~~~-----------~~~---------~~~~~--~~--~~ 70 (368)
+++|+|||||++||++|+.|. .|++++++|+++.+|+.|.--. ... -.+++ .. .+
T Consensus 1 ~krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W~~~~~~~~g~~~~y~sl~~n~sk~~~~fsdfp~p~~~p~f 80 (531)
T PF00743_consen 1 AKRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLWRYTENPEDGRSSVYDSLHTNTSKEMMAFSDFPFPEDYPDF 80 (531)
T ss_dssp --EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGGCHSTTCCCSEGGGSTT-B-SS-GGGSCCTTS-HCCCCSSS
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccCeeCCcCCCCccccccceEEeeCchHhcCCCcCCCCCCCCC
Confidence 368999999999999999987 6999999999999998884210 000 00000 00 00
Q ss_pred eecc---ccc----------CceeEEEeEEEEeec---------cEEEecC-C--eEEEecEEEEecCCC--CCCCC---
Q 017664 71 INHG---DYL----------SNVKIVVSTAVSITD---------TEVVTAG-G--QTFVYDYVVVATGHV--ESVPK--- 120 (368)
Q Consensus 71 ~~~~---~~~----------~~~~~~~~~~~~~~~---------~~v~~~~-g--~~~~~d~lvlAtG~~--~~~p~--- 120 (368)
.... +|+ ..++ .+.+|+.+.. ..|.+.+ + ++..||+|++|||.. |.+|.
T Consensus 81 ~~~~~v~~Yl~~Ya~~f~L~~~I~-fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~~~~~fD~VvvatG~~~~P~~P~~~~ 159 (531)
T PF00743_consen 81 PSHSEVLEYLESYAEHFGLRKHIR-FNTEVVSVERDPDFSATGKWEVTTENDGKEETEEFDAVVVATGHFSKPNIPEPSF 159 (531)
T ss_dssp EBHHHHHHHHHHHHHHTTGGGGEE-TSEEEEEEEEETTTT-ETEEEEEETTTTEEEEEEECEEEEEE-SSSCESB-----
T ss_pred CCHHHHHHHHHHHHhhhCCcceEE-EccEEeEeeeccccCCCceEEEEeecCCeEEEEEeCeEEEcCCCcCCCCCChhhh
Confidence 0000 010 1111 1223333321 1455543 3 345799999999987 66553
Q ss_pred --ch---HHHHHHHHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccc-cccc--------------
Q 017664 121 --SR---TERLSQYEKDFEKVKSANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKL-LEFV-------------- 180 (368)
Q Consensus 121 --~~---~~~~~~~~~~~~~~~~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~-l~~~-------------- 180 (368)
++ ++-+++.........++|+|+|||+|.||.|+|.+++. ...+|++..|+... +|..
T Consensus 160 ~G~e~F~G~i~HS~~yr~~~~f~gKrVlVVG~g~Sg~DIa~el~~--~a~~v~~s~R~~~wv~pr~~~~G~P~D~~~~~R 237 (531)
T PF00743_consen 160 PGLEKFKGEIIHSKDYRDPEPFKGKRVLVVGGGNSGADIAVELSR--VAKKVYLSTRRGAWVLPRYWDNGYPFDMVFSTR 237 (531)
T ss_dssp CTGGGHCSEEEEGGG--TGGGGTTSEEEEESSSHHHHHHHHHHTT--TSCCEEEECC-----------------------
T ss_pred hhhhcCCeeEEccccCcChhhcCCCEEEEEeCCHhHHHHHHHHHH--hcCCeEEEEeccccccccccccccccccccccc
Confidence 21 11122222222345679999999999999999999985 46788888776431 1110
Q ss_pred ---------CchhHHH---------------------------------HHHHHHcCCcEEEecceeeecccCCCeEEcC
Q 017664 181 ---------GSRASQI---------------------------------ALDWLTSKKVEVILNQSVTLNTISDGLIETS 218 (368)
Q Consensus 181 ---------~~~~~~~---------------------------------~~~~l~~~gv~i~~~~~v~~i~~~~~~v~~~ 218 (368)
+..+.+. +...+....|+++ ..|.++ .++++.+.
T Consensus 238 ~~~~l~~~lp~~~~~~~~~~~l~~~~~~~~~gl~p~~~~~~~~~~ind~l~~~i~~G~i~vk--~~I~~~--~~~~v~F~ 313 (531)
T PF00743_consen 238 FSSFLQKNLPESLSNWLLEKKLNKRFDHENYGLKPKHRFFSQHPTINDELPNRIRSGRIKVK--PDIKRF--TENSVIFE 313 (531)
T ss_dssp -------------------------------------------------------------E--E-EEEE---SSEEEET
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc--cccccc--cccccccc
Confidence 0001111 1111111222222 112222 22378899
Q ss_pred CCcEE-ecCEEEEccCCCCCchhhhccccccccCCCCcEEeCCCeeec--CCCCeEEecccCCCCccchHHHHHHHHHHH
Q 017664 219 SGETI-DTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVR--GFKNVFAIGDITDIPEIKQGYLAQKHALVT 295 (368)
Q Consensus 219 ~g~~i-~~d~vi~a~G~~p~~~~~~~~~l~~~~~~~g~i~vd~~~~~~--~~~~ifa~GD~~~~~~~~~~~~a~~~g~~a 295 (368)
||+++ ++|.||+|||+..+.+|++++.+. . .++.+..-.++-.+ .+|++..+|=+..... ....+..|++.+
T Consensus 314 DGs~~e~vD~II~~TGY~~~fpFL~~~~~~--~-~~~~~~LYk~vfp~~~~~ptLafIG~~~~~g~--~fp~~ElQArw~ 388 (531)
T PF00743_consen 314 DGSTEEDVDVIIFCTGYKFSFPFLDESLIK--V-DDNRVRLYKHVFPPNLDHPTLAFIGLVQPFGS--IFPIFELQARWA 388 (531)
T ss_dssp TSEEEEE-SEEEE---EE---TTB-TTTT---S--SSSSSEETTTEETETTSTTEEESS-SBSSS---HHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccc--c-cccccccccccccccccccccccccccccccc--cccccccccccc
Confidence 99875 699999999999999999876442 2 22333333443322 3589999998753221 234567777777
Q ss_pred HHHHH
Q 017664 296 AKNLK 300 (368)
Q Consensus 296 a~~i~ 300 (368)
|+-+.
T Consensus 389 a~v~s 393 (531)
T PF00743_consen 389 ARVFS 393 (531)
T ss_dssp HHHHT
T ss_pred ccccc
Confidence 66554
No 81
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=99.85 E-value=9.9e-21 Score=176.88 Aligned_cols=290 Identities=21% Similarity=0.198 Sum_probs=183.3
Q ss_pred eeccCCcC-CCCCCcEEEECCChHHHHHHHHhhc-CCcEEEEcCCCceeeeccceeeeecc-cccccceeecccccC--c
Q 017664 5 LWGSTAAG-LVEKKKVVVIGGGVGGSLLAYHIQS-FADVVLIDEKEYFEITWASLRAVVEP-SFAVRSVINHGDYLS--N 79 (368)
Q Consensus 5 ~~~~~~~~-~~~~~~vvIIGaG~aGl~aA~~L~~-g~~v~lie~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~ 79 (368)
.|....++ .....+|.|||||||||++|..|.+ |++|+++|+.+..|.. +...+.. ....+......+++. +
T Consensus 111 g~i~~~~~~~~tg~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGl---l~yGIP~~kl~k~i~d~~i~~l~~~G 187 (457)
T COG0493 111 GWIPGELPGSRTGKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGL---LLYGIPDFKLPKDILDRRLELLERSG 187 (457)
T ss_pred CCCCCCCCCCCCCCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCcee---EEecCchhhccchHHHHHHHHHHHcC
Confidence 45555433 4456899999999999999999984 9999999999987633 1111111 111122222222222 4
Q ss_pred eeEEEeEEEEeeccEEEecCCeEEEecEEEEecCCC-C---CCCCchHHHHHHHHHHHHHH---------------hcCC
Q 017664 80 VKIVVSTAVSITDTEVVTAGGQTFVYDYVVVATGHV-E---SVPKSRTERLSQYEKDFEKV---------------KSAN 140 (368)
Q Consensus 80 ~~~~~~~~~~~~~~~v~~~~g~~~~~d~lvlAtG~~-~---~~p~~~~~~~~~~~~~~~~~---------------~~~~ 140 (368)
++|.....+..+ ++.. ...-.||++++|+|+. | .+|+.+...++.....+.+. ..++
T Consensus 188 v~~~~~~~vG~~---it~~-~L~~e~Dav~l~~G~~~~~~l~i~g~d~~gv~~A~dfL~~~~~~~~~~~~~~~~~~~~gk 263 (457)
T COG0493 188 VEFKLNVRVGRD---ITLE-ELLKEYDAVFLATGAGKPRPLDIPGEDAKGVAFALDFLTRLNKEVLGDFAEDRTPPAKGK 263 (457)
T ss_pred eEEEEcceECCc---CCHH-HHHHhhCEEEEeccccCCCCCCCCCcCCCcchHHHHHHHHHHHHHhcccccccCCCCCCC
Confidence 455443333222 1111 1123579999999998 4 35554433333332222111 1239
Q ss_pred eEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccc--ccccCchhHHHHHHHHHcCCcEEEecceeeecccCC-CeEE-
Q 017664 141 SVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKL--LEFVGSRASQIALDWLTSKKVEVILNQSVTLNTISD-GLIE- 216 (368)
Q Consensus 141 ~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~--l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~-~~v~- 216 (368)
+++|||+|.+++|++..... ....+|+.+.+...- ...++........+...+.|+.+.......++..++ +.|.
T Consensus 264 ~vvVIGgG~Ta~D~~~t~~r-~Ga~~v~~~~~~~~~~~~~~~~~~~~~~~~~~a~eeg~~~~~~~~~~~~~~~e~GrV~~ 342 (457)
T COG0493 264 RVVVIGGGDTAMDCAGTALR-LGAKSVTCFYREDRDDETNEWPTWAAQLEVRSAGEEGVERLPFVQPKAFIGNEGGRVTG 342 (457)
T ss_pred eEEEECCCCCHHHHHHHHhh-cCCeEEEEeccccccccCCcccccchhhhhhhhhhcCCcccccCCceeEeecCCCcEee
Confidence 99999999999999977653 344478877532221 112222335556677888888888887777776543 3111
Q ss_pred -------cC--------------CC--cEEecCEEEEccCCCCCchhhhccccccccCCCCcEEeCCCe-eecCCCCeEE
Q 017664 217 -------TS--------------SG--ETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENL-RVRGFKNVFA 272 (368)
Q Consensus 217 -------~~--------------~g--~~i~~d~vi~a~G~~p~~~~~~~~~l~~~~~~~g~i~vd~~~-~~~~~~~ifa 272 (368)
.. .| .++++|.++.+.|+.++..........+..+..|.+.+++.+ +| +.|++||
T Consensus 343 ~~~~~~~~~~~~~~~~r~~p~~v~gs~~~~~aD~v~~aig~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~t-s~~~vfa 421 (457)
T COG0493 343 VKFGRVEPGEYVDGWGRRGPVGVIGTEKTDAADTVILAIGFEGDATDGLLLEFGLKLDKRGRIKVDENLQQT-SIPGVFA 421 (457)
T ss_pred eecccccccCcccccccccCccccCceEEehHHHHHHHhccCCCcccccccccccccCCCCceecccccccc-cCCCeee
Confidence 11 12 268899999999998765432222213356788999999998 66 8999999
Q ss_pred ecccCCCCccchHHHHHHHHHHHHHHHH-HHHcC
Q 017664 273 IGDITDIPEIKQGYLAQKHALVTAKNLK-KLMMG 305 (368)
Q Consensus 273 ~GD~~~~~~~~~~~~a~~~g~~aa~~i~-~~l~g 305 (368)
.||+..... +...|+.+|+.+|+.|. ..+.+
T Consensus 422 ~gD~~~g~~--~vv~ai~eGr~aak~i~~~~l~~ 453 (457)
T COG0493 422 GGDAVRGAA--LVVWAIAEGREAAKAIDKELLLG 453 (457)
T ss_pred Cceeccchh--hhhhHHhhchHHHHhhhHHHHhh
Confidence 999997643 78899999999999998 44443
No 82
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.82 E-value=1.5e-18 Score=154.07 Aligned_cols=289 Identities=20% Similarity=0.229 Sum_probs=183.5
Q ss_pred CCCCCcEEEECCChHHHHHHHHhhc--CCcEEEEcCCCceeeeccceee-----------e---eccccc----------
Q 017664 13 LVEKKKVVVIGGGVGGSLLAYHIQS--FADVVLIDEKEYFEITWASLRA-----------V---VEPSFA---------- 66 (368)
Q Consensus 13 ~~~~~~vvIIGaG~aGl~aA~~L~~--g~~v~lie~~~~~~~~~~~~~~-----------~---~~~~~~---------- 66 (368)
|++.+|++.||-||+-|+.|..|.. +.++..+||.+.|.+.++.+.. + ..|.-.
T Consensus 2 ~~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F~WHpGmllegstlQv~FlkDLVTl~~PTs~ySFLNYL~~h 81 (436)
T COG3486 2 MAEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDFSWHPGMLLEGSTLQVPFLKDLVTLVDPTSPYSFLNYLHEH 81 (436)
T ss_pred CCcceeeEEEccCchHHHHHHHhccccCcceEEEecCCCCCcCCCcccCCccccccchhhhccccCCCCchHHHHHHHHc
Confidence 5678999999999999999999984 7899999999987654433211 0 011000
Q ss_pred ---------ccceeeccc----------ccCceeEEEeEEE---Eeecc-----EEEecCCeEEEecEEEEecCCCCCCC
Q 017664 67 ---------VRSVINHGD----------YLSNVKIVVSTAV---SITDT-----EVVTAGGQTFVYDYVVVATGHVESVP 119 (368)
Q Consensus 67 ---------~~~~~~~~~----------~~~~~~~~~~~~~---~~~~~-----~v~~~~g~~~~~d~lvlAtG~~~~~p 119 (368)
+....++.+ .+..+++ ...+. .++.. .+.+.++..+.++.|||++|.+|.+|
T Consensus 82 ~RLy~Fl~~e~f~i~R~Ey~dY~~Waa~~l~~~rf-g~~V~~i~~~~~d~~~~~~~~t~~~~~y~ar~lVlg~G~~P~IP 160 (436)
T COG3486 82 GRLYEFLNYETFHIPRREYNDYCQWAASQLPSLRF-GEEVTDISSLDGDAVVRLFVVTANGTVYRARNLVLGVGTQPYIP 160 (436)
T ss_pred chHhhhhhhhcccccHHHHHHHHHHHHhhCCcccc-CCeeccccccCCcceeEEEEEcCCCcEEEeeeEEEccCCCcCCC
Confidence 000001111 1111111 22333 22211 35667777899999999999999999
Q ss_pred Cc----hHHHH-HHHHHH--HHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCC--eEEEEecCcccccc---------cC
Q 017664 120 KS----RTERL-SQYEKD--FEKVKSANSVLIVGGGPTGVELAGEIAVDFPDK--KVILVHRGPKLLEF---------VG 181 (368)
Q Consensus 120 ~~----~~~~~-~~~~~~--~~~~~~~~~v~VvG~g~~~~e~a~~l~~~~~~~--~v~~i~~~~~~l~~---------~~ 181 (368)
+. ..+.+ ++.+.. .......++|.|||+|.||.|+-..|....+.. ++.|+.|+..++|. +.
T Consensus 161 ~~f~~l~~~~vfHss~~~~~~~~~~~~~~V~ViG~GQSAAEi~~~Ll~~~~~~~~~l~witR~~gf~p~d~Skf~~e~F~ 240 (436)
T COG3486 161 PCFRSLIGERVFHSSEYLERHPELLQKRSVTVIGSGQSAAEIFLDLLNSQPPQDYQLNWITRSSGFLPMDYSKFGLEYFS 240 (436)
T ss_pred hHHhCcCccceeehHHHHHhhHHhhcCceEEEEcCCccHHHHHHHHHhCCCCcCccceeeeccCCCCccccchhhhhhcC
Confidence 72 22222 332222 223344555999999999999999998765554 48999999877653 22
Q ss_pred chhHHHH-----------------------------------HHHH--HcCCcEEEecceeeecccCCC---eEE-----
Q 017664 182 SRASQIA-----------------------------------LDWL--TSKKVEVILNQSVTLNTISDG---LIE----- 216 (368)
Q Consensus 182 ~~~~~~~-----------------------------------~~~l--~~~gv~i~~~~~v~~i~~~~~---~v~----- 216 (368)
|+..+.+ ++.+ ++.++.+..++.+..++..++ .+.
T Consensus 241 P~y~dyfy~l~~~~r~~ll~~~~~~YkgI~~~ti~~Iy~~lY~~~l~~~~~~v~l~~~~ev~~~~~~G~g~~~l~~~~~~ 320 (436)
T COG3486 241 PEYTDYFYGLPPEARDELLRKQRLLYKGISFDTIEEIYDLLYEQSLGGRKPDVRLLSLSEVQSVEPAGDGRYRLTLRHHE 320 (436)
T ss_pred chhHHHHhcCCHHHHHHHHhhcCccccccCHHHHHHHHHHHHHHHhcCCCCCeeeccccceeeeecCCCceEEEEEeecc
Confidence 2222221 1111 245789999999999887764 222
Q ss_pred cCCCcEEecCEEEEccCCCCC-chhhhccccccccCCCCcEEeCCCeeecCC----CCeEEecccCCCC---ccchHHHH
Q 017664 217 TSSGETIDTDCHFMCTGKAMA-SSWLRETILKDSLDGRGRLMVDENLRVRGF----KNVFAIGDITDIP---EIKQGYLA 288 (368)
Q Consensus 217 ~~~g~~i~~d~vi~a~G~~p~-~~~~~~~~l~~~~~~~g~i~vd~~~~~~~~----~~ifa~GD~~~~~---~~~~~~~a 288 (368)
+.+.++++.|.||+|||++.. +.|+....-.+.++.+|...|+++++.... ..||+.|-+.... .|.++..|
T Consensus 321 ~~~~~t~~~D~vIlATGY~~~~P~fL~~l~d~l~~d~~g~l~I~~dY~v~~~~~~~~~ifvqn~e~htHGig~pdLsl~a 400 (436)
T COG3486 321 TGELETVETDAVILATGYRRAVPSFLEGLADRLQWDDDGRLVIGRDYRVLWDGPGKGRIFVQNAELHTHGIGAPDLSLGA 400 (436)
T ss_pred CCCceEEEeeEEEEecccccCCchhhhhHHHhhcccccCCeEecCceeeecCCCCcceEEEecccccccccCCccchHHH
Confidence 233358999999999999854 447766553346788999999998777432 3799998876542 23355556
Q ss_pred HHHHHHHHHHHHHHHcCCC
Q 017664 289 QKHALVTAKNLKKLMMGRN 307 (368)
Q Consensus 289 ~~~g~~aa~~i~~~l~g~~ 307 (368)
.+.+. |++.|.|..
T Consensus 401 ~Raa~-----I~~~L~g~~ 414 (436)
T COG3486 401 WRAAV-----ILNSLLGRE 414 (436)
T ss_pred HHHHH-----HHHHHhCcC
Confidence 65543 444444654
No 83
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=99.82 E-value=2e-20 Score=181.47 Aligned_cols=287 Identities=20% Similarity=0.214 Sum_probs=165.8
Q ss_pred eccCCcC-CCCCCcEEEECCChHHHHHHHHhhc-CCcEEEEcCCCceeeeccceeeeecc-cccccceeeccccc--Cce
Q 017664 6 WGSTAAG-LVEKKKVVVIGGGVGGSLLAYHIQS-FADVVLIDEKEYFEITWASLRAVVEP-SFAVRSVINHGDYL--SNV 80 (368)
Q Consensus 6 ~~~~~~~-~~~~~~vvIIGaG~aGl~aA~~L~~-g~~v~lie~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~ 80 (368)
|+-+.|+ ..+.++|.|||+|||||+||-.|.+ |+-|+|+||.+..|+. +...+.. .+......++.+++ .++
T Consensus 1774 wm~p~pp~~rtg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggl---l~ygipnmkldk~vv~rrv~ll~~egi 1850 (2142)
T KOG0399|consen 1774 WMKPCPPAFRTGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGL---LMYGIPNMKLDKFVVQRRVDLLEQEGI 1850 (2142)
T ss_pred CCccCCcccccCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCce---eeecCCccchhHHHHHHHHHHHHhhCc
Confidence 6666654 4457899999999999999999986 9999999999988733 2222111 11111122222222 245
Q ss_pred eEEEeEEEEeeccEEEecCCeEEEecEEEEecCCC-CC---CCCchHHHHHHHHHHHHH---------------HhcCCe
Q 017664 81 KIVVSTAVSITDTEVVTAGGQTFVYDYVVVATGHV-ES---VPKSRTERLSQYEKDFEK---------------VKSANS 141 (368)
Q Consensus 81 ~~~~~~~~~~~~~~v~~~~g~~~~~d~lvlAtG~~-~~---~p~~~~~~~~~~~~~~~~---------------~~~~~~ 141 (368)
+|+...- +..+ +. .|...-++|.+|+|+|+. |+ +|+-+..+++-...+++. -.++|+
T Consensus 1851 ~f~tn~e--igk~-vs-~d~l~~~~daiv~a~gst~prdlpv~grd~kgv~fame~l~~ntk~lld~~~d~~~~~~~gkk 1926 (2142)
T KOG0399|consen 1851 RFVTNTE--IGKH-VS-LDELKKENDAIVLATGSTTPRDLPVPGRDLKGVHFAMEFLEKNTKSLLDSVLDGNYISAKGKK 1926 (2142)
T ss_pred eEEeecc--cccc-cc-HHHHhhccCeEEEEeCCCCCcCCCCCCccccccHHHHHHHHHhHHhhhccccccceeccCCCe
Confidence 5543321 2111 22 244456799999999998 43 455333333322222111 124799
Q ss_pred EEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccc---------ccccCchh-----HHHHHHHH---------------
Q 017664 142 VLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKL---------LEFVGSRA-----SQIALDWL--------------- 192 (368)
Q Consensus 142 v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~---------l~~~~~~~-----~~~~~~~l--------------- 192 (368)
|+|||||.+|-++...-.+ ...+.|.-++--+.. .|.++.-+ ..+.+++.
T Consensus 1927 vivigggdtg~dcigtsvr-hg~~sv~n~ellp~pp~~ra~~npwpqwprvfrvdygh~e~~~~~g~dpr~y~vltk~f~ 2005 (2142)
T KOG0399|consen 1927 VIVIGGGDTGTDCIGTSVR-HGCKSVGNFELLPQPPPERAPDNPWPQWPRVFRVDYGHAEAKEHYGSDPRTYSVLTKRFI 2005 (2142)
T ss_pred EEEECCCCccccccccchh-hccceecceeecCCCCcccCCCCCCccCceEEEeecchHHHHHHhCCCcceeeeeeeeee
Confidence 9999999999998876543 334455444422211 11111100 01111111
Q ss_pred HcCCcEEEecceeeeccc---CCC--eE-EcC-CCcEEecCEEEEccCCC-CCchhhhccccccccCCCCcEEeC-CCee
Q 017664 193 TSKKVEVILNQSVTLNTI---SDG--LI-ETS-SGETIDTDCHFMCTGKA-MASSWLRETILKDSLDGRGRLMVD-ENLR 263 (368)
Q Consensus 193 ~~~gv~i~~~~~v~~i~~---~~~--~v-~~~-~g~~i~~d~vi~a~G~~-p~~~~~~~~~l~~~~~~~g~i~vd-~~~~ 263 (368)
.+.+-. .++-+..+++. +.+ .+ +.. +.+.++||++|+|.|+. |......+ +++..|+++.|..- +.+.
T Consensus 2006 ~~~~g~-v~gl~~vrvew~k~~~g~w~~~ei~~see~~eadlv~lamgf~gpe~~~~~~--~~~~~d~rsni~t~~~~y~ 2082 (2142)
T KOG0399|consen 2006 GDDNGN-VTGLETVRVEWEKDDKGRWQMKEINNSEEIIEADLVILAMGFVGPEKSVIEQ--LNLKTDPRSNILTPKDSYS 2082 (2142)
T ss_pred ccCCCc-eeeEEEEEEEEEecCCCceEEEEcCCcceeeecceeeeeccccCcchhhhhh--cCcccCccccccCCCcccc
Confidence 010100 11111222221 122 22 222 23589999999999998 43444444 44477888776554 4466
Q ss_pred ecCCCCeEEecccCCCCccchHHHHHHHHHHHHHHHHHHHcCC
Q 017664 264 VRGFKNVFAIGDITDIPEIKQGYLAQKHALVTAKNLKKLMMGR 306 (368)
Q Consensus 264 ~~~~~~ifa~GD~~~~~~~~~~~~a~~~g~~aa~~i~~~l~g~ 306 (368)
+ +.+.+||+|||....+ +..+|+++||.+|+.+-..+.|.
T Consensus 2083 t-~v~~vfaagdcrrgqs--lvvwai~egrq~a~~vd~~~~~~ 2122 (2142)
T KOG0399|consen 2083 T-DVAKVFAAGDCRRGQS--LVVWAIQEGRQAARQVDELMGGT 2122 (2142)
T ss_pred c-cccceeecccccCCce--EEEEEehhhhHHHHHHHHHhCCc
Confidence 6 7999999999998766 67899999999999998755443
No 84
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=99.78 E-value=9.3e-21 Score=161.22 Aligned_cols=170 Identities=26% Similarity=0.391 Sum_probs=106.1
Q ss_pred cEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeeccceeeeecccc-c-cccee-----ecc-cc-cCceeE-EEeE
Q 017664 18 KVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITWASLRAVVEPSF-A-VRSVI-----NHG-DY-LSNVKI-VVST 86 (368)
Q Consensus 18 ~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~~~~~~~~~~~~-~-~~~~~-----~~~-~~-~~~~~~-~~~~ 86 (368)
||+||||||||++||.+|+ .+.+++|+|+.+...+....+........ . ..... ... .+ ..++++ +...
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 80 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPGTPYNSGCIPSPLLVEIAPHRHEFLPARLFKLVDQLKNRGVEIRLNAK 80 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHHGHHHHHHHHHTHEEEHHHT
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEecccccccccccccccccccccccccccccccccccccccccceEEEeeccc
Confidence 7999999999999999998 59999999998864432221111100000 0 00000 111 00 124555 3445
Q ss_pred EEEeecc--E-------E---EecCCeEEEecEEEEecCCCCCCCCchH-------HHHHHHHHHHHHHhcCCeEEEEcC
Q 017664 87 AVSITDT--E-------V---VTAGGQTFVYDYVVVATGHVESVPKSRT-------ERLSQYEKDFEKVKSANSVLIVGG 147 (368)
Q Consensus 87 ~~~~~~~--~-------v---~~~~g~~~~~d~lvlAtG~~~~~p~~~~-------~~~~~~~~~~~~~~~~~~v~VvG~ 147 (368)
+..++.. . + ...++..+.||+||+|||+.|..|+++. ..+.++..........++++|||
T Consensus 81 v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG- 159 (201)
T PF07992_consen 81 VVSIDPESKRVVCPAVTIQVVETGDGREIKYDYLVIATGSRPRTPNIPGEEVAYFLRGVDDAQRFLELLESPKRVAVVG- 159 (201)
T ss_dssp EEEEEESTTEEEETCEEEEEEETTTEEEEEEEEEEEESTEEEEEESSTTTTTECBTTSEEHHHHHHTHSSTTSEEEEES-
T ss_pred cccccccccccccCcccceeeccCCceEecCCeeeecCccccceeecCCCccccccccccccccccccccccccccccc-
Confidence 5555432 2 1 2345678999999999999855444332 23445555555555566899998
Q ss_pred chhHHHHHHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHcCCcEEEecceeeecccCCCeEEcCCCcEEecCE
Q 017664 148 GPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVTLNTISDGLIETSSGETIDTDC 227 (368)
Q Consensus 148 g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~v~~~~g~~i~~d~ 227 (368)
T Consensus 160 -------------------------------------------------------------------------------- 159 (201)
T PF07992_consen 160 -------------------------------------------------------------------------------- 159 (201)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEccCCCCCchhhhccccccccCCCCcEEeCCCeeecCCCCeEEecccCCCC
Q 017664 228 HFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITDIP 280 (368)
Q Consensus 228 vi~a~G~~p~~~~~~~~~l~~~~~~~g~i~vd~~~~~~~~~~ifa~GD~~~~~ 280 (368)
.+++. ...+++++++|++.||+++|+ +.||||++|||++.+
T Consensus 160 ----------~~~l~-~~~~~~~~~~g~i~vd~~~~t-~~~~Iya~GD~a~~~ 200 (201)
T PF07992_consen 160 ----------TEFLA-EKLGVELDENGFIKVDENLQT-SVPGIYAAGDCAGIY 200 (201)
T ss_dssp ----------TTTST-HHTTSTBTTTSSBEEBTTSBB-SSTTEEE-GGGBEES
T ss_pred ----------ccccc-ccccccccccccccccccccc-ccccccccccccccC
Confidence 34442 223336788999999999999 799999999999653
No 85
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=99.78 E-value=1.3e-18 Score=145.01 Aligned_cols=252 Identities=19% Similarity=0.274 Sum_probs=155.6
Q ss_pred cEEEECCChHHHHHHHHhh---cCCcEEEEcCCCceee--eccceeeeecccccccceeecccccCc-eeEEEeEEEEee
Q 017664 18 KVVVIGGGVGGSLLAYHIQ---SFADVVLIDEKEYFEI--TWASLRAVVEPSFAVRSVINHGDYLSN-VKIVVSTAVSIT 91 (368)
Q Consensus 18 ~vvIIGaG~aGl~aA~~L~---~g~~v~lie~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 91 (368)
+.+|||||.||.+||..|+ +..+|+|+...+..-- ++..+..+. ..|..+.. ...++... -+++++ +..++
T Consensus 1 kfivvgggiagvscaeqla~~~psa~illitass~vksvtn~~~i~~yl-ekfdv~eq-~~~elg~~f~~~~~~-v~~~~ 77 (334)
T KOG2755|consen 1 KFIVVGGGIAGVSCAEQLAQLEPSAEILLITASSFVKSVTNYQKIGQYL-EKFDVKEQ-NCHELGPDFRRFLND-VVTWD 77 (334)
T ss_pred CeEEEcCccccccHHHHHHhhCCCCcEEEEeccHHHHHHhhHHHHHHHH-HhcCcccc-chhhhcccHHHHHHh-hhhhc
Confidence 3689999999999999876 5889999988764210 000000000 01110000 00001000 023344 55555
Q ss_pred c--cEEEecCCeEEEecEEEEecCCCCCCCCc--h-----HHHHHHHHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhC
Q 017664 92 D--TEVVTAGGQTFVYDYVVVATGHVESVPKS--R-----TERLSQYEKDFEKVKSANSVLIVGGGPTGVELAGEIAVDF 162 (368)
Q Consensus 92 ~--~~v~~~~g~~~~~d~lvlAtG~~~~~p~~--~-----~~~~~~~~~~~~~~~~~~~v~VvG~g~~~~e~a~~l~~~~ 162 (368)
. +.+++.+|..+.|++|++|+|.+|..--. + .+...+.......+.+.|.|+++|.|-+++|++.++.
T Consensus 78 s~ehci~t~~g~~~ky~kKOG~tg~kPklq~E~~n~~Iv~irDtDsaQllq~kl~kaK~VlilgnGgia~El~yElk--- 154 (334)
T KOG2755|consen 78 SSEHCIHTQNGEKLKYFKLCLCTGYKPKLQVEGINPKIVGIRDTDSAQLLQCKLVKAKIVLILGNGGIAMELTYELK--- 154 (334)
T ss_pred cccceEEecCCceeeEEEEEEecCCCcceeecCCCceEEEEecCcHHHHHHHHHhhcceEEEEecCchhHHHHHHhh---
Confidence 3 47899999999999999999999854321 1 1223334444456778999999999999999999986
Q ss_pred CCCeEEEEecCccccc-ccCchhHHHHHHHHHcC-----------------------------CcEEEecceeeec----
Q 017664 163 PDKKVILVHRGPKLLE-FVGSRASQIALDWLTSK-----------------------------KVEVILNQSVTLN---- 208 (368)
Q Consensus 163 ~~~~v~~i~~~~~~l~-~~~~~~~~~~~~~l~~~-----------------------------gv~i~~~~~v~~i---- 208 (368)
..+|+|....+.+.. +++|.....+...++.. |=+++..-....+
T Consensus 155 -~~nv~w~ikd~~IsaTFfdpGaaef~~i~l~a~~s~~~iaiKh~q~iea~pk~~~n~vg~algpDw~s~~dl~g~~ese 233 (334)
T KOG2755|consen 155 -ILNVTWKIKDEGISATFFDPGAAEFYDINLRADRSTRIIAIKHFQYIEAFPKCEENNVGPALGPDWHSQIDLQGISESE 233 (334)
T ss_pred -cceeEEEecchhhhhcccCccHHHHhHhhhhcccccchhhhhhhhhhhhcCcccccCcccccCcchhhhcccccchhhh
Confidence 678888887766554 45555555443333110 1111110000000
Q ss_pred ---------------ccCCC-eEEcC---CC--cEEecCEEEEccCCCCCchhhhccccccccCCCCcEEeCCCeeecCC
Q 017664 209 ---------------TISDG-LIETS---SG--ETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGF 267 (368)
Q Consensus 209 ---------------~~~~~-~v~~~---~g--~~i~~d~vi~a~G~~p~~~~~~~~~l~~~~~~~g~i~vd~~~~~~~~ 267 (368)
..++. .+.-. ++ ..+.+|.+++++|..||.++.-...+ ...++|.+.||+.|++ +.
T Consensus 234 er~l~~l~~~~~~~~d~~d~~sv~~~~~ek~~~~qlt~d~ivSatgvtpn~e~~~~~~l--q~~edggikvdd~m~t-sl 310 (334)
T KOG2755|consen 234 NRSLTYLRNCVITSTDTSDNLSVHYMDKEKMADNQLTCDFIVSATGVTPNSEWAMNKML--QITEDGGIKVDDAMET-SL 310 (334)
T ss_pred hhhhHHhhhheeeeccchhhcccccccccccccceeeeeEEEeccccCcCceEEecChh--hhccccCeeehhhccc-cc
Confidence 01111 11111 11 25789999999999999987665555 5677899999999999 89
Q ss_pred CCeEEecccCCC
Q 017664 268 KNVFAIGDITDI 279 (368)
Q Consensus 268 ~~ifa~GD~~~~ 279 (368)
|++||+||.+..
T Consensus 311 pdvFa~gDvctt 322 (334)
T KOG2755|consen 311 PDVFAAGDVCTT 322 (334)
T ss_pred cceeeecceecc
Confidence 999999998764
No 86
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=99.76 E-value=2.6e-18 Score=156.46 Aligned_cols=220 Identities=21% Similarity=0.273 Sum_probs=116.4
Q ss_pred CCcEEEECCChHHHHHHHHhhc--CCcEEEEcCCCceeeeccceee-----------ee---ccc--cc-----------
Q 017664 16 KKKVVVIGGGVGGSLLAYHIQS--FADVVLIDEKEYFEITWASLRA-----------VV---EPS--FA----------- 66 (368)
Q Consensus 16 ~~~vvIIGaG~aGl~aA~~L~~--g~~v~lie~~~~~~~~~~~~~~-----------~~---~~~--~~----------- 66 (368)
.+|+|+||.||++|+.|..|.. ..++..+|+.+.+.+..+.+.. .+ .+. +.
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~f~Wh~gmll~~~~~q~~fl~Dlvt~~~P~s~~sflnYL~~~~rl 81 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPSFSWHPGMLLPGARMQVSFLKDLVTLRDPTSPFSFLNYLHEHGRL 81 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS--TTGGG--SS-B-SS-TTSSSSTTT-TTSTTSHHHHHHHTT-H
T ss_pred ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCCCCcCCccCCCCCccccccccccCcCcCCCCcccHHHHHHHcCCh
Confidence 5799999999999999999983 6999999999877544332211 00 000 00
Q ss_pred ----------------ccceeecccccCceeEEEeEEEEeecc--------EEEec----CCeEEEecEEEEecCCCCCC
Q 017664 67 ----------------VRSVINHGDYLSNVKIVVSTAVSITDT--------EVVTA----GGQTFVYDYVVVATGHVESV 118 (368)
Q Consensus 67 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~v~~~----~g~~~~~d~lvlAtG~~~~~ 118 (368)
.++..+..+.+...-.+..+|..+++. .|.+. ++..+.++.||+|+|..|.+
T Consensus 82 ~~f~~~~~~~p~R~ef~dYl~Wva~~~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~~~g~~~~~~ar~vVla~G~~P~i 161 (341)
T PF13434_consen 82 YEFYNRGYFFPSRREFNDYLRWVAEQLDNQVRYGSEVTSIEPDDDGDEDLFRVTTRDSDGDGETYRARNVVLATGGQPRI 161 (341)
T ss_dssp HHHHHH--SS-BHHHHHHHHHHHHCCGTTTEEESEEEEEEEEEEETTEEEEEEEEEETTS-EEEEEESEEEE----EE--
T ss_pred hhhhhcCCCCCCHHHHHHHHHHHHHhCCCceEECCEEEEEEEecCCCccEEEEEEeecCCCeeEEEeCeEEECcCCCCCC
Confidence 000111111222312234455555421 45552 45789999999999999999
Q ss_pred CCchH-----HHH-HHH--HHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccc---------cC
Q 017664 119 PKSRT-----ERL-SQY--EKDFEKVKSANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEF---------VG 181 (368)
Q Consensus 119 p~~~~-----~~~-~~~--~~~~~~~~~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~---------~~ 181 (368)
|..-. ..+ +.. ....+.....++|+|||||.||.|++..|.++.+..+|+++.|++.+.+. +.
T Consensus 162 P~~~~~~~~~~~v~Hss~~~~~~~~~~~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~~~~~d~s~f~ne~f~ 241 (341)
T PF13434_consen 162 PEWFQDLPGSPRVFHSSEYLSRIDQSLAGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPGFFPMDDSPFVNEIFS 241 (341)
T ss_dssp -GGGGGGTT-TTEEEGGGHHHHHT-----EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS-EB----CCHHGGGS
T ss_pred CcchhhcCCCCCEEEehHhhhccccccCCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCccCCCccccchhhhcC
Confidence 87432 111 222 22222255689999999999999999999987666899999999765332 12
Q ss_pred chhH-------------------------------HHHH-----HHH-HcCCcEEEecceeeecccCC-C--eEEcCC--
Q 017664 182 SRAS-------------------------------QIAL-----DWL-TSKKVEVILNQSVTLNTISD-G--LIETSS-- 219 (368)
Q Consensus 182 ~~~~-------------------------------~~~~-----~~l-~~~gv~i~~~~~v~~i~~~~-~--~v~~~~-- 219 (368)
|+.. +.+. +.+ .+..+.++.++.|+.++..+ + .+.+.+
T Consensus 242 P~~v~~f~~l~~~~R~~~l~~~~~~ny~~i~~~~l~~iy~~lY~~~v~g~~~~~l~~~~~v~~~~~~~~~~~~l~~~~~~ 321 (341)
T PF13434_consen 242 PEYVDYFYSLPDEERRELLREQRHTNYGGIDPDLLEAIYDRLYEQRVSGRGRLRLLPNTEVTSAEQDGDGGVRLTLRHRQ 321 (341)
T ss_dssp HHHHHHHHTS-HHHHHHHHHHTGGGTSSEB-HHHHHHHHHHHHHHHHHT---SEEETTEEEEEEEEES-SSEEEEEEETT
T ss_pred chhhhhhhcCCHHHHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHHhcCCCCeEEeCCCEEEEEEECCCCEEEEEEEECC
Confidence 2211 1111 112 34468899999999987765 3 444433
Q ss_pred ---CcEEecCEEEEccCCC
Q 017664 220 ---GETIDTDCHFMCTGKA 235 (368)
Q Consensus 220 ---g~~i~~d~vi~a~G~~ 235 (368)
.+++++|.||+|||++
T Consensus 322 ~~~~~~~~~D~VilATGy~ 340 (341)
T PF13434_consen 322 TGEEETLEVDAVILATGYR 340 (341)
T ss_dssp T--EEEEEESEEEE---EE
T ss_pred CCCeEEEecCEEEEcCCcc
Confidence 2478999999999985
No 87
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=99.71 E-value=7e-16 Score=145.66 Aligned_cols=163 Identities=25% Similarity=0.384 Sum_probs=106.6
Q ss_pred CCCCCCcEEEECCChHHHHHHHHhhc-CCc-EEEEcCCCceeeeccceee-----eec------ccccc---cceeec--
Q 017664 12 GLVEKKKVVVIGGGVGGSLLAYHIQS-FAD-VVLIDEKEYFEITWASLRA-----VVE------PSFAV---RSVINH-- 73 (368)
Q Consensus 12 ~~~~~~~vvIIGaG~aGl~aA~~L~~-g~~-v~lie~~~~~~~~~~~~~~-----~~~------~~~~~---~~~~~~-- 73 (368)
.+++.+||+|||||++||++|++|++ |.+ ++|+||++..|..|...+. ... +.++. ..+...
T Consensus 4 ~~~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~~ry~~l~~~~p~~~~~~~~~p~~~~~~~~~~~~ 83 (443)
T COG2072 4 GVATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYNRYPGLRLDSPKWLLGFPFLPFRWDEAFAPFAE 83 (443)
T ss_pred CcCCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcchhccCCceEECCchheeccCCCccCCcccCCCccc
Confidence 45678999999999999999999984 777 9999999988866533111 000 00000 000000
Q ss_pred -cc-------ccC---ceeEEE-eEEEEeecc----EEEecCCeE--EEecEEEEecCCC--CCCCCch------HHHHH
Q 017664 74 -GD-------YLS---NVKIVV-STAVSITDT----EVVTAGGQT--FVYDYVVVATGHV--ESVPKSR------TERLS 127 (368)
Q Consensus 74 -~~-------~~~---~~~~~~-~~~~~~~~~----~v~~~~g~~--~~~d~lvlAtG~~--~~~p~~~------~~~~~ 127 (368)
.+ .+. .+.+.. .++...+.+ +|.++++.. +.+|.||+|||.. |.+|.+. ...++
T Consensus 84 ~~~y~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~~~~a~~vV~ATG~~~~P~iP~~~G~~~f~g~~~H 163 (443)
T COG2072 84 IKDYIKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGTGELTADFVVVATGHLSEPYIPDFAGLDEFKGRILH 163 (443)
T ss_pred HHHHHHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCCeeeEecCEEEEeecCCCCCCCCCCCCccCCCceEEc
Confidence 01 111 112211 122333322 677777765 4599999999987 6777653 23344
Q ss_pred HHHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccc
Q 017664 128 QYEKDFEKVKSANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKL 176 (368)
Q Consensus 128 ~~~~~~~~~~~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~ 176 (368)
+.+........+|+|+|||+|.||++++.+|.+ .+.+|+++.|++..
T Consensus 164 S~~~~~~~~~~GKrV~VIG~GaSA~di~~~l~~--~ga~vt~~qRs~~~ 210 (443)
T COG2072 164 SADWPNPEDLRGKRVLVIGAGASAVDIAPELAE--VGASVTLSQRSPPH 210 (443)
T ss_pred hhcCCCccccCCCeEEEECCCccHHHHHHHHHh--cCCeeEEEecCCCc
Confidence 444444455679999999999999999999996 35999999998643
No 88
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=99.68 E-value=4.2e-15 Score=134.37 Aligned_cols=195 Identities=18% Similarity=0.162 Sum_probs=123.9
Q ss_pred EEEecEEEEecCCCCCCCCch-------HHHHHHHHHHHHHH----------------hcCCeEEE---EcCch------
Q 017664 102 TFVYDYVVVATGHVESVPKSR-------TERLSQYEKDFEKV----------------KSANSVLI---VGGGP------ 149 (368)
Q Consensus 102 ~~~~d~lvlAtG~~~~~p~~~-------~~~~~~~~~~~~~~----------------~~~~~v~V---vG~g~------ 149 (368)
+++...+|+|||..+.-+.-. .+++.+...+.+.+ ..+|+|+. +|+-.
T Consensus 298 e~~vGaIIvAtGy~~~Da~~k~EyGYG~~~nVIT~lElErml~~~GPT~GkvlrpSdg~~pKrVaFIqCVGSRD~~~~n~ 377 (622)
T COG1148 298 ELEVGAIIVATGYKPFDATRKEEYGYGKYPNVITNLELERMLNPNGPTGGKVLRPSDGKPPKRVAFIQCVGSRDFQVGNP 377 (622)
T ss_pred EEEeceEEEEccccccCcchhhhcCCCCCcchhhHHHHHHHhccCCCCCceEEecCCCCCCceEEEEEEecCcCcccCCh
Confidence 567889999999985433211 12222222221111 23567655 56544
Q ss_pred --------hHHHHHHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHcCCcEEEecceeeecccCCC---eEEcC
Q 017664 150 --------TGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVTLNTISDG---LIETS 218 (368)
Q Consensus 150 --------~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~---~v~~~ 218 (368)
.++.-|..+.+++|..+|++++-.-+.. ....-+.+.+.-++.||+++.+. +.+|...++ .|+.+
T Consensus 378 YCSrvCCm~slKqA~~Ike~~Pd~~v~I~YmDiRaf---G~~yEefY~~~Q~~~gV~fIRGr-vaei~e~p~~~l~V~~E 453 (622)
T COG1148 378 YCSRVCCMVSLKQAQLIKERYPDTDVTIYYMDIRAF---GKDYEEFYVRSQEDYGVRFIRGR-VAEIAEFPKKKLIVRVE 453 (622)
T ss_pred hhHHHHHHHHHhhhhhhhhcCCCcceeEEEEEeecc---CccHHHHHHhhhhhhchhhhcCC-hHHheeCCCCeeEEEEE
Confidence 3456777888888999999987655532 22333344444458899998764 444544333 33333
Q ss_pred C---C--cEEecCEEEEccCCCCCc---hhhhccccccccCCCCcEEeC-CCeee--cCCCCeEEecccCCCCccchHHH
Q 017664 219 S---G--ETIDTDCHFMCTGKAMAS---SWLRETILKDSLDGRGRLMVD-ENLRV--RGFKNVFAIGDITDIPEIKQGYL 287 (368)
Q Consensus 219 ~---g--~~i~~d~vi~a~G~~p~~---~~~~~~~l~~~~~~~g~i~vd-~~~~~--~~~~~ifa~GD~~~~~~~~~~~~ 287 (368)
| | .++++|+|++++|+.|.. .... .|++..+++||+... +.++. ++.++||.+|-|.+ |+....
T Consensus 454 dTl~g~~~e~~~DLVVLa~Gmep~~g~~kia~--iLgL~~~~~gF~k~~hPkl~pv~s~~~GIflAG~aqg---PkdI~~ 528 (622)
T COG1148 454 DTLTGEVKEIEADLVVLATGMEPSEGAKKIAK--ILGLSQDEDGFLKEAHPKLRPVDSNRDGIFLAGAAQG---PKDIAD 528 (622)
T ss_pred eccCccceecccceEEEeeccccCcchHHHHH--hcCcccCCCCccccCCCCcccccccCCcEEEeecccC---CccHHH
Confidence 2 3 479999999999998743 2222 244578889998765 44443 15789999998875 457888
Q ss_pred HHHHHHHHHHHHHHHHcC
Q 017664 288 AQKHALVTAKNLKKLMMG 305 (368)
Q Consensus 288 a~~~g~~aa~~i~~~l~g 305 (368)
++.||..||......+..
T Consensus 529 siaqa~aAA~kA~~~l~~ 546 (622)
T COG1148 529 SIAQAKAAAAKAAQLLGR 546 (622)
T ss_pred HHHHhHHHHHHHHHHhhc
Confidence 999999888888776643
No 89
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=99.68 E-value=3.5e-17 Score=139.42 Aligned_cols=154 Identities=29% Similarity=0.413 Sum_probs=85.2
Q ss_pred EEECCChHHHHHHHHhh-cCCc-EEEEcCCCceeeeccceee---eeccc-----c--c------cc---------ceee
Q 017664 20 VVIGGGVGGSLLAYHIQ-SFAD-VVLIDEKEYFEITWASLRA---VVEPS-----F--A------VR---------SVIN 72 (368)
Q Consensus 20 vIIGaG~aGl~aA~~L~-~g~~-v~lie~~~~~~~~~~~~~~---~~~~~-----~--~------~~---------~~~~ 72 (368)
+||||||+||++|.+|. +|.+ ++|+|+++..|..|..... ...+. + . .. ....
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGGVWRRYYSYTRLHSPSFFSSDFGLPDFESFSFDDSPEWRWPHDFPS 80 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTTHHHCH-TTTT-BSSSCCTGGSS--CCCHSCHHHHHHHHHSBSSEB
T ss_pred CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCeeEEeCCCCccccCccccccccCCcccccccccCCCCCCCcccCC
Confidence 79999999999999997 5888 9999999888766643110 00000 0 0 00 0000
Q ss_pred cc---cccC------ceeEE-EeEEEEeecc----EEEecCCeEEEecEEEEecCC--CCCCCCchH----HHHHHHHHH
Q 017664 73 HG---DYLS------NVKIV-VSTAVSITDT----EVVTAGGQTFVYDYVVVATGH--VESVPKSRT----ERLSQYEKD 132 (368)
Q Consensus 73 ~~---~~~~------~~~~~-~~~~~~~~~~----~v~~~~g~~~~~d~lvlAtG~--~~~~p~~~~----~~~~~~~~~ 132 (368)
.. +|+. +.++. +.++..+... .+.+.+++.+.+|+||+|||. .|..|.++. ..++.....
T Consensus 81 ~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~w~v~~~~~~~~~a~~VVlAtG~~~~p~~p~~~g~~~~~~~h~~~~~ 160 (203)
T PF13738_consen 81 GEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDGWTVTTRDGRTIRADRVVLATGHYSHPRIPDIPGSAFRPIIHSADWR 160 (203)
T ss_dssp HHHHHHHHHHHHHHTTGGEETS--EEEEEEETTTEEEEETTS-EEEEEEEEE---SSCSB---S-TTGGCSEEEEGGG-S
T ss_pred HHHHHHHHHHHHhhcCcccccCCEEEEEEEeccEEEEEEEecceeeeeeEEEeeeccCCCCccccccccccceEehhhcC
Confidence 00 0110 23332 2345555422 788888888999999999997 476666544 112221111
Q ss_pred HHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcc
Q 017664 133 FEKVKSANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPK 175 (368)
Q Consensus 133 ~~~~~~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~ 175 (368)
......+++|+|||+|.||+|++..|.+ .+.+|+++.|++.
T Consensus 161 ~~~~~~~k~V~VVG~G~SA~d~a~~l~~--~g~~V~~~~R~~~ 201 (203)
T PF13738_consen 161 DPEDFKGKRVVVVGGGNSAVDIAYALAK--AGKSVTLVTRSPI 201 (203)
T ss_dssp TTGGCTTSEEEEE--SHHHHHHHHHHTT--TCSEEEEEESS--
T ss_pred ChhhcCCCcEEEEcChHHHHHHHHHHHh--hCCEEEEEecCCC
Confidence 1223457999999999999999999996 4699999999864
No 90
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.68 E-value=2.2e-16 Score=147.05 Aligned_cols=219 Identities=22% Similarity=0.298 Sum_probs=130.8
Q ss_pred CCCCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeeccce----------eee------------eccccccc-
Q 017664 13 LVEKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITWASL----------RAV------------VEPSFAVR- 68 (368)
Q Consensus 13 ~~~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~~~~----------~~~------------~~~~~~~~- 68 (368)
++..++++|||||||||++|+.|. .|++++++||.+.+|+.|.-. ... .+-.+..+
T Consensus 3 ~~~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~y~~~~~~~~ss~Y~~l~tn~pKe~~~~~dfpf~~~~ 82 (448)
T KOG1399|consen 3 MMMSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWKYTENVEVVHSSVYKSLRTNLPKEMMGYSDFPFPERD 82 (448)
T ss_pred cCCCCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceEeecCcccccccchhhhhhccCChhhhcCCCCCCcccC
Confidence 455789999999999999999997 599999999999999877433 110 01011111
Q ss_pred -ceeecc----c----ccCc------eeEE--EeEEEEee--ccEEEecCC----eEEEecEEEEecCCC--CCCCCchH
Q 017664 69 -SVINHG----D----YLSN------VKIV--VSTAVSIT--DTEVVTAGG----QTFVYDYVVVATGHV--ESVPKSRT 123 (368)
Q Consensus 69 -~~~~~~----~----~~~~------~~~~--~~~~~~~~--~~~v~~~~g----~~~~~d~lvlAtG~~--~~~p~~~~ 123 (368)
.+.+.. + |.+. +++. ..++...+ ...|...+. +..-||.|++|||.. |.+|.++.
T Consensus 83 ~~~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gkW~V~~~~~~~~~~~~ifd~VvVctGh~~~P~~P~~~g 162 (448)
T KOG1399|consen 83 PRYFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGKWRVTTKDNGTQIEEEIFDAVVVCTGHYVEPRIPQIPG 162 (448)
T ss_pred cccCCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccCCceeEEEecCCcceeEEEeeEEEEcccCcCCCCCCcCCC
Confidence 000000 0 1111 1221 11233333 225554433 467899999999998 77776543
Q ss_pred --------HHHHHHHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHcC
Q 017664 124 --------ERLSQYEKDFEKVKSANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSK 195 (368)
Q Consensus 124 --------~~~~~~~~~~~~~~~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~ 195 (368)
..+++..........+|+|+|||.|+||+|++.+++. ...+|++..+.... ... ....+ ..
T Consensus 163 ~~~~~f~G~~iHS~~Yk~~e~f~~k~VlVIG~g~SG~DIs~d~~~--~ak~v~~~~~~~~~-~~~-------~~~~~-~~ 231 (448)
T KOG1399|consen 163 PGIESFKGKIIHSHDYKSPEKFRDKVVLVVGCGNSGMDISLDLLR--VAKEVHLSVVSPKV-HVE-------PPEIL-GE 231 (448)
T ss_pred CchhhcCCcceehhhccCcccccCceEEEECCCccHHHHHHHHHH--hccCcceeeecccc-ccc-------cccee-ec
Confidence 2344444444455678999999999999999999885 35566665431000 000 00000 11
Q ss_pred CcEEEecceeeecccCCCeEEcCCCcEEecCEEEEccCCCCCchhhhccc
Q 017664 196 KVEVILNQSVTLNTISDGLIETSSGETIDTDCHFMCTGKAMASSWLRETI 245 (368)
Q Consensus 196 gv~i~~~~~v~~i~~~~~~v~~~~g~~i~~d~vi~a~G~~p~~~~~~~~~ 245 (368)
++..+.. +.... +++.+.+.++....+|.+|+|||+.-..+++....
T Consensus 232 ~~~~~~~--i~~~~-e~~~~~~~~~~~~~~D~ii~ctgy~y~fPfl~~~~ 278 (448)
T KOG1399|consen 232 NLWQVPS--IKSFT-EDGSVFEKGGPVERVDRIIFCTGYKYKFPFLETLG 278 (448)
T ss_pred ceEEccc--ccccc-CcceEEEcCceeEEeeeEEEeeeeEeecceeccCC
Confidence 2222222 33222 22246667777889999999999997777766544
No 91
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=99.58 E-value=4.1e-14 Score=124.44 Aligned_cols=279 Identities=19% Similarity=0.152 Sum_probs=154.5
Q ss_pred CCCCcEEEECCChHHHHHHHHhhc---CCcEEEEcCCCceeeeccceeeeecccccccce--eecccccCceeEEEeEEE
Q 017664 14 VEKKKVVVIGGGVGGSLLAYHIQS---FADVVLIDEKEYFEITWASLRAVVEPSFAVRSV--INHGDYLSNVKIVVSTAV 88 (368)
Q Consensus 14 ~~~~~vvIIGaG~aGl~aA~~L~~---g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 88 (368)
...++|+|||+||||+.+|..|-+ +.+|+|+|+.+... +..+..+.|+.++-.. ..+.+....-++- ..-
T Consensus 18 s~~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPF---GLvRyGVAPDHpEvKnvintFt~~aE~~rfs--f~g 92 (468)
T KOG1800|consen 18 SSTPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPF---GLVRYGVAPDHPEVKNVINTFTKTAEHERFS--FFG 92 (468)
T ss_pred cCCceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCccc---ceeeeccCCCCcchhhHHHHHHHHhhccceE--EEe
Confidence 345699999999999999987742 78999999988532 4455555665543220 0111111111111 111
Q ss_pred Eeecc-EEEecCCeEEEecEEEEecCCC----CCCCCchHHHHHHHHHHHHHH------------hcCCeEEEEcCchhH
Q 017664 89 SITDT-EVVTAGGQTFVYDYVVVATGHV----ESVPKSRTERLSQYEKDFEKV------------KSANSVLIVGGGPTG 151 (368)
Q Consensus 89 ~~~~~-~v~~~~g~~~~~d~lvlAtG~~----~~~p~~~~~~~~~~~~~~~~~------------~~~~~v~VvG~g~~~ 151 (368)
++.-. .+.+ ...+-.||.+|||.|+. ..+|+.+...+.+...+.... ....+++|||.|+.+
T Consensus 93 Nv~vG~dvsl-~eL~~~ydavvLaYGa~~dR~L~IPGe~l~~V~Sarefv~Wyng~P~~~~le~dls~~~vvIvG~GNVA 171 (468)
T KOG1800|consen 93 NVKVGRDVSL-KELTDNYDAVVLAYGADGDRRLDIPGEELSGVISAREFVGWYNGLPENQNLEPDLSGRKVVIVGNGNVA 171 (468)
T ss_pred cceecccccH-HHHhhcccEEEEEecCCCCcccCCCCcccccceehhhhhhhccCCCcccccCcccccceEEEEccCchh
Confidence 11111 1122 12245699999999998 467776544444444332211 126899999999999
Q ss_pred HHHHHHHhhh--------------------CCCCeEEEEecCccc--------------cc-------------------
Q 017664 152 VELAGEIAVD--------------------FPDKKVILVHRGPKL--------------LE------------------- 178 (368)
Q Consensus 152 ~e~a~~l~~~--------------------~~~~~v~~i~~~~~~--------------l~------------------- 178 (368)
+++|..|... ..-++|+++-|+..+ ++
T Consensus 172 lDvARiLls~~~~l~~~TDi~~~aL~~L~~s~VkdV~lvgRRgp~~~aFTiKELRE~~~l~~~~~r~~~~~~~~~~~~~~ 251 (468)
T KOG1800|consen 172 LDVARILLSPQGPLFRRTDIPKLALNLLKRSNVKDVKLVGRRGPLQVAFTIKELREVLELPGARPRLDPVDFSGKWMDES 251 (468)
T ss_pred hhhhhhhhCCccccccccCCcHHHHhhhhcCCcceEEEEeccCccceeeeHHHHHHHhCCCCcccccCchhccceeCCcc
Confidence 9999887631 112568888776421 00
Q ss_pred -----ccCchhHHHHHHHHHcCC---------cE---EEecceeeecccC-CC---------------eEEcCCCcEEec
Q 017664 179 -----FVGSRASQIALDWLTSKK---------VE---VILNQSVTLNTIS-DG---------------LIETSSGETIDT 225 (368)
Q Consensus 179 -----~~~~~~~~~~~~~l~~~g---------v~---i~~~~~v~~i~~~-~~---------------~v~~~~g~~i~~ 225 (368)
.--+++.+.+.+.++++- .+ +.....+..|..+ ++ .+.+.+-++++|
T Consensus 252 ~~~~~RpRkrl~ell~k~~~e~~~~~~~~~~~~k~w~~~f~r~P~~i~~~~~~v~~~~~~~t~l~~~~~~~tg~~e~~p~ 331 (468)
T KOG1800|consen 252 ETPQHRPRKRLTELLLKWAREHRAKASEEAGGSKQWHLRFFRTPGAILPGADGVSGVRFQVTILEGTQAVPTGAFETLPC 331 (468)
T ss_pred cccccCchhHHHHHHHHHHHhhhhccccccCccchhHHHHhcCHHHhccCcccccceEEEeeeehhhcccccCceEeecc
Confidence 001223333444444311 10 0111111222222 11 011222358999
Q ss_pred CEEEEccCCCCCchhhhccccccccCCCCcEEeCCCeeec---CCCCeEEecccCCCCccchHHHHHHHHHHHHHHHHHH
Q 017664 226 DCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVR---GFKNVFAIGDITDIPEIKQGYLAQKHALVTAKNLKKL 302 (368)
Q Consensus 226 d~vi~a~G~~p~~~~~~~~~l~~~~~~~g~i~vd~~~~~~---~~~~ifa~GD~~~~~~~~~~~~a~~~g~~aa~~i~~~ 302 (368)
++++.+.|++.. ++.. ++ ..|.+..+.-+...+.. -.|++|+.|-|...|.- .+..+++++..+|+.|.+.
T Consensus 332 ~l~i~sIGYks~-pv~~--gi--pFd~~kgvv~n~~GrV~~s~~~pglY~sGW~k~GP~G-vIattm~dAf~v~d~I~qD 405 (468)
T KOG1800|consen 332 GLLIRSIGYKSV-PVDS--GI--PFDDKKGVVPNVNGRVLVSGCSPGLYASGWVKHGPTG-VIATTMQDAFEVADTIVQD 405 (468)
T ss_pred ceeEeeeeeccc-ccCC--CC--CcccccCcccCCCceEEeeccCCceEEEeeeccCCcc-eeeehhhhHHHHHHHHHHH
Confidence 999999999832 1211 22 23333222222222221 26999999999987542 4567889999999999987
Q ss_pred Hc
Q 017664 303 MM 304 (368)
Q Consensus 303 l~ 304 (368)
+.
T Consensus 406 ~~ 407 (468)
T KOG1800|consen 406 LK 407 (468)
T ss_pred HH
Confidence 75
No 92
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=99.57 E-value=3e-13 Score=126.16 Aligned_cols=159 Identities=14% Similarity=0.091 Sum_probs=111.3
Q ss_pred EEEEcCchhHHHHH-HHHhh--hCCCCeEEEEecCcccccccCchhHHHHHHHHHcCCcEEEecceeeecccCCC---eE
Q 017664 142 VLIVGGGPTGVELA-GEIAV--DFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVTLNTISDG---LI 215 (368)
Q Consensus 142 v~VvG~g~~~~e~a-~~l~~--~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~---~v 215 (368)
=.|++.+.+|+|.+ ..+.+ ...+.+|+++...+..++.. ++.+.+.+.+++.|++++++++|.+++.+++ .+
T Consensus 218 ~~V~~PavIGle~a~~v~~~L~~~LG~~V~~vp~~ppslpG~--rL~~aL~~~l~~~Gv~I~~g~~V~~v~~~~~~V~~v 295 (422)
T PRK05329 218 EAVLLPAVLGLDDDAAVLAELEEALGCPVFELPTLPPSVPGL--RLQNALRRAFERLGGRIMPGDEVLGAEFEGGRVTAV 295 (422)
T ss_pred CEEEECceecCCChHHHHHHHHHHHCCCEEEeCCCCCCCchH--HHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCEEEEE
Confidence 36788899999998 44431 23689999998888877664 6888899999999999999999999876655 23
Q ss_pred EcCCC--cEEecCEEEEccCCCCCchhh------hcccccccc--C-----------------CCCcEEeCCCeee----
Q 017664 216 ETSSG--ETIDTDCHFMCTGKAMASSWL------RETILKDSL--D-----------------GRGRLMVDENLRV---- 264 (368)
Q Consensus 216 ~~~~g--~~i~~d~vi~a~G~~p~~~~~------~~~~l~~~~--~-----------------~~g~i~vd~~~~~---- 264 (368)
...+| ..+++|.+|+|+|..+...+. .+.-+++.+ . ..=.+.+|+.|+.
T Consensus 296 ~~~~g~~~~i~AD~VVLAtGrf~s~GL~a~~~~i~Epif~l~v~~~~~r~~w~~~~~~~~~p~~~~GV~~d~~~~p~~~~ 375 (422)
T PRK05329 296 WTRNHGDIPLRARHFVLATGSFFSGGLVAERDGIREPIFGLDVLQPADRADWYQRDFFAPHPFLQFGVATDATLRPLDSQ 375 (422)
T ss_pred EeeCCceEEEECCEEEEeCCCcccCceeccCCccccccCCCCCCCCCchhhhhhhhhccCCchhhcCceECCCcCcccCC
Confidence 34444 368999999999987554331 111111111 0 0112667776665
Q ss_pred --cCCCCeEEecccCCCCccc---h-HHHHHHHHHHHHHHHHHH
Q 017664 265 --RGFKNVFAIGDITDIPEIK---Q-GYLAQKHALVTAKNLKKL 302 (368)
Q Consensus 265 --~~~~~ifa~GD~~~~~~~~---~-~~~a~~~g~~aa~~i~~~ 302 (368)
+..+|+||+|++.+.+.+. . .-.|...|..||++|.+.
T Consensus 376 g~~~~~nl~a~G~vl~g~d~~~~~~g~Gva~~ta~~a~~~~~~~ 419 (422)
T PRK05329 376 GGPVIENLYAAGAVLGGYDPIREGCGSGVALATALHAAEQIAEE 419 (422)
T ss_pred CCeeccceEEeeehhcCCchHHhCCCchhHHHHHHHHHHHHHHh
Confidence 2479999999999887641 1 136888899999998754
No 93
>PTZ00188 adrenodoxin reductase; Provisional
Probab=99.57 E-value=8.9e-14 Score=129.70 Aligned_cols=273 Identities=15% Similarity=0.137 Sum_probs=147.4
Q ss_pred CCCcEEEECCChHHHHHHHHhh--cCCcEEEEcCCCceeeeccceeeeeccccccc-ce-eeccccc--CceeEEEeEEE
Q 017664 15 EKKKVVVIGGGVGGSLLAYHIQ--SFADVVLIDEKEYFEITWASLRAVVEPSFAVR-SV-INHGDYL--SNVKIVVSTAV 88 (368)
Q Consensus 15 ~~~~vvIIGaG~aGl~aA~~L~--~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~--~~~~~~~~~~~ 88 (368)
..++|+|||||||||+||.+|. .|++|+|+|+.+..+ +.++..+.++.... .. ..+...+ .++++.- .+
T Consensus 38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pg---GLvR~GVaPdh~~~k~v~~~f~~~~~~~~v~f~g--nv 112 (506)
T PTZ00188 38 KPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPY---GLIRYGVAPDHIHVKNTYKTFDPVFLSPNYRFFG--NV 112 (506)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCc---cEEEEeCCCCCccHHHHHHHHHHHHhhCCeEEEe--ee
Confidence 4678999999999999999764 499999999999876 33444444432211 11 1111111 2344442 11
Q ss_pred EeeccEEEecCCeEEEecEEEEecCCCC-CCC------------Cch----HHHHHHHHH----------------H---
Q 017664 89 SITDTEVVTAGGQTFVYDYVVVATGHVE-SVP------------KSR----TERLSQYEK----------------D--- 132 (368)
Q Consensus 89 ~~~~~~v~~~~g~~~~~d~lvlAtG~~~-~~p------------~~~----~~~~~~~~~----------------~--- 132 (368)
.+.. .+..++- ...||.||+|+|+.+ .+| +.+ ..+..+... .
T Consensus 113 ~VG~-Dvt~eeL-~~~YDAVIlAtGA~~l~ipi~~~~~~~~~~GGe~~~~~l~Gvf~A~dfV~WYNg~p~~~~~~~~~ay 190 (506)
T PTZ00188 113 HVGV-DLKMEEL-RNHYNCVIFCCGASEVSIPIGQQDEDKAVSGGETNPRKQNGIFHARDLIYFYNNMYNDVRCKAVDNY 190 (506)
T ss_pred EecC-ccCHHHH-HhcCCEEEEEcCCCCCCCCcccccceeeeccccccccccCcEEehheEEEeecCCCCcccccccccc
Confidence 1211 1222122 237999999999984 344 221 011111100 0
Q ss_pred HHHHhcCCeEEEEcCchhHHHHHHHHhh-------------------hCCCCeEEEEecCccc--------------ccc
Q 017664 133 FEKVKSANSVLIVGGGPTGVELAGEIAV-------------------DFPDKKVILVHRGPKL--------------LEF 179 (368)
Q Consensus 133 ~~~~~~~~~v~VvG~g~~~~e~a~~l~~-------------------~~~~~~v~~i~~~~~~--------------l~~ 179 (368)
+..+...++++|||+|+.++++|..|.. +..-.+|+++-|+... ++.
T Consensus 191 L~p~~~~~~vvVIG~GNVAlDvARiL~~~~d~L~~TDI~~~aL~~L~~s~v~~V~ivgRRGp~qaaFT~kElrEL~~l~~ 270 (506)
T PTZ00188 191 LNSFENFTTSIIIGNGNVSLDIARILIKSPDDLSKTDISSDYLKVIKRHNIKHIYIVGRRGFWQSSFTNAELRELISLEN 270 (506)
T ss_pred ccccCCCCcEEEECCCchHHHHHHHHccCHHHhhcCCCcHHHHHHHHhCCCcEEEEEEecCHHHhCCCHHHHHHHhcCCC
Confidence 0001145789999999999999997542 1223468888776311 010
Q ss_pred ---------c------Cc--h-----------hHHHHHHHHH----------cCCcEEEecceeeecccCCC---eEEcC
Q 017664 180 ---------V------GS--R-----------ASQIALDWLT----------SKKVEVILNQSVTLNTISDG---LIETS 218 (368)
Q Consensus 180 ---------~------~~--~-----------~~~~~~~~l~----------~~gv~i~~~~~v~~i~~~~~---~v~~~ 218 (368)
+ +. . ..+.+.+..+ .+.+.+++...+.+|...++ .+++.
T Consensus 271 ~~v~v~~~d~~~~~~~~~~~~~~r~~~r~~~~~~~~l~~~~~~~~~~~~~~~~r~i~l~F~~sP~ei~~~~~~v~~v~~~ 350 (506)
T PTZ00188 271 TKVILSKKNYDLCCHLKSDEENTNMKKRQHEIFQKMVKNYEEVEKNKEFYKTYKIIEFIFYFEIRQIRPIDGAMKNVELE 350 (506)
T ss_pred CeEEEChhhhcccccccchhhhhhhhhhhhhHHHHHHHHHHhhccCccCCCCceEEEEEccCCceEEECCCCcEeEEEEE
Confidence 0 00 0 1112222221 13456677777777764222 22222
Q ss_pred -----------CC--cEEecCEEEEccCCCCCchhhhccccccccCCCCcEEeCCCeee-cCCCCeEEecccCCCCccch
Q 017664 219 -----------SG--ETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRV-RGFKNVFAIGDITDIPEIKQ 284 (368)
Q Consensus 219 -----------~g--~~i~~d~vi~a~G~~p~~~~~~~~~l~~~~~~~g~i~vd~~~~~-~~~~~ifa~GD~~~~~~~~~ 284 (368)
.| +++++|+|+-++|++..+ + . ++ +.|.+ +.... .++ ...|++|++|-+...|.- .
T Consensus 351 ~n~l~~~~~~~tg~~~~~~~~lV~rsiGY~g~p-~-~--g~--pFd~~--~~n~~-grv~~~~~g~Y~~GWiKrGP~G-v 420 (506)
T PTZ00188 351 LNKNVPMSFSSFKENKVLVTPLVIFATGFKKSN-F-A--EN--LYNQS--VQMFK-EDIGQHKFAIFKAGWFDKGPKG-N 420 (506)
T ss_pred EeecccCccCCCCeeEEEEcCEEEEcccccCCC-C-C--CC--Ccccc--CCCCC-CcccCCCCCcEEeeecCcCCCc-e
Confidence 23 379999999999998532 1 1 22 33422 22111 111 026999999999987642 2
Q ss_pred HHHHHHHHHHHHHHHHHHHc
Q 017664 285 GYLAQKHALVTAKNLKKLMM 304 (368)
Q Consensus 285 ~~~a~~~g~~aa~~i~~~l~ 304 (368)
+.+-+..+..++..|.+.+.
T Consensus 421 Igtn~~da~~t~~~v~~d~~ 440 (506)
T PTZ00188 421 IASQILNSKNSTHLVLNFLQ 440 (506)
T ss_pred eccCcccHHHHHHHHHHHHh
Confidence 22334556667777776654
No 94
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.37 E-value=6.5e-12 Score=112.48 Aligned_cols=68 Identities=24% Similarity=0.166 Sum_probs=55.7
Q ss_pred CchhHHHHHHHHHcCCcEEEecceeeecccCCC--eEEcCCCcEEecCEEEEccC--CCCC-------chhhhcccccc
Q 017664 181 GSRASQIALDWLTSKKVEVILNQSVTLNTISDG--LIETSSGETIDTDCHFMCTG--KAMA-------SSWLRETILKD 248 (368)
Q Consensus 181 ~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~--~v~~~~g~~i~~d~vi~a~G--~~p~-------~~~~~~~~l~~ 248 (368)
...+.+.+.+.+++.||++++++.|.+++.++. .+.+.+|+++.||.+|+|+| .-|. .+++++.++.+
T Consensus 110 A~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~f~l~t~~g~~i~~d~lilAtGG~S~P~lGstg~gy~iA~~~G~~I 188 (408)
T COG2081 110 ASPIVDALLKELEALGVTIRTRSRVSSVEKDDSGFRLDTSSGETVKCDSLILATGGKSWPKLGSTGFGYPIARQFGHTI 188 (408)
T ss_pred hHHHHHHHHHHHHHcCcEEEecceEEeEEecCceEEEEcCCCCEEEccEEEEecCCcCCCCCCCCchhhHHHHHcCCcc
Confidence 346788899999999999999999999998875 88999998999999999999 4442 24666655543
No 95
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=99.36 E-value=3.9e-12 Score=90.84 Aligned_cols=78 Identities=31% Similarity=0.436 Sum_probs=70.9
Q ss_pred eEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHcCCcEEEecceeeecccCCC--eEEcC
Q 017664 141 SVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVTLNTISDG--LIETS 218 (368)
Q Consensus 141 ~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~--~v~~~ 218 (368)
+++|||+|++|+|+|..|.+ .+.+|+++++++.+++.+++.+...+.++++++||++++++.+.+++.+++ .|+++
T Consensus 1 ~vvViGgG~ig~E~A~~l~~--~g~~vtli~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~~~V~~~ 78 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAE--LGKEVTLIERSDRLLPGFDPDAAKILEEYLRKRGVEVHTNTKVKEIEKDGDGVEVTLE 78 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHH--TTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEEESEEEEEEEEETTSEEEEEE
T ss_pred CEEEECcCHHHHHHHHHHHH--hCcEEEEEeccchhhhhcCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCEEEEEEe
Confidence 68999999999999999985 589999999999999999999999999999999999999999999987765 36666
Q ss_pred CC
Q 017664 219 SG 220 (368)
Q Consensus 219 ~g 220 (368)
||
T Consensus 79 ~g 80 (80)
T PF00070_consen 79 DG 80 (80)
T ss_dssp TS
T ss_pred cC
Confidence 65
No 96
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.26 E-value=4.8e-10 Score=103.11 Aligned_cols=159 Identities=23% Similarity=0.342 Sum_probs=97.6
Q ss_pred CCcEEEECCChHHHHHHHHhhc----CCcEEEEcCCCceeee--cc--c------eee---eec-cccc-----------
Q 017664 16 KKKVVVIGGGVGGSLLAYHIQS----FADVVLIDEKEYFEIT--WA--S------LRA---VVE-PSFA----------- 66 (368)
Q Consensus 16 ~~~vvIIGaG~aGl~aA~~L~~----g~~v~lie~~~~~~~~--~~--~------~~~---~~~-~~~~----------- 66 (368)
+++|+|||+|++|+++|.+|.+ ...|.|+|+.+.+|.. +. . ++. ... ++.+
T Consensus 1 ~~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~GiaYs~~~p~~~lNv~a~~mS~~~pD~p~~F~~WL~~~~ 80 (474)
T COG4529 1 MFKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGIAYSTEEPEHLLNVPAARMSAFAPDIPQDFVRWLQKQL 80 (474)
T ss_pred CceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCCccCCCCCchhhhccccccccccCCCCchHHHHHHHhcc
Confidence 4789999999999999998852 3349999999987521 10 0 000 000 1100
Q ss_pred ------------ccceeecc---ccc-----------C--ceeEEEeEEEEeecc------EEEecCCeEEEecEEEEec
Q 017664 67 ------------VRSVINHG---DYL-----------S--NVKIVVSTAVSITDT------EVVTAGGQTFVYDYVVVAT 112 (368)
Q Consensus 67 ------------~~~~~~~~---~~~-----------~--~~~~~~~~~~~~~~~------~v~~~~g~~~~~d~lvlAt 112 (368)
...+.++. +|+ . .+.+++..++.+.+. .+...+|....+|-+|+||
T Consensus 81 ~~~~d~~~~~~d~~~y~pR~lfG~Yl~e~l~~l~~~~~~~~v~~~~~~a~~~~~~~n~~~~~~~~~~g~~~~ad~~Vlat 160 (474)
T COG4529 81 QRYRDPEDINHDGQAYPPRRLFGEYLREQLAALLARGRQTRVRTIREEATSVRQDTNAGGYLVTTADGPSEIADIIVLAT 160 (474)
T ss_pred cccCChhhcCCccccccchhHHHHHHHHHHHHHHHhcCccceeEEeeeeecceeccCCceEEEecCCCCeeeeeEEEEec
Confidence 00000000 010 0 255666666655432 5667788889999999999
Q ss_pred CCCCCCCCchHHHHH-------HHH--HHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCc
Q 017664 113 GHVESVPKSRTERLS-------QYE--KDFEKVKSANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGP 174 (368)
Q Consensus 113 G~~~~~p~~~~~~~~-------~~~--~~~~~~~~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~ 174 (368)
|..+..++.-...+. +.. .....+....+|+|+|+|.+.++....+..+....+|+++.|+.
T Consensus 161 gh~~~~~~~~~~~~~~~~~~ia~~~~~~~ld~v~~~drVli~GsgLt~~D~v~~l~~~gh~g~It~iSRrG 231 (474)
T COG4529 161 GHSAPPADPAARDLKGSPRLIADPYPANALDGVDADDRVLIVGSGLTSIDQVLVLRRRGHKGPITAISRRG 231 (474)
T ss_pred cCCCCCcchhhhccCCCcceeccccCCcccccccCCCceEEecCCchhHHHHHHHhccCCccceEEEeccc
Confidence 998544443111111 110 12233444667999999999999999999765667899999874
No 97
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=99.10 E-value=1.1e-09 Score=102.09 Aligned_cols=55 Identities=22% Similarity=0.252 Sum_probs=39.1
Q ss_pred chhHHHHHHHHHcCCcEEEecceeeecccCCC---eEEcCCCcEEecCEEEEccCCCC
Q 017664 182 SRASQIALDWLTSKKVEVILNQSVTLNTISDG---LIETSSGETIDTDCHFMCTGKAM 236 (368)
Q Consensus 182 ~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~---~v~~~~g~~i~~d~vi~a~G~~p 236 (368)
..+.+.+.+.+++.||+++++++|..++.+++ .+.++++.++.+|.||+|+|-..
T Consensus 109 ~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~f~v~~~~~~~~~a~~vILAtGG~S 166 (409)
T PF03486_consen 109 SSVVDALLEELKRLGVEIHFNTRVKSIEKKEDGVFGVKTKNGGEYEADAVILATGGKS 166 (409)
T ss_dssp HHHHHHHHHHHHHHT-EEE-S--EEEEEEETTEEEEEEETTTEEEEESEEEE----SS
T ss_pred HHHHHHHHHHHHHcCCEEEeCCEeeeeeecCCceeEeeccCcccccCCEEEEecCCCC
Confidence 35668888899999999999999999987655 57776778999999999999653
No 98
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=99.08 E-value=3.4e-09 Score=92.75 Aligned_cols=119 Identities=12% Similarity=0.011 Sum_probs=71.7
Q ss_pred hhHHHHHHHHHcCCcEEEecceeeecccCCC-----eEEcC-----------CCcEEecCEEEEccCCCCC-chhhhccc
Q 017664 183 RASQIALDWLTSKKVEVILNQSVTLNTISDG-----LIETS-----------SGETIDTDCHFMCTGKAMA-SSWLRETI 245 (368)
Q Consensus 183 ~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~-----~v~~~-----------~g~~i~~d~vi~a~G~~p~-~~~~~~~~ 245 (368)
++...+.+.+.+.|++++.++.+..+..+++ .+.+. +..+++++.||.|||.... ..++....
T Consensus 101 el~~~L~~~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~~a~v~~~l~~~~ 180 (254)
T TIGR00292 101 EFISTLASKALQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGHDAEIVAVCAKKI 180 (254)
T ss_pred HHHHHHHHHHHHcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEEEEcCEEEEeecCCchHHHHHHHHc
Confidence 5667777788889999999999988765433 33332 2247999999999996533 33333321
Q ss_pred -cccccC---CCCc--------EEeCCCeeecCCCCeEEecccCCC--Cccc---hHHHHHHHHHHHHHHHHHHH
Q 017664 246 -LKDSLD---GRGR--------LMVDENLRVRGFKNVFAIGDITDI--PEIK---QGYLAQKHALVTAKNLKKLM 303 (368)
Q Consensus 246 -l~~~~~---~~g~--------i~vd~~~~~~~~~~ifa~GD~~~~--~~~~---~~~~a~~~g~~aa~~i~~~l 303 (368)
+..... ..+. ..|+.+-+. +|++|++|=.+.. +.|. +--.-.-+|+.||+-|+..|
T Consensus 181 ~~~~~~~~~~g~~~~~~~~~e~~~~~~t~~~--~~g~~~~gm~~~~~~~~~rmgp~fg~m~~sg~~~a~~~~~~~ 253 (254)
T TIGR00292 181 VLEDQVPKLGGEKSMWAEVAEVAIHENTREV--VPNLYVAGMAVAAVHGLPRMGPIFGGMLLSGKHVAEQILEKL 253 (254)
T ss_pred CcccCCcccCCchhhhhhhhHHHHHhccCcc--cCCEEEechhhhhhcCCCCcCchHHHHHHhhHHHHHHHHHHh
Confidence 211110 0011 122233333 8999999986542 1111 12234568999999998765
No 99
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=99.06 E-value=7.6e-09 Score=90.86 Aligned_cols=121 Identities=13% Similarity=0.015 Sum_probs=73.6
Q ss_pred hhHHHHHHHHHcCCcEEEecceeeecccCCC----eEEcC-----------CCcEEecCEEEEccCCCCC-chhhhccc-
Q 017664 183 RASQIALDWLTSKKVEVILNQSVTLNTISDG----LIETS-----------SGETIDTDCHFMCTGKAMA-SSWLRETI- 245 (368)
Q Consensus 183 ~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~----~v~~~-----------~g~~i~~d~vi~a~G~~p~-~~~~~~~~- 245 (368)
.+...+.+.+++.|++++.++.+..+..+++ .+... +..++.++.||.|+|.... ...+....
T Consensus 105 ~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~a~v~~~l~~~~~ 184 (257)
T PRK04176 105 EAAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHDAEVVSVLARKGP 184 (257)
T ss_pred HHHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCCcHHHHHHHHHcC
Confidence 5667777888889999999999988765433 22211 2247999999999996533 12221110
Q ss_pred -ccc------ccC--CCCcEEeCCCeeecCCCCeEEecccCCC--Cccc---hHHHHHHHHHHHHHHHHHHHcC
Q 017664 246 -LKD------SLD--GRGRLMVDENLRVRGFKNVFAIGDITDI--PEIK---QGYLAQKHALVTAKNLKKLMMG 305 (368)
Q Consensus 246 -l~~------~~~--~~g~i~vd~~~~~~~~~~ifa~GD~~~~--~~~~---~~~~a~~~g~~aa~~i~~~l~g 305 (368)
... +++ ......|+.+-+. +|++|++|=.+.. +.|. .--.-.-+|+.||+-|+..|..
T Consensus 185 ~~~~~~~g~~~~~~~~~e~~v~~~t~~~--~~g~~~~gm~~~~~~~~~rmg~~fg~m~~sg~~~a~~~~~~~~~ 256 (257)
T PRK04176 185 ELGIEVPGEKSMWAERGEKLVVENTGEV--YPGLYVAGMAANAVHGLPRMGPIFGGMLLSGKKVAELILEKLKK 256 (257)
T ss_pred CcccccCCccccccCchHHHHHhcCCeE--cCCEEEeehhhhhhcCCCccCchhHhHHHhHHHHHHHHHHHhhc
Confidence 000 111 1122344455555 8999999986543 1121 1223457899999999887753
No 100
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=98.96 E-value=2.7e-08 Score=92.13 Aligned_cols=143 Identities=17% Similarity=0.175 Sum_probs=91.6
Q ss_pred HHHHHHhhhCCCCeEEEEecCccccc-ccCchhHHHHHHHHHcCCcEEEecceeeecccCCC---eEEcCCC--cEEecC
Q 017664 153 ELAGEIAVDFPDKKVILVHRGPKLLE-FVGSRASQIALDWLTSKKVEVILNQSVTLNTISDG---LIETSSG--ETIDTD 226 (368)
Q Consensus 153 e~a~~l~~~~~~~~v~~i~~~~~~l~-~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~---~v~~~~g--~~i~~d 226 (368)
++-..|.+ ..+..|.-+-. +.| -....+.+.+.+.++++|++++.++.|.++..+++ .+.+.++ .++++|
T Consensus 237 ~~~~~L~~-~~g~~v~E~pt---lPPSv~G~RL~~aL~~~~~~~Gg~il~g~~V~~i~~~~~~v~~V~t~~g~~~~l~AD 312 (419)
T TIGR03378 237 ELLRELEQ-ATGLTLCELPT---MPPSLLGIRLEEALKHRFEQLGGVMLPGDRVLRAEFEGNRVTRIHTRNHRDIPLRAD 312 (419)
T ss_pred HHHHHHHH-HHCCCEEeCCC---CCCCCcHHHHHHHHHHHHHHCCCEEEECcEEEEEEeeCCeEEEEEecCCccceEECC
Confidence 34444544 24566654422 222 23456778889999999999999999998876666 3555665 479999
Q ss_pred EEEEccCCCCCchhhhc------ccccccc----C---------------CCCcEEeCCCeeec----CCCCeEEecccC
Q 017664 227 CHFMCTGKAMASSWLRE------TILKDSL----D---------------GRGRLMVDENLRVR----GFKNVFAIGDIT 277 (368)
Q Consensus 227 ~vi~a~G~~p~~~~~~~------~~l~~~~----~---------------~~g~i~vd~~~~~~----~~~~ifa~GD~~ 277 (368)
.+|+|+|..-...++++ .-+++.+ + ..=.+.+|+.+|.. -.+|+|++|-+.
T Consensus 313 ~vVLAaGaw~S~gL~a~l~~i~Epif~L~v~~~~~r~~W~~~~ff~~~p~~~~GV~~d~~lrp~~~g~~~~Nl~a~G~vL 392 (419)
T TIGR03378 313 HFVLASGSFFSNGLVAEFDKIYEPIFGLDVLQLPDRDQWYQHRFFAPHPFMQFGVKTDAQLRPSRGGQTIENLYAIGAVL 392 (419)
T ss_pred EEEEccCCCcCHHHHhhcCceeeeccCCCcCCCcchhhhcchhhcCCChhhhcCceEccccCccCCCcccccceEechhh
Confidence 99999997722222222 1111111 0 01136789888841 278999999998
Q ss_pred CCCccc---h-HHHHHHHHHHHHHHH
Q 017664 278 DIPEIK---Q-GYLAQKHALVTAKNL 299 (368)
Q Consensus 278 ~~~~~~---~-~~~a~~~g~~aa~~i 299 (368)
++..+. . .-.|+..|..||++|
T Consensus 393 ~G~d~~~~gcG~GVai~Ta~~aa~~i 418 (419)
T TIGR03378 393 GGYDPIFEGCGSGVAVSTALHAAEQI 418 (419)
T ss_pred cCCChHhcCCCchhHHHHHHHHHHhh
Confidence 876541 1 136788888888876
No 101
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=98.91 E-value=1.7e-08 Score=93.37 Aligned_cols=63 Identities=24% Similarity=0.156 Sum_probs=48.6
Q ss_pred CchhHHHHHHHHHcCCcEEEecceeeecccCCC---eEEcCCCcEEecCEEEEccCCCCCchhhhccc
Q 017664 181 GSRASQIALDWLTSKKVEVILNQSVTLNTISDG---LIETSSGETIDTDCHFMCTGKAMASSWLRETI 245 (368)
Q Consensus 181 ~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~---~v~~~~g~~i~~d~vi~a~G~~p~~~~~~~~~ 245 (368)
+..+.+.+.+.+++.|++++++++|+++..+++ .|++.+|+ +.+|.||+|+|... ..++...+
T Consensus 146 ~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~gv~~~~g~-i~ad~vV~a~G~~s-~~l~~~~~ 211 (358)
T PF01266_consen 146 PRRLIQALAAEAQRAGVEIRTGTEVTSIDVDGGRVTGVRTSDGE-IRADRVVLAAGAWS-PQLLPLLG 211 (358)
T ss_dssp HHHHHHHHHHHHHHTT-EEEESEEEEEEEEETTEEEEEEETTEE-EEECEEEE--GGGH-HHHHHTTT
T ss_pred ccchhhhhHHHHHHhhhhccccccccchhhcccccccccccccc-cccceeEecccccc-eeeeeccc
Confidence 447788888999999999999999999998777 38899997 99999999999763 33444443
No 102
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=98.91 E-value=1.5e-07 Score=91.09 Aligned_cols=45 Identities=20% Similarity=0.293 Sum_probs=37.5
Q ss_pred eCCCeeecCCCCeEEecccCCCCccchH-HHHHHHHHHHHHHHHHHHcCCC
Q 017664 258 VDENLRVRGFKNVFAIGDITDIPEIKQG-YLAQKHALVTAKNLKKLMMGRN 307 (368)
Q Consensus 258 vd~~~~~~~~~~ifa~GD~~~~~~~~~~-~~a~~~g~~aa~~i~~~l~g~~ 307 (368)
.++.|+++..+|+|.+|=+.+. ++ ..|..||-+|+-|.+..+. ++
T Consensus 350 L~~~Le~k~~~~lf~AGQinGt----~GYeEaaaqGl~AgiNaa~~~~-~~ 395 (618)
T PRK05192 350 LKPTLETKKIKGLFFAGQINGT----TGYEEAAAQGLIAGINAALKVQ-GE 395 (618)
T ss_pred cchhheecCCCCeEECcccCCC----hHHHHHHHHHHHHHHHHHHHhc-CC
Confidence 3457899889999999999976 34 4799999999999998877 44
No 103
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=98.91 E-value=2.2e-08 Score=94.07 Aligned_cols=42 Identities=21% Similarity=0.249 Sum_probs=37.1
Q ss_pred CCCcEEEECCChHHHHHHHHhhc-CCcEEEEcCCCceeeeccc
Q 017664 15 EKKKVVVIGGGVGGSLLAYHIQS-FADVVLIDEKEYFEITWAS 56 (368)
Q Consensus 15 ~~~~vvIIGaG~aGl~aA~~L~~-g~~v~lie~~~~~~~~~~~ 56 (368)
+++||+||||||||++||+.|++ |++|+|+|+.+..+.+...
T Consensus 2 ~~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~ 44 (396)
T COG0644 2 MEYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCC 44 (396)
T ss_pred ceeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCccc
Confidence 57899999999999999999985 8999999999988765443
No 104
>PRK09897 hypothetical protein; Provisional
Probab=98.91 E-value=9.6e-09 Score=98.87 Aligned_cols=145 Identities=19% Similarity=0.262 Sum_probs=81.6
Q ss_pred CCcEEEECCChHHHHHHHHhhc---CCcEEEEcCCCcee--eeccc-------eee---------------eeccc----
Q 017664 16 KKKVVVIGGGVGGSLLAYHIQS---FADVVLIDEKEYFE--ITWAS-------LRA---------------VVEPS---- 64 (368)
Q Consensus 16 ~~~vvIIGaG~aGl~aA~~L~~---g~~v~lie~~~~~~--~~~~~-------~~~---------------~~~~~---- 64 (368)
+++|+||||||+|+++|.+|.+ ..+|+|||++...| ..|.. +.. .....
T Consensus 1 m~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~G~ays~~~~~~~L~~N~~~~~~p~~~~~f~~Wl~~~~~~~ 80 (534)
T PRK09897 1 MKKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVGMPYSDEENSKMMLANIASIEIPPIYCTYLEWLQKQEDSH 80 (534)
T ss_pred CCeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCcceeecCCCChHHHHhcccccccCCChHHHHHHhhhhhHHH
Confidence 3589999999999999999963 56999999987655 11110 000 00000
Q ss_pred c----------cccceeecccc---c-------------Cc--eeEE-EeEEEEeecc----EEEecC-CeEEEecEEEE
Q 017664 65 F----------AVRSVINHGDY---L-------------SN--VKIV-VSTAVSITDT----EVVTAG-GQTFVYDYVVV 110 (368)
Q Consensus 65 ~----------~~~~~~~~~~~---~-------------~~--~~~~-~~~~~~~~~~----~v~~~~-g~~~~~d~lvl 110 (368)
+ ....+.++..+ + .+ +.+. ..+++.+... .+.+.+ +..+.+|+||+
T Consensus 81 ~~~~g~~~~~l~~~~f~PR~l~G~YL~~~f~~l~~~a~~~G~~V~v~~~~~V~~I~~~~~g~~V~t~~gg~~i~aD~VVL 160 (534)
T PRK09897 81 LQRYGVKKETLHDRQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITNAGVMLATNQDLPSETFDLAVI 160 (534)
T ss_pred HHhcCCcceeecCCccCCeecchHHHHHHHHHHHHHHHHcCCeEEEEECCEEEEEEEeCCEEEEEECCCCeEEEcCEEEE
Confidence 0 00011111111 0 01 3343 3367777532 445444 46789999999
Q ss_pred ecCCCCCCCCchHHHH-H-HHH-HHHHHHhcCCeEEEEcCchhHHHHHHHHhhh
Q 017664 111 ATGHVESVPKSRTERL-S-QYE-KDFEKVKSANSVLIVGGGPTGVELAGEIAVD 161 (368)
Q Consensus 111 AtG~~~~~p~~~~~~~-~-~~~-~~~~~~~~~~~v~VvG~g~~~~e~a~~l~~~ 161 (368)
|||..+..+......+ . .+. ...... .+.+|+|+|.|.+++|.+..|..+
T Consensus 161 AtGh~~p~~~~~~~~yi~~pw~~~~~~~i-~~~~V~I~GtGLt~iD~v~~Lt~~ 213 (534)
T PRK09897 161 ATGHVWPDEEEATRTYFPSPWSGLMEAKV-DACNVGIMGTSLSGLDAAMAVAIQ 213 (534)
T ss_pred CCCCCCCCCChhhccccCCCCcchhhcCC-CCCeEEEECCCHHHHHHHHHHHhc
Confidence 9998632111110000 0 000 111122 368999999999999999888754
No 105
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=98.89 E-value=2.1e-08 Score=92.85 Aligned_cols=63 Identities=17% Similarity=0.175 Sum_probs=50.8
Q ss_pred hhHHHHHHHHHcCCcEEEecceeeecccCCC---eEEcCCCcE-EecCEEEEccCCCCCchhhhcccc
Q 017664 183 RASQIALDWLTSKKVEVILNQSVTLNTISDG---LIETSSGET-IDTDCHFMCTGKAMASSWLRETIL 246 (368)
Q Consensus 183 ~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~---~v~~~~g~~-i~~d~vi~a~G~~p~~~~~~~~~l 246 (368)
++...+.+.++++|++++++++|+.++..++ .+.+.+|++ ++|+.||.|.|-.. ..+++..++
T Consensus 154 ~~t~~l~e~a~~~g~~i~ln~eV~~i~~~~dg~~~~~~~~g~~~~~ak~Vin~AGl~A-d~la~~~g~ 220 (429)
T COG0579 154 ELTRALAEEAQANGVELRLNTEVTGIEKQSDGVFVLNTSNGEETLEAKFVINAAGLYA-DPLAQMAGI 220 (429)
T ss_pred HHHHHHHHHHHHcCCEEEecCeeeEEEEeCCceEEEEecCCcEEEEeeEEEECCchhH-HHHHHHhCC
Confidence 5678888888899999999999999988655 567788876 99999999999763 445555554
No 106
>PRK06847 hypothetical protein; Provisional
Probab=98.87 E-value=1.8e-08 Score=94.17 Aligned_cols=55 Identities=22% Similarity=0.123 Sum_probs=46.1
Q ss_pred hhHHHHHHHHHcCCcEEEecceeeecccCCC--eEEcCCCcEEecCEEEEccCCCCC
Q 017664 183 RASQIALDWLTSKKVEVILNQSVTLNTISDG--LIETSSGETIDTDCHFMCTGKAMA 237 (368)
Q Consensus 183 ~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~--~v~~~~g~~i~~d~vi~a~G~~p~ 237 (368)
.+.+.+.+.+++.|++++.++++..++.+++ .+.+.+|+++++|.||.|+|..+.
T Consensus 108 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vI~AdG~~s~ 164 (375)
T PRK06847 108 ALARILADAARAAGADVRLGTTVTAIEQDDDGVTVTFSDGTTGRYDLVVGADGLYSK 164 (375)
T ss_pred HHHHHHHHHHHHhCCEEEeCCEEEEEEEcCCEEEEEEcCCCEEEcCEEEECcCCCcc
Confidence 5667777788888999999999998876655 677888999999999999998754
No 107
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=98.87 E-value=1.2e-07 Score=91.44 Aligned_cols=48 Identities=15% Similarity=0.184 Sum_probs=40.3
Q ss_pred eCCCeeecCCCCeEEecccCCCCccchHHHHHHHHHHHHHHHHHHHcCCCC
Q 017664 258 VDENLRVRGFKNVFAIGDITDIPEIKQGYLAQKHALVTAKNLKKLMMGRNK 308 (368)
Q Consensus 258 vd~~~~~~~~~~ifa~GD~~~~~~~~~~~~a~~~g~~aa~~i~~~l~g~~~ 308 (368)
++++|+++..+|+|.+|++.+... -..|..||.+|+.|++..+.|+++
T Consensus 348 l~~~le~k~~~gLf~AGqi~Gt~G---y~eAaa~Gl~Ag~naa~~~~~~~~ 395 (617)
T TIGR00136 348 LKPTLETKLIQGLFFAGQINGTTG---YEEAAAQGLMAGINAALKLQNKEP 395 (617)
T ss_pred CchhheeCCCCCeEEccccCCcch---HHHHHHHHHHHHHHHHHHhcCCCC
Confidence 456899977999999999988532 348999999999999999988764
No 108
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=98.83 E-value=1.4e-09 Score=106.98 Aligned_cols=98 Identities=9% Similarity=0.080 Sum_probs=66.3
Q ss_pred hcCCeEEEEcCch--hHHHHHHHHhhhCCCCeEEEEecCccccccc--------------CchhHHHHHHHHHcCCcEEE
Q 017664 137 KSANSVLIVGGGP--TGVELAGEIAVDFPDKKVILVHRGPKLLEFV--------------GSRASQIALDWLTSKKVEVI 200 (368)
Q Consensus 137 ~~~~~v~VvG~g~--~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~--------------~~~~~~~~~~~l~~~gv~i~ 200 (368)
...+++.++|++. ++.+++..+.. .+..++++.+..+++... ...+...+.+.+++.|++++
T Consensus 155 ~~~~~~~~~G~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~G~~l~~~L~~~~~~~Gv~i~ 232 (574)
T PRK12842 155 PPLKTITFIGMMFNSSNADLKHFFNA--TRSLTSFIYVAKRLATHLKDLALYRRGTQVTSGNALAARLAKSALDLGIPIL 232 (574)
T ss_pred CCcccccccceecccchHHHHHHHhh--ccchhHHHHHHHHHHhhHHHHhhccCCcccccHHHHHHHHHHHHHhCCCEEE
Confidence 3567888999988 67788877653 345555544433333211 13466778888899999999
Q ss_pred ecceeeecccCCC---eEEc--CCCc-EEecC-EEEEccCCCC
Q 017664 201 LNQSVTLNTISDG---LIET--SSGE-TIDTD-CHFMCTGKAM 236 (368)
Q Consensus 201 ~~~~v~~i~~~~~---~v~~--~~g~-~i~~d-~vi~a~G~~p 236 (368)
+++.++++..+++ .+.. .+++ .+.++ .||+|+|-.+
T Consensus 233 ~~~~v~~l~~~~g~V~GV~~~~~~~~~~i~a~k~VVlAtGg~~ 275 (574)
T PRK12842 233 TGTPARELLTEGGRVVGARVIDAGGERRITARRGVVLACGGFS 275 (574)
T ss_pred eCCEEEEEEeeCCEEEEEEEEcCCceEEEEeCCEEEEcCCCcc
Confidence 9999998876655 3433 2343 47786 7999999665
No 109
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=98.83 E-value=8.7e-08 Score=87.40 Aligned_cols=210 Identities=16% Similarity=0.189 Sum_probs=116.9
Q ss_pred CCcCCCCCCcEEEECCChHHHHHHHHhhc------CCcEEEEcCCCceeeeccceeeeecccccccceeecccccCceeE
Q 017664 9 TAAGLVEKKKVVVIGGGVGGSLLAYHIQS------FADVVLIDEKEYFEITWASLRAVVEPSFAVRSVINHGDYLSNVKI 82 (368)
Q Consensus 9 ~~~~~~~~~~vvIIGaG~aGl~aA~~L~~------g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (368)
....|...+|++||||||+|+.+|+.+.. ..++.++|......-..... .. ... ... ..
T Consensus 11 ~~~~~~~~~~vvivgag~~g~f~a~~~s~~ar~~~~~~i~~vd~g~~~~~r~~~~-------~~-~~~-~~c---~~--- 75 (486)
T COG2509 11 QEALMNAALDVVIVGAGPAGLFAAYELSGDARKVPILKIYVVDVGLDIEQRLCPK-------DE-KKL-EKC---PK--- 75 (486)
T ss_pred hHHHhhhccceEEECCCchHHHHHHHHhhhcccCCceEEEEEEeccchhhhhccc-------cc-cch-hhc---CC---
Confidence 33557778999999999999999998862 67899999876443111100 00 000 000 00
Q ss_pred EEeEEEEeeccEEEecCCeEEEecEEEEecCCCCCCCCchHHHHHHHHHHHHHH-hcCCeEEEEcCchhH-----HHHHH
Q 017664 83 VVSTAVSITDTEVVTAGGQTFVYDYVVVATGHVESVPKSRTERLSQYEKDFEKV-KSANSVLIVGGGPTG-----VELAG 156 (368)
Q Consensus 83 ~~~~~~~~~~~~v~~~~g~~~~~d~lvlAtG~~~~~p~~~~~~~~~~~~~~~~~-~~~~~v~VvG~g~~~-----~e~a~ 156 (368)
+++..+...-|-.-.+..+++| .+|..=+.-.+...+.....+.. ..+...+-.|++-.+ .+-..
T Consensus 76 -------~~~~~I~~G~GgaG~fs~g~ln--l~P~~Gg~~~~~~~d~~~~~~~~~~vd~~~vqfG~~g~~~~~~~~e~ik 146 (486)
T COG2509 76 -------CDPCPIVIGFGGAGLFSDGILN--LRPIRGGDVHERTKDTDEFWELVNLVDESNVQFGAPGAGTFSDLTEQIK 146 (486)
T ss_pred -------CCCceeEeccccccccccccee--cccccccchhhhhCChHHHHHHHhccchhheecCCCcCcccCCchhhhh
Confidence 2222222212222223334444 22321110011111222222222 223444556655111 11122
Q ss_pred HHhhhCCCCeEEEEe-cCcccccccCchhHHHHHHHHHcCCcEEEecceeeecccCCC---eEEcCCCcEEecCEEEEcc
Q 017664 157 EIAVDFPDKKVILVH-RGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVTLNTISDG---LIETSSGETIDTDCHFMCT 232 (368)
Q Consensus 157 ~l~~~~~~~~v~~i~-~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~---~v~~~~g~~i~~d~vi~a~ 232 (368)
.+..+..+....++. +.+++....-+.+...+.+.+++.|++++++++|..++..++ .+.+.+|+++++|.||+|+
T Consensus 147 d~e~~aa~a~~eil~~~~rHiGTD~l~~vvkni~~~l~~~G~ei~f~t~VeDi~~~~~~~~~v~~~~g~~i~~~~vvlA~ 226 (486)
T COG2509 147 DIEFRAAGAGEEILPIYQRHIGTDILPKVVKNIREYLESLGGEIRFNTEVEDIEIEDNEVLGVKLTKGEEIEADYVVLAP 226 (486)
T ss_pred HHHHHHhCCCceeeeccccccCccchHHHHHHHHHHHHhcCcEEEeeeEEEEEEecCCceEEEEccCCcEEecCEEEEcc
Confidence 222222344444443 334444455668888899999999999999999999988776 7889999999999999999
Q ss_pred CCCCCchhhhc
Q 017664 233 GKAMASSWLRE 243 (368)
Q Consensus 233 G~~p~~~~~~~ 243 (368)
|... .+|+..
T Consensus 227 Grsg-~dw~~~ 236 (486)
T COG2509 227 GRSG-RDWFEM 236 (486)
T ss_pred Ccch-HHHHHH
Confidence 9873 444443
No 110
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=98.82 E-value=4.7e-08 Score=93.51 Aligned_cols=44 Identities=18% Similarity=0.240 Sum_probs=37.2
Q ss_pred cCCCCCCcEEEECCChHHHHHHHHhhc-----CCcEEEEcCCCceeeec
Q 017664 11 AGLVEKKKVVVIGGGVGGSLLAYHIQS-----FADVVLIDEKEYFEITW 54 (368)
Q Consensus 11 ~~~~~~~~vvIIGaG~aGl~aA~~L~~-----g~~v~lie~~~~~~~~~ 54 (368)
+...++++++|||||.|||+||.+|.+ |.+|+|+|+++..|+..
T Consensus 17 ~~~~~~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~GG~~ 65 (576)
T PRK13977 17 PEGVDNKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVPGGSL 65 (576)
T ss_pred CCCCCCCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCCCCCc
Confidence 344456899999999999999999974 68999999999988654
No 111
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=98.81 E-value=3.7e-08 Score=91.13 Aligned_cols=48 Identities=23% Similarity=0.385 Sum_probs=40.3
Q ss_pred eCCCeeecCCCCeEEecccCCCCccchHHHHHHHHHHHHHHHHHHHcCCCC
Q 017664 258 VDENLRVRGFKNVFAIGDITDIPEIKQGYLAQKHALVTAKNLKKLMMGRNK 308 (368)
Q Consensus 258 vd~~~~~~~~~~ifa~GD~~~~~~~~~~~~a~~~g~~aa~~i~~~l~g~~~ 308 (368)
.+++|+++..||+|++|.+.+.-. -..|..+|.+|+.|+.+.+.|+++
T Consensus 321 l~~~l~~k~~~~l~~AGqi~g~~G---y~ea~a~G~~Ag~n~~~~~~g~~~ 368 (436)
T PRK05335 321 LDPTLQLKKRPNLFFAGQITGVEG---YVESAASGLLAGINAARLALGKEP 368 (436)
T ss_pred CchhccccCCCCEEeeeeecCchH---HHHHHHHHHHHHHHHHHHhcCCCC
Confidence 446899988999999999997632 248999999999999999998864
No 112
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=98.79 E-value=1.3e-07 Score=89.80 Aligned_cols=53 Identities=13% Similarity=0.163 Sum_probs=40.7
Q ss_pred hhHHHHHHHHHcCCcEEEecceeeecccCCCe--EEcCCCcEEecCEEEEccCCC
Q 017664 183 RASQIALDWLTSKKVEVILNQSVTLNTISDGL--IETSSGETIDTDCHFMCTGKA 235 (368)
Q Consensus 183 ~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~--v~~~~g~~i~~d~vi~a~G~~ 235 (368)
.+-+.+.+.+++.|++++.+++|..+..+++. ....+|.++.+|.||.|+|..
T Consensus 109 ~fD~~L~~~a~~~Gv~i~~~~~V~~i~~~~g~v~~v~~~g~~i~A~~VI~A~G~~ 163 (428)
T PRK10157 109 KFDAWLMEQAEEAGAQLITGIRVDNLVQRDGKVVGVEADGDVIEAKTVILADGVN 163 (428)
T ss_pred HHHHHHHHHHHHCCCEEECCCEEEEEEEeCCEEEEEEcCCcEEECCEEEEEeCCC
Confidence 34455667778899999999999988765552 234566789999999999974
No 113
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=98.77 E-value=8.3e-08 Score=90.25 Aligned_cols=55 Identities=11% Similarity=0.067 Sum_probs=46.0
Q ss_pred hhHHHHHHHHHcCCcEEEecceeeecccCCC--eEEcCCCcEEecCEEEEccCCCCC
Q 017664 183 RASQIALDWLTSKKVEVILNQSVTLNTISDG--LIETSSGETIDTDCHFMCTGKAMA 237 (368)
Q Consensus 183 ~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~--~v~~~~g~~i~~d~vi~a~G~~p~ 237 (368)
.+.+.+.+.+++.|++++.++++++++.+++ .+.+.+|+++++|.+|.|.|....
T Consensus 114 ~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vV~AdG~~S~ 170 (392)
T PRK08773 114 LLVDRLWAALHAAGVQLHCPARVVALEQDADRVRLRLDDGRRLEAALAIAADGAAST 170 (392)
T ss_pred HHHHHHHHHHHhCCCEEEcCCeEEEEEecCCeEEEEECCCCEEEeCEEEEecCCCch
Confidence 5567777888889999999999998876655 567788889999999999998753
No 114
>PRK10015 oxidoreductase; Provisional
Probab=98.76 E-value=1.5e-07 Score=89.19 Aligned_cols=38 Identities=29% Similarity=0.441 Sum_probs=33.8
Q ss_pred CCCcEEEECCChHHHHHHHHhhc-CCcEEEEcCCCceee
Q 017664 15 EKKKVVVIGGGVGGSLLAYHIQS-FADVVLIDEKEYFEI 52 (368)
Q Consensus 15 ~~~~vvIIGaG~aGl~aA~~L~~-g~~v~lie~~~~~~~ 52 (368)
.++||+||||||||++||+.|++ |++|+|||+++..+.
T Consensus 4 ~~~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~g~ 42 (429)
T PRK10015 4 DKFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGC 42 (429)
T ss_pred cccCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCc
Confidence 46899999999999999999985 999999999987553
No 115
>PRK08401 L-aspartate oxidase; Provisional
Probab=98.76 E-value=2.1e-07 Score=89.36 Aligned_cols=49 Identities=24% Similarity=0.314 Sum_probs=37.0
Q ss_pred CCcEEeCCCeeecCCCCeEEecccCC-C-Ccc-----chHHHHHHHHHHHHHHHHHH
Q 017664 253 RGRLMVDENLRVRGFKNVFAIGDITD-I-PEI-----KQGYLAQKHALVTAKNLKKL 302 (368)
Q Consensus 253 ~g~i~vd~~~~~~~~~~ifa~GD~~~-~-~~~-----~~~~~a~~~g~~aa~~i~~~ 302 (368)
.|.+.+|.+.|+ ..|++||+|+|+. . ... .....+.-.|+.|++++.+.
T Consensus 310 ~GGi~vd~~~~t-~IpGLyAaGE~a~~G~hG~nrl~gnsl~~~~v~G~~ag~~aa~~ 365 (466)
T PRK08401 310 IGGISVDTFYRT-GIKNLYAIGEAASNGFHGANRLASNSLLECIVSGLEVARTISRE 365 (466)
T ss_pred CCCEEECCCCcc-cCCCEEECccccccCCCCCCcchhHHHHHHHHHHHHHHHHHhhh
Confidence 478999999998 7999999999974 2 111 12345778899999998753
No 116
>PLN02463 lycopene beta cyclase
Probab=98.75 E-value=3.8e-08 Score=93.25 Aligned_cols=105 Identities=19% Similarity=0.230 Sum_probs=65.8
Q ss_pred CCCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeee--ccc----e----------------eeeeccc---ccc
Q 017664 14 VEKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEIT--WAS----L----------------RAVVEPS---FAV 67 (368)
Q Consensus 14 ~~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~--~~~----~----------------~~~~~~~---~~~ 67 (368)
...+||+||||||||+++|..|+ +|.+|+|+|+.+....+ +.. + ....... ...
T Consensus 26 ~~~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~~~~p~~~g~w~~~l~~lgl~~~l~~~w~~~~v~~~~~~~~~~~ 105 (447)
T PLN02463 26 SRVVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPLSIWPNNYGVWVDEFEALGLLDCLDTTWPGAVVYIDDGKKKDLD 105 (447)
T ss_pred ccCceEEEECCCHHHHHHHHHHHHCCCeEEEeccCccchhccccchHHHHHHHCCcHHHHHhhCCCcEEEEeCCCCcccc
Confidence 34689999999999999999997 49999999997643211 100 0 0000000 000
Q ss_pred cce--eecccc---------cCceeEEEeEEEEeecc----EEEecCCeEEEecEEEEecCCCCCC
Q 017664 68 RSV--INHGDY---------LSNVKIVVSTAVSITDT----EVVTAGGQTFVYDYVVVATGHVESV 118 (368)
Q Consensus 68 ~~~--~~~~~~---------~~~~~~~~~~~~~~~~~----~v~~~~g~~~~~d~lvlAtG~~~~~ 118 (368)
..+ ....++ ..++++....+..++.. .|.+.+|.++++|.||.|+|..+.+
T Consensus 106 ~~y~~V~R~~L~~~Ll~~~~~~GV~~~~~~V~~I~~~~~~~~V~~~dG~~i~A~lVI~AdG~~s~l 171 (447)
T PLN02463 106 RPYGRVNRKKLKSKMLERCIANGVQFHQAKVKKVVHEESKSLVVCDDGVKIQASLVLDATGFSRCL 171 (447)
T ss_pred CcceeEEHHHHHHHHHHHHhhcCCEEEeeEEEEEEEcCCeEEEEECCCCEEEcCEEEECcCCCcCc
Confidence 000 000000 12567777777776532 5777888889999999999998544
No 117
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.75 E-value=1.1e-07 Score=91.47 Aligned_cols=53 Identities=17% Similarity=0.174 Sum_probs=46.6
Q ss_pred chhHHHHHHHHHcCCcEEEecceeeecccCCC---eEEcCCCcEEecCEEEEccCC
Q 017664 182 SRASQIALDWLTSKKVEVILNQSVTLNTISDG---LIETSSGETIDTDCHFMCTGK 234 (368)
Q Consensus 182 ~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~---~v~~~~g~~i~~d~vi~a~G~ 234 (368)
..+.+.+.+.+++.|++|+++++|++|..+++ ++.+.+|+.+++|.||.....
T Consensus 224 ~al~~aL~~~~~~~Gg~I~~~~~V~~I~v~~g~g~~~~~~~g~~~~ad~vv~~~~~ 279 (487)
T COG1233 224 GALVDALAELAREHGGEIRTGAEVSQILVEGGKGVGVRTSDGENIEADAVVSNADP 279 (487)
T ss_pred HHHHHHHHHHHHHcCCEEECCCceEEEEEeCCcceEEeccccceeccceeEecCch
Confidence 37788899999999999999999999998875 677777778999999998776
No 118
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=98.75 E-value=9.7e-07 Score=81.65 Aligned_cols=49 Identities=18% Similarity=0.224 Sum_probs=38.1
Q ss_pred CcEEeCCCeeecCCCCeEEecccCCCCcc-------chHHHHHHHHHHHHHHHHHHH
Q 017664 254 GRLMVDENLRVRGFKNVFAIGDITDIPEI-------KQGYLAQKHALVTAKNLKKLM 303 (368)
Q Consensus 254 g~i~vd~~~~~~~~~~ifa~GD~~~~~~~-------~~~~~a~~~g~~aa~~i~~~l 303 (368)
|.|.||.+.|| +.|++||+|.|+..... ++--.+.-.|..+|++|...+
T Consensus 342 GGI~vD~~GrT-si~gLYAiGEvA~TGlHGANRLASNSLLE~vV~g~~aA~~i~~~~ 397 (518)
T COG0029 342 GGIAVDANGRT-SIPGLYAIGEVACTGLHGANRLASNSLLECLVFGKRAAEDIAGRL 397 (518)
T ss_pred ccEEECCCCcc-cCcccEEeeeecccccccchhhhhhhHHHHHHHHHHHHHHhhccc
Confidence 78999999999 89999999999865321 123357777888888888654
No 119
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=98.74 E-value=9.5e-08 Score=86.29 Aligned_cols=96 Identities=21% Similarity=0.286 Sum_probs=76.4
Q ss_pred eEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcc---c--------cccc-----CchhHHHHHHHHHcCCcEEEecce
Q 017664 141 SVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPK---L--------LEFV-----GSRASQIALDWLTSKKVEVILNQS 204 (368)
Q Consensus 141 ~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~---~--------l~~~-----~~~~~~~~~~~l~~~gv~i~~~~~ 204 (368)
+++|||+|++|+++|..|.+ .+.+|+++++.+. + .|.+ +.++...+.+.+++.|+++++ +.
T Consensus 2 dvvIIG~G~aGl~aA~~l~~--~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~-~~ 78 (300)
T TIGR01292 2 DVIIIGAGPAGLTAAIYAAR--ANLKTLIIEGMEPGGQLTTTTEVENYPGFPEGISGPELMEKMKEQAVKFGAEIIY-EE 78 (300)
T ss_pred cEEEECCCHHHHHHHHHHHH--CCCCEEEEeccCCCcceeecccccccCCCCCCCChHHHHHHHHHHHHHcCCeEEE-EE
Confidence 68999999999999999885 4789999997641 1 1222 245667788889999999998 78
Q ss_pred eeecccCCC--eEEcCCCcEEecCEEEEccCCCCCch
Q 017664 205 VTLNTISDG--LIETSSGETIDTDCHFMCTGKAMASS 239 (368)
Q Consensus 205 v~~i~~~~~--~v~~~~g~~i~~d~vi~a~G~~p~~~ 239 (368)
+..++.+++ .+.+.+++++++|.+|+|+|..|..+
T Consensus 79 v~~v~~~~~~~~v~~~~~~~~~~d~liiAtG~~~~~~ 115 (300)
T TIGR01292 79 VIKVDLSDRPFKVKTGDGKEYTAKAVIIATGASARKL 115 (300)
T ss_pred EEEEEecCCeeEEEeCCCCEEEeCEEEECCCCCcccC
Confidence 888877655 67777788999999999999987643
No 120
>PRK08163 salicylate hydroxylase; Provisional
Probab=98.74 E-value=2.3e-07 Score=87.38 Aligned_cols=54 Identities=15% Similarity=0.087 Sum_probs=42.4
Q ss_pred hhHHHHHHHHHcC-CcEEEecceeeecccCCC--eEEcCCCcEEecCEEEEccCCCC
Q 017664 183 RASQIALDWLTSK-KVEVILNQSVTLNTISDG--LIETSSGETIDTDCHFMCTGKAM 236 (368)
Q Consensus 183 ~~~~~~~~~l~~~-gv~i~~~~~v~~i~~~~~--~v~~~~g~~i~~d~vi~a~G~~p 236 (368)
.+.+.+.+.+++. +++++.++++.+++.+++ .+.+.+|+++.+|.+|.|.|...
T Consensus 110 ~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S 166 (396)
T PRK08163 110 DIHLSLLEAVLDHPLVEFRTSTHVVGIEQDGDGVTVFDQQGNRWTGDALIGCDGVKS 166 (396)
T ss_pred HHHHHHHHHHHhcCCcEEEeCCEEEEEecCCCceEEEEcCCCEEecCEEEECCCcCh
Confidence 3455666666665 599999999998876655 66778888999999999999753
No 121
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=98.70 E-value=1.6e-07 Score=88.43 Aligned_cols=99 Identities=17% Similarity=0.225 Sum_probs=75.4
Q ss_pred CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccc---ccCchhH---------HHHHHHHHcCCcEEEecceee
Q 017664 139 ANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLE---FVGSRAS---------QIALDWLTSKKVEVILNQSVT 206 (368)
Q Consensus 139 ~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~---~~~~~~~---------~~~~~~l~~~gv~i~~~~~v~ 206 (368)
.++++|||+|+.|+.+|..|++.....+|+++++.+.+.. .....+. ..-.+.+++.||+++.++.|.
T Consensus 3 ~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~~y~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~V~ 82 (396)
T PRK09754 3 EKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLPYERPPLSKSMLLEDSPQLQQVLPANWWQENNVHLHSGVTIK 82 (396)
T ss_pred cCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCCCCCCCCCCHHHHCCCCccccccCCHHHHHHCCCEEEcCCEEE
Confidence 5689999999999999999987655668999987754311 1111110 001345677899999999998
Q ss_pred ecccCCCeEEcCCCcEEecCEEEEccCCCCC
Q 017664 207 LNTISDGLIETSSGETIDTDCHFMCTGKAMA 237 (368)
Q Consensus 207 ~i~~~~~~v~~~~g~~i~~d~vi~a~G~~p~ 237 (368)
.+..++..+.+.+|+++.+|.+|+|||.+|.
T Consensus 83 ~id~~~~~v~~~~g~~~~yd~LViATGs~~~ 113 (396)
T PRK09754 83 TLGRDTRELVLTNGESWHWDQLFIATGAAAR 113 (396)
T ss_pred EEECCCCEEEECCCCEEEcCEEEEccCCCCC
Confidence 8887766888888989999999999999875
No 122
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=98.70 E-value=1.5e-07 Score=82.53 Aligned_cols=191 Identities=15% Similarity=0.238 Sum_probs=106.2
Q ss_pred cCCCCCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceee--eccceeeeeccccccccee-----ecccccCceeE
Q 017664 11 AGLVEKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEI--TWASLRAVVEPSFAVRSVI-----NHGDYLSNVKI 82 (368)
Q Consensus 11 ~~~~~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~--~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~ 82 (368)
..|.+..|++|||||.-|+++|++|+ +|.+++++|+.+.... ........+++.+.+..+. .+..|...
T Consensus 2 ~~~~~~~~viiVGAGVfG~stAyeLaK~g~killLeqf~~ph~~GSShg~sRIiR~~Y~e~~Y~~m~~ea~e~W~~~--- 78 (399)
T KOG2820|consen 2 SEMVKSRDVIIVGAGVFGLSTAYELAKRGDKILLLEQFPLPHSRGSSHGISRIIRPAYAEDKYMSMVLEAYEKWRNL--- 78 (399)
T ss_pred cccccceeEEEEcccccchHHHHHHHhcCCeEEEEeccCCCcccCcccCcceeechhhhhHHHHHHHHHHHHHHHhC---
Confidence 35667889999999999999999998 5999999998864321 1122222333333222111 11111110
Q ss_pred EEeEEEEeeccEEEecCCeEEEecEEEEecCCCCCCCCchHHHHHHHHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhC
Q 017664 83 VVSTAVSITDTEVVTAGGQTFVYDYVVVATGHVESVPKSRTERLSQYEKDFEKVKSANSVLIVGGGPTGVELAGEIAVDF 162 (368)
Q Consensus 83 ~~~~~~~~~~~~v~~~~g~~~~~d~lvlAtG~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~VvG~g~~~~e~a~~l~~~~ 162 (368)
....|..+.+....+-.|.. +...+.+......+-....+++ ...++.+++
T Consensus 79 -------------~~~~g~~~~~~t~~~~~~~~------e~~~~~sv~~~~k~~~l~h~~l----------~seEvrk~f 129 (399)
T KOG2820|consen 79 -------------PEESGVKLHCGTGLLISGDP------ERQRLDSVAANLKRKGLAHSVL----------ISEEVRKRF 129 (399)
T ss_pred -------------hhhhceeecccceeeecCcH------HHHHHHHHHHHHhhhhhhhhhh----------hHHHHHHhC
Confidence 00112233333222222211 1123333333322221122221 245667767
Q ss_pred CC-Ce-----EEEEecCcccccccCchhHHHHHHHHHcCCcEEEecceeeecccC----CC-eEEcCCCcEEecCEEEEc
Q 017664 163 PD-KK-----VILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVTLNTIS----DG-LIETSSGETIDTDCHFMC 231 (368)
Q Consensus 163 ~~-~~-----v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~----~~-~v~~~~g~~i~~d~vi~a 231 (368)
|+ .+ +-+++..... -........++..+++.|+.++.+..++.++.. .. .|++.+|..+.++.+|++
T Consensus 130 P~~~~l~d~~~G~~n~~gGv--i~a~kslk~~~~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t 207 (399)
T KOG2820|consen 130 PSNIPLPDGWQGVVNESGGV--INAAKSLKALQDKARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFT 207 (399)
T ss_pred CCCccCCcchhhcccccccE--eeHHHHHHHHHHHHHHcCeEEecCcceeeEeeccCCCceeEEEeccCCeeecceEEEE
Confidence 64 11 1111111111 123355677888999999999999999877732 22 789999999999999999
Q ss_pred cCCC
Q 017664 232 TGKA 235 (368)
Q Consensus 232 ~G~~ 235 (368)
+|.-
T Consensus 208 ~GaW 211 (399)
T KOG2820|consen 208 VGAW 211 (399)
T ss_pred ecHH
Confidence 9965
No 123
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.70 E-value=2e-07 Score=87.94 Aligned_cols=55 Identities=13% Similarity=0.058 Sum_probs=45.8
Q ss_pred hhHHHHHHHHHcCCcEEEecceeeecccCCC--eEEcCCCcEEecCEEEEccCCCCC
Q 017664 183 RASQIALDWLTSKKVEVILNQSVTLNTISDG--LIETSSGETIDTDCHFMCTGKAMA 237 (368)
Q Consensus 183 ~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~--~v~~~~g~~i~~d~vi~a~G~~p~ 237 (368)
.+.+.+.+.+++.|++++.+++++.++.+++ .+.+.+|+++.+|+||.|.|....
T Consensus 112 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vI~AdG~~S~ 168 (403)
T PRK07333 112 VLINALRKRAEALGIDLREATSVTDFETRDEGVTVTLSDGSVLEARLLVAADGARSK 168 (403)
T ss_pred HHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCEEEEEECCCCEEEeCEEEEcCCCChH
Confidence 5667777888888999999999998876655 577788889999999999997643
No 124
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=98.69 E-value=1.5e-07 Score=88.03 Aligned_cols=52 Identities=12% Similarity=0.083 Sum_probs=42.7
Q ss_pred hhHHHHHHHHHcCCcEEEecceeeecccCCC--eEEcCCCcEEecCEEEEccCCC
Q 017664 183 RASQIALDWLTSKKVEVILNQSVTLNTISDG--LIETSSGETIDTDCHFMCTGKA 235 (368)
Q Consensus 183 ~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~--~v~~~~g~~i~~d~vi~a~G~~ 235 (368)
.+...+.+.+++.|++++.+++|..++.+++ .+.+.++ ++.+|.||+|+|..
T Consensus 146 ~~~~~l~~~~~~~g~~~~~~~~V~~i~~~~~~~~v~~~~~-~i~a~~vV~aaG~~ 199 (380)
T TIGR01377 146 KALRALQELAEAHGATVRDGTKVVEIEPTELLVTVKTTKG-SYQANKLVVTAGAW 199 (380)
T ss_pred HHHHHHHHHHHHcCCEEECCCeEEEEEecCCeEEEEeCCC-EEEeCEEEEecCcc
Confidence 5567777888889999999999999887655 5666666 79999999999965
No 125
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=98.69 E-value=4.7e-07 Score=85.03 Aligned_cols=53 Identities=8% Similarity=0.026 Sum_probs=42.6
Q ss_pred hhHHHHHHHHHcCC-cEEEecceeeecccCCC--eEEcCCCcEEecCEEEEccCCCC
Q 017664 183 RASQIALDWLTSKK-VEVILNQSVTLNTISDG--LIETSSGETIDTDCHFMCTGKAM 236 (368)
Q Consensus 183 ~~~~~~~~~l~~~g-v~i~~~~~v~~i~~~~~--~v~~~~g~~i~~d~vi~a~G~~p 236 (368)
.+.+.+.+.+++.| ++++ ++.++.++.+++ .+.+.+|+++.+|.+|.|.|...
T Consensus 112 ~l~~~L~~~~~~~~~v~~~-~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~adG~~S 167 (388)
T PRK07608 112 LIERALWAALRFQPNLTWF-PARAQGLEVDPDAATLTLADGQVLRADLVVGADGAHS 167 (388)
T ss_pred HHHHHHHHHHHhCCCcEEE-cceeEEEEecCCeEEEEECCCCEEEeeEEEEeCCCCc
Confidence 55667777788877 9999 888888875544 67778888899999999999864
No 126
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=98.68 E-value=1.9e-07 Score=87.64 Aligned_cols=53 Identities=19% Similarity=0.172 Sum_probs=44.4
Q ss_pred hhHHHHHHHHHcCC-cEEEecceeeecccCCC--eEEcC-CCcEEecCEEEEccCCC
Q 017664 183 RASQIALDWLTSKK-VEVILNQSVTLNTISDG--LIETS-SGETIDTDCHFMCTGKA 235 (368)
Q Consensus 183 ~~~~~~~~~l~~~g-v~i~~~~~v~~i~~~~~--~v~~~-~g~~i~~d~vi~a~G~~ 235 (368)
.+.+.+.+.+++.+ |+++.++.|+.++.+++ .+++. +|++++||++|-|=|..
T Consensus 105 ~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~~v~v~l~~dG~~~~a~llVgADG~~ 161 (387)
T COG0654 105 DLLNALLEAARALPNVTLRFGAEVEAVEQDGDGVTVTLSFDGETLDADLLVGADGAN 161 (387)
T ss_pred HHHHHHHHHHhhCCCcEEEcCceEEEEEEcCCceEEEEcCCCcEEecCEEEECCCCc
Confidence 56677788887665 99999999999988765 56667 99999999999999965
No 127
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=98.68 E-value=7.4e-07 Score=83.07 Aligned_cols=47 Identities=15% Similarity=0.258 Sum_probs=39.4
Q ss_pred CCCeeecCCCCeEEecccCCCCccchHHHHHHHHHHHHHHHHHHHcCCCC
Q 017664 259 DENLRVRGFKNVFAIGDITDIPEIKQGYLAQKHALVTAKNLKKLMMGRNK 308 (368)
Q Consensus 259 d~~~~~~~~~~ifa~GD~~~~~~~~~~~~a~~~g~~aa~~i~~~l~g~~~ 308 (368)
+++|+++..||+|.+|=+.+... -..|..||-+|+-|+++.+.|+++
T Consensus 321 ~~~l~~k~~~~lf~AGQi~G~~G---Y~Eaaa~Gl~agina~~~~~~~~~ 367 (433)
T TIGR00137 321 TASLHFKDRQTLFFAGQLTGVEG---YVASTAGGWLAGINAARLALGEPL 367 (433)
T ss_pred hHHhccCCCCCEEECcccccchH---HHHHHHHHHHHHHHHHHHHcCCCC
Confidence 34688888999999999997632 247999999999999999999864
No 128
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=98.67 E-value=3.6e-07 Score=82.25 Aligned_cols=54 Identities=13% Similarity=0.089 Sum_probs=41.9
Q ss_pred hhHHHHHHHHHcCCcEEEecceeeecccCCC--eEEcC-CCcEEecCEEEEccCCCC
Q 017664 183 RASQIALDWLTSKKVEVILNQSVTLNTISDG--LIETS-SGETIDTDCHFMCTGKAM 236 (368)
Q Consensus 183 ~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~--~v~~~-~g~~i~~d~vi~a~G~~p 236 (368)
.+.+.+.+.+++.|++++.+++++.+..+++ .+.+. ++.++++|++|.|+|...
T Consensus 92 ~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~a~~vv~a~G~~s 148 (295)
T TIGR02032 92 AFDEQLAERAQEAGAELRLGTTVLDVEIHDDRVVVIVRGGEGTVTAKIVIGADGSRS 148 (295)
T ss_pred HHHHHHHHHHHHcCCEEEeCcEEeeEEEeCCEEEEEEcCccEEEEeCEEEECCCcch
Confidence 4567777888889999999999998876655 34333 345899999999999763
No 129
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=98.66 E-value=5.8e-07 Score=84.91 Aligned_cols=56 Identities=13% Similarity=0.022 Sum_probs=47.9
Q ss_pred chhHHHHHHHHHcCCcEEEecceeeecccCC-C---eEEcCCCcEEecCEEEEccCCCCC
Q 017664 182 SRASQIALDWLTSKKVEVILNQSVTLNTISD-G---LIETSSGETIDTDCHFMCTGKAMA 237 (368)
Q Consensus 182 ~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~-~---~v~~~~g~~i~~d~vi~a~G~~p~ 237 (368)
.++.+.+.+.++..|.+++++++|++|..++ + .+++.+|+++.++.||....+.|.
T Consensus 232 g~L~qal~r~~a~~Gg~~~L~~~V~~I~~~~~g~~~~V~~~~Ge~i~a~~VV~~~s~~p~ 291 (443)
T PTZ00363 232 GGLPQAFSRLCAIYGGTYMLNTPVDEVVFDENGKVCGVKSEGGEVAKCKLVICDPSYFPD 291 (443)
T ss_pred HHHHHHHHHHHHHcCcEEEcCCeEEEEEEcCCCeEEEEEECCCcEEECCEEEECcccccc
Confidence 3677888888899999999999999997664 3 588899999999999998887765
No 130
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=98.65 E-value=6e-07 Score=84.89 Aligned_cols=52 Identities=19% Similarity=0.050 Sum_probs=40.3
Q ss_pred hhHHHHHHHHHcCCcEEEecceeeecccC-CC---eEEcCCCcEEecCEEEEccCCC
Q 017664 183 RASQIALDWLTSKKVEVILNQSVTLNTIS-DG---LIETSSGETIDTDCHFMCTGKA 235 (368)
Q Consensus 183 ~~~~~~~~~l~~~gv~i~~~~~v~~i~~~-~~---~v~~~~g~~i~~d~vi~a~G~~ 235 (368)
.+...+.+.+++.|++++.+++|..++.. ++ .+.+.+| ++.++.+|+++|-.
T Consensus 184 ~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~~~v~t~~g-~i~a~~vVvaagg~ 239 (407)
T TIGR01373 184 AVAWGYARGADRRGVDIIQNCEVTGFIRRDGGRVIGVETTRG-FIGAKKVGVAVAGH 239 (407)
T ss_pred HHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEeCCc-eEECCEEEECCChh
Confidence 44555778889999999999999998643 33 4677777 69999998887754
No 131
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=98.65 E-value=1.8e-07 Score=89.60 Aligned_cols=62 Identities=15% Similarity=0.092 Sum_probs=47.3
Q ss_pred hhHHHHHHHHHc----CC--cEEEecceeeecccCCC---eEEcCCCcEEecCEEEEccCCCCCchhhhcccc
Q 017664 183 RASQIALDWLTS----KK--VEVILNQSVTLNTISDG---LIETSSGETIDTDCHFMCTGKAMASSWLRETIL 246 (368)
Q Consensus 183 ~~~~~~~~~l~~----~g--v~i~~~~~v~~i~~~~~---~v~~~~g~~i~~d~vi~a~G~~p~~~~~~~~~l 246 (368)
.+...+.+.+++ .| ++++++++|+.++.+++ .|.+.+| ++.+|.||+|+|.. ...+++..++
T Consensus 212 ~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~~~~~~V~T~~G-~i~A~~VVvaAG~~-S~~La~~~Gi 282 (497)
T PTZ00383 212 KLSESFVKHARRDALVPGKKISINLNTEVLNIERSNDSLYKIHTNRG-EIRARFVVVSACGY-SLLFAQKMGY 282 (497)
T ss_pred HHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecCCCeEEEEECCC-EEEeCEEEECcChh-HHHHHHHhCC
Confidence 567778888888 77 88999999999987633 5777777 69999999999966 2345554443
No 132
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=98.65 E-value=4.1e-07 Score=85.52 Aligned_cols=70 Identities=21% Similarity=0.264 Sum_probs=50.1
Q ss_pred CCeEEEEecCcccccc--cCchhHHHHHHHHHcCCcEEEecceeeecccCCC--eEEcCCCcEEecCEEEEccCCC
Q 017664 164 DKKVILVHRGPKLLEF--VGSRASQIALDWLTSKKVEVILNQSVTLNTISDG--LIETSSGETIDTDCHFMCTGKA 235 (368)
Q Consensus 164 ~~~v~~i~~~~~~l~~--~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~--~v~~~~g~~i~~d~vi~a~G~~ 235 (368)
+.+++....+ ++.|. ....+.+.+.+.+++.|+++++++.+..++.+++ .+.+ +++++.+|.||+|+|..
T Consensus 86 Gv~~~~~~~g-~~~p~~~~a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~~v~~-~~~~i~ad~VIlAtG~~ 159 (400)
T TIGR00275 86 GLELKVEEDG-RVFPCSDSAADVLDALLNELKELGVEILTNSKVKSIKKDDNGFGVET-SGGEYEADKVILATGGL 159 (400)
T ss_pred CCeeEEecCC-EeECCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCeEEEEE-CCcEEEcCEEEECCCCc
Confidence 5555544322 23322 2356778888899999999999999998876554 4555 45689999999999964
No 133
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=98.65 E-value=8.8e-08 Score=87.79 Aligned_cols=45 Identities=18% Similarity=0.254 Sum_probs=37.0
Q ss_pred CCCeeecCCCCeEEecccCCCCccchHHHHHHHHHHHHHHHHHHHcCC
Q 017664 259 DENLRVRGFKNVFAIGDITDIPEIKQGYLAQKHALVTAKNLKKLMMGR 306 (368)
Q Consensus 259 d~~~~~~~~~~ifa~GD~~~~~~~~~~~~a~~~g~~aa~~i~~~l~g~ 306 (368)
+.+|+++..||+|++|+.++... -..|..||-+|+.|+++.++|+
T Consensus 347 ~~~l~~k~~~~lf~AGqi~G~~G---y~eaaa~G~~ag~na~~~~~g~ 391 (392)
T PF01134_consen 347 LNTLETKKIPGLFFAGQINGTEG---YEEAAAQGLIAGINAARRLQGK 391 (392)
T ss_dssp BTTSBBSSSBTEEE-GGGGTB-S---HHHHHHHHHHHHHHHHHHHTTS
T ss_pred ccceEECCCCCceECCCCcchhH---HHHHHHHHHHHHHHHHHHHcCC
Confidence 34799988999999999998632 3578999999999999999876
No 134
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.64 E-value=2.4e-07 Score=87.48 Aligned_cols=54 Identities=13% Similarity=0.195 Sum_probs=44.3
Q ss_pred hhHHHHHHHHHcCCcEEEecceeeecccCCC--eEEcCCCcEEecCEEEEccCCCC
Q 017664 183 RASQIALDWLTSKKVEVILNQSVTLNTISDG--LIETSSGETIDTDCHFMCTGKAM 236 (368)
Q Consensus 183 ~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~--~v~~~~g~~i~~d~vi~a~G~~p 236 (368)
.+.+.+.+.+++.|++++.++++..++.+++ .+.+.+|+++.+|++|.|.|...
T Consensus 113 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vVgAdG~~S 168 (405)
T PRK05714 113 VVQDALLERLHDSDIGLLANARLEQMRRSGDDWLLTLADGRQLRAPLVVAADGANS 168 (405)
T ss_pred HHHHHHHHHHhcCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCc
Confidence 4456667777888999999999998876655 57778888999999999999764
No 135
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=98.63 E-value=3e-07 Score=89.15 Aligned_cols=57 Identities=21% Similarity=0.229 Sum_probs=43.0
Q ss_pred hhHHHHHHHHHcCCcEEEecceeeecccCCC---eEE--cCCC--cEEecCEEEEccC-CCCCch
Q 017664 183 RASQIALDWLTSKKVEVILNQSVTLNTISDG---LIE--TSSG--ETIDTDCHFMCTG-KAMASS 239 (368)
Q Consensus 183 ~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~---~v~--~~~g--~~i~~d~vi~a~G-~~p~~~ 239 (368)
.+...+.+.+++.|+++++++.++++..+++ .+. ..++ .++.++.||+|+| +..+.+
T Consensus 191 ~l~~~L~~~~~~~gv~i~~~t~v~~l~~~~g~V~Gv~~~~~~g~~~~i~a~~VVlAtGG~~~n~~ 255 (506)
T PRK06481 191 YLVDGLLKNVQERKIPLFVNADVTKITEKDGKVTGVKVKINGKETKTISSKAVVVTTGGFGANKD 255 (506)
T ss_pred HHHHHHHHHHHHcCCeEEeCCeeEEEEecCCEEEEEEEEeCCCeEEEEecCeEEEeCCCcccCHH
Confidence 4677788888999999999999999876655 233 3443 3688999999998 555543
No 136
>PRK08013 oxidoreductase; Provisional
Probab=98.63 E-value=4e-07 Score=85.84 Aligned_cols=54 Identities=4% Similarity=0.044 Sum_probs=42.7
Q ss_pred hhHHHHHHHHHcC-CcEEEecceeeecccCCC--eEEcCCCcEEecCEEEEccCCCC
Q 017664 183 RASQIALDWLTSK-KVEVILNQSVTLNTISDG--LIETSSGETIDTDCHFMCTGKAM 236 (368)
Q Consensus 183 ~~~~~~~~~l~~~-gv~i~~~~~v~~i~~~~~--~v~~~~g~~i~~d~vi~a~G~~p 236 (368)
.+...+.+.+++. |++++.++++..++.+++ .+.+.+|+++++|+||-|-|...
T Consensus 112 ~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~a~lvVgADG~~S 168 (400)
T PRK08013 112 VIHYALWQKAQQSSDITLLAPAELQQVAWGENEAFLTLKDGSMLTARLVVGADGANS 168 (400)
T ss_pred HHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCeEEEEEcCCCEEEeeEEEEeCCCCc
Confidence 4455666666664 899999999998876555 56778899999999999999764
No 137
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=98.63 E-value=8.5e-07 Score=86.23 Aligned_cols=54 Identities=17% Similarity=0.129 Sum_probs=46.3
Q ss_pred chhHHHHHHHHHcCCcEEEecceeeecccCCC---eEEcCCCcEEecCEEEEccCCC
Q 017664 182 SRASQIALDWLTSKKVEVILNQSVTLNTISDG---LIETSSGETIDTDCHFMCTGKA 235 (368)
Q Consensus 182 ~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~---~v~~~~g~~i~~d~vi~a~G~~ 235 (368)
..+.+.+.+.+++.|+++++++.|.+|..+++ .|++.+|+++++|.||++++..
T Consensus 219 ~~l~~al~~~~~~~G~~i~~~~~V~~i~~~~~~~~~V~~~~g~~~~ad~VI~a~~~~ 275 (502)
T TIGR02734 219 GALVAAMAKLAEDLGGELRLNAEVIRIETEGGRATAVHLADGERLDADAVVSNADLH 275 (502)
T ss_pred HHHHHHHHHHHHHCCCEEEECCeEEEEEeeCCEEEEEEECCCCEEECCEEEECCcHH
Confidence 36778888889999999999999999887665 5788888899999999998754
No 138
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=98.62 E-value=4.9e-07 Score=86.69 Aligned_cols=38 Identities=34% Similarity=0.574 Sum_probs=34.0
Q ss_pred CcEEEECCChHHHHHHHHhhc-C--CcEEEEcCCCceeeec
Q 017664 17 KKVVVIGGGVGGSLLAYHIQS-F--ADVVLIDEKEYFEITW 54 (368)
Q Consensus 17 ~~vvIIGaG~aGl~aA~~L~~-g--~~v~lie~~~~~~~~~ 54 (368)
++|+|||||+|||+||+.|++ | ++|+|+|+++.+|+..
T Consensus 1 ~~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~GGr~ 41 (451)
T PRK11883 1 KKVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGGKI 41 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCcceE
Confidence 479999999999999999985 6 8999999999988654
No 139
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=98.62 E-value=1.6e-06 Score=81.51 Aligned_cols=54 Identities=15% Similarity=0.251 Sum_probs=44.9
Q ss_pred chhHHHHHHHHHcCCcEEEecceeeecccCCC--eEEcCCCcEEecCEEEEccCCCC
Q 017664 182 SRASQIALDWLTSKKVEVILNQSVTLNTISDG--LIETSSGETIDTDCHFMCTGKAM 236 (368)
Q Consensus 182 ~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~--~v~~~~g~~i~~d~vi~a~G~~p 236 (368)
..+.+.+.+.+++.|++++.++.|..++.+++ .+.+.+| ++.+|.+|+|+|...
T Consensus 149 ~~l~~aL~~~~~~~Gv~i~~~~~V~~i~~~~~~~~V~~~~g-~i~ad~vV~A~G~~s 204 (393)
T PRK11728 149 RAVAEAMAELIQARGGEIRLGAEVTALDEHANGVVVRTTQG-EYEARTLINCAGLMS 204 (393)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCEEEEEEecCCeEEEEECCC-EEEeCEEEECCCcch
Confidence 46777888889999999999999998876555 5667776 799999999999764
No 140
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=98.60 E-value=4.1e-07 Score=85.52 Aligned_cols=54 Identities=15% Similarity=0.092 Sum_probs=42.7
Q ss_pred hhHHHHHHHHHcC-CcEEEecceeeecccCCC--eEEcCCCcEEecCEEEEccCCCC
Q 017664 183 RASQIALDWLTSK-KVEVILNQSVTLNTISDG--LIETSSGETIDTDCHFMCTGKAM 236 (368)
Q Consensus 183 ~~~~~~~~~l~~~-gv~i~~~~~v~~i~~~~~--~v~~~~g~~i~~d~vi~a~G~~p 236 (368)
.+.+.+.+.+++. |++++.++++..++.+++ .+.+.+|+++.+|++|.|.|...
T Consensus 113 ~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S 169 (391)
T PRK08020 113 VLQLALWQALEAHPNVTLRCPASLQALQRDDDGWELTLADGEEIQAKLVIGADGANS 169 (391)
T ss_pred HHHHHHHHHHHcCCCcEEEcCCeeEEEEEcCCeEEEEECCCCEEEeCEEEEeCCCCc
Confidence 3445666666665 999999999998876554 56777888999999999999874
No 141
>PRK07233 hypothetical protein; Provisional
Probab=98.59 E-value=1.6e-07 Score=89.57 Aligned_cols=54 Identities=19% Similarity=0.134 Sum_probs=43.8
Q ss_pred chhHHHHHHHHHcCCcEEEecceeeecccCCC--eEEcCCCcEEecCEEEEccCCC
Q 017664 182 SRASQIALDWLTSKKVEVILNQSVTLNTISDG--LIETSSGETIDTDCHFMCTGKA 235 (368)
Q Consensus 182 ~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~--~v~~~~g~~i~~d~vi~a~G~~ 235 (368)
..+.+.+.+.+++.|++++++++|++|+.+++ .+...+++++++|.||+|++..
T Consensus 198 ~~l~~~l~~~l~~~g~~v~~~~~V~~i~~~~~~~~~~~~~~~~~~ad~vI~a~p~~ 253 (434)
T PRK07233 198 ATLIDALAEAIEARGGEIRLGTPVTSVVIDGGGVTGVEVDGEEEDFDAVISTAPPP 253 (434)
T ss_pred HHHHHHHHHHHHhcCceEEeCCCeeEEEEcCCceEEEEeCCceEECCEEEECCCHH
Confidence 35778888889999999999999999987655 3344667789999999998753
No 142
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=98.59 E-value=2.4e-07 Score=88.56 Aligned_cols=100 Identities=13% Similarity=0.196 Sum_probs=74.3
Q ss_pred CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccc------cccc-----Cc--hhHHHHHHHHHcCCcEEEecceee
Q 017664 140 NSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKL------LEFV-----GS--RASQIALDWLTSKKVEVILNQSVT 206 (368)
Q Consensus 140 ~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~------l~~~-----~~--~~~~~~~~~l~~~gv~i~~~~~v~ 206 (368)
++++|||+|+.|+.+|..|++..++.+|+++++++.+ ++.. ++ ++.....+.+++.|++++.++.|.
T Consensus 1 ~~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~ 80 (444)
T PRK09564 1 MKIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVSFGACGLPYFVGGFFDDPNTMIARTPEEFIKSGIDVKTEHEVV 80 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcceeecCCCceEeccccCCHHHhhcCCHHHHHHCCCeEEecCEEE
Confidence 3799999999999999999875456799999988753 1111 11 122233466788899999999999
Q ss_pred ecccCCCeEEcCC---CcEEe--cCEEEEccCCCCCch
Q 017664 207 LNTISDGLIETSS---GETID--TDCHFMCTGKAMASS 239 (368)
Q Consensus 207 ~i~~~~~~v~~~~---g~~i~--~d~vi~a~G~~p~~~ 239 (368)
.+..++..+.+.+ +++++ +|.+|+|||.+|..+
T Consensus 81 ~id~~~~~v~~~~~~~~~~~~~~yd~lviAtG~~~~~~ 118 (444)
T PRK09564 81 KVDAKNKTITVKNLKTGSIFNDTYDKLMIATGARPIIP 118 (444)
T ss_pred EEECCCCEEEEEECCCCCEEEecCCEEEECCCCCCCCC
Confidence 9887776555533 56666 999999999997643
No 143
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=98.59 E-value=1.6e-08 Score=99.39 Aligned_cols=41 Identities=22% Similarity=0.222 Sum_probs=35.5
Q ss_pred CCCCCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceee
Q 017664 12 GLVEKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEI 52 (368)
Q Consensus 12 ~~~~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~ 52 (368)
.....+||+|||+|++|+++|..+. +|.+|+|||+++.++.
T Consensus 8 ~~~~~~dvvvvG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg 49 (581)
T PRK06134 8 PPDLECDVLVIGSGAAGLSAAVTAAWHGLKVIVVEKDPVFGG 49 (581)
T ss_pred CCCCccCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCc
Confidence 3455789999999999999999987 5999999999887654
No 144
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.57 E-value=3e-08 Score=97.05 Aligned_cols=102 Identities=17% Similarity=0.104 Sum_probs=64.9
Q ss_pred CCeEEEEcCchhHHHHHHH-------HhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHcCCcEEEecceeeecccC
Q 017664 139 ANSVLIVGGGPTGVELAGE-------IAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVTLNTIS 211 (368)
Q Consensus 139 ~~~v~VvG~g~~~~e~a~~-------l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~ 211 (368)
++..+++|++..+++.+.. +.+ .+.+|++..............+...+.+.+++.|+++++++.+.++..+
T Consensus 160 p~~~~~~g~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~g~~~~~~L~~~~~~~gv~v~~~t~v~~l~~~ 237 (557)
T PRK07843 160 PLNMVVMQQDYVWLNLLKRHPRGVLRALK--VGARTLWAKATGKNLLGMGQALAAGLRIGLQRAGVPVLLNTPLTDLYVE 237 (557)
T ss_pred cccccccHHHHHHHHhhhcCchhHHHHHH--HHHHHHHHhccCCCcccCcHHHHHHHHHHHHcCCCEEEeCCEEEEEEEe
Confidence 5668899999988887753 111 1233333332222223345567788889999999999999999988766
Q ss_pred CC---eEEc-CCCc--EEecC-EEEEccC-CCCCchhhh
Q 017664 212 DG---LIET-SSGE--TIDTD-CHFMCTG-KAMASSWLR 242 (368)
Q Consensus 212 ~~---~v~~-~~g~--~i~~d-~vi~a~G-~~p~~~~~~ 242 (368)
++ .+.. .+++ .+.++ .||+||| +.+|.++++
T Consensus 238 ~g~v~Gv~~~~~g~~~~i~A~~~VIlAtGG~~~n~~m~~ 276 (557)
T PRK07843 238 DGRVTGVHAAESGEPQLIRARRGVILASGGFEHNEQMRA 276 (557)
T ss_pred CCEEEEEEEEeCCcEEEEEeceeEEEccCCcCcCHHHHH
Confidence 55 2322 2443 57785 6888666 555544433
No 145
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=98.57 E-value=2.6e-07 Score=86.04 Aligned_cols=98 Identities=12% Similarity=0.127 Sum_probs=75.2
Q ss_pred eEEEEcCchhHHHHHHHHhhh-CCCCeEEEEecCcccc--ccc---------CchhHHHHHHHHHcCCcEEEecceeeec
Q 017664 141 SVLIVGGGPTGVELAGEIAVD-FPDKKVILVHRGPKLL--EFV---------GSRASQIALDWLTSKKVEVILNQSVTLN 208 (368)
Q Consensus 141 ~v~VvG~g~~~~e~a~~l~~~-~~~~~v~~i~~~~~~l--~~~---------~~~~~~~~~~~l~~~gv~i~~~~~v~~i 208 (368)
+|+|||+|+.|+.+|..+.++ .++.+|+++++++.+. +.. ..++...+.+.+++.|++++.+ .|..+
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gv~~~~~-~v~~i 79 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTPYSGMLPGMIAGHYSLDEIRIDLRRLARQAGARFVIA-EATGI 79 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCCcccchhhHHHheeCCHHHhcccHHHHHHhcCCEEEEE-EEEEE
Confidence 589999999999999998643 3567999999887532 111 1123334556778889999875 78888
Q ss_pred ccCCCeEEcCCCcEEecCEEEEccCCCCCch
Q 017664 209 TISDGLIETSSGETIDTDCHFMCTGKAMASS 239 (368)
Q Consensus 209 ~~~~~~v~~~~g~~i~~d~vi~a~G~~p~~~ 239 (368)
..++..|.+.+|+++++|.+|+|||..|..+
T Consensus 80 d~~~~~V~~~~g~~~~yD~LviAtG~~~~~~ 110 (364)
T TIGR03169 80 DPDRRKVLLANRPPLSYDVLSLDVGSTTPLS 110 (364)
T ss_pred ecccCEEEECCCCcccccEEEEccCCCCCCC
Confidence 8777789999998999999999999987644
No 146
>PRK06184 hypothetical protein; Provisional
Probab=98.56 E-value=6.3e-07 Score=87.08 Aligned_cols=52 Identities=12% Similarity=0.037 Sum_probs=40.9
Q ss_pred hHHHHHHHHHcCCcEEEecceeeecccCCC--eEEc---CCCcEEecCEEEEccCCC
Q 017664 184 ASQIALDWLTSKKVEVILNQSVTLNTISDG--LIET---SSGETIDTDCHFMCTGKA 235 (368)
Q Consensus 184 ~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~--~v~~---~~g~~i~~d~vi~a~G~~ 235 (368)
+.+.+.+.+++.|++++.++++..++.+++ .+.+ .+++++++|++|.|.|..
T Consensus 111 le~~L~~~l~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~~~~~~i~a~~vVgADG~~ 167 (502)
T PRK06184 111 TERILRERLAELGHRVEFGCELVGFEQDADGVTARVAGPAGEETVRARYLVGADGGR 167 (502)
T ss_pred HHHHHHHHHHHCCCEEEeCcEEEEEEEcCCcEEEEEEeCCCeEEEEeCEEEECCCCc
Confidence 445667778888999999999999887655 3444 556789999999999965
No 147
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=98.56 E-value=1.1e-06 Score=82.23 Aligned_cols=53 Identities=19% Similarity=0.222 Sum_probs=43.0
Q ss_pred chhHHHHHHHHHcCCcEEEecceeeecccCCC--eEEcCCCcEEecCEEEEccCCC
Q 017664 182 SRASQIALDWLTSKKVEVILNQSVTLNTISDG--LIETSSGETIDTDCHFMCTGKA 235 (368)
Q Consensus 182 ~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~--~v~~~~g~~i~~d~vi~a~G~~ 235 (368)
..+...+.+.+.+.|++++.+++|+.++.+++ .+.+++| ++.+|.||+|+|..
T Consensus 149 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g-~~~a~~vV~A~G~~ 203 (376)
T PRK11259 149 ELAIKAHLRLAREAGAELLFNEPVTAIEADGDGVTVTTADG-TYEAKKLVVSAGAW 203 (376)
T ss_pred HHHHHHHHHHHHHCCCEEECCCEEEEEEeeCCeEEEEeCCC-EEEeeEEEEecCcc
Confidence 34556666777889999999999999887655 5777777 79999999999975
No 148
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=98.56 E-value=5.1e-07 Score=84.42 Aligned_cols=38 Identities=29% Similarity=0.492 Sum_probs=33.5
Q ss_pred CcEEEECCChHHHHHHHHhhc-C--CcEEEEcCCCceeeec
Q 017664 17 KKVVVIGGGVGGSLLAYHIQS-F--ADVVLIDEKEYFEITW 54 (368)
Q Consensus 17 ~~vvIIGaG~aGl~aA~~L~~-g--~~v~lie~~~~~~~~~ 54 (368)
++++|||||++||+||++|++ + .+++|+|+++..|+..
T Consensus 1 ~~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG~l 41 (444)
T COG1232 1 MKIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGLL 41 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCceE
Confidence 369999999999999999985 5 8999999999887543
No 149
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=98.56 E-value=5.5e-07 Score=87.27 Aligned_cols=55 Identities=13% Similarity=0.041 Sum_probs=44.2
Q ss_pred CchhHHHHHHHHHcCCcEEEecceeeecccCCC---eEEcCCC-----cEEecCEEEEccCCC
Q 017664 181 GSRASQIALDWLTSKKVEVILNQSVTLNTISDG---LIETSSG-----ETIDTDCHFMCTGKA 235 (368)
Q Consensus 181 ~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~---~v~~~~g-----~~i~~d~vi~a~G~~ 235 (368)
...+.+.+.+.+++.|++|+++++|++|..+++ .+.+.++ +++.+|.||+++...
T Consensus 231 ~~~l~~aL~~~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~~~~~~~~~~~ad~VI~~~~~~ 293 (492)
T TIGR02733 231 MQTLSDRLVEALKRDGGNLLTGQRVTAIHTKGGRAGWVVVVDSRKQEDLNVKADDVVANLPPQ 293 (492)
T ss_pred HHHHHHHHHHHHHhcCCEEeCCceEEEEEEeCCeEEEEEEecCCCCceEEEECCEEEECCCHH
Confidence 346888899999999999999999999987765 3555444 578999999997753
No 150
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=98.56 E-value=8.7e-07 Score=82.49 Aligned_cols=50 Identities=28% Similarity=0.424 Sum_probs=39.9
Q ss_pred hhHHHHHHHHHcC-CcEEEecceeeecccCCCeEEcCCCcEEecCEEEEccCCC
Q 017664 183 RASQIALDWLTSK-KVEVILNQSVTLNTISDGLIETSSGETIDTDCHFMCTGKA 235 (368)
Q Consensus 183 ~~~~~~~~~l~~~-gv~i~~~~~v~~i~~~~~~v~~~~g~~i~~d~vi~a~G~~ 235 (368)
.+...+.+.+++. |++++++++|..++.. .+.+.+|+ +.+|.||+|+|..
T Consensus 146 ~~~~~l~~~~~~~~Gv~i~~~t~V~~i~~~--~v~t~~g~-i~a~~VV~A~G~~ 196 (365)
T TIGR03364 146 EAIPALAAYLAEQHGVEFHWNTAVTSVETG--TVRTSRGD-VHADQVFVCPGAD 196 (365)
T ss_pred HHHHHHHHHHHhcCCCEEEeCCeEEEEecC--eEEeCCCc-EEeCEEEECCCCC
Confidence 4556677777665 9999999999988643 78888774 7899999999975
No 151
>PRK06834 hypothetical protein; Provisional
Probab=98.55 E-value=4.3e-07 Score=87.57 Aligned_cols=55 Identities=22% Similarity=0.303 Sum_probs=45.4
Q ss_pred hhHHHHHHHHHcCCcEEEecceeeecccCCC--eEEcCCCcEEecCEEEEccCCCCC
Q 017664 183 RASQIALDWLTSKKVEVILNQSVTLNTISDG--LIETSSGETIDTDCHFMCTGKAMA 237 (368)
Q Consensus 183 ~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~--~v~~~~g~~i~~d~vi~a~G~~p~ 237 (368)
.+.+.+.+.+++.|++++.+++++.++.+++ .+.+.+|+++.+|++|.|.|....
T Consensus 101 ~le~~L~~~l~~~gv~i~~~~~v~~v~~~~~~v~v~~~~g~~i~a~~vVgADG~~S~ 157 (488)
T PRK06834 101 HIERILAEWVGELGVPIYRGREVTGFAQDDTGVDVELSDGRTLRAQYLVGCDGGRSL 157 (488)
T ss_pred HHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCCC
Confidence 4566677888888999999999999887665 566677888999999999997653
No 152
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=98.55 E-value=6.2e-07 Score=86.27 Aligned_cols=49 Identities=16% Similarity=0.063 Sum_probs=37.4
Q ss_pred hhHHHHHHHHHcCCcEEEecceeeecccCCC--eEEcCCCcEEecCEEEEccC
Q 017664 183 RASQIALDWLTSKKVEVILNQSVTLNTISDG--LIETSSGETIDTDCHFMCTG 233 (368)
Q Consensus 183 ~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~--~v~~~~g~~i~~d~vi~a~G 233 (368)
.+.+.+.+.+++ .+++++++|+.|+.+++ .+.+.+|+++.+|.||+++.
T Consensus 227 ~l~~~l~~~l~~--~~i~~~~~V~~I~~~~~~~~v~~~~g~~~~ad~VI~a~p 277 (463)
T PRK12416 227 TIIDRLEEVLTE--TVVKKGAVTTAVSKQGDRYEISFANHESIQADYVVLAAP 277 (463)
T ss_pred HHHHHHHHhccc--ccEEcCCEEEEEEEcCCEEEEEECCCCEEEeCEEEECCC
Confidence 344555555543 57999999999987766 56677888899999999975
No 153
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=98.55 E-value=3.6e-07 Score=86.44 Aligned_cols=53 Identities=17% Similarity=0.204 Sum_probs=40.6
Q ss_pred hhHHHHHHHHHcCCcEEEecceeeecccCCC--eEEcCCC-----cEEecCEEEEccCCC
Q 017664 183 RASQIALDWLTSKKVEVILNQSVTLNTISDG--LIETSSG-----ETIDTDCHFMCTGKA 235 (368)
Q Consensus 183 ~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~--~v~~~~g-----~~i~~d~vi~a~G~~ 235 (368)
.+...+.+.+++.|++++++++|.+++.+++ .+.+.++ .++++|.||+|+|..
T Consensus 198 ~~~~~l~~~a~~~G~~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~~~i~a~~vV~a~G~~ 257 (410)
T PRK12409 198 KFTTGLAAACARLGVQFRYGQEVTSIKTDGGGVVLTVQPSAEHPSRTLEFDGVVVCAGVG 257 (410)
T ss_pred HHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCCCCccceEecCEEEECCCcC
Confidence 4556677888999999999999999876555 3333322 379999999999975
No 154
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.55 E-value=1.1e-06 Score=90.93 Aligned_cols=51 Identities=18% Similarity=0.193 Sum_probs=41.9
Q ss_pred CCcEEeCCCeeecCCCCeEEecccCCCCccchHHHHHHHHHHHHHHHHHHHcC
Q 017664 253 RGRLMVDENLRVRGFKNVFAIGDITDIPEIKQGYLAQKHALVTAKNLKKLMMG 305 (368)
Q Consensus 253 ~g~i~vd~~~~~~~~~~ifa~GD~~~~~~~~~~~~a~~~g~~aa~~i~~~l~g 305 (368)
.|.|.||.+.+| +.||+||+|||+..+ .+....+.-.|+.|+.++..++.+
T Consensus 361 ~GGi~vd~~~~T-~v~GLfAaGE~a~~~-~nsl~~a~v~G~~Ag~~a~~~~~~ 411 (897)
T PRK13800 361 ASGVWVDEHART-TVPGLYAAGDLACVP-HNYMIGAFVFGDLAGAHAAGTLAE 411 (897)
T ss_pred cceEEecCCCcc-cCCCeEechhccCcc-hhhhhhHHHhHHHHHHHHHHHHhc
Confidence 478999999999 799999999997653 245567889999999999877643
No 155
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=98.54 E-value=3.6e-07 Score=84.44 Aligned_cols=54 Identities=17% Similarity=0.200 Sum_probs=39.7
Q ss_pred hhHHHHHHHHHcCCcEEEecceeeecccCCC--e--EEcC-CC--cEEecCEEEEccCCCC
Q 017664 183 RASQIALDWLTSKKVEVILNQSVTLNTISDG--L--IETS-SG--ETIDTDCHFMCTGKAM 236 (368)
Q Consensus 183 ~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~--~--v~~~-~g--~~i~~d~vi~a~G~~p 236 (368)
.+.+.+.+.+++.|++++.++++..++.+++ . +... +| +++++|+||-|-|...
T Consensus 112 ~l~~~L~~~~~~~gv~i~~~~~v~~~~~d~~~~~~~~~~~~~g~~~~i~adlvVgADG~~S 172 (356)
T PF01494_consen 112 ELDRALREEAEERGVDIRFGTRVVSIEQDDDGVTVVVRDGEDGEEETIEADLVVGADGAHS 172 (356)
T ss_dssp HHHHHHHHHHHHHTEEEEESEEEEEEEEETTEEEEEEEETCTCEEEEEEESEEEE-SGTT-
T ss_pred HHHHhhhhhhhhhhhhheeeeecccccccccccccccccccCCceeEEEEeeeecccCccc
Confidence 4567788888888999999999998876655 2 2222 34 3789999999999874
No 156
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=98.54 E-value=4.8e-07 Score=84.98 Aligned_cols=99 Identities=22% Similarity=0.220 Sum_probs=60.6
Q ss_pred cEEEECCChHHHHHHHHhhc-CCcEEEEcCCCceeeec--cc----e-----eee-----------ecccccc----cc-
Q 017664 18 KVVVIGGGVGGSLLAYHIQS-FADVVLIDEKEYFEITW--AS----L-----RAV-----------VEPSFAV----RS- 69 (368)
Q Consensus 18 ~vvIIGaG~aGl~aA~~L~~-g~~v~lie~~~~~~~~~--~~----~-----~~~-----------~~~~~~~----~~- 69 (368)
||+||||||||+++|+.|++ |.+|+|||+++..+.+. .. + ... ..+.... ..
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPGNHTYGVWDDDLSDLGLADCVEHVWPDVYEYRFPKQPRKLGTAYG 80 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCCCccccccHhhhhhhchhhHHhhcCCCceEEecCCcchhcCCcee
Confidence 79999999999999999874 99999999987654321 10 0 000 0000000 00
Q ss_pred eeecccc---------cCceeEEEeEEEEeecc-----EEEecCCeEEEecEEEEecCCCC
Q 017664 70 VINHGDY---------LSNVKIVVSTAVSITDT-----EVVTAGGQTFVYDYVVVATGHVE 116 (368)
Q Consensus 70 ~~~~~~~---------~~~~~~~~~~~~~~~~~-----~v~~~~g~~~~~d~lvlAtG~~~ 116 (368)
......+ ..++.+....+..+... .+.+.++..++++.||.|+|..+
T Consensus 81 ~i~~~~l~~~l~~~~~~~gv~~~~~~v~~i~~~~~~~~~v~~~~g~~~~a~~VI~A~G~~s 141 (388)
T TIGR01790 81 SVDSTRLHEELLQKCPEGGVLWLERKAIHAEADGVALSTVYCAGGQRIQARLVIDARGFGP 141 (388)
T ss_pred EEcHHHHHHHHHHHHHhcCcEEEccEEEEEEecCCceeEEEeCCCCEEEeCEEEECCCCch
Confidence 0000000 01456666666665432 45666777899999999999876
No 157
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.53 E-value=3.4e-07 Score=86.02 Aligned_cols=36 Identities=31% Similarity=0.397 Sum_probs=32.2
Q ss_pred CCCCcEEEECCChHHHHHHHHhhc-CCcEEEEcCCCc
Q 017664 14 VEKKKVVVIGGGVGGSLLAYHIQS-FADVVLIDEKEY 49 (368)
Q Consensus 14 ~~~~~vvIIGaG~aGl~aA~~L~~-g~~v~lie~~~~ 49 (368)
++.+||+||||||+|+++|..|++ |.+|+|+|+.+.
T Consensus 5 ~~~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~ 41 (388)
T PRK07494 5 KEHTDIAVIGGGPAGLAAAIALARAGASVALVAPEPP 41 (388)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCC
Confidence 446899999999999999999985 999999999864
No 158
>PRK07190 hypothetical protein; Provisional
Probab=98.51 E-value=9.3e-07 Score=85.15 Aligned_cols=52 Identities=23% Similarity=0.220 Sum_probs=42.2
Q ss_pred hHHHHHHHHHcCCcEEEecceeeecccCCC--eEEcCCCcEEecCEEEEccCCC
Q 017664 184 ASQIALDWLTSKKVEVILNQSVTLNTISDG--LIETSSGETIDTDCHFMCTGKA 235 (368)
Q Consensus 184 ~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~--~v~~~~g~~i~~d~vi~a~G~~ 235 (368)
+...+.+.+++.|++++.+++++.++.+++ .+.+.+|+++.++++|.|.|..
T Consensus 111 le~~L~~~~~~~Gv~v~~~~~v~~l~~~~~~v~v~~~~g~~v~a~~vVgADG~~ 164 (487)
T PRK07190 111 VEKLLDDKLKEAGAAVKRNTSVVNIELNQAGCLTTLSNGERIQSRYVIGADGSR 164 (487)
T ss_pred HHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeeEEEECCCcEEEeCEEEECCCCC
Confidence 445566777888999999999999887655 4566778889999999999964
No 159
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=98.50 E-value=3.8e-07 Score=85.03 Aligned_cols=100 Identities=29% Similarity=0.355 Sum_probs=63.0
Q ss_pred cEEEECCChHHHHHHHHh--h-cCCcEEEEcCCCceeee----cccee-------eee----------ccccc----c-c
Q 017664 18 KVVVIGGGVGGSLLAYHI--Q-SFADVVLIDEKEYFEIT----WASLR-------AVV----------EPSFA----V-R 68 (368)
Q Consensus 18 ~vvIIGaG~aGl~aA~~L--~-~g~~v~lie~~~~~~~~----~~~~~-------~~~----------~~~~~----~-~ 68 (368)
|||||||||||+++|.+| + +|.+|+|||+++..+++ |.... ..+ .+... . .
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~~~~~~~tW~~~~~~~~~~~~~v~~~w~~~~v~~~~~~~~~~~~~ 80 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKPPWPNDRTWCFWEKDLGPLDSLVSHRWSGWRVYFPDGSRILIDYP 80 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccccccCCcccccccccccchHHHHheecCceEEEeCCCceEEcccc
Confidence 899999999999999999 4 49999999998765211 11100 000 00000 0 0
Q ss_pred c-eeecccc---------cCceeEEEeEEEEeecc----EEEecCCeEEEecEEEEecCCCCC
Q 017664 69 S-VINHGDY---------LSNVKIVVSTAVSITDT----EVVTAGGQTFVYDYVVVATGHVES 117 (368)
Q Consensus 69 ~-~~~~~~~---------~~~~~~~~~~~~~~~~~----~v~~~~g~~~~~d~lvlAtG~~~~ 117 (368)
+ ......+ ..++.++...+..++.. .+.+.+|..++++.||-|.|..+.
T Consensus 81 Y~~i~~~~f~~~l~~~~~~~~~~~~~~~V~~i~~~~~~~~v~~~~g~~i~a~~VvDa~g~~~~ 143 (374)
T PF05834_consen 81 YCMIDRADFYEFLLERAAAGGVIRLNARVTSIEETGDGVLVVLADGRTIRARVVVDARGPSSP 143 (374)
T ss_pred eEEEEHHHHHHHHHHHhhhCCeEEEccEEEEEEecCceEEEEECCCCEEEeeEEEECCCcccc
Confidence 0 0011111 12455677778877654 467889999999999999996643
No 160
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=98.50 E-value=2.8e-06 Score=81.77 Aligned_cols=64 Identities=20% Similarity=0.326 Sum_probs=45.6
Q ss_pred chhHHHHHHHHHcCC-cEEEecceeeecccC-CC--eEEc---CCCc--EEecCEEEEccCCCCCchhhhcccc
Q 017664 182 SRASQIALDWLTSKK-VEVILNQSVTLNTIS-DG--LIET---SSGE--TIDTDCHFMCTGKAMASSWLRETIL 246 (368)
Q Consensus 182 ~~~~~~~~~~l~~~g-v~i~~~~~v~~i~~~-~~--~v~~---~~g~--~i~~d~vi~a~G~~p~~~~~~~~~l 246 (368)
..+.+.+.+.+++.| ++++++++|+.++.+ ++ .+.+ .+|+ ++.++.||+|+|.. ...+++..+.
T Consensus 183 ~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~dg~~~v~~~~~~~G~~~~i~A~~VVvaAGg~-s~~L~~~~Gi 255 (494)
T PRK05257 183 GALTRQLVGYLQKQGNFELQLGHEVRDIKRNDDGSWTVTVKDLKTGEKRTVRAKFVFIGAGGG-ALPLLQKSGI 255 (494)
T ss_pred HHHHHHHHHHHHhCCCeEEEeCCEEEEEEECCCCCEEEEEEEcCCCceEEEEcCEEEECCCcc-hHHHHHHcCC
Confidence 356777788888876 899999999998764 33 3443 3453 69999999999976 3445544443
No 161
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.49 E-value=5.3e-07 Score=84.54 Aligned_cols=33 Identities=30% Similarity=0.455 Sum_probs=30.4
Q ss_pred CCcEEEECCChHHHHHHHHhhc-CCcEEEEcCCC
Q 017664 16 KKKVVVIGGGVGGSLLAYHIQS-FADVVLIDEKE 48 (368)
Q Consensus 16 ~~~vvIIGaG~aGl~aA~~L~~-g~~v~lie~~~ 48 (368)
.+||+||||||+|+++|..|++ |++|+|+|+.+
T Consensus 3 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~ 36 (384)
T PRK08849 3 KYDIAVVGGGMVGAATALGFAKQGRSVAVIEGGE 36 (384)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCC
Confidence 5799999999999999999985 99999999874
No 162
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=98.48 E-value=1.6e-07 Score=64.34 Aligned_cols=36 Identities=22% Similarity=0.332 Sum_probs=30.8
Q ss_pred EECCChHHHHHHHHhhc-CCcEEEEcCCCceeeeccc
Q 017664 21 VIGGGVGGSLLAYHIQS-FADVVLIDEKEYFEITWAS 56 (368)
Q Consensus 21 IIGaG~aGl~aA~~L~~-g~~v~lie~~~~~~~~~~~ 56 (368)
|||||++||++|+.|++ |.+|+|+|+++..|+....
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~GG~~~~ 37 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLGGRARS 37 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSSSSGGGCE
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcccCcceeE
Confidence 89999999999999985 9999999999998855443
No 163
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=98.47 E-value=1.1e-06 Score=82.31 Aligned_cols=98 Identities=14% Similarity=0.157 Sum_probs=73.4
Q ss_pred CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccc---cccC---------chhHH-HHHHHHHcCCcEEEecceee
Q 017664 140 NSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLL---EFVG---------SRASQ-IALDWLTSKKVEVILNQSVT 206 (368)
Q Consensus 140 ~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l---~~~~---------~~~~~-~~~~~l~~~gv~i~~~~~v~ 206 (368)
++++|||+|+.|+.+|..|++..+..+|+++.+.+... +.+. .++.. ...+.+++.|++++.++.|.
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~ 82 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSGDEYNKPDLSHVFSQGQRADDLTRQSAGEFAEQFNLRLFPHTWVT 82 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCCCCcCcCcCcHHHhCCCCHHHhhcCCHHHHHHhCCCEEECCCEEE
Confidence 58999999999999999998766778999998876421 1110 01111 13345678899999999999
Q ss_pred ecccCCCeEEcCCCcEEecCEEEEccCCCCCc
Q 017664 207 LNTISDGLIETSSGETIDTDCHFMCTGKAMAS 238 (368)
Q Consensus 207 ~i~~~~~~v~~~~g~~i~~d~vi~a~G~~p~~ 238 (368)
.+..++..+.+ +++++++|.+|+|||..|..
T Consensus 83 ~id~~~~~v~~-~~~~~~yd~LVlATG~~~~~ 113 (377)
T PRK04965 83 DIDAEAQVVKS-QGNQWQYDKLVLATGASAFV 113 (377)
T ss_pred EEECCCCEEEE-CCeEEeCCEEEECCCCCCCC
Confidence 88876656665 56689999999999988754
No 164
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=98.47 E-value=1.1e-06 Score=83.90 Aligned_cols=99 Identities=14% Similarity=0.172 Sum_probs=71.9
Q ss_pred CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccc------cccCch---hHHHH-----HHHHHcCCcEEEeccee
Q 017664 140 NSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLL------EFVGSR---ASQIA-----LDWLTSKKVEVILNQSV 205 (368)
Q Consensus 140 ~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l------~~~~~~---~~~~~-----~~~l~~~gv~i~~~~~v 205 (368)
++|+|||+|+.|+.+|..|++..++.+|+++++++.+. +..-.. ..+.. .+..++.|++++.+++|
T Consensus 2 ~~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~V 81 (438)
T PRK13512 2 PKIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSFANCALPYYIGEVVEDRKYALAYTPEKFYDRKQITVKTYHEV 81 (438)
T ss_pred CeEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCcccccCCcchhhcCccCCHHHcccCCHHHHHHhCCCEEEeCCEE
Confidence 47999999999999999998766678999999986532 111000 01111 23336679999999999
Q ss_pred eecccCCCeEEcCCC---c--EEecCEEEEccCCCCCc
Q 017664 206 TLNTISDGLIETSSG---E--TIDTDCHFMCTGKAMAS 238 (368)
Q Consensus 206 ~~i~~~~~~v~~~~g---~--~i~~d~vi~a~G~~p~~ 238 (368)
..|..++..|.+.++ + ++++|.+|+|||.+|..
T Consensus 82 ~~Id~~~~~v~~~~~~~~~~~~~~yd~lviAtGs~~~~ 119 (438)
T PRK13512 82 IAINDERQTVTVLNRKTNEQFEESYDKLILSPGASANS 119 (438)
T ss_pred EEEECCCCEEEEEECCCCcEEeeecCEEEECCCCCCCC
Confidence 999888776665432 2 46899999999999864
No 165
>PRK07588 hypothetical protein; Provisional
Probab=98.47 E-value=2.4e-06 Score=80.33 Aligned_cols=52 Identities=15% Similarity=0.126 Sum_probs=40.6
Q ss_pred hHHHHHHHHHcCCcEEEecceeeecccCCC--eEEcCCCcEEecCEEEEccCCCC
Q 017664 184 ASQIALDWLTSKKVEVILNQSVTLNTISDG--LIETSSGETIDTDCHFMCTGKAM 236 (368)
Q Consensus 184 ~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~--~v~~~~g~~i~~d~vi~a~G~~p 236 (368)
+...+.+.+. .++++++++++..++.+++ .+.+.+|+++++|+||-|-|...
T Consensus 105 l~~~L~~~~~-~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~d~vIgADG~~S 158 (391)
T PRK07588 105 LAAAIYTAID-GQVETIFDDSIATIDEHRDGVRVTFERGTPRDFDLVIGADGLHS 158 (391)
T ss_pred HHHHHHHhhh-cCeEEEeCCEEeEEEECCCeEEEEECCCCEEEeCEEEECCCCCc
Confidence 3344444444 4799999999999987665 57788999999999999999754
No 166
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.47 E-value=8.4e-07 Score=84.11 Aligned_cols=37 Identities=24% Similarity=0.354 Sum_probs=33.1
Q ss_pred CCCCCcEEEECCChHHHHHHHHhhc-CCcEEEEcCCCc
Q 017664 13 LVEKKKVVVIGGGVGGSLLAYHIQS-FADVVLIDEKEY 49 (368)
Q Consensus 13 ~~~~~~vvIIGaG~aGl~aA~~L~~-g~~v~lie~~~~ 49 (368)
+...+||+||||||||+++|..|++ |++|+|+|+.+.
T Consensus 15 ~~~~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 52 (415)
T PRK07364 15 RSLTYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPA 52 (415)
T ss_pred CccccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCc
Confidence 4457899999999999999999985 999999999865
No 167
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=98.46 E-value=4.1e-06 Score=80.40 Aligned_cols=53 Identities=13% Similarity=0.012 Sum_probs=43.0
Q ss_pred chhHHHHHHHHHcCCcEEEecceeeecccCCC-eEEcCCCcEEecCEEEEccCCC
Q 017664 182 SRASQIALDWLTSKKVEVILNQSVTLNTISDG-LIETSSGETIDTDCHFMCTGKA 235 (368)
Q Consensus 182 ~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~-~v~~~~g~~i~~d~vi~a~G~~ 235 (368)
..+...+.+.+++.|++++.++.|..++..+. .+.+++| ++.+|.||+|+|.-
T Consensus 183 ~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~~~~~~v~t~~g-~v~A~~VV~Atga~ 236 (460)
T TIGR03329 183 GLLVRGLRRVALELGVEIHENTPMTGLEEGQPAVVRTPDG-QVTADKVVLALNAW 236 (460)
T ss_pred HHHHHHHHHHHHHcCCEEECCCeEEEEeeCCceEEEeCCc-EEECCEEEEccccc
Confidence 35667788889999999999999998875333 5777777 69999999999843
No 168
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=98.46 E-value=1.9e-06 Score=79.18 Aligned_cols=46 Identities=20% Similarity=0.359 Sum_probs=40.9
Q ss_pred CCCCcEEEECCChHHHHHHHHhhc-CCcEEEEcCCCceeeeccceee
Q 017664 14 VEKKKVVVIGGGVGGSLLAYHIQS-FADVVLIDEKEYFEITWASLRA 59 (368)
Q Consensus 14 ~~~~~vvIIGaG~aGl~aA~~L~~-g~~v~lie~~~~~~~~~~~~~~ 59 (368)
++..||||||+|.+||++|+.|++ |++|+|+|.++++|+.....+.
T Consensus 5 ~~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r~GGR~~t~r~ 51 (450)
T COG1231 5 PKTADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRVGGRSLTARA 51 (450)
T ss_pred CCCCcEEEECCchHHHHHHHHHhhcCcEEEEEeccCCcCceeEEEec
Confidence 567899999999999999999986 9999999999999987665554
No 169
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=98.45 E-value=3e-06 Score=74.23 Aligned_cols=124 Identities=19% Similarity=0.166 Sum_probs=79.6
Q ss_pred cCchhHHHHHHHHHcCCcEEEecceeeecccCCC---eEEcCCCc--EEecCEEEEccCCCCCchh------hhccc--c
Q 017664 180 VGSRASQIALDWLTSKKVEVILNQSVTLNTISDG---LIETSSGE--TIDTDCHFMCTGKAMASSW------LRETI--L 246 (368)
Q Consensus 180 ~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~---~v~~~~g~--~i~~d~vi~a~G~~p~~~~------~~~~~--l 246 (368)
...++.+.+.+.++..|.-+.++.+|...+..++ .+.+.++. .+.+|..++|+|.--..-+ +.+.- +
T Consensus 256 lGiRl~~~L~~~f~~~Gg~~m~Gd~V~~a~~~~~~v~~i~trn~~diP~~a~~~VLAsGsffskGLvae~d~I~EPIf~l 335 (421)
T COG3075 256 LGIRLHNQLQRQFEQLGGLWMPGDEVKKATCKGGRVTEIYTRNHADIPLRADFYVLASGSFFSKGLVAERDKIYEPIFDL 335 (421)
T ss_pred hhhhHHHHHHHHHHHcCceEecCCceeeeeeeCCeEEEEEecccccCCCChhHeeeeccccccccchhhhhhhhcchhhc
Confidence 3446678888999999999999999988877766 45566765 4559999999996422211 11111 1
Q ss_pred ccccCC-----------------CCcEEeCCCeeecC----CCCeEEecccCCCCccch----HHHHHHHHHHHHHHHHH
Q 017664 247 KDSLDG-----------------RGRLMVDENLRVRG----FKNVFAIGDITDIPEIKQ----GYLAQKHALVTAKNLKK 301 (368)
Q Consensus 247 ~~~~~~-----------------~g~i~vd~~~~~~~----~~~ifa~GD~~~~~~~~~----~~~a~~~g~~aa~~i~~ 301 (368)
++.-++ .=.+.+|+++|... ..|+|+||.+.+...+.. +-.|...|..||+.|+.
T Consensus 336 di~~~~dR~~W~~~~ffapqp~~qfGV~tD~~lrp~~~g~~~eNL~aiGavlgGfdpi~egcGsGVaivta~~aa~qi~~ 415 (421)
T COG3075 336 DILQTADRAEWYHSDFFAPQPYQQFGVTTDDTLRPSRGGQTIENLYAIGAVLGGFDPIAEGCGSGVAIVTALHAAEQIAE 415 (421)
T ss_pred ccccCcchhhhhhccccCCChhHHhCcccccccCccccchHHHHHHHHHHHhcCCcHHHhcCCcchHHHHHHHHHHHHHH
Confidence 110010 01255666666532 579999999998765421 12567777778888876
Q ss_pred HH
Q 017664 302 LM 303 (368)
Q Consensus 302 ~l 303 (368)
..
T Consensus 416 ~~ 417 (421)
T COG3075 416 RA 417 (421)
T ss_pred Hh
Confidence 54
No 170
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=98.45 E-value=2.8e-06 Score=79.59 Aligned_cols=54 Identities=11% Similarity=0.060 Sum_probs=44.4
Q ss_pred hhHHHHHHHHHcCC-cEEEecceeeecccCCC--eEEcCCCcEEecCEEEEccCCCC
Q 017664 183 RASQIALDWLTSKK-VEVILNQSVTLNTISDG--LIETSSGETIDTDCHFMCTGKAM 236 (368)
Q Consensus 183 ~~~~~~~~~l~~~g-v~i~~~~~v~~i~~~~~--~v~~~~g~~i~~d~vi~a~G~~p 236 (368)
.+.+.+.+.+++.| ++++.+++|+.++.+++ .+.+.+|+++++|.+|.|.|...
T Consensus 107 ~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~~~~vi~adG~~S 163 (385)
T TIGR01988 107 VLQQALWERLQEYPNVTLLCPARVVELPRHSDHVELTLDDGQQLRARLLVGADGANS 163 (385)
T ss_pred HHHHHHHHHHHhCCCcEEecCCeEEEEEecCCeeEEEECCCCEEEeeEEEEeCCCCC
Confidence 45666777777777 99999999998876655 56778898999999999999764
No 171
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=98.45 E-value=9.5e-07 Score=90.07 Aligned_cols=100 Identities=15% Similarity=0.256 Sum_probs=76.7
Q ss_pred CeEEEEcCchhHHHHHHHHhhhC--CCCeEEEEecCcccc------c-ccCc----hhHHHHHHHHHcCCcEEEecceee
Q 017664 140 NSVLIVGGGPTGVELAGEIAVDF--PDKKVILVHRGPKLL------E-FVGS----RASQIALDWLTSKKVEVILNQSVT 206 (368)
Q Consensus 140 ~~v~VvG~g~~~~e~a~~l~~~~--~~~~v~~i~~~~~~l------~-~~~~----~~~~~~~~~l~~~gv~i~~~~~v~ 206 (368)
++++|||+|+.|+.+|..|.++. .+.+|+++.+.+++. + .+.. ++.....+++++.||+++.++.|.
T Consensus 4 ~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~Y~r~~L~~~~~~~~~~~l~~~~~~~~~~~gI~~~~g~~V~ 83 (847)
T PRK14989 4 VRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIAYDRVHLSSYFSHHTAEELSLVREGFYEKHGIKVLVGERAI 83 (847)
T ss_pred CcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCcccCCcchHhHcCCCHHHccCCCHHHHHhCCCEEEcCCEEE
Confidence 58999999999999999997642 356899999887642 1 1111 112223456788999999999998
Q ss_pred ecccCCCeEEcCCCcEEecCEEEEccCCCCCch
Q 017664 207 LNTISDGLIETSSGETIDTDCHFMCTGKAMASS 239 (368)
Q Consensus 207 ~i~~~~~~v~~~~g~~i~~d~vi~a~G~~p~~~ 239 (368)
.+..+...|.+.+|+++++|.+|+|||..|..+
T Consensus 84 ~Id~~~~~V~~~~G~~i~yD~LVIATGs~p~~p 116 (847)
T PRK14989 84 TINRQEKVIHSSAGRTVFYDKLIMATGSYPWIP 116 (847)
T ss_pred EEeCCCcEEEECCCcEEECCEEEECCCCCcCCC
Confidence 887766678888998999999999999987643
No 172
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=98.44 E-value=2.7e-06 Score=81.75 Aligned_cols=63 Identities=17% Similarity=0.268 Sum_probs=45.8
Q ss_pred chhHHHHHHHHHcCCcEEEecceeeecccCC-C--eEE---cCCC--cEEecCEEEEccCCCCCchhhhccc
Q 017664 182 SRASQIALDWLTSKKVEVILNQSVTLNTISD-G--LIE---TSSG--ETIDTDCHFMCTGKAMASSWLRETI 245 (368)
Q Consensus 182 ~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~-~--~v~---~~~g--~~i~~d~vi~a~G~~p~~~~~~~~~ 245 (368)
..+...+.+.+++.|++++++++|+.++.++ + .+. +.+| .++++|.||+|+|... ..+....+
T Consensus 178 ~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~~~~v~v~~~~~~~g~~~~i~A~~VV~AAG~~s-~~La~~~G 248 (483)
T TIGR01320 178 GALTKQLLGYLVQNGTTIRFGHEVRNLKRQSDGSWTVTVKNTRTGGKRTLNTRFVFVGAGGGA-LPLLQKSG 248 (483)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCeEEEEEeeccCCceEEEECCEEEECCCcch-HHHHHHcC
Confidence 4677888888889999999999999987643 3 333 2334 3689999999999763 34444443
No 173
>PRK06175 L-aspartate oxidase; Provisional
Probab=98.44 E-value=7.7e-07 Score=84.50 Aligned_cols=38 Identities=18% Similarity=0.354 Sum_probs=33.9
Q ss_pred CCCCcEEEECCChHHHHHHHHhhcCCcEEEEcCCCcee
Q 017664 14 VEKKKVVVIGGGVGGSLLAYHIQSFADVVLIDEKEYFE 51 (368)
Q Consensus 14 ~~~~~vvIIGaG~aGl~aA~~L~~g~~v~lie~~~~~~ 51 (368)
...+||||||+|.|||+||..+++|.+|+||||.+..+
T Consensus 2 ~~~~DVvVVG~G~AGl~AA~~a~~G~~V~lleK~~~~g 39 (433)
T PRK06175 2 NLYADVLIVGSGVAGLYSALNLRKDLKILMVSKGKLNE 39 (433)
T ss_pred CccccEEEECchHHHHHHHHHhccCCCEEEEecCCCCC
Confidence 35689999999999999999988899999999988654
No 174
>PLN02697 lycopene epsilon cyclase
Probab=98.44 E-value=5.8e-07 Score=86.70 Aligned_cols=102 Identities=22% Similarity=0.217 Sum_probs=62.5
Q ss_pred CCCcEEEECCChHHHHHHHHhhc-CCcEEEEcCCCceeeeccc----e-----e-----------eeeccc----ccccc
Q 017664 15 EKKKVVVIGGGVGGSLLAYHIQS-FADVVLIDEKEYFEITWAS----L-----R-----------AVVEPS----FAVRS 69 (368)
Q Consensus 15 ~~~~vvIIGaG~aGl~aA~~L~~-g~~v~lie~~~~~~~~~~~----~-----~-----------~~~~~~----~~~~~ 69 (368)
..+||+||||||||+++|..|++ |++|+|+|+...+..++.. + . ...... ....+
T Consensus 107 ~~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p~~~n~GvW~~~l~~lgl~~~i~~~w~~~~v~~~~~~~~~~~~~Y 186 (529)
T PLN02697 107 GTLDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFKDLGLEDCIEHVWRDTIVYLDDDKPIMIGRAY 186 (529)
T ss_pred CcccEEEECcCHHHHHHHHHHHhCCCcEEEecCcccCCCccccchhHHHhcCcHHHHHhhcCCcEEEecCCceeeccCcc
Confidence 35899999999999999999974 9999999986443221100 0 0 000000 00000
Q ss_pred e-eeccc---------ccCceeEEEeEEEEeec--c--E-EEecCCeEEEecEEEEecCCCC
Q 017664 70 V-INHGD---------YLSNVKIVVSTAVSITD--T--E-VVTAGGQTFVYDYVVVATGHVE 116 (368)
Q Consensus 70 ~-~~~~~---------~~~~~~~~~~~~~~~~~--~--~-v~~~~g~~~~~d~lvlAtG~~~ 116 (368)
. ..... ...++++....+..+.. . . +.+.++..+.++.||.|+|...
T Consensus 187 g~V~R~~L~~~Ll~~a~~~GV~~~~~~V~~I~~~~~~~~vv~~~dG~~i~A~lVI~AdG~~S 248 (529)
T PLN02697 187 GRVSRTLLHEELLRRCVESGVSYLSSKVDRITEASDGLRLVACEDGRVIPCRLATVASGAAS 248 (529)
T ss_pred cEEcHHHHHHHHHHHHHhcCCEEEeeEEEEEEEcCCcEEEEEEcCCcEEECCEEEECCCcCh
Confidence 0 00000 01256777777777753 2 2 3556788899999999999875
No 175
>PRK09126 hypothetical protein; Provisional
Probab=98.43 E-value=8.3e-07 Score=83.48 Aligned_cols=34 Identities=29% Similarity=0.450 Sum_probs=31.4
Q ss_pred CCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCc
Q 017664 16 KKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEY 49 (368)
Q Consensus 16 ~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~ 49 (368)
++||+||||||+|+++|..|+ +|++|+|+|+.+.
T Consensus 3 ~~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~ 37 (392)
T PRK09126 3 HSDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPL 37 (392)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCc
Confidence 689999999999999999998 4999999999864
No 176
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=98.43 E-value=3.7e-06 Score=80.47 Aligned_cols=63 Identities=19% Similarity=0.214 Sum_probs=44.7
Q ss_pred hhHHHHHHHHH-cCCcEEEecceeeecccC-CC--eEE---cCCCc--EEecCEEEEccCCCCCchhhhcccc
Q 017664 183 RASQIALDWLT-SKKVEVILNQSVTLNTIS-DG--LIE---TSSGE--TIDTDCHFMCTGKAMASSWLRETIL 246 (368)
Q Consensus 183 ~~~~~~~~~l~-~~gv~i~~~~~v~~i~~~-~~--~v~---~~~g~--~i~~d~vi~a~G~~p~~~~~~~~~l 246 (368)
.+.+.+.+.+. ..|+++++++.|..++.+ ++ .+. +.+++ ++++|.||+|+|... ..+++..+.
T Consensus 185 ~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~d~~w~v~v~~t~~g~~~~i~Ad~VV~AAGawS-~~La~~~Gi 256 (497)
T PRK13339 185 ALTRKLAKHLESHPNAQVKYNHEVVDLERLSDGGWEVTVKDRNTGEKREQVADYVFIGAGGGA-IPLLQKSGI 256 (497)
T ss_pred HHHHHHHHHHHhCCCcEEEeCCEEEEEEECCCCCEEEEEEecCCCceEEEEcCEEEECCCcch-HHHHHHcCC
Confidence 55667777775 459999999999988755 43 343 34453 689999999999873 445555543
No 177
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=98.43 E-value=5.9e-06 Score=80.88 Aligned_cols=54 Identities=11% Similarity=0.029 Sum_probs=41.3
Q ss_pred chhHHHHHHHHHcCCcEEEecceeeecccCCC---eEEc---CCC--cEEecCEEEEccCCC
Q 017664 182 SRASQIALDWLTSKKVEVILNQSVTLNTISDG---LIET---SSG--ETIDTDCHFMCTGKA 235 (368)
Q Consensus 182 ~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~---~v~~---~~g--~~i~~d~vi~a~G~~ 235 (368)
..+...+...++++|++++++++|+.+..+++ .+++ .++ .++.+|.||.|+|..
T Consensus 149 ~rl~~al~~~A~~~Ga~i~~~t~V~~i~~~~~~v~gv~v~d~~~g~~~~i~A~~VVnAaG~w 210 (546)
T PRK11101 149 FRLTAANMLDAKEHGAQILTYHEVTGLIREGDTVCGVRVRDHLTGETQEIHAPVVVNAAGIW 210 (546)
T ss_pred HHHHHHHHHHHHhCCCEEEeccEEEEEEEcCCeEEEEEEEEcCCCcEEEEECCEEEECCChh
Confidence 35566667778899999999999999876655 3443 223 379999999999965
No 178
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=98.42 E-value=1e-06 Score=84.75 Aligned_cols=53 Identities=19% Similarity=0.221 Sum_probs=40.8
Q ss_pred chhHHHHHHHHHcCCcEEEecceeeecccCCC---eEEc--CCC--cEEecCEEEEccCC
Q 017664 182 SRASQIALDWLTSKKVEVILNQSVTLNTISDG---LIET--SSG--ETIDTDCHFMCTGK 234 (368)
Q Consensus 182 ~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~---~v~~--~~g--~~i~~d~vi~a~G~ 234 (368)
..+...+.+.+++.|++++++++++++..+++ .+.. .++ ..+.++.||+|+|-
T Consensus 131 ~~l~~~l~~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~~~g~~~~i~a~~VIlAtGg 190 (466)
T PRK08274 131 KALVNALYRSAERLGVEIRYDAPVTALELDDGRFVGARAGSAAGGAERIRAKAVVLAAGG 190 (466)
T ss_pred HHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCeEEEEEEEccCCceEEEECCEEEECCCC
Confidence 35677788888999999999999998876555 3333 333 36889999999984
No 179
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=98.42 E-value=9.4e-07 Score=83.50 Aligned_cols=35 Identities=26% Similarity=0.489 Sum_probs=31.5
Q ss_pred CCCCCcEEEECCChHHHHHHHHhhc-CCcEEEEcCC
Q 017664 13 LVEKKKVVVIGGGVGGSLLAYHIQS-FADVVLIDEK 47 (368)
Q Consensus 13 ~~~~~~vvIIGaG~aGl~aA~~L~~-g~~v~lie~~ 47 (368)
|+..+||+||||||+|+++|..|++ |++|+|+|+.
T Consensus 1 ~m~~~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~ 36 (405)
T PRK08850 1 MMQSVDVAIIGGGMVGLALAAALKESDLRIAVIEGQ 36 (405)
T ss_pred CCCcCCEEEECccHHHHHHHHHHHhCCCEEEEEcCC
Confidence 3457899999999999999999985 9999999986
No 180
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=98.42 E-value=1.2e-05 Score=71.01 Aligned_cols=43 Identities=23% Similarity=0.397 Sum_probs=38.2
Q ss_pred CCCcEEEECCChHHHHHHHHhhcCCcEEEEcCCCceeeeccce
Q 017664 15 EKKKVVVIGGGVGGSLLAYHIQSFADVVLIDEKEYFEITWASL 57 (368)
Q Consensus 15 ~~~~vvIIGaG~aGl~aA~~L~~g~~v~lie~~~~~~~~~~~~ 57 (368)
..++|.|||+|.+||+||+.|.+.++|||+|.+.++|+.-..+
T Consensus 7 ~r~~IAVIGsGisGLSAA~~Ls~rhdVTLfEA~~rlGGha~Tv 49 (447)
T COG2907 7 PRRKIAVIGSGISGLSAAWLLSRRHDVTLFEADRRLGGHANTV 49 (447)
T ss_pred CCcceEEEcccchhhhhHHhhhcccceEEEeccccccCcccee
Confidence 3578999999999999999999999999999999988665444
No 181
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=98.42 E-value=2e-06 Score=86.32 Aligned_cols=54 Identities=9% Similarity=0.163 Sum_probs=44.2
Q ss_pred chhHHHHHHHHHcCCcEEEecceeeecccCCC--eEEcCCCcEEecCEEEEccCCCC
Q 017664 182 SRASQIALDWLTSKKVEVILNQSVTLNTISDG--LIETSSGETIDTDCHFMCTGKAM 236 (368)
Q Consensus 182 ~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~--~v~~~~g~~i~~d~vi~a~G~~p 236 (368)
..+...+.+.+++ |++++.++.|+.++.+++ .+.+.+|+.+.+|.||+|+|...
T Consensus 408 ~~l~~aL~~~a~~-Gv~i~~~~~V~~i~~~~~~~~v~t~~g~~~~ad~VV~A~G~~s 463 (662)
T PRK01747 408 AELCRALLALAGQ-QLTIHFGHEVARLEREDDGWQLDFAGGTLASAPVVVLANGHDA 463 (662)
T ss_pred HHHHHHHHHhccc-CcEEEeCCEeeEEEEeCCEEEEEECCCcEEECCEEEECCCCCc
Confidence 3667778888888 999999999998876555 56777787788999999999763
No 182
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=98.41 E-value=1.9e-07 Score=77.12 Aligned_cols=37 Identities=24% Similarity=0.408 Sum_probs=33.8
Q ss_pred CCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceee
Q 017664 16 KKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEI 52 (368)
Q Consensus 16 ~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~ 52 (368)
..||+||||||+||+||++|+ +|.+|+|+|++-.+|+
T Consensus 30 esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GG 67 (262)
T COG1635 30 ESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGG 67 (262)
T ss_pred hccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCC
Confidence 569999999999999999998 5999999999988763
No 183
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=98.41 E-value=5.3e-06 Score=81.51 Aligned_cols=40 Identities=33% Similarity=0.434 Sum_probs=34.7
Q ss_pred cCCCCCCcEEEECCChHHHHHHHHhhc-CCcEEEEcCCCce
Q 017664 11 AGLVEKKKVVVIGGGVGGSLLAYHIQS-FADVVLIDEKEYF 50 (368)
Q Consensus 11 ~~~~~~~~vvIIGaG~aGl~aA~~L~~-g~~v~lie~~~~~ 50 (368)
+.++.++||+||||||+|+++|..|++ |.+|+|||+.+..
T Consensus 18 ~~~~~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~ 58 (547)
T PRK08132 18 ADDPARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTL 58 (547)
T ss_pred CCCCCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCC
Confidence 444567899999999999999999985 9999999999754
No 184
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=98.41 E-value=7e-06 Score=77.84 Aligned_cols=52 Identities=19% Similarity=0.167 Sum_probs=42.2
Q ss_pred hhHHHHHHHHHcCCcEEEecceeeecccCCC---eEEcCCCcEEecCEEEEccCCC
Q 017664 183 RASQIALDWLTSKKVEVILNQSVTLNTISDG---LIETSSGETIDTDCHFMCTGKA 235 (368)
Q Consensus 183 ~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~---~v~~~~g~~i~~d~vi~a~G~~ 235 (368)
.+...+.+.+++.|+++++++.|+.++.+++ .+.+.++ ++.+|.||+|+|..
T Consensus 202 ~~~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~t~~~-~~~a~~VV~a~G~~ 256 (416)
T PRK00711 202 LFTQRLAAMAEQLGVKFRFNTPVDGLLVEGGRITGVQTGGG-VITADAYVVALGSY 256 (416)
T ss_pred HHHHHHHHHHHHCCCEEEcCCEEEEEEecCCEEEEEEeCCc-EEeCCEEEECCCcc
Confidence 5566777888899999999999998876655 3556655 79999999999975
No 185
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=98.40 E-value=2.6e-06 Score=81.39 Aligned_cols=57 Identities=14% Similarity=0.081 Sum_probs=42.2
Q ss_pred chhHHHHHHHHHcCCcEEEecceeeecccCC-C---eEE--cCCCc--EEecCEEEEccCC-CCCc
Q 017664 182 SRASQIALDWLTSKKVEVILNQSVTLNTISD-G---LIE--TSSGE--TIDTDCHFMCTGK-AMAS 238 (368)
Q Consensus 182 ~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~-~---~v~--~~~g~--~i~~d~vi~a~G~-~p~~ 238 (368)
..+...+.+.+++.|++++++++++++..++ + .++ ..+++ .+.++.||+|+|- ..|.
T Consensus 130 ~~l~~~l~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~~~a~~VVlAtGg~~~n~ 195 (439)
T TIGR01813 130 AEIVQKLYKKAKKEGIDTRLNSKVEDLIQDDQGTVVGVVVKGKGKGIYIKAAKAVVLATGGFGSNK 195 (439)
T ss_pred HHHHHHHHHHHHHcCCEEEeCCEeeEeEECCCCcEEEEEEEeCCCeEEEEecceEEEecCCCCCCH
Confidence 4577788888999999999999999987653 3 233 34443 4789999999994 3433
No 186
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=98.39 E-value=1.1e-06 Score=89.40 Aligned_cols=98 Identities=15% Similarity=0.184 Sum_probs=76.0
Q ss_pred EEEEcCchhHHHHHHHHhhhC-CCCeEEEEecCcccc------cc-cC-----chhHHHHHHHHHcCCcEEEecceeeec
Q 017664 142 VLIVGGGPTGVELAGEIAVDF-PDKKVILVHRGPKLL------EF-VG-----SRASQIALDWLTSKKVEVILNQSVTLN 208 (368)
Q Consensus 142 v~VvG~g~~~~e~a~~l~~~~-~~~~v~~i~~~~~~l------~~-~~-----~~~~~~~~~~l~~~gv~i~~~~~v~~i 208 (368)
++|||+|+.|+.+|..+.+.. .+.+|+++++.+++. +. +. .++.....+++++.||++++++.|..+
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~y~r~~L~~~l~g~~~~~~l~~~~~~~~~~~gv~~~~g~~V~~I 80 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPNYNRILLSSVLQGEADLDDITLNSKDWYEKHGITLYTGETVIQI 80 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCCcccccccHHHCCCCCHHHccCCCHHHHHHCCCEEEcCCeEEEE
Confidence 589999999999999987643 356999999887642 11 11 111122346788899999999999998
Q ss_pred ccCCCeEEcCCCcEEecCEEEEccCCCCCch
Q 017664 209 TISDGLIETSSGETIDTDCHFMCTGKAMASS 239 (368)
Q Consensus 209 ~~~~~~v~~~~g~~i~~d~vi~a~G~~p~~~ 239 (368)
..++..|.+.+|+++++|.+|+|||..|..+
T Consensus 81 d~~~k~V~~~~g~~~~yD~LVlATGs~p~~p 111 (785)
T TIGR02374 81 DTDQKQVITDAGRTLSYDKLILATGSYPFIL 111 (785)
T ss_pred ECCCCEEEECCCcEeeCCEEEECCCCCcCCC
Confidence 8777788899999999999999999987643
No 187
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=98.39 E-value=1.9e-06 Score=80.04 Aligned_cols=98 Identities=17% Similarity=0.300 Sum_probs=61.3
Q ss_pred cEEEECCChHHHHHHHHhhc---CCcEEEEcCCCceeee--ccceeeeec------------ccccc----------c--
Q 017664 18 KVVVIGGGVGGSLLAYHIQS---FADVVLIDEKEYFEIT--WASLRAVVE------------PSFAV----------R-- 68 (368)
Q Consensus 18 ~vvIIGaG~aGl~aA~~L~~---g~~v~lie~~~~~~~~--~~~~~~~~~------------~~~~~----------~-- 68 (368)
||+|||||+||+++|..|++ |.+|+|+|+.+..+.. |........ ..... .
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~~tw~~~~~~~~~~~~~~~~~~v~~~W~~~~v~~~~~~~~l~ 80 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGNHTWSFFDSDLSDAQHAWLADLVQTDWPGYEVRFPKYRRKLK 80 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCcccceecccccchhhhhhhhhhheEeCCCCEEECcchhhhcC
Confidence 79999999999999999973 8999999998855431 111110000 00000 0
Q ss_pred --c-eeecccc--------cCceeEEEeEEEEeeccEEEecCCeEEEecEEEEecCCCC
Q 017664 69 --S-VINHGDY--------LSNVKIVVSTAVSITDTEVVTAGGQTFVYDYVVVATGHVE 116 (368)
Q Consensus 69 --~-~~~~~~~--------~~~~~~~~~~~~~~~~~~v~~~~g~~~~~d~lvlAtG~~~ 116 (368)
+ .....++ -.+ -+....+..++++.+.+.+|.++++|.||-|.|..+
T Consensus 81 ~~Y~~I~r~~f~~~l~~~l~~~-i~~~~~V~~v~~~~v~l~dg~~~~A~~VI~A~G~~s 138 (370)
T TIGR01789 81 TAYRSMTSTRFHEGLLQAFPEG-VILGRKAVGLDADGVDLAPGTRINARSVIDCRGFKP 138 (370)
T ss_pred CCceEEEHHHHHHHHHHhhccc-EEecCEEEEEeCCEEEECCCCEEEeeEEEECCCCCC
Confidence 0 0000000 012 223456777777777778899999999999999874
No 188
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=98.37 E-value=3e-07 Score=76.39 Aligned_cols=38 Identities=24% Similarity=0.243 Sum_probs=30.5
Q ss_pred CCCcEEEECCChHHHHHHHHhhc-CCcEEEEcCCCceee
Q 017664 15 EKKKVVVIGGGVGGSLLAYHIQS-FADVVLIDEKEYFEI 52 (368)
Q Consensus 15 ~~~~vvIIGaG~aGl~aA~~L~~-g~~v~lie~~~~~~~ 52 (368)
.++||+||||||+||+||++|++ |++|+++|++..+|.
T Consensus 16 ~~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GG 54 (230)
T PF01946_consen 16 LEYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGG 54 (230)
T ss_dssp TEESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BT
T ss_pred ccCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCc
Confidence 46899999999999999999985 999999999987763
No 189
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=98.36 E-value=1.3e-06 Score=81.92 Aligned_cols=31 Identities=29% Similarity=0.474 Sum_probs=29.3
Q ss_pred CcEEEECCChHHHHHHHHhhc-CCcEEEEcCC
Q 017664 17 KKVVVIGGGVGGSLLAYHIQS-FADVVLIDEK 47 (368)
Q Consensus 17 ~~vvIIGaG~aGl~aA~~L~~-g~~v~lie~~ 47 (368)
+||+||||||||+++|+.|++ |++|+|+|+.
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~ 32 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARAGIETILLERA 32 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECC
Confidence 699999999999999999985 9999999997
No 190
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=98.36 E-value=9.2e-07 Score=82.97 Aligned_cols=53 Identities=17% Similarity=0.045 Sum_probs=42.0
Q ss_pred chhHHHHHHHHHcCC-cEEEecceeeecccC-CC-eEEcCCCcEEecCEEEEccCCC
Q 017664 182 SRASQIALDWLTSKK-VEVILNQSVTLNTIS-DG-LIETSSGETIDTDCHFMCTGKA 235 (368)
Q Consensus 182 ~~~~~~~~~~l~~~g-v~i~~~~~v~~i~~~-~~-~v~~~~g~~i~~d~vi~a~G~~ 235 (368)
..+...+.+.+++.| ..+..++.+..++.+ .. .+.+.+|+ +.+|.||+|+|..
T Consensus 156 ~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~v~t~~g~-i~a~~vv~a~G~~ 211 (387)
T COG0665 156 RLLTRALAAAAEELGVVIIEGGTPVTSLERDGRVVGVETDGGT-IEADKVVLAAGAW 211 (387)
T ss_pred HHHHHHHHHHHHhcCCeEEEccceEEEEEecCcEEEEEeCCcc-EEeCEEEEcCchH
Confidence 466778888899999 556668888877764 33 78888886 9999999999965
No 191
>PRK07236 hypothetical protein; Provisional
Probab=98.36 E-value=2.4e-06 Score=80.22 Aligned_cols=36 Identities=28% Similarity=0.423 Sum_probs=32.3
Q ss_pred CCCCcEEEECCChHHHHHHHHhhc-CCcEEEEcCCCc
Q 017664 14 VEKKKVVVIGGGVGGSLLAYHIQS-FADVVLIDEKEY 49 (368)
Q Consensus 14 ~~~~~vvIIGaG~aGl~aA~~L~~-g~~v~lie~~~~ 49 (368)
++.++|+|||||++|+++|..|++ |.+|+|+|+.+.
T Consensus 4 ~~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 40 (386)
T PRK07236 4 MSGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPT 40 (386)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 446899999999999999999985 999999999864
No 192
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.35 E-value=1.6e-06 Score=81.56 Aligned_cols=33 Identities=30% Similarity=0.558 Sum_probs=30.4
Q ss_pred CCCcEEEECCChHHHHHHHHhhc----CCcEEEEcCC
Q 017664 15 EKKKVVVIGGGVGGSLLAYHIQS----FADVVLIDEK 47 (368)
Q Consensus 15 ~~~~vvIIGaG~aGl~aA~~L~~----g~~v~lie~~ 47 (368)
+++||+||||||||+++|..|++ |.+|+|+|+.
T Consensus 2 ~~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~ 38 (395)
T PRK05732 2 SRMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAF 38 (395)
T ss_pred CcCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCC
Confidence 56899999999999999999974 9999999994
No 193
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=98.35 E-value=3e-06 Score=80.45 Aligned_cols=98 Identities=9% Similarity=0.083 Sum_probs=72.4
Q ss_pred cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccc--ccc---------CchhHHHHHHHHHcCCcEEEecceee
Q 017664 138 SANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLL--EFV---------GSRASQIALDWLTSKKVEVILNQSVT 206 (368)
Q Consensus 138 ~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l--~~~---------~~~~~~~~~~~l~~~gv~i~~~~~v~ 206 (368)
..++++|||+|+.|+.+|..|. ..+.+|++|++++.+. +.+ ...+...+.+.+++.+++++. .+|.
T Consensus 9 ~~~~vVIvGgG~aGl~~a~~L~--~~~~~ItlI~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~-~~V~ 85 (424)
T PTZ00318 9 KKPNVVVLGTGWAGAYFVRNLD--PKKYNITVISPRNHMLFTPLLPQTTTGTLEFRSICEPVRPALAKLPNRYLR-AVVY 85 (424)
T ss_pred CCCeEEEECCCHHHHHHHHHhC--cCCCeEEEEcCCCCcchhhhHHHhcccCCChHHhHHHHHHHhccCCeEEEE-EEEE
Confidence 3578999999999999998885 2467899999887642 111 112333355667778898875 5788
Q ss_pred ecccCCCeEEc----------CCCcEEecCEEEEccCCCCCc
Q 017664 207 LNTISDGLIET----------SSGETIDTDCHFMCTGKAMAS 238 (368)
Q Consensus 207 ~i~~~~~~v~~----------~~g~~i~~d~vi~a~G~~p~~ 238 (368)
.|+.++..+.+ .+|+++++|.+|+|||..|..
T Consensus 86 ~Id~~~~~v~~~~~~~~~~~~~~g~~i~yD~LViAtGs~~~~ 127 (424)
T PTZ00318 86 DVDFEEKRVKCGVVSKSNNANVNTFSVPYDKLVVAHGARPNT 127 (424)
T ss_pred EEEcCCCEEEEecccccccccCCceEecCCEEEECCCcccCC
Confidence 88877776665 467789999999999998754
No 194
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=98.35 E-value=2.1e-06 Score=72.81 Aligned_cols=90 Identities=21% Similarity=0.339 Sum_probs=62.2
Q ss_pred EEEcCchhHHHHHHHHhhhCCCCe-EEEEecCcccc--------------cc-c--------------------------
Q 017664 143 LIVGGGPTGVELAGEIAVDFPDKK-VILVHRGPKLL--------------EF-V-------------------------- 180 (368)
Q Consensus 143 ~VvG~g~~~~e~a~~l~~~~~~~~-v~~i~~~~~~l--------------~~-~-------------------------- 180 (368)
+|||+|++|+-+|..|.++ +.+ +.++++++.+. +. +
T Consensus 1 ~IIGaG~aGl~~a~~l~~~--g~~~v~v~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLER--GIDPVVVLERNDRPGGVWRRYYSYTRLHSPSFFSSDFGLPDFESFSFDDSPEWRWPHDF 78 (203)
T ss_dssp EEE--SHHHHHHHHHHHHT--T---EEEEESSSSSTTHHHCH-TTTT-BSSSCCTGGSS--CCCHSCHHHHHHHHHSBSS
T ss_pred CEECcCHHHHHHHHHHHhC--CCCcEEEEeCCCCCCCeeEEeCCCCccccCccccccccCCcccccccccCCCCCCCccc
Confidence 6999999999999999864 666 99999874321 00 0
Q ss_pred --CchhHHHHHHHHHcCCcEEEecceeeecccCCC--eEEcCCCcEEecCEEEEccCC
Q 017664 181 --GSRASQIALDWLTSKKVEVILNQSVTLNTISDG--LIETSSGETIDTDCHFMCTGK 234 (368)
Q Consensus 181 --~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~--~v~~~~g~~i~~d~vi~a~G~ 234 (368)
.+++.+++++.+++.+++++++++|++++.+++ .+.+.+++++.+|.||+|||.
T Consensus 79 ~~~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~w~v~~~~~~~~~a~~VVlAtG~ 136 (203)
T PF13738_consen 79 PSGEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDGWTVTTRDGRTIRADRVVLATGH 136 (203)
T ss_dssp EBHHHHHHHHHHHHHHTTGGEETS--EEEEEEETTTEEEEETTS-EEEEEEEEE---S
T ss_pred CCHHHHHHHHHHHHhhcCcccccCCEEEEEEEeccEEEEEEEecceeeeeeEEEeeec
Confidence 012335566778889999999999999988765 788999888999999999996
No 195
>PRK07045 putative monooxygenase; Reviewed
Probab=98.33 E-value=2.2e-06 Score=80.55 Aligned_cols=37 Identities=19% Similarity=0.258 Sum_probs=32.9
Q ss_pred CCCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCce
Q 017664 14 VEKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYF 50 (368)
Q Consensus 14 ~~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~ 50 (368)
+.++||+||||||+|+++|..|+ +|++|+|+|+.+..
T Consensus 3 ~~~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~ 40 (388)
T PRK07045 3 NNPVDVLINGSGIAGVALAHLLGARGHSVTVVERAARN 40 (388)
T ss_pred CceeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcc
Confidence 35689999999999999999998 49999999988753
No 196
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.31 E-value=5e-06 Score=80.91 Aligned_cols=98 Identities=22% Similarity=0.330 Sum_probs=76.8
Q ss_pred cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecC--cccc-----------c-ccCchhHHHHHHHHHcCCcEEEecc
Q 017664 138 SANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRG--PKLL-----------E-FVGSRASQIALDWLTSKKVEVILNQ 203 (368)
Q Consensus 138 ~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~--~~~l-----------~-~~~~~~~~~~~~~l~~~gv~i~~~~ 203 (368)
...+++|||+|+.|+.+|..+.+ .+.+|+++... ..+. + ...+++.+.+.+.+++.|++++.++
T Consensus 211 ~~~dVvIIGgGpAGl~AA~~la~--~G~~v~li~~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~gv~i~~~~ 288 (515)
T TIGR03140 211 DPYDVLVVGGGPAGAAAAIYAAR--KGLRTAMVAERIGGQVKDTVGIENLISVPYTTGSQLAANLEEHIKQYPIDLMENQ 288 (515)
T ss_pred CCCCEEEECCCHHHHHHHHHHHH--CCCcEEEEecCCCCccccCcCcccccccCCCCHHHHHHHHHHHHHHhCCeEEcCC
Confidence 45789999999999999999985 58899988642 1110 0 1234566777888899999999999
Q ss_pred eeeecccCCC--eEEcCCCcEEecCEEEEccCCCCC
Q 017664 204 SVTLNTISDG--LIETSSGETIDTDCHFMCTGKAMA 237 (368)
Q Consensus 204 ~v~~i~~~~~--~v~~~~g~~i~~d~vi~a~G~~p~ 237 (368)
+|..+..+++ .+.+.+|+.+.+|.+|+|+|..|.
T Consensus 289 ~V~~I~~~~~~~~v~~~~g~~i~~d~lIlAtGa~~~ 324 (515)
T TIGR03140 289 RAKKIETEDGLIVVTLESGEVLKAKSVIVATGARWR 324 (515)
T ss_pred EEEEEEecCCeEEEEECCCCEEEeCEEEECCCCCcC
Confidence 9998876554 667778889999999999998764
No 197
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=98.31 E-value=3.6e-06 Score=77.71 Aligned_cols=99 Identities=21% Similarity=0.229 Sum_probs=78.3
Q ss_pred CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccc--c---------cCchhHHHHHHHHHcCC-cEEEecceee
Q 017664 139 ANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLE--F---------VGSRASQIALDWLTSKK-VEVILNQSVT 206 (368)
Q Consensus 139 ~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~--~---------~~~~~~~~~~~~l~~~g-v~i~~~~~v~ 206 (368)
.+++||+|||+.|+.++..|.+..++.+|+++++.+.++- . -+.++...+++.+++.+ ++++.+ +|+
T Consensus 3 ~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl~~plL~eva~g~l~~~~i~~p~~~~~~~~~~v~~~~~-~V~ 81 (405)
T COG1252 3 KKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHLFTPLLYEVATGTLSESEIAIPLRALLRKSGNVQFVQG-EVT 81 (405)
T ss_pred CceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCccccchhhhhhhcCCCChhheeccHHHHhcccCceEEEEE-EEE
Confidence 5789999999999999999986422578999999886531 1 12344555778888555 998865 578
Q ss_pred ecccCCCeEEcCCCcEEecCEEEEccCCCCCc
Q 017664 207 LNTISDGLIETSSGETIDTDCHFMCTGKAMAS 238 (368)
Q Consensus 207 ~i~~~~~~v~~~~g~~i~~d~vi~a~G~~p~~ 238 (368)
.|..++..|.+.++..+++|.+|+++|..++.
T Consensus 82 ~ID~~~k~V~~~~~~~i~YD~LVvalGs~~~~ 113 (405)
T COG1252 82 DIDRDAKKVTLADLGEISYDYLVVALGSETNY 113 (405)
T ss_pred EEcccCCEEEeCCCccccccEEEEecCCcCCc
Confidence 88888889999997789999999999998765
No 198
>PLN02612 phytoene desaturase
Probab=98.30 E-value=9.1e-06 Score=79.84 Aligned_cols=52 Identities=21% Similarity=0.216 Sum_probs=43.9
Q ss_pred chhHHHHHHHHHcCCcEEEecceeeecccCCC----eEEcCCCcEEecCEEEEccC
Q 017664 182 SRASQIALDWLTSKKVEVILNQSVTLNTISDG----LIETSSGETIDTDCHFMCTG 233 (368)
Q Consensus 182 ~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~----~v~~~~g~~i~~d~vi~a~G 233 (368)
..+.+.+.+.+++.|.+++++++|++|+.+++ .+++.+|+++++|.||+++.
T Consensus 308 ~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~v~~~~G~~~~ad~VI~a~p 363 (567)
T PLN02612 308 ERLCMPIVDHFQSLGGEVRLNSRIKKIELNDDGTVKHFLLTNGSVVEGDVYVSATP 363 (567)
T ss_pred HHHHHHHHHHHHhcCCEEEeCCeeeEEEECCCCcEEEEEECCCcEEECCEEEECCC
Confidence 35678888889899999999999999987533 36778898999999999975
No 199
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.30 E-value=5.3e-06 Score=80.79 Aligned_cols=97 Identities=20% Similarity=0.266 Sum_probs=76.7
Q ss_pred CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCc--cc--------cc----ccCchhHHHHHHHHHcCCcEEEecce
Q 017664 139 ANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGP--KL--------LE----FVGSRASQIALDWLTSKKVEVILNQS 204 (368)
Q Consensus 139 ~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~--~~--------l~----~~~~~~~~~~~~~l~~~gv~i~~~~~ 204 (368)
..+++|||+|+.|+.+|..+.+ .+.++.++.... .. .+ ...+++.+.+.+++++.|++++.+++
T Consensus 211 ~~dvvIIGgGpaGl~aA~~la~--~G~~v~li~~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~ 288 (517)
T PRK15317 211 PYDVLVVGGGPAGAAAAIYAAR--KGIRTGIVAERFGGQVLDTMGIENFISVPETEGPKLAAALEEHVKEYDVDIMNLQR 288 (517)
T ss_pred CCCEEEECCCHHHHHHHHHHHH--CCCcEEEEecCCCCeeeccCcccccCCCCCCCHHHHHHHHHHHHHHCCCEEEcCCE
Confidence 4689999999999999999985 588888886531 11 01 12345677788889999999999999
Q ss_pred eeecccCCC--eEEcCCCcEEecCEEEEccCCCCC
Q 017664 205 VTLNTISDG--LIETSSGETIDTDCHFMCTGKAMA 237 (368)
Q Consensus 205 v~~i~~~~~--~v~~~~g~~i~~d~vi~a~G~~p~ 237 (368)
+..+...++ .+.+.+|+++.+|.+|+|+|..|.
T Consensus 289 V~~I~~~~~~~~V~~~~g~~i~a~~vViAtG~~~r 323 (517)
T PRK15317 289 ASKLEPAAGLIEVELANGAVLKAKTVILATGARWR 323 (517)
T ss_pred EEEEEecCCeEEEEECCCCEEEcCEEEECCCCCcC
Confidence 998877644 677788889999999999998764
No 200
>PRK06475 salicylate hydroxylase; Provisional
Probab=98.29 E-value=6.4e-06 Score=77.69 Aligned_cols=53 Identities=19% Similarity=0.202 Sum_probs=39.4
Q ss_pred hhHHHHHHHHHc-CCcEEEecceeeecccCCC--eEEc---CCCcEEecCEEEEccCCC
Q 017664 183 RASQIALDWLTS-KKVEVILNQSVTLNTISDG--LIET---SSGETIDTDCHFMCTGKA 235 (368)
Q Consensus 183 ~~~~~~~~~l~~-~gv~i~~~~~v~~i~~~~~--~v~~---~~g~~i~~d~vi~a~G~~ 235 (368)
.+.+.+.+.+.+ .+++++.++++..++.+++ .+.+ .+++++++|+||-|-|..
T Consensus 108 ~l~~~L~~~~~~~~~i~v~~~~~v~~~~~~~~~v~v~~~~~~~~~~~~adlvIgADG~~ 166 (400)
T PRK06475 108 DLQSALLDACRNNPGIEIKLGAEMTSQRQTGNSITATIIRTNSVETVSAAYLIACDGVW 166 (400)
T ss_pred HHHHHHHHHHHhcCCcEEEECCEEEEEecCCCceEEEEEeCCCCcEEecCEEEECCCcc
Confidence 455666666655 4899999999998877655 3443 344689999999999975
No 201
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=98.29 E-value=2.4e-06 Score=80.05 Aligned_cols=32 Identities=28% Similarity=0.507 Sum_probs=29.5
Q ss_pred cEEEECCChHHHHHHHHhhc-C-CcEEEEcCCCc
Q 017664 18 KVVVIGGGVGGSLLAYHIQS-F-ADVVLIDEKEY 49 (368)
Q Consensus 18 ~vvIIGaG~aGl~aA~~L~~-g-~~v~lie~~~~ 49 (368)
||+||||||+|+++|..|++ | ++|+|+|+.+.
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~ 34 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSP 34 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCc
Confidence 79999999999999999985 9 99999999864
No 202
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.27 E-value=9.4e-07 Score=84.51 Aligned_cols=47 Identities=28% Similarity=0.347 Sum_probs=40.2
Q ss_pred cCCCCCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeeccce
Q 017664 11 AGLVEKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITWASL 57 (368)
Q Consensus 11 ~~~~~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~~~~ 57 (368)
+...++++|||||||+|||+||+.|. .|++|+|+|..+..|+.....
T Consensus 10 ~~~~~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvGGRI~t~ 57 (501)
T KOG0029|consen 10 PEAGKKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVGGRIYTF 57 (501)
T ss_pred ccccCCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcCceeEEE
Confidence 34556789999999999999999998 499999999999998665443
No 203
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=98.27 E-value=2.6e-06 Score=69.01 Aligned_cols=35 Identities=49% Similarity=0.593 Sum_probs=29.2
Q ss_pred eeEEEeEEEEeecc----EEEecCCeEEEecEEEEecCC
Q 017664 80 VKIVVSTAVSITDT----EVVTAGGQTFVYDYVVVATGH 114 (368)
Q Consensus 80 ~~~~~~~~~~~~~~----~v~~~~g~~~~~d~lvlAtG~ 114 (368)
++++..+++.++.. .+.+.+|..+.+|+||+|||.
T Consensus 117 v~~~~~~V~~i~~~~~~~~v~~~~g~~~~~d~VvLa~Gh 155 (156)
T PF13454_consen 117 VRHVRAEVVDIRRDDDGYRVVTADGQSIRADAVVLATGH 155 (156)
T ss_pred EEEEeeEEEEEEEcCCcEEEEECCCCEEEeCEEEECCCC
Confidence 45677888888754 678889999999999999996
No 204
>PRK05868 hypothetical protein; Validated
Probab=98.25 E-value=5.2e-06 Score=77.40 Aligned_cols=34 Identities=29% Similarity=0.393 Sum_probs=30.9
Q ss_pred CCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCc
Q 017664 16 KKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEY 49 (368)
Q Consensus 16 ~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~ 49 (368)
++||+|||||++|+++|..|+ +|++|+|+|+.+.
T Consensus 1 ~~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~ 35 (372)
T PRK05868 1 MKTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPG 35 (372)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Confidence 358999999999999999997 5999999999875
No 205
>PRK06753 hypothetical protein; Provisional
Probab=98.24 E-value=3.6e-06 Score=78.63 Aligned_cols=33 Identities=30% Similarity=0.497 Sum_probs=30.4
Q ss_pred CcEEEECCChHHHHHHHHhhc-CCcEEEEcCCCc
Q 017664 17 KKVVVIGGGVGGSLLAYHIQS-FADVVLIDEKEY 49 (368)
Q Consensus 17 ~~vvIIGaG~aGl~aA~~L~~-g~~v~lie~~~~ 49 (368)
.||+||||||+|+++|..|++ |++|+|+|+.+.
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~ 34 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQGHEVKVFEKNES 34 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence 379999999999999999984 999999999975
No 206
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=98.22 E-value=1.9e-06 Score=82.14 Aligned_cols=53 Identities=25% Similarity=0.342 Sum_probs=38.5
Q ss_pred hhHHHHHHHHHcCCcEEEecceeeecccC-CC---eEEcCCCcEEecCEEEEccCCCC
Q 017664 183 RASQIALDWLTSKKVEVILNQSVTLNTIS-DG---LIETSSGETIDTDCHFMCTGKAM 236 (368)
Q Consensus 183 ~~~~~~~~~l~~~gv~i~~~~~v~~i~~~-~~---~v~~~~g~~i~~d~vi~a~G~~p 236 (368)
.+.+.+.+..++.||+++.++ |..+..+ ++ .|++++|+++++|++|=|+|++.
T Consensus 155 ~fd~~L~~~A~~~Gv~~~~g~-V~~v~~~~~g~i~~v~~~~g~~i~ad~~IDASG~~s 211 (454)
T PF04820_consen 155 KFDQFLRRHAEERGVEVIEGT-VVDVELDEDGRITAVRLDDGRTIEADFFIDASGRRS 211 (454)
T ss_dssp HHHHHHHHHHHHTT-EEEET--EEEEEE-TTSEEEEEEETTSEEEEESEEEE-SGGG-
T ss_pred HHHHHHHHHHhcCCCEEEeCE-EEEEEEcCCCCEEEEEECCCCEEEEeEEEECCCccc
Confidence 456667788889999999886 5555444 33 68889999999999999999863
No 207
>PRK06996 hypothetical protein; Provisional
Probab=98.21 E-value=1.9e-05 Score=74.38 Aligned_cols=52 Identities=6% Similarity=0.021 Sum_probs=41.7
Q ss_pred hhHHHHHHHHHcCCcEEEecceeeecccCCC--eEEcCCC---cEEecCEEEEccCC
Q 017664 183 RASQIALDWLTSKKVEVILNQSVTLNTISDG--LIETSSG---ETIDTDCHFMCTGK 234 (368)
Q Consensus 183 ~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~--~v~~~~g---~~i~~d~vi~a~G~ 234 (368)
.+.+.+.+.+++.|++++.++++..++.+.+ .+.+.++ +++.+|++|-|-|.
T Consensus 116 ~l~~~L~~~~~~~g~~~~~~~~v~~~~~~~~~v~v~~~~~~g~~~i~a~lvIgADG~ 172 (398)
T PRK06996 116 SLVAALARAVRGTPVRWLTSTTAHAPAQDADGVTLALGTPQGARTLRARIAVQAEGG 172 (398)
T ss_pred HHHHHHHHHHHhCCCEEEcCCeeeeeeecCCeEEEEECCCCcceEEeeeEEEECCCC
Confidence 5667788888889999999999988866554 5555544 58999999999995
No 208
>PRK07208 hypothetical protein; Provisional
Probab=98.19 E-value=1.7e-06 Score=83.58 Aligned_cols=42 Identities=26% Similarity=0.341 Sum_probs=38.1
Q ss_pred CCCCCcEEEECCChHHHHHHHHhhc-CCcEEEEcCCCceeeec
Q 017664 13 LVEKKKVVVIGGGVGGSLLAYHIQS-FADVVLIDEKEYFEITW 54 (368)
Q Consensus 13 ~~~~~~vvIIGaG~aGl~aA~~L~~-g~~v~lie~~~~~~~~~ 54 (368)
|++++||+|||||++||+||+.|++ |++|+|+|+++.+|+..
T Consensus 1 ~~~~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~~GG~~ 43 (479)
T PRK07208 1 MTNKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVGGIS 43 (479)
T ss_pred CCCCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcee
Confidence 5778899999999999999999984 99999999999988654
No 209
>PLN02985 squalene monooxygenase
Probab=98.14 E-value=1.1e-05 Score=78.32 Aligned_cols=36 Identities=33% Similarity=0.523 Sum_probs=32.0
Q ss_pred CCCCCcEEEECCChHHHHHHHHhhc-CCcEEEEcCCC
Q 017664 13 LVEKKKVVVIGGGVGGSLLAYHIQS-FADVVLIDEKE 48 (368)
Q Consensus 13 ~~~~~~vvIIGaG~aGl~aA~~L~~-g~~v~lie~~~ 48 (368)
....+||+|||||++|+++|..|++ |.+|+|+|+..
T Consensus 40 ~~~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~ 76 (514)
T PLN02985 40 KDGATDVIIVGAGVGGSALAYALAKDGRRVHVIERDL 76 (514)
T ss_pred cCCCceEEEECCCHHHHHHHHHHHHcCCeEEEEECcC
Confidence 3446899999999999999999985 99999999875
No 210
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=98.14 E-value=1.2e-05 Score=78.86 Aligned_cols=36 Identities=22% Similarity=0.308 Sum_probs=32.8
Q ss_pred CCCCcEEEECCChHHHHHHHHhhc-CCcEEEEcCCCc
Q 017664 14 VEKKKVVVIGGGVGGSLLAYHIQS-FADVVLIDEKEY 49 (368)
Q Consensus 14 ~~~~~vvIIGaG~aGl~aA~~L~~-g~~v~lie~~~~ 49 (368)
+..+||+||||||+|+++|..|++ |.+|+|+|+.+.
T Consensus 8 ~~~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~ 44 (538)
T PRK06183 8 AHDTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPT 44 (538)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 567899999999999999999985 999999999974
No 211
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=98.12 E-value=3.3e-06 Score=80.43 Aligned_cols=35 Identities=34% Similarity=0.441 Sum_probs=31.6
Q ss_pred CCCcEEEECCChHHHHHHHHhhc-CCcEEEEcCCCc
Q 017664 15 EKKKVVVIGGGVGGSLLAYHIQS-FADVVLIDEKEY 49 (368)
Q Consensus 15 ~~~~vvIIGaG~aGl~aA~~L~~-g~~v~lie~~~~ 49 (368)
.++||+||||||||+++|..|++ |++|+|+|+...
T Consensus 38 ~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~~ 73 (450)
T PLN00093 38 RKLRVAVIGGGPAGACAAETLAKGGIETFLIERKLD 73 (450)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Confidence 46899999999999999999984 999999998853
No 212
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=98.11 E-value=3.8e-06 Score=71.05 Aligned_cols=97 Identities=30% Similarity=0.438 Sum_probs=69.8
Q ss_pred eEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccc---cc-----------CchhH--H--HHHHHHHcCCcEEEec
Q 017664 141 SVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLE---FV-----------GSRAS--Q--IALDWLTSKKVEVILN 202 (368)
Q Consensus 141 ~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~---~~-----------~~~~~--~--~~~~~l~~~gv~i~~~ 202 (368)
+|+|||+|+.|+.+|..|.+ .+.+++++++.+.... .. ..... . .+.+.+...+++++.+
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~--~~~~v~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 78 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELAR--PGAKVLIIEKSPGTPYNSGCIPSPLLVEIAPHRHEFLPARLFKLVDQLKNRGVEIRLN 78 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHH--TTSEEEEESSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHHGHHHHHHHHHTHEEEHH
T ss_pred CEEEEecHHHHHHHHHHHhc--CCCeEEEEecccccccccccccccccccccccccccccccccccccccccceEEEeec
Confidence 58999999999999999994 6899999976653110 00 00011 1 4445557789999989
Q ss_pred ceeeecccCCCe-------E---EcCCCcEEecCEEEEccCCCCCch
Q 017664 203 QSVTLNTISDGL-------I---ETSSGETIDTDCHFMCTGKAMASS 239 (368)
Q Consensus 203 ~~v~~i~~~~~~-------v---~~~~g~~i~~d~vi~a~G~~p~~~ 239 (368)
+++.++...... + ...++.++.+|.+|+|+|..|..+
T Consensus 79 ~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~~ 125 (201)
T PF07992_consen 79 AKVVSIDPESKRVVCPAVTIQVVETGDGREIKYDYLVIATGSRPRTP 125 (201)
T ss_dssp HTEEEEEESTTEEEETCEEEEEEETTTEEEEEEEEEEEESTEEEEEE
T ss_pred cccccccccccccccCcccceeeccCCceEecCCeeeecCcccccee
Confidence 998888766552 1 345667899999999999887654
No 213
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=98.10 E-value=5.3e-05 Score=69.98 Aligned_cols=45 Identities=22% Similarity=0.434 Sum_probs=37.2
Q ss_pred CCCCCcEEEECCChHHHHHHHHhh-c-CCcEEEEcCCCceeeeccce
Q 017664 13 LVEKKKVVVIGGGVGGSLLAYHIQ-S-FADVVLIDEKEYFEITWASL 57 (368)
Q Consensus 13 ~~~~~~vvIIGaG~aGl~aA~~L~-~-g~~v~lie~~~~~~~~~~~~ 57 (368)
+....+|||||||.|||+||.+|- . ..+++|+|..+.+|+.....
T Consensus 18 ~~~~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGGRI~ti 64 (498)
T KOG0685|consen 18 ARGNAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGGRIHTI 64 (498)
T ss_pred ccCCceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccCceEeeE
Confidence 334678999999999999999986 4 67999999999998665443
No 214
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=98.09 E-value=5.5e-05 Score=72.30 Aligned_cols=100 Identities=20% Similarity=0.296 Sum_probs=71.7
Q ss_pred cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccc----------------------------------------
Q 017664 138 SANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLL---------------------------------------- 177 (368)
Q Consensus 138 ~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l---------------------------------------- 177 (368)
..++|+|||+|++|+-+|..+.+ .+.+|+++++++.+.
T Consensus 9 ~~~~VaIIGAG~aGL~aA~~l~~--~G~~v~vfE~~~~vGG~W~~~~~~~~d~~~~~~~~~~~~s~~Y~~L~tn~p~~~m 86 (461)
T PLN02172 9 NSQHVAVIGAGAAGLVAARELRR--EGHTVVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVHSSVYESLRTNLPRECM 86 (461)
T ss_pred CCCCEEEECCcHHHHHHHHHHHh--cCCeEEEEecCCCCcceeecCCCcCCCccccCCCCcccchhhhhhhhccCCHhhc
Confidence 36899999999999999999985 477888888764221
Q ss_pred -----cccC---------------chhHHHHHHHHHcCCcE--EEecceeeecccCCC--eEEcCCC--c--EEecCEEE
Q 017664 178 -----EFVG---------------SRASQIALDWLTSKKVE--VILNQSVTLNTISDG--LIETSSG--E--TIDTDCHF 229 (368)
Q Consensus 178 -----~~~~---------------~~~~~~~~~~l~~~gv~--i~~~~~v~~i~~~~~--~v~~~~g--~--~i~~d~vi 229 (368)
|..+ .++.+++++..+..|+. ++++++|..++..++ .|.+.++ . +..+|.||
T Consensus 87 ~f~dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~~~w~V~~~~~~~~~~~~~~d~VI 166 (461)
T PLN02172 87 GYRDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVDGKWRVQSKNSGGFSKDEIFDAVV 166 (461)
T ss_pred cCCCCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecCCeEEEEEEcCCCceEEEEcCEEE
Confidence 0000 23455666777788888 889999999987655 5555432 2 46799999
Q ss_pred EccC--CCCCch
Q 017664 230 MCTG--KAMASS 239 (368)
Q Consensus 230 ~a~G--~~p~~~ 239 (368)
+|+| ..|..+
T Consensus 167 vAtG~~~~P~~P 178 (461)
T PLN02172 167 VCNGHYTEPNVA 178 (461)
T ss_pred EeccCCCCCcCC
Confidence 9999 455543
No 215
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=98.08 E-value=1.3e-05 Score=75.84 Aligned_cols=99 Identities=20% Similarity=0.254 Sum_probs=65.7
Q ss_pred CCCcEEEECCChHHHHHHHHhhc-CCcEEEEcCCCceeeeccceeeeecccccccceeecccccCceeEEEe-EEEEeec
Q 017664 15 EKKKVVVIGGGVGGSLLAYHIQS-FADVVLIDEKEYFEITWASLRAVVEPSFAVRSVINHGDYLSNVKIVVS-TAVSITD 92 (368)
Q Consensus 15 ~~~~vvIIGaG~aGl~aA~~L~~-g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 92 (368)
.+.+++|||||+-|+-.|..+++ |.+|||+|+.+.+-. ..+++..........+ .++.+... .+..+..
T Consensus 172 lP~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iLp-------~~D~ei~~~~~~~l~~--~gv~i~~~~~v~~~~~ 242 (454)
T COG1249 172 LPKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRILP-------GEDPEISKELTKQLEK--GGVKILLNTKVTAVEK 242 (454)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCC-------cCCHHHHHHHHHHHHh--CCeEEEccceEEEEEe
Confidence 45689999999999999998885 999999999987642 1122211111111111 24555444 3333332
Q ss_pred c----EEEecCCe--EEEecEEEEecCCCCCCCCch
Q 017664 93 T----EVVTAGGQ--TFVYDYVVVATGHVESVPKSR 122 (368)
Q Consensus 93 ~----~v~~~~g~--~~~~d~lvlAtG~~~~~p~~~ 122 (368)
. .+.++++. .+++|++++|+|.+|+.+++.
T Consensus 243 ~~~~v~v~~~~g~~~~~~ad~vLvAiGR~Pn~~~Lg 278 (454)
T COG1249 243 KDDGVLVTLEDGEGGTIEADAVLVAIGRKPNTDGLG 278 (454)
T ss_pred cCCeEEEEEecCCCCEEEeeEEEEccCCccCCCCCC
Confidence 1 45566665 688999999999999998754
No 216
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.06 E-value=4.3e-06 Score=79.44 Aligned_cols=63 Identities=16% Similarity=0.132 Sum_probs=46.7
Q ss_pred CchhHHHHHHHHHcCCcEEEecceeeecccCCC--eEEcCC---Cc--EEecCEEEEccCCCCCchhhhcc
Q 017664 181 GSRASQIALDWLTSKKVEVILNQSVTLNTISDG--LIETSS---GE--TIDTDCHFMCTGKAMASSWLRET 244 (368)
Q Consensus 181 ~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~--~v~~~~---g~--~i~~d~vi~a~G~~p~~~~~~~~ 244 (368)
+..+.........++|-++.+.++|+.+..+++ .|+..| |+ ++.++.||.|+|.-. -+++...
T Consensus 163 daRLv~~~a~~A~~~Ga~il~~~~v~~~~re~~v~gV~~~D~~tg~~~~ira~~VVNAaGpW~-d~i~~~~ 232 (532)
T COG0578 163 DARLVAANARDAAEHGAEILTYTRVESLRREGGVWGVEVEDRETGETYEIRARAVVNAAGPWV-DEILEMA 232 (532)
T ss_pred hHHHHHHHHHHHHhcccchhhcceeeeeeecCCEEEEEEEecCCCcEEEEEcCEEEECCCccH-HHHHHhh
Confidence 346666777788899999999999999988877 555544 32 688999999999763 3344433
No 217
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=98.06 E-value=1.8e-05 Score=72.95 Aligned_cols=100 Identities=25% Similarity=0.338 Sum_probs=78.3
Q ss_pred cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccc----------ccCchhHHHHHHHHHcCCcEEEecceeee
Q 017664 138 SANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLE----------FVGSRASQIALDWLTSKKVEVILNQSVTL 207 (368)
Q Consensus 138 ~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~----------~~~~~~~~~~~~~l~~~gv~i~~~~~v~~ 207 (368)
..++++|+|+|+.|.-++..+.+..+-..++++.+...+.. .....+.....++.++.||+++.++.|++
T Consensus 73 ~ar~fvivGgG~~g~vaie~~r~~g~~~ri~l~~~~~~~pydr~~Ls~~~~~~~~~~a~r~~e~Yke~gIe~~~~t~v~~ 152 (478)
T KOG1336|consen 73 AARHFVIVGGGPGGAVAIETLRQVGFTERIALVKREYLLPYDRARLSKFLLTVGEGLAKRTPEFYKEKGIELILGTSVVK 152 (478)
T ss_pred ccceEEEEcCCchhhhhHhhHHhhCCCcceEEEeccccCcccchhcccceeeccccccccChhhHhhcCceEEEcceeEE
Confidence 47889999999998777777776555567888876543211 11233444456788999999999999999
Q ss_pred cccCCCeEEcCCCcEEecCEEEEccCCCCC
Q 017664 208 NTISDGLIETSSGETIDTDCHFMCTGKAMA 237 (368)
Q Consensus 208 i~~~~~~v~~~~g~~i~~d~vi~a~G~~p~ 237 (368)
+..++..+.+.+|+.+++|.+++|||..|.
T Consensus 153 ~D~~~K~l~~~~Ge~~kys~LilATGs~~~ 182 (478)
T KOG1336|consen 153 ADLASKTLVLGNGETLKYSKLIIATGSSAK 182 (478)
T ss_pred eeccccEEEeCCCceeecceEEEeecCccc
Confidence 998888999999999999999999999543
No 218
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.05 E-value=2.3e-05 Score=77.28 Aligned_cols=53 Identities=13% Similarity=0.120 Sum_probs=40.8
Q ss_pred chhHHHHHHHHHcCCcEEEecceeeecccCCC---eE---EcCCCc--EEecCEEEEccCC
Q 017664 182 SRASQIALDWLTSKKVEVILNQSVTLNTISDG---LI---ETSSGE--TIDTDCHFMCTGK 234 (368)
Q Consensus 182 ~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~---~v---~~~~g~--~i~~d~vi~a~G~ 234 (368)
..+...+.+.+++.||++++++.+..+..+++ ++ ...+|+ .+.++.||+|||-
T Consensus 135 ~~i~~~L~~~~~~~gi~i~~~t~v~~L~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVlATGG 195 (575)
T PRK05945 135 HAILHELVNNLRRYGVTIYDEWYVMRLILEDNQAKGVVMYHIADGRLEVVRAKAVMFATGG 195 (575)
T ss_pred HHHHHHHHHHHhhCCCEEEeCcEEEEEEEECCEEEEEEEEEcCCCeEEEEECCEEEECCCC
Confidence 35677788888889999999999988765555 22 334564 5889999999995
No 219
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=98.04 E-value=5.1e-06 Score=70.94 Aligned_cols=36 Identities=17% Similarity=0.373 Sum_probs=32.7
Q ss_pred CcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceee
Q 017664 17 KKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEI 52 (368)
Q Consensus 17 ~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~ 52 (368)
.+|+|||+|+||++||+.|+ .|.+|+|+||+.-.|+
T Consensus 2 ~siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGG 38 (331)
T COG3380 2 PSIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGG 38 (331)
T ss_pred CcEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCccc
Confidence 57999999999999999999 5999999999987654
No 220
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=98.04 E-value=1.7e-05 Score=81.85 Aligned_cols=90 Identities=17% Similarity=0.071 Sum_probs=70.7
Q ss_pred cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccc---------ccCchhHHHHHHHHHcCCcEEEecceeeec
Q 017664 138 SANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLE---------FVGSRASQIALDWLTSKKVEVILNQSVTLN 208 (368)
Q Consensus 138 ~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~---------~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i 208 (368)
.+++|+|||+|++|+.+|..|.+ .+.+|+++++.+.+.. ..+.++.+...+.+++.||+|++++.+-
T Consensus 305 ~gkkVaVIGsGPAGLsaA~~Lar--~G~~VtVfE~~~~~GG~l~yGIP~~rlp~~vi~~~i~~l~~~Gv~f~~n~~vG-- 380 (944)
T PRK12779 305 VKPPIAVVGSGPSGLINAYLLAV--EGFPVTVFEAFHDLGGVLRYGIPEFRLPNQLIDDVVEKIKLLGGRFVKNFVVG-- 380 (944)
T ss_pred CCCeEEEECCCHHHHHHHHHHHH--CCCeEEEEeeCCCCCceEEccCCCCcChHHHHHHHHHHHHhhcCeEEEeEEec--
Confidence 47999999999999999999995 5899999998765322 2345566777788999999999998652
Q ss_pred ccCCCeEEcCCCcEEecCEEEEccCCC
Q 017664 209 TISDGLIETSSGETIDTDCHFMCTGKA 235 (368)
Q Consensus 209 ~~~~~~v~~~~g~~i~~d~vi~a~G~~ 235 (368)
..+.+++.....+|.||+|||..
T Consensus 381 ----~dit~~~l~~~~yDAV~LAtGA~ 403 (944)
T PRK12779 381 ----KTATLEDLKAAGFWKIFVGTGAG 403 (944)
T ss_pred ----cEEeHHHhccccCCEEEEeCCCC
Confidence 14555555556799999999984
No 221
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=98.03 E-value=2.7e-05 Score=67.97 Aligned_cols=51 Identities=12% Similarity=0.014 Sum_probs=39.1
Q ss_pred HHHHHHHHcCCcEEEecceeeecccCCC-------eEEcCCCcEEecCEEEEccCCCC
Q 017664 186 QIALDWLTSKKVEVILNQSVTLNTISDG-------LIETSSGETIDTDCHFMCTGKAM 236 (368)
Q Consensus 186 ~~~~~~l~~~gv~i~~~~~v~~i~~~~~-------~v~~~~g~~i~~d~vi~a~G~~p 236 (368)
..+.+.++..|-.++++.++..+..++. .+.-..++++++..++-|+|...
T Consensus 200 ls~~edF~~~gg~i~~n~~l~g~~~n~~~~~~Ypivv~ngk~ee~r~~~~vtc~gl~s 257 (453)
T KOG2665|consen 200 LSFGEDFDFMGGRIYTNFRLQGIAQNKEATFSYPIVVLNGKGEEKRTKNVVTCAGLQS 257 (453)
T ss_pred HHHHHHHHHhcccccccceeccchhccCCCCCCceEEecCccceeEEeEEEEeccccH
Confidence 3344558889999999999998877654 33344468999999999999874
No 222
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.03 E-value=4.6e-05 Score=75.78 Aligned_cols=35 Identities=26% Similarity=0.232 Sum_probs=31.5
Q ss_pred CCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCce
Q 017664 16 KKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYF 50 (368)
Q Consensus 16 ~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~ 50 (368)
.+||||||||.|||+||..++ .|.+|+||||....
T Consensus 8 ~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~~~ 43 (626)
T PRK07803 8 SYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLFG 43 (626)
T ss_pred eecEEEECcCHHHHHHHHHHHHCCCCEEEEeccCCC
Confidence 579999999999999999987 59999999998643
No 223
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=98.03 E-value=2e-05 Score=72.95 Aligned_cols=81 Identities=16% Similarity=0.201 Sum_probs=56.7
Q ss_pred hhHHHHHHHHHcC-CcEEEecceeeecccCCC---eEEc-----CCCcEEecCEEEEccCCCCCchhhhccccccccCCC
Q 017664 183 RASQIALDWLTSK-KVEVILNQSVTLNTISDG---LIET-----SSGETIDTDCHFMCTGKAMASSWLRETILKDSLDGR 253 (368)
Q Consensus 183 ~~~~~~~~~l~~~-gv~i~~~~~v~~i~~~~~---~v~~-----~~g~~i~~d~vi~a~G~~p~~~~~~~~~l~~~~~~~ 253 (368)
.+.+.+.+.+++. |++++++++|+.++..++ .|.. .+..++.+++|++..|-. ...+++.++++....-.
T Consensus 182 ~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~dg~W~v~~~~~~~~~~~~v~a~FVfvGAGG~-aL~LLqksgi~e~~gyg 260 (488)
T PF06039_consen 182 ALTRQLVEYLQKQKGFELHLNHEVTDIKRNGDGRWEVKVKDLKTGEKREVRAKFVFVGAGGG-ALPLLQKSGIPEGKGYG 260 (488)
T ss_pred HHHHHHHHHHHhCCCcEEEecCEeCeeEECCCCCEEEEEEecCCCCeEEEECCEEEECCchH-hHHHHHHcCChhhcccC
Confidence 5677777778776 999999999999987654 4443 233589999999999976 56788888764323323
Q ss_pred CcEEeCCCeee
Q 017664 254 GRLMVDENLRV 264 (368)
Q Consensus 254 g~i~vd~~~~~ 264 (368)
|++.--.++++
T Consensus 261 gfPVsG~fl~~ 271 (488)
T PF06039_consen 261 GFPVSGQFLRC 271 (488)
T ss_pred CCcccceEEec
Confidence 44433345555
No 224
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=98.02 E-value=5.4e-05 Score=74.69 Aligned_cols=52 Identities=13% Similarity=0.050 Sum_probs=39.8
Q ss_pred hhHHHHHHHHHcCCcEEEecceeeecccCCCe---EE---cCCCc--EEecCEEEEccCC
Q 017664 183 RASQIALDWLTSKKVEVILNQSVTLNTISDGL---IE---TSSGE--TIDTDCHFMCTGK 234 (368)
Q Consensus 183 ~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~---v~---~~~g~--~i~~d~vi~a~G~ 234 (368)
.+...+.+.+++.||+++.++.++.+..+++. +. ..+|+ .+.++.||+|||-
T Consensus 130 ~i~~~L~~~~~~~gv~i~~~~~v~~L~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGG 189 (566)
T TIGR01812 130 ALLHTLYEQCLKLGVSFFNEYFALDLIHDDGRVRGVVAYDLKTGEIVFFRAKAVVLATGG 189 (566)
T ss_pred HHHHHHHHHHHHcCCEEEeccEEEEEEEeCCEEEEEEEEECCCCcEEEEECCeEEECCCc
Confidence 45667777788889999999999988765552 22 34564 6889999999994
No 225
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=98.01 E-value=3.7e-05 Score=72.87 Aligned_cols=34 Identities=32% Similarity=0.577 Sum_probs=30.2
Q ss_pred CcEEEECCChHHHHHHHHhhc-C-CcEEEEcCCCce
Q 017664 17 KKVVVIGGGVGGSLLAYHIQS-F-ADVVLIDEKEYF 50 (368)
Q Consensus 17 ~~vvIIGaG~aGl~aA~~L~~-g-~~v~lie~~~~~ 50 (368)
.+|+|||||++||++|..|++ | .+|+|+|+.+.+
T Consensus 1 ~~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~ 36 (414)
T TIGR03219 1 LRVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAF 36 (414)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcC
Confidence 379999999999999999985 6 599999998764
No 226
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.01 E-value=2.3e-05 Score=77.09 Aligned_cols=51 Identities=10% Similarity=-0.022 Sum_probs=38.6
Q ss_pred hhHHHHHHHHHcCCcEEEecceeeecccCCC---eEEc---CCCc--EEecCEEEEccC
Q 017664 183 RASQIALDWLTSKKVEVILNQSVTLNTISDG---LIET---SSGE--TIDTDCHFMCTG 233 (368)
Q Consensus 183 ~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~---~v~~---~~g~--~i~~d~vi~a~G 233 (368)
.+...+.+.+++.||++++++.++++..+++ ++.. .+|+ .+.++.||+|||
T Consensus 137 ~i~~~L~~~~~~~gv~i~~~~~~~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATG 195 (566)
T PRK06452 137 ALLHTLFERTSGLNVDFYNEWFSLDLVTDNKKVVGIVAMQMKTLTPFFFKTKAVVLATG 195 (566)
T ss_pred HHHHHHHHHHHhCCCEEEeCcEEEEEEEECCEEEEEEEEECCCCeEEEEEeCeEEECCC
Confidence 4566677777788999999999998876656 3332 2343 678999999999
No 227
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=98.00 E-value=3.4e-05 Score=79.07 Aligned_cols=90 Identities=17% Similarity=0.191 Sum_probs=67.2
Q ss_pred cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccc-------cc--cCchhHHHHHHHHHcCCcEEEecceeeec
Q 017664 138 SANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLL-------EF--VGSRASQIALDWLTSKKVEVILNQSVTLN 208 (368)
Q Consensus 138 ~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l-------~~--~~~~~~~~~~~~l~~~gv~i~~~~~v~~i 208 (368)
.+++|+|||+|++|+.+|..|++ .+.+|+++++.+.+. |. .+.+......+.+++.||++++++.+. +
T Consensus 538 tgKkVaIIGgGPAGLsAA~~Lar--~G~~VtV~Ek~~~~GG~lr~~IP~~Rlp~evL~~die~l~~~GVe~~~gt~Vd-i 614 (1019)
T PRK09853 538 SRKKVAVIGAGPAGLAAAYFLAR--AGHPVTVFEREENAGGVVKNIIPQFRIPAELIQHDIEFVKAHGVKFEFGCSPD-L 614 (1019)
T ss_pred CCCcEEEECCCHHHHHHHHHHHH--cCCeEEEEecccccCcceeeecccccccHHHHHHHHHHHHHcCCEEEeCceeE-E
Confidence 46899999999999999999985 488999999876432 21 233455555678888999999998761 2
Q ss_pred ccCCCeEEcCCCcEEecCEEEEccCCCCC
Q 017664 209 TISDGLIETSSGETIDTDCHFMCTGKAMA 237 (368)
Q Consensus 209 ~~~~~~v~~~~g~~i~~d~vi~a~G~~p~ 237 (368)
..++.+...+|.||+|||..+.
T Consensus 615 -------~le~L~~~gYDaVILATGA~~~ 636 (1019)
T PRK09853 615 -------TVEQLKNEGYDYVVVAIGADKN 636 (1019)
T ss_pred -------EhhhheeccCCEEEECcCCCCC
Confidence 2223345569999999998753
No 228
>PLN02661 Putative thiazole synthesis
Probab=98.00 E-value=0.00015 Score=65.76 Aligned_cols=164 Identities=15% Similarity=0.092 Sum_probs=97.5
Q ss_pred CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccc---------------------------ccCc---------
Q 017664 139 ANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLE---------------------------FVGS--------- 182 (368)
Q Consensus 139 ~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~---------------------------~~~~--------- 182 (368)
.-.|+|||+|.+|+-+|..+.+ .++.+|.+++++..+.. .++.
T Consensus 92 ~~DVlIVGaG~AGl~AA~~La~-~~g~kV~viEk~~~~GGG~~~gg~l~~~~vv~~~a~e~LeElGV~fd~~dgy~vv~h 170 (357)
T PLN02661 92 DTDVVIVGAGSAGLSCAYELSK-NPNVKVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHLFLDELGVPYDEQENYVVIKH 170 (357)
T ss_pred cCCEEEECCHHHHHHHHHHHHH-cCCCeEEEEecCcccccceeeCcccccccccccHHHHHHHHcCCCcccCCCeeEecc
Confidence 4589999999999999999985 35789999998653210 0011
Q ss_pred --hhHHHHHH-HHHcCCcEEEecceeeecccCCC---eEEc------CC---C-----cEEecCEEEEccCCCCCc--h-
Q 017664 183 --RASQIALD-WLTSKKVEVILNQSVTLNTISDG---LIET------SS---G-----ETIDTDCHFMCTGKAMAS--S- 239 (368)
Q Consensus 183 --~~~~~~~~-~l~~~gv~i~~~~~v~~i~~~~~---~v~~------~~---g-----~~i~~d~vi~a~G~~p~~--~- 239 (368)
.+...+.+ .+++.|++++.++.+..+..+++ ++.. .+ + ..++++.||+|||..... .
T Consensus 171 a~e~~stLi~ka~~~~gVkI~~~t~V~DLI~~~grVaGVVvnw~~v~~~~~~~s~~dp~~I~AkaVVlATGh~g~~ga~~ 250 (357)
T PLN02661 171 AALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGDRVGGVVTNWALVAQNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATG 250 (357)
T ss_pred hHHHHHHHHHHHHhcCCCEEEeCeEeeeEEecCCEEEEEEeecchhhhccCCCCccceeEEECCEEEEcCCCCCcchhhh
Confidence 11122333 34457899999999888776555 3332 11 1 268999999999965321 1
Q ss_pred --hhhccccccccCCCC--------cEEeCCCeeecCCCCeEEecccCCC--Cccc---hHHHHHHHHHHHHHHHHHHHc
Q 017664 240 --WLRETILKDSLDGRG--------RLMVDENLRVRGFKNVFAIGDITDI--PEIK---QGYLAQKHALVTAKNLKKLMM 304 (368)
Q Consensus 240 --~~~~~~l~~~~~~~g--------~i~vd~~~~~~~~~~ifa~GD~~~~--~~~~---~~~~a~~~g~~aa~~i~~~l~ 304 (368)
.+...++......-. ...|+.+-+. +|++|++|=.+.. ..+. +--.-.-+|+.+|+-|+..|.
T Consensus 251 ~~~~~~~g~~~~~pg~~~~~~~~~e~~~v~~t~ev--~pgl~~~gm~~~~~~g~~rmgp~fg~m~~sg~k~a~~~~~~l~ 328 (357)
T PLN02661 251 VKRLKSIGMIDSVPGMKALDMNAAEDAIVRLTREV--VPGMIVTGMEVAEIDGSPRMGPTFGAMMISGQKAAHLALKALG 328 (357)
T ss_pred hhcccccCCccCCCCccccchhhHHHHHHhccCcc--cCCEEEeccchhhhcCCCccCchhHhHHhhhHHHHHHHHHHHc
Confidence 111111100000001 1122333343 8999999976542 1111 222346789999999999886
Q ss_pred C
Q 017664 305 G 305 (368)
Q Consensus 305 g 305 (368)
.
T Consensus 329 ~ 329 (357)
T PLN02661 329 L 329 (357)
T ss_pred c
Confidence 3
No 229
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=97.99 E-value=2e-05 Score=75.65 Aligned_cols=89 Identities=21% Similarity=0.235 Sum_probs=67.8
Q ss_pred cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccc-------c--ccCchhHHHHHHHHHcCCcEEEecceeeec
Q 017664 138 SANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLL-------E--FVGSRASQIALDWLTSKKVEVILNQSVTLN 208 (368)
Q Consensus 138 ~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l-------~--~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i 208 (368)
.+++++|||+|+.|+.+|..|.+ .+.+|+++++.+.+. + ..+.++.....+.+++.|+++++++.+..
T Consensus 139 ~~~~VvIIGgGpaGl~aA~~l~~--~g~~V~lie~~~~~gG~l~~gip~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~- 215 (457)
T PRK11749 139 TGKKVAVIGAGPAGLTAAHRLAR--KGYDVTIFEARDKAGGLLRYGIPEFRLPKDIVDREVERLLKLGVEIRTNTEVGR- 215 (457)
T ss_pred CCCcEEEECCCHHHHHHHHHHHh--CCCeEEEEccCCCCCcEeeccCCCccCCHHHHHHHHHHHHHcCCEEEeCCEECC-
Confidence 46899999999999999999985 478999999876542 1 13446667777888999999999987621
Q ss_pred ccCCCeEEcCCCcEEecCEEEEccCCC
Q 017664 209 TISDGLIETSSGETIDTDCHFMCTGKA 235 (368)
Q Consensus 209 ~~~~~~v~~~~g~~i~~d~vi~a~G~~ 235 (368)
.+.+++. .+.+|.+|+|||..
T Consensus 216 -----~v~~~~~-~~~~d~vvlAtGa~ 236 (457)
T PRK11749 216 -----DITLDEL-RAGYDAVFIGTGAG 236 (457)
T ss_pred -----ccCHHHH-HhhCCEEEEccCCC
Confidence 1222233 37899999999985
No 230
>PLN02576 protoporphyrinogen oxidase
Probab=97.99 E-value=8.1e-06 Score=79.28 Aligned_cols=45 Identities=22% Similarity=0.372 Sum_probs=38.3
Q ss_pred CcCCCCCCcEEEECCChHHHHHHHHhh-c-CCcEEEEcCCCceeeec
Q 017664 10 AAGLVEKKKVVVIGGGVGGSLLAYHIQ-S-FADVVLIDEKEYFEITW 54 (368)
Q Consensus 10 ~~~~~~~~~vvIIGaG~aGl~aA~~L~-~-g~~v~lie~~~~~~~~~ 54 (368)
.+.....+||+|||||++||+||++|+ . |.+|+|+|+++.+|+..
T Consensus 6 ~~~~~~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGGr~ 52 (496)
T PLN02576 6 GSAAASSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGGNI 52 (496)
T ss_pred cccccCCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCCce
Confidence 344555679999999999999999997 4 89999999999988653
No 231
>PLN02268 probable polyamine oxidase
Probab=97.97 E-value=7.1e-06 Score=78.31 Aligned_cols=39 Identities=26% Similarity=0.409 Sum_probs=35.2
Q ss_pred CcEEEECCChHHHHHHHHhhc-CCcEEEEcCCCceeeecc
Q 017664 17 KKVVVIGGGVGGSLLAYHIQS-FADVVLIDEKEYFEITWA 55 (368)
Q Consensus 17 ~~vvIIGaG~aGl~aA~~L~~-g~~v~lie~~~~~~~~~~ 55 (368)
++|+|||||.|||+||+.|++ |++|+|+|+++.+|+...
T Consensus 1 ~~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~GGri~ 40 (435)
T PLN02268 1 PSVIVIGGGIAGIAAARALHDASFKVTLLESRDRIGGRVH 40 (435)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCceee
Confidence 479999999999999999985 999999999999987643
No 232
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=97.97 E-value=4.5e-06 Score=78.12 Aligned_cols=45 Identities=20% Similarity=0.268 Sum_probs=37.7
Q ss_pred CCeeecCCCCeEEecccCCCCccchHHHHHHHHHHHHHHHHHHHcCCC
Q 017664 260 ENLRVRGFKNVFAIGDITDIPEIKQGYLAQKHALVTAKNLKKLMMGRN 307 (368)
Q Consensus 260 ~~~~~~~~~~ifa~GD~~~~~~~~~~~~a~~~g~~aa~~i~~~l~g~~ 307 (368)
+.|+++..+|+|.+|-+.+... -..|..||-+|+-|.+....+++
T Consensus 352 ~tLEtK~I~GLf~AGQINGTtG---YEEAAaQGliAGiNAal~~~~~~ 396 (621)
T COG0445 352 PTLETKKIKGLFFAGQINGTTG---YEEAAAQGLIAGINAALKVQGKE 396 (621)
T ss_pred cchhhceecceEEcccccCCch---hHHHHhhhHHHHHHHHHHhcCCC
Confidence 4688888999999999987632 24799999999999998888875
No 233
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.96 E-value=2.8e-05 Score=74.25 Aligned_cols=97 Identities=19% Similarity=0.263 Sum_probs=62.1
Q ss_pred CCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeeccceeeeecccccccceeecccccCceeEEEe-EEEEeecc
Q 017664 16 KKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITWASLRAVVEPSFAVRSVINHGDYLSNVKIVVS-TAVSITDT 93 (368)
Q Consensus 16 ~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 93 (368)
..+++|||||+.|+.+|..|+ .|.+|+++++.+.+.... .+...........+ .+++++.. .+..++..
T Consensus 157 ~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~-------~~~~~~~~~~~l~~--~GI~i~~~~~V~~i~~~ 227 (438)
T PRK07251 157 PERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTILPRE-------EPSVAALAKQYMEE--DGITFLLNAHTTEVKND 227 (438)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccCCCC-------CHHHHHHHHHHHHH--cCCEEEcCCEEEEEEec
Confidence 468999999999999999987 499999999987652110 11111000000111 25665543 45555432
Q ss_pred --E-EEecCCeEEEecEEEEecCCCCCCCCc
Q 017664 94 --E-VVTAGGQTFVYDYVVVATGHVESVPKS 121 (368)
Q Consensus 94 --~-v~~~~g~~~~~d~lvlAtG~~~~~p~~ 121 (368)
. +...++.++++|.+++|+|..|..+..
T Consensus 228 ~~~v~v~~~g~~i~~D~viva~G~~p~~~~l 258 (438)
T PRK07251 228 GDQVLVVTEDETYRFDALLYATGRKPNTEPL 258 (438)
T ss_pred CCEEEEEECCeEEEcCEEEEeeCCCCCcccC
Confidence 2 233456789999999999999887653
No 234
>PRK06185 hypothetical protein; Provisional
Probab=97.94 E-value=9.5e-06 Score=76.71 Aligned_cols=37 Identities=24% Similarity=0.469 Sum_probs=32.7
Q ss_pred CCCCCcEEEECCChHHHHHHHHhhc-CCcEEEEcCCCc
Q 017664 13 LVEKKKVVVIGGGVGGSLLAYHIQS-FADVVLIDEKEY 49 (368)
Q Consensus 13 ~~~~~~vvIIGaG~aGl~aA~~L~~-g~~v~lie~~~~ 49 (368)
+...+||+|||||++|+++|..|++ |.+|+|+|+.+.
T Consensus 3 ~~~~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~ 40 (407)
T PRK06185 3 EVETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHAD 40 (407)
T ss_pred ccccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence 3457899999999999999999984 999999999853
No 235
>PLN02852 ferredoxin-NADP+ reductase
Probab=97.94 E-value=3.2e-05 Score=73.92 Aligned_cols=92 Identities=16% Similarity=0.119 Sum_probs=66.2
Q ss_pred cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccc--------cc--CchhHHHHHHHHHcCCcEEEecceeee
Q 017664 138 SANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLE--------FV--GSRASQIALDWLTSKKVEVILNQSVTL 207 (368)
Q Consensus 138 ~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~--------~~--~~~~~~~~~~~l~~~gv~i~~~~~v~~ 207 (368)
..++|+|||+|++|+.+|..|.++..+.+|+++++.+.+.. .. ...+...+.+.+++.+++++.+..+-.
T Consensus 25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGlvr~gvaP~~~~~k~v~~~~~~~~~~~~v~~~~nv~vg~ 104 (491)
T PLN02852 25 EPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGLVRSGVAPDHPETKNVTNQFSRVATDDRVSFFGNVTLGR 104 (491)
T ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcceEeeccCCCcchhHHHHHHHHHHHHHCCeEEEcCEEECc
Confidence 46899999999999999999985456899999999876431 11 112334556677888999998776521
Q ss_pred cccCCCeEEcCCCcEEecCEEEEccCCCC
Q 017664 208 NTISDGLIETSSGETIDTDCHFMCTGKAM 236 (368)
Q Consensus 208 i~~~~~~v~~~~g~~i~~d~vi~a~G~~p 236 (368)
.+.+++- ...+|.||+|+|..+
T Consensus 105 ------dvtl~~L-~~~yDaVIlAtGa~~ 126 (491)
T PLN02852 105 ------DVSLSEL-RDLYHVVVLAYGAES 126 (491)
T ss_pred ------cccHHHH-hhhCCEEEEecCCCC
Confidence 2233332 246999999999875
No 236
>PRK07236 hypothetical protein; Provisional
Probab=97.92 E-value=7.4e-05 Score=70.15 Aligned_cols=96 Identities=14% Similarity=0.089 Sum_probs=68.3
Q ss_pred CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccc------cCchhHHH-------------------------
Q 017664 139 ANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEF------VGSRASQI------------------------- 187 (368)
Q Consensus 139 ~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~------~~~~~~~~------------------------- 187 (368)
..+|+|||+|++|+.+|..|.+ .+.+|+++++.+..... +.+...+.
T Consensus 6 ~~~ViIVGaG~aGl~~A~~L~~--~G~~v~v~E~~~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~ 83 (386)
T PRK07236 6 GPRAVVIGGSLGGLFAALLLRR--AGWDVDVFERSPTELDGRGAGIVLQPELLRALAEAGVALPADIGVPSRERIYLDRD 83 (386)
T ss_pred CCeEEEECCCHHHHHHHHHHHh--CCCCEEEEecCCCCcCCCCceeEeCHHHHHHHHHcCCCcccccccCccceEEEeCC
Confidence 5789999999999999999985 58999999987643211 11111111
Q ss_pred ------------------HHHHHHc--CCcEEEecceeeecccCCC--eEEcCCCcEEecCEEEEccCCCC
Q 017664 188 ------------------ALDWLTS--KKVEVILNQSVTLNTISDG--LIETSSGETIDTDCHFMCTGKAM 236 (368)
Q Consensus 188 ------------------~~~~l~~--~gv~i~~~~~v~~i~~~~~--~v~~~~g~~i~~d~vi~a~G~~p 236 (368)
+.+.|.+ .+++++.+++++.++.+++ .+.+.+|+++.+|+||.|-|...
T Consensus 84 g~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vIgADG~~S 154 (386)
T PRK07236 84 GRVVQRRPMPQTQTSWNVLYRALRAAFPAERYHLGETLVGFEQDGDRVTARFADGRRETADLLVGADGGRS 154 (386)
T ss_pred CCEeeccCCCccccCHHHHHHHHHHhCCCcEEEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCCc
Confidence 1111211 2356889999998877655 67788999999999999988653
No 237
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=97.92 E-value=1.1e-05 Score=75.84 Aligned_cols=34 Identities=29% Similarity=0.488 Sum_probs=31.2
Q ss_pred CCcEEEECCChHHHHHHHHhhc-CCcEEEEcCCCc
Q 017664 16 KKKVVVIGGGVGGSLLAYHIQS-FADVVLIDEKEY 49 (368)
Q Consensus 16 ~~~vvIIGaG~aGl~aA~~L~~-g~~v~lie~~~~ 49 (368)
.+||+||||||+|+++|..|++ |++|+|+|+.+.
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~ 36 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSR 36 (390)
T ss_pred CceEEEECccHHHHHHHHHHHHCCCCEEEEECCCC
Confidence 4799999999999999999985 999999999874
No 238
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=97.91 E-value=8.9e-06 Score=77.27 Aligned_cols=35 Identities=34% Similarity=0.489 Sum_probs=28.2
Q ss_pred cEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceee
Q 017664 18 KVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEI 52 (368)
Q Consensus 18 ~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~ 52 (368)
|||||||||||++||..++ .|.+|+|||+.+.+|+
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG 36 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGG 36 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTG
T ss_pred CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCC
Confidence 8999999999999999887 4999999999998764
No 239
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=97.91 E-value=1.1e-05 Score=77.51 Aligned_cols=39 Identities=31% Similarity=0.543 Sum_probs=34.9
Q ss_pred CCcEEEECCChHHHHHHHHhh-c----CCcEEEEcCCCceeeec
Q 017664 16 KKKVVVIGGGVGGSLLAYHIQ-S----FADVVLIDEKEYFEITW 54 (368)
Q Consensus 16 ~~~vvIIGaG~aGl~aA~~L~-~----g~~v~lie~~~~~~~~~ 54 (368)
++||+|||||++||+||++|+ + |++|+|+|+++.+|+..
T Consensus 2 ~~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG~~ 45 (462)
T TIGR00562 2 KKHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGKI 45 (462)
T ss_pred CceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcceE
Confidence 468999999999999999997 4 89999999999988653
No 240
>PLN02568 polyamine oxidase
Probab=97.90 E-value=1.4e-05 Score=77.73 Aligned_cols=43 Identities=16% Similarity=0.338 Sum_probs=37.1
Q ss_pred CCCCCcEEEECCChHHHHHHHHhhc-C-----CcEEEEcCCCceeeecc
Q 017664 13 LVEKKKVVVIGGGVGGSLLAYHIQS-F-----ADVVLIDEKEYFEITWA 55 (368)
Q Consensus 13 ~~~~~~vvIIGaG~aGl~aA~~L~~-g-----~~v~lie~~~~~~~~~~ 55 (368)
|++.+||+|||||++||+||++|++ | ++|+|+|+++..|+...
T Consensus 2 ~~~~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~GGr~~ 50 (539)
T PLN02568 2 VAKKPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIGGRIN 50 (539)
T ss_pred CCCCCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcCCeEE
Confidence 4566899999999999999999984 5 89999999999886543
No 241
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=97.90 E-value=0.00011 Score=67.74 Aligned_cols=91 Identities=31% Similarity=0.435 Sum_probs=64.5
Q ss_pred eEEEEcCchhHHHHHHHHhhhCCCCeEEEEecC-ccc-----------------------------------------c-
Q 017664 141 SVLIVGGGPTGVELAGEIAVDFPDKKVILVHRG-PKL-----------------------------------------L- 177 (368)
Q Consensus 141 ~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~-~~~-----------------------------------------l- 177 (368)
.|+|||+|..|+|+|..+++ .|.+|.++... +.+ +
T Consensus 1 DViVVGgG~AG~eAA~aaAr--~G~~V~Lit~~~d~i~~~~Cnpsigg~~kg~L~~Eidalgg~m~~~aD~~~i~~~~lN 78 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAAR--MGAKVLLITHNTDTIGEMSCNPSIGGIAKGHLVREIDALGGLMGRAADETGIHFRMLN 78 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHH--TT--EEEEES-GGGTT--SSSSEEESTTHHHHHHHHHHTT-SHHHHHHHHEEEEEEES
T ss_pred CEEEECCCHHHHHHHHHHHH--CCCCEEEEeecccccccccchhhhccccccchhHHHhhhhhHHHHHHhHhhhhhhccc
Confidence 48999999999999999995 58899998432 211 0
Q ss_pred ----cc-------cCc-hhHHHHHHHHHc-CCcEEEecceeeecccCCC---eEEcCCCcEEecCEEEEccCC
Q 017664 178 ----EF-------VGS-RASQIALDWLTS-KKVEVILNQSVTLNTISDG---LIETSSGETIDTDCHFMCTGK 234 (368)
Q Consensus 178 ----~~-------~~~-~~~~~~~~~l~~-~gv~i~~~~~v~~i~~~~~---~v~~~~g~~i~~d~vi~a~G~ 234 (368)
|. .|. .+...+++.+++ .+++++ ...|..+..+++ +|.+.+|+++.+|.||+|||.
T Consensus 79 ~skGpav~a~r~qvDr~~y~~~~~~~l~~~~nl~i~-~~~V~~l~~e~~~v~GV~~~~g~~~~a~~vVlaTGt 150 (392)
T PF01134_consen 79 RSKGPAVHALRAQVDRDKYSRAMREKLESHPNLTII-QGEVTDLIVENGKVKGVVTKDGEEIEADAVVLATGT 150 (392)
T ss_dssp TTS-GGCTEEEEEE-HHHHHHHHHHHHHTSTTEEEE-ES-EEEEEECTTEEEEEEETTSEEEEECEEEE-TTT
T ss_pred ccCCCCccchHhhccHHHHHHHHHHHHhcCCCeEEE-EcccceEEecCCeEEEEEeCCCCEEecCEEEEeccc
Confidence 10 111 233445667776 789997 467888877766 789999999999999999998
No 242
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=97.89 E-value=4.7e-05 Score=73.27 Aligned_cols=96 Identities=23% Similarity=0.276 Sum_probs=61.6
Q ss_pred CCcEEEECCChHHHHHHHHhhc-CCcEEEEcCCCceeeeccceeeeecccccccceeecccccCceeEEEe-EEEEee--
Q 017664 16 KKKVVVIGGGVGGSLLAYHIQS-FADVVLIDEKEYFEITWASLRAVVEPSFAVRSVINHGDYLSNVKIVVS-TAVSIT-- 91 (368)
Q Consensus 16 ~~~vvIIGaG~aGl~aA~~L~~-g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-- 91 (368)
..+++|||||+.|+.+|..|++ |.+|+++|+.+.+... ..+...........+ .+++++.. .+..++
T Consensus 170 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~-------~~~~~~~~~~~~l~~--~gi~i~~~~~v~~i~~~ 240 (461)
T TIGR01350 170 PESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRILPG-------EDAEVSKVVAKALKK--KGVKILTNTKVTAVEKN 240 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCCCCC-------CCHHHHHHHHHHHHH--cCCEEEeCCEEEEEEEe
Confidence 4689999999999999999974 9999999998764311 111111000000111 25665543 444443
Q ss_pred cc--EEEecCC--eEEEecEEEEecCCCCCCCC
Q 017664 92 DT--EVVTAGG--QTFVYDYVVVATGHVESVPK 120 (368)
Q Consensus 92 ~~--~v~~~~g--~~~~~d~lvlAtG~~~~~p~ 120 (368)
.+ .+.+.++ ..+++|.+++|+|..|..+.
T Consensus 241 ~~~v~v~~~~g~~~~i~~D~vi~a~G~~p~~~~ 273 (461)
T TIGR01350 241 DDQVVYENKGGETETLTGEKVLVAVGRKPNTEG 273 (461)
T ss_pred CCEEEEEEeCCcEEEEEeCEEEEecCCcccCCC
Confidence 22 2344455 57999999999999998774
No 243
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=97.88 E-value=3.4e-05 Score=73.80 Aligned_cols=91 Identities=20% Similarity=0.171 Sum_probs=67.3
Q ss_pred cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccc-------c--ccCchhHHHHHHHHHcCCcEEEecceeeec
Q 017664 138 SANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLL-------E--FVGSRASQIALDWLTSKKVEVILNQSVTLN 208 (368)
Q Consensus 138 ~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l-------~--~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i 208 (368)
..++++|||+|+.|+.+|..|.+ .+.+|+++++.+.+. + ..+.++.....+.+++.||++++++.+.
T Consensus 132 ~~~~V~IIG~G~aGl~aA~~l~~--~G~~V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~-- 207 (449)
T TIGR01316 132 THKKVAVIGAGPAGLACASELAK--AGHSVTVFEALHKPGGVVTYGIPEFRLPKEIVVTEIKTLKKLGVTFRMNFLVG-- 207 (449)
T ss_pred CCCEEEEECcCHHHHHHHHHHHH--CCCcEEEEecCCCCCcEeeecCCCccCCHHHHHHHHHHHHhCCcEEEeCCccC--
Confidence 36799999999999999999985 588999999876431 1 1344566666778889999999998542
Q ss_pred ccCCCeEEcCCCcEEecCEEEEccCC-CCC
Q 017664 209 TISDGLIETSSGETIDTDCHFMCTGK-AMA 237 (368)
Q Consensus 209 ~~~~~~v~~~~g~~i~~d~vi~a~G~-~p~ 237 (368)
..+.+.+. ..++|.+|+|||. .|.
T Consensus 208 ----~~v~~~~~-~~~yd~viiAtGa~~p~ 232 (449)
T TIGR01316 208 ----KTATLEEL-FSQYDAVFIGTGAGLPK 232 (449)
T ss_pred ----CcCCHHHH-HhhCCEEEEeCCCCCCC
Confidence 12333333 3569999999997 454
No 244
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=97.87 E-value=2.8e-05 Score=74.03 Aligned_cols=96 Identities=22% Similarity=0.253 Sum_probs=61.7
Q ss_pred CCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeeccceeeeecccccccceeecccccCceeEEE-eEEEEeecc
Q 017664 16 KKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITWASLRAVVEPSFAVRSVINHGDYLSNVKIVV-STAVSITDT 93 (368)
Q Consensus 16 ~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 93 (368)
..+++|||+|+.|+.+|..|+ .|.+|+++++.+.+... ...+...........+ .+++++. ..+..++..
T Consensus 137 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~~~~------~~~~~~~~~~~~~l~~--~gV~v~~~~~v~~i~~~ 208 (427)
T TIGR03385 137 VENVVIIGGGYIGIEMAEALRERGKNVTLIHRSERILNK------LFDEEMNQIVEEELKK--HEINLRLNEEVDSIEGE 208 (427)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccCcc------ccCHHHHHHHHHHHHH--cCCEEEeCCEEEEEecC
Confidence 468999999999999999988 48999999998764210 0011110000000111 2566653 345555533
Q ss_pred --EEEecCCeEEEecEEEEecCCCCCCC
Q 017664 94 --EVVTAGGQTFVYDYVVVATGHVESVP 119 (368)
Q Consensus 94 --~v~~~~g~~~~~d~lvlAtG~~~~~p 119 (368)
.+...++..+++|.+++|+|..|..+
T Consensus 209 ~~~v~~~~g~~i~~D~vi~a~G~~p~~~ 236 (427)
T TIGR03385 209 ERVKVFTSGGVYQADMVILATGIKPNSE 236 (427)
T ss_pred CCEEEEcCCCEEEeCEEEECCCccCCHH
Confidence 23556788899999999999997653
No 245
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=97.87 E-value=1.3e-05 Score=75.40 Aligned_cols=33 Identities=27% Similarity=0.419 Sum_probs=30.1
Q ss_pred CcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCc
Q 017664 17 KKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEY 49 (368)
Q Consensus 17 ~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~ 49 (368)
+||+||||||||++||+.|+ +|++|+|+|+...
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~ 34 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKPD 34 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCCC
Confidence 58999999999999999998 4999999998754
No 246
>PRK11445 putative oxidoreductase; Provisional
Probab=97.87 E-value=1.4e-05 Score=73.91 Aligned_cols=34 Identities=35% Similarity=0.432 Sum_probs=30.6
Q ss_pred CCcEEEECCChHHHHHHHHhhcCCcEEEEcCCCc
Q 017664 16 KKKVVVIGGGVGGSLLAYHIQSFADVVLIDEKEY 49 (368)
Q Consensus 16 ~~~vvIIGaG~aGl~aA~~L~~g~~v~lie~~~~ 49 (368)
++||+||||||||+++|..|++.++|+|+|+.+.
T Consensus 1 ~~dV~IvGaGpaGl~~A~~La~~~~V~liE~~~~ 34 (351)
T PRK11445 1 HYDVAIIGLGPAGSALARLLAGKMKVIAIDKKHQ 34 (351)
T ss_pred CceEEEECCCHHHHHHHHHHhccCCEEEEECCCc
Confidence 4799999999999999999985599999998874
No 247
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=97.87 E-value=4.3e-05 Score=70.73 Aligned_cols=96 Identities=18% Similarity=0.185 Sum_probs=66.6
Q ss_pred cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccc---------cCchhHHHHHHHHHcCCcEEEecceeeec
Q 017664 138 SANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEF---------VGSRASQIALDWLTSKKVEVILNQSVTLN 208 (368)
Q Consensus 138 ~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~---------~~~~~~~~~~~~l~~~gv~i~~~~~v~~i 208 (368)
.+++++|||+|++|+++|..|.+ .+.+|+++++.+.+... .+.+......+.+.+.|++++.++.+..+
T Consensus 17 ~~~~VvIIG~G~aGl~aA~~l~~--~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~v~~~ 94 (352)
T PRK12770 17 TGKKVAIIGAGPAGLAAAGYLAC--LGYEVHVYDKLPEPGGLMLFGIPEFRIPIERVREGVKELEEAGVVFHTRTKVCCG 94 (352)
T ss_pred CCCEEEEECcCHHHHHHHHHHHH--CCCcEEEEeCCCCCCceeeecCcccccCHHHHHHHHHHHHhCCeEEecCcEEeec
Confidence 47899999999999999999985 58899999988765321 12233344556677779999999888654
Q ss_pred cc----CCCeE--Ec--CCCcEEecCEEEEccCCC
Q 017664 209 TI----SDGLI--ET--SSGETIDTDCHFMCTGKA 235 (368)
Q Consensus 209 ~~----~~~~v--~~--~~g~~i~~d~vi~a~G~~ 235 (368)
.. +++.. .. .++..+++|.+|+|||..
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtGs~ 129 (352)
T PRK12770 95 EPLHEEEGDEFVERIVSLEELVKKYDAVLIATGTW 129 (352)
T ss_pred cccccccccccccccCCHHHHHhhCCEEEEEeCCC
Confidence 32 11111 11 111247899999999983
No 248
>PLN02463 lycopene beta cyclase
Probab=97.87 E-value=0.00011 Score=70.01 Aligned_cols=94 Identities=18% Similarity=0.287 Sum_probs=69.3
Q ss_pred CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccc-cc--------c------------------------------
Q 017664 140 NSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLL-EF--------V------------------------------ 180 (368)
Q Consensus 140 ~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l-~~--------~------------------------------ 180 (368)
-.|+|||+|++|+-+|..+.+ .+.+|.++++.+... +. +
T Consensus 29 ~DVvIVGaGpAGLalA~~La~--~Gl~V~liE~~~~~~~p~~~g~w~~~l~~lgl~~~l~~~w~~~~v~~~~~~~~~~~~ 106 (447)
T PLN02463 29 VDLVVVGGGPAGLAVAQQVSE--AGLSVCCIDPSPLSIWPNNYGVWVDEFEALGLLDCLDTTWPGAVVYIDDGKKKDLDR 106 (447)
T ss_pred ceEEEECCCHHHHHHHHHHHH--CCCeEEEeccCccchhccccchHHHHHHHCCcHHHHHhhCCCcEEEEeCCCCccccC
Confidence 479999999999999999885 488999998754211 00 0
Q ss_pred ------CchhHHHHHHHHHcCCcEEEecceeeecccCCC--eEEcCCCcEEecCEEEEccCCCC
Q 017664 181 ------GSRASQIALDWLTSKKVEVILNQSVTLNTISDG--LIETSSGETIDTDCHFMCTGKAM 236 (368)
Q Consensus 181 ------~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~--~v~~~~g~~i~~d~vi~a~G~~p 236 (368)
...+.+.+.+.+.+.|++++ ..+|.+++.+++ .|.+++|+++++|.||.|+|..+
T Consensus 107 ~y~~V~R~~L~~~Ll~~~~~~GV~~~-~~~V~~I~~~~~~~~V~~~dG~~i~A~lVI~AdG~~s 169 (447)
T PLN02463 107 PYGRVNRKKLKSKMLERCIANGVQFH-QAKVKKVVHEESKSLVVCDDGVKIQASLVLDATGFSR 169 (447)
T ss_pred cceeEEHHHHHHHHHHHHhhcCCEEE-eeEEEEEEEcCCeEEEEECCCCEEEcCEEEECcCCCc
Confidence 01122445566677899997 467888876655 68888998999999999999764
No 249
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.86 E-value=5e-05 Score=73.06 Aligned_cols=96 Identities=25% Similarity=0.278 Sum_probs=61.9
Q ss_pred CCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeeccceeeeecccccccceeecccccCceeEEEe-EEEEeecc
Q 017664 16 KKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITWASLRAVVEPSFAVRSVINHGDYLSNVKIVVS-TAVSITDT 93 (368)
Q Consensus 16 ~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 93 (368)
..+++|||||+.|+.+|..|+ .|.+|+++++.+.+... ..+........... ..+++++.. .+..++..
T Consensus 172 ~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~-------~~~~~~~~l~~~l~--~~gV~i~~~~~V~~i~~~ 242 (462)
T PRK06416 172 PKSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRILPG-------EDKEISKLAERALK--KRGIKIKTGAKAKKVEQT 242 (462)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcCCc-------CCHHHHHHHHHHHH--HcCCEEEeCCEEEEEEEe
Confidence 468999999999999999987 59999999998765211 11111110000011 125666544 45555432
Q ss_pred ----EEEecCC---eEEEecEEEEecCCCCCCCC
Q 017664 94 ----EVVTAGG---QTFVYDYVVVATGHVESVPK 120 (368)
Q Consensus 94 ----~v~~~~g---~~~~~d~lvlAtG~~~~~p~ 120 (368)
.+.+.++ +.+++|.+++|+|..|....
T Consensus 243 ~~~v~v~~~~gg~~~~i~~D~vi~a~G~~p~~~~ 276 (462)
T PRK06416 243 DDGVTVTLEDGGKEETLEADYVLVAVGRRPNTEN 276 (462)
T ss_pred CCEEEEEEEeCCeeEEEEeCEEEEeeCCccCCCC
Confidence 2344455 67999999999999987654
No 250
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=97.85 E-value=6.6e-05 Score=72.43 Aligned_cols=97 Identities=22% Similarity=0.277 Sum_probs=61.1
Q ss_pred CCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeeccceeeeecccccccceeecccccCceeEEEe-EEEEee--
Q 017664 16 KKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITWASLRAVVEPSFAVRSVINHGDYLSNVKIVVS-TAVSIT-- 91 (368)
Q Consensus 16 ~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-- 91 (368)
..+++|||||++|+.+|..|+ .|.+|+|+|+++.+... ..+...........+ .+++++.. .+..++
T Consensus 180 ~~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~il~~-------~~~~~~~~l~~~l~~--~gI~i~~~~~v~~i~~~ 250 (472)
T PRK05976 180 PKSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRILPT-------EDAELSKEVARLLKK--LGVRVVTGAKVLGLTLK 250 (472)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccCCc-------CCHHHHHHHHHHHHh--cCCEEEeCcEEEEEEEe
Confidence 468999999999999999998 49999999998754211 011111100001111 25665543 344443
Q ss_pred -cc---EEEecCC--eEEEecEEEEecCCCCCCCCc
Q 017664 92 -DT---EVVTAGG--QTFVYDYVVVATGHVESVPKS 121 (368)
Q Consensus 92 -~~---~v~~~~g--~~~~~d~lvlAtG~~~~~p~~ 121 (368)
.. .+.+.++ ..+++|.+++|+|..|..+.+
T Consensus 251 ~~~~~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l 286 (472)
T PRK05976 251 KDGGVLIVAEHNGEEKTLEADKVLVSVGRRPNTEGI 286 (472)
T ss_pred cCCCEEEEEEeCCceEEEEeCEEEEeeCCccCCCCC
Confidence 22 1223455 468999999999999987654
No 251
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=97.85 E-value=0.00032 Score=58.44 Aligned_cols=162 Identities=18% Similarity=0.157 Sum_probs=99.6
Q ss_pred CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccc-------c-------------------------------
Q 017664 139 ANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEF-------V------------------------------- 180 (368)
Q Consensus 139 ~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~-------~------------------------------- 180 (368)
...|+|+|+|++|+-+|.+|++ .+.+|.+++++-.+... +
T Consensus 30 esDViIVGaGPsGLtAAyyLAk--~g~kV~i~E~~ls~GGG~w~GGmlf~~iVv~~~a~~iL~e~gI~ye~~e~g~~v~d 107 (262)
T COG1635 30 ESDVIIVGAGPSGLTAAYYLAK--AGLKVAIFERKLSFGGGIWGGGMLFNKIVVREEADEILDEFGIRYEEEEDGYYVAD 107 (262)
T ss_pred hccEEEECcCcchHHHHHHHHh--CCceEEEEEeecccCCcccccccccceeeecchHHHHHHHhCCcceecCCceEEec
Confidence 4579999999999999999996 48999999987543110 0
Q ss_pred CchhHHHHHHHHHcCCcEEEecceeeecccCCC----eEEcC-----------CCcEEecCEEEEccCCCCC-chhhhcc
Q 017664 181 GSRASQIALDWLTSKKVEVILNQSVTLNTISDG----LIETS-----------SGETIDTDCHFMCTGKAMA-SSWLRET 244 (368)
Q Consensus 181 ~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~----~v~~~-----------~g~~i~~d~vi~a~G~~p~-~~~~~~~ 244 (368)
+..+...+....-+.|.+++..+.+..+...++ ++..+ |--.+++++|+-+||.... ..++...
T Consensus 108 s~e~~skl~~~a~~aGaki~n~~~veDvi~r~~~rVaGvVvNWt~V~~~~lhvDPl~i~a~~VvDaTGHda~v~~~~~kr 187 (262)
T COG1635 108 SAEFASKLAARALDAGAKIFNGVSVEDVIVRDDPRVAGVVVNWTPVQMAGLHVDPLTIRAKAVVDATGHDAEVVSFLAKR 187 (262)
T ss_pred HHHHHHHHHHHHHhcCceeeecceEEEEEEecCCceEEEEEecchhhhcccccCcceeeEEEEEeCCCCchHHHHHHHHh
Confidence 112233344455567899999999887765544 22221 1137999999999997643 2333322
Q ss_pred c--cccccCCC--------CcEEeCCCeeecCCCCeEEecccCCC--Cccc---hHHHHHHHHHHHHHHHHHHHc
Q 017664 245 I--LKDSLDGR--------GRLMVDENLRVRGFKNVFAIGDITDI--PEIK---QGYLAQKHALVTAKNLKKLMM 304 (368)
Q Consensus 245 ~--l~~~~~~~--------g~i~vd~~~~~~~~~~ifa~GD~~~~--~~~~---~~~~a~~~g~~aa~~i~~~l~ 304 (368)
. ++..+-.. -.+.|+.+.+. +||+|++|=.+.. ..+. .----.-+|+.+|+.|...|.
T Consensus 188 ~~~l~~~~~Ge~~mw~e~~E~lvV~~T~eV--~pgL~vaGMa~~av~G~pRMGPiFGgMllSGkkaAe~i~e~L~ 260 (262)
T COG1635 188 IPELGIEVPGEKSMWAERGEDLVVENTGEV--YPGLYVAGMAVNAVHGLPRMGPIFGGMLLSGKKAAEEILEKLK 260 (262)
T ss_pred ccccccccCCCcchhhhHHHHHHHhccccc--cCCeEeehhhHHhhcCCcccCchhhhhhhchHHHHHHHHHHhh
Confidence 2 11111111 11334444444 8999999986532 1111 112345678889988887764
No 252
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=97.85 E-value=1.7e-05 Score=73.42 Aligned_cols=38 Identities=16% Similarity=0.331 Sum_probs=33.9
Q ss_pred CCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeee
Q 017664 16 KKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEIT 53 (368)
Q Consensus 16 ~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~ 53 (368)
++|++|||||++|+++|.+|+ .|.+|+|+|+++..|+.
T Consensus 1 ~~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~iGG~ 39 (377)
T TIGR00031 1 MFDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIGGN 39 (377)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCc
Confidence 369999999999999999998 49999999999887753
No 253
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=97.84 E-value=1.8e-05 Score=74.15 Aligned_cols=43 Identities=28% Similarity=0.407 Sum_probs=37.4
Q ss_pred CcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeeccceee
Q 017664 17 KKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITWASLRA 59 (368)
Q Consensus 17 ~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~~~~~~ 59 (368)
++|+|+|||.|||+||+.|. +|++|+|+|.++..|+....++.
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GGk~~s~~~ 44 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGGKVASWRD 44 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCceEEEeccCccCceeeeeec
Confidence 47999999999999999998 69999999999999876554443
No 254
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=97.83 E-value=0.00029 Score=62.40 Aligned_cols=41 Identities=27% Similarity=0.463 Sum_probs=34.4
Q ss_pred CCCcEEEECCChHHHHHHHHhh-----cCCcEEEEcCCCceeeecc
Q 017664 15 EKKKVVVIGGGVGGSLLAYHIQ-----SFADVVLIDEKEYFEITWA 55 (368)
Q Consensus 15 ~~~~vvIIGaG~aGl~aA~~L~-----~g~~v~lie~~~~~~~~~~ 55 (368)
.+.||+|||||-.|.+.|+.|+ .|.+|+|+|+++.+.-..+
T Consensus 85 ~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddtytqssT 130 (509)
T KOG2853|consen 85 YHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTYTQSST 130 (509)
T ss_pred cccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCcccccce
Confidence 3679999999999999999886 2799999999998754433
No 255
>PRK06126 hypothetical protein; Provisional
Probab=97.83 E-value=2.1e-05 Score=77.34 Aligned_cols=36 Identities=28% Similarity=0.487 Sum_probs=32.3
Q ss_pred CCCCcEEEECCChHHHHHHHHhhc-CCcEEEEcCCCc
Q 017664 14 VEKKKVVVIGGGVGGSLLAYHIQS-FADVVLIDEKEY 49 (368)
Q Consensus 14 ~~~~~vvIIGaG~aGl~aA~~L~~-g~~v~lie~~~~ 49 (368)
+..+||+||||||+|+++|..|++ |++|+|+|+.+.
T Consensus 5 ~~~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~ 41 (545)
T PRK06126 5 TSETPVLIVGGGPVGLALALDLGRRGVDSILVERKDG 41 (545)
T ss_pred CccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence 346899999999999999999984 999999999864
No 256
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=97.83 E-value=2.1e-05 Score=76.36 Aligned_cols=54 Identities=13% Similarity=0.180 Sum_probs=41.2
Q ss_pred chhHHHHHHHHHcCCcEEEecceeeecccCCC--eEEcCC---Cc--EEecCEEEEccCCC
Q 017664 182 SRASQIALDWLTSKKVEVILNQSVTLNTISDG--LIETSS---GE--TIDTDCHFMCTGKA 235 (368)
Q Consensus 182 ~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~--~v~~~~---g~--~i~~d~vi~a~G~~ 235 (368)
..+...+.+.+++.|++++++++|..+..+++ .+.+.+ |+ ++.++.||.|+|..
T Consensus 155 ~rl~~~l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~v~~~~~~~g~~~~i~a~~VVnAaG~w 215 (508)
T PRK12266 155 ARLVVLNARDAAERGAEILTRTRVVSARRENGLWHVTLEDTATGKRYTVRARALVNAAGPW 215 (508)
T ss_pred HHHHHHHHHHHHHcCCEEEcCcEEEEEEEeCCEEEEEEEEcCCCCEEEEEcCEEEECCCcc
Confidence 35556666778889999999999998876655 344432 43 78999999999975
No 257
>PRK12831 putative oxidoreductase; Provisional
Probab=97.83 E-value=6.5e-05 Score=72.08 Aligned_cols=92 Identities=17% Similarity=0.207 Sum_probs=66.7
Q ss_pred cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccc-------cc--cCch-hHHHHHHHHHcCCcEEEecceeee
Q 017664 138 SANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLL-------EF--VGSR-ASQIALDWLTSKKVEVILNQSVTL 207 (368)
Q Consensus 138 ~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l-------~~--~~~~-~~~~~~~~l~~~gv~i~~~~~v~~ 207 (368)
.+++++|||+|+.|+.+|..|++ .+.+|+++++.+.+. +. ++.+ +.....+.+++.|+++++++.+..
T Consensus 139 ~~~~V~IIG~GpAGl~aA~~l~~--~G~~V~v~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~~gv~i~~~~~v~~ 216 (464)
T PRK12831 139 KGKKVAVIGSGPAGLTCAGDLAK--MGYDVTIFEALHEPGGVLVYGIPEFRLPKETVVKKEIENIKKLGVKIETNVVVGK 216 (464)
T ss_pred CCCEEEEECcCHHHHHHHHHHHh--CCCeEEEEecCCCCCCeeeecCCCccCCccHHHHHHHHHHHHcCCEEEcCCEECC
Confidence 47899999999999999999985 588999999765431 11 2222 566667888999999999986621
Q ss_pred cccCCCeEEcCCC-cEEecCEEEEccCC-CCC
Q 017664 208 NTISDGLIETSSG-ETIDTDCHFMCTGK-AMA 237 (368)
Q Consensus 208 i~~~~~~v~~~~g-~~i~~d~vi~a~G~-~p~ 237 (368)
.+..++. +.+.+|.||+|||. .|.
T Consensus 217 ------~v~~~~~~~~~~~d~viiAtGa~~~~ 242 (464)
T PRK12831 217 ------TVTIDELLEEEGFDAVFIGSGAGLPK 242 (464)
T ss_pred ------cCCHHHHHhccCCCEEEEeCCCCCCC
Confidence 2222232 24569999999997 453
No 258
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=97.83 E-value=1.9e-05 Score=73.80 Aligned_cols=32 Identities=22% Similarity=0.394 Sum_probs=29.6
Q ss_pred CCcEEEECCChHHHHHHHHhhc-CCcEEEEcCC
Q 017664 16 KKKVVVIGGGVGGSLLAYHIQS-FADVVLIDEK 47 (368)
Q Consensus 16 ~~~vvIIGaG~aGl~aA~~L~~-g~~v~lie~~ 47 (368)
++||+||||||+|+++|..|++ |++|+|+|+.
T Consensus 1 ~~dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~ 33 (374)
T PRK06617 1 MSNTVILGCGLSGMLTALSFAQKGIKTTIFESK 33 (374)
T ss_pred CccEEEECCCHHHHHHHHHHHcCCCeEEEecCC
Confidence 4689999999999999999985 9999999986
No 259
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=97.82 E-value=2e-05 Score=74.14 Aligned_cols=34 Identities=26% Similarity=0.476 Sum_probs=31.3
Q ss_pred CCcEEEECCChHHHHHHHHhhc-CCcEEEEcCCCc
Q 017664 16 KKKVVVIGGGVGGSLLAYHIQS-FADVVLIDEKEY 49 (368)
Q Consensus 16 ~~~vvIIGaG~aGl~aA~~L~~-g~~v~lie~~~~ 49 (368)
++||+||||||+|+++|..|++ |++|+|+|+.+.
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~ 36 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSR 36 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCc
Confidence 5799999999999999999985 999999999874
No 260
>PRK08244 hypothetical protein; Provisional
Probab=97.82 E-value=1.9e-05 Score=76.60 Aligned_cols=34 Identities=29% Similarity=0.464 Sum_probs=31.1
Q ss_pred CCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCc
Q 017664 16 KKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEY 49 (368)
Q Consensus 16 ~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~ 49 (368)
++||+||||||+|+++|..|+ .|.+|+|||+.+.
T Consensus 2 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~ 36 (493)
T PRK08244 2 KYEVIIIGGGPVGLMLASELALAGVKTCVIERLKE 36 (493)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 479999999999999999998 4999999999864
No 261
>PRK10262 thioredoxin reductase; Provisional
Probab=97.81 E-value=0.00021 Score=65.34 Aligned_cols=97 Identities=20% Similarity=0.268 Sum_probs=65.7
Q ss_pred cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCc---cc--------ccc-----cCchhHHHHHHHHHcCCcEEEe
Q 017664 138 SANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGP---KL--------LEF-----VGSRASQIALDWLTSKKVEVIL 201 (368)
Q Consensus 138 ~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~---~~--------l~~-----~~~~~~~~~~~~l~~~gv~i~~ 201 (368)
+.++++|||+|+.|+.+|..+.+ .+.++.+++... .+ ++. ..+.+.+.+.+..++.+++++.
T Consensus 5 ~~~~vvIIGgGpaGl~aA~~l~~--~g~~~~~ie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (321)
T PRK10262 5 KHSKLLILGSGPAGYTAAVYAAR--ANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIF 82 (321)
T ss_pred CcCCEEEECCCHHHHHHHHHHHH--CCCCeEEEEeecCCCceecCceECCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEe
Confidence 46789999999999999999885 366777775321 11 011 1123456667777778888776
Q ss_pred cceeeecccCCCe--EEcCCCcEEecCEEEEccCCCCCc
Q 017664 202 NQSVTLNTISDGL--IETSSGETIDTDCHFMCTGKAMAS 238 (368)
Q Consensus 202 ~~~v~~i~~~~~~--v~~~~g~~i~~d~vi~a~G~~p~~ 238 (368)
+ .+..++..++. +..+++ .+.+|.+|+|||..|..
T Consensus 83 ~-~v~~v~~~~~~~~v~~~~~-~~~~d~vilAtG~~~~~ 119 (321)
T PRK10262 83 D-HINKVDLQNRPFRLTGDSG-EYTCDALIIATGASARY 119 (321)
T ss_pred e-EEEEEEecCCeEEEEecCC-EEEECEEEECCCCCCCC
Confidence 5 45556555553 433333 68999999999998753
No 262
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.81 E-value=2.4e-05 Score=75.97 Aligned_cols=54 Identities=11% Similarity=0.100 Sum_probs=41.9
Q ss_pred chhHHHHHHHHHcCCcEEEecceeeecccCCC--eEEcCCC----cEEecCEEEEccCCC
Q 017664 182 SRASQIALDWLTSKKVEVILNQSVTLNTISDG--LIETSSG----ETIDTDCHFMCTGKA 235 (368)
Q Consensus 182 ~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~--~v~~~~g----~~i~~d~vi~a~G~~ 235 (368)
..+...+....++.|++++.+++|..+..+++ .+.+.++ .++.++.||.|+|..
T Consensus 155 ~rl~~~l~~~a~~~Ga~i~~~~~V~~i~~~~~~~~v~~~~~~g~~~~i~a~~VVnAaG~w 214 (502)
T PRK13369 155 ARLVVLNALDAAERGATILTRTRCVSARREGGLWRVETRDADGETRTVRARALVNAAGPW 214 (502)
T ss_pred HHHHHHHHHHHHHCCCEEecCcEEEEEEEcCCEEEEEEEeCCCCEEEEEecEEEECCCcc
Confidence 45566677778899999999999998877655 4554443 368999999999965
No 263
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.80 E-value=0.00016 Score=71.10 Aligned_cols=95 Identities=17% Similarity=0.210 Sum_probs=70.3
Q ss_pred CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccc--------c---cc----cCchhHHHHHHHHHcCCcEEEecce
Q 017664 140 NSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKL--------L---EF----VGSRASQIALDWLTSKKVEVILNQS 204 (368)
Q Consensus 140 ~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~--------l---~~----~~~~~~~~~~~~l~~~gv~i~~~~~ 204 (368)
..|+|||||+.|+.+|..+.+ .+.+|+++++...- . +. ....+.+.+.+.+++.|++++ ++.
T Consensus 5 yDVvIIGgGpAGL~AA~~lar--~g~~V~liE~~~~GG~~~~~~~i~~~pg~~~~~~~~l~~~l~~~~~~~gv~~~-~~~ 81 (555)
T TIGR03143 5 YDLIIIGGGPAGLSAGIYAGR--AKLDTLIIEKDDFGGQITITSEVVNYPGILNTTGPELMQEMRQQAQDFGVKFL-QAE 81 (555)
T ss_pred CcEEEECCCHHHHHHHHHHHH--CCCCEEEEecCCCCceEEeccccccCCCCcCCCHHHHHHHHHHHHHHcCCEEe-ccE
Confidence 479999999999999999885 57899999975310 0 11 112455667778888999986 567
Q ss_pred eeecccCCC--eEEcCCCcEEecCEEEEccCCCCCc
Q 017664 205 VTLNTISDG--LIETSSGETIDTDCHFMCTGKAMAS 238 (368)
Q Consensus 205 v~~i~~~~~--~v~~~~g~~i~~d~vi~a~G~~p~~ 238 (368)
+..+..++. .+.+.++ ++.+|.+|+|||..|..
T Consensus 82 V~~i~~~~~~~~V~~~~g-~~~a~~lVlATGa~p~~ 116 (555)
T TIGR03143 82 VLDVDFDGDIKTIKTARG-DYKTLAVLIATGASPRK 116 (555)
T ss_pred EEEEEecCCEEEEEecCC-EEEEeEEEECCCCccCC
Confidence 777766544 5666666 58999999999998754
No 264
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=97.80 E-value=0.00016 Score=69.19 Aligned_cols=94 Identities=19% Similarity=0.204 Sum_probs=64.3
Q ss_pred eEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccc---------------------------cc----C--------
Q 017664 141 SVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLE---------------------------FV----G-------- 181 (368)
Q Consensus 141 ~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~---------------------------~~----~-------- 181 (368)
.++|||+|+.|+.+|..+++ .+.+|.++++.. +.. .+ .
T Consensus 4 DvvVIG~GpaG~~aA~~aa~--~G~~V~lie~~~-~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~ 80 (446)
T TIGR01424 4 DLFVIGAGSGGVRAARLAAN--HGAKVAIAEEPR-VGGTCVIRGCVPKKLMVYGSTFGGEFEDAAGYGWTVGKARFDWKK 80 (446)
T ss_pred cEEEECCCHHHHHHHHHHHh--CCCcEEEEecCc-cCceeecCCcCchHHHHHHHHHHHHHhhhHhcCcCCCCCCcCHHH
Confidence 58999999999999999885 589999998741 100 00 0
Q ss_pred ---------chhHHHHHHHHHcCCcEEEecceeeecccCCCeEEcCCCcEEecCEEEEccCCCCCch
Q 017664 182 ---------SRASQIALDWLTSKKVEVILNQSVTLNTISDGLIETSSGETIDTDCHFMCTGKAMASS 239 (368)
Q Consensus 182 ---------~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~v~~~~g~~i~~d~vi~a~G~~p~~~ 239 (368)
..+.+.+++.+++.||+++.+ ++..+..+.-.+ ..+|+++++|.+|+|||.+|..+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g-~~~~v~~~~v~v-~~~g~~~~~d~lIiATGs~p~~p 145 (446)
T TIGR01424 81 LLQKKDDEIARLSGLYKRLLANAGVELLEG-RARLVGPNTVEV-LQDGTTYTAKKILIAVGGRPQKP 145 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCcEEEEE-EEEEecCCEEEE-ecCCeEEEcCEEEEecCCcCCCC
Confidence 012233455677889999877 444443321123 34677899999999999998643
No 265
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=97.78 E-value=0.00013 Score=70.85 Aligned_cols=103 Identities=17% Similarity=0.270 Sum_probs=79.2
Q ss_pred CCeEEEEcCchhHHHHHHHHhhhCCC-CeEEEEecCcccc-------cccC-----chhHHHHHHHHHcCCcEEEeccee
Q 017664 139 ANSVLIVGGGPTGVELAGEIAVDFPD-KKVILVHRGPKLL-------EFVG-----SRASQIALDWLTSKKVEVILNQSV 205 (368)
Q Consensus 139 ~~~v~VvG~g~~~~e~a~~l~~~~~~-~~v~~i~~~~~~l-------~~~~-----~~~~~~~~~~l~~~gv~i~~~~~v 205 (368)
..+++|||.|..|.-+..++.+..++ ..|+++...++.. +.+. .++...-.++.+++||+++++.++
T Consensus 3 k~klvvvGnGmag~r~iEell~~~~~~~~iTvfg~Ep~~nY~Ri~Ls~vl~~~~~~edi~l~~~dwy~~~~i~L~~~~~v 82 (793)
T COG1251 3 KQKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRPNYNRILLSSVLAGEKTAEDISLNRNDWYEENGITLYTGEKV 82 (793)
T ss_pred ceeEEEEecccchhhHHHHHHhcCcccceEEEeccCCCccccceeeccccCCCccHHHHhccchhhHHHcCcEEEcCCee
Confidence 45799999999999888888864333 3688876555421 1111 133333457899999999999999
Q ss_pred eecccCCCeEEcCCCcEEecCEEEEccCCCCCchhh
Q 017664 206 TLNTISDGLIETSSGETIDTDCHFMCTGKAMASSWL 241 (368)
Q Consensus 206 ~~i~~~~~~v~~~~g~~i~~d~vi~a~G~~p~~~~~ 241 (368)
..|..++..|.+++|.++.+|-+|+|||..|....+
T Consensus 83 ~~idr~~k~V~t~~g~~~~YDkLilATGS~pfi~Pi 118 (793)
T COG1251 83 IQIDRANKVVTTDAGRTVSYDKLIIATGSYPFILPI 118 (793)
T ss_pred EEeccCcceEEccCCcEeecceeEEecCccccccCC
Confidence 999888889999999999999999999999865443
No 266
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=97.78 E-value=6.4e-05 Score=72.22 Aligned_cols=91 Identities=22% Similarity=0.310 Sum_probs=67.4
Q ss_pred cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccc-------c--ccCchhHHHHHHHHHcCCcEEEecceeeec
Q 017664 138 SANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLL-------E--FVGSRASQIALDWLTSKKVEVILNQSVTLN 208 (368)
Q Consensus 138 ~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l-------~--~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i 208 (368)
.+++++|||+|++|+.+|..+++ .+.+|+++++.+.+. + ..+.++.....+.+++.|++++.++.+...
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~--~G~~V~i~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~~~ 217 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILAR--AGVQVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEFHLNCEVGRD 217 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHH--cCCeEEEEecCCCCCceeeecCccccCCHHHHHHHHHHHHHCCCEEECCCEeCCc
Confidence 46899999999999999999985 488999999876542 1 234455666778889999999999876321
Q ss_pred ccCCCeEEcCCCcEEecCEEEEccCCCCC
Q 017664 209 TISDGLIETSSGETIDTDCHFMCTGKAMA 237 (368)
Q Consensus 209 ~~~~~~v~~~~g~~i~~d~vi~a~G~~p~ 237 (368)
+..++ ....+|.||+|||..+.
T Consensus 218 ------~~~~~-~~~~~D~vilAtGa~~~ 239 (467)
T TIGR01318 218 ------ISLDD-LLEDYDAVFLGVGTYRS 239 (467)
T ss_pred ------cCHHH-HHhcCCEEEEEeCCCCC
Confidence 11111 12469999999998764
No 267
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=97.78 E-value=3e-05 Score=77.17 Aligned_cols=37 Identities=22% Similarity=0.355 Sum_probs=33.3
Q ss_pred CCCCCcEEEECCChHHHHHHHHhhc--CCcEEEEcCCCc
Q 017664 13 LVEKKKVVVIGGGVGGSLLAYHIQS--FADVVLIDEKEY 49 (368)
Q Consensus 13 ~~~~~~vvIIGaG~aGl~aA~~L~~--g~~v~lie~~~~ 49 (368)
|.+++||+||||||+||++|..|++ |.+|+|||+.+.
T Consensus 29 ~~~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~ 67 (634)
T PRK08294 29 LPDEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPG 67 (634)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCC
Confidence 5568899999999999999999974 899999999864
No 268
>PRK07846 mycothione reductase; Reviewed
Probab=97.76 E-value=9.3e-05 Score=70.84 Aligned_cols=96 Identities=16% Similarity=0.197 Sum_probs=62.8
Q ss_pred CCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeeccceeeeecccccccceeecccccCceeEE-EeEEEEeecc
Q 017664 16 KKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITWASLRAVVEPSFAVRSVINHGDYLSNVKIV-VSTAVSITDT 93 (368)
Q Consensus 16 ~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 93 (368)
..+++|||||+.|+.+|..|+ .|.+|+++++.+.+... ..+... +.+.... ..+++++ ...+..++..
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll~~-------~d~~~~-~~l~~l~--~~~v~i~~~~~v~~i~~~ 235 (451)
T PRK07846 166 PESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLLRH-------LDDDIS-ERFTELA--SKRWDVRLGRNVVGVSQD 235 (451)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccccc-------cCHHHH-HHHHHHH--hcCeEEEeCCEEEEEEEc
Confidence 468999999999999999987 49999999998754311 111111 0011000 1244443 2344444422
Q ss_pred ----EEEecCCeEEEecEEEEecCCCCCCCCc
Q 017664 94 ----EVVTAGGQTFVYDYVVVATGHVESVPKS 121 (368)
Q Consensus 94 ----~v~~~~g~~~~~d~lvlAtG~~~~~p~~ 121 (368)
.+.+.+++.+++|.+++|+|..|+.+.+
T Consensus 236 ~~~v~v~~~~g~~i~~D~vl~a~G~~pn~~~l 267 (451)
T PRK07846 236 GSGVTLRLDDGSTVEADVLLVATGRVPNGDLL 267 (451)
T ss_pred CCEEEEEECCCcEeecCEEEEEECCccCcccc
Confidence 3555678889999999999999987654
No 269
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=97.76 E-value=0.00019 Score=66.80 Aligned_cols=94 Identities=22% Similarity=0.275 Sum_probs=64.3
Q ss_pred eEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccc-----ccCchhH------------------------------
Q 017664 141 SVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLE-----FVGSRAS------------------------------ 185 (368)
Q Consensus 141 ~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~-----~~~~~~~------------------------------ 185 (368)
.++|||+|++|+.+|..|.+..++.+|.++++.+.+.+ .+..++.
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~~tw~~~~~~~~~~~~~~~~~~v~~~W~~~~v~~~~~~~~l~ 80 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGNHTWSFFDSDLSDAQHAWLADLVQTDWPGYEVRFPKYRRKLK 80 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCcccceecccccchhhhhhhhhhheEeCCCCEEECcchhhhcC
Confidence 37999999999999999986556899999998764322 1111111
Q ss_pred --------HHHHHH-HHcCCcEEEecceeeecccCCCeEEcCCCcEEecCEEEEccCCCC
Q 017664 186 --------QIALDW-LTSKKVEVILNQSVTLNTISDGLIETSSGETIDTDCHFMCTGKAM 236 (368)
Q Consensus 186 --------~~~~~~-l~~~gv~i~~~~~v~~i~~~~~~v~~~~g~~i~~d~vi~a~G~~p 236 (368)
..+.+. +++.+..++.+++|..+. .+.+.+.+|+++++|.||.|.|..+
T Consensus 81 ~~Y~~I~r~~f~~~l~~~l~~~i~~~~~V~~v~--~~~v~l~dg~~~~A~~VI~A~G~~s 138 (370)
T TIGR01789 81 TAYRSMTSTRFHEGLLQAFPEGVILGRKAVGLD--ADGVDLAPGTRINARSVIDCRGFKP 138 (370)
T ss_pred CCceEEEHHHHHHHHHHhhcccEEecCEEEEEe--CCEEEECCCCEEEeeEEEECCCCCC
Confidence 011122 222233467788888773 3356668899999999999999775
No 270
>PRK07538 hypothetical protein; Provisional
Probab=97.75 E-value=2.7e-05 Score=73.80 Aligned_cols=33 Identities=33% Similarity=0.583 Sum_probs=30.4
Q ss_pred CcEEEECCChHHHHHHHHhhc-CCcEEEEcCCCc
Q 017664 17 KKVVVIGGGVGGSLLAYHIQS-FADVVLIDEKEY 49 (368)
Q Consensus 17 ~~vvIIGaG~aGl~aA~~L~~-g~~v~lie~~~~ 49 (368)
+||+||||||+|+++|..|++ |++|+|+|+.+.
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 34 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPE 34 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCc
Confidence 489999999999999999985 999999999875
No 271
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=97.75 E-value=6.2e-05 Score=71.11 Aligned_cols=94 Identities=22% Similarity=0.262 Sum_probs=64.2
Q ss_pred CCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeeccceeeeecccccccceeecccccCceeEE-EeEEEEeecc
Q 017664 16 KKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITWASLRAVVEPSFAVRSVINHGDYLSNVKIV-VSTAVSITDT 93 (368)
Q Consensus 16 ~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 93 (368)
..+++|||+|+.|+.+|..|+ +|++|+++|+.+..+..... +.... .+....+. .+++++ ...+..++.+
T Consensus 136 ~~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~~~------~~~~~-~~~~~l~~-~gi~~~~~~~~~~i~~~ 207 (415)
T COG0446 136 PKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLLD------PEVAE-ELAELLEK-YGVELLLGTKVVGVEGK 207 (415)
T ss_pred cCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccchhhhh------HHHHH-HHHHHHHH-CCcEEEeCCceEEEEcc
Confidence 479999999999999999998 59999999999987644321 11111 11111111 145553 3344555543
Q ss_pred ----E---EEecCCeEEEecEEEEecCCCCC
Q 017664 94 ----E---VVTAGGQTFVYDYVVVATGHVES 117 (368)
Q Consensus 94 ----~---v~~~~g~~~~~d~lvlAtG~~~~ 117 (368)
. +...++..+++|.+++++|.+|+
T Consensus 208 ~~~~~~~~~~~~~~~~~~~d~~~~~~g~~p~ 238 (415)
T COG0446 208 GNTLVVERVVGIDGEEIKADLVIIGPGERPN 238 (415)
T ss_pred cCcceeeEEEEeCCcEEEeeEEEEeeccccc
Confidence 1 56677888999999999999985
No 272
>PLN02676 polyamine oxidase
Probab=97.75 E-value=2.3e-05 Score=75.60 Aligned_cols=47 Identities=15% Similarity=0.275 Sum_probs=38.8
Q ss_pred CCcCCCCCCcEEEECCChHHHHHHHHhhc-CC-cEEEEcCCCceeeecc
Q 017664 9 TAAGLVEKKKVVVIGGGVGGSLLAYHIQS-FA-DVVLIDEKEYFEITWA 55 (368)
Q Consensus 9 ~~~~~~~~~~vvIIGaG~aGl~aA~~L~~-g~-~v~lie~~~~~~~~~~ 55 (368)
.++.....+||+|||||++||+||++|++ |. +|+|+|+++.+|+...
T Consensus 19 ~~~~~~~~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~GG~~~ 67 (487)
T PLN02676 19 AAMDAKPSPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRIGGRMR 67 (487)
T ss_pred hhhcccCCCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCCCCcce
Confidence 33445567899999999999999999984 87 6999999999886543
No 273
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=97.74 E-value=2.4e-05 Score=70.77 Aligned_cols=39 Identities=21% Similarity=0.296 Sum_probs=33.6
Q ss_pred CCCcEEEECCChHHHHHHHHhh-------cCCcEEEEcCCCceeee
Q 017664 15 EKKKVVVIGGGVGGSLLAYHIQ-------SFADVVLIDEKEYFEIT 53 (368)
Q Consensus 15 ~~~~vvIIGaG~aGl~aA~~L~-------~g~~v~lie~~~~~~~~ 53 (368)
..+||+|||||||||+||.+|+ +..+|.|+|+....|..
T Consensus 75 e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~Ggh 120 (621)
T KOG2415|consen 75 EEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGH 120 (621)
T ss_pred ccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCc
Confidence 4689999999999999999885 26799999999887743
No 274
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=97.74 E-value=8.4e-05 Score=75.76 Aligned_cols=91 Identities=18% Similarity=0.242 Sum_probs=67.1
Q ss_pred CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccc-------c--ccCchhHHHHHHHHHcCCcEEEecceeeecc
Q 017664 139 ANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLL-------E--FVGSRASQIALDWLTSKKVEVILNQSVTLNT 209 (368)
Q Consensus 139 ~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l-------~--~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~ 209 (368)
+++|+|||+|+.|+.+|..|.+ .+.+|+++++.+.+. | .++.++.+...+.+++.||++++++.+.
T Consensus 431 ~~~V~IIGaGpAGl~aA~~l~~--~G~~V~v~e~~~~~GG~l~~gip~~rlp~~~~~~~~~~l~~~gv~~~~~~~v~--- 505 (752)
T PRK12778 431 GKKVAVIGSGPAGLSFAGDLAK--RGYDVTVFEALHEIGGVLKYGIPEFRLPKKIVDVEIENLKKLGVKFETDVIVG--- 505 (752)
T ss_pred CCEEEEECcCHHHHHHHHHHHH--CCCeEEEEecCCCCCCeeeecCCCCCCCHHHHHHHHHHHHHCCCEEECCCEEC---
Confidence 6799999999999999999985 588999999865321 1 1234555666678889999999987652
Q ss_pred cCCCeEEcCCCcEEecCEEEEccCC-CCC
Q 017664 210 ISDGLIETSSGETIDTDCHFMCTGK-AMA 237 (368)
Q Consensus 210 ~~~~~v~~~~g~~i~~d~vi~a~G~-~p~ 237 (368)
..+.+++.....+|.||+|||. .|.
T Consensus 506 ---~~v~~~~l~~~~ydavvlAtGa~~~~ 531 (752)
T PRK12778 506 ---KTITIEELEEEGFKGIFIASGAGLPN 531 (752)
T ss_pred ---CcCCHHHHhhcCCCEEEEeCCCCCCC
Confidence 1233334345669999999997 354
No 275
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=97.74 E-value=0.00011 Score=70.81 Aligned_cols=96 Identities=19% Similarity=0.221 Sum_probs=62.7
Q ss_pred CCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeeccceeeeecccccccceeecccccCceeEEEe-EEEEee--
Q 017664 16 KKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITWASLRAVVEPSFAVRSVINHGDYLSNVKIVVS-TAVSIT-- 91 (368)
Q Consensus 16 ~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-- 91 (368)
..+++|||+|+.|+.+|..|+ .|.+|+|+++.+.+... .++...........+ .+++++.. .+..+.
T Consensus 175 ~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~-------~d~~~~~~l~~~l~~--~gI~v~~~~~v~~i~~~ 245 (461)
T PRK05249 175 PRSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLLSF-------LDDEISDALSYHLRD--SGVTIRHNEEVEKVEGG 245 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCCc-------CCHHHHHHHHHHHHH--cCCEEEECCEEEEEEEe
Confidence 478999999999999999987 59999999998754211 111111110111111 25665533 444443
Q ss_pred cc--EEEecCCeEEEecEEEEecCCCCCCCC
Q 017664 92 DT--EVVTAGGQTFVYDYVVVATGHVESVPK 120 (368)
Q Consensus 92 ~~--~v~~~~g~~~~~d~lvlAtG~~~~~p~ 120 (368)
.. .+.+.++..+++|.+++|+|.+|+...
T Consensus 246 ~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~ 276 (461)
T PRK05249 246 DDGVIVHLKSGKKIKADCLLYANGRTGNTDG 276 (461)
T ss_pred CCeEEEEECCCCEEEeCEEEEeecCCccccC
Confidence 22 345567778999999999999987654
No 276
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.73 E-value=0.00015 Score=70.07 Aligned_cols=83 Identities=20% Similarity=0.192 Sum_probs=65.3
Q ss_pred cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHcCCcEEEecceeeecccCCCeEEc
Q 017664 138 SANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVTLNTISDGLIET 217 (368)
Q Consensus 138 ~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~v~~ 217 (368)
.+++++|+|+|.+|+++|..|.+ .+.+|+++++.+. .....+.+.+++.||+++++..+.
T Consensus 15 ~~~~v~viG~G~~G~~~A~~L~~--~G~~V~~~d~~~~-------~~~~~~~~~l~~~gv~~~~~~~~~----------- 74 (480)
T PRK01438 15 QGLRVVVAGLGVSGFAAADALLE--LGARVTVVDDGDD-------ERHRALAAILEALGATVRLGPGPT----------- 74 (480)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH--CCCEEEEEeCCch-------hhhHHHHHHHHHcCCEEEECCCcc-----------
Confidence 47899999999999999988874 5789999986643 334556677889999999887542
Q ss_pred CCCcEEecCEEEEccCCCCCchhhhc
Q 017664 218 SSGETIDTDCHFMCTGKAMASSWLRE 243 (368)
Q Consensus 218 ~~g~~i~~d~vi~a~G~~p~~~~~~~ 243 (368)
....+|+||+++|.+|+.+++..
T Consensus 75 ---~~~~~D~Vv~s~Gi~~~~~~~~~ 97 (480)
T PRK01438 75 ---LPEDTDLVVTSPGWRPDAPLLAA 97 (480)
T ss_pred ---ccCCCCEEEECCCcCCCCHHHHH
Confidence 12469999999999999876543
No 277
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=97.72 E-value=3.1e-05 Score=73.86 Aligned_cols=31 Identities=35% Similarity=0.475 Sum_probs=28.7
Q ss_pred CcEEEECCChHHHHHHHHhhc-----CCcEEEEcCC
Q 017664 17 KKVVVIGGGVGGSLLAYHIQS-----FADVVLIDEK 47 (368)
Q Consensus 17 ~~vvIIGaG~aGl~aA~~L~~-----g~~v~lie~~ 47 (368)
+||+||||||+|+++|..|++ |.+|+|||+.
T Consensus 1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~ 36 (437)
T TIGR01989 1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAV 36 (437)
T ss_pred CcEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCC
Confidence 589999999999999999974 9999999994
No 278
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=97.72 E-value=0.00012 Score=70.76 Aligned_cols=97 Identities=24% Similarity=0.277 Sum_probs=61.4
Q ss_pred CCcEEEECCChHHHHHHHHhhc-CCcEEEEcCCCceeeeccceeeeecccccccceeecccccCceeEEEe-EEEEeecc
Q 017664 16 KKKVVVIGGGVGGSLLAYHIQS-FADVVLIDEKEYFEITWASLRAVVEPSFAVRSVINHGDYLSNVKIVVS-TAVSITDT 93 (368)
Q Consensus 16 ~~~vvIIGaG~aGl~aA~~L~~-g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 93 (368)
..+++|||+|+.|+.+|..|++ |.+|+|+++.+.+... ..+.+.........+ .+++++.. .+..++..
T Consensus 183 ~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~-------~d~~~~~~~~~~l~~--~gi~i~~~~~v~~i~~~ 253 (475)
T PRK06327 183 PKKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFLAA-------ADEQVAKEAAKAFTK--QGLDIHLGVKIGEIKTG 253 (475)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccCCc-------CCHHHHHHHHHHHHH--cCcEEEeCcEEEEEEEc
Confidence 4689999999999999998874 9999999998754211 011111110001111 25665543 45555422
Q ss_pred ----EEEecC--C--eEEEecEEEEecCCCCCCCCc
Q 017664 94 ----EVVTAG--G--QTFVYDYVVVATGHVESVPKS 121 (368)
Q Consensus 94 ----~v~~~~--g--~~~~~d~lvlAtG~~~~~p~~ 121 (368)
.+...+ + ..+++|.|++|+|..|..+.+
T Consensus 254 ~~~v~v~~~~~~g~~~~i~~D~vl~a~G~~p~~~~l 289 (475)
T PRK06327 254 GKGVSVAYTDADGEAQTLEVDKLIVSIGRVPNTDGL 289 (475)
T ss_pred CCEEEEEEEeCCCceeEEEcCEEEEccCCccCCCCC
Confidence 233333 2 569999999999999987753
No 279
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=97.71 E-value=3.3e-05 Score=74.91 Aligned_cols=54 Identities=13% Similarity=0.112 Sum_probs=46.7
Q ss_pred chhHHHHHHHHHcCCcEEEecceeeecccCCC---eEEcCCCcEEecCEEEEccCCC
Q 017664 182 SRASQIALDWLTSKKVEVILNQSVTLNTISDG---LIETSSGETIDTDCHFMCTGKA 235 (368)
Q Consensus 182 ~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~---~v~~~~g~~i~~d~vi~a~G~~ 235 (368)
..+.+.+.+.+++.|++++++++|++|..+++ .+++.+|+++++|.||+++|..
T Consensus 229 ~~l~~~L~~~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~g~~~~ad~vV~a~~~~ 285 (493)
T TIGR02730 229 GQIAESLVKGLEKHGGQIRYRARVTKIILENGKAVGVKLADGEKIYAKRIVSNATRW 285 (493)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCeeeEEEecCCcEEEEEeCCCCEEEcCEEEECCChH
Confidence 46778888999999999999999999887655 6788899899999999998854
No 280
>PRK09897 hypothetical protein; Provisional
Probab=97.70 E-value=0.00032 Score=67.97 Aligned_cols=97 Identities=20% Similarity=0.170 Sum_probs=66.2
Q ss_pred CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccc----------------------------------------
Q 017664 140 NSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEF---------------------------------------- 179 (368)
Q Consensus 140 ~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~---------------------------------------- 179 (368)
++|+|||+|++|+-+|..|.+.....+|++++++..+...
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~G~ays~~~~~~~L~~N~~~~~~p~~~~~f~~Wl~~~~~~~~ 81 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVGMPYSDEENSKMMLANIASIEIPPIYCTYLEWLQKQEDSHL 81 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCcceeecCCCChHHHHhcccccccCCChHHHHHHhhhhhHHHH
Confidence 5799999999999999999864445689999986432100
Q ss_pred --------------cCch--hH-------HHHHHHHHcCC--cEEEecceeeecccCCC--eEEcCC-CcEEecCEEEEc
Q 017664 180 --------------VGSR--AS-------QIALDWLTSKK--VEVILNQSVTLNTISDG--LIETSS-GETIDTDCHFMC 231 (368)
Q Consensus 180 --------------~~~~--~~-------~~~~~~l~~~g--v~i~~~~~v~~i~~~~~--~v~~~~-g~~i~~d~vi~a 231 (368)
+.|. .. +.+.+.+++.| +.++.+++|+.++.+++ .+.+.+ +..+.+|.||+|
T Consensus 82 ~~~g~~~~~l~~~~f~PR~l~G~YL~~~f~~l~~~a~~~G~~V~v~~~~~V~~I~~~~~g~~V~t~~gg~~i~aD~VVLA 161 (534)
T PRK09897 82 QRYGVKKETLHDRQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITNAGVMLATNQDLPSETFDLAVIA 161 (534)
T ss_pred HhcCCcceeecCCccCCeecchHHHHHHHHHHHHHHHHcCCeEEEEECCEEEEEEEeCCEEEEEECCCCeEEEcCEEEEC
Confidence 0000 00 11223344555 78888989999877655 556545 468999999999
Q ss_pred cCCCC
Q 017664 232 TGKAM 236 (368)
Q Consensus 232 ~G~~p 236 (368)
+|..+
T Consensus 162 tGh~~ 166 (534)
T PRK09897 162 TGHVW 166 (534)
T ss_pred CCCCC
Confidence 99754
No 281
>PTZ00367 squalene epoxidase; Provisional
Probab=97.70 E-value=4.2e-05 Score=74.74 Aligned_cols=34 Identities=21% Similarity=0.470 Sum_probs=31.3
Q ss_pred CCCcEEEECCChHHHHHHHHhhc-CCcEEEEcCCC
Q 017664 15 EKKKVVVIGGGVGGSLLAYHIQS-FADVVLIDEKE 48 (368)
Q Consensus 15 ~~~~vvIIGaG~aGl~aA~~L~~-g~~v~lie~~~ 48 (368)
..+||+|||||++|+++|..|++ |++|+|+|+..
T Consensus 32 ~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~ 66 (567)
T PTZ00367 32 YDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL 66 (567)
T ss_pred cCccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence 46899999999999999999984 99999999975
No 282
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=97.70 E-value=0.00015 Score=63.67 Aligned_cols=40 Identities=28% Similarity=0.300 Sum_probs=33.9
Q ss_pred cEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeeccce
Q 017664 18 KVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITWASL 57 (368)
Q Consensus 18 ~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~~~~ 57 (368)
.+||||+|.|||+|+..+- ++-.|+++|++..+|++....
T Consensus 11 pvvVIGgGLAGLsasn~iin~gg~V~llek~~s~GGNSiKA 51 (477)
T KOG2404|consen 11 PVVVIGGGLAGLSASNDIINKGGIVILLEKAGSIGGNSIKA 51 (477)
T ss_pred cEEEECCchhhhhhHHHHHhcCCeEEEEeccCCcCCcceec
Confidence 6999999999999999886 566799999999988665443
No 283
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=97.69 E-value=0.00017 Score=69.31 Aligned_cols=97 Identities=18% Similarity=0.215 Sum_probs=60.8
Q ss_pred CCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeeccceeeeecccccccceeecccccCceeEEEe-EEEEeecc
Q 017664 16 KKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITWASLRAVVEPSFAVRSVINHGDYLSNVKIVVS-TAVSITDT 93 (368)
Q Consensus 16 ~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 93 (368)
..+++|||||+.|+.+|..|+ .|.+|+++++.+.+... ..+.+.........+ .+++++.. .+..++..
T Consensus 170 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll~~-------~d~e~~~~l~~~L~~--~GI~i~~~~~V~~i~~~ 240 (458)
T PRK06912 170 PSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLLPG-------EDEDIAHILREKLEN--DGVKIFTGAALKGLNSY 240 (458)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCcc-------ccHHHHHHHHHHHHH--CCCEEEECCEEEEEEEc
Confidence 468999999999999999887 49999999998764311 011111000001111 25666543 44555432
Q ss_pred --EEEe-cCC--eEEEecEEEEecCCCCCCCCc
Q 017664 94 --EVVT-AGG--QTFVYDYVVVATGHVESVPKS 121 (368)
Q Consensus 94 --~v~~-~~g--~~~~~d~lvlAtG~~~~~p~~ 121 (368)
.+.. .++ ..+.+|.|++|+|..|+...+
T Consensus 241 ~~~v~~~~~g~~~~i~~D~vivA~G~~p~~~~l 273 (458)
T PRK06912 241 KKQALFEYEGSIQEVNAEFVLVSVGRKPRVQQL 273 (458)
T ss_pred CCEEEEEECCceEEEEeCEEEEecCCccCCCCC
Confidence 2322 233 368999999999999887653
No 284
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=97.69 E-value=0.00011 Score=70.95 Aligned_cols=88 Identities=18% Similarity=0.325 Sum_probs=66.2
Q ss_pred CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccc-------c--ccCchhHHHHHHHHHcCCcEEEecceeeecc
Q 017664 139 ANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLL-------E--FVGSRASQIALDWLTSKKVEVILNQSVTLNT 209 (368)
Q Consensus 139 ~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l-------~--~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~ 209 (368)
+++++|||+|++|+.+|..|.+ .+.+|+++++.+++. + ..+.++.....+.+++.||++++++.+.. .
T Consensus 143 ~~~V~IIGaG~aGl~aA~~L~~--~g~~V~v~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~~-~ 219 (485)
T TIGR01317 143 GKKVAVVGSGPAGLAAADQLNR--AGHTVTVFEREDRCGGLLMYGIPNMKLDKAIVDRRIDLLSAEGIDFVTNTEIGV-D 219 (485)
T ss_pred CCEEEEECCcHHHHHHHHHHHH--cCCeEEEEecCCCCCceeeccCCCccCCHHHHHHHHHHHHhCCCEEECCCEeCC-c
Confidence 5799999999999999999985 478999999877542 2 12445666667888999999999987741 1
Q ss_pred cCCCeEEcCCCcEEecCEEEEccCCC
Q 017664 210 ISDGLIETSSGETIDTDCHFMCTGKA 235 (368)
Q Consensus 210 ~~~~~v~~~~g~~i~~d~vi~a~G~~ 235 (368)
.. .++...++|.||+|||..
T Consensus 220 ~~------~~~~~~~~d~VilAtGa~ 239 (485)
T TIGR01317 220 IS------ADELKEQFDAVVLAGGAT 239 (485)
T ss_pred cC------HHHHHhhCCEEEEccCCC
Confidence 11 111235799999999987
No 285
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=97.69 E-value=3.7e-05 Score=73.81 Aligned_cols=53 Identities=26% Similarity=0.334 Sum_probs=42.2
Q ss_pred chhHHHHHHHHHcCCcEEEecceeeecccC-CC---eEEcCCCc-----EEecCEEEEccCC
Q 017664 182 SRASQIALDWLTSKKVEVILNQSVTLNTIS-DG---LIETSSGE-----TIDTDCHFMCTGK 234 (368)
Q Consensus 182 ~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~-~~---~v~~~~g~-----~i~~d~vi~a~G~ 234 (368)
..+.+.+.+.+++.|++|++++.|++|+.+ ++ ++++.+|+ ++.+|.||+++..
T Consensus 213 ~~l~~~l~~~l~~~g~~i~l~~~V~~I~~~~~~~v~~v~~~~~~~~~~~~~~a~~VI~a~p~ 274 (453)
T TIGR02731 213 ERLCQPIVDYITSRGGEVRLNSRLKEIVLNEDGSVKHFVLADGEGQRRFEVTADAYVSAMPV 274 (453)
T ss_pred HHHHHHHHHHHHhcCCEEeCCCeeEEEEECCCCCEEEEEEecCCCCceeEEECCEEEEcCCH
Confidence 356788888899999999999999999753 33 36665554 7999999999864
No 286
>PLN02661 Putative thiazole synthesis
Probab=97.68 E-value=4.1e-05 Score=69.45 Aligned_cols=36 Identities=25% Similarity=0.433 Sum_probs=32.5
Q ss_pred CCcEEEECCChHHHHHHHHhh-c-CCcEEEEcCCCcee
Q 017664 16 KKKVVVIGGGVGGSLLAYHIQ-S-FADVVLIDEKEYFE 51 (368)
Q Consensus 16 ~~~vvIIGaG~aGl~aA~~L~-~-g~~v~lie~~~~~~ 51 (368)
.+||+|||||++|++||+.|+ . +.+|+|+|++...+
T Consensus 92 ~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~G 129 (357)
T PLN02661 92 DTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPG 129 (357)
T ss_pred cCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcccc
Confidence 679999999999999999997 3 89999999987764
No 287
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=97.67 E-value=0.00012 Score=76.30 Aligned_cols=89 Identities=16% Similarity=0.163 Sum_probs=65.6
Q ss_pred CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccc-------c--ccCchhHHHHHHHHHcCCcEEEecceeeecc
Q 017664 139 ANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLL-------E--FVGSRASQIALDWLTSKKVEVILNQSVTLNT 209 (368)
Q Consensus 139 ~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l-------~--~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~ 209 (368)
+++|+|||+|+.|+.+|..|.+ .+.+|+++++.+.+. | ..+.++.....+.+++.||++++++.+..
T Consensus 430 ~~kVaIIG~GPAGLsaA~~La~--~G~~VtV~E~~~~~GG~l~~gip~~rl~~e~~~~~~~~l~~~Gv~~~~~~~vg~-- 505 (1006)
T PRK12775 430 LGKVAICGSGPAGLAAAADLVK--YGVDVTVYEALHVVGGVLQYGIPSFRLPRDIIDREVQRLVDIGVKIETNKVIGK-- 505 (1006)
T ss_pred CCEEEEECCCHHHHHHHHHHHH--cCCcEEEEecCCCCcceeeccCCccCCCHHHHHHHHHHHHHCCCEEEeCCccCC--
Confidence 5799999999999999999995 488999999876442 1 12456677778889999999999975421
Q ss_pred cCCCeEEcCCC-cEEecCEEEEccCCC
Q 017664 210 ISDGLIETSSG-ETIDTDCHFMCTGKA 235 (368)
Q Consensus 210 ~~~~~v~~~~g-~~i~~d~vi~a~G~~ 235 (368)
.+...+- +...+|.||+|||..
T Consensus 506 ----~~~~~~l~~~~~yDaViIATGa~ 528 (1006)
T PRK12775 506 ----TFTVPQLMNDKGFDAVFLGVGAG 528 (1006)
T ss_pred ----ccCHHHHhhccCCCEEEEecCCC
Confidence 1111111 124589999999984
No 288
>PRK14694 putative mercuric reductase; Provisional
Probab=97.67 E-value=0.00014 Score=70.12 Aligned_cols=95 Identities=16% Similarity=0.181 Sum_probs=59.6
Q ss_pred CCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeeccceeeeecccccccceeecccccCceeEEEe-EEEEeec-
Q 017664 16 KKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITWASLRAVVEPSFAVRSVINHGDYLSNVKIVVS-TAVSITD- 92 (368)
Q Consensus 16 ~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~- 92 (368)
..+++|||+|+.|+.+|..|+ .|.+|+++++...+.. ..+........... ..+++++.. .+..++.
T Consensus 178 ~~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~~~l~~--------~~~~~~~~l~~~l~--~~GI~v~~~~~v~~i~~~ 247 (468)
T PRK14694 178 PERLLVIGASVVALELAQAFARLGSRVTVLARSRVLSQ--------EDPAVGEAIEAAFR--REGIEVLKQTQASEVDYN 247 (468)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEECCCCCCC--------CCHHHHHHHHHHHH--hCCCEEEeCCEEEEEEEc
Confidence 468999999999999999987 5999999997543221 11111111000111 125666554 4455542
Q ss_pred -c--EEEecCCeEEEecEEEEecCCCCCCCCc
Q 017664 93 -T--EVVTAGGQTFVYDYVVVATGHVESVPKS 121 (368)
Q Consensus 93 -~--~v~~~~g~~~~~d~lvlAtG~~~~~p~~ 121 (368)
. .+.+. +..+++|.+++|+|..|+....
T Consensus 248 ~~~~~v~~~-~~~i~~D~vi~a~G~~pn~~~l 278 (468)
T PRK14694 248 GREFILETN-AGTLRAEQLLVATGRTPNTENL 278 (468)
T ss_pred CCEEEEEEC-CCEEEeCEEEEccCCCCCcCCC
Confidence 2 23333 3469999999999999877643
No 289
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=97.66 E-value=0.00016 Score=69.64 Aligned_cols=96 Identities=20% Similarity=0.241 Sum_probs=60.2
Q ss_pred CCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeeccceeeeecccccccceeecccccCceeEEEe-EEEEeecc
Q 017664 16 KKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITWASLRAVVEPSFAVRSVINHGDYLSNVKIVVS-TAVSITDT 93 (368)
Q Consensus 16 ~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 93 (368)
..+++|||+|+.|+.+|..|+ .|.+|+++++.+.+.... ++........... ..+++++.. .+..++..
T Consensus 166 ~~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~-------d~~~~~~l~~~l~--~~gV~i~~~~~V~~i~~~ 236 (463)
T TIGR02053 166 PESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLLPRE-------EPEISAAVEEALA--EEGIEVVTSAQVKAVSVR 236 (463)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCCCcc-------CHHHHHHHHHHHH--HcCCEEEcCcEEEEEEEc
Confidence 468999999999999999987 599999999987543110 1111110000011 125665543 34444321
Q ss_pred ----EEEec---CCeEEEecEEEEecCCCCCCCC
Q 017664 94 ----EVVTA---GGQTFVYDYVVVATGHVESVPK 120 (368)
Q Consensus 94 ----~v~~~---~g~~~~~d~lvlAtG~~~~~p~ 120 (368)
.+.+. +++++++|.+++|+|..|...+
T Consensus 237 ~~~~~v~~~~~~~~~~i~~D~ViiA~G~~p~~~~ 270 (463)
T TIGR02053 237 GGGKIITVEKPGGQGEVEADELLVATGRRPNTDG 270 (463)
T ss_pred CCEEEEEEEeCCCceEEEeCEEEEeECCCcCCCC
Confidence 23332 2367999999999999988764
No 290
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=97.66 E-value=0.00019 Score=73.98 Aligned_cols=88 Identities=16% Similarity=0.186 Sum_probs=63.8
Q ss_pred CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccc-------c--ccCchhHHHHHHHHHcCCcEEEecceeeecc
Q 017664 139 ANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLL-------E--FVGSRASQIALDWLTSKKVEVILNQSVTLNT 209 (368)
Q Consensus 139 ~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l-------~--~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~ 209 (368)
+++|+|||+|+.|+.+|..|++ .+.+|+++++.+.+. | ..+.+..+...+.+.+.||++++++...
T Consensus 537 ~kkVaIIGGGPAGLSAA~~LAr--~G~~VTV~Ek~~~lGG~l~~~IP~~rlp~e~l~~~ie~l~~~GVe~~~g~~~d--- 611 (1012)
T TIGR03315 537 AHKVAVIGAGPAGLSAGYFLAR--AGHPVTVFEKKEKPGGVVKNIIPEFRISAESIQKDIELVKFHGVEFKYGCSPD--- 611 (1012)
T ss_pred CCcEEEECCCHHHHHHHHHHHH--CCCeEEEEecccccCceeeecccccCCCHHHHHHHHHHHHhcCcEEEEecccc---
Confidence 4789999999999999999985 588999999876432 1 1233455555677888999999885311
Q ss_pred cCCCeEEcCCCcEEecCEEEEccCCCC
Q 017664 210 ISDGLIETSSGETIDTDCHFMCTGKAM 236 (368)
Q Consensus 210 ~~~~~v~~~~g~~i~~d~vi~a~G~~p 236 (368)
+...+.+...+|.||+|||..+
T Consensus 612 -----~~ve~l~~~gYDaVIIATGA~~ 633 (1012)
T TIGR03315 612 -----LTVAELKNQGYKYVILAIGAWK 633 (1012)
T ss_pred -----eEhhhhhcccccEEEECCCCCC
Confidence 1222333456999999999874
No 291
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=97.66 E-value=4.8e-05 Score=75.12 Aligned_cols=35 Identities=31% Similarity=0.575 Sum_probs=31.8
Q ss_pred CCCCcEEEECCChHHHHHHHHhhc-CCcEEEEcCCC
Q 017664 14 VEKKKVVVIGGGVGGSLLAYHIQS-FADVVLIDEKE 48 (368)
Q Consensus 14 ~~~~~vvIIGaG~aGl~aA~~L~~-g~~v~lie~~~ 48 (368)
.++.+|+|||||++||++|..|++ |++|+|+|+.+
T Consensus 79 ~~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~ 114 (668)
T PLN02927 79 KKKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDL 114 (668)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccc
Confidence 456899999999999999999985 99999999975
No 292
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=97.65 E-value=0.00016 Score=69.35 Aligned_cols=96 Identities=16% Similarity=0.209 Sum_probs=61.9
Q ss_pred CCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeeccceeeeecccccccceeecccccCceeEEE-eEEEEeec-
Q 017664 16 KKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITWASLRAVVEPSFAVRSVINHGDYLSNVKIVV-STAVSITD- 92 (368)
Q Consensus 16 ~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~- 92 (368)
..+++|||+|+.|+.+|..|+ .|.+|+++++.+.+... ..+.... .+.... ..+++++. ..+..++.
T Consensus 169 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ll~~-------~d~~~~~-~l~~~~--~~gI~i~~~~~V~~i~~~ 238 (452)
T TIGR03452 169 PESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLLRH-------LDEDISD-RFTEIA--KKKWDIRLGRNVTAVEQD 238 (452)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccccc-------cCHHHHH-HHHHHH--hcCCEEEeCCEEEEEEEc
Confidence 468999999999999999987 49999999998764211 1111111 011100 12444442 34444432
Q ss_pred -c--EEEecCCeEEEecEEEEecCCCCCCCCc
Q 017664 93 -T--EVVTAGGQTFVYDYVVVATGHVESVPKS 121 (368)
Q Consensus 93 -~--~v~~~~g~~~~~d~lvlAtG~~~~~p~~ 121 (368)
. .+.+.+++.+++|.+++|+|..|+...+
T Consensus 239 ~~~v~v~~~~g~~i~~D~vl~a~G~~pn~~~l 270 (452)
T TIGR03452 239 GDGVTLTLDDGSTVTADVLLVATGRVPNGDLL 270 (452)
T ss_pred CCeEEEEEcCCCEEEcCEEEEeeccCcCCCCc
Confidence 2 3455567789999999999999877553
No 293
>PLN02529 lysine-specific histone demethylase 1
Probab=97.65 E-value=5.7e-05 Score=75.52 Aligned_cols=42 Identities=17% Similarity=0.170 Sum_probs=37.0
Q ss_pred CCCCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeec
Q 017664 13 LVEKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITW 54 (368)
Q Consensus 13 ~~~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~ 54 (368)
..+.++|+|||||++||+||..|+ +|++|+|+|+++.+|+..
T Consensus 157 ~~~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG~~ 199 (738)
T PLN02529 157 EGTEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNRPGGRV 199 (738)
T ss_pred ccCCCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCccCcCce
Confidence 345789999999999999999998 599999999999888653
No 294
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=97.65 E-value=4.6e-05 Score=72.29 Aligned_cols=56 Identities=20% Similarity=0.186 Sum_probs=40.2
Q ss_pred chhHHHHHHHHHcCCcEEEecceeeecccCCC---eEEc---CCCc--EEecCEEEEccCCCCC
Q 017664 182 SRASQIALDWLTSKKVEVILNQSVTLNTISDG---LIET---SSGE--TIDTDCHFMCTGKAMA 237 (368)
Q Consensus 182 ~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~---~v~~---~~g~--~i~~d~vi~a~G~~p~ 237 (368)
..+...+.+.+++.|++++.++.++++..+++ .+.. .+|+ ++.++.||+|||-...
T Consensus 141 ~~~~~~l~~~~~~~gv~i~~~~~~~~Li~e~g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~~ 204 (417)
T PF00890_consen 141 KALIEALAKAAEEAGVDIRFNTRVTDLITEDGRVTGVVAENPADGEFVRIKAKAVILATGGFGG 204 (417)
T ss_dssp HHHHHHHHHHHHHTTEEEEESEEEEEEEEETTEEEEEEEEETTTCEEEEEEESEEEE----BGG
T ss_pred HHHHHHHHHHHhhcCeeeeccceeeeEEEeCCceeEEEEEECCCCeEEEEeeeEEEeccCcccc
Confidence 45677788899999999999999999888766 3322 4564 6789999999996543
No 295
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=97.65 E-value=0.00049 Score=61.88 Aligned_cols=95 Identities=21% Similarity=0.299 Sum_probs=70.4
Q ss_pred CeEEEEcCchhHHHHHHHHhhhCCCCe-EEEEecCccc-----------ccc-----cCchhHHHHHHHHHcCCcEEEec
Q 017664 140 NSVLIVGGGPTGVELAGEIAVDFPDKK-VILVHRGPKL-----------LEF-----VGSRASQIALDWLTSKKVEVILN 202 (368)
Q Consensus 140 ~~v~VvG~g~~~~e~a~~l~~~~~~~~-v~~i~~~~~~-----------l~~-----~~~~~~~~~~~~l~~~gv~i~~~ 202 (368)
..++|||+|+.|+-.|.++.+ .+.+ +.+++....- .|. ..+++.+.+.++.+..++++..
T Consensus 4 ~DviIIG~GPAGl~AAiya~r--~~l~~~li~~~~~~gg~~~~~~~venypg~~~~~~g~~L~~~~~~~a~~~~~~~~~- 80 (305)
T COG0492 4 YDVIIIGGGPAGLTAAIYAAR--AGLKVVLILEGGEPGGQLTKTTDVENYPGFPGGILGPELMEQMKEQAEKFGVEIVE- 80 (305)
T ss_pred eeEEEECCCHHHHHHHHHHHH--cCCCcEEEEecCCcCCccccceeecCCCCCccCCchHHHHHHHHHHHhhcCeEEEE-
Confidence 469999999999999998885 3545 5555543110 111 3456777788888889999987
Q ss_pred ceeeecccCC-C-eEEcCCCcEEecCEEEEccCCCCCc
Q 017664 203 QSVTLNTISD-G-LIETSSGETIDTDCHFMCTGKAMAS 238 (368)
Q Consensus 203 ~~v~~i~~~~-~-~v~~~~g~~i~~d~vi~a~G~~p~~ 238 (368)
..+.+++..+ . .+.+++++ ++++.||+|||..+..
T Consensus 81 ~~v~~v~~~~~~F~v~t~~~~-~~ak~vIiAtG~~~~~ 117 (305)
T COG0492 81 DEVEKVELEGGPFKVKTDKGT-YEAKAVIIATGAGARK 117 (305)
T ss_pred EEEEEEeecCceEEEEECCCe-EEEeEEEECcCCcccC
Confidence 6777777666 4 78888887 9999999999987654
No 296
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.64 E-value=0.00035 Score=66.82 Aligned_cols=97 Identities=19% Similarity=0.231 Sum_probs=62.7
Q ss_pred CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccc-------cCc-----------hhH----------HHH---
Q 017664 140 NSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEF-------VGS-----------RAS----------QIA--- 188 (368)
Q Consensus 140 ~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~-------~~~-----------~~~----------~~~--- 188 (368)
-.++|||+|+.|+.+|..+.+ .+.+|.++++.+..+.. .+. .+. ..+
T Consensus 4 yDvvVIGgGpaGl~aA~~la~--~g~~V~lie~~~~~~GG~~~~~gcip~k~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (441)
T PRK08010 4 YQAVIIGFGKAGKTLAVTLAK--AGWRVALIEQSNAMYGGTCINIGCIPTKTLVHDAQQHTDFVRAIQRKNEVVNFLRNK 81 (441)
T ss_pred CCEEEECCCHhHHHHHHHHHH--CCCeEEEEcCCCCccceeEeeccccchHHHHHHhccCCCHHHHHHHHHHHHHHHHHh
Confidence 379999999999999999985 47899999986432100 000 111 111
Q ss_pred -HHHHH-cCCcEEEecceeeecccCCCeEEcCCCc-EEecCEEEEccCCCCCch
Q 017664 189 -LDWLT-SKKVEVILNQSVTLNTISDGLIETSSGE-TIDTDCHFMCTGKAMASS 239 (368)
Q Consensus 189 -~~~l~-~~gv~i~~~~~v~~i~~~~~~v~~~~g~-~i~~d~vi~a~G~~p~~~ 239 (368)
.+.+. ..|++++.+. +..+....-.+.+.+|+ ++.+|.+|+|||.+|..+
T Consensus 82 ~~~~~~~~~gv~~~~g~-~~~i~~~~~~v~~~~g~~~~~~d~lviATGs~p~~p 134 (441)
T PRK08010 82 NFHNLADMPNIDVIDGQ-AEFINNHSLRVHRPEGNLEIHGEKIFINTGAQTVVP 134 (441)
T ss_pred HHHHHhhcCCcEEEEEE-EEEecCCEEEEEeCCCeEEEEeCEEEEcCCCcCCCC
Confidence 11223 3489998764 44333221156666775 699999999999987543
No 297
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=97.63 E-value=0.00015 Score=69.95 Aligned_cols=89 Identities=21% Similarity=0.338 Sum_probs=65.6
Q ss_pred cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccc---------ccCchhHHHHHHHHHcCCcEEEecceeeec
Q 017664 138 SANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLE---------FVGSRASQIALDWLTSKKVEVILNQSVTLN 208 (368)
Q Consensus 138 ~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~---------~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i 208 (368)
.+++++|||+|+.|+.+|..+.+ .+.+|+++++.+.+.. ..+.++.....+.+++.|+++++++.+..
T Consensus 142 ~~~~VvIIGaGpAGl~aA~~l~~--~G~~V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~- 218 (471)
T PRK12810 142 TGKKVAVVGSGPAGLAAADQLAR--AGHKVTVFERADRIGGLLRYGIPDFKLEKEVIDRRIELMEAEGIEFRTNVEVGK- 218 (471)
T ss_pred CCCEEEEECcCHHHHHHHHHHHh--CCCcEEEEecCCCCCceeeecCCcccCCHHHHHHHHHHHHhCCcEEEeCCEECC-
Confidence 35799999999999999999985 5889999998765421 12344555666788999999999987631
Q ss_pred ccCCCeEEcCCCcEEecCEEEEccCCC
Q 017664 209 TISDGLIETSSGETIDTDCHFMCTGKA 235 (368)
Q Consensus 209 ~~~~~~v~~~~g~~i~~d~vi~a~G~~ 235 (368)
... . +.....+|.+|+|||..
T Consensus 219 ~~~-----~-~~~~~~~d~vvlAtGa~ 239 (471)
T PRK12810 219 DIT-----A-EELLAEYDAVFLGTGAY 239 (471)
T ss_pred cCC-----H-HHHHhhCCEEEEecCCC
Confidence 100 0 11135799999999987
No 298
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=97.63 E-value=6.8e-05 Score=71.48 Aligned_cols=60 Identities=18% Similarity=0.179 Sum_probs=44.0
Q ss_pred chhHHHHHHHHHcCCcEEEecceeeecccC--CC---eEEcC-CCcEEecCEEEEccC-CCCCchhh
Q 017664 182 SRASQIALDWLTSKKVEVILNQSVTLNTIS--DG---LIETS-SGETIDTDCHFMCTG-KAMASSWL 241 (368)
Q Consensus 182 ~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~--~~---~v~~~-~g~~i~~d~vi~a~G-~~p~~~~~ 241 (368)
..+.+.+.+.+++.|++++++++++++..+ ++ .+... ++.++.++.||+|+| +..|.+++
T Consensus 123 ~~l~~~L~~~a~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~~~~~i~ak~VIlAtGG~~~n~~~~ 189 (432)
T TIGR02485 123 KALTNALYSSAERLGVEIRYGIAVDRIPPEAFDGAHDGPLTTVGTHRITTQALVLAAGGLGANRDWL 189 (432)
T ss_pred HHHHHHHHHHHHHcCCEEEeCCEEEEEEecCCCCeEEEEEEcCCcEEEEcCEEEEcCCCcccCHHHH
Confidence 356777888899999999999999988765 34 23333 345899999999999 33444443
No 299
>PRK06116 glutathione reductase; Validated
Probab=97.62 E-value=0.00014 Score=69.69 Aligned_cols=97 Identities=14% Similarity=0.157 Sum_probs=62.9
Q ss_pred CCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeeccceeeeecccccccceeecccccCceeEEEe-EEEEeec-
Q 017664 16 KKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITWASLRAVVEPSFAVRSVINHGDYLSNVKIVVS-TAVSITD- 92 (368)
Q Consensus 16 ~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~- 92 (368)
..+++|||+|+.|+-+|..|+ .|.+|+++++++.+... ..+........... ..+++++.. .+..++.
T Consensus 167 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~-------~~~~~~~~l~~~L~--~~GV~i~~~~~V~~i~~~ 237 (450)
T PRK06116 167 PKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAPLRG-------FDPDIRETLVEEME--KKGIRLHTNAVPKAVEKN 237 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCccc-------cCHHHHHHHHHHHH--HCCcEEECCCEEEEEEEc
Confidence 468999999999999999987 49999999998754211 11111110000011 125555432 4444432
Q ss_pred --c--EEEecCCeEEEecEEEEecCCCCCCCCc
Q 017664 93 --T--EVVTAGGQTFVYDYVVVATGHVESVPKS 121 (368)
Q Consensus 93 --~--~v~~~~g~~~~~d~lvlAtG~~~~~p~~ 121 (368)
. .+.+.+++.+++|.+++|+|..|+...+
T Consensus 238 ~~g~~~v~~~~g~~i~~D~Vv~a~G~~p~~~~l 270 (450)
T PRK06116 238 ADGSLTLTLEDGETLTVDCLIWAIGREPNTDGL 270 (450)
T ss_pred CCceEEEEEcCCcEEEeCEEEEeeCCCcCCCCC
Confidence 1 3556678889999999999999887653
No 300
>PRK06370 mercuric reductase; Validated
Probab=97.62 E-value=0.00022 Score=68.65 Aligned_cols=96 Identities=17% Similarity=0.204 Sum_probs=61.1
Q ss_pred CCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeeccceeeeecccccccceeecccccCceeEEEe-EEEEeecc
Q 017664 16 KKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITWASLRAVVEPSFAVRSVINHGDYLSNVKIVVS-TAVSITDT 93 (368)
Q Consensus 16 ~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 93 (368)
..+++|||+|+.|+.+|..|+ .|.+|+++++.+.+.... .+........... ..+++++.. .+..++..
T Consensus 171 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~~-------~~~~~~~l~~~l~--~~GV~i~~~~~V~~i~~~ 241 (463)
T PRK06370 171 PEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLPRE-------DEDVAAAVREILE--REGIDVRLNAECIRVERD 241 (463)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCCccc-------CHHHHHHHHHHHH--hCCCEEEeCCEEEEEEEc
Confidence 468999999999999999987 599999999987653110 1111100000011 125666543 45555432
Q ss_pred ----EEEe---cCCeEEEecEEEEecCCCCCCCC
Q 017664 94 ----EVVT---AGGQTFVYDYVVVATGHVESVPK 120 (368)
Q Consensus 94 ----~v~~---~~g~~~~~d~lvlAtG~~~~~p~ 120 (368)
.+.. .++..+++|.+++|+|..|+...
T Consensus 242 ~~~~~v~~~~~~~~~~i~~D~Vi~A~G~~pn~~~ 275 (463)
T PRK06370 242 GDGIAVGLDCNGGAPEITGSHILVAVGRVPNTDD 275 (463)
T ss_pred CCEEEEEEEeCCCceEEEeCEEEECcCCCcCCCC
Confidence 2322 23457999999999999988763
No 301
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=97.62 E-value=0.00016 Score=69.15 Aligned_cols=96 Identities=15% Similarity=0.108 Sum_probs=60.8
Q ss_pred CCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeeccceeeeecccccccceeecccccCceeEEEe-EEEEeec-
Q 017664 16 KKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITWASLRAVVEPSFAVRSVINHGDYLSNVKIVVS-TAVSITD- 92 (368)
Q Consensus 16 ~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~- 92 (368)
..+++|||||+.|+-+|..|+ .|.+|+|+++.+.+... .++........... ..+++++.. .+..+..
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il~~-------~d~~~~~~~~~~l~--~~gI~i~~~~~v~~i~~~ 236 (450)
T TIGR01421 166 PKRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVLRS-------FDSMISETITEEYE--KEGINVHKLSKPVKVEKT 236 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCcc-------cCHHHHHHHHHHHH--HcCCEEEcCCEEEEEEEe
Confidence 468999999999999999987 49999999998754211 11111111000011 124555433 3333332
Q ss_pred ----cEEEecCC-eEEEecEEEEecCCCCCCCC
Q 017664 93 ----TEVVTAGG-QTFVYDYVVVATGHVESVPK 120 (368)
Q Consensus 93 ----~~v~~~~g-~~~~~d~lvlAtG~~~~~p~ 120 (368)
..+.+.++ ..+.+|.+++|+|..|+...
T Consensus 237 ~~~~~~v~~~~g~~~i~~D~vi~a~G~~pn~~~ 269 (450)
T TIGR01421 237 VEGKLVIHFEDGKSIDDVDELIWAIGRKPNTKG 269 (450)
T ss_pred CCceEEEEECCCcEEEEcCEEEEeeCCCcCccc
Confidence 13455566 57999999999999988764
No 302
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=97.58 E-value=0.00046 Score=66.42 Aligned_cols=95 Identities=25% Similarity=0.318 Sum_probs=64.5
Q ss_pred CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcc--------ccc--------------------ccCc---------
Q 017664 140 NSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPK--------LLE--------------------FVGS--------- 182 (368)
Q Consensus 140 ~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~--------~l~--------------------~~~~--------- 182 (368)
++++|||+|+.|+.+|..+.+ .+.+|.++++..- ..| ....
T Consensus 2 ~~vvviG~G~~G~~~a~~~~~--~g~~v~~~e~~~~gG~c~~~gciPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~ 79 (466)
T PRK07845 2 TRIVIIGGGPGGYEAALVAAQ--LGADVTVIERDGLGGAAVLTDCVPSKTLIATAEVRTELRRAAELGIRFIDDGEARVD 79 (466)
T ss_pred CcEEEECCCHHHHHHHHHHHh--CCCeEEEEEccCCCCcccccCCcchHHHHHHHHHHHHHHHHHhCCcccccCcccccC
Confidence 579999999999999999985 4889999997540 000 0000
Q ss_pred --h-----------hHHHHHHHHHcCCcEEEecceeeecc--cCCC--eEEcCCCc--EEecCEEEEccCCCCC
Q 017664 183 --R-----------ASQIALDWLTSKKVEVILNQSVTLNT--ISDG--LIETSSGE--TIDTDCHFMCTGKAMA 237 (368)
Q Consensus 183 --~-----------~~~~~~~~l~~~gv~i~~~~~v~~i~--~~~~--~v~~~~g~--~i~~d~vi~a~G~~p~ 237 (368)
. ....+.+.+++.||+++.++- ..++ .+++ .+.+.+|+ ++.+|.+|+|||.+|.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g~~-~~~~~~~~~~~v~V~~~~g~~~~~~~d~lViATGs~p~ 152 (466)
T PRK07845 80 LPAVNARVKALAAAQSADIRARLEREGVRVIAGRG-RLIDPGLGPHRVKVTTADGGEETLDADVVLIATGASPR 152 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEE-EEeecccCCCEEEEEeCCCceEEEecCEEEEcCCCCCC
Confidence 0 012234556778999988753 3222 2333 45566775 7999999999999985
No 303
>PLN02487 zeta-carotene desaturase
Probab=97.58 E-value=9.6e-05 Score=72.17 Aligned_cols=53 Identities=13% Similarity=0.112 Sum_probs=42.7
Q ss_pred hhHHHHHHHHHcCCcEEEecceeeecccCC---C-----eEEc---CCCcEEecCEEEEccCCC
Q 017664 183 RASQIALDWLTSKKVEVILNQSVTLNTISD---G-----LIET---SSGETIDTDCHFMCTGKA 235 (368)
Q Consensus 183 ~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~---~-----~v~~---~~g~~i~~d~vi~a~G~~ 235 (368)
.+.+.+.+.++++|.++++++.|++|+.+. + .+++ .+++.+++|.||++++..
T Consensus 296 ~l~~pl~~~L~~~Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~~~~~~~~~aD~VV~A~p~~ 359 (569)
T PLN02487 296 RLSGPIAKYITDRGGRFHLRWGCREILYDKSPDGETYVTGLKVSKATEKEIVKADAYVAACDVP 359 (569)
T ss_pred HHHHHHHHHHHHcCCEEEeCCceEEEEEecCCCCceeEEEEEEecCCCceEEECCEEEECCCHH
Confidence 478889999999999999999999998752 1 3455 344579999999999854
No 304
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=97.58 E-value=4.3e-05 Score=66.86 Aligned_cols=105 Identities=20% Similarity=0.233 Sum_probs=72.8
Q ss_pred cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccc--ccc---CchhHHH-----HHHHHHcCCcEEEecceeee
Q 017664 138 SANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLL--EFV---GSRASQI-----ALDWLTSKKVEVILNQSVTL 207 (368)
Q Consensus 138 ~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l--~~~---~~~~~~~-----~~~~l~~~gv~i~~~~~v~~ 207 (368)
+.-+++|||||.-|+-+|..+.++.+..+|-++++.+... |.+ ...+... -+..+--.|.+.+. .+|.+
T Consensus 38 ~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~HyYQPgfTLvGgGl~~l~~srr~~a~liP~~a~wi~-ekv~~ 116 (446)
T KOG3851|consen 38 KHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAEDHYYQPGFTLVGGGLKSLDSSRRKQASLIPKGATWIK-EKVKE 116 (446)
T ss_pred cceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchhhcccCcceEEeccchhhhhhccCcccccccCCcHHHH-HHHHh
Confidence 4568999999999999999999888888999998776421 111 1111100 01112223444433 56777
Q ss_pred cccCCCeEEcCCCcEEecCEEEEccCCCCCchhhhc
Q 017664 208 NTISDGLIETSSGETIDTDCHFMCTGKAMASSWLRE 243 (368)
Q Consensus 208 i~~~~~~v~~~~g~~i~~d~vi~a~G~~p~~~~~~~ 243 (368)
.+.+++.|.+.+|++|.+|++|+|+|..-+.+.++.
T Consensus 117 f~P~~N~v~t~gg~eIsYdylviA~Giql~y~~IkG 152 (446)
T KOG3851|consen 117 FNPDKNTVVTRGGEEISYDYLVIAMGIQLDYGKIKG 152 (446)
T ss_pred cCCCcCeEEccCCcEEeeeeEeeeeeceeccchhcC
Confidence 778888999999999999999999998866655443
No 305
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.57 E-value=0.00023 Score=68.49 Aligned_cols=96 Identities=24% Similarity=0.266 Sum_probs=60.4
Q ss_pred CCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeeccceeeeecccccccceeecccccCceeEEEe-EEEEeecc
Q 017664 16 KKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITWASLRAVVEPSFAVRSVINHGDYLSNVKIVVS-TAVSITDT 93 (368)
Q Consensus 16 ~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 93 (368)
..+++|||+|+.|+.+|..|+ .|.+|+|+|+.+.+.... ++...........+ .+++++.. .+..++..
T Consensus 172 ~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~~~-------d~~~~~~l~~~l~~--~gV~i~~~~~v~~i~~~ 242 (466)
T PRK07818 172 PKSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRALPNE-------DAEVSKEIAKQYKK--LGVKILTGTKVESIDDN 242 (466)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcCCcc-------CHHHHHHHHHHHHH--CCCEEEECCEEEEEEEe
Confidence 468999999999999999988 499999999877542111 11111000001111 25666533 44455321
Q ss_pred ----EEEec--CC--eEEEecEEEEecCCCCCCCC
Q 017664 94 ----EVVTA--GG--QTFVYDYVVVATGHVESVPK 120 (368)
Q Consensus 94 ----~v~~~--~g--~~~~~d~lvlAtG~~~~~p~ 120 (368)
.+.+. ++ ..+++|.+++|+|..|+...
T Consensus 243 ~~~~~v~~~~~~g~~~~i~~D~vi~a~G~~pn~~~ 277 (466)
T PRK07818 243 GSKVTVTVSKKDGKAQELEADKVLQAIGFAPRVEG 277 (466)
T ss_pred CCeEEEEEEecCCCeEEEEeCEEEECcCcccCCCC
Confidence 23332 45 47999999999999988764
No 306
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=97.56 E-value=0.00061 Score=66.24 Aligned_cols=133 Identities=17% Similarity=0.210 Sum_probs=80.0
Q ss_pred CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccc-------------------------------c--------
Q 017664 140 NSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEF-------------------------------V-------- 180 (368)
Q Consensus 140 ~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~-------------------------------~-------- 180 (368)
|+|+|||+|++|+-.+..+.+ .|.+++++++++.+..- +
T Consensus 2 krVaVIGaG~sGL~a~k~l~e--~g~~~~~fE~~~~iGG~W~~~~~~~~g~~~~y~sl~~n~sk~~~~fsdfp~p~~~p~ 79 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLE--EGLEVTCFEKSDDIGGLWRYTENPEDGRSSVYDSLHTNTSKEMMAFSDFPFPEDYPD 79 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHH--TT-EEEEEESSSSSSGGGCHSTTCCCSEGGGSTT-B-SS-GGGSCCTTS-HCCCCSS
T ss_pred CEEEEECccHHHHHHHHHHHH--CCCCCeEEecCCCCCccCeeCCcCCCCccccccceEEeeCchHhcCCCcCCCCCCCC
Confidence 799999999999999999886 48899999987643110 0
Q ss_pred ---CchhHHHHHHHHHcCCc--EEEecceeeecccCC-----C--eEEcCC-Cc--EEecCEEEEccCCC--CCchhhhc
Q 017664 181 ---GSRASQIALDWLTSKKV--EVILNQSVTLNTISD-----G--LIETSS-GE--TIDTDCHFMCTGKA--MASSWLRE 243 (368)
Q Consensus 181 ---~~~~~~~~~~~l~~~gv--~i~~~~~v~~i~~~~-----~--~v~~~~-g~--~i~~d~vi~a~G~~--p~~~~~~~ 243 (368)
..++.++++++.+..++ .|+++++|.+++..+ + .|.+.+ |+ +..+|.|++|+|.- |+.+.-.-
T Consensus 80 f~~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~~~~~fD~VvvatG~~~~P~~P~~~~ 159 (531)
T PF00743_consen 80 FPSHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTENDGKEETEEFDAVVVATGHFSKPNIPEPSF 159 (531)
T ss_dssp SEBHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTTTEEEEEEECEEEEEE-SSSCESB-----
T ss_pred CCCHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecCCeEEEEEeCeEEEcCCCcCCCCCChhhh
Confidence 13456667777777776 588899999886532 2 565543 42 45699999999964 44332111
Q ss_pred cccccccCCCCcEEeCCCeeec---CCCCeEEecccC
Q 017664 244 TILKDSLDGRGRLMVDENLRVR---GFKNVFAIGDIT 277 (368)
Q Consensus 244 ~~l~~~~~~~g~i~vd~~~~~~---~~~~ifa~GD~~ 277 (368)
.+++ .-+|.+.=...++.. ..++|-++|-..
T Consensus 160 ~G~e---~F~G~i~HS~~yr~~~~f~gKrVlVVG~g~ 193 (531)
T PF00743_consen 160 PGLE---KFKGEIIHSKDYRDPEPFKGKRVLVVGGGN 193 (531)
T ss_dssp CTGG---GHCSEEEEGGG--TGGGGTTSEEEEESSSH
T ss_pred hhhh---cCCeeEEccccCcChhhcCCCEEEEEeCCH
Confidence 2321 114555443333332 367888888754
No 307
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=97.56 E-value=0.0014 Score=57.87 Aligned_cols=48 Identities=23% Similarity=0.369 Sum_probs=38.8
Q ss_pred eCCCeeecCCCCeEEecccCCCCccchHHHHHHHHHHHHHHHHHHHcCCCC
Q 017664 258 VDENLRVRGFKNVFAIGDITDIPEIKQGYLAQKHALVTAKNLKKLMMGRNK 308 (368)
Q Consensus 258 vd~~~~~~~~~~ifa~GD~~~~~~~~~~~~a~~~g~~aa~~i~~~l~g~~~ 308 (368)
.|+++|.++.||+|++|-..+.-. -..+...|.+|+.|.++...|.++
T Consensus 325 L~~tl~lk~~p~l~fAGQitG~EG---YveSaA~Gllag~naa~~~~g~~~ 372 (439)
T COG1206 325 LDPTLQLKKRPNLFFAGQITGVEG---YVESAASGLLAGINAARLALGEEP 372 (439)
T ss_pred hhHHhhcccCCCcEEeeeeecchh---hhHHhhhhHHHhhHHHHHhcCCCC
Confidence 456788888999999999987632 246778899999999998888764
No 308
>PLN02507 glutathione reductase
Probab=97.56 E-value=0.00024 Score=68.90 Aligned_cols=96 Identities=25% Similarity=0.266 Sum_probs=61.3
Q ss_pred CCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeeccceeeeecccccccceeecccccCceeEEEe-EEEEeec-
Q 017664 16 KKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITWASLRAVVEPSFAVRSVINHGDYLSNVKIVVS-TAVSITD- 92 (368)
Q Consensus 16 ~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~- 92 (368)
..+++|||+|+.|+-.|..|+ .|.+|+|+++.+.... . .++...........+ .+++++.. .+..++.
T Consensus 203 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~l~---~----~d~~~~~~l~~~l~~--~GI~i~~~~~V~~i~~~ 273 (499)
T PLN02507 203 PKRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPLR---G----FDDEMRAVVARNLEG--RGINLHPRTNLTQLTKT 273 (499)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCcCc---c----cCHHHHHHHHHHHHh--CCCEEEeCCEEEEEEEe
Confidence 468999999999999999887 4999999998774311 0 111111000000111 25555433 3444432
Q ss_pred -c--EEEecCCeEEEecEEEEecCCCCCCCC
Q 017664 93 -T--EVVTAGGQTFVYDYVVVATGHVESVPK 120 (368)
Q Consensus 93 -~--~v~~~~g~~~~~d~lvlAtG~~~~~p~ 120 (368)
+ .+.+.++..+++|.+++|+|..|+...
T Consensus 274 ~~~~~v~~~~g~~i~~D~vl~a~G~~pn~~~ 304 (499)
T PLN02507 274 EGGIKVITDHGEEFVADVVLFATGRAPNTKR 304 (499)
T ss_pred CCeEEEEECCCcEEEcCEEEEeecCCCCCCC
Confidence 2 355567778999999999999988765
No 309
>PRK08244 hypothetical protein; Provisional
Probab=97.55 E-value=0.00063 Score=66.08 Aligned_cols=95 Identities=21% Similarity=0.308 Sum_probs=68.8
Q ss_pred CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccc-----------------------------------------
Q 017664 140 NSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLE----------------------------------------- 178 (368)
Q Consensus 140 ~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~----------------------------------------- 178 (368)
..|+|||+|++|+-+|..|.+ .+.+|+++++.+...+
T Consensus 3 ~dVlIVGaGpaGl~lA~~L~~--~G~~v~viEr~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~~ 80 (493)
T PRK08244 3 YEVIIIGGGPVGLMLASELAL--AGVKTCVIERLKETVPYSKALTLHPRTLEILDMRGLLERFLEKGRKLPSGHFAGLDT 80 (493)
T ss_pred CCEEEECCCHHHHHHHHHHHH--CCCcEEEEecCCCCCCCcceeEecHHHHHHHHhcCcHHHHHhhcccccceEEecccc
Confidence 469999999999999999985 5889999997642100
Q ss_pred --cc--------------CchhHHHHHHHHHcCCcEEEecceeeecccCCC--eEEc--CCC-cEEecCEEEEccCCCC
Q 017664 179 --FV--------------GSRASQIALDWLTSKKVEVILNQSVTLNTISDG--LIET--SSG-ETIDTDCHFMCTGKAM 236 (368)
Q Consensus 179 --~~--------------~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~--~v~~--~~g-~~i~~d~vi~a~G~~p 236 (368)
.+ ...+.+.+.+.+++.|++++.++++.+++.+++ .+.+ .+| +++++|++|.|.|...
T Consensus 81 ~~~~~~~~~~~~~~~~i~q~~le~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~a~~vVgADG~~S 159 (493)
T PRK08244 81 RLDFSALDTSSNYTLFLPQAETEKVLEEHARSLGVEIFRGAEVLAVRQDGDGVEVVVRGPDGLRTLTSSYVVGADGAGS 159 (493)
T ss_pred cCCcccCCCCCCcEEEecHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEcCCeEEEEEEeCCccEEEEeCEEEECCCCCh
Confidence 00 012234455667778999999999998876655 3333 345 4799999999999764
No 310
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=97.55 E-value=8.4e-05 Score=72.99 Aligned_cols=36 Identities=25% Similarity=0.505 Sum_probs=32.6
Q ss_pred CCCCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCC
Q 017664 13 LVEKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKE 48 (368)
Q Consensus 13 ~~~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~ 48 (368)
|..+.||||||+|.|||+||..++ .|.+|+||||.+
T Consensus 1 ~~~~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~ 37 (549)
T PRK12834 1 MAMDADVIVVGAGLAGLVAAAELADAGKRVLLLDQEN 37 (549)
T ss_pred CCccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 346789999999999999999987 599999999998
No 311
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=97.55 E-value=8.8e-05 Score=65.13 Aligned_cols=39 Identities=13% Similarity=0.266 Sum_probs=35.2
Q ss_pred CCcEEEECCChHHHHHHHHhhc-CCcEEEEcCCCceeeec
Q 017664 16 KKKVVVIGGGVGGSLLAYHIQS-FADVVLIDEKEYFEITW 54 (368)
Q Consensus 16 ~~~vvIIGaG~aGl~aA~~L~~-g~~v~lie~~~~~~~~~ 54 (368)
++|++|||||.+|+..|..|++ |.+|+||||.+++|++.
T Consensus 1 ~fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIGGNa 40 (374)
T COG0562 1 MFDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGGNA 40 (374)
T ss_pred CCcEEEECCchhHHHHHHHHHHcCCEEEEEeccccCCCcc
Confidence 4799999999999999997775 99999999999998664
No 312
>PTZ00052 thioredoxin reductase; Provisional
Probab=97.54 E-value=0.00025 Score=68.79 Aligned_cols=96 Identities=18% Similarity=0.204 Sum_probs=59.4
Q ss_pred CCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeeccceeeeecccccccceeecccccCceeEEEe-EEEEee--
Q 017664 16 KKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITWASLRAVVEPSFAVRSVINHGDYLSNVKIVVS-TAVSIT-- 91 (368)
Q Consensus 16 ~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-- 91 (368)
..+++|||||+.|+-+|..|+ .|.+|+|+++...+. .+ ++...........+ .+++++.. .+..+.
T Consensus 182 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~l~----~~----d~~~~~~l~~~l~~--~GV~i~~~~~v~~v~~~ 251 (499)
T PTZ00052 182 PGKTLIVGASYIGLETAGFLNELGFDVTVAVRSIPLR----GF----DRQCSEKVVEYMKE--QGTLFLEGVVPINIEKM 251 (499)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCcccc----cC----CHHHHHHHHHHHHH--cCCEEEcCCeEEEEEEc
Confidence 358999999999999999987 599999998743211 11 11111110001111 14555433 222232
Q ss_pred -cc-EEEecCCeEEEecEEEEecCCCCCCCCc
Q 017664 92 -DT-EVVTAGGQTFVYDYVVVATGHVESVPKS 121 (368)
Q Consensus 92 -~~-~v~~~~g~~~~~d~lvlAtG~~~~~p~~ 121 (368)
.. .+.+.+++.+.+|.+++|+|..|+....
T Consensus 252 ~~~~~v~~~~g~~i~~D~vl~a~G~~pn~~~l 283 (499)
T PTZ00052 252 DDKIKVLFSDGTTELFDTVLYATGRKPDIKGL 283 (499)
T ss_pred CCeEEEEECCCCEEEcCEEEEeeCCCCCcccc
Confidence 11 4555678889999999999999887653
No 313
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=97.54 E-value=0.00012 Score=51.88 Aligned_cols=34 Identities=38% Similarity=0.486 Sum_probs=31.0
Q ss_pred cEEEECCChHHHHHHHHhh-cCCcEEEEcCCCcee
Q 017664 18 KVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFE 51 (368)
Q Consensus 18 ~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~ 51 (368)
+++|||||+.|+-+|..|+ .+.+|+|+++++.+.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~ 35 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLL 35 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhh
Confidence 5899999999999999998 599999999998764
No 314
>PRK07121 hypothetical protein; Validated
Probab=97.54 E-value=0.00011 Score=71.36 Aligned_cols=37 Identities=24% Similarity=0.320 Sum_probs=33.2
Q ss_pred CCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCcee
Q 017664 15 EKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFE 51 (368)
Q Consensus 15 ~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~ 51 (368)
..+||||||+|.||++||.+++ .|.+|+||||.+..+
T Consensus 19 ~~~DVvVVGaG~AGl~AA~~aae~G~~VillEK~~~~g 56 (492)
T PRK07121 19 DEADVVVVGFGAAGACAAIEAAAAGARVLVLERAAGAG 56 (492)
T ss_pred CccCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCC
Confidence 4689999999999999999987 599999999998754
No 315
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.54 E-value=8.6e-05 Score=73.38 Aligned_cols=52 Identities=21% Similarity=0.203 Sum_probs=39.6
Q ss_pred CCcEEeCCCeeecCCCCeEEecccCCCCc------cchHHHHHHHHHHHHHHHHHHHcC
Q 017664 253 RGRLMVDENLRVRGFKNVFAIGDITDIPE------IKQGYLAQKHALVTAKNLKKLMMG 305 (368)
Q Consensus 253 ~g~i~vd~~~~~~~~~~ifa~GD~~~~~~------~~~~~~a~~~g~~aa~~i~~~l~g 305 (368)
.|.|.||.+.++ +.|++||+|+|++... -.....|.-.|+.|+++++..+.+
T Consensus 355 ~GGi~vd~~~~t-~I~GLyAaGE~~~g~hGanrlggnsl~~~lv~Gr~Ag~~aa~~~~~ 412 (589)
T PRK08641 355 MGGLWVDYDQMT-NIPGLFAAGECDYSYHGANRLGANSLLSAIYGGMVAGPNAVEYIKG 412 (589)
T ss_pred CCCeEECCCCCe-ECCCEEECcccccCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhh
Confidence 478999999888 6999999999974311 123456888899999998877643
No 316
>PRK09126 hypothetical protein; Provisional
Probab=97.53 E-value=0.00084 Score=63.13 Aligned_cols=96 Identities=20% Similarity=0.328 Sum_probs=68.6
Q ss_pred CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccc------------------------------------c-----
Q 017664 140 NSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLL------------------------------------E----- 178 (368)
Q Consensus 140 ~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l------------------------------------~----- 178 (368)
.+|+|||+|++|+-+|..|.+ .|.+|+++++.+..- +
T Consensus 4 ~dviIvGgG~aGl~~A~~L~~--~G~~v~v~E~~~~~~~~~~~~~g~~i~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~ 81 (392)
T PRK09126 4 SDIVVVGAGPAGLSFARSLAG--SGLKVTLIERQPLAALADPAFDGREIALTHASREILQRLGAWDRIPEDEISPLRDAK 81 (392)
T ss_pred ccEEEECcCHHHHHHHHHHHh--CCCcEEEEeCCCcccccCCCCchhHHHhhHHHHHHHHHCCChhhhccccCCccceEE
Confidence 469999999999999999985 488999998764210 0
Q ss_pred ----------ccCc---------------hhHHHHHHHH-HcCCcEEEecceeeecccCCC--eEEcCCCcEEecCEEEE
Q 017664 179 ----------FVGS---------------RASQIALDWL-TSKKVEVILNQSVTLNTISDG--LIETSSGETIDTDCHFM 230 (368)
Q Consensus 179 ----------~~~~---------------~~~~~~~~~l-~~~gv~i~~~~~v~~i~~~~~--~v~~~~g~~i~~d~vi~ 230 (368)
.++. .+.+.+.+.+ +..|++++.++++..++.+++ .+.+.+|+++++|++|.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~g~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~a~~vI~ 161 (392)
T PRK09126 82 VLNGRSPFALTFDARGRGADALGYLVPNHLIRRAAYEAVSQQDGIELLTGTRVTAVRTDDDGAQVTLANGRRLTARLLVA 161 (392)
T ss_pred EEcCCCCceeEeehhhcCCCcceEEEeHHHHHHHHHHHHhhCCCcEEEcCCeEEEEEEcCCeEEEEEcCCCEEEeCEEEE
Confidence 0000 0111122233 446899999999998876655 67778888999999999
Q ss_pred ccCCCCC
Q 017664 231 CTGKAMA 237 (368)
Q Consensus 231 a~G~~p~ 237 (368)
|.|....
T Consensus 162 AdG~~S~ 168 (392)
T PRK09126 162 ADSRFSA 168 (392)
T ss_pred eCCCCch
Confidence 9998654
No 317
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=97.52 E-value=0.00011 Score=74.07 Aligned_cols=41 Identities=27% Similarity=0.311 Sum_probs=36.2
Q ss_pred CCCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeec
Q 017664 14 VEKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITW 54 (368)
Q Consensus 14 ~~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~ 54 (368)
....+|+|||||++||+||+.|. +|++|+|+|+++.+|+..
T Consensus 236 ~~~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~GGr~ 277 (808)
T PLN02328 236 VEPANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARPGGRV 277 (808)
T ss_pred CCCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccCCCcc
Confidence 34689999999999999999997 599999999999887553
No 318
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=97.52 E-value=0.0023 Score=61.05 Aligned_cols=132 Identities=19% Similarity=0.272 Sum_probs=81.7
Q ss_pred CCeEEEEcCchhHHHHHHHHhhhCCCCe-EEEEecCccc----------------------cccc----------CchhH
Q 017664 139 ANSVLIVGGGPTGVELAGEIAVDFPDKK-VILVHRGPKL----------------------LEFV----------GSRAS 185 (368)
Q Consensus 139 ~~~v~VvG~g~~~~e~a~~l~~~~~~~~-v~~i~~~~~~----------------------l~~~----------~~~~~ 185 (368)
..+++|||+|++|+-+|..|.++ +.. +.+++++..+ ++++ .+++.
T Consensus 8 ~~~v~IIGaG~sGlaaa~~L~~~--g~~~~~i~Ek~~~~Gg~W~~~ry~~l~~~~p~~~~~~~~~p~~~~~~~~~~~~~~ 85 (443)
T COG2072 8 HTDVAIIGAGQSGLAAAYALKQA--GVPDFVIFEKRDDVGGTWRYNRYPGLRLDSPKWLLGFPFLPFRWDEAFAPFAEIK 85 (443)
T ss_pred cccEEEECCCHHHHHHHHHHHHc--CCCcEEEEEccCCcCCcchhccCCceEECCchheeccCCCccCCcccCCCcccHH
Confidence 46799999999999999999975 444 8888887522 1111 11256
Q ss_pred HHHHHHHHcCCcE--EEecceeeecccCCC----eEEcCCCcE--EecCEEEEccCCC--CCchhhhccccccccCCCCc
Q 017664 186 QIALDWLTSKKVE--VILNQSVTLNTISDG----LIETSSGET--IDTDCHFMCTGKA--MASSWLRETILKDSLDGRGR 255 (368)
Q Consensus 186 ~~~~~~l~~~gv~--i~~~~~v~~i~~~~~----~v~~~~g~~--i~~d~vi~a~G~~--p~~~~~~~~~l~~~~~~~g~ 255 (368)
+++.+++++.++. +..++.|+.+..+++ .|.++++.+ +++|.||+|||.- |..+-+ .+. .+..|.
T Consensus 86 ~y~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~~~~a~~vV~ATG~~~~P~iP~~--~G~---~~f~g~ 160 (443)
T COG2072 86 DYIKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGTGELTADFVVVATGHLSEPYIPDF--AGL---DEFKGR 160 (443)
T ss_pred HHHHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCCeeeEecCEEEEeecCCCCCCCCCC--CCc---cCCCce
Confidence 7778888876654 444555555444433 788888765 5599999999974 322211 121 112343
Q ss_pred EEeCC----CeeecCCCCeEEecccCC
Q 017664 256 LMVDE----NLRVRGFKNVFAIGDITD 278 (368)
Q Consensus 256 i~vd~----~~~~~~~~~ifa~GD~~~ 278 (368)
+.=.. .... ..++|-+||-.++
T Consensus 161 ~~HS~~~~~~~~~-~GKrV~VIG~GaS 186 (443)
T COG2072 161 ILHSADWPNPEDL-RGKRVLVIGAGAS 186 (443)
T ss_pred EEchhcCCCcccc-CCCeEEEECCCcc
Confidence 32211 1222 4689999998764
No 319
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=97.52 E-value=0.00087 Score=62.76 Aligned_cols=94 Identities=17% Similarity=0.235 Sum_probs=68.4
Q ss_pred eEEEEcCchhHHHHHHHHhhhCCC-CeEEEEecCccccc---------c-------------c-----------------
Q 017664 141 SVLIVGGGPTGVELAGEIAVDFPD-KKVILVHRGPKLLE---------F-------------V----------------- 180 (368)
Q Consensus 141 ~v~VvG~g~~~~e~a~~l~~~~~~-~~v~~i~~~~~~l~---------~-------------~----------------- 180 (368)
.|+|||+|++|+-+|..|.+ .+ .+|+++++.+..-+ . .
T Consensus 1 dv~IvGaG~aGl~~A~~L~~--~G~~~v~v~E~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~ 78 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSR--LGKIKIALIEANSPSAAQPGFDARSLALSYGSKQILEKLGLWPKLAPFATPILDIHVS 78 (382)
T ss_pred CEEEECccHHHHHHHHHHhc--CCCceEEEEeCCCccccCCCCCCeeEeccHHHHHHHHHCCChhhhHhhcCccceEEEE
Confidence 48999999999999999985 57 89999987532100 0 0
Q ss_pred C-------------------------chhHHHHHHHHHc-CCcEEEecceeeecccCCC--eEEcCCCcEEecCEEEEcc
Q 017664 181 G-------------------------SRASQIALDWLTS-KKVEVILNQSVTLNTISDG--LIETSSGETIDTDCHFMCT 232 (368)
Q Consensus 181 ~-------------------------~~~~~~~~~~l~~-~gv~i~~~~~v~~i~~~~~--~v~~~~g~~i~~d~vi~a~ 232 (368)
+ ..+.+.+.+.+++ .|++++.+++++.++.+++ .+.+.+|+++.+|+||.|.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vV~Ad 158 (382)
T TIGR01984 79 DQGHFGATHLRASEFGLPALGYVVELADLGQALLSRLALLTNIQLYCPARYKEIIRNQDYVRVTLDNGQQLRAKLLIAAD 158 (382)
T ss_pred cCCCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEEcCCeEEEEEEcCCeEEEEECCCCEEEeeEEEEec
Confidence 0 0112334455555 4999999999998876555 6777888899999999999
Q ss_pred CCCC
Q 017664 233 GKAM 236 (368)
Q Consensus 233 G~~p 236 (368)
|...
T Consensus 159 G~~S 162 (382)
T TIGR01984 159 GANS 162 (382)
T ss_pred CCCh
Confidence 9763
No 320
>PRK05868 hypothetical protein; Validated
Probab=97.52 E-value=0.00074 Score=63.03 Aligned_cols=96 Identities=16% Similarity=0.143 Sum_probs=68.0
Q ss_pred CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccc-----------------------------------------
Q 017664 140 NSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLE----------------------------------------- 178 (368)
Q Consensus 140 ~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~----------------------------------------- 178 (368)
++|+|||+|+.|+-+|..|.+ .+.+|+++++.+.+..
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~--~G~~v~viE~~~~~~~~g~~i~~~~~a~~~L~~lGl~~~~~~~~~~~~~~~~~~~~g 79 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGR--HGYSVTMVERHPGLRPGGQAIDVRGPALDVLERMGLLAAAQEHKTRIRGASFVDRDG 79 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHh--CCCCEEEEcCCCCCCCCceeeeeCchHHHHHHhcCCHHHHHhhccCccceEEEeCCC
Confidence 479999999999999999885 4788888887642200
Q ss_pred ----ccC--c---------h---hHHHHHHHHH---cCCcEEEecceeeecccCCC--eEEcCCCcEEecCEEEEccCCC
Q 017664 179 ----FVG--S---------R---ASQIALDWLT---SKKVEVILNQSVTLNTISDG--LIETSSGETIDTDCHFMCTGKA 235 (368)
Q Consensus 179 ----~~~--~---------~---~~~~~~~~l~---~~gv~i~~~~~v~~i~~~~~--~v~~~~g~~i~~d~vi~a~G~~ 235 (368)
... . . ....+.+.+. ..|++++++++++.++.+++ .+.+.+|+++++|+||-|-|..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~l~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~dg~~~~adlvIgADG~~ 159 (372)
T PRK05868 80 NELFRDTESTPTGGPVNSPDIELLRDDLVELLYGATQPSVEYLFDDSISTLQDDGDSVRVTFERAAAREFDLVIGADGLH 159 (372)
T ss_pred CEEeecccccccCCCCCCceEEEEHHHHHHHHHHhccCCcEEEeCCEEEEEEecCCeEEEEECCCCeEEeCEEEECCCCC
Confidence 000 0 0 0112233332 46899999999998876554 6778899999999999999976
Q ss_pred CC
Q 017664 236 MA 237 (368)
Q Consensus 236 p~ 237 (368)
..
T Consensus 160 S~ 161 (372)
T PRK05868 160 SN 161 (372)
T ss_pred ch
Confidence 43
No 321
>PRK07395 L-aspartate oxidase; Provisional
Probab=97.51 E-value=0.00012 Score=71.82 Aligned_cols=37 Identities=27% Similarity=0.335 Sum_probs=33.2
Q ss_pred CCCCcEEEECCChHHHHHHHHhhcCCcEEEEcCCCce
Q 017664 14 VEKKKVVVIGGGVGGSLLAYHIQSFADVVLIDEKEYF 50 (368)
Q Consensus 14 ~~~~~vvIIGaG~aGl~aA~~L~~g~~v~lie~~~~~ 50 (368)
...+||||||+|.||++||..+++|.+|+||||.+..
T Consensus 7 ~~e~DVlVVG~G~AGl~AAi~A~~G~~V~lieK~~~~ 43 (553)
T PRK07395 7 PSQFDVLVVGSGAAGLYAALCLPSHLRVGLITKDTLK 43 (553)
T ss_pred cccCCEEEECccHHHHHHHHHhhcCCCEEEEEccCCC
Confidence 4568999999999999999999889999999998764
No 322
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.50 E-value=0.00011 Score=72.52 Aligned_cols=35 Identities=20% Similarity=0.275 Sum_probs=31.3
Q ss_pred CCCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCC
Q 017664 14 VEKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKE 48 (368)
Q Consensus 14 ~~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~ 48 (368)
...+||||||+|.|||+||..++ .|.+|+||||..
T Consensus 10 ~~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~vleK~~ 45 (591)
T PRK07057 10 RRKFDVVIVGAGGSGMRASLQLARAGLSVAVLSKVF 45 (591)
T ss_pred cccCCEEEECccHHHHHHHHHHHHCCCcEEEEeccC
Confidence 45689999999999999999887 599999999975
No 323
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.50 E-value=0.0003 Score=70.64 Aligned_cols=90 Identities=24% Similarity=0.276 Sum_probs=65.2
Q ss_pred cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccc-------c--ccCchhHHHHHHHHHcCCcEEEecceeeec
Q 017664 138 SANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLL-------E--FVGSRASQIALDWLTSKKVEVILNQSVTLN 208 (368)
Q Consensus 138 ~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l-------~--~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i 208 (368)
.+++|+|||+|++|+.+|..|.+ .+.+|+++++.+.+. | .++.++.....+.+++.|++++.++.+...
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~--~G~~V~V~E~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~~ 403 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLAR--NGVAVTVYDRHPEIGGLLTFGIPAFKLDKSLLARRREIFSAMGIEFELNCEVGKD 403 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH--CCCeEEEEecCCCCCceeeecCCCccCCHHHHHHHHHHHHHCCeEEECCCEeCCc
Confidence 46899999999999999999985 588999999876532 1 123455555667888999999999876310
Q ss_pred ccCCCeEEcCCCcEEecCEEEEccCCCC
Q 017664 209 TISDGLIETSSGETIDTDCHFMCTGKAM 236 (368)
Q Consensus 209 ~~~~~~v~~~~g~~i~~d~vi~a~G~~p 236 (368)
+...+ ....+|.||+|+|..+
T Consensus 404 ------i~~~~-~~~~~DavilAtGa~~ 424 (654)
T PRK12769 404 ------ISLES-LLEDYDAVFVGVGTYR 424 (654)
T ss_pred ------CCHHH-HHhcCCEEEEeCCCCC
Confidence 11111 1246999999999753
No 324
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=97.50 E-value=0.0011 Score=61.78 Aligned_cols=95 Identities=27% Similarity=0.370 Sum_probs=69.1
Q ss_pred eEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccc--cc-----ccC--------------------------------
Q 017664 141 SVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKL--LE-----FVG-------------------------------- 181 (368)
Q Consensus 141 ~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~--l~-----~~~-------------------------------- 181 (368)
.++|||+|++|.-+|..+.+...+.+|.++++.+.. .. ...
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~~~~~~~tW~~~~~~~~~~~~~v~~~w~~~~v~~~~~~~~~~~~~ 80 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKPPWPNDRTWCFWEKDLGPLDSLVSHRWSGWRVYFPDGSRILIDYP 80 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccccccCCcccccccccccchHHHHheecCceEEEeCCCceEEcccc
Confidence 379999999999999999555678999999876543 00 000
Q ss_pred ------chhHHHHHHHHHcCCcEEEecceeeecccCCC--eEEcCCCcEEecCEEEEccCCCC
Q 017664 182 ------SRASQIALDWLTSKKVEVILNQSVTLNTISDG--LIETSSGETIDTDCHFMCTGKAM 236 (368)
Q Consensus 182 ------~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~--~v~~~~g~~i~~d~vi~a~G~~p 236 (368)
..+.+.+.+.+++.| .+..++.|..++..++ .+.+.+|+++.++.||-|.|..+
T Consensus 81 Y~~i~~~~f~~~l~~~~~~~~-~~~~~~~V~~i~~~~~~~~v~~~~g~~i~a~~VvDa~g~~~ 142 (374)
T PF05834_consen 81 YCMIDRADFYEFLLERAAAGG-VIRLNARVTSIEETGDGVLVVLADGRTIRARVVVDARGPSS 142 (374)
T ss_pred eEEEEHHHHHHHHHHHhhhCC-eEEEccEEEEEEecCceEEEEECCCCEEEeeEEEECCCccc
Confidence 122233445555444 5667788998887766 67899999999999999999654
No 325
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=97.49 E-value=0.0017 Score=52.57 Aligned_cols=92 Identities=20% Similarity=0.292 Sum_probs=59.4
Q ss_pred EEEcCchhHHHHHHHHhhhC---CCCeEEEEecCccc------------------------ccccC-chhH---------
Q 017664 143 LIVGGGPTGVELAGEIAVDF---PDKKVILVHRGPKL------------------------LEFVG-SRAS--------- 185 (368)
Q Consensus 143 ~VvG~g~~~~e~a~~l~~~~---~~~~v~~i~~~~~~------------------------l~~~~-~~~~--------- 185 (368)
+|||+|++|+-++..|.+.. ...+|+++++.+.- .+..+ +.+.
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~G~G~~~~~~~~~~~llN~~a~~~s~~~~~~~~~f~~Wl~~~~~~ 80 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPFGAGGAYRPDQPPSHLLNTPADQMSLFPDDPGDDFVDWLRANGAD 80 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCccccccCCCCCChHHhhcccccccccccccCCCCHHHHHHhcCcc
Confidence 58999999999999988763 45689999875310 00000 1111
Q ss_pred -----------------HHHH----HHHH--cCCcEEE-ecceeeecccCCC--eEEcCCCcEEecCEEEEccCC
Q 017664 186 -----------------QIAL----DWLT--SKKVEVI-LNQSVTLNTISDG--LIETSSGETIDTDCHFMCTGK 234 (368)
Q Consensus 186 -----------------~~~~----~~l~--~~gv~i~-~~~~v~~i~~~~~--~v~~~~g~~i~~d~vi~a~G~ 234 (368)
+++. +.++ ..|+++. ...+|..++..++ .+.+.+|..+.+|.||+|+|.
T Consensus 81 ~~~~~~~~~f~pR~~~G~YL~~~~~~~~~~~~~~i~v~~~~~~V~~i~~~~~~~~v~~~~g~~~~~d~VvLa~Gh 155 (156)
T PF13454_consen 81 EAEEIDPDDFPPRALFGEYLRDRFDRLLARLPAGITVRHVRAEVVDIRRDDDGYRVVTADGQSIRADAVVLATGH 155 (156)
T ss_pred cccccccccCCCHHHHHHHHHHHHHHHHHhhcCCcEEEEEeeEEEEEEEcCCcEEEEECCCCEEEeCEEEECCCC
Confidence 1111 1111 2355543 3457777777655 688899999999999999995
No 326
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=97.49 E-value=9.6e-05 Score=66.66 Aligned_cols=62 Identities=13% Similarity=0.138 Sum_probs=42.5
Q ss_pred HHHHHHHHHcCCcEEEecceeeeccc--CCC---eE--EcCCCc----EEecCEEEEccCCCCCchhhhcccc
Q 017664 185 SQIALDWLTSKKVEVILNQSVTLNTI--SDG---LI--ETSSGE----TIDTDCHFMCTGKAMASSWLRETIL 246 (368)
Q Consensus 185 ~~~~~~~l~~~gv~i~~~~~v~~i~~--~~~---~v--~~~~g~----~i~~d~vi~a~G~~p~~~~~~~~~l 246 (368)
...+...++..|+++++++.|.+|.. +++ .| ...++. .+.++.||+|.|..-.+.+|..+++
T Consensus 196 ~~~L~~a~~~~n~~l~~~~~V~~i~~~~~~~~a~gV~~~~~~~~~~~~~~~ak~VIlaAGai~Tp~LLl~SGi 268 (296)
T PF00732_consen 196 TTYLPPALKRPNLTLLTNARVTRIIFDGDGGRATGVEYVDNDGGVQRRIVAAKEVILAAGAIGTPRLLLRSGI 268 (296)
T ss_dssp HHHHHHHTTTTTEEEEESEEEEEEEEETTSTEEEEEEEEETTTSEEEEEEEEEEEEE-SHHHHHHHHHHHTTE
T ss_pred hcccchhhccCCccEEcCcEEEEEeeeccccceeeeeeeecCCcceeeeccceeEEeccCCCCChhhhccccc
Confidence 34455566666999999999999944 333 33 334443 5678999999997755667777766
No 327
>PRK12839 hypothetical protein; Provisional
Probab=97.49 E-value=0.00014 Score=71.60 Aligned_cols=44 Identities=23% Similarity=0.318 Sum_probs=37.4
Q ss_pred CcCCCCCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeee
Q 017664 10 AAGLVEKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEIT 53 (368)
Q Consensus 10 ~~~~~~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~ 53 (368)
+|.+...+||+|||+|.+|++||..++ +|.+|+|+|++..++..
T Consensus 2 ~~~~~~~~dv~ViG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg~ 46 (572)
T PRK12839 2 TPSMTHTYDVVVVGSGAGGLSAAVAAAYGGAKVLVVEKASTCGGA 46 (572)
T ss_pred CCCcCCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcc
Confidence 355566899999999999999999997 59999999999876543
No 328
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=97.48 E-value=0.00011 Score=70.89 Aligned_cols=36 Identities=19% Similarity=0.373 Sum_probs=32.8
Q ss_pred cEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeee
Q 017664 18 KVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEIT 53 (368)
Q Consensus 18 ~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~ 53 (368)
+|+|||||++||++|+.|+ +|++|+|+|+++.+|+.
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~~GG~ 37 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFIGGK 37 (474)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCce
Confidence 5899999999999999998 49999999999988754
No 329
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.47 E-value=0.00064 Score=65.51 Aligned_cols=93 Identities=19% Similarity=0.238 Sum_probs=62.2
Q ss_pred CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccc------cCc-------------------------------
Q 017664 140 NSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEF------VGS------------------------------- 182 (368)
Q Consensus 140 ~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~------~~~------------------------------- 182 (368)
..++|||+|+.|+.+|..+++ .+.+|.++++.+.+... .+.
T Consensus 5 ~DvvVIG~GpaG~~aA~~aa~--~G~~V~lie~~~~~GG~c~n~gciP~K~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~ 82 (471)
T PRK06467 5 TQVVVLGAGPAGYSAAFRAAD--LGLETVCVERYSTLGGVCLNVGCIPSKALLHVAKVIEEAKALAEHGIVFGEPKIDID 82 (471)
T ss_pred ceEEEECCCHHHHHHHHHHHH--CCCcEEEEecCCcccccccCCCcccHHHHHHHHHHHHHHhhhhhcCcccCCCCcCHH
Confidence 479999999999999999885 58999999976432100 000
Q ss_pred hhH-----------HHHHHHHHcCCcEEEecceeeecccCCC--eEEcCCC--cEEecCEEEEccCCCCC
Q 017664 183 RAS-----------QIALDWLTSKKVEVILNQSVTLNTISDG--LIETSSG--ETIDTDCHFMCTGKAMA 237 (368)
Q Consensus 183 ~~~-----------~~~~~~l~~~gv~i~~~~~v~~i~~~~~--~v~~~~g--~~i~~d~vi~a~G~~p~ 237 (368)
.+. ..+...+++.||+++.++-. .+ +.+ .+...+| +++.+|.+|+|||.+|.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~a~-~~--~~~~v~v~~~~g~~~~~~~d~lViATGs~p~ 149 (471)
T PRK06467 83 KMRARKEKVVKQLTGGLAGMAKGRKVTVVNGLGK-FT--GGNTLEVTGEDGKTTVIEFDNAIIAAGSRPI 149 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEE-Ec--cCCEEEEecCCCceEEEEcCEEEEeCCCCCC
Confidence 010 01123456779999987532 22 233 4555566 47999999999999875
No 330
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=97.47 E-value=0.00012 Score=71.28 Aligned_cols=37 Identities=32% Similarity=0.456 Sum_probs=32.7
Q ss_pred CCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceee
Q 017664 15 EKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEI 52 (368)
Q Consensus 15 ~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~ 52 (368)
...||||||+| +|++||.+++ .|.+|+||||.+..+.
T Consensus 6 ~~~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~~~~Gg 43 (513)
T PRK12837 6 EEVDVLVAGSG-GGVAGAYTAAREGLSVALVEATDKFGG 43 (513)
T ss_pred CccCEEEECch-HHHHHHHHHHHCCCcEEEEecCCCCCc
Confidence 47899999999 9999999997 5999999999987553
No 331
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.45 E-value=0.00033 Score=70.07 Aligned_cols=90 Identities=21% Similarity=0.257 Sum_probs=66.9
Q ss_pred cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccc---------ccCchhHHHHHHHHHcCCcEEEecceeeec
Q 017664 138 SANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLE---------FVGSRASQIALDWLTSKKVEVILNQSVTLN 208 (368)
Q Consensus 138 ~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~---------~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i 208 (368)
.+++|+|||+|++|+.+|..|++ .+.+|+++++.+.+.. .++....+...+.+++.|+++++++.+..
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~--~G~~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~- 385 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILAR--AGVQVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHLNCEIGR- 385 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHH--cCCcEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCCeEEEcCCccCC-
Confidence 36899999999999999999985 4789999998875421 23455566667788999999999987631
Q ss_pred ccCCCeEEcCCCcEEecCEEEEccCCCC
Q 017664 209 TISDGLIETSSGETIDTDCHFMCTGKAM 236 (368)
Q Consensus 209 ~~~~~~v~~~~g~~i~~d~vi~a~G~~p 236 (368)
.+.+.+ ....+|.||+|+|..+
T Consensus 386 -----~~~~~~-l~~~~DaV~latGa~~ 407 (639)
T PRK12809 386 -----DITFSD-LTSEYDAVFIGVGTYG 407 (639)
T ss_pred -----cCCHHH-HHhcCCEEEEeCCCCC
Confidence 111111 1346899999999864
No 332
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=97.45 E-value=0.00017 Score=71.17 Aligned_cols=39 Identities=23% Similarity=0.383 Sum_probs=34.3
Q ss_pred CCCCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCcee
Q 017664 13 LVEKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFE 51 (368)
Q Consensus 13 ~~~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~ 51 (368)
...+.||||||+|.|||+||..++ .|.+|+|+||.+..+
T Consensus 8 ~~~~~DVvVVG~G~AGl~AA~~aae~G~~VivlEk~~~~g 47 (584)
T PRK12835 8 FDREVDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAHFG 47 (584)
T ss_pred ccCcCCEEEECccHHHHHHHHHHHHCCCcEEEEEcCCCCC
Confidence 445789999999999999999986 599999999998754
No 333
>PTZ00188 adrenodoxin reductase; Provisional
Probab=97.45 E-value=0.00059 Score=64.71 Aligned_cols=91 Identities=15% Similarity=0.143 Sum_probs=60.5
Q ss_pred cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccc--------ccC--chhHHHHHHHHHcCCcEEEecceeee
Q 017664 138 SANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLE--------FVG--SRASQIALDWLTSKKVEVILNQSVTL 207 (368)
Q Consensus 138 ~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~--------~~~--~~~~~~~~~~l~~~gv~i~~~~~v~~ 207 (368)
.+++|+|||+|++|+.+|..+..+ .+.+|+++++.+.+.. ... ..+...+.+.+...+++++.+..+-.
T Consensus 38 ~~krVAIVGaGPAGlyaA~~Ll~~-~g~~VtlfEk~p~pgGLvR~GVaPdh~~~k~v~~~f~~~~~~~~v~f~gnv~VG~ 116 (506)
T PTZ00188 38 KPFKVGIIGAGPSALYCCKHLLKH-ERVKVDIFEKLPNPYGLIRYGVAPDHIHVKNTYKTFDPVFLSPNYRFFGNVHVGV 116 (506)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHh-cCCeEEEEecCCCCccEEEEeCCCCCccHHHHHHHHHHHHhhCCeEEEeeeEecC
Confidence 468999999999999999977643 4889999999876532 111 12334444556668888886555421
Q ss_pred cccCCCeEEcCCCcEEecCEEEEccCCCC
Q 017664 208 NTISDGLIETSSGETIDTDCHFMCTGKAM 236 (368)
Q Consensus 208 i~~~~~~v~~~~g~~i~~d~vi~a~G~~p 236 (368)
.+..+ .-.-.+|.||+|+|..+
T Consensus 117 ------Dvt~e-eL~~~YDAVIlAtGA~~ 138 (506)
T PTZ00188 117 ------DLKME-ELRNHYNCVIFCCGASE 138 (506)
T ss_pred ------ccCHH-HHHhcCCEEEEEcCCCC
Confidence 01111 11236999999999774
No 334
>PRK08071 L-aspartate oxidase; Provisional
Probab=97.44 E-value=0.00014 Score=70.61 Aligned_cols=35 Identities=23% Similarity=0.400 Sum_probs=32.2
Q ss_pred CCCcEEEECCChHHHHHHHHhhcCCcEEEEcCCCc
Q 017664 15 EKKKVVVIGGGVGGSLLAYHIQSFADVVLIDEKEY 49 (368)
Q Consensus 15 ~~~~vvIIGaG~aGl~aA~~L~~g~~v~lie~~~~ 49 (368)
.++||||||+|.|||+||..+++|.+|+|+||.+.
T Consensus 2 ~~~DVlVVG~G~AGl~AAl~a~~g~~V~lveK~~~ 36 (510)
T PRK08071 2 PSADVIIIGSGIAALTVAKELCHEYNVIIITKKTK 36 (510)
T ss_pred CccCEEEECccHHHHHHHHHhhcCCCEEEEeccCC
Confidence 36799999999999999999988999999999875
No 335
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=97.41 E-value=0.00038 Score=69.69 Aligned_cols=90 Identities=17% Similarity=0.184 Sum_probs=65.6
Q ss_pred cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccc-------c--ccCchhHHHHHHHHHcCCcEEEecceeeec
Q 017664 138 SANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLL-------E--FVGSRASQIALDWLTSKKVEVILNQSVTLN 208 (368)
Q Consensus 138 ~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l-------~--~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i 208 (368)
..++|+|||+|+.|+.+|..|.+ .+.+|+++++.+.+. + ..+..+.+...+.+++.|++++.++.+. +
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La~--~G~~Vtv~e~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~Gv~i~~~~~v~-~ 268 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLR--KGHDVTIFDANEQAGGMMRYGIPRFRLPESVIDADIAPLRAMGAEFRFNTVFG-R 268 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH--CCCcEEEEecCCCCCceeeecCCCCCCCHHHHHHHHHHHHHcCCEEEeCCccc-C
Confidence 35799999999999999999985 588999999876542 1 1344555666778889999999988642 1
Q ss_pred ccCCCeEEcCCCcEEecCEEEEccCCCC
Q 017664 209 TISDGLIETSSGETIDTDCHFMCTGKAM 236 (368)
Q Consensus 209 ~~~~~~v~~~~g~~i~~d~vi~a~G~~p 236 (368)
. +.+.+. ...+|.||+|||..+
T Consensus 269 d-----v~~~~~-~~~~DaVilAtGa~~ 290 (652)
T PRK12814 269 D-----ITLEEL-QKEFDAVLLAVGAQK 290 (652)
T ss_pred c-----cCHHHH-HhhcCEEEEEcCCCC
Confidence 1 111111 235999999999874
No 336
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=97.41 E-value=0.0012 Score=61.93 Aligned_cols=93 Identities=19% Similarity=0.268 Sum_probs=65.7
Q ss_pred eEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccc-----------------------------c-C---------
Q 017664 141 SVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEF-----------------------------V-G--------- 181 (368)
Q Consensus 141 ~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~-----------------------------~-~--------- 181 (368)
.|+|||+|++|+-+|..+.+ .+.+|.++++.+.+... . +
T Consensus 1 DviIiGaG~AGl~~A~~la~--~g~~v~liE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELAR--PGLRVQLIEPHPPIPGNHTYGVWDDDLSDLGLADCVEHVWPDVYEYRFPKQPRKLGTA 78 (388)
T ss_pred CEEEECCCHHHHHHHHHHHh--CCCeEEEEccCCCCCCCccccccHhhhhhhchhhHHhhcCCCceEEecCCcchhcCCc
Confidence 38999999999999998874 48899999976432100 0 0
Q ss_pred ------chhHHHHHHHHHcCCcEEEecceeeecccC-CC--eEEcCCCcEEecCEEEEccCCCC
Q 017664 182 ------SRASQIALDWLTSKKVEVILNQSVTLNTIS-DG--LIETSSGETIDTDCHFMCTGKAM 236 (368)
Q Consensus 182 ------~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~-~~--~v~~~~g~~i~~d~vi~a~G~~p 236 (368)
..+.+.+.+.+.+.|++++ ..++..+..+ ++ .+.+.+|+++++|.||.|+|..+
T Consensus 79 ~~~i~~~~l~~~l~~~~~~~gv~~~-~~~v~~i~~~~~~~~~v~~~~g~~~~a~~VI~A~G~~s 141 (388)
T TIGR01790 79 YGSVDSTRLHEELLQKCPEGGVLWL-ERKAIHAEADGVALSTVYCAGGQRIQARLVIDARGFGP 141 (388)
T ss_pred eeEEcHHHHHHHHHHHHHhcCcEEE-ccEEEEEEecCCceeEEEeCCCCEEEeCEEEECCCCch
Confidence 1122334455667789887 4467766655 33 57778888999999999999764
No 337
>PRK06753 hypothetical protein; Provisional
Probab=97.41 E-value=0.001 Score=62.15 Aligned_cols=94 Identities=19% Similarity=0.232 Sum_probs=66.3
Q ss_pred eEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccc-----------------------------------cCc---
Q 017664 141 SVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEF-----------------------------------VGS--- 182 (368)
Q Consensus 141 ~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~-----------------------------------~~~--- 182 (368)
+|+|||+|++|+-+|..|.+ .+.+|+++++.+.+... .++
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~--~g~~v~v~E~~~~~~~~g~gi~l~~~~~~~L~~~gl~~~~~~~~~~~~~~~~~~~~g~ 79 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQE--QGHEVKVFEKNESVKEVGAGIGIGDNVIKKLGNHDLAKGIKNAGQILSTMNLLDDKGT 79 (373)
T ss_pred EEEEECCCHHHHHHHHHHHh--CCCcEEEEecCCcccccccceeeChHHHHHHHhcChHHHHHhcCCcccceeEEcCCCC
Confidence 69999999999999999985 58899999977532100 000
Q ss_pred h--------------h-HHHHHHHHHc--CCcEEEecceeeecccCCC--eEEcCCCcEEecCEEEEccCCCC
Q 017664 183 R--------------A-SQIALDWLTS--KKVEVILNQSVTLNTISDG--LIETSSGETIDTDCHFMCTGKAM 236 (368)
Q Consensus 183 ~--------------~-~~~~~~~l~~--~gv~i~~~~~v~~i~~~~~--~v~~~~g~~i~~d~vi~a~G~~p 236 (368)
. + ...+.+.|.+ .+.+++++++++.++.+++ .+.+.+|+++++|++|-|-|...
T Consensus 80 ~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~~~vigadG~~S 152 (373)
T PRK06753 80 LLNKVKLKSNTLNVTLHRQTLIDIIKSYVKEDAIFTGKEVTKIENETDKVTIHFADGESEAFDLCIGADGIHS 152 (373)
T ss_pred EEeecccccCCccccccHHHHHHHHHHhCCCceEEECCEEEEEEecCCcEEEEECCCCEEecCEEEECCCcch
Confidence 0 0 0112233322 2467899999998876655 67788899999999999999664
No 338
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.40 E-value=0.00018 Score=71.33 Aligned_cols=35 Identities=23% Similarity=0.184 Sum_probs=31.2
Q ss_pred CCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCc
Q 017664 15 EKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEY 49 (368)
Q Consensus 15 ~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~ 49 (368)
..+||||||||.|||+||..++ .|.+|+|+||...
T Consensus 11 ~~~DVvVIG~G~AGl~AAl~Aa~~G~~V~lveK~~~ 46 (598)
T PRK09078 11 HKYDVVVVGAGGAGLRATLGMAEAGLKTACITKVFP 46 (598)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCC
Confidence 3589999999999999999987 4899999999853
No 339
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=97.40 E-value=0.00051 Score=66.35 Aligned_cols=95 Identities=17% Similarity=0.137 Sum_probs=57.1
Q ss_pred CCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeeccceeeeecccccccceeecccccCceeEEEe-EEEEee--
Q 017664 16 KKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITWASLRAVVEPSFAVRSVINHGDYLSNVKIVVS-TAVSIT-- 91 (368)
Q Consensus 16 ~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-- 91 (368)
..+++|||||+.|+-+|..|+ .|.+|+|+++...+. ..++...........+ .+++++.. .+..+.
T Consensus 180 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~l~--------~~d~~~~~~l~~~L~~--~gV~i~~~~~v~~v~~~ 249 (484)
T TIGR01438 180 PGKTLVVGASYVALECAGFLAGIGLDVTVMVRSILLR--------GFDQDCANKVGEHMEE--HGVKFKRQFVPIKVEQI 249 (484)
T ss_pred CCCEEEECCCHHHHHHHHHHHHhCCcEEEEEeccccc--------ccCHHHHHHHHHHHHH--cCCEEEeCceEEEEEEc
Confidence 357999999999999999987 599999998742211 0111111110001111 15555443 222332
Q ss_pred -cc-EEEecCC---eEEEecEEEEecCCCCCCCC
Q 017664 92 -DT-EVVTAGG---QTFVYDYVVVATGHVESVPK 120 (368)
Q Consensus 92 -~~-~v~~~~g---~~~~~d~lvlAtG~~~~~p~ 120 (368)
.. .+...++ .++++|.+++|+|..|+...
T Consensus 250 ~~~~~v~~~~~~~~~~i~~D~vl~a~G~~pn~~~ 283 (484)
T TIGR01438 250 EAKVKVTFTDSTNGIEEEYDTVLLAIGRDACTRK 283 (484)
T ss_pred CCeEEEEEecCCcceEEEeCEEEEEecCCcCCCc
Confidence 11 3444444 47999999999999988764
No 340
>PRK07804 L-aspartate oxidase; Provisional
Probab=97.40 E-value=0.00019 Score=70.35 Aligned_cols=37 Identities=24% Similarity=0.334 Sum_probs=32.9
Q ss_pred CCCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCce
Q 017664 14 VEKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYF 50 (368)
Q Consensus 14 ~~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~ 50 (368)
...+||||||+|.|||+||..++ .|.+|+|+||....
T Consensus 14 ~~~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~~ 51 (541)
T PRK07804 14 RDAADVVVVGSGVAGLTAALAARRAGRRVLVVTKAALD 51 (541)
T ss_pred ccccCEEEECccHHHHHHHHHHHHcCCeEEEEEccCCC
Confidence 45789999999999999999987 49999999998754
No 341
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.39 E-value=0.0027 Score=60.01 Aligned_cols=135 Identities=19% Similarity=0.238 Sum_probs=84.4
Q ss_pred CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccc----------------------------------cc-----
Q 017664 139 ANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLL----------------------------------EF----- 179 (368)
Q Consensus 139 ~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l----------------------------------~~----- 179 (368)
.++++|||+|++|+-.|..+.+ .+.++++++|.+.+. |+
T Consensus 6 ~~~vaIIGAG~sGL~~ar~l~~--~g~~v~vfEr~~~iGGlW~y~~~~~~~~ss~Y~~l~tn~pKe~~~~~dfpf~~~~~ 83 (448)
T KOG1399|consen 6 SKDVAVIGAGPAGLAAARELLR--EGHEVVVFERTDDIGGLWKYTENVEVVHSSVYKSLRTNLPKEMMGYSDFPFPERDP 83 (448)
T ss_pred CCceEEECcchHHHHHHHHHHH--CCCCceEEEecCCccceEeecCcccccccchhhhhhccCChhhhcCCCCCCcccCc
Confidence 6789999999999999999985 488899988875431 00
Q ss_pred ---cC-chhHHHHHHHHHcCCc--EEEecceeeecccCC-C--eEEcCCC----cEEecCEEEEccCCC--CCchhhhcc
Q 017664 180 ---VG-SRASQIALDWLTSKKV--EVILNQSVTLNTISD-G--LIETSSG----ETIDTDCHFMCTGKA--MASSWLRET 244 (368)
Q Consensus 180 ---~~-~~~~~~~~~~l~~~gv--~i~~~~~v~~i~~~~-~--~v~~~~g----~~i~~d~vi~a~G~~--p~~~~~~~~ 244 (368)
.. .++.++++..++..++ .+.+++.+..++..+ + .|.+.++ ++.-+|.|++|+|.- |..+.+ .
T Consensus 84 ~~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gkW~V~~~~~~~~~~~~ifd~VvVctGh~~~P~~P~~--~ 161 (448)
T KOG1399|consen 84 RYFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGKWRVTTKDNGTQIEEEIFDAVVVCTGHYVEPRIPQI--P 161 (448)
T ss_pred ccCCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccCCceeEEEecCCcceeEEEeeEEEEcccCcCCCCCCcC--C
Confidence 01 1345566667777665 577788777777665 4 5655443 366799999999976 443332 2
Q ss_pred ccccccCCCCcEEeCCCeee---cCCCCeEEecccCC
Q 017664 245 ILKDSLDGRGRLMVDENLRV---RGFKNVFAIGDITD 278 (368)
Q Consensus 245 ~l~~~~~~~g~i~vd~~~~~---~~~~~ifa~GD~~~ 278 (368)
+.+... -.|.+.-...++. -..+.|.++|--.+
T Consensus 162 g~~~~~-f~G~~iHS~~Yk~~e~f~~k~VlVIG~g~S 197 (448)
T KOG1399|consen 162 GPGIES-FKGKIIHSHDYKSPEKFRDKVVLVVGCGNS 197 (448)
T ss_pred CCchhh-cCCcceehhhccCcccccCceEEEECCCcc
Confidence 321111 1232222222221 12568888887664
No 342
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=97.38 E-value=0.0015 Score=61.92 Aligned_cols=96 Identities=17% Similarity=0.227 Sum_probs=65.8
Q ss_pred CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccc--------------------------------c--------
Q 017664 139 ANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLL--------------------------------E-------- 178 (368)
Q Consensus 139 ~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l--------------------------------~-------- 178 (368)
..+|+|||+|+.|+-+|..|.+ .|.+|+++++.+... +
T Consensus 18 ~~dV~IvGaG~aGl~~A~~L~~--~G~~v~v~E~~~~~~~~~~g~~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~ 95 (415)
T PRK07364 18 TYDVAIVGGGIVGLTLAAALKD--SGLRIALIEAQPAEAAAAKGQAYALSLLSARIFEGIGVWEKILPQIGKFRQIRLSD 95 (415)
T ss_pred ccCEEEECcCHHHHHHHHHHhc--CCCEEEEEecCCccccCCCCcEEEechHHHHHHHHCChhhhhHhhcCCccEEEEEe
Confidence 4579999999999999999985 578888888654210 0
Q ss_pred -------ccC---------------chhHHHHHHHHHc-CCcEEEecceeeecccCCC--eEEcCC--C-cEEecCEEEE
Q 017664 179 -------FVG---------------SRASQIALDWLTS-KKVEVILNQSVTLNTISDG--LIETSS--G-ETIDTDCHFM 230 (368)
Q Consensus 179 -------~~~---------------~~~~~~~~~~l~~-~gv~i~~~~~v~~i~~~~~--~v~~~~--g-~~i~~d~vi~ 230 (368)
.++ ..+.+.+.+.+.+ .|++++.++++++++.+++ .+.+.+ + .++++|+||.
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~i~adlvIg 175 (415)
T PRK07364 96 ADYPGVVKFQPTDLGTEALGYVGEHQVLLEALQEFLQSCPNITWLCPAEVVSVEYQQDAATVTLEIEGKQQTLQSKLVVA 175 (415)
T ss_pred CCCCceeeeccccCCCCccEEEEecHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCeeEEEEccCCcceEEeeeEEEE
Confidence 000 0112223344444 3799999999998876655 455543 2 3699999999
Q ss_pred ccCCCC
Q 017664 231 CTGKAM 236 (368)
Q Consensus 231 a~G~~p 236 (368)
|.|...
T Consensus 176 ADG~~S 181 (415)
T PRK07364 176 ADGARS 181 (415)
T ss_pred eCCCCc
Confidence 999764
No 343
>PRK07045 putative monooxygenase; Reviewed
Probab=97.38 E-value=0.0017 Score=61.01 Aligned_cols=95 Identities=22% Similarity=0.257 Sum_probs=67.7
Q ss_pred CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccc------------------------------c----------
Q 017664 140 NSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLE------------------------------F---------- 179 (368)
Q Consensus 140 ~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~------------------------------~---------- 179 (368)
.+|+|||+|++|+-+|..|++ .+.+|+++++.+.... .
T Consensus 6 ~~V~IiGgGpaGl~~A~~L~~--~G~~v~v~E~~~~~~~~~~~~~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~~~~~g 83 (388)
T PRK07045 6 VDVLINGSGIAGVALAHLLGA--RGHSVTVVERAARNRAQNGADLLKPSGIGVVRAMGLLDDVFAAGGLRRDAMRLYHDK 83 (388)
T ss_pred eEEEEECCcHHHHHHHHHHHh--cCCcEEEEeCCCcccCCCcccccCccHHHHHHHcCCHHHHHhcccccccceEEecCC
Confidence 479999999999999999885 4778888886542100 0
Q ss_pred -------c------C-------chhHHHHHHHHH-cCCcEEEecceeeecccCCC----eEEcCCCcEEecCEEEEccCC
Q 017664 180 -------V------G-------SRASQIALDWLT-SKKVEVILNQSVTLNTISDG----LIETSSGETIDTDCHFMCTGK 234 (368)
Q Consensus 180 -------~------~-------~~~~~~~~~~l~-~~gv~i~~~~~v~~i~~~~~----~v~~~~g~~i~~d~vi~a~G~ 234 (368)
+ . ..+.+.+.+.+. ..|++++.+++++.++.+++ .+.+.+|+++.+|++|-|.|.
T Consensus 84 ~~~~~~~~~~~~~~g~~~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~~~~~~vIgADG~ 163 (388)
T PRK07045 84 ELIASLDYRSASALGYFILIPCEQLRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVTLSDGERVAPTVLVGADGA 163 (388)
T ss_pred cEEEEecCCccccCCceEEccHHHHHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEEeCCCCEEECCEEEECCCC
Confidence 0 0 011222333443 35899999999998876543 477888999999999999997
Q ss_pred CC
Q 017664 235 AM 236 (368)
Q Consensus 235 ~p 236 (368)
..
T Consensus 164 ~S 165 (388)
T PRK07045 164 RS 165 (388)
T ss_pred Ch
Confidence 64
No 344
>PRK13748 putative mercuric reductase; Provisional
Probab=97.38 E-value=0.00048 Score=68.02 Aligned_cols=94 Identities=18% Similarity=0.243 Sum_probs=58.2
Q ss_pred CCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeeccceeeeecccccccceeecccccCceeEEEe-EEEEeec-
Q 017664 16 KKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITWASLRAVVEPSFAVRSVINHGDYLSNVKIVVS-TAVSITD- 92 (368)
Q Consensus 16 ~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~- 92 (368)
..+++|||+|+.|+-+|..|+ .|.+|+|+++...+.. .++.+......... ..+++++.. .+..+..
T Consensus 270 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~~--------~d~~~~~~l~~~l~--~~gI~i~~~~~v~~i~~~ 339 (561)
T PRK13748 270 PERLAVIGSSVVALELAQAFARLGSKVTILARSTLFFR--------EDPAIGEAVTAAFR--AEGIEVLEHTQASQVAHV 339 (561)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCccccc--------cCHHHHHHHHHHHH--HCCCEEEcCCEEEEEEec
Confidence 468999999999999999987 4999999998642210 11111111000111 125555432 4444432
Q ss_pred -c--EEEecCCeEEEecEEEEecCCCCCCCC
Q 017664 93 -T--EVVTAGGQTFVYDYVVVATGHVESVPK 120 (368)
Q Consensus 93 -~--~v~~~~g~~~~~d~lvlAtG~~~~~p~ 120 (368)
. .+.+.++ .+.+|.+++|+|..|+...
T Consensus 340 ~~~~~v~~~~~-~i~~D~vi~a~G~~pn~~~ 369 (561)
T PRK13748 340 DGEFVLTTGHG-ELRADKLLVATGRAPNTRS 369 (561)
T ss_pred CCEEEEEecCC-eEEeCEEEEccCCCcCCCC
Confidence 2 2333344 6999999999999988764
No 345
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.38 E-value=0.0015 Score=63.01 Aligned_cols=94 Identities=20% Similarity=0.191 Sum_probs=59.7
Q ss_pred CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccc------cCc-----------------------------hh
Q 017664 140 NSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEF------VGS-----------------------------RA 184 (368)
Q Consensus 140 ~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~------~~~-----------------------------~~ 184 (368)
-.++|||+|+.|+.+|..+++ .+.+|.++++...+... .+. .+
T Consensus 4 ~DvvVIG~GpaG~~AA~~aa~--~G~~V~liE~~~~~GG~c~~~gciPsK~l~~~~~~~~~~~~~~~~~~gi~~~~~~~~ 81 (466)
T PRK06115 4 YDVVIIGGGPGGYNAAIRAGQ--LGLKVACVEGRSTLGGTCLNVGCMPSKALLHASELYEAASGGEFAHLGIEVKPTLNL 81 (466)
T ss_pred ccEEEECCCHHHHHHHHHHHh--CCCeEEEEecCCceeeeeccCcccccHHHHHHhHHHHHHhhhhhhhcCccccCccCH
Confidence 369999999999999999885 58999999963321100 000 00
Q ss_pred H--------------HHHHHHHHcCCcEEEecceeeecccCCC-eEEcCCCc--EEecCEEEEccCCCCC
Q 017664 185 S--------------QIALDWLTSKKVEVILNQSVTLNTISDG-LIETSSGE--TIDTDCHFMCTGKAMA 237 (368)
Q Consensus 185 ~--------------~~~~~~l~~~gv~i~~~~~v~~i~~~~~-~v~~~~g~--~i~~d~vi~a~G~~p~ 237 (368)
. ..+...+++.+|+++.+.- ++..+.. .+.+.+|+ ++++|.+|+|||.+|.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a--~~~~~~~v~v~~~~g~~~~~~~d~lVIATGs~p~ 149 (466)
T PRK06115 82 AQMMKQKDESVEALTKGVEFLFRKNKVDWIKGWG--RLDGVGKVVVKAEDGSETQLEAKDIVIATGSEPT 149 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEE--EEccCCEEEEEcCCCceEEEEeCEEEEeCCCCCC
Confidence 0 1112334556787776652 2332222 34455664 6999999999999874
No 346
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=97.37 E-value=0.00044 Score=66.70 Aligned_cols=97 Identities=18% Similarity=0.220 Sum_probs=60.5
Q ss_pred CCcEEEECCChHHHHHHHHhh----cCCcEEEEcCCCceeeeccceeeeecccccccceeecccccCceeEEEe-EEEEe
Q 017664 16 KKKVVVIGGGVGGSLLAYHIQ----SFADVVLIDEKEYFEITWASLRAVVEPSFAVRSVINHGDYLSNVKIVVS-TAVSI 90 (368)
Q Consensus 16 ~~~vvIIGaG~aGl~aA~~L~----~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 90 (368)
..+++|||||+.|+-+|..+. .|.+|+|+++.+.+... .++...........+ .+++++.. .+..+
T Consensus 187 ~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il~~-------~d~~~~~~l~~~L~~--~GI~i~~~~~v~~i 257 (486)
T TIGR01423 187 PRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMILRG-------FDSTLRKELTKQLRA--NGINIMTNENPAKV 257 (486)
T ss_pred CCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCccccc-------cCHHHHHHHHHHHHH--cCCEEEcCCEEEEE
Confidence 468999999999999997553 38999999998764211 111111110111111 24555433 33444
Q ss_pred ec-----cEEEecCCeEEEecEEEEecCCCCCCCCc
Q 017664 91 TD-----TEVVTAGGQTFVYDYVVVATGHVESVPKS 121 (368)
Q Consensus 91 ~~-----~~v~~~~g~~~~~d~lvlAtG~~~~~p~~ 121 (368)
.. ..+.+.++..+++|.+++|+|..|+....
T Consensus 258 ~~~~~~~~~v~~~~g~~i~~D~vl~a~G~~Pn~~~l 293 (486)
T TIGR01423 258 TLNADGSKHVTFESGKTLDVDVVMMAIGRVPRTQTL 293 (486)
T ss_pred EEcCCceEEEEEcCCCEEEcCEEEEeeCCCcCcccC
Confidence 31 13555677789999999999999877643
No 347
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=97.37 E-value=0.00019 Score=71.26 Aligned_cols=35 Identities=20% Similarity=0.092 Sum_probs=31.7
Q ss_pred CCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCc
Q 017664 15 EKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEY 49 (368)
Q Consensus 15 ~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~ 49 (368)
..+||||||||.|||+||..++ .|.+|+|+||...
T Consensus 28 ~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~lveK~~~ 63 (617)
T PTZ00139 28 HTYDAVVVGAGGAGLRAALGLVELGYKTACISKLFP 63 (617)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEeccCC
Confidence 3689999999999999999987 5999999999875
No 348
>PRK14727 putative mercuric reductase; Provisional
Probab=97.37 E-value=0.00053 Score=66.28 Aligned_cols=94 Identities=14% Similarity=0.186 Sum_probs=57.9
Q ss_pred CCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeeccceeeeecccccccceeecccccCceeEEEe-EEEEee--
Q 017664 16 KKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITWASLRAVVEPSFAVRSVINHGDYLSNVKIVVS-TAVSIT-- 91 (368)
Q Consensus 16 ~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-- 91 (368)
..+++|||+|+.|+-.|..|+ .|.+|+|+++...+.. ..+........... ..+++++.. .+..+.
T Consensus 188 ~k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~~~l~~--------~d~~~~~~l~~~L~--~~GV~i~~~~~V~~i~~~ 257 (479)
T PRK14727 188 PASLTVIGSSVVAAEIAQAYARLGSRVTILARSTLLFR--------EDPLLGETLTACFE--KEGIEVLNNTQASLVEHD 257 (479)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCCCc--------chHHHHHHHHHHHH--hCCCEEEcCcEEEEEEEe
Confidence 468999999999999999987 5999999997532210 11111110000111 125665533 344443
Q ss_pred cc--EEEecCCeEEEecEEEEecCCCCCCCC
Q 017664 92 DT--EVVTAGGQTFVYDYVVVATGHVESVPK 120 (368)
Q Consensus 92 ~~--~v~~~~g~~~~~d~lvlAtG~~~~~p~ 120 (368)
.. .+...++ .+.+|.+++|+|..|+...
T Consensus 258 ~~~~~v~~~~g-~i~aD~VlvA~G~~pn~~~ 287 (479)
T PRK14727 258 DNGFVLTTGHG-ELRAEKLLISTGRHANTHD 287 (479)
T ss_pred CCEEEEEEcCC-eEEeCEEEEccCCCCCccC
Confidence 22 3344444 5899999999999987764
No 349
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.35 E-value=0.0002 Score=70.82 Aligned_cols=35 Identities=20% Similarity=0.238 Sum_probs=31.4
Q ss_pred CCCcEEEECCChHHHHHHHHhhcCCcEEEEcCCCc
Q 017664 15 EKKKVVVIGGGVGGSLLAYHIQSFADVVLIDEKEY 49 (368)
Q Consensus 15 ~~~~vvIIGaG~aGl~aA~~L~~g~~v~lie~~~~ 49 (368)
..+||||||||.|||+||..++++.+|+|+||...
T Consensus 4 ~~~DVlVIG~G~AGl~AAl~aa~~~~VilleK~~~ 38 (583)
T PRK08205 4 HRYDVVIVGAGGAGMRAAIEAGPRARTAVLTKLYP 38 (583)
T ss_pred eeccEEEECccHHHHHHHHHHHhCCCEEEEeCCCC
Confidence 46899999999999999999986699999999754
No 350
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=97.34 E-value=0.00023 Score=69.90 Aligned_cols=38 Identities=26% Similarity=0.358 Sum_probs=33.6
Q ss_pred CCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceee
Q 017664 15 EKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEI 52 (368)
Q Consensus 15 ~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~ 52 (368)
.++||||||+|.+|++||..++ .|.+|+|||+.+.++.
T Consensus 5 ~~~DvvIiG~G~aGl~aA~~~a~~G~~v~liEk~~~~gG 43 (557)
T PRK12844 5 ETYDVVVVGSGGGGMCAALAAADSGLEPLIVEKQDKVGG 43 (557)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCc
Confidence 4789999999999999999998 5999999999876553
No 351
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=97.34 E-value=0.00022 Score=64.96 Aligned_cols=34 Identities=35% Similarity=0.595 Sum_probs=31.1
Q ss_pred CCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCc
Q 017664 16 KKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEY 49 (368)
Q Consensus 16 ~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~ 49 (368)
+.+|+|||||.+|+++|..|. +|++|+|+|+.+.
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~ 36 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHRKGIDVVVLESRED 36 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCeEEEEeeccc
Confidence 578999999999999999997 5999999999765
No 352
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=97.34 E-value=0.00023 Score=70.77 Aligned_cols=55 Identities=13% Similarity=0.004 Sum_probs=42.1
Q ss_pred CchhHHHHHHHHHcCCcEEEecceeeecccC--CC---eEEc---CCCc--EEecCEEEEccCCC
Q 017664 181 GSRASQIALDWLTSKKVEVILNQSVTLNTIS--DG---LIET---SSGE--TIDTDCHFMCTGKA 235 (368)
Q Consensus 181 ~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~--~~---~v~~---~~g~--~i~~d~vi~a~G~~ 235 (368)
+..+...+.+.+++.|++++.++.|..+..+ ++ .+.. .+++ ++.+|.||+|+|..
T Consensus 231 p~rl~~al~~~A~~~Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~~tg~~~~i~a~~VVnAaGaw 295 (627)
T PLN02464 231 DSRLNVALACTAALAGAAVLNYAEVVSLIKDESTGRIVGARVRDNLTGKEFDVYAKVVVNAAGPF 295 (627)
T ss_pred HHHHHHHHHHHHHhCCcEEEeccEEEEEEEecCCCcEEEEEEEECCCCcEEEEEeCEEEECCCHh
Confidence 4467777888899999999999999988765 23 3332 2343 68999999999965
No 353
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=97.33 E-value=0.0002 Score=73.01 Aligned_cols=34 Identities=24% Similarity=0.524 Sum_probs=30.5
Q ss_pred CcEEEECCChHHHHHHHHhhc---CCcEEEEcCCCce
Q 017664 17 KKVVVIGGGVGGSLLAYHIQS---FADVVLIDEKEYF 50 (368)
Q Consensus 17 ~~vvIIGaG~aGl~aA~~L~~---g~~v~lie~~~~~ 50 (368)
++|+|||||||||++|..|++ |++|+|+|+++..
T Consensus 1 m~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~~ 37 (765)
T PRK08255 1 MRIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRPY 37 (765)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCCC
Confidence 479999999999999999974 8999999999863
No 354
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=97.31 E-value=0.00028 Score=69.28 Aligned_cols=40 Identities=18% Similarity=0.272 Sum_probs=34.8
Q ss_pred CCCCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeee
Q 017664 13 LVEKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEIT 53 (368)
Q Consensus 13 ~~~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~ 53 (368)
-...+||||||+| +|++||..++ .|.+|+||||.+.+|+.
T Consensus 13 ~d~e~DvvvvG~G-~G~~aA~~a~~~G~~v~v~Ek~~~~GG~ 53 (564)
T PRK12845 13 RDTTVDLLVVGSG-TGMAAALAAHELGLSVLIVEKSSYVGGS 53 (564)
T ss_pred CCceeCEEEECCc-HHHHHHHHHHHCCCcEEEEecCCCCcCc
Confidence 3458999999999 8999999887 59999999999887754
No 355
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.30 E-value=0.00027 Score=70.50 Aligned_cols=35 Identities=23% Similarity=0.267 Sum_probs=30.9
Q ss_pred CCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCc
Q 017664 15 EKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEY 49 (368)
Q Consensus 15 ~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~ 49 (368)
..+||||||||.|||+||..++ .|.+|+|+|++..
T Consensus 34 ~~~DVlVVG~G~AGl~AAi~Aae~G~~VilieK~~~ 69 (640)
T PRK07573 34 RKFDVIVVGTGLAGASAAATLGELGYNVKVFCYQDS 69 (640)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEecCCC
Confidence 3579999999999999999997 5999999998653
No 356
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=97.29 E-value=0.00027 Score=70.25 Aligned_cols=34 Identities=21% Similarity=0.129 Sum_probs=31.0
Q ss_pred CCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCc
Q 017664 16 KKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEY 49 (368)
Q Consensus 16 ~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~ 49 (368)
.+||||||+|.|||+||..++ .|.+|+||||...
T Consensus 50 ~~DVlVIG~G~AGl~AAl~Aae~G~~VilveK~~~ 84 (635)
T PLN00128 50 TYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFP 84 (635)
T ss_pred ecCEEEECccHHHHHHHHHHHhcCCcEEEEEcCCC
Confidence 579999999999999999987 5999999999864
No 357
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=97.29 E-value=0.00022 Score=70.77 Aligned_cols=45 Identities=18% Similarity=0.162 Sum_probs=36.7
Q ss_pred CCeeecCCCCeEEecccCCCCccchHHHHHHHHHHHHHHHHHHHcC
Q 017664 260 ENLRVRGFKNVFAIGDITDIPEIKQGYLAQKHALVTAKNLKKLMMG 305 (368)
Q Consensus 260 ~~~~~~~~~~ifa~GD~~~~~~~~~~~~a~~~g~~aa~~i~~~l~g 305 (368)
.+++| +.||+||+|||+......++..+..+|+.++.++...+..
T Consensus 389 ~~~~T-~v~glyA~Ge~~~~~~~~l~~~s~~~g~~ag~~~~~~~~~ 433 (608)
T PRK06854 389 YNRMT-TVEGLFAAGDVVGGSPHKFSSGSFAEGRIAAKAAVRYILD 433 (608)
T ss_pred ccccc-CCCCEEEeeecCCCCcchhHHHHHHHHHHHHHHHHHHHHh
Confidence 88998 7999999999986433446777888999999999887754
No 358
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=97.29 E-value=0.00024 Score=65.63 Aligned_cols=45 Identities=16% Similarity=0.213 Sum_probs=35.3
Q ss_pred CCeeecCCCCeEEecccCCCCccchHHHHHHHHHHHHHHHHHHHcCCC
Q 017664 260 ENLRVRGFKNVFAIGDITDIPEIKQGYLAQKHALVTAKNLKKLMMGRN 307 (368)
Q Consensus 260 ~~~~~~~~~~ifa~GD~~~~~~~~~~~~a~~~g~~aa~~i~~~l~g~~ 307 (368)
+.++|+..+++|.+|-+.+... -..|..||-+|+-|....-.+++
T Consensus 381 ~sLeTkkV~GLF~AGQINGTTG---YEEAAAQGIiAGiNA~~~a~~~~ 425 (679)
T KOG2311|consen 381 PSLETKKVQGLFFAGQINGTTG---YEEAAAQGIIAGINASLRASGKP 425 (679)
T ss_pred hhhhhhhccceEEeeeecCccc---hHHHHhhhhHhhhhhhhhhcCCC
Confidence 4688888999999999987632 24799999999999886555554
No 359
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=97.29 E-value=0.00076 Score=57.62 Aligned_cols=95 Identities=23% Similarity=0.264 Sum_probs=64.6
Q ss_pred eEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHcCCcEEEecc-----------eeeecc
Q 017664 141 SVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQ-----------SVTLNT 209 (368)
Q Consensus 141 ~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~-----------~v~~i~ 209 (368)
+.+|||||..|+.+|..|+...|..+|.+++.++-+..- .....+-+++++..|+=...+ .|..+.
T Consensus 1 kfivvgggiagvscaeqla~~~psa~illitass~vksv---tn~~~i~~ylekfdv~eq~~~elg~~f~~~~~~v~~~~ 77 (334)
T KOG2755|consen 1 KFIVVGGGIAGVSCAEQLAQLEPSAEILLITASSFVKSV---TNYQKIGQYLEKFDVKEQNCHELGPDFRRFLNDVVTWD 77 (334)
T ss_pred CeEEEcCccccccHHHHHHhhCCCCcEEEEeccHHHHHH---hhHHHHHHHHHhcCccccchhhhcccHHHHHHhhhhhc
Confidence 368999999999999999988899999999877643211 122333444444333211100 122223
Q ss_pred cCCCeEEcCCCcEEecCEEEEccCCCCCc
Q 017664 210 ISDGLIETSSGETIDTDCHFMCTGKAMAS 238 (368)
Q Consensus 210 ~~~~~v~~~~g~~i~~d~vi~a~G~~p~~ 238 (368)
.+++.+.+.+|+++.++.+.+++|++|-.
T Consensus 78 s~ehci~t~~g~~~ky~kKOG~tg~kPkl 106 (334)
T KOG2755|consen 78 SSEHCIHTQNGEKLKYFKLCLCTGYKPKL 106 (334)
T ss_pred cccceEEecCCceeeEEEEEEecCCCcce
Confidence 33447899999999999999999999853
No 360
>PRK09077 L-aspartate oxidase; Provisional
Probab=97.27 E-value=0.00033 Score=68.62 Aligned_cols=50 Identities=18% Similarity=0.224 Sum_probs=38.7
Q ss_pred CCcEEeCCCeeecCCCCeEEecccCCC--Cc-----cchHHHHHHHHHHHHHHHHHHH
Q 017664 253 RGRLMVDENLRVRGFKNVFAIGDITDI--PE-----IKQGYLAQKHALVTAKNLKKLM 303 (368)
Q Consensus 253 ~g~i~vd~~~~~~~~~~ifa~GD~~~~--~~-----~~~~~~a~~~g~~aa~~i~~~l 303 (368)
.|.|.+|.+.|+ +.|++||+|+|+.. .. -.....|.-.|+.|++++....
T Consensus 353 ~GGi~vd~~~~t-~I~GLyAaGE~a~~g~hGanrl~gnsl~~~~vfG~~Ag~~aa~~~ 409 (536)
T PRK09077 353 CGGVMVDLHGRT-DLDGLYAIGEVSYTGLHGANRMASNSLLECLVYGRSAAEDILSRL 409 (536)
T ss_pred cCCeeECCCCcc-ccCCEEecccccccccCCCccchhhhHHHHHHHHHHHHHHHHHhh
Confidence 477999999998 79999999999742 11 1234568889999999998764
No 361
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.27 E-value=0.00033 Score=69.25 Aligned_cols=35 Identities=29% Similarity=0.263 Sum_probs=31.5
Q ss_pred CCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCc
Q 017664 15 EKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEY 49 (368)
Q Consensus 15 ~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~ 49 (368)
..+||||||+|.|||+||..++ .|.+|+|+||...
T Consensus 6 ~~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lleK~~~ 41 (588)
T PRK08958 6 REFDAVVIGAGGAGMRAALQISQSGQSCALLSKVFP 41 (588)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCC
Confidence 4679999999999999999987 5999999999864
No 362
>PLN02697 lycopene epsilon cyclase
Probab=97.26 E-value=0.002 Score=62.54 Aligned_cols=94 Identities=21% Similarity=0.225 Sum_probs=66.0
Q ss_pred CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccc----------------------------------------
Q 017664 140 NSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEF---------------------------------------- 179 (368)
Q Consensus 140 ~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~---------------------------------------- 179 (368)
-.|+|||+|++|+.+|..+.+ .+.+|.++++.......
T Consensus 109 ~DVvIVGaGPAGLalA~~Lak--~Gl~V~LIe~~~p~~~n~GvW~~~l~~lgl~~~i~~~w~~~~v~~~~~~~~~~~~~Y 186 (529)
T PLN02697 109 LDLVVIGCGPAGLALAAESAK--LGLNVGLIGPDLPFTNNYGVWEDEFKDLGLEDCIEHVWRDTIVYLDDDKPIMIGRAY 186 (529)
T ss_pred ccEEEECcCHHHHHHHHHHHh--CCCcEEEecCcccCCCccccchhHHHhcCcHHHHHhhcCCcEEEecCCceeeccCcc
Confidence 479999999999999988885 47888888764211000
Q ss_pred --c-CchhHHHHHHHHHcCCcEEEecceeeecccCCC--e-EEcCCCcEEecCEEEEccCCCC
Q 017664 180 --V-GSRASQIALDWLTSKKVEVILNQSVTLNTISDG--L-IETSSGETIDTDCHFMCTGKAM 236 (368)
Q Consensus 180 --~-~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~--~-v~~~~g~~i~~d~vi~a~G~~p 236 (368)
. ...+.+.+.+.+.+.|+++ .+++|+.++.+++ . +.+.+|.++.++.||.|+|...
T Consensus 187 g~V~R~~L~~~Ll~~a~~~GV~~-~~~~V~~I~~~~~~~~vv~~~dG~~i~A~lVI~AdG~~S 248 (529)
T PLN02697 187 GRVSRTLLHEELLRRCVESGVSY-LSSKVDRITEASDGLRLVACEDGRVIPCRLATVASGAAS 248 (529)
T ss_pred cEEcHHHHHHHHHHHHHhcCCEE-EeeEEEEEEEcCCcEEEEEEcCCcEEECCEEEECCCcCh
Confidence 0 0012244556667789998 5678888876544 2 4567788999999999999764
No 363
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.26 E-value=0.00027 Score=69.33 Aligned_cols=52 Identities=15% Similarity=0.158 Sum_probs=40.1
Q ss_pred CCcEEeCCCeeecCCCCeEEecccCCCCcc------chHHHHHHHHHHHHHHHHHHHcC
Q 017664 253 RGRLMVDENLRVRGFKNVFAIGDITDIPEI------KQGYLAQKHALVTAKNLKKLMMG 305 (368)
Q Consensus 253 ~g~i~vd~~~~~~~~~~ifa~GD~~~~~~~------~~~~~a~~~g~~aa~~i~~~l~g 305 (368)
.|.+.+|.+.|+ ..|++||+|++++.... .....|...|+.|+++++..+.+
T Consensus 348 ~GGi~vd~~~~t-~IpGLyAaGE~~gg~hG~~rlgG~sl~~a~v~Gr~Ag~~aa~~~~~ 405 (543)
T PRK06263 348 MGGIRINEDCET-NIPGLFACGEVAGGVHGANRLGGNALADTQVFGAIAGKSAAKNAEN 405 (543)
T ss_pred cCCEEECCCCcc-cCCCeEeccccccCCCCCCccchhhhhhhHHHHHHHHHHHHHHhhh
Confidence 477999999998 79999999998753211 12346888999999999887644
No 364
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=97.26 E-value=0.0024 Score=62.45 Aligned_cols=92 Identities=20% Similarity=0.257 Sum_probs=64.0
Q ss_pred CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCc-ccc-----c---------------cc------------------
Q 017664 140 NSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGP-KLL-----E---------------FV------------------ 180 (368)
Q Consensus 140 ~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~-~~l-----~---------------~~------------------ 180 (368)
-.|+|||||+.|+++|..+++ .|.+|.++++.. .+. | .+
T Consensus 5 yDVIVVGGGpAG~eAA~~aAR--~G~kV~LiE~~~d~iG~m~CnpsiGG~akg~lvrEidalGg~~g~~~d~~giq~r~l 82 (618)
T PRK05192 5 YDVIVVGGGHAGCEAALAAAR--MGAKTLLLTHNLDTIGQMSCNPAIGGIAKGHLVREIDALGGEMGKAIDKTGIQFRML 82 (618)
T ss_pred ceEEEECchHHHHHHHHHHHH--cCCcEEEEecccccccccCCccccccchhhHHHHHHHhcCCHHHHHHhhccCceeec
Confidence 469999999999999999885 588999998763 110 0 00
Q ss_pred ---------------Cc-hhHHHHHHHHHcC-CcEEEecceeeecccCCC---eEEcCCCcEEecCEEEEccCC
Q 017664 181 ---------------GS-RASQIALDWLTSK-KVEVILNQSVTLNTISDG---LIETSSGETIDTDCHFMCTGK 234 (368)
Q Consensus 181 ---------------~~-~~~~~~~~~l~~~-gv~i~~~~~v~~i~~~~~---~v~~~~g~~i~~d~vi~a~G~ 234 (368)
+. .+...+.+.+++. |++++. ..+..+..+++ .|.+.+|..+.|+.||+|||.
T Consensus 83 n~skGpAV~s~RaQiDr~ly~kaL~e~L~~~~nV~I~q-~~V~~Li~e~grV~GV~t~dG~~I~Ak~VIlATGT 155 (618)
T PRK05192 83 NTSKGPAVRALRAQADRKLYRAAMREILENQPNLDLFQ-GEVEDLIVENGRVVGVVTQDGLEFRAKAVVLTTGT 155 (618)
T ss_pred ccCCCCceeCcHHhcCHHHHHHHHHHHHHcCCCcEEEE-eEEEEEEecCCEEEEEEECCCCEEECCEEEEeeCc
Confidence 00 0122334455544 888864 45776655554 578889999999999999994
No 365
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=97.24 E-value=0.003 Score=59.29 Aligned_cols=94 Identities=15% Similarity=0.223 Sum_probs=66.7
Q ss_pred CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccc---------------------------------------c-
Q 017664 140 NSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLE---------------------------------------F- 179 (368)
Q Consensus 140 ~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~---------------------------------------~- 179 (368)
.+|+|||+|+.|+-+|..|.+ .+.+|+++++.+.... .
T Consensus 8 ~dViIVGaG~~Gl~~A~~L~~--~G~~v~liE~~~~~~~~r~~~l~~~s~~~l~~lgl~~~~~~~~~~~~~~~~~~~~g~ 85 (388)
T PRK07494 8 TDIAVIGGGPAGLAAAIALAR--AGASVALVAPEPPYADLRTTALLGPSIRFLERLGLWARLAPHAAPLQSMRIVDATGR 85 (388)
T ss_pred CCEEEECcCHHHHHHHHHHhc--CCCeEEEEeCCCCCCCcchhhCcHHHHHHHHHhCchhhhHhhcceeeEEEEEeCCCC
Confidence 479999999999999999885 4788999987632100 0
Q ss_pred --------c---------------CchhHHHHHHHHHcC-CcEEEecceeeecccCCC--eEEcCCCcEEecCEEEEccC
Q 017664 180 --------V---------------GSRASQIALDWLTSK-KVEVILNQSVTLNTISDG--LIETSSGETIDTDCHFMCTG 233 (368)
Q Consensus 180 --------~---------------~~~~~~~~~~~l~~~-gv~i~~~~~v~~i~~~~~--~v~~~~g~~i~~d~vi~a~G 233 (368)
+ ...+.+.+.+.+++. ++. +.++++..++.+++ .+.+++|+++++|.||.|.|
T Consensus 86 ~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~~~-~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG 164 (388)
T PRK07494 86 LIRAPEVRFRAAEIGEDAFGYNIPNWLLNRALEARVAELPNIT-RFGDEAESVRPREDEVTVTLADGTTLSARLVVGADG 164 (388)
T ss_pred CCCCceEEEcHHhcCCCccEEEeEhHHHHHHHHHHHhcCCCcE-EECCeeEEEEEcCCeEEEEECCCCEEEEeEEEEecC
Confidence 0 001123344555555 455 77888988876555 67778888999999999999
Q ss_pred CCC
Q 017664 234 KAM 236 (368)
Q Consensus 234 ~~p 236 (368)
...
T Consensus 165 ~~S 167 (388)
T PRK07494 165 RNS 167 (388)
T ss_pred CCc
Confidence 864
No 366
>PLN03000 amine oxidase
Probab=97.23 E-value=0.00038 Score=70.34 Aligned_cols=42 Identities=19% Similarity=0.223 Sum_probs=37.0
Q ss_pred CCCCcEEEECCChHHHHHHHHhhc-CCcEEEEcCCCceeeecc
Q 017664 14 VEKKKVVVIGGGVGGSLLAYHIQS-FADVVLIDEKEYFEITWA 55 (368)
Q Consensus 14 ~~~~~vvIIGaG~aGl~aA~~L~~-g~~v~lie~~~~~~~~~~ 55 (368)
....+|+|||||++|+++|..|++ |++|+|+|+++..|+...
T Consensus 182 ~~~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~riGGRi~ 224 (881)
T PLN03000 182 SSKSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPGGRVY 224 (881)
T ss_pred CCCCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcCCCCcc
Confidence 346899999999999999999985 999999999999886543
No 367
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.23 E-value=0.00032 Score=69.31 Aligned_cols=52 Identities=12% Similarity=0.150 Sum_probs=39.0
Q ss_pred CCcEEeCCCeeecC-----CCCeEEecccCCC--Cc-----cchHHHHHHHHHHHHHHHHHHHc
Q 017664 253 RGRLMVDENLRVRG-----FKNVFAIGDITDI--PE-----IKQGYLAQKHALVTAKNLKKLMM 304 (368)
Q Consensus 253 ~g~i~vd~~~~~~~-----~~~ifa~GD~~~~--~~-----~~~~~~a~~~g~~aa~~i~~~l~ 304 (368)
.|.+.+|.+.|+.+ .|++||+|+|++. .. -.....|.-.|+.|++++++.+.
T Consensus 352 ~GGi~vd~~~~t~~~~g~~I~GLyAaGE~a~~g~hGanrlggnsl~~~~v~Gr~Ag~~aa~~~~ 415 (577)
T PRK06069 352 MGGIHTDVYGRVLTADGEWVRGLWAAGEAAAVSVHGANRLGSNSTAECLVWGRIAGEQAAEYAL 415 (577)
T ss_pred CCCceECCCCcCcCCCCCEeCCeEeccccccccccccccchhhHHHHHHHHHHHHHHHHHHHhh
Confidence 47789999999832 8999999999752 11 12335678889999999887764
No 368
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=97.23 E-value=0.0023 Score=62.80 Aligned_cols=95 Identities=26% Similarity=0.393 Sum_probs=66.3
Q ss_pred CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccc-----------------------------------------
Q 017664 139 ANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLL----------------------------------------- 177 (368)
Q Consensus 139 ~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l----------------------------------------- 177 (368)
..+|+|||+|++|+-+|..|.+ .+.+|+++++.+.+.
T Consensus 10 ~~dV~IVGaGp~Gl~lA~~L~~--~G~~v~v~Er~~~~~~~~ra~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~ 87 (538)
T PRK06183 10 DTDVVIVGAGPVGLTLANLLGQ--YGVRVLVLERWPTLYDLPRAVGIDDEALRVLQAIGLADEVLPHTTPNHGMRFLDAK 87 (538)
T ss_pred CCCEEEECCCHHHHHHHHHHHH--CCCcEEEEecCCCCCCCCceeeeCHHHHHHHHHcCChhHHHhhcccCCceEEEcCC
Confidence 4579999999999999999985 478888888764210
Q ss_pred ----cccC-----------------chhHHHHHHHHHc-CCcEEEecceeeecccCCC--eEEcC--CC--cEEecCEEE
Q 017664 178 ----EFVG-----------------SRASQIALDWLTS-KKVEVILNQSVTLNTISDG--LIETS--SG--ETIDTDCHF 229 (368)
Q Consensus 178 ----~~~~-----------------~~~~~~~~~~l~~-~gv~i~~~~~v~~i~~~~~--~v~~~--~g--~~i~~d~vi 229 (368)
..++ +.+.+.+.+.+++ .|++++.+++++.++.+++ .+.+. +| +++++|+||
T Consensus 88 g~~~~~~~~~~~~~~g~~~~~~~~q~~le~~L~~~~~~~~gv~v~~g~~v~~i~~~~~~v~v~~~~~~G~~~~i~ad~vV 167 (538)
T PRK06183 88 GRCLAEIARPSTGEFGWPRRNAFHQPLLEAVLRAGLARFPHVRVRFGHEVTALTQDDDGVTVTLTDADGQRETVRARYVV 167 (538)
T ss_pred CCEEEEEcCCCCCCCCCChhccCChHHHHHHHHHHHHhCCCcEEEcCCEEEEEEEcCCeEEEEEEcCCCCEEEEEEEEEE
Confidence 0000 0111223344444 4999999999999987665 44443 56 479999999
Q ss_pred EccCCC
Q 017664 230 MCTGKA 235 (368)
Q Consensus 230 ~a~G~~ 235 (368)
-|.|..
T Consensus 168 gADG~~ 173 (538)
T PRK06183 168 GCDGAN 173 (538)
T ss_pred ecCCCc
Confidence 999975
No 369
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=97.22 E-value=0.00032 Score=67.90 Aligned_cols=38 Identities=16% Similarity=0.057 Sum_probs=34.5
Q ss_pred CcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeec
Q 017664 17 KKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITW 54 (368)
Q Consensus 17 ~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~ 54 (368)
+||+|||+||+|+.+|+.|. +|++|++||++...+..|
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~~~~~ 39 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAADSFLK 39 (544)
T ss_pred CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCccCCCc
Confidence 59999999999999999998 599999999999887555
No 370
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=97.21 E-value=0.0011 Score=61.04 Aligned_cols=65 Identities=11% Similarity=0.044 Sum_probs=52.0
Q ss_pred chhHHHHHHHHHcCCcEEEecceeeecccCCC---eEEcCCCcEEecCEEEEccCCCCCc-hhhhcccc
Q 017664 182 SRASQIALDWLTSKKVEVILNQSVTLNTISDG---LIETSSGETIDTDCHFMCTGKAMAS-SWLRETIL 246 (368)
Q Consensus 182 ~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~---~v~~~~g~~i~~d~vi~a~G~~p~~-~~~~~~~l 246 (368)
.+++..+.+-+++.|-+|.+...|++|..+++ +|.+.||+++.+..|+.-++..-.. .++..+.+
T Consensus 264 Gavs~aia~~~~~~GaeI~tka~Vq~Illd~gka~GV~L~dG~ev~sk~VvSNAt~~~Tf~kLlp~e~L 332 (561)
T KOG4254|consen 264 GAVSFAIAEGAKRAGAEIFTKATVQSILLDSGKAVGVRLADGTEVRSKIVVSNATPWDTFEKLLPGEAL 332 (561)
T ss_pred hHHHHHHHHHHHhccceeeehhhhhheeccCCeEEEEEecCCcEEEeeeeecCCchHHHHHHhCCCccC
Confidence 36778888999999999999999999988877 8999999999998888877654222 44554444
No 371
>PTZ00058 glutathione reductase; Provisional
Probab=97.21 E-value=0.00078 Score=65.98 Aligned_cols=97 Identities=13% Similarity=0.182 Sum_probs=59.2
Q ss_pred CCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeeccceeeeecccccccceeecccccCceeEEEe-EEEEeecc
Q 017664 16 KKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITWASLRAVVEPSFAVRSVINHGDYLSNVKIVVS-TAVSITDT 93 (368)
Q Consensus 16 ~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 93 (368)
..+++|||||+.|+-+|..|+ .|.+|+++++.+.+... .++...........+ .+++++.. .+..++..
T Consensus 237 pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~il~~-------~d~~i~~~l~~~L~~--~GV~i~~~~~V~~I~~~ 307 (561)
T PTZ00058 237 AKRIGIAGSGYIAVELINVVNRLGAESYIFARGNRLLRK-------FDETIINELENDMKK--NNINIITHANVEEIEKV 307 (561)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCcEEEEEeccccccc-------CCHHHHHHHHHHHHH--CCCEEEeCCEEEEEEec
Confidence 578999999999999999987 49999999998754211 111111100001111 14554432 23334321
Q ss_pred -----EEEe-cCCeEEEecEEEEecCCCCCCCCc
Q 017664 94 -----EVVT-AGGQTFVYDYVVVATGHVESVPKS 121 (368)
Q Consensus 94 -----~v~~-~~g~~~~~d~lvlAtG~~~~~p~~ 121 (368)
.+.. .+++.+++|.|++|+|..|+....
T Consensus 308 ~~~~v~v~~~~~~~~i~aD~VlvA~Gr~Pn~~~L 341 (561)
T PTZ00058 308 KEKNLTIYLSDGRKYEHFDYVIYCVGRSPNTEDL 341 (561)
T ss_pred CCCcEEEEECCCCEEEECCEEEECcCCCCCcccc
Confidence 2222 234579999999999999876654
No 372
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=97.20 E-value=0.00094 Score=64.26 Aligned_cols=95 Identities=24% Similarity=0.279 Sum_probs=57.3
Q ss_pred CCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeeccceeeeecccccccceeecccccCceeEE-EeEEEEeec-
Q 017664 16 KKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITWASLRAVVEPSFAVRSVINHGDYLSNVKIV-VSTAVSITD- 92 (368)
Q Consensus 16 ~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~- 92 (368)
..+++|||+|+.|+.+|..|+ .|.+|+++++.+.+... ..+........... ..++++ ...+..++.
T Consensus 169 ~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~-------~d~~~~~~~~~~l~---~~I~i~~~~~v~~i~~~ 238 (460)
T PRK06292 169 PKSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRILPL-------EDPEVSKQAQKILS---KEFKIKLGAKVTSVEKS 238 (460)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCcc-------hhHHHHHHHHHHHh---hccEEEcCCEEEEEEEc
Confidence 468999999999999999987 49999999998765311 01111000000000 013332 123333321
Q ss_pred -c-EEE--e--cCCeEEEecEEEEecCCCCCCCC
Q 017664 93 -T-EVV--T--AGGQTFVYDYVVVATGHVESVPK 120 (368)
Q Consensus 93 -~-~v~--~--~~g~~~~~d~lvlAtG~~~~~p~ 120 (368)
+ .+. . .++..+++|.+++|+|..|+.+.
T Consensus 239 ~~~~v~~~~~~~~~~~i~~D~vi~a~G~~p~~~~ 272 (460)
T PRK06292 239 GDEKVEELEKGGKTETIEADYVLVATGRRPNTDG 272 (460)
T ss_pred CCceEEEEEcCCceEEEEeCEEEEccCCccCCCC
Confidence 1 232 2 23357999999999999998874
No 373
>PRK02106 choline dehydrogenase; Validated
Probab=97.20 E-value=0.0004 Score=68.46 Aligned_cols=59 Identities=8% Similarity=0.033 Sum_probs=42.5
Q ss_pred HHHHHcCCcEEEecceeeecccCCC---eEEc--CCC--cEEecCEEEEccCCCCCchhhhccccc
Q 017664 189 LDWLTSKKVEVILNQSVTLNTISDG---LIET--SSG--ETIDTDCHFMCTGKAMASSWLRETILK 247 (368)
Q Consensus 189 ~~~l~~~gv~i~~~~~v~~i~~~~~---~v~~--~~g--~~i~~d~vi~a~G~~p~~~~~~~~~l~ 247 (368)
....++.|+++++++.|.+|..+++ .|+. .++ ..+.++.||+|+|..-.+.+|..++++
T Consensus 208 ~~a~~~~nl~i~~~a~V~rI~~~~~~a~GV~~~~~~~~~~~~~ak~VILaaGai~TP~LLl~SGIG 273 (560)
T PRK02106 208 DPALKRPNLTIVTHALTDRILFEGKRAVGVEYERGGGRETARARREVILSAGAINSPQLLQLSGIG 273 (560)
T ss_pred ccccCCCCcEEEcCCEEEEEEEeCCeEEEEEEEeCCcEEEEEeeeeEEEccCCCCCHHHHhhcCCC
Confidence 3344567899999999999987654 4443 222 246799999999987666777777764
No 374
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=97.19 E-value=0.0012 Score=65.20 Aligned_cols=90 Identities=23% Similarity=0.327 Sum_probs=64.0
Q ss_pred hcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccc---------ccCchhHHHHHHHHHcCCcEEEeccee-e
Q 017664 137 KSANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLE---------FVGSRASQIALDWLTSKKVEVILNQSV-T 206 (368)
Q Consensus 137 ~~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~---------~~~~~~~~~~~~~l~~~gv~i~~~~~v-~ 206 (368)
..+++|+|||+|++|+.+|..+.+ .+.+|+++++.+.+.. .++.+....-.+.+++.|++++.++.+ .
T Consensus 135 ~~g~~V~VIGaGpaGL~aA~~l~~--~G~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~Gv~~~~~~~~~~ 212 (564)
T PRK12771 135 DTGKRVAVIGGGPAGLSAAYHLRR--MGHAVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDLGVEVRLGVRVGE 212 (564)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHH--CCCeEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCCEEEeCCEECC
Confidence 357899999999999999999885 4788999997765421 123344555566788899999988765 3
Q ss_pred ecccCCCeEEcCCCcEEecCEEEEccCCCC
Q 017664 207 LNTISDGLIETSSGETIDTDCHFMCTGKAM 236 (368)
Q Consensus 207 ~i~~~~~~v~~~~g~~i~~d~vi~a~G~~p 236 (368)
.+..+ . + ...+|.+|+|+|..+
T Consensus 213 ~~~~~--~--~----~~~~D~Vi~AtG~~~ 234 (564)
T PRK12771 213 DITLE--Q--L----EGEFDAVFVAIGAQL 234 (564)
T ss_pred cCCHH--H--H----HhhCCEEEEeeCCCC
Confidence 22111 0 1 124899999999764
No 375
>PRK08275 putative oxidoreductase; Provisional
Probab=97.18 E-value=0.00035 Score=68.72 Aligned_cols=51 Identities=20% Similarity=0.307 Sum_probs=40.6
Q ss_pred CcEEeCCCeeecCCCCeEEecccCCCCccchHHHHHHHHHHHHHHHHHHHcCC
Q 017664 254 GRLMVDENLRVRGFKNVFAIGDITDIPEIKQGYLAQKHALVTAKNLKKLMMGR 306 (368)
Q Consensus 254 g~i~vd~~~~~~~~~~ifa~GD~~~~~~~~~~~~a~~~g~~aa~~i~~~l~g~ 306 (368)
|.|.||.+++| +.|++||+|||+..+ ......|.-.|+.|+.++..++.+.
T Consensus 357 Ggi~~d~~~~t-~i~gl~a~Ge~~~~~-~~~~~~~~~~G~~a~~~~~~~~~~~ 407 (554)
T PRK08275 357 SGVWVNEKAET-TVPGLYAAGDMASVP-HNYMLGAFTYGWFAGENAAEYVAGR 407 (554)
T ss_pred CcEEECCCCcc-CCCCEEECcccCCch-hHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 67999999999 799999999997533 2345568888999999988776543
No 376
>PRK13984 putative oxidoreductase; Provisional
Probab=97.17 E-value=0.0011 Score=66.00 Aligned_cols=89 Identities=24% Similarity=0.244 Sum_probs=64.8
Q ss_pred cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccc---------ccCchhHHHHHHHHHcCCcEEEecceeeec
Q 017664 138 SANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLE---------FVGSRASQIALDWLTSKKVEVILNQSVTLN 208 (368)
Q Consensus 138 ~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~---------~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i 208 (368)
..++++|||+|+.|+.+|..|.+ .+.+|+++++.+.... ..+.++.....+.+++.|++++.++.+..
T Consensus 282 ~~~~v~IIGaG~aGl~aA~~L~~--~G~~v~vie~~~~~gG~~~~~i~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~- 358 (604)
T PRK13984 282 KNKKVAIVGSGPAGLSAAYFLAT--MGYEVTVYESLSKPGGVMRYGIPSYRLPDEALDKDIAFIEALGVKIHLNTRVGK- 358 (604)
T ss_pred CCCeEEEECCCHHHHHHHHHHHH--CCCeEEEEecCCCCCceEeecCCcccCCHHHHHHHHHHHHHCCcEEECCCEeCC-
Confidence 47889999999999999999985 5889999988765321 12334445556788899999999987732
Q ss_pred ccCCCeEEcCCCcEEecCEEEEccCCC
Q 017664 209 TISDGLIETSSGETIDTDCHFMCTGKA 235 (368)
Q Consensus 209 ~~~~~~v~~~~g~~i~~d~vi~a~G~~ 235 (368)
. +..++ ...++|.+|+|||..
T Consensus 359 ~-----~~~~~-~~~~yD~vilAtGa~ 379 (604)
T PRK13984 359 D-----IPLEE-LREKHDAVFLSTGFT 379 (604)
T ss_pred c-----CCHHH-HHhcCCEEEEEcCcC
Confidence 1 11111 135799999999975
No 377
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=97.16 E-value=0.00094 Score=63.39 Aligned_cols=89 Identities=22% Similarity=0.273 Sum_probs=68.2
Q ss_pred cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccc---------ccCchhHHHHHHHHHcCCcEEEecceeeec
Q 017664 138 SANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLE---------FVGSRASQIALDWLTSKKVEVILNQSVTLN 208 (368)
Q Consensus 138 ~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~---------~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i 208 (368)
.+++|.|||+||.|+.+|..|++ .+..|+++++.+.... ..+.++.+...+.|++.|++|+.++.+-.
T Consensus 122 tg~~VaviGaGPAGl~~a~~L~~--~G~~Vtv~e~~~~~GGll~yGIP~~kl~k~i~d~~i~~l~~~Gv~~~~~~~vG~- 198 (457)
T COG0493 122 TGKKVAVIGAGPAGLAAADDLSR--AGHDVTVFERVALDGGLLLYGIPDFKLPKDILDRRLELLERSGVEFKLNVRVGR- 198 (457)
T ss_pred CCCEEEEECCCchHhhhHHHHHh--CCCeEEEeCCcCCCceeEEecCchhhccchHHHHHHHHHHHcCeEEEEcceECC-
Confidence 36999999999999999999995 5899999988765421 24667888899999999999999997641
Q ss_pred ccCCCeEEcCCCcEEecCEEEEccCCC
Q 017664 209 TISDGLIETSSGETIDTDCHFMCTGKA 235 (368)
Q Consensus 209 ~~~~~~v~~~~g~~i~~d~vi~a~G~~ 235 (368)
.+.+++ ..-++|.+++++|..
T Consensus 199 -----~it~~~-L~~e~Dav~l~~G~~ 219 (457)
T COG0493 199 -----DITLEE-LLKEYDAVFLATGAG 219 (457)
T ss_pred -----cCCHHH-HHHhhCEEEEecccc
Confidence 011111 123459999999965
No 378
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=97.16 E-value=0.0029 Score=52.85 Aligned_cols=95 Identities=20% Similarity=0.220 Sum_probs=65.7
Q ss_pred CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEe--------------------cCccccc-ccCchhHHHHHHHHHcCCc
Q 017664 139 ANSVLIVGGGPTGVELAGEIAVDFPDKKVILVH--------------------RGPKLLE-FVGSRASQIALDWLTSKKV 197 (368)
Q Consensus 139 ~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~--------------------~~~~~l~-~~~~~~~~~~~~~l~~~gv 197 (368)
..+++|||+|+.+.-.|.++.+.. .+-.+++ .-+.|.. -..+++.+.++++.++.|.
T Consensus 8 ~e~v~IiGSGPAa~tAAiYaarae--lkPllfEG~~~~~i~pGGQLtTTT~veNfPGFPdgi~G~~l~d~mrkqs~r~Gt 85 (322)
T KOG0404|consen 8 NENVVIIGSGPAAHTAAIYAARAE--LKPLLFEGMMANGIAPGGQLTTTTDVENFPGFPDGITGPELMDKMRKQSERFGT 85 (322)
T ss_pred eeeEEEEccCchHHHHHHHHhhcc--cCceEEeeeeccCcCCCceeeeeeccccCCCCCcccccHHHHHHHHHHHHhhcc
Confidence 458999999999999998877532 2222222 1122211 2356888999999999999
Q ss_pred EEEecceeeecccCCC--eEEcCCCcEEecCEEEEccCCCCC
Q 017664 198 EVILNQSVTLNTISDG--LIETSSGETIDTDCHFMCTGKAMA 237 (368)
Q Consensus 198 ~i~~~~~v~~i~~~~~--~v~~~~g~~i~~d~vi~a~G~~p~ 237 (368)
++++.+ |.++..+.. .+.+ +.+.+.+|.||+|||....
T Consensus 86 ~i~tEt-Vskv~~sskpF~l~t-d~~~v~~~avI~atGAsAk 125 (322)
T KOG0404|consen 86 EIITET-VSKVDLSSKPFKLWT-DARPVTADAVILATGASAK 125 (322)
T ss_pred eeeeee-hhhccccCCCeEEEe-cCCceeeeeEEEeccccee
Confidence 999765 555665555 4444 4457999999999997654
No 379
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=97.13 E-value=0.0037 Score=65.69 Aligned_cols=98 Identities=21% Similarity=0.211 Sum_probs=66.8
Q ss_pred CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccc----------c-CchhHHHHHHHHHcC-CcEEEecceee
Q 017664 139 ANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEF----------V-GSRASQIALDWLTSK-KVEVILNQSVT 206 (368)
Q Consensus 139 ~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~----------~-~~~~~~~~~~~l~~~-gv~i~~~~~v~ 206 (368)
..+|+|||+|+.|+..|..+.+ .+.+|++++..+.+... . ..++...+.+.+++. ++++++++.|.
T Consensus 163 ~~dVvIIGaGPAGLaAA~~aar--~G~~V~liD~~~~~GG~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~v~v~~~t~V~ 240 (985)
T TIGR01372 163 HCDVLVVGAGPAGLAAALAAAR--AGARVILVDEQPEAGGSLLSEAETIDGKPAADWAAATVAELTAMPEVTLLPRTTAF 240 (985)
T ss_pred cCCEEEECCCHHHHHHHHHHHh--CCCcEEEEecCCCCCCeeeccccccCCccHHHHHHHHHHHHhcCCCcEEEcCCEEE
Confidence 4689999999999999999885 68899999987654221 0 112334455666655 59999999887
Q ss_pred ecccCCC--eEE-c--------CC---C--cEEecCEEEEccCCCCCc
Q 017664 207 LNTISDG--LIE-T--------SS---G--ETIDTDCHFMCTGKAMAS 238 (368)
Q Consensus 207 ~i~~~~~--~v~-~--------~~---g--~~i~~d~vi~a~G~~p~~ 238 (368)
.+...+. .+. . .. + .++.+|.||+|||..+..
T Consensus 241 ~i~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~i~a~~VILATGa~~r~ 288 (985)
T TIGR01372 241 GYYDHNTVGALERVTDHLDAPPKGVPRERLWRIRAKRVVLATGAHERP 288 (985)
T ss_pred EEecCCeEEEEEEeeeccccccCCccccceEEEEcCEEEEcCCCCCcC
Confidence 6643221 110 0 00 1 268999999999988653
No 380
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=97.13 E-value=0.00047 Score=66.73 Aligned_cols=50 Identities=16% Similarity=0.188 Sum_probs=38.1
Q ss_pred CCcEEeCCCeeecCCCCeEEecccCC-C-Cc-----cchHHHHHHHHHHHHHHHHHHH
Q 017664 253 RGRLMVDENLRVRGFKNVFAIGDITD-I-PE-----IKQGYLAQKHALVTAKNLKKLM 303 (368)
Q Consensus 253 ~g~i~vd~~~~~~~~~~ifa~GD~~~-~-~~-----~~~~~~a~~~g~~aa~~i~~~l 303 (368)
.|.|.||.+.|+ +.||+||+|+|+. . .. -.....+.-.|+.|++++....
T Consensus 333 ~GGi~vd~~~~t-~I~GLyAaGE~a~~g~hGanrl~g~sl~~~~v~G~~Ag~~aa~~~ 389 (488)
T TIGR00551 333 CGGISVDDHGRT-TVPGLYAIGEVACTGLHGANRLASNSLLECLVFGWSAAEDISRRP 389 (488)
T ss_pred cCCEEECCCCcc-cCCCEEECccccccccCcccccchhHHHHHHHHHHHHHHHHHhhc
Confidence 478999999998 7999999999963 2 11 1233567888999999987653
No 381
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=97.12 E-value=0.00046 Score=69.00 Aligned_cols=53 Identities=13% Similarity=0.219 Sum_probs=39.7
Q ss_pred CCcEEeCCCeeecCCCCeEEecccCCCC--cc-----chHHHHHHHHHHHHHHHHHHHcC
Q 017664 253 RGRLMVDENLRVRGFKNVFAIGDITDIP--EI-----KQGYLAQKHALVTAKNLKKLMMG 305 (368)
Q Consensus 253 ~g~i~vd~~~~~~~~~~ifa~GD~~~~~--~~-----~~~~~a~~~g~~aa~~i~~~l~g 305 (368)
-|.|.||.+.|+.+.|++||+|+|++.. .. .....+.-.|+.|+++++..+.+
T Consensus 372 mGGi~vd~~~~t~~I~GLyAaGE~a~~g~hGanrlggnsl~~~~v~G~iAg~~aa~~~~~ 431 (657)
T PRK08626 372 MGGIRTNPTGESYGLKGLFSAGEAACWDMHGFNRLGGNSLAETVVAGMIVGKYVADFCLG 431 (657)
T ss_pred cCCceECCCCCCcccCCEEecccccccCCCCCCccchHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4779999999984599999999997521 11 12356788899999998877643
No 382
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=97.12 E-value=0.0043 Score=58.16 Aligned_cols=96 Identities=15% Similarity=0.216 Sum_probs=67.3
Q ss_pred CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCc--cc------------c-c-------------cc-----------
Q 017664 140 NSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGP--KL------------L-E-------------FV----------- 180 (368)
Q Consensus 140 ~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~--~~------------l-~-------------~~----------- 180 (368)
.+|+|||+|+.|+-+|..|.+ .+.+|+++++.+ .+ + + .+
T Consensus 4 ~dv~IvGgG~aGl~~A~~L~~--~G~~v~l~E~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~~~~~~~~~~~~~ 81 (384)
T PRK08849 4 YDIAVVGGGMVGAATALGFAK--QGRSVAVIEGGEPKAFEPSQPMDIRVSAISQTSVDLLESLGAWSSIVAMRVCPYKRL 81 (384)
T ss_pred ccEEEECcCHHHHHHHHHHHh--CCCcEEEEcCCCcccCCCCCCCCccEEEecHHHHHHHHHCCCchhhhHhhCCccceE
Confidence 369999999999999999985 578999998653 00 0 0 00
Q ss_pred ------------C-ch--------------hHHHHHHHHHc-CCcEEEecceeeecccCCC--eEEcCCCcEEecCEEEE
Q 017664 181 ------------G-SR--------------ASQIALDWLTS-KKVEVILNQSVTLNTISDG--LIETSSGETIDTDCHFM 230 (368)
Q Consensus 181 ------------~-~~--------------~~~~~~~~l~~-~gv~i~~~~~v~~i~~~~~--~v~~~~g~~i~~d~vi~ 230 (368)
+ .. +...+.+.+++ .|++++.++++++++.+++ .+.+.+|+++++|++|.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~i~i~~~~~v~~~~~~~~~~~v~~~~g~~~~~~lvIg 161 (384)
T PRK08849 82 ETWEHPECRTRFHSDELNLDQLGYIVENRLIQLGLWQQFAQYPNLTLMCPEKLADLEFSAEGNRVTLESGAEIEAKWVIG 161 (384)
T ss_pred EEEeCCCceEEecccccCCCccEEEEEcHHHHHHHHHHHHhCCCeEEECCCceeEEEEcCCeEEEEECCCCEEEeeEEEE
Confidence 0 00 00011222333 4799999999998876655 67888999999999999
Q ss_pred ccCCCCC
Q 017664 231 CTGKAMA 237 (368)
Q Consensus 231 a~G~~p~ 237 (368)
|.|....
T Consensus 162 ADG~~S~ 168 (384)
T PRK08849 162 ADGANSQ 168 (384)
T ss_pred ecCCCch
Confidence 9998754
No 383
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=97.12 E-value=0.00063 Score=62.16 Aligned_cols=41 Identities=24% Similarity=0.330 Sum_probs=34.2
Q ss_pred CCCCcEEEECCChHHHHHHHHhhc---CCcEEEEcCCCceeeec
Q 017664 14 VEKKKVVVIGGGVGGSLLAYHIQS---FADVVLIDEKEYFEITW 54 (368)
Q Consensus 14 ~~~~~vvIIGaG~aGl~aA~~L~~---g~~v~lie~~~~~~~~~ 54 (368)
...++|+|+|||.+||++|++|++ ...|+|+|..+..|+..
T Consensus 9 ~~~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGwi 52 (491)
T KOG1276|consen 9 VSGMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGWI 52 (491)
T ss_pred eecceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCccccee
Confidence 345799999999999999999974 55678899999988553
No 384
>PLN02815 L-aspartate oxidase
Probab=97.11 E-value=0.0005 Score=67.80 Aligned_cols=50 Identities=12% Similarity=0.035 Sum_probs=37.8
Q ss_pred CCcEEeCCCeeecCCCCeEEecccCCC--Cc-----cchHHHHHHHHHHHHHHHHHHH
Q 017664 253 RGRLMVDENLRVRGFKNVFAIGDITDI--PE-----IKQGYLAQKHALVTAKNLKKLM 303 (368)
Q Consensus 253 ~g~i~vd~~~~~~~~~~ifa~GD~~~~--~~-----~~~~~~a~~~g~~aa~~i~~~l 303 (368)
-|.+.+|.+.|| +.||+||+|+|++. .. -.....+.-.|+.|++++...+
T Consensus 377 ~GGi~vD~~~~t-~IpGLyAaGE~a~~G~hGanrl~gnsl~e~lvfGr~Ag~~aa~~~ 433 (594)
T PLN02815 377 CGGVRTGLQGET-NVQGLYAAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHM 433 (594)
T ss_pred CCCeeECCCCce-ecCCEEecccccccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHh
Confidence 478999999998 79999999999742 11 1233567788899998887654
No 385
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=97.10 E-value=0.0056 Score=51.36 Aligned_cols=97 Identities=20% Similarity=0.143 Sum_probs=61.2
Q ss_pred CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccc-------c-------------------------------
Q 017664 139 ANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEF-------V------------------------------- 180 (368)
Q Consensus 139 ~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~-------~------------------------------- 180 (368)
...++|||+|++|+-+|..|++. +.+|.+++++..+... +
T Consensus 17 ~~DV~IVGaGpaGl~aA~~La~~--g~kV~v~E~~~~~GGg~~~Gg~lf~~iVVq~~a~~iL~elgi~y~~~~~g~~v~d 94 (230)
T PF01946_consen 17 EYDVAIVGAGPAGLTAAYYLAKA--GLKVAVIERKLSPGGGMWGGGMLFNKIVVQEEADEILDELGIPYEEYGDGYYVAD 94 (230)
T ss_dssp EESEEEE--SHHHHHHHHHHHHH--TS-EEEEESSSS-BTTTTS-CTT---EEEETTTHHHHHHHT---EE-SSEEEES-
T ss_pred cCCEEEECCChhHHHHHHHHHHC--CCeEEEEecCCCCCccccccccccchhhhhhhHHHHHHhCCceeEEeCCeEEEEc
Confidence 46799999999999999999975 8999999987543110 0
Q ss_pred CchhHHHHHHHHHcCCcEEEecceeeecccCC-C---eEEc------CCC-----cEEecCEEEEccCCCCC
Q 017664 181 GSRASQIALDWLTSKKVEVILNQSVTLNTISD-G---LIET------SSG-----ETIDTDCHFMCTGKAMA 237 (368)
Q Consensus 181 ~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~-~---~v~~------~~g-----~~i~~d~vi~a~G~~p~ 237 (368)
..++...+....-+.|++++..+.+..+-..+ + ++.. ..| -.+++..||-|||....
T Consensus 95 ~~~~~s~L~s~a~~aGakifn~~~vEDvi~r~~~rV~GvViNWt~V~~~glHvDPl~i~ak~ViDaTGHda~ 166 (230)
T PF01946_consen 95 SVEFTSTLASKAIDAGAKIFNLTSVEDVIVREDDRVAGVVINWTPVEMAGLHVDPLTIRAKVVIDATGHDAE 166 (230)
T ss_dssp HHHHHHHHHHHHHTTTEEEEETEEEEEEEEECSCEEEEEEEEEHHHHTT--T-B-EEEEESEEEE---SSSS
T ss_pred HHHHHHHHHHHHhcCCCEEEeeeeeeeeEEEcCCeEEEEEEEehHHhHhhcCCCcceEEEeEEEeCCCCchH
Confidence 01222223444455899999999998776555 3 2222 122 38999999999997754
No 386
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=97.09 E-value=0.00049 Score=67.97 Aligned_cols=45 Identities=16% Similarity=0.116 Sum_probs=34.0
Q ss_pred CCeeecCCCCeEEecccCCCCccchHHHHHHHHHHHHHHHHHHHcC
Q 017664 260 ENLRVRGFKNVFAIGDITDIPEIKQGYLAQKHALVTAKNLKKLMMG 305 (368)
Q Consensus 260 ~~~~~~~~~~ifa~GD~~~~~~~~~~~~a~~~g~~aa~~i~~~l~g 305 (368)
.+.+| +.|++||+|||+......++..+.-+|.+++.++...+..
T Consensus 400 ~~~~T-~i~gLyA~Ge~~~~~~h~l~~nsl~eg~~ag~~a~~~~~~ 444 (614)
T TIGR02061 400 YNRMT-TVEGLFTCGDGVGASPHKFSSGSFTEGRIAAKAAVRWILD 444 (614)
T ss_pred cCCcc-ccCCEEeceecccCcchhhHHhHHHHHHHHHHHHHHHHHh
Confidence 55667 7999999999976433346667777899999888877643
No 387
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=97.09 E-value=0.002 Score=62.14 Aligned_cols=66 Identities=23% Similarity=0.173 Sum_probs=50.7
Q ss_pred EEEEecCcccccccCc-hhHHHHHHHHHcCCcEEEecceeeecccCCC---eEEcCCCcEEecCEEEEccCCCC
Q 017664 167 VILVHRGPKLLEFVGS-RASQIALDWLTSKKVEVILNQSVTLNTISDG---LIETSSGETIDTDCHFMCTGKAM 236 (368)
Q Consensus 167 v~~i~~~~~~l~~~~~-~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~---~v~~~~g~~i~~d~vi~a~G~~p 236 (368)
-.++.+.+.. +|| .+...+....++.|+.++.++.|+++....+ .|.+.-| .+++..++-|+|+-.
T Consensus 174 g~Ly~P~DG~---~DP~~lC~ala~~A~~~GA~viE~cpV~~i~~~~~~~~gVeT~~G-~iet~~~VNaaGvWA 243 (856)
T KOG2844|consen 174 GGLYSPGDGV---MDPAGLCQALARAASALGALVIENCPVTGLHVETDKFGGVETPHG-SIETECVVNAAGVWA 243 (856)
T ss_pred eeeecCCCcc---cCHHHHHHHHHHHHHhcCcEEEecCCcceEEeecCCccceeccCc-ceecceEEechhHHH
Confidence 3445554443 344 4456777888999999999999999987654 7889888 599999999999763
No 388
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=97.09 E-value=0.0052 Score=57.81 Aligned_cols=97 Identities=22% Similarity=0.219 Sum_probs=67.3
Q ss_pred CeEEEEcCchhHHHHHHHHhhh-CCCCeEEEEecCc-c-------------c-------------ccc------------
Q 017664 140 NSVLIVGGGPTGVELAGEIAVD-FPDKKVILVHRGP-K-------------L-------------LEF------------ 179 (368)
Q Consensus 140 ~~v~VvG~g~~~~e~a~~l~~~-~~~~~v~~i~~~~-~-------------~-------------l~~------------ 179 (368)
.+|+|||+|+.|+-+|..|.+. ..+.+|+++++.. . + .+.
T Consensus 4 ~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~ 83 (395)
T PRK05732 4 MDVIIVGGGMAGATLALALSRLSHGGLPVALIEAFAPESDAHPGFDARAIALAAGTCQQLARLGVWQALADCATPITHIH 83 (395)
T ss_pred CCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCCCcccccCCCCCccceeccHHHHHHHHHCCChhhhHhhcCCccEEE
Confidence 4699999999999999998842 1288999999831 1 0 000
Q ss_pred -cC-------------------------chhHHHHHHHHHc-CCcEEEecceeeecccCCC--eEEcCCCcEEecCEEEE
Q 017664 180 -VG-------------------------SRASQIALDWLTS-KKVEVILNQSVTLNTISDG--LIETSSGETIDTDCHFM 230 (368)
Q Consensus 180 -~~-------------------------~~~~~~~~~~l~~-~gv~i~~~~~v~~i~~~~~--~v~~~~g~~i~~d~vi~ 230 (368)
.+ ..+.+.+.+.+++ .|++++.++++..+..+++ .+.+.+|+++.+|.+|.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~g~~~~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~ 163 (395)
T PRK05732 84 VSDRGHAGFVRLDAEDYGVPALGYVVELHDVGQRLFALLDKAPGVTLHCPARVANVERTQGSVRVTLDDGETLTGRLLVA 163 (395)
T ss_pred EecCCCCceEEeehhhcCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEE
Confidence 00 0011223334444 5799999999988876554 57778888899999999
Q ss_pred ccCCCC
Q 017664 231 CTGKAM 236 (368)
Q Consensus 231 a~G~~p 236 (368)
|.|...
T Consensus 164 AdG~~S 169 (395)
T PRK05732 164 ADGSHS 169 (395)
T ss_pred ecCCCh
Confidence 999764
No 389
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=97.08 E-value=0.0054 Score=57.96 Aligned_cols=96 Identities=17% Similarity=0.330 Sum_probs=68.2
Q ss_pred CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecC-cc-------------c-------c------ccc-----------
Q 017664 139 ANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRG-PK-------------L-------L------EFV----------- 180 (368)
Q Consensus 139 ~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~-~~-------------~-------l------~~~----------- 180 (368)
..+|+|||+|+.|+-+|..|.+ .|.+|+++++. +. + + +.+
T Consensus 4 ~~dV~IvGaG~~Gl~~A~~L~~--~G~~v~viE~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~ 81 (405)
T PRK08850 4 SVDVAIIGGGMVGLALAAALKE--SDLRIAVIEGQLPEEALNELPDVRVSALSRSSEHILRNLGAWQGIEARRAAPYIAM 81 (405)
T ss_pred cCCEEEECccHHHHHHHHHHHh--CCCEEEEEcCCCCcccccCCCCcceecccHHHHHHHHhCCchhhhhhhhCCcccEE
Confidence 3579999999999999999885 58899999874 10 0 0 000
Q ss_pred ---Cc-------------------------hhHHHHHHHHHc-CCcEEEecceeeecccCCC--eEEcCCCcEEecCEEE
Q 017664 181 ---GS-------------------------RASQIALDWLTS-KKVEVILNQSVTLNTISDG--LIETSSGETIDTDCHF 229 (368)
Q Consensus 181 ---~~-------------------------~~~~~~~~~l~~-~gv~i~~~~~v~~i~~~~~--~v~~~~g~~i~~d~vi 229 (368)
+. .+.+.+.+.+.+ .|++++.+++++.++.+++ .+.+.+|+++.+|++|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~v~~~~g~~~~a~lvI 161 (405)
T PRK08850 82 EVWEQDSFARIEFDAESMAQPDLGHIVENRVIQLALLEQVQKQDNVTLLMPARCQSIAVGESEAWLTLDNGQALTAKLVV 161 (405)
T ss_pred EEEeCCCCceEEEeccccCCCccEEEEEHHHHHHHHHHHHhcCCCeEEEcCCeeEEEEeeCCeEEEEECCCCEEEeCEEE
Confidence 00 011223344444 4799999999998876554 6788899999999999
Q ss_pred EccCCCC
Q 017664 230 MCTGKAM 236 (368)
Q Consensus 230 ~a~G~~p 236 (368)
.|.|...
T Consensus 162 gADG~~S 168 (405)
T PRK08850 162 GADGANS 168 (405)
T ss_pred EeCCCCC
Confidence 9999753
No 390
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=97.07 E-value=0.0036 Score=59.35 Aligned_cols=95 Identities=22% Similarity=0.217 Sum_probs=64.0
Q ss_pred eEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccc-----cCc---------------------------------
Q 017664 141 SVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEF-----VGS--------------------------------- 182 (368)
Q Consensus 141 ~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~-----~~~--------------------------------- 182 (368)
+|+|||+|..|+-+|..|.+. .+.+|+++++.+.+.+. +.+
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~-g~~~v~v~Er~~~~~~~G~gi~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~~~~~~~ 80 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKH-SHLNVQLFEAAPAFGEVGAGVSFGANAVRAIVGLGLGEAYTQVADSTPAPWQDIWFEW 80 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhc-CCCCEEEEecCCcCCCCccceeeCccHHHHHHHcCChhHHHHHhcCCCccCcceeEEE
Confidence 699999999999999999852 23589999987542100 000
Q ss_pred ---h-----------------h-HHHHHHHHHc--CCcEEEecceeeecccCCC--eEEcCCCcEEecCEEEEccCCCC
Q 017664 183 ---R-----------------A-SQIALDWLTS--KKVEVILNQSVTLNTISDG--LIETSSGETIDTDCHFMCTGKAM 236 (368)
Q Consensus 183 ---~-----------------~-~~~~~~~l~~--~gv~i~~~~~v~~i~~~~~--~v~~~~g~~i~~d~vi~a~G~~p 236 (368)
. + ...+.+.|.+ .+..++.++++..++.+++ .+.+.+|+++++|.||.|.|...
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vVgADG~~S 159 (414)
T TIGR03219 81 RNGSDASYLGATIAPGVGQSSVHRADFLDALLKHLPEGIASFGKRATQIEEQAEEVQVLFTDGTEYRCDLLIGADGIKS 159 (414)
T ss_pred EecCccceeeeeccccCCcccCCHHHHHHHHHHhCCCceEEcCCEEEEEEecCCcEEEEEcCCCEEEeeEEEECCCccH
Confidence 0 0 0112222221 1456778888888876554 67788898999999999999653
No 391
>PRK06185 hypothetical protein; Provisional
Probab=97.05 E-value=0.0061 Score=57.62 Aligned_cols=96 Identities=20% Similarity=0.232 Sum_probs=65.8
Q ss_pred CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccc----------------------------c------------
Q 017664 139 ANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLL----------------------------E------------ 178 (368)
Q Consensus 139 ~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l----------------------------~------------ 178 (368)
..+|+|||+|++|+-+|..|++ .+.+|+++++.+... .
T Consensus 6 ~~dV~IvGgG~~Gl~~A~~La~--~G~~v~liE~~~~~~~~~r~~~l~~~s~~~L~~lG~~~~~~~~~~~~~~~~~~~~~ 83 (407)
T PRK06185 6 TTDCCIVGGGPAGMMLGLLLAR--AGVDVTVLEKHADFLRDFRGDTVHPSTLELMDELGLLERFLELPHQKVRTLRFEIG 83 (407)
T ss_pred cccEEEECCCHHHHHHHHHHHh--CCCcEEEEecCCccCccccCceeChhHHHHHHHcCChhHHhhcccceeeeEEEEEC
Confidence 4579999999999999999885 478888888753210 0
Q ss_pred c-------c--------------CchhHHHHHHHHHc-CCcEEEecceeeecccCCCe---E--EcCCCc-EEecCEEEE
Q 017664 179 F-------V--------------GSRASQIALDWLTS-KKVEVILNQSVTLNTISDGL---I--ETSSGE-TIDTDCHFM 230 (368)
Q Consensus 179 ~-------~--------------~~~~~~~~~~~l~~-~gv~i~~~~~v~~i~~~~~~---v--~~~~g~-~i~~d~vi~ 230 (368)
. + ...+.+.+.+.+++ .|++++.++.+..+..+++. + .+.+|+ ++.+|.+|.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~~~v~i~~~~~v~~~~~~~~~v~~v~~~~~~g~~~i~a~~vI~ 163 (407)
T PRK06185 84 GRTVTLADFSRLPTPYPYIAMMPQWDFLDFLAEEASAYPNFTLRMGAEVTGLIEEGGRVTGVRARTPDGPGEIRADLVVG 163 (407)
T ss_pred CeEEEecchhhcCCCCCcEEEeehHHHHHHHHHHHhhCCCcEEEeCCEEEEEEEeCCEEEEEEEEcCCCcEEEEeCEEEE
Confidence 0 0 00112233444444 48999999999988766552 3 345664 799999999
Q ss_pred ccCCCC
Q 017664 231 CTGKAM 236 (368)
Q Consensus 231 a~G~~p 236 (368)
|.|...
T Consensus 164 AdG~~S 169 (407)
T PRK06185 164 ADGRHS 169 (407)
T ss_pred CCCCch
Confidence 999763
No 392
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=97.04 E-value=0.0025 Score=63.52 Aligned_cols=98 Identities=13% Similarity=0.069 Sum_probs=58.6
Q ss_pred CCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeeccceeeeecccccccceeecccccCceeEEEe-EEEEeecc
Q 017664 16 KKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITWASLRAVVEPSFAVRSVINHGDYLSNVKIVVS-TAVSITDT 93 (368)
Q Consensus 16 ~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 93 (368)
..+++|||||+.|+-.|..|+ .|.+|++||+.+.+... .++... +.+........+++++.. .+..++..
T Consensus 312 pk~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~ll~~-------~d~eis-~~l~~~ll~~~GV~I~~~~~V~~I~~~ 383 (659)
T PTZ00153 312 QNYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQLLPL-------LDADVA-KYFERVFLKSKPVRVHLNTLIEYVRAG 383 (659)
T ss_pred CCceEEECCCHHHHHHHHHHHhCCCeEEEEeccCccccc-------CCHHHH-HHHHHHHhhcCCcEEEcCCEEEEEEec
Confidence 458999999999999999887 49999999998764311 111110 000000000124554433 33344321
Q ss_pred ------EEEec-------CC--------eEEEecEEEEecCCCCCCCCc
Q 017664 94 ------EVVTA-------GG--------QTFVYDYVVVATGHVESVPKS 121 (368)
Q Consensus 94 ------~v~~~-------~g--------~~~~~d~lvlAtG~~~~~p~~ 121 (368)
.+.+. ++ +.+++|.+++|+|..|+...+
T Consensus 384 ~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~i~aD~VlvAtGr~Pnt~~L 432 (659)
T PTZ00153 384 KGNQPVIIGHSERQTGESDGPKKNMNDIKETYVDSCLVATGRKPNTNNL 432 (659)
T ss_pred CCceEEEEEEeccccccccccccccccceEEEcCEEEEEECcccCCccC
Confidence 12211 11 369999999999999987664
No 393
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=97.04 E-value=0.00067 Score=72.31 Aligned_cols=38 Identities=26% Similarity=0.437 Sum_probs=33.5
Q ss_pred CCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceee
Q 017664 15 EKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEI 52 (368)
Q Consensus 15 ~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~ 52 (368)
...||||||+|.||++||..++ .|.+|+|+||.+..++
T Consensus 408 ~~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~~GG 446 (1167)
T PTZ00306 408 LPARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKLGG 446 (1167)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCCCCC
Confidence 4689999999999999999887 5999999999987553
No 394
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=97.03 E-value=0.0054 Score=57.31 Aligned_cols=94 Identities=20% Similarity=0.270 Sum_probs=66.3
Q ss_pred eEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCc----cc----------------c--------------c--------
Q 017664 141 SVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGP----KL----------------L--------------E-------- 178 (368)
Q Consensus 141 ~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~----~~----------------l--------------~-------- 178 (368)
+|+|||+|+.|+-+|..|.+ .+.+|+++++.+ .+ + +
T Consensus 3 dV~IvGgG~~Gl~~A~~L~~--~G~~v~l~E~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~ 80 (374)
T PRK06617 3 NTVILGCGLSGMLTALSFAQ--KGIKTTIFESKSVKSPEFFKDIRTTALTPHSKNFLFSIDIWEELEKFVAEMQDIYVVD 80 (374)
T ss_pred cEEEECCCHHHHHHHHHHHc--CCCeEEEecCCCCCCCccCcCceEEEeCHHHHHHHHHCCcHHHHHhhcCCCcEEEEEE
Confidence 58999999999999999884 578999998641 10 0 0
Q ss_pred -c------c-------------CchhHHHHHHHHHcC-CcEEEecceeeecccCCC--eEEcCCCcEEecCEEEEccCCC
Q 017664 179 -F------V-------------GSRASQIALDWLTSK-KVEVILNQSVTLNTISDG--LIETSSGETIDTDCHFMCTGKA 235 (368)
Q Consensus 179 -~------~-------------~~~~~~~~~~~l~~~-gv~i~~~~~v~~i~~~~~--~v~~~~g~~i~~d~vi~a~G~~ 235 (368)
. + -..+.+.+.+.+++. +++++.+++++++..+++ .+.++++ ++.+|+||-|-|..
T Consensus 81 ~~g~~~~~~~~~~~~~~g~~v~r~~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~~~~-~~~adlvIgADG~~ 159 (374)
T PRK06617 81 NKASEILDLRNDADAVLGYVVKNSDFKKILLSKITNNPLITLIDNNQYQEVISHNDYSIIKFDDK-QIKCNLLIICDGAN 159 (374)
T ss_pred CCCceEEEecCCCCCCcEEEEEHHHHHHHHHHHHhcCCCcEEECCCeEEEEEEcCCeEEEEEcCC-EEeeCEEEEeCCCC
Confidence 0 0 011223344555555 489999999988866554 6677776 89999999999976
Q ss_pred CC
Q 017664 236 MA 237 (368)
Q Consensus 236 p~ 237 (368)
..
T Consensus 160 S~ 161 (374)
T PRK06617 160 SK 161 (374)
T ss_pred ch
Confidence 43
No 395
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=97.03 E-value=0.00062 Score=64.77 Aligned_cols=103 Identities=24% Similarity=0.263 Sum_probs=25.5
Q ss_pred eEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccc------------------------------------------
Q 017664 141 SVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLE------------------------------------------ 178 (368)
Q Consensus 141 ~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~------------------------------------------ 178 (368)
.|+|||||+.|+-.|...++ .|.+|.++++.+.+..
T Consensus 1 DVVVvGgG~aG~~AAi~AAr--~G~~VlLiE~~~~lGG~~t~~~~~~~~~~~~~~~~~~gi~~e~~~~~~~~~~~~~~~~ 78 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAAR--AGAKVLLIEKGGFLGGMATSGGVSPFDGNHDEDQVIGGIFREFLNRLRARGGYPQEDR 78 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHH--TTS-EEEE-SSSSSTGGGGGSSS-EETTEEHHHHHHHHHHHHHHHST-----------
T ss_pred CEEEECccHHHHHHHHHHHH--CCCEEEEEECCccCCCcceECCcCChhhcchhhccCCCHHHHHHHHHhhhcccccccc
Confidence 48999999999999998885 5899999998864310
Q ss_pred -------ccCch-hHHHHHHHHHcCCcEEEecceeeecccCCC---eEEcCC---CcEEecCEEEEccCCCCCchhhhcc
Q 017664 179 -------FVGSR-ASQIALDWLTSKKVEVILNQSVTLNTISDG---LIETSS---GETIDTDCHFMCTGKAMASSWLRET 244 (368)
Q Consensus 179 -------~~~~~-~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~---~v~~~~---g~~i~~d~vi~a~G~~p~~~~~~~~ 244 (368)
.+++. +...+.+.+++.|++++.++.+..+..+++ .|.+.+ ..++.++.+|-|||. -++....
T Consensus 79 ~~~~~~~~~~~~~~~~~l~~~l~e~gv~v~~~t~v~~v~~~~~~i~~V~~~~~~g~~~i~A~~~IDaTG~---g~l~~~a 155 (428)
T PF12831_consen 79 YGWVSNVPFDPEVFKAVLDEMLAEAGVEVLLGTRVVDVIRDGGRITGVIVETKSGRKEIRAKVFIDATGD---GDLAALA 155 (428)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc---ccccccc
Confidence 01111 111244566788999999999999888765 454443 358999999999994 3455555
Q ss_pred cccc
Q 017664 245 ILKD 248 (368)
Q Consensus 245 ~l~~ 248 (368)
+++.
T Consensus 156 G~~~ 159 (428)
T PF12831_consen 156 GAPY 159 (428)
T ss_dssp ----
T ss_pred cccc
Confidence 5543
No 396
>PRK07512 L-aspartate oxidase; Provisional
Probab=97.02 E-value=0.00061 Score=66.29 Aligned_cols=50 Identities=18% Similarity=0.232 Sum_probs=37.8
Q ss_pred CCcEEeCCCeeecCCCCeEEecccCC--CCcc-----chHHHHHHHHHHHHHHHHHHH
Q 017664 253 RGRLMVDENLRVRGFKNVFAIGDITD--IPEI-----KQGYLAQKHALVTAKNLKKLM 303 (368)
Q Consensus 253 ~g~i~vd~~~~~~~~~~ifa~GD~~~--~~~~-----~~~~~a~~~g~~aa~~i~~~l 303 (368)
.|.+.+|.+.|+ +.|++||+|+|+. .... .....+.-.|+.|++++....
T Consensus 341 ~GGi~vd~~~~t-~I~GLyAaGE~a~~G~hGanrl~gnsl~~~~v~G~~ag~~aa~~~ 397 (513)
T PRK07512 341 MGGIAVDADGRS-SLPGLWAAGEVASTGLHGANRLASNSLLEAVVFAARAAEDIAGTP 397 (513)
T ss_pred cCCEEECCCCcc-ccCCEEecccccccCCCcccchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 478999999998 7999999999973 2111 123457788999999998764
No 397
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=97.02 E-value=0.0006 Score=67.24 Aligned_cols=52 Identities=13% Similarity=0.104 Sum_probs=39.3
Q ss_pred CCcEEeCCCeeecCCCCeEEecccCCCC--c-----cchHHHHHHHHHHHHHHHHHHHcC
Q 017664 253 RGRLMVDENLRVRGFKNVFAIGDITDIP--E-----IKQGYLAQKHALVTAKNLKKLMMG 305 (368)
Q Consensus 253 ~g~i~vd~~~~~~~~~~ifa~GD~~~~~--~-----~~~~~~a~~~g~~aa~~i~~~l~g 305 (368)
.|.+.+|.+.|| +.|++||+|+|+... . -.....+.-.|+.|++++......
T Consensus 357 ~GGi~~d~~~~t-~i~GLyAaGe~a~~G~hGanrl~g~sl~~~~v~G~~ag~~aa~~~~~ 415 (580)
T TIGR01176 357 MGGIETDINCET-RIKGLFAVGECASVGLHGANRLGSNSLAELVVFGRRAGEAAAERAAR 415 (580)
T ss_pred CCCeeECcCccc-ccCCeEeeecccccCcCCCccccchhHHHHHHHHHHHHHHHHHhhcc
Confidence 577999999998 799999999996421 1 123456788899999998876543
No 398
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=97.01 E-value=0.00059 Score=67.44 Aligned_cols=52 Identities=15% Similarity=0.178 Sum_probs=40.1
Q ss_pred CCcEEeCCCeeecCCCCeEEecccCCCC--c-----cchHHHHHHHHHHHHHHHHHHHcC
Q 017664 253 RGRLMVDENLRVRGFKNVFAIGDITDIP--E-----IKQGYLAQKHALVTAKNLKKLMMG 305 (368)
Q Consensus 253 ~g~i~vd~~~~~~~~~~ifa~GD~~~~~--~-----~~~~~~a~~~g~~aa~~i~~~l~g 305 (368)
.|.|.||.+.|+ +.|++||+|+|++.. . ......|.-.|+.|+++++..+.+
T Consensus 358 ~GGi~vd~~~~t-~i~GLyAaGe~~~~g~hGanrlggnsl~~a~v~Gr~Ag~~aa~~~~~ 416 (582)
T PRK09231 358 MGGIETDQNCET-RIKGLFAVGECSSVGLHGANRLGSNSLAELVVFGRVAGEQAAERAAT 416 (582)
T ss_pred CCCEEECCCCcc-ccCCEEecccccccccCCCCCcchhHHHHHHHHHHHHHHHHHHhhhc
Confidence 578999999998 799999999997421 1 123356788999999999887644
No 399
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=97.01 E-value=0.0019 Score=65.58 Aligned_cols=89 Identities=18% Similarity=0.324 Sum_probs=69.1
Q ss_pred cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccc---------ccCchhHHHHHHHHHcCCcEEEecceeeec
Q 017664 138 SANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLE---------FVGSRASQIALDWLTSKKVEVILNQSVTLN 208 (368)
Q Consensus 138 ~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~---------~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i 208 (368)
.+++|.|||+|++|+-+|..|.+ .+..|++++|.++... ..|....+.-.+.+++.||++.+++.|-+-
T Consensus 1784 tg~~vaiigsgpaglaaadqlnk--~gh~v~vyer~dr~ggll~ygipnmkldk~vv~rrv~ll~~egi~f~tn~eigk~ 1861 (2142)
T KOG0399|consen 1784 TGKRVAIIGSGPAGLAAADQLNK--AGHTVTVYERSDRVGGLLMYGIPNMKLDKFVVQRRVDLLEQEGIRFVTNTEIGKH 1861 (2142)
T ss_pred cCcEEEEEccCchhhhHHHHHhh--cCcEEEEEEecCCcCceeeecCCccchhHHHHHHHHHHHHhhCceEEeecccccc
Confidence 36999999999999999999984 5899999999988632 245556666778899999999999876421
Q ss_pred ccCCCeEEcCCCcEEecCEEEEccCCC
Q 017664 209 TISDGLIETSSGETIDTDCHFMCTGKA 235 (368)
Q Consensus 209 ~~~~~~v~~~~g~~i~~d~vi~a~G~~ 235 (368)
+ .-|+-.-+.|.+++|+|..
T Consensus 1862 ------v-s~d~l~~~~daiv~a~gst 1881 (2142)
T KOG0399|consen 1862 ------V-SLDELKKENDAIVLATGST 1881 (2142)
T ss_pred ------c-cHHHHhhccCeEEEEeCCC
Confidence 1 1233345689999999975
No 400
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=97.00 E-value=0.0011 Score=60.38 Aligned_cols=103 Identities=22% Similarity=0.277 Sum_probs=74.2
Q ss_pred CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccccCchhHHHH-------------------------------
Q 017664 140 NSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIA------------------------------- 188 (368)
Q Consensus 140 ~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~------------------------------- 188 (368)
-..+|+|+|..+...+..+..+-.+..|.+|...++ +|.+-|.++..+
T Consensus 179 vp~liigggtaAfaa~rai~s~da~A~vl~iseepe-lPYmRPPLSKELW~~~dpn~~k~lrfkqwsGkeRsiffepd~F 257 (659)
T KOG1346|consen 179 VPYLIIGGGTAAFAAFRAIKSNDATAKVLMISEEPE-LPYMRPPLSKELWWYGDPNSAKKLRFKQWSGKERSIFFEPDGF 257 (659)
T ss_pred CceeEEcCCchhhhcccccccCCCCceEEeeccCcc-CcccCCCcchhceecCCCChhhheeecccCCccceeEecCCcc
Confidence 346999999988877777765445667777765544 232222222221
Q ss_pred ------HHHHHcCCcEEEecceeeecccCCCeEEcCCCcEEecCEEEEccCCCCCc-hhhhc
Q 017664 189 ------LDWLTSKKVEVILNQSVTLNTISDGLIETSSGETIDTDCHFMCTGKAMAS-SWLRE 243 (368)
Q Consensus 189 ------~~~l~~~gv~i~~~~~v~~i~~~~~~v~~~~g~~i~~d~vi~a~G~~p~~-~~~~~ 243 (368)
.......||.+..+.++..+...+..|.++||.+|.+|-+++|||.+|.. +.+..
T Consensus 258 fvspeDLp~~~nGGvAvl~G~kvvkid~~d~~V~LnDG~~I~YdkcLIATG~~Pk~l~~~~~ 319 (659)
T KOG1346|consen 258 FVSPEDLPKAVNGGVAVLRGRKVVKIDEEDKKVILNDGTTIGYDKCLIATGVRPKKLQVFEE 319 (659)
T ss_pred eeChhHCcccccCceEEEeccceEEeecccCeEEecCCcEeehhheeeecCcCcccchhhhh
Confidence 12345679999999999999888889999999999999999999999853 34433
No 401
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=97.00 E-value=0.00081 Score=60.63 Aligned_cols=34 Identities=32% Similarity=0.538 Sum_probs=30.8
Q ss_pred CCCcEEEECCChHHHHHHHHhhc-CCcEEEEcCCC
Q 017664 15 EKKKVVVIGGGVGGSLLAYHIQS-FADVVLIDEKE 48 (368)
Q Consensus 15 ~~~~vvIIGaG~aGl~aA~~L~~-g~~v~lie~~~ 48 (368)
...||+|||||.+|.+.|+.|.+ |.+|.||||+=
T Consensus 44 ~~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERDl 78 (509)
T KOG1298|consen 44 GAADVIIVGAGVAGSALAYALAKDGRRVHVIERDL 78 (509)
T ss_pred CcccEEEECCcchHHHHHHHHhhCCcEEEEEeccc
Confidence 36899999999999999999985 99999999873
No 402
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=97.00 E-value=0.00081 Score=65.59 Aligned_cols=38 Identities=29% Similarity=0.299 Sum_probs=33.7
Q ss_pred CCCCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCce
Q 017664 13 LVEKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYF 50 (368)
Q Consensus 13 ~~~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~ 50 (368)
+..++||||||||.|||.||..++ .|.+|+|+||....
T Consensus 3 ~~~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~ 41 (562)
T COG1053 3 TIHEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPK 41 (562)
T ss_pred ccccCCEEEECCcHHHHHHHHHHHhcCCcEEEEEccccC
Confidence 346789999999999999999998 59999999998753
No 403
>PLN02976 amine oxidase
Probab=96.99 E-value=0.00079 Score=70.90 Aligned_cols=40 Identities=25% Similarity=0.409 Sum_probs=35.6
Q ss_pred CCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeec
Q 017664 15 EKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITW 54 (368)
Q Consensus 15 ~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~ 54 (368)
..++|+|||||++|+++|+.|+ .|++|+|+|+++.+|+.+
T Consensus 692 ~~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~vGGri 732 (1713)
T PLN02976 692 DRKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRIGGRV 732 (1713)
T ss_pred CCCcEEEECchHHHHHHHHHHHHCCCcEEEEeeccCCCCce
Confidence 3579999999999999999998 599999999998887654
No 404
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=96.98 E-value=0.0081 Score=56.52 Aligned_cols=95 Identities=17% Similarity=0.216 Sum_probs=66.4
Q ss_pred CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccc------------------c--------------c---------
Q 017664 140 NSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKL------------------L--------------E--------- 178 (368)
Q Consensus 140 ~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~------------------l--------------~--------- 178 (368)
.+|+|||+|+.|+-+|..|.+ .+.+|+++++.+.. + +
T Consensus 3 ~dV~IvGaGpaGl~~A~~L~~--~G~~v~v~E~~~~~~~~~~~~a~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~ 80 (392)
T PRK08243 3 TQVAIIGAGPAGLLLGQLLHL--AGIDSVVLERRSREYVEGRIRAGVLEQGTVDLLREAGVGERMDREGLVHDGIELRFD 80 (392)
T ss_pred ceEEEECCCHHHHHHHHHHHh--cCCCEEEEEcCCccccccccceeEECHhHHHHHHHcCChHHHHhcCCccCcEEEEEC
Confidence 579999999999999999885 58889998876421 0 0
Q ss_pred ------cc-------------CchhHHHHHHHHHcCCcEEEecceeeeccc-CCC--eEEc-CCCc--EEecCEEEEccC
Q 017664 179 ------FV-------------GSRASQIALDWLTSKKVEVILNQSVTLNTI-SDG--LIET-SSGE--TIDTDCHFMCTG 233 (368)
Q Consensus 179 ------~~-------------~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~-~~~--~v~~-~~g~--~i~~d~vi~a~G 233 (368)
.+ .+.+.+.+.+..++.|++++.++++++++. +++ .+.+ .+|+ ++++|+||-|-|
T Consensus 81 g~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~a~~~gv~v~~~~~v~~i~~~~~~~~~V~~~~~G~~~~i~ad~vVgADG 160 (392)
T PRK08243 81 GRRHRIDLTELTGGRAVTVYGQTEVTRDLMAARLAAGGPIRFEASDVALHDFDSDRPYVTYEKDGEEHRLDCDFIAGCDG 160 (392)
T ss_pred CEEEEeccccccCCceEEEeCcHHHHHHHHHHHHhCCCeEEEeeeEEEEEecCCCceEEEEEcCCeEEEEEeCEEEECCC
Confidence 00 011223344445678999999999988765 333 5555 4664 689999999999
Q ss_pred CCC
Q 017664 234 KAM 236 (368)
Q Consensus 234 ~~p 236 (368)
...
T Consensus 161 ~~S 163 (392)
T PRK08243 161 FHG 163 (392)
T ss_pred CCC
Confidence 753
No 405
>PLN02785 Protein HOTHEAD
Probab=96.92 E-value=0.0012 Score=64.98 Aligned_cols=36 Identities=25% Similarity=0.397 Sum_probs=32.6
Q ss_pred CCCCcEEEECCChHHHHHHHHhhcCCcEEEEcCCCc
Q 017664 14 VEKKKVVVIGGGVGGSLLAYHIQSFADVVLIDEKEY 49 (368)
Q Consensus 14 ~~~~~vvIIGaG~aGl~aA~~L~~g~~v~lie~~~~ 49 (368)
...+|+||||||.||+.+|.+|..+.+|+|||+++.
T Consensus 53 ~~~yD~IIVG~G~aG~~lA~~Ls~~~~VLllE~G~~ 88 (587)
T PLN02785 53 DSAYDYIVVGGGTAGCPLAATLSQNFSVLLLERGGV 88 (587)
T ss_pred cccCCEEEECcCHHHHHHHHHHhcCCcEEEEecCCC
Confidence 346999999999999999999988899999999874
No 406
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=96.90 E-value=0.01 Score=58.13 Aligned_cols=93 Identities=18% Similarity=0.266 Sum_probs=63.4
Q ss_pred eEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccc------------------cc---cC------------------
Q 017664 141 SVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLL------------------EF---VG------------------ 181 (368)
Q Consensus 141 ~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l------------------~~---~~------------------ 181 (368)
.|+|||+|++|+++|..+++ .+.+|.++++..... .. +.
T Consensus 2 DViVIGaG~AGl~aA~ala~--~G~~v~Lie~~~~~~g~~~c~ps~gG~a~g~l~rEidaLGG~~~~~~d~~~i~~r~ln 79 (617)
T TIGR00136 2 DVIVIGGGHAGCEAALAAAR--MGAKTLLLTLNLDTIGKCSCNPAIGGPAKGILVKEIDALGGLMGKAADKAGLQFRVLN 79 (617)
T ss_pred eEEEECccHHHHHHHHHHHH--CCCCEEEEecccccccCCCccccccccccchhhhhhhcccchHHHHHHhhceeheecc
Confidence 48999999999999999885 477888887642100 00 00
Q ss_pred ----c------------hhHHHHHHHHHcC-CcEEEecceeeecccC-CC---eEEcCCCcEEecCEEEEccCCCC
Q 017664 182 ----S------------RASQIALDWLTSK-KVEVILNQSVTLNTIS-DG---LIETSSGETIDTDCHFMCTGKAM 236 (368)
Q Consensus 182 ----~------------~~~~~~~~~l~~~-gv~i~~~~~v~~i~~~-~~---~v~~~~g~~i~~d~vi~a~G~~p 236 (368)
+ .+...+.+.+++. |++++.+. +..+..+ ++ .|.+.+|..+.||.||+|||.-.
T Consensus 80 ~skgpAV~~~RaQVDr~~y~~~L~e~Le~~pgV~Ile~~-Vv~li~e~~g~V~GV~t~~G~~I~Ad~VILATGtfL 154 (617)
T TIGR00136 80 SSKGPAVRATRAQIDKVLYRKAMRNALENQPNLSLFQGE-VEDLILEDNDEIKGVVTQDGLKFRAKAVIITTGTFL 154 (617)
T ss_pred cCCCCcccccHHhCCHHHHHHHHHHHHHcCCCcEEEEeE-EEEEEEecCCcEEEEEECCCCEEECCEEEEccCccc
Confidence 1 1112345556665 88888664 5555433 33 68888898999999999999763
No 407
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=96.89 E-value=0.004 Score=58.66 Aligned_cols=55 Identities=25% Similarity=0.298 Sum_probs=40.7
Q ss_pred chhHHHHHHHHHcCCcEEEecceeeecccCC--C-----eEE-cCCCc--EEe---cCEEEEccCCCC
Q 017664 182 SRASQIALDWLTSKKVEVILNQSVTLNTISD--G-----LIE-TSSGE--TID---TDCHFMCTGKAM 236 (368)
Q Consensus 182 ~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~--~-----~v~-~~~g~--~i~---~d~vi~a~G~~p 236 (368)
+.+...+.++|+++||+++.+++|+.+..+. + .+. ..+|. +++ -|.|+++.|..-
T Consensus 207 eSii~Pl~~~L~~~GV~F~~~t~V~di~~~~~~~~~~~~~i~~~~~g~~~~i~l~~~DlV~vT~GS~t 274 (500)
T PF06100_consen 207 ESIILPLIRYLKSQGVDFRFNTKVTDIDFDITGDKKTATRIHIEQDGKEETIDLGPDDLVFVTNGSMT 274 (500)
T ss_pred HHHHHHHHHHHHHCCCEEECCCEEEEEEEEccCCCeeEEEEEEEcCCCeeEEEeCCCCEEEEECCccc
Confidence 4778889999999999999999999887642 2 222 24443 333 789999998653
No 408
>PLN02546 glutathione reductase
Probab=96.86 E-value=0.0026 Score=62.38 Aligned_cols=96 Identities=17% Similarity=0.165 Sum_probs=58.2
Q ss_pred CCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeeccceeeeecccccccceeecccccCceeEEEe-EEEEee--
Q 017664 16 KKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITWASLRAVVEPSFAVRSVINHGDYLSNVKIVVS-TAVSIT-- 91 (368)
Q Consensus 16 ~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-- 91 (368)
..+++|||||+.|+-.|..|+ .+.+|+|+++.+.+... .++........... ..+++++.. .+..+.
T Consensus 252 ~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~il~~-------~d~~~~~~l~~~L~--~~GV~i~~~~~v~~i~~~ 322 (558)
T PLN02546 252 PEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVLRG-------FDEEVRDFVAEQMS--LRGIEFHTEESPQAIIKS 322 (558)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeccccccc-------cCHHHHHHHHHHHH--HCCcEEEeCCEEEEEEEc
Confidence 468999999999999999987 49999999988754211 11111000000011 125655432 333342
Q ss_pred -cc--EEEecCCeEEEecEEEEecCCCCCCCC
Q 017664 92 -DT--EVVTAGGQTFVYDYVVVATGHVESVPK 120 (368)
Q Consensus 92 -~~--~v~~~~g~~~~~d~lvlAtG~~~~~p~ 120 (368)
.. .+.+.++....+|.+++|+|..|+...
T Consensus 323 ~~g~v~v~~~~g~~~~~D~Viva~G~~Pnt~~ 354 (558)
T PLN02546 323 ADGSLSLKTNKGTVEGFSHVMFATGRKPNTKN 354 (558)
T ss_pred CCCEEEEEECCeEEEecCEEEEeeccccCCCc
Confidence 12 233444444558999999999987754
No 409
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=96.86 E-value=0.0012 Score=64.48 Aligned_cols=62 Identities=11% Similarity=0.108 Sum_probs=45.1
Q ss_pred HHHHHHHHcCCcEEEecceeeecccCCC-----eEEcCCC---c-EEecCEEEEccCCCCCchhhhccccc
Q 017664 186 QIALDWLTSKKVEVILNQSVTLNTISDG-----LIETSSG---E-TIDTDCHFMCTGKAMASSWLRETILK 247 (368)
Q Consensus 186 ~~~~~~l~~~gv~i~~~~~v~~i~~~~~-----~v~~~~g---~-~i~~d~vi~a~G~~p~~~~~~~~~l~ 247 (368)
..+...++..++.+.+++.++++..+.+ .+...++ + ...++.+|+++|...++.++..++.+
T Consensus 207 a~l~~a~~~~nl~v~t~a~v~ri~~~~~r~~gv~~~~~~~~~~~~~~a~~~viL~AGai~Sp~LL~~Sgig 277 (542)
T COG2303 207 AYLKPALKRPNLTLLTGARVRRILLEGDRAVGVEVEIGDGGTIETAVAAREVVLAAGAINSPKLLLLSGIG 277 (542)
T ss_pred hcchhHhcCCceEEecCCEEEEEEEECCeeEEEEEEeCCCCceEEEecCceEEEeccccCCHHHHHhcCCC
Confidence 3444567788899999999999988776 3333333 2 35689999999988777777666643
No 410
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=96.86 E-value=0.0016 Score=64.39 Aligned_cols=39 Identities=31% Similarity=0.422 Sum_probs=34.1
Q ss_pred CCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeee
Q 017664 15 EKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEIT 53 (368)
Q Consensus 15 ~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~ 53 (368)
.++||+|||+|++|+++|..++ +|.+|+|||+++..+..
T Consensus 15 ~~~dvvvvG~G~aG~~aa~~~~~~g~~v~l~ek~~~~gg~ 54 (578)
T PRK12843 15 AEFDVIVIGAGAAGMSAALFAAIAGLKVLLVERTEYVGGT 54 (578)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCc
Confidence 3679999999999999999887 59999999998876543
No 411
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=96.83 E-value=0.0031 Score=64.54 Aligned_cols=34 Identities=21% Similarity=0.339 Sum_probs=30.8
Q ss_pred cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecC
Q 017664 138 SANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRG 173 (368)
Q Consensus 138 ~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~ 173 (368)
.+++|+|||+|+.|+.+|..|.+ .|.+|+++++.
T Consensus 382 tgKKVaVVGaGPAGLsAA~~La~--~Gh~Vtv~E~~ 415 (1028)
T PRK06567 382 TNYNILVTGLGPAGFSLSYYLLR--SGHNVTAIDGL 415 (1028)
T ss_pred CCCeEEEECcCHHHHHHHHHHHh--CCCeEEEEccc
Confidence 57899999999999999999985 59999999974
No 412
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=96.80 E-value=0.0042 Score=58.35 Aligned_cols=34 Identities=35% Similarity=0.499 Sum_probs=29.9
Q ss_pred eEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccc
Q 017664 141 SVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKL 176 (368)
Q Consensus 141 ~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~ 176 (368)
+|+|||+|..|+++|..|++ .|.+|+++++.+..
T Consensus 2 ~VvVIGgGlAGleaA~~LAr--~G~~V~LiE~rp~~ 35 (433)
T TIGR00137 2 PVHVIGGGLAGSEAAWQLAQ--AGVPVILYEMRPEK 35 (433)
T ss_pred CEEEECCCHHHHHHHHHHHh--CCCcEEEEeccccc
Confidence 68999999999999999985 58999999976653
No 413
>PRK11445 putative oxidoreductase; Provisional
Probab=96.78 E-value=0.015 Score=53.74 Aligned_cols=93 Identities=24% Similarity=0.213 Sum_probs=62.3
Q ss_pred eEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccc--c---------------------cc-----------------
Q 017664 141 SVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLL--E---------------------FV----------------- 180 (368)
Q Consensus 141 ~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l--~---------------------~~----------------- 180 (368)
+|+|||+|++|+-+|..|.+ . .+|+++++.+... + ..
T Consensus 3 dV~IvGaGpaGl~~A~~La~--~-~~V~liE~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~~~~~~~~~~ 79 (351)
T PRK11445 3 DVAIIGLGPAGSALARLLAG--K-MKVIAIDKKHQCGTEGFSKPCGGLLAPDAQKSFAKDGLTLPKDVIANPQIFAVKTI 79 (351)
T ss_pred eEEEECCCHHHHHHHHHHhc--c-CCEEEEECCCccccccccCcCcCccCHHHHHHHHHcCCCCCcceeeccccceeeEe
Confidence 68999999999999999874 3 7899998765210 0 00
Q ss_pred --Cc--------h---h-HHHHHHH---HHcCCcEEEecceeeecccCCC--eEEc-CCCc--EEecCEEEEccCCCC
Q 017664 181 --GS--------R---A-SQIALDW---LTSKKVEVILNQSVTLNTISDG--LIET-SSGE--TIDTDCHFMCTGKAM 236 (368)
Q Consensus 181 --~~--------~---~-~~~~~~~---l~~~gv~i~~~~~v~~i~~~~~--~v~~-~~g~--~i~~d~vi~a~G~~p 236 (368)
.. . + ...+.+. ..+.|++++.++.+..++.+++ .+.+ .+|+ ++++|++|.|.|...
T Consensus 80 ~~~~~~~~~~~~~~~~i~R~~~~~~L~~~~~~gv~v~~~~~v~~i~~~~~~~~v~~~~~g~~~~i~a~~vV~AdG~~S 157 (351)
T PRK11445 80 DLANSLTRNYQRSYINIDRHKFDLWLKSLIPASVEVYHNSLCRKIWREDDGYHVIFRADGWEQHITARYLVGADGANS 157 (351)
T ss_pred cccccchhhcCCCcccccHHHHHHHHHHHHhcCCEEEcCCEEEEEEEcCCEEEEEEecCCcEEEEEeCEEEECCCCCc
Confidence 00 0 0 0011122 2346899999999988876555 4443 4664 689999999999763
No 414
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=96.78 E-value=0.0011 Score=65.80 Aligned_cols=51 Identities=16% Similarity=0.074 Sum_probs=38.6
Q ss_pred CCcEEeCCCeeecCCCCeEEecccCCCCc------cchHHHHHHHHHHHHHHHHHHHc
Q 017664 253 RGRLMVDENLRVRGFKNVFAIGDITDIPE------IKQGYLAQKHALVTAKNLKKLMM 304 (368)
Q Consensus 253 ~g~i~vd~~~~~~~~~~ifa~GD~~~~~~------~~~~~~a~~~g~~aa~~i~~~l~ 304 (368)
.|.+.+|...+| +.|++||+|+|++... -.....+.-.|+.|+++++..+.
T Consensus 370 ~gG~~~d~~~~t-~i~gL~a~Ge~~~~~hg~nrl~~~sl~~~~v~g~~Ag~~aa~~~~ 426 (603)
T TIGR01811 370 MGGLWVDYDQMT-NIPGLFAAGECDFSQHGANRLGANSLLSAIADGYFALPFTIPNYL 426 (603)
T ss_pred CCCeeECCCCcc-cCCCEEECcccccCcCCCccchhHHHHHHHHHHHHHHHHHHHHHh
Confidence 477999999998 7999999999975321 02335678888999998877653
No 415
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=96.75 E-value=0.013 Score=55.03 Aligned_cols=92 Identities=17% Similarity=0.280 Sum_probs=61.7
Q ss_pred eEEEEcCchhHHHHHHHHhhhCCCCeEEEEecC-ccc--------------c------------------cc-------c
Q 017664 141 SVLIVGGGPTGVELAGEIAVDFPDKKVILVHRG-PKL--------------L------------------EF-------V 180 (368)
Q Consensus 141 ~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~-~~~--------------l------------------~~-------~ 180 (368)
.|+|||+|++|+-+|..|++ .+.+|.++++. +.. + +. .
T Consensus 2 DVvIVGaGpAG~~aA~~La~--~G~~V~l~E~~~~~~~~cg~~i~~~~l~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (388)
T TIGR02023 2 DVAVIGGGPSGATAAETLAR--AGIETILLERALSNIKPCGGAIPPCLIEEFDIPDSLIDRRVTQMRMISPSRVPIKVTI 79 (388)
T ss_pred eEEEECCCHHHHHHHHHHHh--CCCcEEEEECCCCCcCcCcCCcCHhhhhhcCCchHHHhhhcceeEEEcCCCceeeecc
Confidence 58999999999999999985 47889999876 210 0 00 0
Q ss_pred C--c---------hhHHHHHHHHHcCCcEEEecceeeecccCCC--eEEcCC------C--cEEecCEEEEccCCC
Q 017664 181 G--S---------RASQIALDWLTSKKVEVILNQSVTLNTISDG--LIETSS------G--ETIDTDCHFMCTGKA 235 (368)
Q Consensus 181 ~--~---------~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~--~v~~~~------g--~~i~~d~vi~a~G~~ 235 (368)
+ . .+-+.+.+.+.+.|++++.+ .++.+..+++ .+.+.+ | .++.+|.||.|.|..
T Consensus 80 ~~~~~~~~~~~r~~fd~~L~~~a~~~G~~v~~~-~v~~v~~~~~~~~v~~~~~~~~~~~~~~~i~a~~VI~AdG~~ 154 (388)
T TIGR02023 80 PSEDGYVGMVRREVFDSYLRERAQKAGAELIHG-LFLKLERDRDGVTLTYRTPKKGAGGEKGSVEADVVIGADGAN 154 (388)
T ss_pred CCCCCceEeeeHHHHHHHHHHHHHhCCCEEEee-EEEEEEEcCCeEEEEEEeccccCCCcceEEEeCEEEECCCCC
Confidence 0 0 11123455567789999865 5777765555 444432 2 379999999999964
No 416
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=96.72 E-value=0.014 Score=55.75 Aligned_cols=49 Identities=18% Similarity=0.171 Sum_probs=38.4
Q ss_pred HHHHHHcC---CcEEEecceeeecccC--------CC-eEEcCCCcEEecCEEEEccCCCC
Q 017664 188 ALDWLTSK---KVEVILNQSVTLNTIS--------DG-LIETSSGETIDTDCHFMCTGKAM 236 (368)
Q Consensus 188 ~~~~l~~~---gv~i~~~~~v~~i~~~--------~~-~v~~~~g~~i~~d~vi~a~G~~p 236 (368)
+.+.+++. +++++.++++..++.+ ++ .+.+.+|+++.+|++|-|-|...
T Consensus 123 L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~~~v~v~~~~g~~i~a~llVgADG~~S 183 (437)
T TIGR01989 123 LYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNSNWVHITLSDGQVLYTKLLIGADGSNS 183 (437)
T ss_pred HHHHHHhCCCCCeEEecCCeeEEEEeccccccCCCCceEEEEcCCCEEEeeEEEEecCCCC
Confidence 44555665 4999999999988632 22 77888999999999999999764
No 417
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=96.71 E-value=0.0023 Score=56.75 Aligned_cols=36 Identities=22% Similarity=0.386 Sum_probs=32.3
Q ss_pred CCCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCc
Q 017664 14 VEKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEY 49 (368)
Q Consensus 14 ~~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~ 49 (368)
+...|++|||+|.|||.||..|+ +|.+|+|+|++..
T Consensus 3 ~~~~dvivvgaglaglvaa~elA~aG~~V~ildQEge 39 (552)
T COG3573 3 GLTADVIVVGAGLAGLVAAAELADAGKRVLILDQEGE 39 (552)
T ss_pred cccccEEEECccHHHHHHHHHHHhcCceEEEEccccc
Confidence 34689999999999999999998 6999999998864
No 418
>PRK06126 hypothetical protein; Provisional
Probab=96.63 E-value=0.014 Score=57.39 Aligned_cols=34 Identities=44% Similarity=0.679 Sum_probs=28.9
Q ss_pred CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCc
Q 017664 139 ANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGP 174 (368)
Q Consensus 139 ~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~ 174 (368)
..+|+|||+|+.|+-+|..|.+ .|.+|+++++.+
T Consensus 7 ~~~VlIVGaGpaGL~~Al~La~--~G~~v~viEr~~ 40 (545)
T PRK06126 7 ETPVLIVGGGPVGLALALDLGR--RGVDSILVERKD 40 (545)
T ss_pred cCCEEEECCCHHHHHHHHHHHH--CCCcEEEEeCCC
Confidence 4579999999999999999985 478888888664
No 419
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=96.60 E-value=0.002 Score=63.23 Aligned_cols=88 Identities=19% Similarity=0.135 Sum_probs=54.7
Q ss_pred HHHHHHHcCCcEEEecceeeecccCCC---eEEcCC-Cc---EEecCEEEEccCCCCCchhhhccccccc--cCCCC---
Q 017664 187 IALDWLTSKKVEVILNQSVTLNTISDG---LIETSS-GE---TIDTDCHFMCTGKAMASSWLRETILKDS--LDGRG--- 254 (368)
Q Consensus 187 ~~~~~l~~~gv~i~~~~~v~~i~~~~~---~v~~~~-g~---~i~~d~vi~a~G~~p~~~~~~~~~l~~~--~~~~g--- 254 (368)
.+....++.|++|++++.|.+|..+++ +|+..+ +. .+.++.||+|.|..-.+.++..++++-. +++-|
T Consensus 199 ~l~~a~~r~nl~i~~~~~V~rI~~~~~ra~GV~~~~~~~~~~~~~ak~VIlaAGai~SP~LLl~SGIG~~~~L~~~gI~~ 278 (532)
T TIGR01810 199 YLHPAMKRPNLEVQTRAFVTKINFEGNRATGVEFKKGGRKEHTEANKEVILSAGAINSPQLLQLSGIGDAEHLRELGIEP 278 (532)
T ss_pred HhhhhccCCCeEEEeCCEEEEEEecCCeEEEEEEEeCCcEEEEEEeeeEEEccCCCCCHHHHHhcCCCCHHHHHhcCCCe
Confidence 344444577899999999999987655 454432 22 3589999999998656667776665421 11111
Q ss_pred ---cEEeCCCeeecCCCCeEEeccc
Q 017664 255 ---RLMVDENLRVRGFKNVFAIGDI 276 (368)
Q Consensus 255 ---~i~vd~~~~~~~~~~ifa~GD~ 276 (368)
..-|-++||. ++.++..+-.
T Consensus 279 ~~~lp~VG~nL~D--H~~~~~~~~~ 301 (532)
T TIGR01810 279 RIHLPGVGENLQD--HLEVYVQHAC 301 (532)
T ss_pred EeeCCccccchhh--cccceeEEEe
Confidence 0114456665 5666665543
No 420
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=96.48 E-value=0.012 Score=55.97 Aligned_cols=93 Identities=18% Similarity=0.222 Sum_probs=61.0
Q ss_pred CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccc------------------------------------------c
Q 017664 140 NSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKL------------------------------------------L 177 (368)
Q Consensus 140 ~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~------------------------------------------l 177 (368)
-.|+|||+|..|+|.|...+ ..|.++.+++-+..- |
T Consensus 5 ~DVIVIGgGHAG~EAA~AaA--RmG~ktlLlT~~~dtig~msCNPaIGG~~KG~lvrEIDALGG~Mg~~~D~~~IQ~r~L 82 (621)
T COG0445 5 YDVIVIGGGHAGVEAALAAA--RMGAKTLLLTLNLDTIGEMSCNPAIGGPGKGHLVREIDALGGLMGKAADKAGIQFRML 82 (621)
T ss_pred CceEEECCCccchHHHHhhh--ccCCeEEEEEcCCCceeecccccccCCcccceeEEeehhccchHHHhhhhcCCchhhc
Confidence 46999999999999998877 467777777644210 0
Q ss_pred c------------ccCchh-HHHHHHHHH-cCCcEEEecceeeeccc-CCC---eEEcCCCcEEecCEEEEccCCC
Q 017664 178 E------------FVGSRA-SQIALDWLT-SKKVEVILNQSVTLNTI-SDG---LIETSSGETIDTDCHFMCTGKA 235 (368)
Q Consensus 178 ~------------~~~~~~-~~~~~~~l~-~~gv~i~~~~~v~~i~~-~~~---~v~~~~g~~i~~d~vi~a~G~~ 235 (368)
. ..|..+ ...+++.++ ..|+.++.+.. ..+.. ++. +|.+.+|..+.|+.||++||.-
T Consensus 83 N~sKGPAVra~RaQaDk~~Y~~~mk~~le~~~NL~l~q~~v-~dli~e~~~~v~GV~t~~G~~~~a~aVVlTTGTF 157 (621)
T COG0445 83 NSSKGPAVRAPRAQADKWLYRRAMKNELENQPNLHLLQGEV-EDLIVEEGQRVVGVVTADGPEFHAKAVVLTTGTF 157 (621)
T ss_pred cCCCcchhcchhhhhhHHHHHHHHHHHHhcCCCceehHhhh-HHHhhcCCCeEEEEEeCCCCeeecCEEEEeeccc
Confidence 0 011111 122344444 35788876654 33433 332 7899999999999999999963
No 421
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.48 E-value=0.024 Score=53.18 Aligned_cols=37 Identities=22% Similarity=0.389 Sum_probs=28.8
Q ss_pred CeEEEEcCchhHHHHHHHHhhhCCCC-eEEEEecCccc
Q 017664 140 NSVLIVGGGPTGVELAGEIAVDFPDK-KVILVHRGPKL 176 (368)
Q Consensus 140 ~~v~VvG~g~~~~e~a~~l~~~~~~~-~v~~i~~~~~~ 176 (368)
.+|+|||+|.+|+.+|..|.+..... .|.++++.+.+
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~ 39 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNF 39 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCCCCceEEecccccc
Confidence 47999999999999999998643333 38888877543
No 422
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=96.43 E-value=0.028 Score=52.82 Aligned_cols=95 Identities=15% Similarity=0.214 Sum_probs=64.7
Q ss_pred CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccc--------------------------------c---------
Q 017664 140 NSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLL--------------------------------E--------- 178 (368)
Q Consensus 140 ~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l--------------------------------~--------- 178 (368)
.+|+|||+|+.|+-+|..|.+ .|.+|+++++.+... +
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~--~G~~v~viE~~~~~~~~~~~~a~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~ 80 (390)
T TIGR02360 3 TQVAIIGAGPSGLLLGQLLHK--AGIDNVILERQSRDYVLGRIRAGVLEQGTVDLLREAGVDERMDREGLVHEGTEIAFD 80 (390)
T ss_pred ceEEEECccHHHHHHHHHHHH--CCCCEEEEECCCCcccCCceeEeeECHHHHHHHHHCCChHHHHhcCceecceEEeeC
Confidence 579999999999999999885 588899998765200 0
Q ss_pred ------ccC-------------chhHHHHHHHHHcCCcEEEecceeeeccc-CC-C-eEEcC-CCc--EEecCEEEEccC
Q 017664 179 ------FVG-------------SRASQIALDWLTSKKVEVILNQSVTLNTI-SD-G-LIETS-SGE--TIDTDCHFMCTG 233 (368)
Q Consensus 179 ------~~~-------------~~~~~~~~~~l~~~gv~i~~~~~v~~i~~-~~-~-~v~~~-~g~--~i~~d~vi~a~G 233 (368)
.++ +.+...+.+.+.+.|+.++.+..++.+.. ++ + .|.+. +|+ ++++|+||-|-|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~~v~~~~~~~~~~~V~~~~~g~~~~i~adlvIGADG 160 (390)
T TIGR02360 81 GQRFRIDLKALTGGKTVMVYGQTEVTRDLMEAREAAGLTTVYDADDVRLHDLAGDRPYVTFERDGERHRLDCDFIAGCDG 160 (390)
T ss_pred CEEEEEeccccCCCceEEEeCHHHHHHHHHHHHHhcCCeEEEeeeeEEEEecCCCccEEEEEECCeEEEEEeCEEEECCC
Confidence 000 01123344555667888888887665533 22 2 66664 675 689999999999
Q ss_pred CCC
Q 017664 234 KAM 236 (368)
Q Consensus 234 ~~p 236 (368)
...
T Consensus 161 ~~S 163 (390)
T TIGR02360 161 FHG 163 (390)
T ss_pred Cch
Confidence 764
No 423
>PRK07538 hypothetical protein; Provisional
Probab=96.42 E-value=0.022 Score=54.05 Aligned_cols=94 Identities=19% Similarity=0.209 Sum_probs=62.3
Q ss_pred eEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccc-----------------------------------cC----
Q 017664 141 SVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEF-----------------------------------VG---- 181 (368)
Q Consensus 141 ~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~-----------------------------------~~---- 181 (368)
+|+|||+|+.|+-+|..|.+ .+.+|+++++.+.+.+. .+
T Consensus 2 dV~IVGaG~aGl~~A~~L~~--~G~~v~v~E~~~~~~~~g~gi~l~p~~~~~L~~lgl~~~l~~~~~~~~~~~~~~~~g~ 79 (413)
T PRK07538 2 KVLIAGGGIGGLTLALTLHQ--RGIEVVVFEAAPELRPLGVGINLLPHAVRELAELGLLDALDAIGIRTRELAYFNRHGQ 79 (413)
T ss_pred eEEEECCCHHHHHHHHHHHh--CCCcEEEEEcCCcccccCcceeeCchHHHHHHHCCCHHHHHhhCCCCcceEEEcCCCC
Confidence 68999999999999999885 47889999876532000 00
Q ss_pred ----------------------chhHHHHHHHHHc-CC-cEEEecceeeecccCCC--eEEcCCC-----cEEecCEEEE
Q 017664 182 ----------------------SRASQIALDWLTS-KK-VEVILNQSVTLNTISDG--LIETSSG-----ETIDTDCHFM 230 (368)
Q Consensus 182 ----------------------~~~~~~~~~~l~~-~g-v~i~~~~~v~~i~~~~~--~v~~~~g-----~~i~~d~vi~ 230 (368)
..+.+.+.+.+.+ .| .+++.+++++.++.+++ .+.+.++ +++++|+||-
T Consensus 80 ~~~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~g~~~i~~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~~adlvIg 159 (413)
T PRK07538 80 RIWSEPRGLAAGYDWPQYSIHRGELQMLLLDAVRERLGPDAVRTGHRVVGFEQDADVTVVFLGDRAGGDLVSVRGDVLIG 159 (413)
T ss_pred EEeeccCCcccCCCCceEEEEHHHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEeccCCCccceEEeeEEEE
Confidence 0011223333333 35 46999999998876544 3333332 4899999999
Q ss_pred ccCCCC
Q 017664 231 CTGKAM 236 (368)
Q Consensus 231 a~G~~p 236 (368)
|-|...
T Consensus 160 ADG~~S 165 (413)
T PRK07538 160 ADGIHS 165 (413)
T ss_pred CCCCCH
Confidence 999653
No 424
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=96.39 E-value=0.0033 Score=56.78 Aligned_cols=101 Identities=17% Similarity=0.141 Sum_probs=62.2
Q ss_pred CCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeeccceeeeecccccccceeecccccCceeEEEe-EEEEeecc
Q 017664 16 KKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITWASLRAVVEPSFAVRSVINHGDYLSNVKIVVS-TAVSITDT 93 (368)
Q Consensus 16 ~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 93 (368)
+.+++|||||.-||-.+.--. .|.+||++|-.++++.. .++++......-.. .+++.|.-. ++...+++
T Consensus 211 Pk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~~~-------mD~Eisk~~qr~L~--kQgikF~l~tkv~~a~~~ 281 (506)
T KOG1335|consen 211 PKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGGV-------MDGEISKAFQRVLQ--KQGIKFKLGTKVTSATRN 281 (506)
T ss_pred cceEEEEcCceeeeehhhHHHhcCCeEEEEEehhhhccc-------cCHHHHHHHHHHHH--hcCceeEeccEEEEeecc
Confidence 578999999999999987554 59999999988877633 12221111000000 124555332 33333321
Q ss_pred -----EEEec-----CCeEEEecEEEEecCCCCCCCCchHHH
Q 017664 94 -----EVVTA-----GGQTFVYDYVVVATGHVESVPKSRTER 125 (368)
Q Consensus 94 -----~v~~~-----~g~~~~~d~lvlAtG~~~~~p~~~~~~ 125 (368)
.+... ...++++|.+.+++|.+|...++..+.
T Consensus 282 ~dg~v~i~ve~ak~~k~~tle~DvlLVsiGRrP~t~GLgle~ 323 (506)
T KOG1335|consen 282 GDGPVEIEVENAKTGKKETLECDVLLVSIGRRPFTEGLGLEK 323 (506)
T ss_pred CCCceEEEEEecCCCceeEEEeeEEEEEccCcccccCCChhh
Confidence 22222 235789999999999999988865443
No 425
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=96.39 E-value=0.035 Score=52.30 Aligned_cols=38 Identities=18% Similarity=0.101 Sum_probs=30.2
Q ss_pred CCeEEecccCCCCccch---HHHHHHHHHHHHHHHHHHHcC
Q 017664 268 KNVFAIGDITDIPEIKQ---GYLAQKHALVTAKNLKKLMMG 305 (368)
Q Consensus 268 ~~ifa~GD~~~~~~~~~---~~~a~~~g~~aa~~i~~~l~g 305 (368)
++++.+||+++.-.|-+ ...|+..|+.||+.+.+.+..
T Consensus 270 ~~~llvGDAAg~v~P~tGeGI~~A~~sg~~aa~~i~~~~~~ 310 (398)
T TIGR02028 270 GRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVEESRL 310 (398)
T ss_pred CCEEEEEcCCCCCCcccccchHHHHHHHHHHHHHHHHHHhc
Confidence 68889999998765533 368999999999999877643
No 426
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=96.32 E-value=0.03 Score=51.53 Aligned_cols=98 Identities=14% Similarity=0.101 Sum_probs=68.3
Q ss_pred cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccc--ccc---------CchhHHHHHHHHHcC--CcEEEecce
Q 017664 138 SANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLL--EFV---------GSRASQIALDWLTSK--KVEVILNQS 204 (368)
Q Consensus 138 ~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l--~~~---------~~~~~~~~~~~l~~~--gv~i~~~~~ 204 (368)
+.++|+|+|+|=.|+.++..|. ....+|+++.+++.++ |.. -..+.+.+....+.. +++++.. .
T Consensus 54 kKk~vVVLGsGW~a~S~lk~ld--ts~YdV~vVSPRnyFlFTPLLpS~~vGTve~rSIvEPIr~i~r~k~~~~~y~eA-e 130 (491)
T KOG2495|consen 54 KKKRVVVLGSGWGAISLLKKLD--TSLYDVTVVSPRNYFLFTPLLPSTTVGTVELRSIVEPIRAIARKKNGEVKYLEA-E 130 (491)
T ss_pred CCceEEEEcCchHHHHHHHhcc--ccccceEEeccccceEEeeccCCccccceeehhhhhhHHHHhhccCCCceEEec-c
Confidence 4789999999999998888876 3567899999988754 222 235566666666655 5566543 3
Q ss_pred eeecccCCCe----EEcCCC----cEEecCEEEEccCCCCCc
Q 017664 205 VTLNTISDGL----IETSSG----ETIDTDCHFMCTGKAMAS 238 (368)
Q Consensus 205 v~~i~~~~~~----v~~~~g----~~i~~d~vi~a~G~~p~~ 238 (368)
-..+..+++. ..++++ -.+.+|++|+|+|..+++
T Consensus 131 c~~iDp~~k~V~~~s~t~~~~~~e~~i~YDyLViA~GA~~~T 172 (491)
T KOG2495|consen 131 CTKIDPDNKKVHCRSLTADSSDKEFVIGYDYLVIAVGAEPNT 172 (491)
T ss_pred cEeecccccEEEEeeeccCCCcceeeecccEEEEeccCCCCC
Confidence 4456666552 234444 368899999999988775
No 427
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=96.29 E-value=0.022 Score=49.32 Aligned_cols=98 Identities=19% Similarity=0.253 Sum_probs=63.4
Q ss_pred eEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccc--------------------cCchhHHH-------------
Q 017664 141 SVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEF--------------------VGSRASQI------------- 187 (368)
Q Consensus 141 ~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~--------------------~~~~~~~~------------- 187 (368)
+|+|||+|..|+-+|..|+. .+.+|++++++..+... -++.+.+.
T Consensus 3 siaIVGaGiAGl~aA~~L~~--aG~~vtV~eKg~GvGGRlAtRRl~~g~~DhGAqYfk~~~~~F~~~Ve~~~~~glV~~W 80 (331)
T COG3380 3 SIAIVGAGIAGLAAAYALRE--AGREVTVFEKGRGVGGRLATRRLDGGRFDHGAQYFKPRDELFLRAVEALRDDGLVDVW 80 (331)
T ss_pred cEEEEccchHHHHHHHHHHh--cCcEEEEEEcCCCcccchheeccCCccccccceeecCCchHHHHHHHHHHhCCceeec
Confidence 68999999999999999985 58899999987422100 01111111
Q ss_pred -----------------------------HHHHHHcCCcEEEecceeeecccCCC--eEEcCCC-cEEecCEEEEccCCC
Q 017664 188 -----------------------------ALDWLTSKKVEVILNQSVTLNTISDG--LIETSSG-ETIDTDCHFMCTGKA 235 (368)
Q Consensus 188 -----------------------------~~~~l~~~gv~i~~~~~v~~i~~~~~--~v~~~~g-~~i~~d~vi~a~G~~ 235 (368)
+.+.| .-..++.++++|+++...++ ++.+++| +...+|.|+++..-.
T Consensus 81 ~~~~~~~~~~~~~~~~d~~pyvg~pgmsalak~L-AtdL~V~~~~rVt~v~~~~~~W~l~~~~g~~~~~~d~vvla~PAP 159 (331)
T COG3380 81 TPAVWTFTGDGSPPRGDEDPYVGEPGMSALAKFL-ATDLTVVLETRVTEVARTDNDWTLHTDDGTRHTQFDDVVLAIPAP 159 (331)
T ss_pred cccccccccCCCCCCCCCCccccCcchHHHHHHH-hccchhhhhhhhhhheecCCeeEEEecCCCcccccceEEEecCCC
Confidence 11111 22456677888887766555 7888665 578899999997543
Q ss_pred CCchhh
Q 017664 236 MASSWL 241 (368)
Q Consensus 236 p~~~~~ 241 (368)
-...++
T Consensus 160 Q~~~LL 165 (331)
T COG3380 160 QTATLL 165 (331)
T ss_pred cchhhc
Confidence 333444
No 428
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=96.23 E-value=0.016 Score=54.16 Aligned_cols=73 Identities=27% Similarity=0.317 Sum_probs=55.7
Q ss_pred CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccc-------cCch------hHHHHHHHHHcCCcEEEeccee
Q 017664 139 ANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEF-------VGSR------ASQIALDWLTSKKVEVILNQSV 205 (368)
Q Consensus 139 ~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~-------~~~~------~~~~~~~~l~~~gv~i~~~~~v 205 (368)
.++++|||||.+|++.|.+|++ .|.+|+++++.+.+... ++.. +...+.+.-...+|++++.++|
T Consensus 124 ~~svLVIGGGvAGitAAl~La~--~G~~v~LVEKepsiGGrmak~~k~FP~~dcs~C~LaP~m~~v~~hp~i~l~TyaeV 201 (622)
T COG1148 124 SKSVLVIGGGVAGITAALELAD--MGFKVYLVEKEPSIGGRMAKLNKTFPTNDCSICILAPKMVEVSNHPNIELITYAEV 201 (622)
T ss_pred ccceEEEcCcHHHHHHHHHHHH--cCCeEEEEecCCcccccHHhhhccCCCcccchhhccchhhhhccCCceeeeeeeee
Confidence 6899999999999999999996 59999999998865432 1111 2233444455678999999999
Q ss_pred eecccCCC
Q 017664 206 TLNTISDG 213 (368)
Q Consensus 206 ~~i~~~~~ 213 (368)
++++..-+
T Consensus 202 ~ev~G~vG 209 (622)
T COG1148 202 EEVSGSVG 209 (622)
T ss_pred eeeccccc
Confidence 98877655
No 429
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=96.22 E-value=0.016 Score=52.95 Aligned_cols=33 Identities=30% Similarity=0.346 Sum_probs=29.4
Q ss_pred CcEEEECCChHHHHHHHHhhc-CCcEEEEcCCCc
Q 017664 17 KKVVVIGGGVGGSLLAYHIQS-FADVVLIDEKEY 49 (368)
Q Consensus 17 ~~vvIIGaG~aGl~aA~~L~~-g~~v~lie~~~~ 49 (368)
++|.|||.|+.||+.|.-|+. |++|+.+|..+.
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~ 34 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDES 34 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcCCeEEEEeCCHH
Confidence 479999999999999998884 999999998753
No 430
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=96.20 E-value=0.0013 Score=54.38 Aligned_cols=35 Identities=29% Similarity=0.399 Sum_probs=30.2
Q ss_pred CCcEEEECCChHHHHHHHHhh---cCCcEEEEcCCCce
Q 017664 16 KKKVVVIGGGVGGSLLAYHIQ---SFADVVLIDEKEYF 50 (368)
Q Consensus 16 ~~~vvIIGaG~aGl~aA~~L~---~g~~v~lie~~~~~ 50 (368)
..||+|||+|.+||+||+.+. ++.+|.+||..-..
T Consensus 76 esDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaP 113 (328)
T KOG2960|consen 76 ESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAP 113 (328)
T ss_pred ccceEEECCCccccceeeeeeccCCCceEEEEEeeecC
Confidence 469999999999999999886 38999999987543
No 431
>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]
Probab=96.16 E-value=0.0066 Score=55.43 Aligned_cols=36 Identities=36% Similarity=0.428 Sum_probs=30.9
Q ss_pred CCCCCCcEEEECCChHHHHHHHHhhc-----CCcEEEEcCC
Q 017664 12 GLVEKKKVVVIGGGVGGSLLAYHIQS-----FADVVLIDEK 47 (368)
Q Consensus 12 ~~~~~~~vvIIGaG~aGl~aA~~L~~-----g~~v~lie~~ 47 (368)
...+.+||||+||||.|++.|..|.. ..+|+|+|-.
T Consensus 32 ~~~~~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~ 72 (481)
T KOG3855|consen 32 TDTAKYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAG 72 (481)
T ss_pred CCcccCCEEEECCchHHHHHHHHhccCCccchheeeEEecc
Confidence 34458999999999999999999972 6799999988
No 432
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.13 E-value=0.016 Score=51.83 Aligned_cols=98 Identities=22% Similarity=0.271 Sum_probs=70.1
Q ss_pred cCCeEEEEcCchhHHHHHHHHhhhC---------CCCeEE--E-EecCcccccccCchhHHHHHHHHHcCCcEEEeccee
Q 017664 138 SANSVLIVGGGPTGVELAGEIAVDF---------PDKKVI--L-VHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSV 205 (368)
Q Consensus 138 ~~~~v~VvG~g~~~~e~a~~l~~~~---------~~~~v~--~-i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v 205 (368)
.+-.|+|||+|+.|...|.+.+++- .+.+|. + |+.--.......+.+...++++.++..|++....+.
T Consensus 210 ~~yDVLvVGgGPAgaaAAiYaARKGiRTGl~aerfGGQvldT~~IENfIsv~~teGpkl~~ale~Hv~~Y~vDimn~qra 289 (520)
T COG3634 210 DAYDVLVVGGGPAGAAAAIYAARKGIRTGLVAERFGGQVLDTMGIENFISVPETEGPKLAAALEAHVKQYDVDVMNLQRA 289 (520)
T ss_pred CCceEEEEcCCcchhHHHHHHHhhcchhhhhhhhhCCeeccccchhheeccccccchHHHHHHHHHHhhcCchhhhhhhh
Confidence 3568999999999998887766421 111210 0 110001112356788999999999999999988887
Q ss_pred eecccC---CC--eEEcCCCcEEecCEEEEccCCC
Q 017664 206 TLNTIS---DG--LIETSSGETIDTDCHFMCTGKA 235 (368)
Q Consensus 206 ~~i~~~---~~--~v~~~~g~~i~~d~vi~a~G~~ 235 (368)
.+++.. ++ .+++++|-.+++..+|++||.+
T Consensus 290 ~~l~~a~~~~~l~ev~l~nGavLkaktvIlstGAr 324 (520)
T COG3634 290 SKLEPAAVEGGLIEVELANGAVLKARTVILATGAR 324 (520)
T ss_pred hcceecCCCCccEEEEecCCceeccceEEEecCcc
Confidence 777664 22 8999999999999999999965
No 433
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=96.10 E-value=0.026 Score=57.88 Aligned_cols=35 Identities=29% Similarity=0.516 Sum_probs=30.2
Q ss_pred eEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcc
Q 017664 141 SVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPK 175 (368)
Q Consensus 141 ~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~ 175 (368)
+|+|||+|+.|+-+|..|.+..++.+|+++++.+.
T Consensus 2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~ 36 (765)
T PRK08255 2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRP 36 (765)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCC
Confidence 69999999999999999886445889999998764
No 434
>PRK08401 L-aspartate oxidase; Provisional
Probab=96.05 E-value=0.066 Score=51.61 Aligned_cols=32 Identities=34% Similarity=0.426 Sum_probs=25.3
Q ss_pred CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecC
Q 017664 140 NSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRG 173 (368)
Q Consensus 140 ~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~ 173 (368)
..|+|||+|.+|+-+|..+.+ .+.+|.++++.
T Consensus 2 ~DVvVVGaG~AGl~AAi~aae--~G~~V~liek~ 33 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAK--KGFDVTIIGPG 33 (466)
T ss_pred CeEEEECccHHHHHHHHHHHH--CCCeEEEEeCC
Confidence 468999999999988888875 46788887763
No 435
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=96.03 E-value=0.052 Score=51.47 Aligned_cols=33 Identities=42% Similarity=0.760 Sum_probs=27.1
Q ss_pred eEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcc
Q 017664 141 SVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPK 175 (368)
Q Consensus 141 ~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~ 175 (368)
.|+|||+|.+|+-.|..+++ .+.+|.++++.+.
T Consensus 1 DVvVIG~G~AGl~AA~~Aae--~G~~V~lvek~~~ 33 (417)
T PF00890_consen 1 DVVVIGGGLAGLAAAIEAAE--AGAKVLLVEKGPR 33 (417)
T ss_dssp SEEEE-SSHHHHHHHHHHHH--TTT-EEEEESSSG
T ss_pred CEEEECCCHHHHHHHHHHhh--hcCeEEEEEeecc
Confidence 38999999999999999986 5889999998765
No 436
>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]
Probab=96.01 E-value=0.0077 Score=58.31 Aligned_cols=38 Identities=26% Similarity=0.397 Sum_probs=33.9
Q ss_pred CCCCCcEEEECCChHHHHHHHHhhc--CCcEEEEcCCCce
Q 017664 13 LVEKKKVVVIGGGVGGSLLAYHIQS--FADVVLIDEKEYF 50 (368)
Q Consensus 13 ~~~~~~vvIIGaG~aGl~aA~~L~~--g~~v~lie~~~~~ 50 (368)
....+|.||||||-||...|.+|.. ..+|+|+|++...
T Consensus 54 ~~~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~ 93 (623)
T KOG1238|consen 54 LDSSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDP 93 (623)
T ss_pred cccCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCC
Confidence 4568999999999999999999985 6999999998764
No 437
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=95.93 E-value=0.0078 Score=56.73 Aligned_cols=46 Identities=35% Similarity=0.598 Sum_probs=33.3
Q ss_pred CCCCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeecccee
Q 017664 13 LVEKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITWASLR 58 (368)
Q Consensus 13 ~~~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~~~~~ 58 (368)
|.+.+||||+|.|..-.-.|..|. .|.+|+-+|+++++|..|..+.
T Consensus 1 m~~~yDviI~GTGl~esila~als~~GkkVLhiD~n~yYGg~~asl~ 47 (438)
T PF00996_consen 1 MDEEYDVIILGTGLTESILAAALSRSGKKVLHIDRNDYYGGEWASLN 47 (438)
T ss_dssp --SBESEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSSCGGG-EE-
T ss_pred CCccceEEEECCCcHHHHHHHHHHhcCCEEEecCCCCCcCCchhccc
Confidence 567899999999999988888887 5999999999999998876654
No 438
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.89 E-value=0.049 Score=52.27 Aligned_cols=83 Identities=24% Similarity=0.259 Sum_probs=59.5
Q ss_pred cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHcCCcEEEecceeeecccCCCeEEc
Q 017664 138 SANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVTLNTISDGLIET 217 (368)
Q Consensus 138 ~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~v~~ 217 (368)
.+++++|+|+|.+|..+|..|.+ .|.+|+++++... +......+.+++.|++++.+.....
T Consensus 4 ~~k~v~iiG~g~~G~~~A~~l~~--~G~~V~~~d~~~~-------~~~~~~~~~l~~~~~~~~~~~~~~~---------- 64 (450)
T PRK14106 4 KGKKVLVVGAGVSGLALAKFLKK--LGAKVILTDEKEE-------DQLKEALEELGELGIELVLGEYPEE---------- 64 (450)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH--CCCEEEEEeCCch-------HHHHHHHHHHHhcCCEEEeCCcchh----------
Confidence 46899999999999999999985 5899999987642 1123334556777888776554320
Q ss_pred CCCcEEecCEEEEccCCCCCchhhh
Q 017664 218 SSGETIDTDCHFMCTGKAMASSWLR 242 (368)
Q Consensus 218 ~~g~~i~~d~vi~a~G~~p~~~~~~ 242 (368)
..-.+|.||.++|..++.+.+.
T Consensus 65 ---~~~~~d~vv~~~g~~~~~~~~~ 86 (450)
T PRK14106 65 ---FLEGVDLVVVSPGVPLDSPPVV 86 (450)
T ss_pred ---HhhcCCEEEECCCCCCCCHHHH
Confidence 1124899999999888776544
No 439
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=95.79 E-value=0.11 Score=49.79 Aligned_cols=34 Identities=29% Similarity=0.469 Sum_probs=28.3
Q ss_pred CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCc
Q 017664 139 ANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGP 174 (368)
Q Consensus 139 ~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~ 174 (368)
.-.|+|||+|+.|.-+|..+++ .|.+|.++++..
T Consensus 39 ~~DViIVGaGPAG~~aA~~LA~--~G~~VlllEr~~ 72 (450)
T PLN00093 39 KLRVAVIGGGPAGACAAETLAK--GGIETFLIERKL 72 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHh--CCCcEEEEecCC
Confidence 3479999999999999998885 578898988763
No 440
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=95.69 E-value=0.094 Score=52.35 Aligned_cols=36 Identities=25% Similarity=0.368 Sum_probs=31.2
Q ss_pred hcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCc
Q 017664 137 KSANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGP 174 (368)
Q Consensus 137 ~~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~ 174 (368)
....+|+|||||..|+-+|..|.+ .+.+|+++++.+
T Consensus 79 ~~~~~VlIVGgGIaGLalAlaL~r--~Gi~V~V~Er~~ 114 (668)
T PLN02927 79 KKKSRVLVAGGGIGGLVFALAAKK--KGFDVLVFEKDL 114 (668)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHh--cCCeEEEEeccc
Confidence 346789999999999999999985 588999999864
No 441
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=95.59 E-value=0.099 Score=52.38 Aligned_cols=35 Identities=46% Similarity=0.820 Sum_probs=29.3
Q ss_pred CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCc
Q 017664 139 ANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGP 174 (368)
Q Consensus 139 ~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~ 174 (368)
..+|+|||+|++|+-+|..|++ +.+.+|.++++.+
T Consensus 32 ~~dVlIVGAGPaGL~lA~~Lar-~~Gi~v~IiE~~~ 66 (634)
T PRK08294 32 EVDVLIVGCGPAGLTLAAQLSA-FPDITTRIVERKP 66 (634)
T ss_pred CCCEEEECCCHHHHHHHHHHhc-CCCCcEEEEEcCC
Confidence 4579999999999999999984 2478899988764
No 442
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=95.59 E-value=0.0061 Score=53.04 Aligned_cols=45 Identities=27% Similarity=0.387 Sum_probs=36.8
Q ss_pred CcCCCCCCcEEEECCChHHHHHHHHhhc-------CCcEEEEcCCCceeeec
Q 017664 10 AAGLVEKKKVVVIGGGVGGSLLAYHIQS-------FADVVLIDEKEYFEITW 54 (368)
Q Consensus 10 ~~~~~~~~~vvIIGaG~aGl~aA~~L~~-------g~~v~lie~~~~~~~~~ 54 (368)
++++.+.++|+|||||.-|.++|++|.+ ...|+|||+...-+...
T Consensus 4 T~r~~nsk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~gaS 55 (380)
T KOG2852|consen 4 TSREGNSKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAGGAS 55 (380)
T ss_pred ccccCCceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeecccccccc
Confidence 4566677999999999999999999973 37899999988765443
No 443
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=95.54 E-value=0.078 Score=48.18 Aligned_cols=90 Identities=18% Similarity=0.135 Sum_probs=63.5
Q ss_pred CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccc--------cc--cCchhHHHHHHHHHcCCcEEEeccee-ee
Q 017664 139 ANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLL--------EF--VGSRASQIALDWLTSKKVEVILNQSV-TL 207 (368)
Q Consensus 139 ~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l--------~~--~~~~~~~~~~~~l~~~gv~i~~~~~v-~~ 207 (368)
..+|.|||+|++|+-.|..|.++.++..|+++++.+.+. |. .-+-..+.+.+.++.....+.-|..| +.
T Consensus 20 ~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFGLvRyGVAPDHpEvKnvintFt~~aE~~rfsf~gNv~vG~d 99 (468)
T KOG1800|consen 20 TPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTAEHERFSFFGNVKVGRD 99 (468)
T ss_pred CceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcccceeeeccCCCCcchhhHHHHHHHHhhccceEEEecceeccc
Confidence 459999999999999999998766789999999887542 21 12234456777888888888877665 21
Q ss_pred cccCCCeEEcCCCcEEecCEEEEccCCCC
Q 017664 208 NTISDGLIETSSGETIDTDCHFMCTGKAM 236 (368)
Q Consensus 208 i~~~~~~v~~~~g~~i~~d~vi~a~G~~p 236 (368)
+. +.+ -+-.+|.|++|.|..-
T Consensus 100 vs-------l~e-L~~~ydavvLaYGa~~ 120 (468)
T KOG1800|consen 100 VS-------LKE-LTDNYDAVVLAYGADG 120 (468)
T ss_pred cc-------HHH-HhhcccEEEEEecCCC
Confidence 11 111 1345899999988653
No 444
>PLN02985 squalene monooxygenase
Probab=95.53 E-value=0.16 Score=49.59 Aligned_cols=33 Identities=36% Similarity=0.560 Sum_probs=28.1
Q ss_pred CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecC
Q 017664 139 ANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRG 173 (368)
Q Consensus 139 ~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~ 173 (368)
..+|+|||+|..|+-+|..|.+ .+.+|+++++.
T Consensus 43 ~~DViIVGAG~aGlalA~aLa~--~G~~V~vlEr~ 75 (514)
T PLN02985 43 ATDVIIVGAGVGGSALAYALAK--DGRRVHVIERD 75 (514)
T ss_pred CceEEEECCCHHHHHHHHHHHH--cCCeEEEEECc
Confidence 4579999999999999999885 47888888875
No 445
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=95.49 E-value=0.1 Score=50.87 Aligned_cols=33 Identities=27% Similarity=0.492 Sum_probs=29.2
Q ss_pred CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCc
Q 017664 140 NSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGP 174 (368)
Q Consensus 140 ~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~ 174 (368)
-.|+|||||.+|+-+|.+++. .+.+|.++++++
T Consensus 7 ~DVvIIGGGi~G~~~A~~la~--rGl~V~LvEk~d 39 (508)
T PRK12266 7 YDLLVIGGGINGAGIARDAAG--RGLSVLLCEQDD 39 (508)
T ss_pred CCEEEECcCHHHHHHHHHHHH--CCCeEEEEecCC
Confidence 469999999999999999995 488999999864
No 446
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=95.44 E-value=0.12 Score=50.43 Aligned_cols=33 Identities=27% Similarity=0.515 Sum_probs=29.3
Q ss_pred CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCc
Q 017664 140 NSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGP 174 (368)
Q Consensus 140 ~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~ 174 (368)
-.|+|||||.+|+-+|.++++ .+.+|.++++.+
T Consensus 7 ~DVvIIGGGi~G~~~A~~la~--rG~~V~LlEk~d 39 (502)
T PRK13369 7 YDLFVIGGGINGAGIARDAAG--RGLKVLLCEKDD 39 (502)
T ss_pred cCEEEECCCHHHHHHHHHHHh--CCCcEEEEECCC
Confidence 469999999999999999996 478999999874
No 447
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=95.43 E-value=0.055 Score=50.57 Aligned_cols=31 Identities=29% Similarity=0.542 Sum_probs=24.4
Q ss_pred CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEec
Q 017664 140 NSVLIVGGGPTGVELAGEIAVDFPDKKVILVHR 172 (368)
Q Consensus 140 ~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~ 172 (368)
-.|+|||||..|+|.|...++ .|.+.++++.
T Consensus 29 ~dVvVIGgGHAG~EAAaAaaR--~Ga~TlLlT~ 59 (679)
T KOG2311|consen 29 YDVVVIGGGHAGCEAAAAAAR--LGARTLLLTH 59 (679)
T ss_pred ccEEEECCCccchHHHHHHHh--cCCceEEeec
Confidence 479999999999999988773 5666666654
No 448
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=95.30 E-value=0.029 Score=55.85 Aligned_cols=34 Identities=21% Similarity=0.535 Sum_probs=30.8
Q ss_pred CCcEEEECCChHHHHHHHHhhc---CCcEEEEcCCCc
Q 017664 16 KKKVVVIGGGVGGSLLAYHIQS---FADVVLIDEKEY 49 (368)
Q Consensus 16 ~~~vvIIGaG~aGl~aA~~L~~---g~~v~lie~~~~ 49 (368)
.+||||||||.|||+||..+++ |.+|+||||.+.
T Consensus 11 ~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~ 47 (608)
T PRK06854 11 DTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANI 47 (608)
T ss_pred EeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCc
Confidence 5799999999999999999874 899999999864
No 449
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.18 E-value=0.026 Score=54.69 Aligned_cols=34 Identities=32% Similarity=0.361 Sum_probs=30.1
Q ss_pred CCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCC
Q 017664 15 EKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKE 48 (368)
Q Consensus 15 ~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~ 48 (368)
+..+++|||+|++|+++|..|+ +|.+|+++|+.+
T Consensus 15 ~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~ 49 (480)
T PRK01438 15 QGLRVVVAGLGVSGFAAADALLELGARVTVVDDGD 49 (480)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 3568999999999999999987 599999999775
No 450
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=95.17 E-value=0.022 Score=42.40 Aligned_cols=34 Identities=29% Similarity=0.346 Sum_probs=29.4
Q ss_pred CCCcEEEECCChHHHHHHHHhhc-CCcEEEEcCCC
Q 017664 15 EKKKVVVIGGGVGGSLLAYHIQS-FADVVLIDEKE 48 (368)
Q Consensus 15 ~~~~vvIIGaG~aGl~aA~~L~~-g~~v~lie~~~ 48 (368)
+..+++|||||..|..-+..|.+ |.+|+|+.+..
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~ 40 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI 40 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch
Confidence 56789999999999999988874 99999999874
No 451
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=95.17 E-value=0.045 Score=37.23 Aligned_cols=32 Identities=25% Similarity=0.379 Sum_probs=27.4
Q ss_pred EEcCchhHHHHHHHHhhhCCCCeEEEEecCcccc
Q 017664 144 IVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLL 177 (368)
Q Consensus 144 VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l 177 (368)
|||+|.+|+-+|..|.++ +.+|+++++.+++.
T Consensus 1 IiGaG~sGl~aA~~L~~~--g~~v~v~E~~~~~G 32 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKA--GYRVTVFEKNDRLG 32 (68)
T ss_dssp EES-SHHHHHHHHHHHHT--TSEEEEEESSSSSS
T ss_pred CEeeCHHHHHHHHHHHHC--CCcEEEEecCcccC
Confidence 799999999999999974 88999999988653
No 452
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=95.16 E-value=0.18 Score=48.97 Aligned_cols=52 Identities=17% Similarity=0.132 Sum_probs=36.5
Q ss_pred hHHHHHHHHHc-CCcEEEecceeeecccCCC---eEEcCC-C--cEEecCEEEEccCCC
Q 017664 184 ASQIALDWLTS-KKVEVILNQSVTLNTISDG---LIETSS-G--ETIDTDCHFMCTGKA 235 (368)
Q Consensus 184 ~~~~~~~~l~~-~gv~i~~~~~v~~i~~~~~---~v~~~~-g--~~i~~d~vi~a~G~~ 235 (368)
+...+.+.+++ .||++++++.+.++..+++ .+...+ + ..+.++.||+|||-.
T Consensus 130 l~~~L~~~~~~~~gi~i~~~~~v~~l~~~~g~v~Gv~~~~~~~~~~i~A~~VVlAtGG~ 188 (488)
T TIGR00551 130 VITTLVKKALNHPNIRIIEGENALDLLIETGRVVGVWVWNRETVETCHADAVVLATGGA 188 (488)
T ss_pred HHHHHHHHHHhcCCcEEEECeEeeeeeccCCEEEEEEEEECCcEEEEEcCEEEECCCcc
Confidence 34445566666 6899999999998876555 233322 2 368999999999964
No 453
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=95.15 E-value=0.094 Score=44.40 Aligned_cols=79 Identities=10% Similarity=0.037 Sum_probs=53.0
Q ss_pred cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHcCCcEEEecceeeecccCCCeEEc
Q 017664 138 SANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVTLNTISDGLIET 217 (368)
Q Consensus 138 ~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~v~~ 217 (368)
.+++++|||||.+|..-+..|.+ .+.+|+++.+... ..+.+..++.+++++.+..-
T Consensus 8 ~gk~vlVvGgG~va~rk~~~Ll~--~ga~VtVvsp~~~----------~~l~~l~~~~~i~~~~~~~~------------ 63 (205)
T TIGR01470 8 EGRAVLVVGGGDVALRKARLLLK--AGAQLRVIAEELE----------SELTLLAEQGGITWLARCFD------------ 63 (205)
T ss_pred CCCeEEEECcCHHHHHHHHHHHH--CCCEEEEEcCCCC----------HHHHHHHHcCCEEEEeCCCC------------
Confidence 47899999999999999988885 5789999875422 33444445556766544321
Q ss_pred CCCcEEecCEEEEccCCC-CCchhh
Q 017664 218 SSGETIDTDCHFMCTGKA-MASSWL 241 (368)
Q Consensus 218 ~~g~~i~~d~vi~a~G~~-p~~~~~ 241 (368)
.+..-.+++||.|||-. .|....
T Consensus 64 -~~dl~~~~lVi~at~d~~ln~~i~ 87 (205)
T TIGR01470 64 -ADILEGAFLVIAATDDEELNRRVA 87 (205)
T ss_pred -HHHhCCcEEEEECCCCHHHHHHHH
Confidence 11122489999999976 444333
No 454
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=95.10 E-value=0.25 Score=49.01 Aligned_cols=48 Identities=25% Similarity=0.205 Sum_probs=31.7
Q ss_pred HHHHHHc-CCcEEEecceeeecccCCC---eE---EcCCCc--EEecCEEEEccCCC
Q 017664 188 ALDWLTS-KKVEVILNQSVTLNTISDG---LI---ETSSGE--TIDTDCHFMCTGKA 235 (368)
Q Consensus 188 ~~~~l~~-~gv~i~~~~~v~~i~~~~~---~v---~~~~g~--~i~~d~vi~a~G~~ 235 (368)
+.+.+++ .+|+++.++.+..+..+++ ++ ...+|+ .+.++.||+|||-.
T Consensus 138 L~~~~~~~~~i~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~ 194 (580)
T TIGR01176 138 LFQTSLTYPQIMRYDEWFVTDLLVDDGRVCGLVAIEMAEGRLVTILADAVVLATGGA 194 (580)
T ss_pred HHHHHHhcCCCEEEeCeEEEEEEeeCCEEEEEEEEEcCCCcEEEEecCEEEEcCCCC
Confidence 3344433 4788888888877766555 22 234663 68899999999853
No 455
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=95.08 E-value=0.026 Score=48.54 Aligned_cols=33 Identities=36% Similarity=0.519 Sum_probs=29.9
Q ss_pred CcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCc
Q 017664 17 KKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEY 49 (368)
Q Consensus 17 ~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~ 49 (368)
++++|||+|..|.+.|..|. .|++|+++|+++.
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~ 34 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEE 34 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHH
Confidence 47999999999999999998 5999999999864
No 456
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=95.03 E-value=0.011 Score=55.84 Aligned_cols=35 Identities=23% Similarity=0.420 Sum_probs=31.7
Q ss_pred CCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCc
Q 017664 15 EKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEY 49 (368)
Q Consensus 15 ~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~ 49 (368)
.++||+|||||..|--||.-.. +|.++.|+|+++.
T Consensus 66 ~~fDVLIIGGGAtGaGcALDA~TRGLktaLVE~~DF 101 (680)
T KOG0042|consen 66 HEFDVLIIGGGATGAGCALDAATRGLKTALVEAGDF 101 (680)
T ss_pred CcccEEEECCCccCcceeehhhcccceeEEEecccc
Confidence 3589999999999999998776 8999999999986
No 457
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=95.00 E-value=0.031 Score=45.21 Aligned_cols=31 Identities=35% Similarity=0.441 Sum_probs=28.6
Q ss_pred cEEEECCChHHHHHHHHhh-cCCcEEEEcCCC
Q 017664 18 KVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKE 48 (368)
Q Consensus 18 ~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~ 48 (368)
+|.|||||..|.++|..|. +|++|+|..+++
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence 5899999999999999997 699999999986
No 458
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=94.90 E-value=0.041 Score=46.60 Aligned_cols=34 Identities=29% Similarity=0.302 Sum_probs=29.9
Q ss_pred CCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCC
Q 017664 15 EKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKE 48 (368)
Q Consensus 15 ~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~ 48 (368)
+..+++|||||..|..-+..|. .|.+|+|++++.
T Consensus 8 ~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~ 42 (205)
T TIGR01470 8 EGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEEL 42 (205)
T ss_pred CCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 4568999999999999998886 599999999864
No 459
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.84 E-value=0.031 Score=53.77 Aligned_cols=32 Identities=28% Similarity=0.248 Sum_probs=29.0
Q ss_pred cEEEECCChHHHHHHHHhh-cCCcEEEEcCCCc
Q 017664 18 KVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEY 49 (368)
Q Consensus 18 ~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~ 49 (368)
+|+|||.|++|+++|+.|. +|++|+++|+++.
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~ 34 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDS 34 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCc
Confidence 5899999999999999887 5999999998865
No 460
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=94.74 E-value=0.28 Score=49.20 Aligned_cols=48 Identities=19% Similarity=0.207 Sum_probs=34.8
Q ss_pred HHHHHHHcCCcEEEecceeeecccCCC---eEEc---CCCc--EEecCEEEEccCC
Q 017664 187 IALDWLTSKKVEVILNQSVTLNTISDG---LIET---SSGE--TIDTDCHFMCTGK 234 (368)
Q Consensus 187 ~~~~~l~~~gv~i~~~~~v~~i~~~~~---~v~~---~~g~--~i~~d~vi~a~G~ 234 (368)
.+.+.+++.||++++++.+..+..+++ ++.. .+|+ .+.++.||+|||-
T Consensus 175 ~L~~~~~~~gV~i~~~t~v~~Li~d~g~V~GV~~~~~~~g~~~~i~AkaVVLATGG 230 (640)
T PRK07573 175 ALSRQIAAGTVKMYTRTEMLDLVVVDGRARGIVARNLVTGEIERHTADAVVLATGG 230 (640)
T ss_pred HHHHHHHhcCCEEEeceEEEEEEEeCCEEEEEEEEECCCCcEEEEECCEEEECCCC
Confidence 344566778999999999988765555 3332 2453 6889999999995
No 461
>PRK07121 hypothetical protein; Validated
Probab=94.65 E-value=0.33 Score=47.19 Aligned_cols=51 Identities=18% Similarity=0.204 Sum_probs=35.8
Q ss_pred hHHHHHHHHHcCCcEEEecceeeecccCC-C---eEEc-CCCc--EEec-CEEEEccCC
Q 017664 184 ASQIALDWLTSKKVEVILNQSVTLNTISD-G---LIET-SSGE--TIDT-DCHFMCTGK 234 (368)
Q Consensus 184 ~~~~~~~~l~~~gv~i~~~~~v~~i~~~~-~---~v~~-~~g~--~i~~-d~vi~a~G~ 234 (368)
+...+.+.+++.|++++++++++++..++ + .++. .+++ .+.+ +.||+|||-
T Consensus 179 ~~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~~~~~i~a~k~VVlAtGg 237 (492)
T PRK07121 179 LMDPLAKRAAALGVQIRYDTRATRLIVDDDGRVVGVEARRYGETVAIRARKGVVLAAGG 237 (492)
T ss_pred HHHHHHHHHHhCCCEEEeCCEEEEEEECCCCCEEEEEEEeCCcEEEEEeCCEEEECCCC
Confidence 44556667778899999999998876543 3 3333 2332 5778 999999994
No 462
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=94.52 E-value=0.062 Score=43.37 Aligned_cols=34 Identities=29% Similarity=0.329 Sum_probs=29.3
Q ss_pred CCCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCC
Q 017664 14 VEKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEK 47 (368)
Q Consensus 14 ~~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~ 47 (368)
.+..+|+|||||..|..-+..|. .|++|+||+++
T Consensus 11 l~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp~ 45 (157)
T PRK06719 11 LHNKVVVIIGGGKIAYRKASGLKDTGAFVTVVSPE 45 (157)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCc
Confidence 35678999999999999998876 69999999754
No 463
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=94.51 E-value=0.35 Score=37.88 Aligned_cols=77 Identities=19% Similarity=0.296 Sum_probs=52.1
Q ss_pred cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHcCCcEEEecceeeecccCCCeEEc
Q 017664 138 SANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVTLNTISDGLIET 217 (368)
Q Consensus 138 ~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~v~~ 217 (368)
.+++++|+|+|-+|-.++..|... .-.+|+++.|+.. -.+.+.+.+...+++++.-.....
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~~-g~~~i~i~nRt~~--------ra~~l~~~~~~~~~~~~~~~~~~~---------- 71 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAAL-GAKEITIVNRTPE--------RAEALAEEFGGVNIEAIPLEDLEE---------- 71 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHHT-TSSEEEEEESSHH--------HHHHHHHHHTGCSEEEEEGGGHCH----------
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc-CCCEEEEEECCHH--------HHHHHHHHcCccccceeeHHHHHH----------
Confidence 589999999999999999999863 4456999998753 234455555445566654443221
Q ss_pred CCCcEEecCEEEEccCCCC
Q 017664 218 SSGETIDTDCHFMCTGKAM 236 (368)
Q Consensus 218 ~~g~~i~~d~vi~a~G~~p 236 (368)
..-++|.+|.||+...
T Consensus 72 ---~~~~~DivI~aT~~~~ 87 (135)
T PF01488_consen 72 ---ALQEADIVINATPSGM 87 (135)
T ss_dssp ---HHHTESEEEE-SSTTS
T ss_pred ---HHhhCCeEEEecCCCC
Confidence 1235899999988653
No 464
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=94.46 E-value=0.097 Score=50.88 Aligned_cols=37 Identities=24% Similarity=0.354 Sum_probs=33.4
Q ss_pred CcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeee
Q 017664 17 KKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEIT 53 (368)
Q Consensus 17 ~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~ 53 (368)
+||||||||.+||++|..|+ +|++|+|+|+++..|+.
T Consensus 1 ~dvvViGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~ 38 (493)
T TIGR02730 1 YDAIVIGSGIGGLVTATQLAVKGAKVLVLERYLIPGGS 38 (493)
T ss_pred CcEEEECCcHHHHHHHHHHHHCCCcEEEEECCCCCCCc
Confidence 58999999999999999998 59999999999987643
No 465
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=94.46 E-value=0.39 Score=48.02 Aligned_cols=51 Identities=10% Similarity=0.072 Sum_probs=35.4
Q ss_pred hhHHHHHHHHHcCCcEEEecceeeeccc-CCC---eEE---cCCCc--EEecCEEEEccC
Q 017664 183 RASQIALDWLTSKKVEVILNQSVTLNTI-SDG---LIE---TSSGE--TIDTDCHFMCTG 233 (368)
Q Consensus 183 ~~~~~~~~~l~~~gv~i~~~~~v~~i~~-~~~---~v~---~~~g~--~i~~d~vi~a~G 233 (368)
.+...+.+.+++.||+++.++.+.++.. +++ ++. ..+|+ .+.++.||+|||
T Consensus 167 ~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATG 226 (617)
T PTZ00139 167 AMLHTLYGQSLKYDCNFFIEYFALDLIMDEDGECRGVIAMSMEDGSIHRFRAHYTVIATG 226 (617)
T ss_pred HHHHHHHHHHHhCCCEEEeceEEEEEEECCCCEEEEEEEEECCCCeEEEEECCcEEEeCC
Confidence 3445556667778899999988887665 344 332 24564 678999999996
No 466
>PRK08275 putative oxidoreductase; Provisional
Probab=94.43 E-value=0.085 Score=52.07 Aligned_cols=34 Identities=26% Similarity=0.566 Sum_probs=30.5
Q ss_pred CCcEEEECCChHHHHHHHHhhc---CCcEEEEcCCCc
Q 017664 16 KKKVVVIGGGVGGSLLAYHIQS---FADVVLIDEKEY 49 (368)
Q Consensus 16 ~~~vvIIGaG~aGl~aA~~L~~---g~~v~lie~~~~ 49 (368)
.+||||||||.|||+||..+++ |.+|+|+||.+.
T Consensus 9 ~~DVlVIG~G~AGl~AAi~aa~~g~g~~VilveK~~~ 45 (554)
T PRK08275 9 ETDILVIGGGTAGPMAAIKAKERNPALRVLLLEKANV 45 (554)
T ss_pred ecCEEEECcCHHHHHHHHHHHHhCCCCeEEEEeCCCC
Confidence 5799999999999999999873 689999999875
No 467
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=94.42 E-value=0.098 Score=47.85 Aligned_cols=54 Identities=22% Similarity=0.170 Sum_probs=45.7
Q ss_pred CchhHHHHHHHHHcCCcEEEecceeeecccCCC---eEEcCCCcEEecCEEEEccCCC
Q 017664 181 GSRASQIALDWLTSKKVEVILNQSVTLNTISDG---LIETSSGETIDTDCHFMCTGKA 235 (368)
Q Consensus 181 ~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~---~v~~~~g~~i~~d~vi~a~G~~ 235 (368)
+..+...+.+.+++.|++++.+++|+.++.+++ .|.+.+| ++.+|.||+|+|..
T Consensus 136 p~~l~~~l~~~~~~~g~~~~~~~~v~~i~~~~~~~~~v~~~~g-~~~a~~vV~a~G~~ 192 (337)
T TIGR02352 136 PRALLKALEKALEKLGVEIIEHTEVQHIEIRGEKVTAIVTPSG-DVQADQVVLAAGAW 192 (337)
T ss_pred hHHHHHHHHHHHHHcCCEEEccceEEEEEeeCCEEEEEEcCCC-EEECCEEEEcCChh
Confidence 457778888999999999999999999987665 4677777 79999999999965
No 468
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=94.41 E-value=0.27 Score=46.45 Aligned_cols=47 Identities=19% Similarity=0.233 Sum_probs=32.8
Q ss_pred HHHHHHc-CCcEEEecceeeecccCCC----eEEc-CC-C--cEEecCEEEEccCC
Q 017664 188 ALDWLTS-KKVEVILNQSVTLNTISDG----LIET-SS-G--ETIDTDCHFMCTGK 234 (368)
Q Consensus 188 ~~~~l~~-~gv~i~~~~~v~~i~~~~~----~v~~-~~-g--~~i~~d~vi~a~G~ 234 (368)
+.+.+++ .+|+++.++.+.++..+++ ++.+ .+ + ..+.++.+|+|||-
T Consensus 139 L~~~v~~~p~I~v~e~~~a~~li~~~~~~~~Gv~~~~~~~~~~~~~a~~vVLATGG 194 (518)
T COG0029 139 LLKKVRNRPNITVLEGAEALDLIIEDGIGVAGVLVLNRNGELGTFRAKAVVLATGG 194 (518)
T ss_pred HHHHHhcCCCcEEEecchhhhhhhcCCceEeEEEEecCCCeEEEEecCeEEEecCC
Confidence 4455554 6899999988777766665 3333 22 2 47889999999994
No 469
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=94.40 E-value=0.081 Score=48.66 Aligned_cols=98 Identities=19% Similarity=0.158 Sum_probs=53.2
Q ss_pred eEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccc-------cc----------------------------------
Q 017664 141 SVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLL-------EF---------------------------------- 179 (368)
Q Consensus 141 ~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l-------~~---------------------------------- 179 (368)
.++.||.|+..+-+|..+.+. ...++.++++.+.+. +.
T Consensus 4 D~igIG~GP~nLslA~~l~~~-~~~~~~f~e~~~~f~Wh~gmll~~~~~q~~fl~Dlvt~~~P~s~~sflnYL~~~~rl~ 82 (341)
T PF13434_consen 4 DLIGIGFGPFNLSLAALLEEH-GDLKALFLERRPSFSWHPGMLLPGARMQVSFLKDLVTLRDPTSPFSFLNYLHEHGRLY 82 (341)
T ss_dssp SEEEE--SHHHHHHHHHHHHH-H---EEEEES-SS--TTGGG--SS-B-SS-TTSSSSTTT-TTSTTSHHHHHHHTT-HH
T ss_pred eEEEEeeCHHHHHHHHHhhhc-CCCCEEEEecCCCCCcCCccCCCCCccccccccccCcCcCCCCcccHHHHHHHcCChh
Confidence 478999999999999988875 367888899776430 00
Q ss_pred -------cC---chhHHHHHHHHHcCCcEEEecceeeecccCCC------eEEc----CCCcEEecCEEEEccCCCCCch
Q 017664 180 -------VG---SRASQIALDWLTSKKVEVILNQSVTLNTISDG------LIET----SSGETIDTDCHFMCTGKAMASS 239 (368)
Q Consensus 180 -------~~---~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~------~v~~----~~g~~i~~d~vi~a~G~~p~~~ 239 (368)
+. .++.++++-..++..-.+..+.+|+.|+...+ .|.+ .+++++.|+.|++++|..|..+
T Consensus 83 ~f~~~~~~~p~R~ef~dYl~Wva~~~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~~~g~~~~~~ar~vVla~G~~P~iP 162 (341)
T PF13434_consen 83 EFYNRGYFFPSRREFNDYLRWVAEQLDNQVRYGSEVTSIEPDDDGDEDLFRVTTRDSDGDGETYRARNVVLATGGQPRIP 162 (341)
T ss_dssp HHHHH--SS-BHHHHHHHHHHHHCCGTTTEEESEEEEEEEEEEETTEEEEEEEEEETTS-EEEEEESEEEE----EE---
T ss_pred hhhhcCCCCCCHHHHHHHHHHHHHhCCCceEECCEEEEEEEecCCCccEEEEEEeecCCCeeEEEeCeEEECcCCCCCCC
Confidence 00 01111121222334433777899998876532 5555 2446899999999999887643
No 470
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.36 E-value=0.17 Score=48.72 Aligned_cols=85 Identities=15% Similarity=0.140 Sum_probs=58.3
Q ss_pred eEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHcCCcEEEecceeeecccCCCeEEcCCC
Q 017664 141 SVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVTLNTISDGLIETSSG 220 (368)
Q Consensus 141 ~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~v~~~~g 220 (368)
++.|+|.|.+|+.+|..|.+ .|.+|+++++.+.. ......+.|++.|++++.+..... + .+..
T Consensus 2 ~v~viG~G~sG~s~a~~l~~--~G~~V~~~D~~~~~-------~~~~~~~~l~~~gi~~~~g~~~~~-~----~~~~--- 64 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKA--QGWEVVVSDRNDSP-------ELLERQQELEQEGITVKLGKPLEL-E----SFQP--- 64 (459)
T ss_pred eEEEEccCHHHHHHHHHHHH--CCCEEEEECCCCch-------hhHHHHHHHHHcCCEEEECCccch-h----hhhH---
Confidence 68999999999999888874 58899998876542 123334567788999987654320 0 0000
Q ss_pred cEEecCEEEEccCCCCCchhhh
Q 017664 221 ETIDTDCHFMCTGKAMASSWLR 242 (368)
Q Consensus 221 ~~i~~d~vi~a~G~~p~~~~~~ 242 (368)
..-.+|.||.++|..++.+.+.
T Consensus 65 ~~~~~d~vv~s~gi~~~~~~~~ 86 (459)
T PRK02705 65 WLDQPDLVVVSPGIPWDHPTLV 86 (459)
T ss_pred HhhcCCEEEECCCCCCCCHHHH
Confidence 0124799999999988766554
No 471
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=94.31 E-value=0.27 Score=41.48 Aligned_cols=74 Identities=15% Similarity=0.183 Sum_probs=48.2
Q ss_pred cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHcCCcEEEecceeeecccCCCeEEc
Q 017664 138 SANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVTLNTISDGLIET 217 (368)
Q Consensus 138 ~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~v~~ 217 (368)
.+++++|||+|..|...+..|.+ .+.+|+++.+.. ...+.+...+..+.+.... +
T Consensus 9 ~~k~vLVIGgG~va~~ka~~Ll~--~ga~V~VIs~~~----------~~~l~~l~~~~~i~~~~~~-------------~ 63 (202)
T PRK06718 9 SNKRVVIVGGGKVAGRRAITLLK--YGAHIVVISPEL----------TENLVKLVEEGKIRWKQKE-------------F 63 (202)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH--CCCeEEEEcCCC----------CHHHHHHHhCCCEEEEecC-------------C
Confidence 47899999999999999988885 468999996431 2333444444445543211 1
Q ss_pred CCCcEEecCEEEEccCCCC
Q 017664 218 SSGETIDTDCHFMCTGKAM 236 (368)
Q Consensus 218 ~~g~~i~~d~vi~a~G~~p 236 (368)
.....-.+|+||.||+...
T Consensus 64 ~~~~l~~adlViaaT~d~e 82 (202)
T PRK06718 64 EPSDIVDAFLVIAATNDPR 82 (202)
T ss_pred ChhhcCCceEEEEcCCCHH
Confidence 1112235899999988664
No 472
>PF02852 Pyr_redox_dim: Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain; InterPro: IPR004099 This entry represents a dimerisation domain that is usually found at the C-terminal of both class I and class II oxidoreductases, as well as in NADH oxidases and peroxidases [, , ].; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0045454 cell redox homeostasis, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3II4_B 2A8X_A 2BC0_B 2BC1_B 2W0H_A 2X50_B 2JK6_A 2YAU_A 2EQ9_E 2EQ6_B ....
Probab=94.27 E-value=0.007 Score=45.72 Aligned_cols=47 Identities=30% Similarity=0.375 Sum_probs=34.0
Q ss_pred CCCeEEEeecCCcceeE--------ecCc-----cccCccceeeeccccchhHHHHHcCCCC
Q 017664 317 GYPIALVSLGRREGVAH--------FPFL-----TISGRIPGWIKSRDLFVGKTRKQLGLKP 365 (368)
Q Consensus 317 ~~~~~~~~~g~~~~~~~--------~~~~-----~~~~~~~~~~k~~~~~~~~~~~~lG~~~ 365 (368)
.|+++.+|++++++... .++. .+.+...+++|+ ++++++++|||+|+
T Consensus 8 ~p~ia~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~Kl--i~d~~t~~IlGa~~ 67 (110)
T PF02852_consen 8 DPEIASVGLTEEEARKQGIDYEVVTVPFKSNDRARYYPETEGFVKL--IFDKKTGRILGAQI 67 (110)
T ss_dssp SSEEEEEES-HHHHHHHTSGEEEEEEEEGGEHHHHHTTTTEEEEEE--EEETTTTBEEEEEE
T ss_pred CCceEEEccCHHHHHhccCceeeeeecccccchhcccCCcceeeEE--EEEeeccceeeeee
Confidence 57899999988776422 1221 134557899999 99999999999986
No 473
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=94.26 E-value=0.34 Score=40.52 Aligned_cols=36 Identities=36% Similarity=0.555 Sum_probs=32.0
Q ss_pred cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecC
Q 017664 138 SANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRG 173 (368)
Q Consensus 138 ~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~ 173 (368)
.-..++|||+|.+|+..|..+.+++|+.+|.+|+.+
T Consensus 75 AesDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~S 110 (328)
T KOG2960|consen 75 AESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESS 110 (328)
T ss_pred hccceEEECCCccccceeeeeeccCCCceEEEEEee
Confidence 356799999999999999999988899999999865
No 474
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=94.19 E-value=0.13 Score=47.23 Aligned_cols=35 Identities=43% Similarity=0.814 Sum_probs=30.3
Q ss_pred CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccc
Q 017664 140 NSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKL 176 (368)
Q Consensus 140 ~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~ 176 (368)
..|+|||+|++|+.+|..+.+ .+.+|.+++..+.+
T Consensus 4 ~dviIIGgGpAGlMaA~~aa~--~G~~V~lid~~~k~ 38 (408)
T COG2081 4 FDVIIIGGGPAGLMAAISAAK--AGRRVLLIDKGPKL 38 (408)
T ss_pred ceEEEECCCHHHHHHHHHHhh--cCCEEEEEecCccc
Confidence 579999999999999999885 68999999987643
No 475
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=94.10 E-value=0.11 Score=47.70 Aligned_cols=35 Identities=34% Similarity=0.530 Sum_probs=28.9
Q ss_pred eEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccc
Q 017664 141 SVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLL 177 (368)
Q Consensus 141 ~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l 177 (368)
+|+|||+|+.|+-+|..|.+ .+.+|+++++.+.+.
T Consensus 3 dV~IvGaG~aGl~~A~~L~~--~G~~v~i~E~~~~~~ 37 (356)
T PF01494_consen 3 DVAIVGAGPAGLAAALALAR--AGIDVTIIERRPDPR 37 (356)
T ss_dssp EEEEE--SHHHHHHHHHHHH--TTCEEEEEESSSSCC
T ss_pred eEEEECCCHHHHHHHHHHHh--cccccccchhccccc
Confidence 68999999999999999996 489999999987653
No 476
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=94.06 E-value=0.31 Score=44.94 Aligned_cols=33 Identities=27% Similarity=0.413 Sum_probs=28.0
Q ss_pred CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCc
Q 017664 140 NSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGP 174 (368)
Q Consensus 140 ~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~ 174 (368)
.+|+|||||..|+-.|..|.+ .+.+|.+++.+.
T Consensus 3 ~~VvIvGgGI~Gla~A~~l~r--~G~~v~VlE~~e 35 (420)
T KOG2614|consen 3 PKVVIVGGGIVGLATALALHR--KGIDVVVLESRE 35 (420)
T ss_pred CcEEEECCcHHHHHHHHHHHH--cCCeEEEEeecc
Confidence 579999999999999999985 588888887653
No 477
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=94.02 E-value=0.087 Score=44.50 Aligned_cols=33 Identities=30% Similarity=0.435 Sum_probs=29.2
Q ss_pred CCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCC
Q 017664 15 EKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEK 47 (368)
Q Consensus 15 ~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~ 47 (368)
+.++++|||||-.|...|..|. .|.+|+|++++
T Consensus 9 ~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~ 42 (202)
T PRK06718 9 SNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPE 42 (202)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Confidence 4679999999999999998876 59999999875
No 478
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=93.97 E-value=0.24 Score=46.02 Aligned_cols=65 Identities=17% Similarity=0.154 Sum_probs=47.9
Q ss_pred ecCcccccc--cCchhHHHHHHHHHcCCcEEEecceeeecccCCC-eEEcCCC-cEEecCEEEEccCCCC
Q 017664 171 HRGPKLLEF--VGSRASQIALDWLTSKKVEVILNQSVTLNTISDG-LIETSSG-ETIDTDCHFMCTGKAM 236 (368)
Q Consensus 171 ~~~~~~l~~--~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~-~v~~~~g-~~i~~d~vi~a~G~~p 236 (368)
+++.++.|. -...+.+.+.+.+++.||+++++++|..|+ +++ .+.+.++ ..+.+|.||+|||-.+
T Consensus 73 e~~grvfP~S~~A~sVv~~L~~~l~~~gV~i~~~~~V~~i~-~~~~~v~~~~~~~~~~a~~vIlAtGG~s 141 (376)
T TIGR03862 73 GSSGRVFPVEMKAAPLLRAWLKRLAEQGVQFHTRHRWIGWQ-GGTLRFETPDGQSTIEADAVVLALGGAS 141 (376)
T ss_pred CCCCEECCCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEe-CCcEEEEECCCceEEecCEEEEcCCCcc
Confidence 344455552 344677888999999999999999999982 223 5665433 4699999999999764
No 479
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.92 E-value=0.076 Score=50.95 Aligned_cols=34 Identities=50% Similarity=0.668 Sum_probs=30.6
Q ss_pred CCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCC
Q 017664 15 EKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKE 48 (368)
Q Consensus 15 ~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~ 48 (368)
+.++++|+|+|..|+++|..|. +|++|+++|++.
T Consensus 4 ~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 4 KGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 4578999999999999999987 599999999975
No 480
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=93.68 E-value=0.18 Score=45.32 Aligned_cols=34 Identities=32% Similarity=0.364 Sum_probs=29.7
Q ss_pred CcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCce
Q 017664 17 KKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYF 50 (368)
Q Consensus 17 ~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~ 50 (368)
.+|.|||+|.=|-+.|..|. +|++|.+.-+++..
T Consensus 2 ~kI~ViGaGswGTALA~~la~ng~~V~lw~r~~~~ 36 (329)
T COG0240 2 MKIAVIGAGSWGTALAKVLARNGHEVRLWGRDEEI 36 (329)
T ss_pred ceEEEEcCChHHHHHHHHHHhcCCeeEEEecCHHH
Confidence 57999999999999999997 58999999887643
No 481
>PRK06475 salicylate hydroxylase; Provisional
Probab=93.67 E-value=0.14 Score=48.32 Aligned_cols=56 Identities=29% Similarity=0.364 Sum_probs=38.9
Q ss_pred CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccc-cCchhHHHHHHHHHcCCc
Q 017664 140 NSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEF-VGSRASQIALDWLTSKKV 197 (368)
Q Consensus 140 ~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~-~~~~~~~~~~~~l~~~gv 197 (368)
++|+|||+|+.|+-+|..|.+ .+.+|+++++.+.+... ..-.+.....+.|++.|+
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~--~G~~V~i~E~~~~~~~~g~gi~l~~~~~~~L~~~Gl 59 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAA--RGWAVTIIEKAQELSEVGAGLQLAPNAMRHLERLGV 59 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHh--CCCcEEEEecCCccCcCCccceeChhHHHHHHHCCC
Confidence 689999999999999999885 58899999988754321 111223344455555554
No 482
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=93.67 E-value=0.11 Score=48.76 Aligned_cols=54 Identities=13% Similarity=0.179 Sum_probs=45.0
Q ss_pred CchhHHHHHHHHHcCCcEEEecceeeecccCCC--eEEcCCCcEEecCEEEEccCCC
Q 017664 181 GSRASQIALDWLTSKKVEVILNQSVTLNTISDG--LIETSSGETIDTDCHFMCTGKA 235 (368)
Q Consensus 181 ~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~--~v~~~~g~~i~~d~vi~a~G~~ 235 (368)
+..+...+.+.+++ |++++.++.|..++.+++ .+++.+|+.+.+|.||+|+|..
T Consensus 134 p~~~~~~l~~~~~~-G~~i~~~~~V~~i~~~~~~~~v~t~~g~~~~a~~vV~a~G~~ 189 (381)
T TIGR03197 134 PPQLCRALLAHAGI-RLTLHFNTEITSLERDGEGWQLLDANGEVIAASVVVLANGAQ 189 (381)
T ss_pred hHHHHHHHHhccCC-CcEEEeCCEEEEEEEcCCeEEEEeCCCCEEEcCEEEEcCCcc
Confidence 34667777788888 999999999999876655 5778888779999999999965
No 483
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=93.60 E-value=0.078 Score=44.12 Aligned_cols=33 Identities=33% Similarity=0.290 Sum_probs=25.7
Q ss_pred CcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCc
Q 017664 17 KKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEY 49 (368)
Q Consensus 17 ~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~ 49 (368)
++|.|||.|+.|+..|..|+ .|++|+.+|.++.
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~ 34 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEE 34 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HH
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChH
Confidence 47999999999999999987 5999999998875
No 484
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=93.57 E-value=0.27 Score=45.15 Aligned_cols=63 Identities=14% Similarity=0.052 Sum_probs=40.6
Q ss_pred CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHcCCcEEEecceeeeccc
Q 017664 139 ANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVTLNTI 210 (368)
Q Consensus 139 ~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~ 210 (368)
+.++.++.|-..+.|+|... | ..+++...++. -..+....+++.+......++.+..+..++.
T Consensus 138 ~~~~~~lsGP~~A~Eva~~~----p-t~~~ia~~~~~----~~~~~a~~~~~lf~~~~frv~~s~Dv~GvEl 200 (342)
T TIGR03376 138 GIPCGVLSGANLANEVAKEK----F-SETTVGYRDPA----DFDVDARVLKALFHRPYFRVNVVDDVAGVEI 200 (342)
T ss_pred CCCeEEeeCcchHHHHHcCC----C-ceEEEEeCCCc----chHHHHHHHHHHhCCCCEEEEEcCCcccchh
Confidence 45677777777766666532 1 23444433210 0036788899999988899998888876664
No 485
>KOG4405 consensus GDP dissociation inhibitor [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.54 E-value=0.084 Score=48.38 Aligned_cols=47 Identities=40% Similarity=0.564 Sum_probs=39.4
Q ss_pred CCCCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCceeeeccceee
Q 017664 13 LVEKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEYFEITWASLRA 59 (368)
Q Consensus 13 ~~~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~~~~~~~~~~~ 59 (368)
.+..+|+||||.|..=-..|.+.. .|.+|+=+|+++++|..|..+.-
T Consensus 5 lP~~fDvVViGTGlpESilAAAcSrsG~sVLHlDsn~yYGg~waSfSm 52 (547)
T KOG4405|consen 5 LPEEFDVVVIGTGLPESILAAACSRSGSSVLHLDSNEYYGGNWASFSM 52 (547)
T ss_pred CchhccEEEEcCCCcHHHHHHHhhhcCCceEeccCccccCCcccceee
Confidence 456899999999988877776665 49999999999999999977653
No 486
>PRK07395 L-aspartate oxidase; Provisional
Probab=93.46 E-value=0.57 Score=46.22 Aligned_cols=51 Identities=14% Similarity=0.119 Sum_probs=33.6
Q ss_pred hHHHHHHHHHc-CCcEEEecceeeecccCC--C---eE-EcCCCc--EEecCEEEEccCC
Q 017664 184 ASQIALDWLTS-KKVEVILNQSVTLNTISD--G---LI-ETSSGE--TIDTDCHFMCTGK 234 (368)
Q Consensus 184 ~~~~~~~~l~~-~gv~i~~~~~v~~i~~~~--~---~v-~~~~g~--~i~~d~vi~a~G~ 234 (368)
+...+.+.+++ .||++++++.+.++..++ + ++ ...+|+ .+.++.||+|||-
T Consensus 136 i~~~L~~~~~~~~gi~i~~~~~v~~Li~~~~~g~v~Gv~~~~~g~~~~i~AkaVILATGG 195 (553)
T PRK07395 136 IVTTLTEQVLQRPNIEIISQALALSLWLEPETGRCQGISLLYQGQITWLRAGAVILATGG 195 (553)
T ss_pred HHHHHHHHHhhcCCcEEEECcChhhheecCCCCEEEEEEEEECCeEEEEEcCEEEEcCCC
Confidence 34445555554 488998888888775542 3 23 234554 4789999999995
No 487
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=93.39 E-value=0.11 Score=48.37 Aligned_cols=46 Identities=22% Similarity=0.354 Sum_probs=39.0
Q ss_pred cEEeCCCeeecCCCCeEEecccCCCCccchHHHHHHHHHHHHHHHHHHH
Q 017664 255 RLMVDENLRVRGFKNVFAIGDITDIPEIKQGYLAQKHALVTAKNLKKLM 303 (368)
Q Consensus 255 ~i~vd~~~~~~~~~~ifa~GD~~~~~~~~~~~~a~~~g~~aa~~i~~~l 303 (368)
.+.+|+.+.+ +.+|+|++||+++... ....|...|-.+|+.|++..
T Consensus 438 ri~~d~~~~t-~i~gLy~aGdGAG~ar--gI~~Aaa~Gi~~A~~i~~k~ 483 (486)
T COG2509 438 RIKVDEDLST-SIKGLYPAGDGAGLAR--GIVSAAADGIKAAEGIARKY 483 (486)
T ss_pred eEeeccccee-eecceEEccccccccc--hhHHHhhhhHHHHHHHHHHh
Confidence 5788988666 8999999999998754 56789999999999998754
No 488
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=93.38 E-value=0.083 Score=43.74 Aligned_cols=31 Identities=35% Similarity=0.374 Sum_probs=0.0
Q ss_pred cEEEECCChHHHHHHHHhhc-CCcEEEEcCCC
Q 017664 18 KVVVIGGGVGGSLLAYHIQS-FADVVLIDEKE 48 (368)
Q Consensus 18 ~vvIIGaG~aGl~aA~~L~~-g~~v~lie~~~ 48 (368)
+|.|||+|..|...|..+.. |++|+++|+++
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~ 32 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSP 32 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSH
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECCh
No 489
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=93.26 E-value=0.11 Score=42.42 Aligned_cols=34 Identities=38% Similarity=0.329 Sum_probs=28.2
Q ss_pred CCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCC
Q 017664 15 EKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKE 48 (368)
Q Consensus 15 ~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~ 48 (368)
.+.+|+|+|+|.+|..|+..|. .|++++++|...
T Consensus 19 ~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~ 53 (168)
T PF01262_consen 19 PPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERP 53 (168)
T ss_dssp -T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSH
T ss_pred CCeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCH
Confidence 4679999999999999999887 499999999864
No 490
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=93.25 E-value=0.17 Score=39.66 Aligned_cols=34 Identities=24% Similarity=0.386 Sum_probs=29.7
Q ss_pred CCCcEEEECCChHHHHHHHHhh-cCCc-EEEEcCCC
Q 017664 15 EKKKVVVIGGGVGGSLLAYHIQ-SFAD-VVLIDEKE 48 (368)
Q Consensus 15 ~~~~vvIIGaG~aGl~aA~~L~-~g~~-v~lie~~~ 48 (368)
+..+++|||+|-+|-+++++|. .|.+ |+|+.|+.
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~ 46 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTP 46 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSH
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCH
Confidence 4679999999999999999997 5776 99999874
No 491
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.16 E-value=0.12 Score=46.50 Aligned_cols=37 Identities=35% Similarity=0.295 Sum_probs=31.6
Q ss_pred CCCCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCCc
Q 017664 13 LVEKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKEY 49 (368)
Q Consensus 13 ~~~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~~ 49 (368)
|+...+|.|||+|.-|...|..|. +|++|+++|+++.
T Consensus 1 ~~~~~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~ 38 (292)
T PRK07530 1 MMAIKKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSAD 38 (292)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence 344568999999999999999887 5999999998753
No 492
>PRK06847 hypothetical protein; Provisional
Probab=93.01 E-value=0.22 Score=46.34 Aligned_cols=36 Identities=36% Similarity=0.450 Sum_probs=31.3
Q ss_pred CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccc
Q 017664 139 ANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKL 176 (368)
Q Consensus 139 ~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~ 176 (368)
.++|+|||+|++|+-+|..|.+ .+.+|+++++.+.+
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~--~g~~v~v~E~~~~~ 39 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRR--AGIAVDLVEIDPEW 39 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHh--CCCCEEEEecCCCC
Confidence 5689999999999999999985 58899999987653
No 493
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=92.94 E-value=0.43 Score=40.74 Aligned_cols=73 Identities=18% Similarity=0.162 Sum_probs=48.6
Q ss_pred cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHcCCcEEEecceeeecccCCCeEEc
Q 017664 138 SANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVTLNTISDGLIET 217 (368)
Q Consensus 138 ~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~v~~ 217 (368)
++++|+|||||..|..=+..|.+ .+.+|+++.+. +...+.+......++++.... +
T Consensus 24 ~~~~VLVVGGG~VA~RK~~~Ll~--~gA~VtVVap~----------i~~el~~l~~~~~i~~~~r~~----~-------- 79 (223)
T PRK05562 24 NKIKVLIIGGGKAAFIKGKTFLK--KGCYVYILSKK----------FSKEFLDLKKYGNLKLIKGNY----D-------- 79 (223)
T ss_pred CCCEEEEECCCHHHHHHHHHHHh--CCCEEEEEcCC----------CCHHHHHHHhCCCEEEEeCCC----C--------
Confidence 36799999999999988887775 57899998743 223344445556677664321 1
Q ss_pred CCCcEEecCEEEEccCCC
Q 017664 218 SSGETIDTDCHFMCTGKA 235 (368)
Q Consensus 218 ~~g~~i~~d~vi~a~G~~ 235 (368)
.+..-.+++||.||+-.
T Consensus 80 -~~dl~g~~LViaATdD~ 96 (223)
T PRK05562 80 -KEFIKDKHLIVIATDDE 96 (223)
T ss_pred -hHHhCCCcEEEECCCCH
Confidence 11223489999998743
No 494
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.91 E-value=0.65 Score=44.67 Aligned_cols=83 Identities=17% Similarity=0.130 Sum_probs=57.5
Q ss_pred cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccccCchhHHHHHHHHHcCCcEEEecceeeecccCCCeEEc
Q 017664 138 SANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVTLNTISDGLIET 217 (368)
Q Consensus 138 ~~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~v~~ 217 (368)
.++++.|+|.|.+|.-+|..|.+ .|.+|++.++.+.. ......+.+++.|+.++.+.... +
T Consensus 13 ~~~~i~v~G~G~sG~a~a~~L~~--~G~~V~~~D~~~~~-------~~~~~~~~l~~~gi~~~~~~~~~----~------ 73 (458)
T PRK01710 13 KNKKVAVVGIGVSNIPLIKFLVK--LGAKVTAFDKKSEE-------ELGEVSNELKELGVKLVLGENYL----D------ 73 (458)
T ss_pred cCCeEEEEcccHHHHHHHHHHHH--CCCEEEEECCCCCc-------cchHHHHHHHhCCCEEEeCCCCh----H------
Confidence 37899999999999988888874 57899998876531 11122344777899887653210 0
Q ss_pred CCCcEEecCEEEEccCCCCCchhhh
Q 017664 218 SSGETIDTDCHFMCTGKAMASSWLR 242 (368)
Q Consensus 218 ~~g~~i~~d~vi~a~G~~p~~~~~~ 242 (368)
..-++|.||.++|..|..+.+.
T Consensus 74 ---~~~~~dlVV~Spgi~~~~p~~~ 95 (458)
T PRK01710 74 ---KLDGFDVIFKTPSMRIDSPELV 95 (458)
T ss_pred ---HhccCCEEEECCCCCCCchHHH
Confidence 0124899999999988766554
No 495
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=92.89 E-value=0.14 Score=49.10 Aligned_cols=35 Identities=37% Similarity=0.487 Sum_probs=27.7
Q ss_pred eEEEEcCchhHHHHHHHHhhhCCC-CeEEEEecCcc
Q 017664 141 SVLIVGGGPTGVELAGEIAVDFPD-KKVILVHRGPK 175 (368)
Q Consensus 141 ~v~VvG~g~~~~e~a~~l~~~~~~-~~v~~i~~~~~ 175 (368)
+|+|||||..|.-.|..|++..+. .+|+++++...
T Consensus 1 ~v~IvGgG~aG~~~A~~L~~~~~~~~~v~lie~~~~ 36 (454)
T PF04820_consen 1 DVVIVGGGTAGWMAAAALARAGPDALSVTLIESPDI 36 (454)
T ss_dssp EEEEE--SHHHHHHHHHHHHHCTCSSEEEEEE-SSS
T ss_pred CEEEECCCHHHHHHHHHHHHhCCCCcEEEEEecCCC
Confidence 589999999999999999987665 79999997753
No 496
>PRK06184 hypothetical protein; Provisional
Probab=92.84 E-value=0.21 Score=48.70 Aligned_cols=35 Identities=43% Similarity=0.658 Sum_probs=30.9
Q ss_pred CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccc
Q 017664 140 NSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKL 176 (368)
Q Consensus 140 ~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~ 176 (368)
..|+|||+|++|+-+|..|.+ .+.+|+++++.+.+
T Consensus 4 ~dVlIVGaGpaGl~~A~~La~--~Gi~v~viE~~~~~ 38 (502)
T PRK06184 4 TDVLIVGAGPTGLTLAIELAR--RGVSFRLIEKAPEP 38 (502)
T ss_pred CcEEEECCCHHHHHHHHHHHH--CCCcEEEEeCCCCC
Confidence 469999999999999999985 58999999988765
No 497
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=92.82 E-value=0.22 Score=46.75 Aligned_cols=57 Identities=37% Similarity=0.402 Sum_probs=43.6
Q ss_pred CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecC-cccccc-cCchhHHHHHHHHHcCCc
Q 017664 139 ANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRG-PKLLEF-VGSRASQIALDWLTSKKV 197 (368)
Q Consensus 139 ~~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~-~~~l~~-~~~~~~~~~~~~l~~~gv 197 (368)
..+|+|||+|+.|+-+|..|.+ .+.+|+++++. ..+.+. ....+.....+.|++.|+
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~--~G~~V~l~E~~~~~~~~~~r~~~l~~~~~~~L~~lG~ 60 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALAR--AGLDVTLLERAPRELLERGRGIALSPNALRALERLGL 60 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHh--CCCcEEEEccCccccccCceeeeecHhHHHHHHHcCC
Confidence 3579999999999999999985 58999999998 333332 233456667778888887
No 498
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=92.69 E-value=0.14 Score=47.60 Aligned_cols=34 Identities=35% Similarity=0.391 Sum_probs=29.8
Q ss_pred CCCcEEEECCChHHHHHHHHhh-cCCcEEEEcCCC
Q 017664 15 EKKKVVVIGGGVGGSLLAYHIQ-SFADVVLIDEKE 48 (368)
Q Consensus 15 ~~~~vvIIGaG~aGl~aA~~L~-~g~~v~lie~~~ 48 (368)
...+++|||+|.+|+.+|..|+ .|.+|+++|+++
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~ 200 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLGATVTILDINI 200 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence 3467999999999999999998 499999999864
No 499
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=92.67 E-value=0.19 Score=47.62 Aligned_cols=37 Identities=27% Similarity=0.440 Sum_probs=33.4
Q ss_pred CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccc
Q 017664 140 NSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKL 176 (368)
Q Consensus 140 ~~v~VvG~g~~~~e~a~~l~~~~~~~~v~~i~~~~~~ 176 (368)
++++|||+|.+|+-.|..|.++.|..++++++.+++.
T Consensus 1 ~~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~ 37 (444)
T COG1232 1 MKIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRV 37 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCC
Confidence 4799999999999999999998888999999988654
No 500
>PRK07804 L-aspartate oxidase; Provisional
Probab=92.64 E-value=0.21 Score=49.08 Aligned_cols=50 Identities=10% Similarity=0.036 Sum_probs=36.8
Q ss_pred CCcEEeCCCeeecCCCCeEEecccCCC--C-ccc----hHHHHHHHHHHHHHHHHHHH
Q 017664 253 RGRLMVDENLRVRGFKNVFAIGDITDI--P-EIK----QGYLAQKHALVTAKNLKKLM 303 (368)
Q Consensus 253 ~g~i~vd~~~~~~~~~~ifa~GD~~~~--~-~~~----~~~~a~~~g~~aa~~i~~~l 303 (368)
.|.+.||.++|| +.|++||+|+|++. . ... ....+.-.|+.+++++....
T Consensus 357 ~GGi~vd~~~~t-~i~GLyAaGe~~~~g~hGa~~l~~~sl~~~~v~G~~ag~~aa~~~ 413 (541)
T PRK07804 357 CGGVVTDVYGRT-SVPGLYAAGEVACTGVHGANRLASNSLLEGLVVGERAGAAAAAHA 413 (541)
T ss_pred CCCEEECCCCcc-cCCCeEEcccccccccCCCcccHHHHHHHHHHHHHHHHHHHHHhh
Confidence 478999999998 79999999999742 1 111 22356777888888887654
Done!