BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 017665
         (368 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1UT4|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The
           Nac Family Of Transcription Factors
 pdb|1UT4|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The
           Nac Family Of Transcription Factors
 pdb|1UT7|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The
           Nac Family Of Transcription Factors
 pdb|1UT7|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The
           Nac Family Of Transcription Factors
 pdb|4DUL|A Chain A, Anac019 Nac Domain Crystal Form Iv
 pdb|4DUL|B Chain B, Anac019 Nac Domain Crystal Form Iv
          Length = 171

 Score =  227 bits (578), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 104/164 (63%), Positives = 124/164 (75%), Gaps = 14/164 (8%)

Query: 10  ALPPGFRFHPTDEELILHYLKKKVASMPFPVSIIADVDIYKFDPWDLPAKAAFGEKEWYF 69
           +LPPGFRF+PTDEEL++ YL +K A   F + +IA++D+YKFDPW LP KA FGEKEWYF
Sbjct: 16  SLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKEWYF 75

Query: 70  FSPRDRKYPNGARPNRAAASGYWKATGTDKIILATSVGAHQENIGVKKALVFYKGRPPKG 129
           FSPRDRKYPNG+RPNR A SGYWKATGTDKII         + +G+KKALVFY G+ PKG
Sbjct: 76  FSPRDRKYPNGSRPNRVAGSGYWKATGTDKII-----STEGQRVGIKKALVFYIGKAPKG 130

Query: 130 VKTNWIMHEYRLAENPKNLNHTKMRPKDSSMRLDDWVLCRIYRK 173
            KTNWIMHEYRL E  +         ++ S +LDDWVLCRIY+K
Sbjct: 131 TKTNWIMHEYRLIEPSR---------RNGSTKLDDWVLCRIYKK 165


>pdb|3SWM|A Chain A, The Nac Domain Of Anac019 In Complex With Dna, Gold
           Derivative
 pdb|3SWM|B Chain B, The Nac Domain Of Anac019 In Complex With Dna, Gold
           Derivative
 pdb|3SWM|C Chain C, The Nac Domain Of Anac019 In Complex With Dna, Gold
           Derivative
 pdb|3SWM|D Chain D, The Nac Domain Of Anac019 In Complex With Dna, Gold
           Derivative
 pdb|3SWP|A Chain A, Anac019 Nac Domain In Complex With Dna
 pdb|3SWP|B Chain B, Anac019 Nac Domain In Complex With Dna
 pdb|3SWP|C Chain C, Anac019 Nac Domain In Complex With Dna
 pdb|3SWP|D Chain D, Anac019 Nac Domain In Complex With Dna
          Length = 174

 Score =  226 bits (577), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 104/164 (63%), Positives = 124/164 (75%), Gaps = 14/164 (8%)

Query: 10  ALPPGFRFHPTDEELILHYLKKKVASMPFPVSIIADVDIYKFDPWDLPAKAAFGEKEWYF 69
           +LPPGFRF+PTDEEL++ YL +K A   F + +IA++D+YKFDPW LP KA FGEKEWYF
Sbjct: 19  SLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKEWYF 78

Query: 70  FSPRDRKYPNGARPNRAAASGYWKATGTDKIILATSVGAHQENIGVKKALVFYKGRPPKG 129
           FSPRDRKYPNG+RPNR A SGYWKATGTDKII         + +G+KKALVFY G+ PKG
Sbjct: 79  FSPRDRKYPNGSRPNRVAGSGYWKATGTDKII-----STEGQRVGIKKALVFYIGKAPKG 133

Query: 130 VKTNWIMHEYRLAENPKNLNHTKMRPKDSSMRLDDWVLCRIYRK 173
            KTNWIMHEYRL E  +         ++ S +LDDWVLCRIY+K
Sbjct: 134 TKTNWIMHEYRLIEPSR---------RNGSTKLDDWVLCRIYKK 168


>pdb|3ULX|A Chain A, Crystal Structural Of The Conserved Domain Of Rice
           Stress-Responsive Nac1
          Length = 174

 Score =  217 bits (552), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 104/168 (61%), Positives = 124/168 (73%), Gaps = 9/168 (5%)

Query: 8   ESALPPGFRFHPTDEELILHYLKKKVASMPFPVSIIADVDIYKFDPWDLPAKAAFGEKEW 67
           E  LPPGFRFHPTD+EL+ HYL +K A    PV IIA+VD+YKFDPWDLP +A FG +EW
Sbjct: 12  ELNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPERALFGAREW 71

Query: 68  YFFSPRDRKYPNGARPNRAAASGYWKATGTDKIILATSVGAHQENIGVKKALVFYKGRPP 127
           YFF+PRDRKYPNG+RPNRAA +GYWKATG DK      V      +G+KKALVFY G+ P
Sbjct: 72  YFFTPRDRKYPNGSRPNRAAGNGYWKATGADK-----PVAPRGRTLGIKKALVFYAGKAP 126

Query: 128 KGVKTNWIMHEYRLAENPKNLNHTKMRPKDSSMRLDDWVLCRIYRKSH 175
           +GVKT+WIMHEYRLA+  +     K      S+RLDDWVLCR+Y K +
Sbjct: 127 RGVKTDWIMHEYRLADAGRAAAGAKK----GSLRLDDWVLCRLYNKKN 170


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.317    0.133    0.412 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,189,271
Number of Sequences: 62578
Number of extensions: 440572
Number of successful extensions: 702
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 693
Number of HSP's gapped (non-prelim): 10
length of query: 368
length of database: 14,973,337
effective HSP length: 100
effective length of query: 268
effective length of database: 8,715,537
effective search space: 2335763916
effective search space used: 2335763916
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)