Query 017665
Match_columns 368
No_of_seqs 221 out of 971
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 03:00:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017665.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017665hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ulx_A Stress-induced transcri 100.0 1.5E-58 5.1E-63 418.1 14.6 160 8-176 12-171 (174)
2 1ut7_A No apical meristem prot 100.0 6.4E-58 2.2E-62 412.9 14.5 155 8-176 14-168 (171)
3 1cmb_A Met APO-repressor; DNA- 27.9 56 0.0019 26.4 3.8 39 18-60 50-88 (104)
4 1ldd_A APC2WHB, anaphase promo 19.6 54 0.0019 25.3 2.2 27 12-39 37-64 (74)
5 2c4b_A Barnase mcoeeti fusion; 16.6 84 0.0029 27.3 2.9 62 20-95 4-73 (143)
6 4dox_A Coat protein; all helix 15.2 74 0.0025 29.5 2.3 29 5-33 148-177 (226)
7 3nr5_A MAF1, repressor of RNA 8.8 64 0.0022 28.5 -0.4 12 43-54 119-130 (164)
8 1f6k_A N-acetylneuraminate lya 8.7 1.3E+02 0.0045 27.9 1.8 18 11-29 106-123 (293)
9 3dz1_A Dihydrodipicolinate syn 8.7 1.4E+02 0.0048 28.1 2.0 17 11-29 109-125 (313)
10 2ehh_A DHDPS, dihydrodipicolin 8.6 1.4E+02 0.0046 27.8 1.8 28 11-40 102-129 (294)
No 1
>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} SCOP: b.143.1.1
Probab=100.00 E-value=1.5e-58 Score=418.11 Aligned_cols=160 Identities=64% Similarity=1.248 Sum_probs=135.7
Q ss_pred CCCCCCCceeCCCHHHHHHHHHHHhHhCCCCCcceeeeccCCCCCCCCccccccCCCceEEEeccCCCCCCCCCCCcccC
Q 017665 8 ESALPPGFRFHPTDEELILHYLKKKVASMPFPVSIIADVDIYKFDPWDLPAKAAFGEKEWYFFSPRDRKYPNGARPNRAA 87 (368)
Q Consensus 8 ~~~LPpGfRF~PTDEELI~~YL~~Ki~g~plp~~iI~evDVY~~dPWdLP~k~~~ge~eWYFFspr~rKy~nG~R~nRat 87 (368)
++.|||||||||||||||.|||++|+.|.+++..+|++||||++|||+||+.+..|+++|||||+|++||++|.|++|+|
T Consensus 12 ~~~LPpGfRF~PTDeELV~~YL~~K~~g~~~~~~~I~evDvy~~~Pw~Lp~~~~~g~~ewYFFs~r~~ky~~g~R~nR~t 91 (174)
T 3ulx_A 12 ELNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPERALFGAREWYFFTPRDRKYPNGSRPNRAA 91 (174)
T ss_dssp TTTCCTTCCCCCCHHHHHHHTHHHHHHTCCCSSSCCEECCGGGSCGGGSGGGCSSCSSEEEEEEECCC-----CCSCEEE
T ss_pred ccCCCCcceeCCCHHHHHHHHHHHHhcCCCCCcCeeeecccccCCchhhhhhhccCCceEEEEeccccccCCCCCceeec
Confidence 45899999999999999999999999999999999999999999999999999889999999999999999999999999
Q ss_pred CCCeEEeeccceeEEecccCCceeeEEEEEEEEEeeCCCCCCCccCeEEEEEEeCCCCCCcCCCCCCCCCCccCCCceEE
Q 017665 88 ASGYWKATGTDKIILATSVGAHQENIGVKKALVFYKGRPPKGVKTNWIMHEYRLAENPKNLNHTKMRPKDSSMRLDDWVL 167 (368)
Q Consensus 88 g~GyWKatG~dk~I~~~~~GG~g~~VG~KKtLvFY~Gr~pkG~KT~WvMhEYrL~~~~~~~~~~~~~~~~~~~~~dd~VL 167 (368)
++||||+||+++.|... +.+||+||+|+||.|++|+|.||+|+||||+|........ ......+++++|||
T Consensus 92 ~~G~WkatG~dk~I~~~-----g~~vG~KktLvFy~g~~p~g~kT~WvMhEY~L~~~~~~~~----~~~~~~~~~~~wVl 162 (174)
T 3ulx_A 92 GNGYWKATGADKPVAPR-----GRTLGIKKALVFYAGKAPRGVKTDWIMHEYRLADAGRAAA----GAKKGSLRLDDWVL 162 (174)
T ss_dssp TTEEEEECSCCEEECCS-----SSCCEEEEEEEEEESSTTSCEEEEEEEEEEEECSCC---------------CCSSEEE
T ss_pred CCceEccCCCCcEEeeC-----CcEEEEEEEEEEecCCCCCCCcCCeEEEEEEeCCCCCccc----ccccCCCCCCCEEE
Confidence 99999999999999763 5899999999999999999999999999999998632110 01122356789999
Q ss_pred EEEEEcCCC
Q 017665 168 CRIYRKSHV 176 (368)
Q Consensus 168 CRIykK~~~ 176 (368)
||||+|++.
T Consensus 163 Crvf~K~~~ 171 (174)
T 3ulx_A 163 CRLYNKKNE 171 (174)
T ss_dssp EEEEESCC-
T ss_pred EEEEEcCCC
Confidence 999999763
No 2
>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A
Probab=100.00 E-value=6.4e-58 Score=412.85 Aligned_cols=155 Identities=67% Similarity=1.269 Sum_probs=131.8
Q ss_pred CCCCCCCceeCCCHHHHHHHHHHHhHhCCCCCcceeeeccCCCCCCCCccccccCCCceEEEeccCCCCCCCCCCCcccC
Q 017665 8 ESALPPGFRFHPTDEELILHYLKKKVASMPFPVSIIADVDIYKFDPWDLPAKAAFGEKEWYFFSPRDRKYPNGARPNRAA 87 (368)
Q Consensus 8 ~~~LPpGfRF~PTDEELI~~YL~~Ki~g~plp~~iI~evDVY~~dPWdLP~k~~~ge~eWYFFspr~rKy~nG~R~nRat 87 (368)
+..|||||||||||||||.|||++|+.|.+++..+|++||||++|||+||+++..|+++||||++|++||++|.|++|+|
T Consensus 14 ~~~lPpGfRF~PTDeELv~~YL~~K~~g~~~~~~~I~e~Diy~~~Pw~Lp~~~~~g~~ewyFFs~r~~k~~~g~R~~R~t 93 (171)
T 1ut7_A 14 QLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKEWYFFSPRDRKYPNGSRPNRVA 93 (171)
T ss_dssp SSCCCTTEEECCCHHHHHHHTHHHHHTTCCCSSCCSEECCGGGSCGGGHHHHSSSCSSEEEEEEECCC-------CCEEE
T ss_pred ccCCCCcceeCCChHHHHHHHHHHHhcCCCCCCCeEeecccccCChhHhhchhhcCCccEEEEeccccccCCCCcccccC
Confidence 46899999999999999999999999999999999999999999999999999889999999999999999999999999
Q ss_pred CCCeEEeeccceeEEecccCCceeeEEEEEEEEEeeCCCCCCCccCeEEEEEEeCCCCCCcCCCCCCCCCCccCCCceEE
Q 017665 88 ASGYWKATGTDKIILATSVGAHQENIGVKKALVFYKGRPPKGVKTNWIMHEYRLAENPKNLNHTKMRPKDSSMRLDDWVL 167 (368)
Q Consensus 88 g~GyWKatG~dk~I~~~~~GG~g~~VG~KKtLvFY~Gr~pkG~KT~WvMhEYrL~~~~~~~~~~~~~~~~~~~~~dd~VL 167 (368)
++||||+||+++.|... +.+||+||+|+||+|++|+|.||+|+||||+|..... .......++|||
T Consensus 94 ~~G~Wk~tG~~k~I~~~-----~~~vG~KktLvFy~g~~p~g~kT~WvMhEY~l~~~~~---------~~~~~~~~~~Vl 159 (171)
T 1ut7_A 94 GSGYWKATGTDKIISTE-----GQRVGIKKALVFYIGKAPKGTKTNWIMHEYRLIEPSR---------RNGSTKLDDWVL 159 (171)
T ss_dssp TTEEEEEEEEEEEEEET-----TEEEEEEEEEEEEESSTTSCEEEEEEEEEEEECCCC-----------------CCEEE
T ss_pred CCCEEeccCCCceEEec-----CcEEEEEEEEEEEcCcCCCCCcCCeEEEEEEcCCCcc---------ccCcccCCCEEE
Confidence 99999999999999874 4899999999999999999999999999999998621 112245689999
Q ss_pred EEEEEcCCC
Q 017665 168 CRIYRKSHV 176 (368)
Q Consensus 168 CRIykK~~~ 176 (368)
||||+|+..
T Consensus 160 Crv~~k~~~ 168 (171)
T 1ut7_A 160 CRIYKKQSS 168 (171)
T ss_dssp EEEEECC--
T ss_pred EEEEEcCCC
Confidence 999999864
No 3
>1cmb_A Met APO-repressor; DNA-binding regulatory protein; 1.80A {Escherichia coli} SCOP: a.43.1.5 PDB: 1cma_A 1cmc_A* 1mjl_A* 1mj2_A 1mjk_A* 1mjm_A 1mjo_A* 1mjp_A 1mjq_A*
Probab=27.95 E-value=56 Score=26.44 Aligned_cols=39 Identities=26% Similarity=0.415 Sum_probs=32.8
Q ss_pred CCCHHHHHHHHHHHhHhCCCCCcceeeeccCCCCCCCCccccc
Q 017665 18 HPTDEELILHYLKKKVASMPFPVSIIADVDIYKFDPWDLPAKA 60 (368)
Q Consensus 18 ~PTDEELI~~YL~~Ki~g~plp~~iI~evDVY~~dPWdLP~k~ 60 (368)
|-|.-||++.-...-..|+|+|.+ .|+-+..|.++|+.+
T Consensus 50 HATNSELLCEAFLHA~TGQPLP~D----~Dl~Kd~~d~iP~~a 88 (104)
T 1cmb_A 50 HATNSELLCEAFLHAFTGQPLPDD----ADLRKERSDEIPEAA 88 (104)
T ss_dssp CCSHHHHHHHHHHHHHHCCCCCCG----GGGBTTSCSCSCHHH
T ss_pred hcccHHHHHHHHHHHhcCCCCCCc----hhhhhcCCccchHHH
Confidence 568889988666678899999974 799999999999865
No 4
>1ldd_A APC2WHB, anaphase promoting complex; ubiquitin, ligase, ubiquitination, ring finger, winged-helix; 2.00A {Saccharomyces cerevisiae} SCOP: a.4.5.34
Probab=19.64 E-value=54 Score=25.28 Aligned_cols=27 Identities=19% Similarity=0.267 Sum_probs=22.4
Q ss_pred CCCceeCC-CHHHHHHHHHHHhHhCCCCC
Q 017665 12 PPGFRFHP-TDEELILHYLKKKVASMPFP 39 (368)
Q Consensus 12 PpGfRF~P-TDEELI~~YL~~Ki~g~plp 39 (368)
|.|+.|.. |++||-. ||-+++....+.
T Consensus 37 ~~~~~~~~it~~eL~~-fL~~~v~e~kL~ 64 (74)
T 1ldd_A 37 PKDWGYNRITLQQLEG-YLNTLADEGRLK 64 (74)
T ss_dssp CGGGCCTTCCHHHHHH-HHHHHHHTTSEE
T ss_pred CCCCCCCcCCHHHHHH-HHHHHHhCCeEE
Confidence 67899998 9999985 999999876543
No 5
>2c4b_A Barnase mcoeeti fusion; squash inhibitor, hybrid microprotein, fusion protein, ribonuclease, endonuclease, hydrolase, nuclease; HET: 2PE MES; 1.3A {Bacillus amyloliquefaciens} SCOP: d.1.1.2 g.3.2.1 PDB: 1b3s_A 2kf3_A 2kf4_A 2kf5_A 2kf6_A 1a2p_A 1b27_A 1b2x_A 1bgs_A 1bni_A 1bnj_A 1bnr_A 1brn_L* 1brs_A 1fw7_A 1x1u_A 1x1w_A 1x1x_A 1yvs_A 3kch_A ...
Probab=16.64 E-value=84 Score=27.25 Aligned_cols=62 Identities=21% Similarity=0.406 Sum_probs=37.6
Q ss_pred CHHHHHHHHHHHhHhCCCCCcceee--eccCCCCCCCC------ccccccCCCceEEEeccCCCCCCCCCCCcccCCCCe
Q 017665 20 TDEELILHYLKKKVASMPFPVSIIA--DVDIYKFDPWD------LPAKAAFGEKEWYFFSPRDRKYPNGARPNRAAASGY 91 (368)
Q Consensus 20 TDEELI~~YL~~Ki~g~plp~~iI~--evDVY~~dPWd------LP~k~~~ge~eWYFFspr~rKy~nG~R~nRatg~Gy 91 (368)
|+.+-|..||.. -..||..+|. +++--+.+|-+ +|++...|+ -|.-+++.-|. ..+||
T Consensus 4 t~~~~V~~yl~~---~~~LP~~yiTK~eA~~~GW~p~kgnL~~v~pgk~igG~----vF~NrE~~LP~-------~~~~~ 69 (143)
T 2c4b_A 4 NTFDGVADYLQT---YHKLPDNYITKSEAQALGWVASKGNLADVAPGKSIGGD----IFSNREGKLPG-------KSGRT 69 (143)
T ss_dssp CSHHHHHHHHHH---HSSCCTTEECHHHHHHTTCCGGGTCHHHHSTTCEEEEE----EECCTTCCSCC-------CTTCC
T ss_pred cchhHHHHHHHH---hCcCCcccccHHHHHHcCCCCCcCcHhhcCCCcccCCc----eEecCCCcCCC-------CCCCE
Confidence 556667788876 4567887775 46777788854 455543332 26655544443 24678
Q ss_pred EEee
Q 017665 92 WKAT 95 (368)
Q Consensus 92 WKat 95 (368)
|+.-
T Consensus 70 y~E~ 73 (143)
T 2c4b_A 70 WREA 73 (143)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9654
No 6
>4dox_A Coat protein; all helix capsid protein, virus capsid structure, viral PROT; 2.70A {Papaya mosaic virus}
Probab=15.21 E-value=74 Score=29.52 Aligned_cols=29 Identities=38% Similarity=0.571 Sum_probs=19.0
Q ss_pred CCCCC-CCCCCceeCCCHHHHHHHHHHHhH
Q 017665 5 KNPES-ALPPGFRFHPTDEELILHYLKKKV 33 (368)
Q Consensus 5 ~~p~~-~LPpGfRF~PTDEELI~~YL~~Ki 33 (368)
.+|.. .-+-|..+.||++|+|.|=..+++
T Consensus 148 ~n~AAl~P~~GLiR~PT~~E~iA~~t~K~i 177 (226)
T 4dox_A 148 ENPAAMQPPSGLTRSPTQEERIANATNKQV 177 (226)
T ss_dssp TCTTSCCCTTCCSSCCCHHHHHHHHTC---
T ss_pred CCccccCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 34543 334489999999999998665544
No 7
>3nr5_A MAF1, repressor of RNA polymerase III transcription MAF; RNA-POL III transcriptional repressor, RNA-POL III; 1.55A {Homo sapiens}
Probab=8.75 E-value=64 Score=28.53 Aligned_cols=12 Identities=42% Similarity=0.949 Sum_probs=10.6
Q ss_pred eeeccCCCCCCC
Q 017665 43 IADVDIYKFDPW 54 (368)
Q Consensus 43 I~evDVY~~dPW 54 (368)
+.++|||.+.|.
T Consensus 119 l~dC~IYsY~Pd 130 (164)
T 3nr5_A 119 LAECDIYSYNPD 130 (164)
T ss_dssp GGGCEEEEECCC
T ss_pred ccCCeEEEEcCC
Confidence 567999999998
No 8
>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A*
Probab=8.70 E-value=1.3e+02 Score=27.88 Aligned_cols=18 Identities=17% Similarity=0.093 Sum_probs=13.8
Q ss_pred CCCCceeCCCHHHHHHHHH
Q 017665 11 LPPGFRFHPTDEELILHYL 29 (368)
Q Consensus 11 LPpGfRF~PTDEELI~~YL 29 (368)
+||- -|.||+++|+.||-
T Consensus 106 ~~P~-y~~~~~~~l~~~f~ 123 (293)
T 1f6k_A 106 VTPF-YYKFSFPEIKHYYD 123 (293)
T ss_dssp ECCC-SSCCCHHHHHHHHH
T ss_pred CCCC-CCCCCHHHHHHHHH
Confidence 4554 48899999998764
No 9
>3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=8.67 E-value=1.4e+02 Score=28.08 Aligned_cols=17 Identities=29% Similarity=0.411 Sum_probs=12.8
Q ss_pred CCCCceeCCCHHHHHHHHH
Q 017665 11 LPPGFRFHPTDEELILHYL 29 (368)
Q Consensus 11 LPpGfRF~PTDEELI~~YL 29 (368)
+||- |.||+++|+.||-
T Consensus 109 ~~P~--~~~s~~~l~~~f~ 125 (313)
T 3dz1_A 109 APPP--SLRTDEQITTYFR 125 (313)
T ss_dssp CCCT--TCCSHHHHHHHHH
T ss_pred CCCC--CCCCHHHHHHHHH
Confidence 5663 5599999998764
No 10
>2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus}
Probab=8.55 E-value=1.4e+02 Score=27.82 Aligned_cols=28 Identities=21% Similarity=0.472 Sum_probs=17.6
Q ss_pred CCCCceeCCCHHHHHHHHHHHhHhCCCCCc
Q 017665 11 LPPGFRFHPTDEELILHYLKKKVASMPFPV 40 (368)
Q Consensus 11 LPpGfRF~PTDEELI~~YL~~Ki~g~plp~ 40 (368)
+|| |-|.||+++|+.||- .-+...++|.
T Consensus 102 ~~P-~y~~~s~~~l~~~f~-~va~a~~lPi 129 (294)
T 2ehh_A 102 VVP-YYNKPTQRGLYEHFK-TVAQEVDIPI 129 (294)
T ss_dssp ECC-CSSCCCHHHHHHHHH-HHHHHCCSCE
T ss_pred CCC-CCCCCCHHHHHHHHH-HHHHhcCCCE
Confidence 455 448899999999874 3233335553
Done!