BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017667
(368 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3HQI|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
pdb|3HQI|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
pdb|3HU6|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
pdb|3HU6|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
Length = 312
Score = 146 bits (368), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 97/321 (30%), Positives = 152/321 (47%), Gaps = 33/321 (10%)
Query: 27 QTINGSHHFTIKGYSLSKGIGIGKHIASDNFSVGG---YQWAIYFYPDGKNPEDNSTYVS 83
+ + S+ +TI +S + +G+ I S FS G +W + P G + E
Sbjct: 3 KVVKFSYMWTINNFSFCRE-EMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSL 61
Query: 84 VFIALASEGTDVRALFELTLVDQSGKGKHKVHSHFDRSLESGPYTLKYRGSMWGYKRFFR 143
+ ++ ++VRA F+ ++++ G+ +++ES +G WG+K+F R
Sbjct: 62 YLLLVSCPKSEVRAKFKFSILNAKGEET--------KAMESQRAYRFVQGKDWGFKKFIR 113
Query: 144 RAML--ETSDFLKDDCLKINCTVGVVVSAIDCS---RLHSIQVPESDIGDHFGMLLENEE 198
R L E + L DD L + C V VV +++ S ++ ++VPE + D G L EN
Sbjct: 114 RGFLLDEANGLLPDDKLTLFCEVSVVQDSVNISGQNTMNMVKVPECRLADELGGLWENSR 173
Query: 199 SSDITFNVVGEKFHAHKLVLAARSPVFETEFLDAMEED-NHEIVVTDMEPKVFKALLHFI 257
+D V G++F AHK +LAARSPVF F MEE + + + D+EP+VFK ++ FI
Sbjct: 174 FTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFI 233
Query: 258 YKDTLIEDGEXXXXXXXXXXXXXDTXXXXXXXXXXXYVLPRLRLMCESVLCKVISVNSVA 317
Y D Y L RL++MCE LC +SV + A
Sbjct: 234 Y---------------TGKAPNLDKMADDLLAAADKYALERLKVMCEDALCSNLSVENAA 278
Query: 318 HTLALADRHCAMDLKSVCLKF 338
L LAD H A LK+ + F
Sbjct: 279 EILILADLHSADQLKTQAVDF 299
>pdb|4EOZ|A Chain A, Crystal Structure Of The Spop Btb Domain Complexed With
The Cul3 N- Terminal Domain
pdb|4EOZ|C Chain C, Crystal Structure Of The Spop Btb Domain Complexed With
The Cul3 N- Terminal Domain
Length = 145
Score = 97.8 bits (242), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 57/156 (36%), Positives = 76/156 (48%), Gaps = 16/156 (10%)
Query: 179 IQVPESDIGDHFGMLLENEESSDITFNVVGEKFHAHKLVLAARSPVFETEFLDAMEED-N 237
++VPE + D G L EN +D V G++F AHK +LAARSPVF F MEE
Sbjct: 5 VKVPECRLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKK 64
Query: 238 HEIVVTDMEPKVFKALLHFIYKDTLIEDGEXXXXXXXXXXXXXDTXXXXXXXXXXXYVLP 297
+ + + D+EP+VFK ++ FIY D Y L
Sbjct: 65 NRVEINDVEPEVFKEMMCFIY---------------TGKAPNLDKMADDLLAAADKYALE 109
Query: 298 RLRLMCESVLCKVISVNSVAHTLALADRHCAMDLKS 333
RL++MCE LC +SV + A L LAD H A LK+
Sbjct: 110 RLKVMCEDALCSNLSVENAAEILILADLHSADQLKT 145
>pdb|3HTM|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopbtb3-Box
pdb|3HTM|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopbtb3-Box
pdb|3HTM|C Chain C, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopbtb3-Box
pdb|3HTM|D Chain D, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopbtb3-Box
Length = 172
Score = 90.5 bits (223), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 57/163 (34%), Positives = 76/163 (46%), Gaps = 16/163 (9%)
Query: 177 HSIQVPESDIGDHFGMLLENEESSDITFNVVGEKFHAHKLVLAARSPVFETEFLDAMEED 236
+ ++VPE + D G L EN +D V G++F AHK +LAARSPVF F EE
Sbjct: 12 NXVKVPECRLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAXFEHEXEES 71
Query: 237 -NHEIVVTDMEPKVFKALLHFIYKDTLIEDGEXXXXXXXXXXXXXDTXXXXXXXXXXXYV 295
+ + + D+EP+VFK FIY D Y
Sbjct: 72 KKNRVEINDVEPEVFKEXXCFIY---------------TGKAPNLDKXADDLLAAADKYA 116
Query: 296 LPRLRLMCESVLCKVISVNSVAHTLALADRHCAMDLKSVCLKF 338
L RL++ CE LC +SV + A L LAD H A LK+ + F
Sbjct: 117 LERLKVXCEDALCSNLSVENAAEILILADLHSADQLKTQAVDF 159
>pdb|2CR2|A Chain A, Solution Structure Of N-Terminal Domain Of Speckle-Type
Poz Protein
Length = 159
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 69/148 (46%), Gaps = 14/148 (9%)
Query: 32 SHHFTIKGYSLSKGIGIGKHIASDNFSVGG---YQWAIYFYPDGKNPEDNSTYVSVFIAL 88
S+ +TI +S + +G+ I S FS G +W + P G + E + +
Sbjct: 13 SYMWTINNFSFCREE-MGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLLLV 71
Query: 89 ASEGTDVRALFELTLVDQSGKGKHKVHSHFDRSLESGPYTLKYRGSMWGYKRFFRRAML- 147
+ ++VRA F+ ++++ G +++ES +G WG+K+F RR L
Sbjct: 72 SCPKSEVRAKFKFSILNAKG--------EETKAMESQRAYRFVQGKDWGFKKFIRRDFLL 123
Query: 148 -ETSDFLKDDCLKINCTVGVVVSAIDCS 174
E + L DD L + C V VV +++ S
Sbjct: 124 DEANGLLPDDKLTLFCEVSVVQDSVNIS 151
>pdb|3HQH|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopmathx-Macroh2asbcpep1
pdb|3HQL|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin
Ligases:spopmathx-Pucsbc1_pep2
pdb|3HQL|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin
Ligases:spopmathx-Pucsbc1_pep2
pdb|3HQM|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopmathx-Cisbc2
pdb|3HQM|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopmathx-Cisbc2
pdb|3HSV|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopmathx-Macroh2asbcpep2
pdb|3HSV|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopmathx-Macroh2asbcpep2
Length = 145
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 65/141 (46%), Gaps = 14/141 (9%)
Query: 32 SHHFTIKGYSLSKGIGIGKHIASDNFSVGG---YQWAIYFYPDGKNPEDNSTYVSVFIAL 88
S+ +TI +S + +G+ I S FS G +W + P G + E + +
Sbjct: 12 SYMWTINNFSFCREE-MGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLLLV 70
Query: 89 ASEGTDVRALFELTLVDQSGKGKHKVHSHFDRSLESGPYTLKYRGSMWGYKRFFRRAML- 147
+ ++VRA F+ ++++ G +++ES +G WG+K+F RR L
Sbjct: 71 SCPKSEVRAKFKFSILNAKG--------EETKAMESQRAYRFVQGKDWGFKKFIRRGFLL 122
Query: 148 -ETSDFLKDDCLKINCTVGVV 167
E + L DD L + C V VV
Sbjct: 123 DEANGLLPDDKLTLFCEVSVV 143
>pdb|3IVB|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Architectures Of Btb-Cul3 Ubiquitin Ligases: Spopmath-
Macroh2asbcpep1
pdb|3IVQ|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopmath-Cisbc2
pdb|3IVQ|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopmath-Cisbc2
pdb|3IVV|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopmath-Pucsbc1_pep1
Length = 145
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 68/146 (46%), Gaps = 14/146 (9%)
Query: 27 QTINGSHHFTIKGYSLSKGIGIGKHIASDNFSVGG---YQWAIYFYPDGKNPEDNSTYVS 83
+ + S+ +TI +S + +G+ I S FS G +W + P G + E
Sbjct: 7 KVVKFSYMWTINNFSFCRE-EMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSL 65
Query: 84 VFIALASEGTDVRALFELTLVDQSGKGKHKVHSHFDRSLESGPYTLKYRGSMWGYKRFFR 143
+ ++ ++VRA F+ ++++ G+ +++ES +G WG+K+F R
Sbjct: 66 YLLLVSCPKSEVRAKFKFSILNAKGEET--------KAMESQRAYRFVQGKDWGFKKFIR 117
Query: 144 RAML--ETSDFLKDDCLKINCTVGVV 167
R L E + L DD L + C V VV
Sbjct: 118 RDFLLDEANGLLPDDKLTLFCEVSVV 143
>pdb|2VKP|A Chain A, Crystal Structure Of Btb Domain From Btbd6
pdb|2VKP|B Chain B, Crystal Structure Of Btb Domain From Btbd6
Length = 109
Score = 42.0 bits (97), Expect = 6e-04, Method: Composition-based stats.
Identities = 28/74 (37%), Positives = 35/74 (47%), Gaps = 6/74 (8%)
Query: 194 LENEESSDITFNVVG-----EKFHAHKLVLAARSPVFETEFLDAMEEDNHEIVVTDMEPK 248
NE +D+ F VVG AHK VLA S VF F + E EI + D+EP
Sbjct: 3 FNNELXADVHF-VVGPPGATRTVPAHKYVLAVGSSVFYAXFYGDLAEVKSEIHIPDVEPA 61
Query: 249 VFKALLHFIYKDTL 262
F LL + Y D +
Sbjct: 62 AFLILLKYXYSDEI 75
>pdb|1BUO|A Chain A, Btb Domain From Plzf
Length = 121
Score = 39.3 bits (90), Expect = 0.003, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
Query: 201 DITFNVVGEKFHAHKLVLAARSPVFETEFLDAMEEDNHEIVVTDMEPKVFKALLHFIYKD 260
D+ V ++FHAH+ VLA S +FE F ++ + + PK F+ +L + Y
Sbjct: 30 DVVIMVDSQEFHAHRTVLACTSKMFEILF----HRNSQHYTLDFLSPKTFQQILEYAYTA 85
Query: 261 TLIEDGE 267
TL E
Sbjct: 86 TLQAKAE 92
>pdb|1CS3|A Chain A, Structure Of BtbPOZ TRANSCRIPTION REPRESSION DOMAIN FROM
PROMELOCYTIC Leukemia Zinc Finger Oncoprotein
Length = 116
Score = 39.3 bits (90), Expect = 0.003, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
Query: 201 DITFNVVGEKFHAHKLVLAARSPVFETEFLDAMEEDNHEIVVTDMEPKVFKALLHFIYKD 260
D+ V ++FHAH+ VLA S +FE F ++ + + PK F+ +L + Y
Sbjct: 29 DVVIMVDSQEFHAHRTVLACTSKMFEILF----HRNSQHYTLDFLSPKTFQQILEYAYTA 84
Query: 261 TLIEDGE 267
TL E
Sbjct: 85 TLQAKAE 91
>pdb|1R28|A Chain A, Crystal Structure Of The B-Cell Lymphoma 6 (Bcl6) Btb
Domain To 2.2 Angstrom
pdb|1R28|B Chain B, Crystal Structure Of The B-Cell Lymphoma 6 (Bcl6) Btb
Domain To 2.2 Angstrom
pdb|1R29|A Chain A, Crystal Structure Of The B-cell Lymphoma 6 (bcl6) Btb
Domain To 1.3 Angstrom
pdb|1R2B|A Chain A, Crystal Structure Of The Bcl6 Btb Domain Complexed With A
Smrt Co-Repressor Peptide
pdb|1R2B|B Chain B, Crystal Structure Of The Bcl6 Btb Domain Complexed With A
Smrt Co-Repressor Peptide
pdb|3BIM|A Chain A, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|B Chain B, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|C Chain C, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|D Chain D, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|E Chain E, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|F Chain F, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|G Chain G, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|H Chain H, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3LBZ|A Chain A, Crystal Structure Of The Bcl6 Btb Domain Complexed With
The Molecule Inhibitor 79-6
pdb|3LBZ|B Chain B, Crystal Structure Of The Bcl6 Btb Domain Complexed With
The Molecule Inhibitor 79-6
Length = 127
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 3/81 (3%)
Query: 184 SDIGDHFGMLLENEESSDITFNVVGEKFHAHKLVLAARSPVFETEFLDAMEEDNHEIVVT 243
SD+ + L + +D+ V E+F AHK VL A S +F + F D ++ N ++
Sbjct: 14 SDVLLNLNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKR-NLSVINL 72
Query: 244 DME--PKVFKALLHFIYKDTL 262
D E P+ F LL F+Y L
Sbjct: 73 DPEINPEGFNILLDFMYTSRL 93
>pdb|3E4U|A Chain A, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|B Chain B, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|C Chain C, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|D Chain D, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|E Chain E, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|F Chain F, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
Length = 130
Score = 35.8 bits (81), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 3/81 (3%)
Query: 184 SDIGDHFGMLLENEESSDITFNVVGEKFHAHKLVLAARSPVFETEFLDAMEEDNHEIVVT 243
SD+ + L + +D+ V E+F AHK VL A S +F + F D + + N ++
Sbjct: 17 SDVLLNLNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQL-KCNLSVINL 75
Query: 244 DME--PKVFKALLHFIYKDTL 262
D E P+ F LL F+Y L
Sbjct: 76 DPEINPEGFCILLDFMYTSRL 96
>pdb|2IHC|A Chain A, Crystal Structure Of The Bric-A-Brac (Btb) Domain Of Human
Bach1
pdb|2IHC|B Chain B, Crystal Structure Of The Bric-A-Brac (Btb) Domain Of Human
Bach1
pdb|2IHC|C Chain C, Crystal Structure Of The Bric-A-Brac (Btb) Domain Of Human
Bach1
pdb|2IHC|D Chain D, Crystal Structure Of The Bric-A-Brac (Btb) Domain Of Human
Bach1
Length = 124
Score = 35.4 bits (80), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 35/67 (52%)
Query: 201 DITFNVVGEKFHAHKLVLAARSPVFETEFLDAMEEDNHEIVVTDMEPKVFKALLHFIYKD 260
D+T V G++F AH+ VLAA S F + + + + + + ++ K F+ L+ F Y
Sbjct: 31 DVTIFVEGQRFRAHRSVLAACSSYFHSRIVGQADGELNITLPEEVTVKGFEPLIQFAYTA 90
Query: 261 TLIEDGE 267
LI E
Sbjct: 91 KLILSKE 97
>pdb|2Z8H|A Chain A, Structure Of Mouse Bach1 Btb Domain
Length = 138
Score = 35.0 bits (79), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 33/63 (52%)
Query: 201 DITFNVVGEKFHAHKLVLAARSPVFETEFLDAMEEDNHEIVVTDMEPKVFKALLHFIYKD 260
D+T V G++F AH+ VLAA S F + + + + + ++ K F+ L+ F Y
Sbjct: 38 DVTVLVEGQRFRAHRSVLAACSSYFHSRIVGQTDAELTVTLPEEVTVKGFEPLIQFAYTA 97
Query: 261 TLI 263
LI
Sbjct: 98 KLI 100
>pdb|3GA1|A Chain A, Crystal Structure Of The Human Nac1 Poz Domain
pdb|3GA1|B Chain B, Crystal Structure Of The Human Nac1 Poz Domain
Length = 129
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 44/98 (44%), Gaps = 17/98 (17%)
Query: 176 LHSIQVPESDIGDHFGMLLE--NEES-----SDITFNVVGEKFHAHKLVLAARSPVFETE 228
L S Q + +I + +LE NE+ D++ V G F AH+ VLAA S F
Sbjct: 3 LGSAQTLQMEIPNFGNSILECLNEQRLQGLYCDVSVVVKGHAFKAHRAVLAASSSYFRDL 62
Query: 229 FLDAMEEDNHEIVVTDM----EPKVFKALLHFIYKDTL 262
F +N V ++ +P+ F+ +L F Y L
Sbjct: 63 F------NNSRSAVVELPAAVQPQSFQQILSFCYTGRL 94
>pdb|1LB4|A Chain A, Traf6 Apo Structure
Length = 159
Score = 31.6 bits (70), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 29/128 (22%), Positives = 51/128 (39%), Gaps = 18/128 (14%)
Query: 52 IASDNFSVG--GYQWAIYFYPDGKNPEDNSTYVSVFIALASEGTD------VRALFELTL 103
I S F G GY+ + + + + Y+S+F+ D + LT+
Sbjct: 28 IHSPGFYTGKPGYKLCMRLHLQLPTAQRCANYISLFVHTMQGEYDSHLPWPFQGTIRLTI 87
Query: 104 VDQSGKGKHKVHSHFDRSLESGPYTLKYRGSM-------WGYKRFFRRAMLETSDFLKDD 156
+DQS + V + + +++ P L ++ +GY F L F+KDD
Sbjct: 88 LDQS---EAPVRQNHEEIMDAKPELLAFQRPTIPRNPKGFGYVTFMHLEALRQRTFIKDD 144
Query: 157 CLKINCTV 164
L + C V
Sbjct: 145 TLLVRCEV 152
>pdb|1LB5|A Chain A, Traf6-Rank Complex
pdb|1LB6|A Chain A, Traf6-Cd40 Complex
Length = 160
Score = 31.6 bits (70), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 29/128 (22%), Positives = 51/128 (39%), Gaps = 18/128 (14%)
Query: 52 IASDNFSVG--GYQWAIYFYPDGKNPEDNSTYVSVFIALASEGTD------VRALFELTL 103
I S F G GY+ + + + + Y+S+F+ D + LT+
Sbjct: 29 IHSPGFYTGKPGYKLCMRLHLQLPTAQRCANYISLFVHTMQGEYDSHLPWPFQGTIRLTI 88
Query: 104 VDQSGKGKHKVHSHFDRSLESGPYTLKYRGSM-------WGYKRFFRRAMLETSDFLKDD 156
+DQS + V + + +++ P L ++ +GY F L F+KDD
Sbjct: 89 LDQS---EAPVRQNHEEIMDAKPELLAFQRPTIPRNPKGFGYVTFMHLEALRQRTFIKDD 145
Query: 157 CLKINCTV 164
L + C V
Sbjct: 146 TLLVRCEV 153
>pdb|3M8V|A Chain A, Crystal Structure Of The Btb Domain From KaisoZBTB33, FORM
II
pdb|3M4T|A Chain A, Crystal Structure Of The Btb Domain From KaisoZBTB33, FORM
I
Length = 124
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Query: 201 DITFNVVGEKFHAHKLVLAARSPVFETEFLDAMEEDNHEIVVTDMEPKVFKALLHFIYKD 260
D+T V KF AHK +L+A S F F A + ++ + ++F +L++IY
Sbjct: 35 DVTVIVEDRKFRAHKNILSASSTYFHQLFSVA----GQVVELSFIRAEIFAEILNYIYSS 90
Query: 261 TLIE 264
++
Sbjct: 91 KIVR 94
>pdb|3OHU|A Chain A, Crystal Structure Of The Human Bach2 Poz Domain, Form I
pdb|3OHU|B Chain B, Crystal Structure Of The Human Bach2 Poz Domain, Form I
pdb|3OHU|C Chain C, Crystal Structure Of The Human Bach2 Poz Domain, Form I
pdb|3OHU|D Chain D, Crystal Structure Of The Human Bach2 Poz Domain, Form I
pdb|3OHU|E Chain E, Crystal Structure Of The Human Bach2 Poz Domain, Form I
pdb|3OHU|F Chain F, Crystal Structure Of The Human Bach2 Poz Domain, Form I
pdb|3OHV|A Chain A, Crystal Structure Of The Human Bach2 Poz Domain, Form Ii
pdb|3OHV|B Chain B, Crystal Structure Of The Human Bach2 Poz Domain, Form Ii
pdb|3OHV|C Chain C, Crystal Structure Of The Human Bach2 Poz Domain, Form Ii
pdb|3OHV|D Chain D, Crystal Structure Of The Human Bach2 Poz Domain, Form Ii
pdb|3OHV|E Chain E, Crystal Structure Of The Human Bach2 Poz Domain, Form Ii
pdb|3OHV|F Chain F, Crystal Structure Of The Human Bach2 Poz Domain, Form Ii
Length = 125
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 31/67 (46%)
Query: 201 DITFNVVGEKFHAHKLVLAARSPVFETEFLDAMEEDNHEIVVTDMEPKVFKALLHFIYKD 260
D+T V ++F AH+ VLAA S F + + D + ++ + F LL F Y
Sbjct: 34 DVTLIVERKEFRAHRAVLAACSEYFWQALVGQTKNDLVVSLPEEVTARGFGPLLQFAYTA 93
Query: 261 TLIEDGE 267
L+ E
Sbjct: 94 KLLLSRE 100
>pdb|3FKC|A Chain A, Crystal Structure Of Human Zinc Finger And Btb Domain
Containing 33
Length = 116
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Query: 201 DITFNVVGEKFHAHKLVLAARSPVFETEFLDAMEEDNHEIVVTDMEPKVFKALLHFIYKD 260
D+T V KF AHK +L+A S F F A + ++ + ++F +L++IY
Sbjct: 33 DVTVIVEDRKFRAHKNILSASSTYFHQLFSVA----GQVVELSFIRAEIFAEILNYIYSS 88
Query: 261 TLIE 264
++
Sbjct: 89 KIVR 92
>pdb|3M52|A Chain A, Crystal Structure Of The Btb Domain From The Miz-1ZBTB17
Transcription Regulator
pdb|3M52|B Chain B, Crystal Structure Of The Btb Domain From The Miz-1ZBTB17
Transcription Regulator
Length = 117
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 19/31 (61%)
Query: 201 DITFNVVGEKFHAHKLVLAARSPVFETEFLD 231
D TF V G F AHK VLAA S F+ F+D
Sbjct: 27 DCTFVVDGVHFKAHKAVLAACSEYFKMLFVD 57
>pdb|2Q81|A Chain A, Crystal Structure Of The Miz-1 BtbPOZ DOMAIN
pdb|2Q81|B Chain B, Crystal Structure Of The Miz-1 BtbPOZ DOMAIN
pdb|2Q81|C Chain C, Crystal Structure Of The Miz-1 BtbPOZ DOMAIN
pdb|2Q81|D Chain D, Crystal Structure Of The Miz-1 BtbPOZ DOMAIN
Length = 119
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 19/31 (61%)
Query: 201 DITFNVVGEKFHAHKLVLAARSPVFETEFLD 231
D TF V G F AHK VLAA S F+ F+D
Sbjct: 29 DCTFVVDGVHFKAHKAVLAACSEYFKMLFVD 59
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.138 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,631,438
Number of Sequences: 62578
Number of extensions: 376218
Number of successful extensions: 831
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 805
Number of HSP's gapped (non-prelim): 25
length of query: 368
length of database: 14,973,337
effective HSP length: 100
effective length of query: 268
effective length of database: 8,715,537
effective search space: 2335763916
effective search space used: 2335763916
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.6 bits)