Query 017667
Match_columns 368
No_of_seqs 303 out of 2397
Neff 9.3
Searched_HMMs 46136
Date Fri Mar 29 02:23:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017667.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017667hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PHA02713 hypothetical protein; 100.0 1.4E-27 3E-32 236.8 15.7 158 183-357 9-169 (557)
2 PHA02790 Kelch-like protein; P 99.9 6.2E-27 1.3E-31 228.8 12.7 155 187-357 10-168 (480)
3 KOG4441 Proteins containing BT 99.9 3.1E-26 6.6E-31 226.4 15.1 161 182-357 19-180 (571)
4 PHA03098 kelch-like protein; P 99.9 6.5E-26 1.4E-30 225.7 15.4 144 196-357 6-151 (534)
5 KOG4350 Uncharacterized conser 99.9 2.2E-26 4.7E-31 206.3 10.1 169 184-364 29-200 (620)
6 cd03774 MATH_SPOP Speckle-type 99.9 2.1E-23 4.6E-28 170.2 14.2 131 28-168 2-138 (139)
7 cd03772 MATH_HAUSP Herpesvirus 99.9 5E-23 1.1E-27 167.5 14.0 126 30-168 2-134 (137)
8 cd03780 MATH_TRAF5 Tumor Necro 99.9 6.7E-23 1.5E-27 167.1 12.3 131 31-165 1-148 (148)
9 cd03777 MATH_TRAF3 Tumor Necro 99.9 1.4E-22 3E-27 171.1 12.9 135 28-166 36-185 (186)
10 cd03775 MATH_Ubp21p Ubiquitin- 99.9 2.5E-22 5.4E-27 162.7 12.5 118 32-165 2-134 (134)
11 cd00270 MATH_TRAF_C Tumor Necr 99.9 1.8E-22 3.9E-27 166.9 10.5 132 31-165 1-149 (149)
12 cd03773 MATH_TRIM37 Tripartite 99.9 3.9E-22 8.4E-27 161.5 12.1 124 30-165 4-130 (132)
13 cd03776 MATH_TRAF6 Tumor Necro 99.9 2.1E-22 4.5E-27 165.8 10.5 131 31-165 1-147 (147)
14 cd03781 MATH_TRAF4 Tumor Necro 99.9 3.8E-22 8.3E-27 165.1 12.1 132 31-165 1-154 (154)
15 cd03771 MATH_Meprin Meprin fam 99.9 5.7E-22 1.2E-26 163.7 12.5 134 30-165 1-167 (167)
16 cd03779 MATH_TRAF1 Tumor Necro 99.9 3.9E-22 8.4E-27 161.8 11.1 130 31-165 1-147 (147)
17 cd03778 MATH_TRAF2 Tumor Necro 99.8 8.4E-20 1.8E-24 149.6 12.0 135 28-165 16-164 (164)
18 cd00121 MATH MATH (meprin and 99.8 3.6E-19 7.8E-24 142.3 13.7 120 31-165 1-126 (126)
19 KOG2075 Topoisomerase TOP1-int 99.8 3.8E-19 8.1E-24 163.6 14.5 173 178-365 93-272 (521)
20 KOG4591 Uncharacterized conser 99.8 7.4E-20 1.6E-24 149.7 8.0 159 183-357 50-211 (280)
21 PF00651 BTB: BTB/POZ domain; 99.8 1.7E-19 3.6E-24 141.4 7.2 106 190-310 1-110 (111)
22 PF00917 MATH: MATH domain; I 99.8 6E-18 1.3E-22 134.2 11.0 113 37-166 1-119 (119)
23 cd03783 MATH_Meprin_Alpha Mepr 99.7 2.1E-17 4.4E-22 134.8 9.7 136 30-165 1-167 (167)
24 KOG4682 Uncharacterized conser 99.7 1.2E-16 2.6E-21 144.0 12.4 146 189-350 59-209 (488)
25 cd03782 MATH_Meprin_Beta Mepri 99.7 2.3E-16 5.1E-21 127.8 10.8 134 30-165 1-167 (167)
26 smart00225 BTB Broad-Complex, 99.7 1.3E-16 2.9E-21 119.3 7.3 89 201-304 1-90 (90)
27 KOG0783 Uncharacterized conser 99.6 4E-16 8.7E-21 151.4 9.5 159 197-365 708-874 (1267)
28 smart00061 MATH meprin and TRA 99.6 2.3E-14 5E-19 108.6 9.2 89 33-142 2-95 (95)
29 KOG1987 Speckle-type POZ prote 99.5 4.3E-13 9.4E-18 123.7 12.5 223 35-348 8-240 (297)
30 COG5077 Ubiquitin carboxyl-ter 99.3 2.7E-12 5.9E-17 124.2 7.2 127 26-169 34-173 (1089)
31 KOG0783 Uncharacterized conser 98.8 1.3E-08 2.8E-13 100.0 8.1 82 181-262 536-634 (1267)
32 KOG0511 Ankyrin repeat protein 98.5 2.3E-07 5E-12 83.9 6.6 131 209-355 301-442 (516)
33 KOG2838 Uncharacterized conser 98.3 7.7E-07 1.7E-11 77.3 4.2 136 184-319 220-396 (401)
34 KOG2716 Polymerase delta-inter 98.3 5.5E-06 1.2E-10 71.7 9.1 95 202-310 7-104 (230)
35 KOG2838 Uncharacterized conser 98.1 1.8E-06 3.9E-11 75.0 2.7 103 182-296 113-218 (401)
36 PF02214 BTB_2: BTB/POZ domain 97.9 1.1E-05 2.4E-10 60.8 3.4 87 202-303 1-94 (94)
37 KOG3473 RNA polymerase II tran 97.8 0.00014 3.1E-09 53.0 8.2 88 202-295 19-111 (112)
38 KOG1863 Ubiquitin carboxyl-ter 97.2 0.00061 1.3E-08 73.2 6.2 168 30-230 26-200 (1093)
39 PF07707 BACK: BTB And C-termi 97.0 0.0011 2.3E-08 50.6 4.3 42 316-357 1-42 (103)
40 smart00512 Skp1 Found in Skp1 96.9 0.0037 8E-08 47.9 6.5 91 202-296 4-104 (104)
41 PF11822 DUF3342: Domain of un 96.8 0.0018 3.9E-08 58.7 5.1 110 209-333 14-136 (317)
42 KOG0511 Ankyrin repeat protein 96.7 0.0025 5.5E-08 58.4 4.7 102 188-305 135-240 (516)
43 KOG2714 SETA binding protein S 96.6 0.0057 1.2E-07 57.1 6.7 90 201-306 12-110 (465)
44 smart00875 BACK BTB And C-term 96.6 0.0039 8.5E-08 47.0 4.6 42 316-357 1-42 (101)
45 KOG1665 AFH1-interacting prote 96.5 0.0086 1.9E-07 51.1 6.3 92 201-306 10-106 (302)
46 PF03931 Skp1_POZ: Skp1 family 96.0 0.029 6.3E-07 38.4 6.1 56 202-259 3-59 (62)
47 KOG0297 TNF receptor-associate 96.0 0.0042 9E-08 59.3 2.3 79 27-106 276-365 (391)
48 KOG1724 SCF ubiquitin ligase, 95.9 0.015 3.3E-07 47.9 5.1 103 207-313 13-129 (162)
49 KOG2715 Uncharacterized conser 94.5 0.17 3.8E-06 41.2 6.9 96 200-310 21-121 (210)
50 KOG1778 CREB binding protein/P 93.8 0.051 1.1E-06 49.9 3.0 140 201-354 28-169 (319)
51 COG5201 SKP1 SCF ubiquitin lig 90.7 1.8 3.8E-05 33.8 7.5 114 201-316 3-127 (158)
52 PF01466 Skp1: Skp1 family, di 90.6 0.39 8.5E-06 34.5 3.8 49 279-327 11-62 (78)
53 KOG2723 Uncharacterized conser 83.1 4.4 9.5E-05 35.3 6.5 95 198-306 6-105 (221)
54 PF11822 DUF3342: Domain of un 80.5 1.2 2.5E-05 40.9 2.2 48 310-357 71-119 (317)
55 PF00651 BTB: BTB/POZ domain; 75.0 4.8 0.0001 30.4 4.0 31 312-342 80-110 (111)
56 PF07707 BACK: BTB And C-termi 69.0 14 0.00031 27.4 5.4 59 285-343 2-74 (103)
57 KOG2075 Topoisomerase TOP1-int 59.8 6.1 0.00013 38.1 2.0 32 311-342 185-216 (521)
58 KOG3840 Uncharaterized conserv 53.6 29 0.00062 31.6 5.1 67 197-263 93-165 (438)
59 PHA03098 kelch-like protein; P 51.5 24 0.00052 35.2 5.0 33 310-342 72-104 (534)
60 PF09593 Pathogen_betaC1: Beta 48.8 49 0.0011 25.7 5.0 54 207-262 20-77 (117)
61 PHA02713 hypothetical protein; 42.1 50 0.0011 33.4 5.5 33 310-342 90-122 (557)
62 KOG4682 Uncharacterized conser 41.0 21 0.00045 33.9 2.3 33 278-310 169-201 (488)
63 PF06887 DUF1265: Protein of u 40.2 39 0.00084 21.4 2.7 35 313-347 10-45 (48)
64 PF14733 ACDC: AP2-coincident 35.6 74 0.0016 23.4 4.2 65 284-364 4-68 (91)
65 PHA02790 Kelch-like protein; P 34.4 39 0.00084 33.4 3.3 32 310-341 87-118 (480)
66 smart00875 BACK BTB And C-term 33.6 41 0.00088 24.5 2.6 25 286-310 3-27 (101)
67 COG3033 TnaA Tryptophanase [Am 29.6 41 0.00088 31.7 2.3 61 244-304 168-228 (471)
68 PF01466 Skp1: Skp1 family, di 27.4 1.4E+02 0.003 21.2 4.3 34 310-343 10-43 (78)
69 KOG4441 Proteins containing BT 23.9 1.9E+02 0.0042 29.3 6.2 32 310-341 101-132 (571)
70 PF07079 DUF1347: Protein of u 22.5 6.6E+02 0.014 24.8 8.9 87 282-368 359-453 (549)
No 1
>PHA02713 hypothetical protein; Provisional
Probab=99.95 E-value=1.4e-27 Score=236.77 Aligned_cols=158 Identities=17% Similarity=0.233 Sum_probs=149.9
Q ss_pred CCcHHHHHHHhhcCCCCCcEEEEec-CeEEEeeeeehhccCHHHHHhhccccccc--cceEEEcCCCHHHHHHHhhhhhc
Q 017667 183 ESDIGDHFGMLLENEESSDITFNVV-GEKFHAHKLVLAARSPVFETEFLDAMEED--NHEIVVTDMEPKVFKALLHFIYK 259 (368)
Q Consensus 183 ~~~l~~~l~~l~~~~~~~Dv~l~v~-~~~~~~hk~iLa~~S~~F~~~~~~~~~e~--~~~i~l~~~~~~~f~~~L~~iY~ 259 (368)
...+.+.|++|+.++.++||+|.|+ |++|+|||.|||++|+||++||.++++|. +.+|.|+++++++|+.+|+|+||
T Consensus 9 ~~~~l~~l~~lr~~~~l~DV~L~v~~~~~f~~Hr~vLaa~S~YF~amF~~~~~e~~~~~~v~l~~v~~~~~~~ll~y~Yt 88 (557)
T PHA02713 9 NRRVVSNISNLLDDDILCDVIITIGDGEEIKAHKTILAAGSKYFRTLFTTPMIIRDLVTRVNLQMFDKDAVKNIVQYLYN 88 (557)
T ss_pred hHHHHHHHHHHHhCCCCCCEEEEeCCCCEEeehHHHHhhcCHHHHHHhcCCchhhccCceEEeccCCHHHHHHHHHHhcC
Confidence 4667899999999999999999997 89999999999999999999999999975 78999999999999999999999
Q ss_pred CCCCCCccCCCCCCCCCCCCcHHHHHHHHHHhcccChhHHHHHHHHHHhccCChhHHHHHHHHHHhcCChHHHHHHHHHH
Q 017667 260 DTLIEDGECSASSSSCVPSVSDTLEAKLLAAAEKYVLPRLRLMCESVLCKVISVNSVAHTLALADRHCAMDLKSVCLKFA 339 (368)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~A~~~~~~~l~~~ce~~l~~~i~~~n~~~~l~~a~~~~~~~L~~~~~~~i 339 (368)
+.+ +.+++++||.+|++|+++.|++.|+++|.+.++.+||+.++.+|..+.+..|.+.|.+||
T Consensus 89 ~~i-----------------~~~nv~~ll~aA~~lqi~~l~~~C~~~l~~~l~~~NCl~i~~~~~~~~~~~L~~~a~~~i 151 (557)
T PHA02713 89 RHI-----------------SSMNVIDVLKCADYLLIDDLVTDCESYIKDYTNHDTCIYMYHRLYEMSHIPIVKYIKRML 151 (557)
T ss_pred CCC-----------------CHHHHHHHHHHHHHHCHHHHHHHHHHHHHhhCCccchHHHHHHHHhccchHHHHHHHHHH
Confidence 864 578999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhHHHHhccCCCccchh
Q 017667 340 AENLVGMSFQFDLFVLSF 357 (368)
Q Consensus 340 ~~~~~~v~~~~~~~~ls~ 357 (368)
.+||.++.++++|.+|+.
T Consensus 152 ~~~f~~v~~~~ef~~L~~ 169 (557)
T PHA02713 152 MSNIPTLITTDAFKKTVF 169 (557)
T ss_pred HHHHHHHhCChhhhhCCH
Confidence 999999999999999875
No 2
>PHA02790 Kelch-like protein; Provisional
Probab=99.94 E-value=6.2e-27 Score=228.82 Aligned_cols=155 Identities=12% Similarity=0.155 Sum_probs=142.2
Q ss_pred HHHHHHhhcCCCCCcEEEEecCeEEEeeeeehhccCHHHHHhhccccccccceEEE--cCCCHHHHHHHhhhhhcCCCCC
Q 017667 187 GDHFGMLLENEESSDITFNVVGEKFHAHKLVLAARSPVFETEFLDAMEEDNHEIVV--TDMEPKVFKALLHFIYKDTLIE 264 (368)
Q Consensus 187 ~~~l~~l~~~~~~~Dv~l~v~~~~~~~hk~iLa~~S~~F~~~~~~~~~e~~~~i~l--~~~~~~~f~~~L~~iY~~~~~~ 264 (368)
.+++..+..++.++||++.+|+ +|+|||.|||+.||||++||.++++|+..+|.+ .++++++++.+|+|+||+++.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~-~~~~HR~VLAa~S~YFraMF~~~~~Es~~~v~~~~~~v~~~~l~~lldy~YTg~l~- 87 (480)
T PHA02790 10 CKNILALSMTKKFKTIIEAIGG-NIIVNSTILKKLSPYFRTHLRQKYTKNKDPVTRVCLDLDIHSLTSIVIYSYTGKVY- 87 (480)
T ss_pred hhhHHHHHhhhhhceEEEEcCc-EEeeehhhhhhcCHHHHHHhcCCccccccceEEEecCcCHHHHHHHHHhheeeeEE-
Confidence 3456677788999999887655 999999999999999999999999998334554 499999999999999999995
Q ss_pred CccCCCCCCCCCCCCcHHHHHHHHHHhcccChhHHHHHHHHHHhccCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhHH
Q 017667 265 DGECSASSSSCVPSVSDTLEAKLLAAAEKYVLPRLRLMCESVLCKVISVNSVAHTLALADRHCAMDLKSVCLKFAAENLV 344 (368)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~ll~~A~~~~~~~l~~~ce~~l~~~i~~~n~~~~l~~a~~~~~~~L~~~~~~~i~~~~~ 344 (368)
++.+++++||.+|++++++.+++.|+++|.+.|+++||+.++.+|+.|++.+|++.+.+||.+||.
T Consensus 88 --------------it~~nV~~ll~aA~~Lqi~~v~~~C~~fL~~~l~~~NCl~i~~~A~~y~~~~L~~~a~~fi~~nF~ 153 (480)
T PHA02790 88 --------------IDSHNVVNLLRASILTSVEFIIYTCINFILRDFRKEYCVECYMMGIEYGLSNLLCHTKDFIAKHFL 153 (480)
T ss_pred --------------EecccHHHHHHHHHHhChHHHHHHHHHHHHhhCCcchHHHHHHHHHHhCHHHHHHHHHHHHHHhHH
Confidence 899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcc--CCCccchh
Q 017667 345 GMSFQ--FDLFVLSF 357 (368)
Q Consensus 345 ~v~~~--~~~~~ls~ 357 (368)
++.++ ++|..|+.
T Consensus 154 ~v~~~~~~ef~~L~~ 168 (480)
T PHA02790 154 ELEDDIIDNFDYLSM 168 (480)
T ss_pred HHhcccchhhhhCCH
Confidence 99987 89999885
No 3
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=99.94 E-value=3.1e-26 Score=226.44 Aligned_cols=161 Identities=24% Similarity=0.356 Sum_probs=155.9
Q ss_pred CCCcHHHHHHHhhcCCCCCcEEEEecCeEEEeeeeehhccCHHHHHhhccccccc-cceEEEcCCCHHHHHHHhhhhhcC
Q 017667 182 PESDIGDHFGMLLENEESSDITFNVVGEKFHAHKLVLAARSPVFETEFLDAMEED-NHEIVVTDMEPKVFKALLHFIYKD 260 (368)
Q Consensus 182 ~~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~~hk~iLa~~S~~F~~~~~~~~~e~-~~~i~l~~~~~~~f~~~L~~iY~~ 260 (368)
+...+.+.|+.+++.+.++||++.+++++|+|||.|||+.||||++||.++++|+ +.+|.|.++++++++.+|+|+||+
T Consensus 19 h~~~~l~~l~~lr~~~~lcDv~L~v~~~~~~aHR~VLAa~S~YFraMFt~~l~e~~~~~i~l~~v~~~~l~~ll~y~Yt~ 98 (571)
T KOG4441|consen 19 HSKFLLQGLNELREEGLLCDVTLLVGDREFPAHRVVLAACSPYFRAMFTSGLKESKQKEINLEGVDPETLELLLDYAYTG 98 (571)
T ss_pred HHHHHHHHHHHHHHhCCCceEEEEECCeeechHHHHHHhccHHHHHHhcCCcccccceEEEEecCCHHHHHHHHHHhhcc
Confidence 3456788899999999999999999999999999999999999999999999999 999999999999999999999999
Q ss_pred CCCCCccCCCCCCCCCCCCcHHHHHHHHHHhcccChhHHHHHHHHHHhccCChhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 017667 261 TLIEDGECSASSSSCVPSVSDTLEAKLLAAAEKYVLPRLRLMCESVLCKVISVNSVAHTLALADRHCAMDLKSVCLKFAA 340 (368)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~A~~~~~~~l~~~ce~~l~~~i~~~n~~~~l~~a~~~~~~~L~~~~~~~i~ 340 (368)
.+. ++.+++++||.+|++|+++.+.+.|.++|.+.++++||+.+..+|+.|++.+|.+.+..|+.
T Consensus 99 ~i~---------------i~~~nVq~ll~aA~~lQi~~v~~~C~~fL~~~l~~~Nclgi~~~a~~~~~~~L~~~a~~~i~ 163 (571)
T KOG4441|consen 99 KLE---------------ISEDNVQELLEAASLLQIPEVVDACCEFLESQLDPSNCLGIRRFAELHSCTELLEVADEYIL 163 (571)
T ss_pred eEE---------------echHhHHHHHHHHHHhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 994 89999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHHHHhccCCCccchh
Q 017667 341 ENLVGMSFQFDLFVLSF 357 (368)
Q Consensus 341 ~~~~~v~~~~~~~~ls~ 357 (368)
.||.++.++++|.+|+.
T Consensus 164 ~~F~~v~~~eefl~L~~ 180 (571)
T KOG4441|consen 164 QHFAEVSKTEEFLLLSL 180 (571)
T ss_pred HHHHHHhccHHhhCCCH
Confidence 99999999999999987
No 4
>PHA03098 kelch-like protein; Provisional
Probab=99.93 E-value=6.5e-26 Score=225.66 Aligned_cols=144 Identities=18% Similarity=0.270 Sum_probs=138.7
Q ss_pred CCCCCcEEEEe--cCeEEEeeeeehhccCHHHHHhhccccccccceEEEcCCCHHHHHHHhhhhhcCCCCCCccCCCCCC
Q 017667 196 NEESSDITFNV--VGEKFHAHKLVLAARSPVFETEFLDAMEEDNHEIVVTDMEPKVFKALLHFIYKDTLIEDGECSASSS 273 (368)
Q Consensus 196 ~~~~~Dv~l~v--~~~~~~~hk~iLa~~S~~F~~~~~~~~~e~~~~i~l~~~~~~~f~~~L~~iY~~~~~~~~~~~~~~~ 273 (368)
++.++||+|.+ +|++|+|||.||+++|+||++||.++++ ..+|.|++ ++++|+.+|+|+|||++.
T Consensus 6 ~~~~~Dv~l~~~~~~~~~~~Hk~vLaa~S~yF~~mf~~~~~--~~~i~l~~-~~~~~~~~l~y~Ytg~~~---------- 72 (534)
T PHA03098 6 LQKFCDESIIIVNGGGIIKVHKIILSSSSEYFKKMFKNNFK--ENEINLNI-DYDSFNEVIKYIYTGKIN---------- 72 (534)
T ss_pred cCCCCCEEEEEEcCCEEEEeHHHHHHhhhHHHHHHHhCCCC--CceEEecC-CHHHHHHHHHHhcCCceE----------
Confidence 78899999998 9999999999999999999999999887 57899999 999999999999999994
Q ss_pred CCCCCCcHHHHHHHHHHhcccChhHHHHHHHHHHhccCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhHHHHhccCCCc
Q 017667 274 SCVPSVSDTLEAKLLAAAEKYVLPRLRLMCESVLCKVISVNSVAHTLALADRHCAMDLKSVCLKFAAENLVGMSFQFDLF 353 (368)
Q Consensus 274 ~~~~~~~~~~~~~ll~~A~~~~~~~l~~~ce~~l~~~i~~~n~~~~l~~a~~~~~~~L~~~~~~~i~~~~~~v~~~~~~~ 353 (368)
++.+++.+||.+|++|+++.|+.+|+++|.+.++.+||+.++.+|+.|++..|++.|.+||..||.++.++++|.
T Consensus 73 -----i~~~~~~~ll~~A~~l~~~~l~~~C~~~l~~~l~~~nc~~~~~~a~~~~~~~L~~~~~~~i~~nf~~v~~~~~f~ 147 (534)
T PHA03098 73 -----ITSNNVKDILSIANYLIIDFLINLCINYIIKIIDDNNCIDIYRFSFFYGCKKLYSAAYNYIRNNIELIYNDPDFI 147 (534)
T ss_pred -----EcHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHhcCchhh
Confidence 888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchh
Q 017667 354 VLSF 357 (368)
Q Consensus 354 ~ls~ 357 (368)
+|+.
T Consensus 148 ~l~~ 151 (534)
T PHA03098 148 YLSK 151 (534)
T ss_pred cCCH
Confidence 9986
No 5
>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.93 E-value=2.2e-26 Score=206.29 Aligned_cols=169 Identities=26% Similarity=0.390 Sum_probs=158.4
Q ss_pred CcHHHHHHHhhcCCCCCcEEEEecCeEEEeeeeehhccCHHHHHhhccccccc-cceEEEcCCCHHHHHHHhhhhhcCCC
Q 017667 184 SDIGDHFGMLLENEESSDITFNVVGEKFHAHKLVLAARSPVFETEFLDAMEED-NHEIVVTDMEPKVFKALLHFIYKDTL 262 (368)
Q Consensus 184 ~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~~hk~iLa~~S~~F~~~~~~~~~e~-~~~i~l~~~~~~~f~~~L~~iY~~~~ 262 (368)
..+++++..++.+++++||+|+|++++|+|||.|||+||.||++|++|+|+|+ +..|+|++...++|+.+|+|||+|++
T Consensus 29 ~~fS~~~~~l~~~e~y~DVtfvve~~rfpAHRvILAaRs~yFRAlLYgGm~Es~q~~ipLq~t~~eAF~~lLrYiYtg~~ 108 (620)
T KOG4350|consen 29 NNFSQSFDELFTSEDYSDVTFVVEDTRFPAHRVILAARSSYFRALLYGGMQESHQQLIPLQETNSEAFRALLRYIYTGKI 108 (620)
T ss_pred cchhHHHHHHhhcCcccceEEEEeccccchhhhhHHHHHHHHHHHHhhhhhhhhhcccccccccHHHHHHHHHHHhhcce
Confidence 45678999999999999999999999999999999999999999999999999 99999999999999999999999999
Q ss_pred CCCccCCCCCCCCCCCCcHHHHHHHHHHhcccChhHHHHHHHHHHhccCChhHHHHHHHHHHhcCChHHHHHHHHHHHHh
Q 017667 263 IEDGECSASSSSCVPSVSDTLEAKLLAAAEKYVLPRLRLMCESVLCKVISVNSVAHTLALADRHCAMDLKSVCLKFAAEN 342 (368)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~A~~~~~~~l~~~ce~~l~~~i~~~n~~~~l~~a~~~~~~~L~~~~~~~i~~~ 342 (368)
.... ...+...+.|.+|++|++..|.....++|++.+..+|++.++..|..|++.+|.+.|+.|+-+|
T Consensus 109 ~l~~------------~~ed~lld~LslAh~Ygf~~Le~aiSeYl~~iL~~~NvCmifdaA~ly~l~~Lt~~C~mfmDrn 176 (620)
T KOG4350|consen 109 DLAG------------VEEDILLDYLSLAHRYGFIQLETAISEYLKEILKNENVCMIFDAAYLYQLTDLTDYCMMFMDRN 176 (620)
T ss_pred eccc------------chHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHcccceeeeeeHHHHhcchHHHHHHHHHHhcC
Confidence 7542 6778899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccCCCccchh--HHHHHHh
Q 017667 343 LVGMSFQFDLFVLSF--LFHFYCR 364 (368)
Q Consensus 343 ~~~v~~~~~~~~ls~--l~~~~~~ 364 (368)
..+++.++.|..||. |..++.+
T Consensus 177 A~~lL~~~sFn~LSk~sL~e~l~R 200 (620)
T KOG4350|consen 177 ADQLLEDPSFNRLSKDSLKELLAR 200 (620)
T ss_pred HHhhhcCcchhhhhHHHHHHHHhh
Confidence 999999999999975 5555544
No 6
>cd03774 MATH_SPOP Speckle-type POZ protein (SPOP) family, MATH domain; composed of proteins with similarity to human SPOP. SPOP was isolated as a novel antigen recognized by serum from a scleroderma patient, whose overexpression in COS cells results in a discrete speckled pattern in the nuclei. It contains an N-terminal MATH domain and a C-terminal BTB (also called POZ) domain. Together with Cul3, SPOP constitutes an ubiquitin E3 ligase which is able to ubiquitinate the PcG protein BMI1, the variant histone macroH2A1 and the death domain-associated protein Daxx. Therefore, SPOP may be involved in the regulation of these proteins and may play a role in transcriptional regulation, apoptosis and X-chromosome inactivation. Cul3 binds to the BTB domain of SPOP whereas Daxx and the macroH2A1 nonhistone region have been shown to bind to the MATH domain. Both MATH and BTB domains are necessary for the nuclear speckled accumulation of SPOP. There are many proteins, mostly uncharacterized, conta
Probab=99.91 E-value=2.1e-23 Score=170.22 Aligned_cols=131 Identities=30% Similarity=0.635 Sum_probs=106.2
Q ss_pred eeeeEEEEEEccccCcccCCCCCceeeceeecCC---eEEEEEEEcCCCCCCCCCCcEEEEEEecc-CCcceEEEEEEEE
Q 017667 28 TINGSHHFTIKGYSLSKGIGIGKHIASDNFSVGG---YQWAIYFYPDGKNPEDNSTYVSVFIALAS-EGTDVRALFELTL 103 (368)
Q Consensus 28 ~~~~~~~w~I~~fs~~~~~~~g~~~~S~~f~~gG---~~W~l~~~p~G~~~~~~~~~lsl~L~~~~-~~w~v~a~~~~~l 103 (368)
+...+|+|+|+|||.+++ ..|+++.|+.|.+|| ++|+|++||+|...+ +.+|+|+||.+.+ ..+.+.|+|+|.|
T Consensus 2 ~~~~~~~w~I~~fS~~~~-~~~~~i~S~~F~vgg~~~~~W~l~~yP~G~~~~-~~~~iSlyL~l~~~~~~~v~a~f~~~l 79 (139)
T cd03774 2 VVKFCYMWTISNFSFCRE-EMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEE-SKDYLSLYLLLVSCPKSEVRAKFKFSI 79 (139)
T ss_pred ceEEEEEEEECCchhhhh-cCCCEEECCCeecCCcCCceEEEEEeCCCCCCC-CCCeEEEEEEEccCCCCcEEEEEEEEE
Confidence 567899999999998875 568899999999998 499999999998643 5789999999866 4578999999999
Q ss_pred eeCCCCCcceeeeccccccccCCceecccCccccccceeeccccc--cCcCcCCCcEEEEEEeeeee
Q 017667 104 VDQSGKGKHKVHSHFDRSLESGPYTLKYRGSMWGYKRFFRRAMLE--TSDFLKDDCLKINCTVGVVV 168 (368)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~G~~~f~~~~~L~--~~~yl~~d~l~i~~~v~i~~ 168 (368)
+|+.+....... ....+.|. ....|||.+|+++++|. .+||+.||+++|+|+|.|+.
T Consensus 80 ~n~~~~~~~~~~-------~~~~~~f~-~~~~wG~~~fi~~~~L~~~~~g~l~dD~l~I~c~I~V~~ 138 (139)
T cd03774 80 LNAKGEETKAME-------SQRAYRFV-QGKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQ 138 (139)
T ss_pred EecCCCeeeeec-------ccCcEeCC-CCCccCHHHeeeHHHhhhhhcccccCCEEEEEEEEEEEc
Confidence 999875432110 11124454 35789999999999994 57899999999999999864
No 7
>cd03772 MATH_HAUSP Herpesvirus-associated ubiquitin-specific protease (HAUSP, also known as USP7) family, N-terminal MATH (TRAF-like) domain; composed of proteins similar to human HAUSP, an enzyme that specifically catalyzes the deubiquitylation of p53 and MDM2, hence playing an important role in the p53-MDM2 pathway. It contains an N-terminal TRAF-like domain and a C-terminal catalytic protease (C19 family) domain. The tumor suppressor p53 protein is a transcription factor that responds to many cellular stress signals and is regulated primarily through ubiquitylation and subsequent degradation. MDM2 is a RING-finger E3 ubiquitin ligase that promotes p53 ubiquitinylation. p53 and MDM2 bind to the same site in the N-terminal TRAF-like domain of HAUSP in a mutually exclusive manner. HAUSP also interacts with the Epstein-Barr nuclear antigen 1 (EBNA1) protein of the Epstein-Barr virus (EBV), which efficiently immortalizes infected cells predisposing the host to a variety of cancers. EBNA1
Probab=99.90 E-value=5e-23 Score=167.53 Aligned_cols=126 Identities=15% Similarity=0.270 Sum_probs=101.4
Q ss_pred eeEEEEEEccccCcccCCCCCceeeceeecCCeEEEEEEEcCCCCCC-CCCCcEEEEEEecc----CCcceEEEEEEEEe
Q 017667 30 NGSHHFTIKGYSLSKGIGIGKHIASDNFSVGGYQWAIYFYPDGKNPE-DNSTYVSVFIALAS----EGTDVRALFELTLV 104 (368)
Q Consensus 30 ~~~~~w~I~~fs~~~~~~~g~~~~S~~f~~gG~~W~l~~~p~G~~~~-~~~~~lsl~L~~~~----~~w~v~a~~~~~l~ 104 (368)
.++|+|+|+|||.+ ++.++|+.|.+||++|+|++||+|...+ +..+++||||.|.+ ..|.+.|.|+|.|+
T Consensus 2 ~~~~~~~I~~~S~l-----~e~~~S~~f~vgG~~W~i~~~P~g~~~~~~~~~~lsvyL~~~~~~~~~~w~i~a~~~~~l~ 76 (137)
T cd03772 2 EATFSFTVERFSRL-----SESVLSPPCFVRNLPWKIMVMPRNYPDRNPHQKSVGFFLQCNAESDSTSWSCHAQAVLRII 76 (137)
T ss_pred CcEEEEEECCcccC-----CCcEECCCEEECCcceEEEEEeCCCCCCCCCCCeEEEEEeeCCcCCCCCCeEEEEEEEEEE
Confidence 47899999999987 3689999999999999999999996532 23589999999965 35899999999999
Q ss_pred eCCCCCcceeeeccccccccCCceecccCccccccceeeccccc--cCcCcCCCcEEEEEEeeeee
Q 017667 105 DQSGKGKHKVHSHFDRSLESGPYTLKYRGSMWGYKRFFRRAMLE--TSDFLKDDCLKINCTVGVVV 168 (368)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~G~~~f~~~~~L~--~~~yl~~d~l~i~~~v~i~~ 168 (368)
|+++...... . ...+.|......|||++|++|++|. .+|||.||+++|+|+|.|..
T Consensus 77 ~~~~~~~~~~-~-------~~~~~f~~~~~~~G~~~fi~~~~L~~~~sgyl~~D~l~Ie~~V~~~~ 134 (137)
T cd03772 77 NYKDDEPSFS-R-------RISHLFFSKENDWGFSNFMTWSEVTDPEKGFIEDDTITLEVYVQADA 134 (137)
T ss_pred cCCCCcccEE-E-------eeeeEEcCCCCCccchheeEHHHhcCCCCCcEECCEEEEEEEEEeeC
Confidence 9985322111 0 1124565556789999999999994 58999999999999998764
No 8
>cd03780 MATH_TRAF5 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF5 subfamily, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF5 was identified as an activator of nuclear factor-kappaB and a regulator of lymphotoxin-beta receptor and CD40 signaling. Its interaction with CD40 is indirect, involving hetero-oligomerization with TRAF3. In addition, TRAF5 has been shown to associate with other TNFRs including CD27, CD30, OX40 and GITR (glucocorticoid-induced TNFR). It plays a role in modulating Th2 immune responses (driven by OX40 costimulation) and T-cell activation (triggered by GITR). It is also involved in osteoclastogenesis. TRAF5 contains a RING finger domain, five zinc finger domains, and a TRAF domain. The TRAF domain can be divided into a more dive
Probab=99.89 E-value=6.7e-23 Score=167.08 Aligned_cols=131 Identities=26% Similarity=0.410 Sum_probs=102.8
Q ss_pred eEEEEEEccccCccc-CCCCC--ceeecee--ecCCeEEEEEEEcCCCCCCCCCCcEEEEEEeccC------CcceEEEE
Q 017667 31 GSHHFTIKGYSLSKG-IGIGK--HIASDNF--SVGGYQWAIYFYPDGKNPEDNSTYVSVFIALASE------GTDVRALF 99 (368)
Q Consensus 31 ~~~~w~I~~fs~~~~-~~~g~--~~~S~~f--~~gG~~W~l~~~p~G~~~~~~~~~lsl~L~~~~~------~w~v~a~~ 99 (368)
|.+.|+|.+|+.+++ ++.|+ ++.|++| .++||+|+|++||||.+.+ .++|||+||.+..+ .|++.+++
T Consensus 1 g~~vwkI~~ys~~~~~~~~g~~~~i~S~~Fyt~~~Gy~w~i~~ypnG~~~~-~~~~iSv~l~l~~g~~D~~l~wp~~~~~ 79 (148)
T cd03780 1 GKLIWKVTDYKMKKKEAVDGHTVSIFSQPFYTSRCGYRLCARAYLNGDGSG-KGTHLSLYFVVMRGEFDSLLQWPFRQRV 79 (148)
T ss_pred CEEEEEECCHHHHHHhhcCCCccEEECCCcccCCCCeeEEEEEEcCCCCCC-CCCEEEEEEEEecCccccccCcceEEEE
Confidence 579999999999874 56777 8999999 8999999999999998743 67899999999875 69999999
Q ss_pred EEEEeeCCCCCcceeeeccccccccCCceeccc----CccccccceeeccccccC--cCcCCCcEEEEEEee
Q 017667 100 ELTLVDQSGKGKHKVHSHFDRSLESGPYTLKYR----GSMWGYKRFFRRAMLETS--DFLKDDCLKINCTVG 165 (368)
Q Consensus 100 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~----~~~~G~~~f~~~~~L~~~--~yl~~d~l~i~~~v~ 165 (368)
+|.|+||.+++.+..... .. ......|... +..||+++|+++++|+.+ +|+.||+++|+|.|.
T Consensus 80 tfsLlDq~~~~~~~~~~~-~~--~~~~~~F~rp~~~~n~~~G~~~Fi~~~~Le~s~~~ylkdD~~~Ik~~v~ 148 (148)
T cd03780 80 TLMLLDQSGKKNHIMETF-KA--DPNSSSFKRPDGEMNIASGCPRFVAHSVLENAKNTYIKDDTLFLKVAVD 148 (148)
T ss_pred EEEEECCCCCCCCcceee-ec--CCccccccCCCCCCCCCcChhheeEHHHhhcccCCcCcCCEEEEEEEEC
Confidence 999999986544211111 00 0011234211 347999999999999864 999999999999874
No 9
>cd03777 MATH_TRAF3 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF3 subfamily, TRAF domain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF3 was first described as a molecule that binds the cytoplasmic tail of CD40. However, it is not required for CD40 signaling. More recently, TRAF3 has been identified as a key regulator of type I interferon (IFN) production and the mammalian innate antiviral immunity. It mediates IFN responses in Toll-like receptor (TLR)-dependent as well as TLR-independent viral recognition pathways. It is also a key element in immunological homeostasis through its regulation of the anti-inflammatory cytokine interleukin-10. TRAF3 contains a RING finger domain, five zinc finger domains, and a TRAF domain. The TRAF domain can be divided into a more divergent N-terminal al
Probab=99.89 E-value=1.4e-22 Score=171.12 Aligned_cols=135 Identities=24% Similarity=0.386 Sum_probs=104.9
Q ss_pred eeeeEEEEEEccccCccc-CCCCC--ceeeceeecC--CeEEEEEEEcCCCCCCCCCCcEEEEEEeccC------CcceE
Q 017667 28 TINGSHHFTIKGYSLSKG-IGIGK--HIASDNFSVG--GYQWAIYFYPDGKNPEDNSTYVSVFIALASE------GTDVR 96 (368)
Q Consensus 28 ~~~~~~~w~I~~fs~~~~-~~~g~--~~~S~~f~~g--G~~W~l~~~p~G~~~~~~~~~lsl~L~~~~~------~w~v~ 96 (368)
...|.|.|+|.+|+.+++ .+.|+ ++.||+|++| ||+|+|++||||.+.+ .++|+|+||.+.++ .|++.
T Consensus 36 ~~~G~hvwkI~~yS~~~~~~~~g~~~~i~S~~Fyvg~~GY~w~i~~ypnG~g~~-~~~~iSvyl~L~~ge~D~~L~WP~~ 114 (186)
T cd03777 36 SYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMG-KGTHLSLFFVIMRGEYDALLPWPFK 114 (186)
T ss_pred ccceEEEEEECChhHHHHhhccCCCcEEECCCeEeCCCCeeEEEEEEcCCCCCC-CCCEEEEEEEEecCCcccccCCcee
Confidence 346999999999998874 46666 8999999999 9999999999998744 67899999999774 59999
Q ss_pred EEEEEEEeeCCCCCcceeeeccccccccCCceec-cc---CccccccceeeccccccCcCcCCCcEEEEEEeee
Q 017667 97 ALFELTLVDQSGKGKHKVHSHFDRSLESGPYTLK-YR---GSMWGYKRFFRRAMLETSDFLKDDCLKINCTVGV 166 (368)
Q Consensus 97 a~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~-~~---~~~~G~~~f~~~~~L~~~~yl~~d~l~i~~~v~i 166 (368)
++++|.|+||.+..... ...+..... ...|. +. +..||++.|+++++|+.++|++||+++|+|.|..
T Consensus 115 ~~~tfsLlDQ~~~~~~~-~~~~~p~p~--~~~F~rp~~~~n~~~G~~~Fi~~~~Le~~~ylkdD~l~Irv~v~~ 185 (186)
T cd03777 115 QKVTLMLMDQGSSRRHL-GDAFKPDPN--SSSFKKPTGEMNIASGCPVFVAQTVLENGTYIKDDTIFIKVIVDT 185 (186)
T ss_pred EEEEEEEEcCCCccccc-cceeccCCc--cccccCCccCCCCCCCchheeEHHHhccCCcEeCCEEEEEEEEec
Confidence 99999999997632211 111100000 12232 12 4479999999999999899999999999998863
No 10
>cd03775 MATH_Ubp21p Ubiquitin-specific protease 21 (Ubp21p) family, MATH domain; composed of fungal proteins with similarity to Ubp21p of fission yeast. Ubp21p is a deubiquitinating enzyme that may be involved in the regulation of the protein kinase Prp4p, which controls the formation of active spliceosomes. Members of this family are similar to human HAUSP (Herpesvirus-associated ubiquitin-specific protease) in that they contain an N-terminal MATH domain and a C-terminal catalytic protease (C19 family) domain. HAUSP is also an ubiquitin-specific protease that specifically catalyzes the deubiquitylation of p53 and MDM2. The MATH domain of HAUSP contains the binding site for p53 and MDM2. Similarly, the MATH domain of members in this family may be involved in substrate binding.
Probab=99.88 E-value=2.5e-22 Score=162.67 Aligned_cols=118 Identities=26% Similarity=0.485 Sum_probs=96.4
Q ss_pred EEEEEEccccCcccCCCCCceeeceeecCCeEEEEEEEcCCCCCCCCCCcEEEEEEecc---------CCcceEEEEEEE
Q 017667 32 SHHFTIKGYSLSKGIGIGKHIASDNFSVGGYQWAIYFYPDGKNPEDNSTYVSVFIALAS---------EGTDVRALFELT 102 (368)
Q Consensus 32 ~~~w~I~~fs~~~~~~~g~~~~S~~f~~gG~~W~l~~~p~G~~~~~~~~~lsl~L~~~~---------~~w~v~a~~~~~ 102 (368)
+|+|+|+|||.+ ++.+.|++|.+||++|+|.+||+|+.. .+|+|+||.+.+ .+|.+.|.|+|.
T Consensus 2 ~f~w~I~~fS~~-----~~~~~S~~F~vGG~~W~l~~yP~G~~~---~~~iSlyL~l~~~~~~~~~~~~~~~v~a~f~~~ 73 (134)
T cd03775 2 SFTWRIKNWSEL-----EKKVHSPKFKCGGFEWRILLFPQGNSQ---TGGVSIYLEPHPEEEEKAPLDEDWSVCAQFALV 73 (134)
T ss_pred cEEEEECCcccC-----CcceeCCCEEECCeeEEEEEeCCCCCC---CCeEEEEEEecCcccccccCCCCCeEEEEEEEE
Confidence 589999999985 478999999999999999999999762 689999999853 358899999999
Q ss_pred EeeCCCCCcceeeeccccccccCCceecccCccccccceeeccccc------cCcCcCCCcEEEEEEee
Q 017667 103 LVDQSGKGKHKVHSHFDRSLESGPYTLKYRGSMWGYKRFFRRAMLE------TSDFLKDDCLKINCTVG 165 (368)
Q Consensus 103 l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~G~~~f~~~~~L~------~~~yl~~d~l~i~~~v~ 165 (368)
|+|+.+...... ....+.|.....+|||.+|+++++|. ++|||.||+|+|++.|.
T Consensus 74 l~n~~~~~~~~~--------~~~~~~F~~~~~~wG~~~fi~~~~L~~~~~~~~~g~l~nD~l~I~~~~~ 134 (134)
T cd03775 74 ISNPGDPSIQLS--------NVAHHRFNAEDKDWGFTRFIELRKLAHRTPDKPSPFLENGELNITVYVR 134 (134)
T ss_pred EEcCCCCccceE--------ccceeEeCCCCCCCChhHcccHHHHcccccCCCCceeECCEEEEEEEEC
Confidence 999964322111 11246676667789999999999996 46999999999999873
No 11
>cd00270 MATH_TRAF_C Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link cell surface TNFRs and receptors of the interleukin-1/Toll-like family to downstream kinase signaling cascades which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems. There are at least six mammalian and three Drosophila proteins containing TRAF domains. The mammalian TRAFs display varying expression profiles, indicating independent and cell type-specific regulation. They display distinct, as well as overlapping functions and interactions with receptors. Most TRAFs, except TRAF1, share N-terminal homology and contain a RING domain, multiple zinc finger domains, and a TRAF domain. TRAFs form homo- and heterotrimers through its TRAF domain. The TRAF domain can be divided into a more divergent N-ter
Probab=99.88 E-value=1.8e-22 Score=166.91 Aligned_cols=132 Identities=27% Similarity=0.412 Sum_probs=100.6
Q ss_pred eEEEEEEccccCccc---CCCCCceeeceeecC--CeEEEEEEEcCCCCCCCCCCcEEEEEEeccC------CcceEEEE
Q 017667 31 GSHHFTIKGYSLSKG---IGIGKHIASDNFSVG--GYQWAIYFYPDGKNPEDNSTYVSVFIALASE------GTDVRALF 99 (368)
Q Consensus 31 ~~~~w~I~~fs~~~~---~~~g~~~~S~~f~~g--G~~W~l~~~p~G~~~~~~~~~lsl~L~~~~~------~w~v~a~~ 99 (368)
++|+|+|.+||.+++ .+.++.++|+.|.+| ||+|+|++||+|...+ ..+|||+||.+.++ +|++.|++
T Consensus 1 g~~~w~I~~fs~~~~~~~~~~~~~~~S~~F~vg~~G~~w~i~~yP~G~~~~-~~~~lsl~L~l~~~~~d~~~~w~~~~~~ 79 (149)
T cd00270 1 GVLIWKIKDYSRKLQEAVAGSNTVLYSPPFYTSRYGYKLCLRLYLNGDGTG-KGTHLSLFVHVMKGEYDALLEWPFRGKI 79 (149)
T ss_pred CEEEEEECCHHHHHHHHhcCCCceEECCCcccCCCCceEEEEEEeCCCCCC-CCCEEEEEEEEeccCCCccccCCccceE
Confidence 589999999999876 246789999999999 9999999999998633 56799999998543 48999999
Q ss_pred EEEEeeCCCCCcce-eeeccccccccCCceec-----ccCccccccceeeccccccCcCcCCCcEEEEEEee
Q 017667 100 ELTLVDQSGKGKHK-VHSHFDRSLESGPYTLK-----YRGSMWGYKRFFRRAMLETSDFLKDDCLKINCTVG 165 (368)
Q Consensus 100 ~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~f~-----~~~~~~G~~~f~~~~~L~~~~yl~~d~l~i~~~v~ 165 (368)
+|.|+|+.++...+ ....+.... ....|. ....+|||.+|+++++|+++||+.||+|+|+|+|.
T Consensus 80 ~~~l~d~~~~~~~~~~~~~~~~~~--~~~~f~~~~~~~~~~~~G~~~fi~~~~L~~~gfl~dD~l~I~~~v~ 149 (149)
T cd00270 80 TLTLLDQSDDSKRKHITETFMPDP--NSSAFQRPPTGENNIGFGYPEFVPLEKLESRGYVKDDTLFIKVEVD 149 (149)
T ss_pred EEEEECCCCccccCceEEEEEcCC--chHhhcCCCcccCCCCcCcceEeEHHHhccCCCEeCCEEEEEEEEC
Confidence 99999998741111 000100000 011222 14568999999999999878999999999999984
No 12
>cd03773 MATH_TRIM37 Tripartite motif containing protein 37 (TRIM37) family, MATH domain; TRIM37 is a peroxisomal protein and is a member of the tripartite motif (TRIM) protein subfamily, also known as the RING-B-box-coiled-coil (RBCC) subfamily of zinc-finger proteins. Mutations in the human TRIM37 gene (also known as MUL) cause Mulibrey (muscle-liver-brain-eye) nanism, a rare growth disorder of prenatal onset characterized by dysmorphic features, pericardial constriction and hepatomegaly. TRIM37, similar to other TRIMs, contains a cysteine-rich, zinc-binding RING-finger domain followed by another cysteine-rich zinc-binding domain, the B-box, and a coiled-coil domain. TRIM37 is autoubiquitinated in a RING domain-dependent manner, indicating that it functions as an ubiquitin E3 ligase. In addition to the tripartite motif, TRIM37 also contains a MATH domain C-terminal to the coiled-coil domain. The MATH domain of TRIM37 has been shown to interact with the TRAF domain of six known TRAFs i
Probab=99.88 E-value=3.9e-22 Score=161.46 Aligned_cols=124 Identities=28% Similarity=0.540 Sum_probs=99.3
Q ss_pred eeEEEEEEccccCcccCCCCCceeeceeecCCeEEEEEEEcCCCCCCCCCCcEEEEEEeccC-CcceEEEEEEEEeeCCC
Q 017667 30 NGSHHFTIKGYSLSKGIGIGKHIASDNFSVGGYQWAIYFYPDGKNPEDNSTYVSVFIALASE-GTDVRALFELTLVDQSG 108 (368)
Q Consensus 30 ~~~~~w~I~~fs~~~~~~~g~~~~S~~f~~gG~~W~l~~~p~G~~~~~~~~~lsl~L~~~~~-~w~v~a~~~~~l~~~~~ 108 (368)
.++++|+|+|||.+++ .|+++.|+.|.+||++|+|++||+|...+ .++|||+||.+.++ .|.+.++++|+|+|+.+
T Consensus 4 ~~~~~~~I~~fS~~~~--~~~~~~S~~F~vgG~~W~i~~yP~G~~~~-~~~~lSl~L~l~~~~~~~~~~~~~l~llnq~~ 80 (132)
T cd03773 4 YDSATFTLENFSTLRQ--SADPVYSDPLNVDGLCWRLKVYPDGNGEV-RGNFLSVFLELCSGLGEASKYEYRVEMVHQAN 80 (132)
T ss_pred CcccEEEECChhhhhc--CCcceeCCCeEeCCccEEEEEECCCCCCC-CCCEEEEEEEeecCCCCceeEEEEEEEEcCCC
Confidence 4679999999998863 57899999999999999999999998743 57899999998764 57888999999999953
Q ss_pred CCcceeeeccccccccCCceecccCccccccceeeccccccCcCcCC--CcEEEEEEee
Q 017667 109 KGKHKVHSHFDRSLESGPYTLKYRGSMWGYKRFFRRAMLETSDFLKD--DCLKINCTVG 165 (368)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~f~~~~~~~G~~~f~~~~~L~~~~yl~~--d~l~i~~~v~ 165 (368)
..... ... ..+.|. ...+|||..|+++++|+++|||.| |+++|+|.|.
T Consensus 81 ~~~~~-~~~-------~~~~f~-~~~~wG~~~Fi~~~~L~~~gfl~~~~D~l~i~~~v~ 130 (132)
T cd03773 81 PTKNI-KRE-------FASDFE-VGECWGYNRFFRLDLLINEGYLLPENDTLILRFSVR 130 (132)
T ss_pred Cccce-EEe-------cccccc-CCCCcCHHHhccHHHHhhCCCcCCCCCEEEEEEEEe
Confidence 22211 111 123343 246799999999999987899999 9999999985
No 13
>cd03776 MATH_TRAF6 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF6 subfamily, TRAF domain, C-terminal MATH subdomain; composed of proteins with similarity to human TRAF6, including the Drosophila protein DTRAF2. TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF6 is the most divergent in its TRAF domain among the mammalian TRAFs. In addition to mediating TNFR family signaling, it is also an essential signaling molecule of the interleukin-1/Toll-like receptor superfamily. Whereas other TRAF molecules display similar and overlapping TNFR-binding specificities, TRAF6 binds completely different sites on receptors such as CD40 and RANK. TRAF6 serves as a molecular bridge between innate and adaptive immunity and plays a central role in osteoimmunology. DTRAF2, as an activator of nuclear factor-kapp
Probab=99.88 E-value=2.1e-22 Score=165.80 Aligned_cols=131 Identities=23% Similarity=0.311 Sum_probs=100.2
Q ss_pred eEEEEEEccccCccc-CCCCCc--eeeceeec--CCeEEEEEEEcCCCCCCCCCCcEEEEEEeccC------CcceEEEE
Q 017667 31 GSHHFTIKGYSLSKG-IGIGKH--IASDNFSV--GGYQWAIYFYPDGKNPEDNSTYVSVFIALASE------GTDVRALF 99 (368)
Q Consensus 31 ~~~~w~I~~fs~~~~-~~~g~~--~~S~~f~~--gG~~W~l~~~p~G~~~~~~~~~lsl~L~~~~~------~w~v~a~~ 99 (368)
|+|.|+|.+||.+++ ++.|+. +.|+.|.+ |||+|+|++||||...+ ..+|||+||.+.++ +|++.|++
T Consensus 1 g~h~~~I~~yS~~~~~~~~g~~~~i~S~~F~~~~gGy~W~i~~yP~G~~~~-~~~~lS~~L~l~~~~~d~~l~wpv~a~~ 79 (147)
T cd03776 1 GIYVWKIKNFSNLRRSMEAGSPVVIHSPGFYTSPPGYKLCARLNLSLPEAR-CPNYISLFVHLMQGENDSHLDWPFQGTI 79 (147)
T ss_pred CEEEEEECCHHHHHHHHhcCCCceEECCCcccCCCCceEEEEEEeCCCCCC-CCCEEEEEEEEeccCCCcccCCccccee
Confidence 589999999997654 677775 88999985 79999999999998743 57899999999653 48999999
Q ss_pred EEEEeeCCCCCcceeeeccccccccCCceec-----ccCccccccceeeccccccCcCcCCCcEEEEEEee
Q 017667 100 ELTLVDQSGKGKHKVHSHFDRSLESGPYTLK-----YRGSMWGYKRFFRRAMLETSDFLKDDCLKINCTVG 165 (368)
Q Consensus 100 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~-----~~~~~~G~~~f~~~~~L~~~~yl~~d~l~i~~~v~ 165 (368)
+|.|+||.+........ +... .....|. .....|||..|+++++|+..+|+.||+++|+|+|.
T Consensus 80 ~~~lldq~~~~~~~~~~-~~~~--~~~~~F~~p~~~~~~~~~G~~~fi~~~~Le~~~yl~dD~l~I~c~V~ 147 (147)
T cd03776 80 TLTLLDQSEPRQNIHET-MMSK--PELLAFQRPTTDRNPKGFGYVEFAHIEDLLQRGFVKNDTLLIKIEVN 147 (147)
T ss_pred EEEEECCCcccCccEEE-EEcC--CChHhhcCCCcCCCCCCeeEceeeEHHHhhhCCCccCCEEEEEEEEC
Confidence 99999998643321100 0000 0112232 13457999999999999888999999999999984
No 14
>cd03781 MATH_TRAF4 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF4 subfamily, TRAF domain, C-terminal MATH subdomain; composed of proteins with similarity to human TRAF4, including the Drosophila protein DTRAF1. TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF4 is highly expressed during embryogenesis, especially in the central and peripheral nervous system. Studies using TRAF4-deficient mice show that TRAF4 is required for neurogenesis, as well as the development of the trachea and the axial skeleton. In addition, TRAF4 augments nuclear factor-kappaB activation triggered by GITR (glucocorticoid-induced TNFR), a receptor expressed in T-cells, B-cells and macrophages. It also participates in counteracting the signaling mediated by Toll-like receptors through its association with TRAF6 and TR
Probab=99.88 E-value=3.8e-22 Score=165.09 Aligned_cols=132 Identities=21% Similarity=0.350 Sum_probs=102.1
Q ss_pred eEEEEEEccccCcccC--C-CCCceeeceeecC--CeEEEEEEEcCCCCCCCCCCcEEEEEEeccC------CcceEEEE
Q 017667 31 GSHHFTIKGYSLSKGI--G-IGKHIASDNFSVG--GYQWAIYFYPDGKNPEDNSTYVSVFIALASE------GTDVRALF 99 (368)
Q Consensus 31 ~~~~w~I~~fs~~~~~--~-~g~~~~S~~f~~g--G~~W~l~~~p~G~~~~~~~~~lsl~L~~~~~------~w~v~a~~ 99 (368)
|.|.|+|.+|+.++++ . .|+.+.|+.|.+| ||+|+|++||||...+ ..+|||+||.+.++ .|++.+++
T Consensus 1 g~~~~~I~gys~~~~~~~~~~~~~i~S~~F~vg~~Gy~w~i~~yPnG~~~~-~~~~vs~~l~l~~ge~d~~l~wp~~a~~ 79 (154)
T cd03781 1 GTLLWKITDYSRKLQEAKGRDNLELFSPPFYTHRYGYKLQVSAFLNGNGSG-EGSHLSVYIRVLPGEYDNLLEWPFSHRI 79 (154)
T ss_pred CEEEEEECCHHHHHHHhhcCCCceEECCCeecCCCCEEEEEEEECCCCCCC-CCCEEEEEEEEecCCcccccCCceeeEE
Confidence 5799999999988864 3 4689999999999 9999999999998743 57899999999773 69999999
Q ss_pred EEEEeeCCCCC--c-ceeeeccccccccCCceec--------ccCccccccceeeccccccCcCcCCCcEEEEEEee
Q 017667 100 ELTLVDQSGKG--K-HKVHSHFDRSLESGPYTLK--------YRGSMWGYKRFFRRAMLETSDFLKDDCLKINCTVG 165 (368)
Q Consensus 100 ~~~l~~~~~~~--~-~~~~~~~~~~~~~~~~~f~--------~~~~~~G~~~f~~~~~L~~~~yl~~d~l~i~~~v~ 165 (368)
+|+|+||.+.. . ..+...+... .....|. ....+||+..|+++++|+.++||.||+++|+|+|+
T Consensus 80 ~~~llDq~~~~~~~~~~~~~~~~~~--~~~~~F~rp~~~~~~~~~~~~G~~~fi~~~~Le~~~yl~dD~l~Irc~v~ 154 (154)
T cd03781 80 TFTLLDQSDPSLSKPQHITETFTPD--PTWKNFQKPSASRLDESTLGFGYPKFISHEDLKKRNYIKDDAIFLRASVE 154 (154)
T ss_pred EEEEECCCCCccccCcceEEEEEcC--CchhhhcCCcccccCCCCCccchhHeeEHHHHhhCCcccCCEEEEEEEeC
Confidence 99999998641 1 1111111000 0112232 23457999999999999988999999999999884
No 15
>cd03771 MATH_Meprin Meprin family, MATH domain; Meprins are multidomain, highly glycosylated extracellular metalloproteases, which are either anchored to the membrane or secreted into extracellular spaces. They are expressed in renal and intestinal brush border membranes, leukocytes, and cancer cells, and are capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides. Meprin proteases are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. Despite their similarity, the two subunits differ in their ability to self-associate, in proteolytic processing during biosynthesis and in substrate specificity. Both subunits are synthesized as membrane spanning proteins, however, the alpha subunit is cleaved during biosynthesis and loses its transmembrane domain. Meprin beta forms homodimers or heterotetramers while meprin alpha oligomerizes into large complexes co
Probab=99.88 E-value=5.7e-22 Score=163.66 Aligned_cols=134 Identities=26% Similarity=0.401 Sum_probs=101.4
Q ss_pred eeEEEEEEccccCcc-cCCCCCceeecee-ecCCeEEEEEEEcCCCCCCCCCCcEEEEEEeccC------Ccc-eEEEEE
Q 017667 30 NGSHHFTIKGYSLSK-GIGIGKHIASDNF-SVGGYQWAIYFYPDGKNPEDNSTYVSVFIALASE------GTD-VRALFE 100 (368)
Q Consensus 30 ~~~~~w~I~~fs~~~-~~~~g~~~~S~~f-~~gG~~W~l~~~p~G~~~~~~~~~lsl~L~~~~~------~w~-v~a~~~ 100 (368)
|..|+|+|.|||.++ +++.|+.++||+| .+|||+|+|++||||+.. .++|||+||++.++ +|+ +.++++
T Consensus 1 cp~hvwkI~~yS~~~~~~~~g~~i~S~~FysvgGy~w~I~~YPnG~~~--~~~~lSlyL~L~~g~~d~~L~WP~v~a~~t 78 (167)
T cd03771 1 CPEAVWRVRNFSQLLETTPKGTKIYSPRFYSPEGYAFQVGLYPNGTES--YPGYTGLYFHLCSGENDDVLEWPCPNRQAT 78 (167)
T ss_pred CCeEEEEEcCchhhhhcCCCCCEEECCCCCccCCeEEEEEEEeCCCCC--CCCcceEEEEEecCCccccccCcceeEEEE
Confidence 468999999999996 6788999999999 899999999999999874 57899999999763 377 589999
Q ss_pred EEEeeCCCCCcceeee----cccccccc---C------Cce----ecc-------cCccccccceeeccccccCcCcCCC
Q 017667 101 LTLVDQSGKGKHKVHS----HFDRSLES---G------PYT----LKY-------RGSMWGYKRFFRRAMLETSDFLKDD 156 (368)
Q Consensus 101 ~~l~~~~~~~~~~~~~----~~~~~~~~---~------~~~----f~~-------~~~~~G~~~f~~~~~L~~~~yl~~d 156 (368)
|+|+||..+...+++. ..+....+ . +.. ... ++.+|||+.|+++++|+..+||+||
T Consensus 79 ~~LlDQ~~~~~~r~~~~~~~~~dp~~~~~~~~~~~~~rP~~~~~~~~~~~~~~~~~~~g~G~~~Fis~~~L~~r~ylk~d 158 (167)
T cd03771 79 MTLLDQDPDIQQRMSNQRSFTTDPSMTSSDNGEYFWDRPSKVGSYDTDTNGCTCYRGPGYGWSTFISHSRLRRRDFLKGD 158 (167)
T ss_pred EEEECCCCcccccCcceEEEecCCcccccccccccccCCccccccccccccccccccCccccccceeHHHhccCCCCcCC
Confidence 9999997422221111 11111000 0 000 111 3458999999999999888899999
Q ss_pred cEEEEEEee
Q 017667 157 CLKINCTVG 165 (368)
Q Consensus 157 ~l~i~~~v~ 165 (368)
++.|+++++
T Consensus 159 tl~i~~~~~ 167 (167)
T cd03771 159 DLIILLDFE 167 (167)
T ss_pred EEEEEEEeC
Confidence 999998874
No 16
>cd03779 MATH_TRAF1 Tumor Necrosis Factor Receptor (TNFR) Associated Factor (TRAF) family, TRAF1 subfamily, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF1 expression is the most restricted among the TRAFs. It is found exclusively in activated lymphocytes, dendritic cells and certain epithelia. TRAF1 associates, directly or indirectly through heterodimerization with TRAF2, with the TNFR family receptors TNFR-2, CD30, RANK, CD40 and LMP1, among others. It also binds the intracellular proteins TRADD, TANK, TRIP, RIP1, RIP2 and FLIP. TRAF1 is unique among the TRAFs in that it lacks a RING domain, which is critical for the activation of nuclear factor-kappaB and Jun NH2-terminal kinase. Studies on TRAF1-deficient mice suggest that TRAF1 has a negative regulatory role in TNFR-mediat
Probab=99.88 E-value=3.9e-22 Score=161.75 Aligned_cols=130 Identities=22% Similarity=0.373 Sum_probs=99.5
Q ss_pred eEEEEEEccccCcccC-CCC--CceeeceeecC--CeEEEEEEEcCCCCCCCCCCcEEEEEEeccC------CcceEEEE
Q 017667 31 GSHHFTIKGYSLSKGI-GIG--KHIASDNFSVG--GYQWAIYFYPDGKNPEDNSTYVSVFIALASE------GTDVRALF 99 (368)
Q Consensus 31 ~~~~w~I~~fs~~~~~-~~g--~~~~S~~f~~g--G~~W~l~~~p~G~~~~~~~~~lsl~L~~~~~------~w~v~a~~ 99 (368)
|.+.|+|.||+.+.+. ..| ..++||+|+.+ ||+|+|++||||.+.+ .++|+|+||.+.++ .|++.+++
T Consensus 1 g~~~W~i~~f~~~~~~a~~~~~~~~~S~~Fyt~~~Gy~w~i~~ypnG~~~~-~~~~iSv~l~l~~g~~D~~l~wpv~~~~ 79 (147)
T cd03779 1 GTFLWKITDVSQKQRESSHGRDVSLCSPAFYTAKYGYKVCLRLYLNGDGAG-KGTHISLFFVIMKGEYDALLPWPFRHKV 79 (147)
T ss_pred CeEEEEECcHHHHHHHHhcCCCceEECCCcccCCCCceEEEEEEcCCCCCC-CCCEEEEEEEEecCCcccccCcceEEEE
Confidence 5799999999865543 333 37999999876 9999999999998844 67899999999874 69999999
Q ss_pred EEEEeeCCCCCcceeeeccccccccCCceec----ccCccccccceeeccccccC--cCcCCCcEEEEEEee
Q 017667 100 ELTLVDQSGKGKHKVHSHFDRSLESGPYTLK----YRGSMWGYKRFFRRAMLETS--DFLKDDCLKINCTVG 165 (368)
Q Consensus 100 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~----~~~~~~G~~~f~~~~~L~~~--~yl~~d~l~i~~~v~ 165 (368)
+|.|+||.+.+... ..+.... ....|. ..+..||+++|+++++|+++ +|++||+++|+|+|.
T Consensus 80 tfsLlDq~~~~~~~--~~~~~~~--~~~~F~rP~~~~n~~~G~~~Fi~~~~Le~s~~~ylkDD~~~Irc~V~ 147 (147)
T cd03779 80 TFMLLDQNNREHVI--DAFRPDL--SSASFQRPVSDMNVASGCPLFFPLKKLQSPKHAYCKDDTIYIKCVVD 147 (147)
T ss_pred EEEEECCCCCCCCc--EeecCCc--ccccccCcccCCCCCcchhheeEHHHhcccCCCcEeCCEEEEEEEEC
Confidence 99999998644321 1111100 012343 23457999999999999875 999999999999984
No 17
>cd03778 MATH_TRAF2 Tumor Necrosis Factor Receptor (TNFR) Associated Factor (TRAF) family, TRAF2 subfamily, TRAF domain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF2 associates with the receptors TNFR-1, TNFR-2, RANK (which mediates differentiation and maturation of osteoclasts) and CD40 (which is important for the proliferation and activation of B cells), among others. It regulates distinct pathways that lead to the activation of nuclear factor-kappaB and Jun NH2-terminal kinases. TRAF2 also indirectly associates with death receptors through its interaction with TRADD (TNFR-associated death domain protein). It is involved in regulating oxidative stress or ROS-induced cell death and in the preconditioning of cells by sublethal stress for protection from subsequent injury. TRAF2 contains a RING finger domain, five z
Probab=99.82 E-value=8.4e-20 Score=149.59 Aligned_cols=135 Identities=21% Similarity=0.301 Sum_probs=99.6
Q ss_pred eeeeEEEEEEccccCcccC-CCC--Cceeeceeec--CCeEEEEEEEcCCCCCCCCCCcEEEEEEeccC------CcceE
Q 017667 28 TINGSHHFTIKGYSLSKGI-GIG--KHIASDNFSV--GGYQWAIYFYPDGKNPEDNSTYVSVFIALASE------GTDVR 96 (368)
Q Consensus 28 ~~~~~~~w~I~~fs~~~~~-~~g--~~~~S~~f~~--gG~~W~l~~~p~G~~~~~~~~~lsl~L~~~~~------~w~v~ 96 (368)
...|.++|+|.||+.+.+. ..| ..++||+|+. +||+|+|++||||++.+ .+.|||+|+++.++ +|++.
T Consensus 16 ~~~g~fiWkI~~fs~~~~~a~~~~~~~i~Sp~Fyt~~~GYk~~l~~ylnG~g~~-~g~~LSly~~l~~Ge~D~~L~WPf~ 94 (164)
T cd03778 16 TYDGVFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTG-RGTHLSLFFVVMKGPNDALLRWPFN 94 (164)
T ss_pred ccCCEEEEEECcHHHHHHHHhcCCCceEECCCcccCCCCeEEEEEEEeCCCCCC-CCCEEEEEEEEecCCcCcccCCcee
Confidence 4569999999999977653 233 4899999975 48999999999998743 67899999999763 49999
Q ss_pred EEEEEEEeeCCCCCcceeeeccccccccCC-cee-cccCccccccceeecccccc-CcCcCCCcEEEEEEee
Q 017667 97 ALFELTLVDQSGKGKHKVHSHFDRSLESGP-YTL-KYRGSMWGYKRFFRRAMLET-SDFLKDDCLKINCTVG 165 (368)
Q Consensus 97 a~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~f-~~~~~~~G~~~f~~~~~L~~-~~yl~~d~l~i~~~v~ 165 (368)
.+++|.|+||++... +...+....+... .+. ...+..||++.|++.++|.. .+|++||++.|+|.|.
T Consensus 95 ~~itl~llDQ~~r~h--i~~~~~pd~~~~~f~RP~~~~n~~~G~~~Fv~l~~l~~~~~Yv~dDtlfIk~~Vd 164 (164)
T cd03778 95 QKVTLMLLDQNNREH--VIDAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKXEAKNSYVRDDAIFIKAIVD 164 (164)
T ss_pred eEEEEEEECCCCCCc--ceeEEEcCcchHhcCCCCcccccCcCcceEEEhhHccccCCcccCCeEEEEEEEC
Confidence 999999999974221 1111111111000 111 22345699999999999965 7999999999999874
No 18
>cd00121 MATH MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins. Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane and are capable of cleaving growth factors, extracellular matrix proteins, and biologically active peptides. TRAF molecules serve as adapter proteins that link cell surface receptors of the Tumor Necrosis Factor and 1nterleukin-1/Toll-like families to downstream kinase cascades, which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems. Other members include the ubiquitin ligases, TRIM37 and SPOP, and the ubiquitin-specific proteases, HAUSP and Ubp21p. A large number of uncharacterized members mostly from lineage-specific expansions in C. elegans and rice contain MATH and BTB domains, similar to SPOP. The MATH doma
Probab=99.81 E-value=3.6e-19 Score=142.31 Aligned_cols=120 Identities=36% Similarity=0.622 Sum_probs=96.3
Q ss_pred eEEEEEEccccCcccCCCCCceeeceeecCCeEEEEEEEcCCCCCCCCCCcEEEEEEeccC-----CcceEEEEEEEEee
Q 017667 31 GSHHFTIKGYSLSKGIGIGKHIASDNFSVGGYQWAIYFYPDGKNPEDNSTYVSVFIALASE-----GTDVRALFELTLVD 105 (368)
Q Consensus 31 ~~~~w~I~~fs~~~~~~~g~~~~S~~f~~gG~~W~l~~~p~G~~~~~~~~~lsl~L~~~~~-----~w~v~a~~~~~l~~ 105 (368)
++|+|+|.+|+. ..++.+.|+.|.++|++|+|.+||+|... +.+|+|+||.|.+. .|.+.++++|.|+|
T Consensus 1 ~~~~~~i~~~~~----~~~~~~~S~~f~~~g~~W~l~~~p~~~~~--~~~~lsv~L~~~~~~~~~~~~~~~~~~~~~l~~ 74 (126)
T cd00121 1 GKHTWKIVNFSE----LEGESIYSPPFEVGGYKWRIRIYPNGDGE--SGDYLSLYLELDKGESDLEKWSVRAEFTLKLVN 74 (126)
T ss_pred CEEEEEECCCCC----CCCcEEECCCEEEcCEeEEEEEEcCCCCC--CCCEEEEEEEecCCCCCCCCCcEEEEEEEEEEC
Confidence 479999999987 34689999999999999999999999763 57899999999764 49999999999999
Q ss_pred CCCCCcceeeeccccccccCCcee-cccCccccccceeeccccccCcCcCCCcEEEEEEee
Q 017667 106 QSGKGKHKVHSHFDRSLESGPYTL-KYRGSMWGYKRFFRRAMLETSDFLKDDCLKINCTVG 165 (368)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~f-~~~~~~~G~~~f~~~~~L~~~~yl~~d~l~i~~~v~ 165 (368)
+++.+...... ...+ .....+|||..|++|++|.+..++.||+++|+|+|.
T Consensus 75 ~~~~~~~~~~~---------~~~~~~~~~~~~G~~~fi~~~~l~~~~~~~~d~l~i~~~v~ 126 (126)
T cd00121 75 QNGGKSLSKSF---------THVFFSEKGSGWGFPKFISWDDLEDSYYLVDDSLTIEVEVK 126 (126)
T ss_pred CCCCccceEec---------cCCcCCCCCCCCChHHeeEHHHhccCCcEECCEEEEEEEEC
Confidence 98333211111 1122 234678999999999999866568999999999984
No 19
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown]
Probab=99.81 E-value=3.8e-19 Score=163.65 Aligned_cols=173 Identities=27% Similarity=0.383 Sum_probs=156.8
Q ss_pred ccccCCCcHHHHHHHhhcCCCCCcEEEEecC-----eEEEeeeeehhccCHHHHHhhccccccc-cceEEEcCCCHHHHH
Q 017667 178 SIQVPESDIGDHFGMLLENEESSDITFNVVG-----EKFHAHKLVLAARSPVFETEFLDAMEED-NHEIVVTDMEPKVFK 251 (368)
Q Consensus 178 ~~~~~~~~l~~~l~~l~~~~~~~Dv~l~v~~-----~~~~~hk~iLa~~S~~F~~~~~~~~~e~-~~~i~l~~~~~~~f~ 251 (368)
..+.+.+++......+++++..+|+.|+|++ ++++|||.+|+..|.+|.+||+|++.+. ..+|.++|+++.+|.
T Consensus 93 nwq~~~~t~~er~~~l~~n~~~adv~fivg~~~~~~q~~paHk~vla~gS~VFdaMf~g~~a~~~s~ei~lpdvepaaFl 172 (521)
T KOG2075|consen 93 NWQAQKETMRERQAALFNNELLADVHFIVGEEDGGSQRIPAHKLVLADGSDVFDAMFYGGLAEDASLEIRLPDVEPAAFL 172 (521)
T ss_pred ccccchhhHHHhhHhhccCcccceeEEEeccCCCcccccchhhhhhhcchHHHHHHhccCcccccCceeecCCcChhHhH
Confidence 3455667788888889999999999999974 6899999999999999999999999999 999999999999999
Q ss_pred HHhhhhhcCCCCCCccCCCCCCCCCCCCcHHHHHHHHHHhcccChhHHHHHHHHHHhccCChhHHHHH-HHHHHhcCChH
Q 017667 252 ALLHFIYKDTLIEDGECSASSSSCVPSVSDTLEAKLLAAAEKYVLPRLRLMCESVLCKVISVNSVAHT-LALADRHCAMD 330 (368)
Q Consensus 252 ~~L~~iY~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~A~~~~~~~l~~~ce~~l~~~i~~~n~~~~-l~~a~~~~~~~ 330 (368)
.+|+|||++.+. +..+++..+|.+|++|.++.|.+.|.++|...+...|.... .+.|..++-++
T Consensus 173 ~~L~flYsdev~---------------~~~dtvi~tl~~AkKY~VpaLer~CVkflr~~l~~~naf~~L~q~A~lf~ep~ 237 (521)
T KOG2075|consen 173 AFLRFLYSDEVK---------------LAADTVITTLYAAKKYLVPALERQCVKFLRKNLMADNAFLELFQRAKLFDEPS 237 (521)
T ss_pred HHHHHHhcchhh---------------hhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhcCHH
Confidence 999999999884 77899999999999999999999999999988777665544 45599999999
Q ss_pred HHHHHHHHHHHhHHHHhccCCCccchhHHHHHHhh
Q 017667 331 LKSVCLKFAAENLVGMSFQFDLFVLSFLFHFYCRL 365 (368)
Q Consensus 331 L~~~~~~~i~~~~~~v~~~~~~~~ls~l~~~~~~~ 365 (368)
|...|++-|..++......+.|.+....++.|+++
T Consensus 238 Li~~c~e~id~~~~~al~~EGf~did~~~dt~~ev 272 (521)
T KOG2075|consen 238 LISICLEVIDKSFEDALTPEGFCDIDSTRDTYEEV 272 (521)
T ss_pred HHHHHHHHhhhHHHhhhCccceeehhhHHHHHHHH
Confidence 99999999999999999999999998778888765
No 20
>KOG4591 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.81 E-value=7.4e-20 Score=149.67 Aligned_cols=159 Identities=26% Similarity=0.354 Sum_probs=137.1
Q ss_pred CCcHHHHHHHhhcCCCCCcEEEEec---CeEEEeeeeehhccCHHHHHhhccccccccceEEEcCCCHHHHHHHhhhhhc
Q 017667 183 ESDIGDHFGMLLENEESSDITFNVV---GEKFHAHKLVLAARSPVFETEFLDAMEEDNHEIVVTDMEPKVFKALLHFIYK 259 (368)
Q Consensus 183 ~~~l~~~l~~l~~~~~~~Dv~l~v~---~~~~~~hk~iLa~~S~~F~~~~~~~~~e~~~~i~l~~~~~~~f~~~L~~iY~ 259 (368)
++.+..-...+++.++++|++|.++ ++.++|||.|||+||.+.+ |.++-.|...+..++|.++++|..+++||||
T Consensus 50 ~SRLLaitadL~Ek~qfSDlk~K~~gns~k~i~AHKfVLAARsD~Wk--faN~~dekse~~~~dDad~Ea~~t~iRWIYT 127 (280)
T KOG4591|consen 50 ISRLLAITADLLEKEQFSDLKFKFAGNSDKHIPAHKFVLAARSDFWK--FANGGDEKSEELDLDDADFEAFHTAIRWIYT 127 (280)
T ss_pred HHHHHHHHHHHhhcccccceeEEecCCccccCchhhhhhhhhcchhh--hccCCCcchhhhcccccCHHHHHHhheeeec
Confidence 3566667778999999999999997 4789999999999999886 3332223366788899999999999999999
Q ss_pred CCCCCCccCCCCCCCCCCCCcHHHHHHHHHHhcccChhHHHHHHHHHHhccCChhHHHHHHHHHHhcCChHHHHHHHHHH
Q 017667 260 DTLIEDGECSASSSSCVPSVSDTLEAKLLAAAEKYVLPRLRLMCESVLCKVISVNSVAHTLALADRHCAMDLKSVCLKFA 339 (368)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~A~~~~~~~l~~~ce~~l~~~i~~~n~~~~l~~a~~~~~~~L~~~~~~~i 339 (368)
+++... .+++.+.++.++|++|+++.|+..|+.-+...+..+||+.++++|++.++..|...|...|
T Consensus 128 DEidfk-------------~dD~~L~el~e~An~FqLe~Lke~C~k~l~a~l~V~NCIk~Ye~AEe~n~~qL~n~~~eiI 194 (280)
T KOG4591|consen 128 DEIDFK-------------EDDEFLLELCELANRFQLELLKERCEKGLGALLHVDNCIKFYEFAEELNARQLMNVAAEII 194 (280)
T ss_pred cccccc-------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHhhHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 999643 4678889999999999999999999999999999999999999999999999999999999
Q ss_pred HHhHHHHhccCCCccchh
Q 017667 340 AENLVGMSFQFDLFVLSF 357 (368)
Q Consensus 340 ~~~~~~v~~~~~~~~ls~ 357 (368)
+.+|..+- ..+|.++++
T Consensus 195 A~~W~dL~-~a~FaqMs~ 211 (280)
T KOG4591|consen 195 AGAWDDLG-KADFAQMSA 211 (280)
T ss_pred HhhccccC-hHHHHhccH
Confidence 99888764 456777765
No 21
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=99.79 E-value=1.7e-19 Score=141.41 Aligned_cols=106 Identities=35% Similarity=0.592 Sum_probs=93.8
Q ss_pred HHHhhcCCCCCcEEEEec-CeEEEeeeeehhccCHHHHHhhccc-cccc-cceEEEcCCCHHHHHHHhhhhhcCCCCCCc
Q 017667 190 FGMLLENEESSDITFNVV-GEKFHAHKLVLAARSPVFETEFLDA-MEED-NHEIVVTDMEPKVFKALLHFIYKDTLIEDG 266 (368)
Q Consensus 190 l~~l~~~~~~~Dv~l~v~-~~~~~~hk~iLa~~S~~F~~~~~~~-~~e~-~~~i~l~~~~~~~f~~~L~~iY~~~~~~~~ 266 (368)
|+++++++.++|++|.++ +.+|+|||.+|+++|+||+.||.++ +.+. ..+|.++++++++|+.+|+|+|++.+.
T Consensus 1 ~~~~~~~~~~~D~~i~v~d~~~~~vhk~iL~~~S~~F~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~Y~~~~~--- 77 (111)
T PF00651_consen 1 LNDLFNSNEFSDVTIRVGDGKTFYVHKNILAARSPYFRNLFEGSKFKESTVPEISLPDVSPEAFEAFLEYMYTGEIE--- 77 (111)
T ss_dssp HHHHHHHTTS--EEEEETTTEEEEE-HHHHHHHBHHHHHHHTTTTSTTSSEEEEEETTSCHHHHHHHHHHHHHSEEE---
T ss_pred ChHHHcCCCCCCEEEEECCCEEEeechhhhhccchhhhhcccccccccccccccccccccccccccccccccCCccc---
Confidence 467788899999999999 8999999999999999999999988 5565 568999999999999999999999985
Q ss_pred cCCCCCCCCCCCCc-HHHHHHHHHHhcccChhHHHHHHHHHHhcc
Q 017667 267 ECSASSSSCVPSVS-DTLEAKLLAAAEKYVLPRLRLMCESVLCKV 310 (368)
Q Consensus 267 ~~~~~~~~~~~~~~-~~~~~~ll~~A~~~~~~~l~~~ce~~l~~~ 310 (368)
++ .+++.+++.+|++|+++.|+..|+++|.+.
T Consensus 78 ------------~~~~~~~~~ll~lA~~~~~~~L~~~~~~~l~~~ 110 (111)
T PF00651_consen 78 ------------INSDENVEELLELADKLQIPELKKACEKFLQES 110 (111)
T ss_dssp ------------EE-TTTHHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred ------------CCHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhC
Confidence 55 788999999999999999999999998753
No 22
>PF00917 MATH: MATH domain; InterPro: IPR002083 Although apparently functionally unrelated, intracellular TRAFs and extracellular meprins share a conserved region of about 180 residues, the meprin and TRAF homology (MATH) domain []. Meprins are mammalian tissue-specific metalloendopeptidases of the astacin family implicated in developmental, normal and pathological processes by hydrolysing a variety of proteins. Various growth factors, cytokines, and extracellular matrix proteins are substrates for meprins. They are composed of five structural domains: an N-terminal endopeptidase domain, a MAM domain (see PDOC00604 from PROSITEDOC), a MATH domain, an EGF-like domain (see PDOC00021 from PROSITEDOC) and a C-terminal transmembrane region. Meprin A and B form membrane bound homotetramer whereas homooligomers of meprin A are secreted. A proteolitic site adjacent to the MATH domain, only present in meprin A, allows the release of the protein from the membrane []. TRAF proteins were first isolated by their ability to interact with TNF receptors []. They promote cell survival by the activation of downstream protein kinases and, finally, transcription factors of the NF-kB and AP-1 family. The TRAF proteins are composed of 3 structural domains: a RING finger (see PDOC00449 from PROSITEDOC) in the N-terminal part of the protein, one to seven TRAF zinc fingers (see PDOC50145 from PROSITEDOC) in the middle and the MATH domain in the C-terminal part []. The MATH domain is necessary and sufficient for self-association and receptor interaction. From the structural analysis two consensus sequence recognised by the TRAF domain have been defined: a major one, [PSAT]x[QE]E and a minor one, PxQxxD []. The structure of the TRAF2 protein reveals a trimeric self-association of the MATH domain []. The domain forms a new, light-stranded antiparallel beta sandwich structure. A coiled-coil region adjacent to the MATH domain is also important for the trimerisation. The oligomerisation is essential for establishing appropriate connections to form signalling complexes with TNF receptor-1. The ligand binding surface of TRAF proteins is located in beta-strands 6 and 7 [].; GO: 0005515 protein binding; PDB: 1D00_E 1CZY_A 1D01_F 1CA9_A 1D0J_D 1F3V_B 1CA4_C 1D0A_A 1QSC_C 1CZZ_C ....
Probab=99.76 E-value=6e-18 Score=134.19 Aligned_cols=113 Identities=33% Similarity=0.541 Sum_probs=90.0
Q ss_pred EccccCcccCCCCCceeeceeecCCeEEEEEEEcCCCCCCCCCCcEEEEEEeccC------CcceEEEEEEEEeeCCCCC
Q 017667 37 IKGYSLSKGIGIGKHIASDNFSVGGYQWAIYFYPDGKNPEDNSTYVSVFIALASE------GTDVRALFELTLVDQSGKG 110 (368)
Q Consensus 37 I~~fs~~~~~~~g~~~~S~~f~~gG~~W~l~~~p~G~~~~~~~~~lsl~L~~~~~------~w~v~a~~~~~l~~~~~~~ 110 (368)
|+|||.+++ .+..+.|+.|.++|++|+|.+||+|+ ++++++||.|..+ .|++.+++++.++++.+..
T Consensus 1 i~nfs~l~~--~~~~~~s~~~~~~g~~W~l~~~~~~~-----~~~l~~~L~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~ 73 (119)
T PF00917_consen 1 IKNFSKLKE--GEEYSSSFVFSHGGYPWRLKVYPKGN-----GKYLSVYLHCDKGENDSDLEWSIEAEFRFRLLNQNGKS 73 (119)
T ss_dssp ETTGGGHHT--SEEEEEEEESSTTSEEEEEEEETTES-----TTEEEEEEEEECSTTGGGSSSSEEEEEEEEEE-TTSCE
T ss_pred CcccceEeC--CCcEECCCeEEECCEEEEEEEEeCCC-----cCcEEEEEEEeecccccccceeeeEEEEEEEecCCCCc
Confidence 789998882 23345569999999999999999975 5789999999764 7999999999999998766
Q ss_pred cceeeeccccccccCCceecccCccccccceeeccccccCcCcCCCcEEEEEEeee
Q 017667 111 KHKVHSHFDRSLESGPYTLKYRGSMWGYKRFFRRAMLETSDFLKDDCLKINCTVGV 166 (368)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~f~~~~~~~G~~~f~~~~~L~~~~yl~~d~l~i~~~v~i 166 (368)
..+... .+.|. ...+|||.+|++|++|.+..|+.||+++|+|+|.|
T Consensus 74 ~~~~~~---------~~~F~-~~~~~g~~~fi~~~~l~~~~fl~dd~l~ie~~v~I 119 (119)
T PF00917_consen 74 ISKRIK---------SHSFN-NPSSWGWSSFISWEDLEDPYFLVDDSLTIEVEVKI 119 (119)
T ss_dssp EEEEEE---------CEEEC-TTSEEEEEEEEEHHHHTTCTTSBTTEEEEEEEEEE
T ss_pred ceeeee---------eeEEe-eecccchhheeEHHHhCccCCeECCEEEEEEEEEC
Confidence 322111 23453 34789999999999998666899999999999976
No 23
>cd03783 MATH_Meprin_Alpha Meprin family, Alpha subunit, MATH domain; Meprins are multidomain extracellular metalloproteases capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides. They are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. The alpha subunit is synthesized as a membrane spanning protein, however, it is cleaved during biosynthesis and loses its transmembrane domain. It oligomerizes into large complexes, containing 10-100 subunits (dimers that associate noncovalently), which are secreted as latent proteases and can move through extracellular spaces in a nondestructive manner. This allows delivery of the concentrated protease to sites containing activating enzymes, such as sites of inflammation, infection or cancerous growth. Meprin alpha shows preference for small or hydrophobic residues at the P1 and P1' sites of its substrate. Both
Probab=99.73 E-value=2.1e-17 Score=134.78 Aligned_cols=136 Identities=21% Similarity=0.359 Sum_probs=99.6
Q ss_pred eeEEEEEEccccCcccC-CCCCceeeceeecC-CeEEEEEEEcCCCCCCCCCCcEEEEEEeccC------Ccce-EEEEE
Q 017667 30 NGSHHFTIKGYSLSKGI-GIGKHIASDNFSVG-GYQWAIYFYPDGKNPEDNSTYVSVFIALASE------GTDV-RALFE 100 (368)
Q Consensus 30 ~~~~~w~I~~fs~~~~~-~~g~~~~S~~f~~g-G~~W~l~~~p~G~~~~~~~~~lsl~L~~~~~------~w~v-~a~~~ 100 (368)
|..+.|+|.||+.+.+. ..+..++||+|+.. ||+.+|++|+||++..+.+.|+|||+++.++ +|++ .-+++
T Consensus 1 cp~~iWkI~nfs~~~~~a~~~~~i~Sp~Fyt~~GYk~~l~~~lng~~~~~~g~~lSl~~~lm~Ge~D~~L~WP~~~~~it 80 (167)
T cd03783 1 CPNAVWRVRNFSQILENTTKGDVLQSPRFYSPEGYGYGVSLYPLSNESDYSGNYTGLYFHLCSGENDAVLEWPALNRQAI 80 (167)
T ss_pred CCceeEEECcHHHHHHhCcCCCeEECCCCccCCCceEEEEEEecCCCCCCCCCEEEEEEEEecccCCCcccCCCcCCEEE
Confidence 35689999999876653 36778999999875 9999999999998744467899999999874 3995 57999
Q ss_pred EEEeeCCCCCcceeee--cccccc--cc----CCcee--------------cccCccccccceeeccccccCcCcCCCcE
Q 017667 101 LTLVDQSGKGKHKVHS--HFDRSL--ES----GPYTL--------------KYRGSMWGYKRFFRRAMLETSDFLKDDCL 158 (368)
Q Consensus 101 ~~l~~~~~~~~~~~~~--~~~~~~--~~----~~~~f--------------~~~~~~~G~~~f~~~~~L~~~~yl~~d~l 158 (368)
+.|+||+.....+++. .+.... .+ ....| ..++.++||+.|++++.|+..+|++||++
T Consensus 81 l~llDQ~~~~~~r~~~~~sf~~d~~~~~~~~~~~~~f~rP~~~~~~~~~~~~~~~~gfG~~~Fish~~L~~r~yikdDtl 160 (167)
T cd03783 81 ITVLDQDPDVRLRMSSSRSFTTDKSQTSSAINGTLRWDRPSRVGTYDTSCDCFRGIDFGWSTFISHSQLRRRSFLKNDDL 160 (167)
T ss_pred EEEEcCCcchhhccccceeeecCCCcccccccccccccCCcccccccccccccCCcccccccceeHHHHhhCCcccCCeE
Confidence 9999997522221111 010000 00 00001 12456899999999999998999999999
Q ss_pred EEEEEee
Q 017667 159 KINCTVG 165 (368)
Q Consensus 159 ~i~~~v~ 165 (368)
.|.++++
T Consensus 161 fI~~~~~ 167 (167)
T cd03783 161 IIFVDFE 167 (167)
T ss_pred EEEEecC
Confidence 9998763
No 24
>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.70 E-value=1.2e-16 Score=143.96 Aligned_cols=146 Identities=21% Similarity=0.271 Sum_probs=134.5
Q ss_pred HHHHhhcCCCCCcEEEEecCeEEEeeeeehhccCHHHHHhhccccccc-cceEEEc----CCCHHHHHHHhhhhhcCCCC
Q 017667 189 HFGMLLENEESSDITFNVVGEKFHAHKLVLAARSPVFETEFLDAMEED-NHEIVVT----DMEPKVFKALLHFIYKDTLI 263 (368)
Q Consensus 189 ~l~~l~~~~~~~Dv~l~v~~~~~~~hk~iLa~~S~~F~~~~~~~~~e~-~~~i~l~----~~~~~~f~~~L~~iY~~~~~ 263 (368)
-+..++.+++.+||++.+-|.+.+.||.-|. +|+||.+||.|-++|+ +..|.++ .++..++...+.=+|.+++.
T Consensus 59 iyq~lf~q~enSDv~l~alg~eWrlHk~yL~-QS~yf~smf~Gtw~es~~~iIqleI~Dp~Id~~al~~a~gsLY~dEve 137 (488)
T KOG4682|consen 59 IYQNLFLQGENSDVILEALGFEWRLHKPYLF-QSEYFKSMFSGTWKESSMNIIQLEIPDPNIDVVALQVAFGSLYRDEVE 137 (488)
T ss_pred HHHHHHhcCCCcceehhhccceeeeeeeeee-ccHHHHHHhccccChhhCceEEEEcCCCcccHHHHHHHHhhhhhhhee
Confidence 3567788999999999999999999999997 8999999999999999 7777764 78999999999999999994
Q ss_pred CCccCCCCCCCCCCCCcHHHHHHHHHHhcccChhHHHHHHHHHHhccCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhH
Q 017667 264 EDGECSASSSSCVPSVSDTLEAKLLAAAEKYVLPRLRLMCESVLCKVISVNSVAHTLALADRHCAMDLKSVCLKFAAENL 343 (368)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~ll~~A~~~~~~~l~~~ce~~l~~~i~~~n~~~~l~~a~~~~~~~L~~~~~~~i~~~~ 343 (368)
+..+.+..+|++|..+++++|.++|.+.+++.+++++++..++-|.+|+...+++.|++++..|+
T Consensus 138 ---------------I~l~dv~gvlAaA~~lqldgl~qrC~evMie~lspkta~~yYea~ckYgle~vk~kc~ewl~~nl 202 (488)
T KOG4682|consen 138 ---------------IKLSDVVGVLAAACLLQLDGLIQRCGEVMIETLSPKTACGYYEAACKYGLESVKKKCLEWLLNNL 202 (488)
T ss_pred ---------------ccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcChhhhhHhhhhhhhhhhHHHHHHHHHHHHHhh
Confidence 89999999999999999999999999999999999999999999999999999999999999887
Q ss_pred HHHhccC
Q 017667 344 VGMSFQF 350 (368)
Q Consensus 344 ~~v~~~~ 350 (368)
-.+....
T Consensus 203 ~~i~~~q 209 (488)
T KOG4682|consen 203 MTIQNVQ 209 (488)
T ss_pred HhhhhHH
Confidence 6665544
No 25
>cd03782 MATH_Meprin_Beta Meprin family, Beta subunit, MATH domain; Meprins are multidomain extracellular metalloproteases capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides. They are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. The beta subunit is a type I membrane protein, which forms homodimers or heterotetramers (alpha2beta2 or alpha3beta). Meprin beta shows preference for acidic residues at the P1 and P1' sites of its substrate. Among its best substrates are growth factors and chemokines such as gastrin and osteopontin. Both alpha and beta subunits contain a catalytic astacin (M12 family) protease domain followed by the adhesion or interaction domains MAM, MATH and AM. The MATH and MAM domains provide symmetrical intersubunit disulfide bonds necessary for the dimerization of meprin subunits. The MATH domain may also be required for f
Probab=99.68 E-value=2.3e-16 Score=127.79 Aligned_cols=134 Identities=21% Similarity=0.333 Sum_probs=100.2
Q ss_pred eeEEEEEEccccCcccC-CCCCceeeceeec-CCeEEEEEEEcCCCCCCCCCCcEEEEEEeccC------CcceE-EEEE
Q 017667 30 NGSHHFTIKGYSLSKGI-GIGKHIASDNFSV-GGYQWAIYFYPDGKNPEDNSTYVSVFIALASE------GTDVR-ALFE 100 (368)
Q Consensus 30 ~~~~~w~I~~fs~~~~~-~~g~~~~S~~f~~-gG~~W~l~~~p~G~~~~~~~~~lsl~L~~~~~------~w~v~-a~~~ 100 (368)
|..+.|+|.||+++.+. +.+..++||+|+. .||+.++++|+||++.+ ++|+|||+++.++ +|++. .+++
T Consensus 1 cp~~iWkI~~fs~~~~~~~~~~~i~Sp~FYt~~GYkl~l~~ylnG~g~~--~~~lsl~~~lm~Ge~D~~L~WPf~~~qit 78 (167)
T cd03782 1 CPEHIWHIRNFTQLLATTPPNGKIYSPPFLSSTGYSFQVGLYLNGTDDY--PGNLAIYLHLTSGPNDDQLQWPCPWQQAT 78 (167)
T ss_pred CCcEEEEeCcHHHHHHhcCCCceEECCCCcCccCceeEEEEEecCCCCC--CCEEEEEEEEeccCCCccccCCCcCCeEE
Confidence 46799999999977654 5677899999975 59999999999998743 6799999999874 39999 8999
Q ss_pred EEEeeCCCCCcceee--e--ccccccccC---Cc-----------------eecccCccccccceeeccccccCcCcCCC
Q 017667 101 LTLVDQSGKGKHKVH--S--HFDRSLESG---PY-----------------TLKYRGSMWGYKRFFRRAMLETSDFLKDD 156 (368)
Q Consensus 101 ~~l~~~~~~~~~~~~--~--~~~~~~~~~---~~-----------------~f~~~~~~~G~~~f~~~~~L~~~~yl~~d 156 (368)
+.|+||+.+...+++ . .+.....+. .+ +...++.++|++.|++++.|+.+.|++||
T Consensus 79 ~~LlDQ~~d~~~r~~~~~~~t~~P~~~s~~n~~f~w~rP~kvg~~~~~~~~~~~~r~~~~G~~~Fish~~L~~r~yikdD 158 (167)
T cd03782 79 MMLLDQHPDIRQRMSNQRSVTTDPNMTSTDSDEYFWDDPRKVGSEVTDTDGSTFYRGPGYGTSAFITHLRLRSRDFIKGD 158 (167)
T ss_pred EEEEcCCCchhhccceeeeEEecCCcccccCccceecCCcccCcccccccccccccccccCccceeeHHHHhhcCcccCC
Confidence 999999752222111 1 222222111 11 00123578999999999999888999999
Q ss_pred cEEEEEEee
Q 017667 157 CLKINCTVG 165 (368)
Q Consensus 157 ~l~i~~~v~ 165 (368)
.+.|-++++
T Consensus 159 ~ifi~~~~e 167 (167)
T cd03782 159 DVIFLLTME 167 (167)
T ss_pred eEEEEEecC
Confidence 999987763
No 26
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac. Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.
Probab=99.67 E-value=1.3e-16 Score=119.26 Aligned_cols=89 Identities=40% Similarity=0.642 Sum_probs=83.1
Q ss_pred cEEEEecCeEEEeeeeehhccCHHHHHhhccccccc-cceEEEcCCCHHHHHHHhhhhhcCCCCCCccCCCCCCCCCCCC
Q 017667 201 DITFNVVGEKFHAHKLVLAARSPVFETEFLDAMEED-NHEIVVTDMEPKVFKALLHFIYKDTLIEDGECSASSSSCVPSV 279 (368)
Q Consensus 201 Dv~l~v~~~~~~~hk~iLa~~S~~F~~~~~~~~~e~-~~~i~l~~~~~~~f~~~L~~iY~~~~~~~~~~~~~~~~~~~~~ 279 (368)
|+++.++|++|+|||.+|+++|+||++||.+++.+. ...+.+++.+++.|+.+|+|+|++.+. +
T Consensus 1 dv~i~v~~~~~~~h~~iL~~~s~~f~~~~~~~~~~~~~~~i~l~~~~~~~f~~~l~~ly~~~~~---------------~ 65 (90)
T smart00225 1 DVTLVVGGKKFKAHKAVLAACSPYFKALFSGDFKESKKSEIYLDDVSPEDFRALLEFLYTGKLD---------------L 65 (90)
T ss_pred CeEEEECCEEEehHHHHHhhcCHHHHHHHcCCCccCCCCEEEecCCCHHHHHHHHHeecCceee---------------c
Confidence 788999999999999999999999999999888777 889999999999999999999999885 6
Q ss_pred cHHHHHHHHHHhcccChhHHHHHHH
Q 017667 280 SDTLEAKLLAAAEKYVLPRLRLMCE 304 (368)
Q Consensus 280 ~~~~~~~ll~~A~~~~~~~l~~~ce 304 (368)
+..++..++.+|++|+++.|+..|+
T Consensus 66 ~~~~~~~l~~~a~~~~~~~l~~~c~ 90 (90)
T smart00225 66 PEENVEELLELADYLQIPGLVELCE 90 (90)
T ss_pred CHHHHHHHHHHHHHHCcHHHHhhhC
Confidence 6679999999999999999999985
No 27
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=99.65 E-value=4e-16 Score=151.35 Aligned_cols=159 Identities=21% Similarity=0.308 Sum_probs=129.0
Q ss_pred CCCCcEEEEe-cCeEEEeeeeehhccCHHHHHhhccccccc-cceEEEcCCCHHHHHHHhhhhhc-CCCCCCccCCCCCC
Q 017667 197 EESSDITFNV-VGEKFHAHKLVLAARSPVFETEFLDAMEED-NHEIVVTDMEPKVFKALLHFIYK-DTLIEDGECSASSS 273 (368)
Q Consensus 197 ~~~~Dv~l~v-~~~~~~~hk~iLa~~S~~F~~~~~~~~~e~-~~~i~l~~~~~~~f~~~L~~iY~-~~~~~~~~~~~~~~ 273 (368)
+..-|+.|.. +|+.+.|||++|++|++||..||..-|.|+ .-.+.+..+..+.+..+|+|+|. ++.....+
T Consensus 708 ~e~~d~~i~~KDGkvl~aHkc~L~aRlEYF~smf~~~w~E~sS~t~~~~p~~~e~m~ivLdylYs~d~~~~~k~------ 781 (1267)
T KOG0783|consen 708 EETMDTVIKLKDGKVLKAHKCFLSARLEYFSSMFQFVWMESSSITVNLSPLTVEHMSIVLDYLYSDDKVELFKD------ 781 (1267)
T ss_pred ccceeEEEEecCCcCcccceeEeeeHHHHHHHHHHHHHhhhccceeecCcchHHHHHHHHHHHHccchHHHHhc------
Confidence 3445777776 678899999999999999999999999898 65566666679999999999994 44321111
Q ss_pred CCCCCCcHHHHHHHHHHhcccChhHHHHHHHHHHhccCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhHHHHhccC---
Q 017667 274 SCVPSVSDTLEAKLLAAAEKYVLPRLRLMCESVLCKVISVNSVAHTLALADRHCAMDLKSVCLKFAAENLVGMSFQF--- 350 (368)
Q Consensus 274 ~~~~~~~~~~~~~ll~~A~~~~~~~l~~~ce~~l~~~i~~~n~~~~l~~a~~~~~~~L~~~~~~~i~~~~~~v~~~~--- 350 (368)
.-..+.+-++|.+||.|-+.+|+..||..|.+.++..++..++++|..|++..|+..|++||+.|+..++.-.
T Consensus 782 ----~~~~dF~~~il~iaDqlli~~Lk~Ice~~ll~kl~lk~~~~llefaamY~ak~L~~~C~dfic~N~~~~Learsi~ 857 (1267)
T KOG0783|consen 782 ----LKESDFMFEILSIADQLLILELKSICEQSLLRKLNLKTLPTLLEFAAMYHAKELYSRCIDFICHNIEFFLEARSIS 857 (1267)
T ss_pred ----cchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHHHhccHh
Confidence 2345678899999999999999999999999999999999999999999999999999999999988876522
Q ss_pred CCc--cchhHHHHHHhh
Q 017667 351 DLF--VLSFLFHFYCRL 365 (368)
Q Consensus 351 ~~~--~ls~l~~~~~~~ 365 (368)
+|. .|..|=++|++|
T Consensus 858 ~~dg~~LK~l~~~yrkm 874 (1267)
T KOG0783|consen 858 EWDGFHLKKLAQRYRKM 874 (1267)
T ss_pred hhcchHHHHHHHHHHHH
Confidence 222 245555666654
No 28
>smart00061 MATH meprin and TRAF homology.
Probab=99.55 E-value=2.3e-14 Score=108.65 Aligned_cols=89 Identities=25% Similarity=0.388 Sum_probs=71.7
Q ss_pred EEEEEccccCcccCCCCCceeeceeecCCeEEEEEEEcCCCCCCCCCCcEEEEEEeccC-----CcceEEEEEEEEeeCC
Q 017667 33 HHFTIKGYSLSKGIGIGKHIASDNFSVGGYQWAIYFYPDGKNPEDNSTYVSVFIALASE-----GTDVRALFELTLVDQS 107 (368)
Q Consensus 33 ~~w~I~~fs~~~~~~~g~~~~S~~f~~gG~~W~l~~~p~G~~~~~~~~~lsl~L~~~~~-----~w~v~a~~~~~l~~~~ 107 (368)
++|+|+||+.+. .|+.+.|++|.+||++|+|.+||+ .+|+|+||.|.+. .|.+.|++++.|+|++
T Consensus 2 ~~~~~~~~~~~~---~~~~~~S~~f~~~g~~W~i~~~p~-------~~~lsl~L~~~~~~~~~~~w~v~a~~~~~l~~~~ 71 (95)
T smart00061 2 LSHTFKNVSRLE---EGESYFSPSEEHFNIPWRLKIYRK-------NGFLSLYLHCEKEECDSRKWSIEAEFTLKLVSQN 71 (95)
T ss_pred ceeEEEchhhcc---cCceEeCChhEEcCceeEEEEEEc-------CCEEEEEEEeCCCcCCCCCeEEEEEEEEEEEeCC
Confidence 579999999763 478999999999999999999999 3689999999653 5899999999999998
Q ss_pred CCCcceeeeccccccccCCceecccCcccccccee
Q 017667 108 GKGKHKVHSHFDRSLESGPYTLKYRGSMWGYKRFF 142 (368)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~f~~~~~~~G~~~f~ 142 (368)
++...+ ...+.|.. ..+|||.+|+
T Consensus 72 ~~~~~~----------~~~~~F~~-~~~~G~~~fi 95 (95)
T smart00061 72 GKSLSK----------KDKHVFEK-PSGWGFSKFI 95 (95)
T ss_pred CCEEee----------eeeEEEcC-CCccceeeEC
Confidence 754311 12355654 6789998875
No 29
>KOG1987 consensus Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=99.47 E-value=4.3e-13 Score=123.70 Aligned_cols=223 Identities=28% Similarity=0.356 Sum_probs=170.0
Q ss_pred EEEccccCcccCCCCCceeeceeecCCeEEEEEEEcCCCCCCCCCCcEEEEEEeccC-CcceEEEEEEEEeeCCCCCc-c
Q 017667 35 FTIKGYSLSKGIGIGKHIASDNFSVGGYQWAIYFYPDGKNPEDNSTYVSVFIALASE-GTDVRALFELTLVDQSGKGK-H 112 (368)
Q Consensus 35 w~I~~fs~~~~~~~g~~~~S~~f~~gG~~W~l~~~p~G~~~~~~~~~lsl~L~~~~~-~w~v~a~~~~~l~~~~~~~~-~ 112 (368)
|.|.+|+... ..++|..|..||..|++.+||.|+ +.+.|+..... +|.+.+.+.+.+.|+..... .
T Consensus 8 ~~~~~~~~~~-----l~~ys~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~l~v~n~~~~~~~~ 75 (297)
T KOG1987|consen 8 WVISNFSSVG-----LVIYSNGFVKGGCKWRLSAYPKGN-------YLSLTLSVSDSPGWERYAKLRLTVVNQKSEKYLS 75 (297)
T ss_pred eeeccCcchh-----hhccccceeecCceEEEEEecCCC-------EEEEEEEeccCCCcceeEEEEEEEccCCCcceee
Confidence 9999987655 578899999999999999999974 57887777554 79999999999999976532 1
Q ss_pred eeeeccccccccCCceecc--cCccccccceeeccccccCcCcCCCcEEEEEEeeeeeeeeccCCccccccCCCcHHHHH
Q 017667 113 KVHSHFDRSLESGPYTLKY--RGSMWGYKRFFRRAMLETSDFLKDDCLKINCTVGVVVSAIDCSRLHSIQVPESDIGDHF 190 (368)
Q Consensus 113 ~~~~~~~~~~~~~~~~f~~--~~~~~G~~~f~~~~~L~~~~yl~~d~l~i~~~v~i~~~~~~~~~~~~~~~~~~~l~~~l 190 (368)
.... ....|.. -...||+..+++...+...
T Consensus 76 ~~~~--------~~~~~~~~~~~~~~g~~~~~~~~~~~~~---------------------------------------- 107 (297)
T KOG1987|consen 76 TVEE--------GFSWFRFNKVLKEWGFGKMLPLTLLIDC---------------------------------------- 107 (297)
T ss_pred eeee--------eEEeccccccccccCcccccChHHhhcc----------------------------------------
Confidence 1100 0111111 1345665544443333210
Q ss_pred HHhhcCCCCCcEEEEecCeEEEeeeeehhccCHHHHHhhccccccc-cceEEEcCCCHHHHHHHhhhhhcCCCCCCccCC
Q 017667 191 GMLLENEESSDITFNVVGEKFHAHKLVLAARSPVFETEFLDAMEED-NHEIVVTDMEPKVFKALLHFIYKDTLIEDGECS 269 (368)
Q Consensus 191 ~~l~~~~~~~Dv~l~v~~~~~~~hk~iLa~~S~~F~~~~~~~~~e~-~~~i~l~~~~~~~f~~~L~~iY~~~~~~~~~~~ 269 (368)
.+..+.+|+.++++++++|+.|+..+..+. ...+.+.++++..++.+..|.|...-.
T Consensus 108 ----------------~~g~~~~~~~~~~a~~~V~~~~~~~d~~~~~~~~~~~~d~~~~~~~~~~~F~~~~s~~------ 165 (297)
T KOG1987|consen 108 ----------------SNGFLVAHKLVLVARSEVFEAMGKSDVFKESSKLITLLEEKPEVLEALNGFQVLPSQV------ 165 (297)
T ss_pred ----------------cCcEEEcCceEEEeeecceeeecccccchhccccccccccchhhHhhhceEEEeccch------
Confidence 044599999999999999999998776665 666788899999999999999997653
Q ss_pred CCCCCCCCCCcHHHHH---HHHHHhcccChhHHHHHHHHHHhccCChhHHHHHHHHHHhcCChHHHHHHHHHHHH--hHH
Q 017667 270 ASSSSCVPSVSDTLEA---KLLAAAEKYVLPRLRLMCESVLCKVISVNSVAHTLALADRHCAMDLKSVCLKFAAE--NLV 344 (368)
Q Consensus 270 ~~~~~~~~~~~~~~~~---~ll~~A~~~~~~~l~~~ce~~l~~~i~~~n~~~~l~~a~~~~~~~L~~~~~~~i~~--~~~ 344 (368)
...+... .++.+|++++...++..|+..++..+...++...+..+..+.+..+...|..++.. ++.
T Consensus 166 ---------~~~~~~~~~~~~~a~~f~~~~~~lk~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ld 236 (297)
T KOG1987|consen 166 ---------SSVERIFEKHPDLAAAFKYKNRHLKLACMPVLLSLIETLNVSQSLQEASNYDLKEAKSALTYVIAAGFKLD 236 (297)
T ss_pred ---------HHHHHhhcCChhhhhccccccHHHHHHHHHHHHHHHHhhhhcccHHHhchhHHHHHHHHHHHHHhccchHh
Confidence 2233343 78889999999999999999999998899999999999999999999999999885 655
Q ss_pred HHhc
Q 017667 345 GMSF 348 (368)
Q Consensus 345 ~v~~ 348 (368)
.+..
T Consensus 237 ~l~~ 240 (297)
T KOG1987|consen 237 WLEK 240 (297)
T ss_pred HHHH
Confidence 5554
No 30
>COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=2.7e-12 Score=124.19 Aligned_cols=127 Identities=24% Similarity=0.441 Sum_probs=102.5
Q ss_pred eeeeeeEEEEEEccccCcccCCCCCceeeceeecCCeEEEEEEEcCCCCCCCCCCcEEEEEEecc--------CCcceEE
Q 017667 26 TQTINGSHHFTIKGYSLSKGIGIGKHIASDNFSVGGYQWAIYFYPDGKNPEDNSTYVSVFIALAS--------EGTDVRA 97 (368)
Q Consensus 26 ~~~~~~~~~w~I~~fs~~~~~~~g~~~~S~~f~~gG~~W~l~~~p~G~~~~~~~~~lsl~L~~~~--------~~w~v~a 97 (368)
.+...-+++|+|++|+.+. +...||+|.+||+.|+|.++|.|++. .+ +|+||.+.. ..|.|.|
T Consensus 34 Ee~~~~sftW~vk~wsel~-----~k~~Sp~F~vg~~twki~lfPqG~nq---~~-~sVyLe~~pqe~e~~~gk~~~cca 104 (1089)
T COG5077 34 EELLEMSFTWKVKRWSELA-----KKVESPPFSVGGHTWKIILFPQGNNQ---CN-VSVYLEYEPQELEETGGKYYDCCA 104 (1089)
T ss_pred HHHhhcccceecCChhhhh-----hhccCCcccccCeeEEEEEecccCCc---cc-cEEEEEeccchhhhhcCcchhhhh
Confidence 3446689999999999888 36889999999999999999999873 33 999998854 1299999
Q ss_pred EEEEEEeeCCCCCcceeeeccccccccCCceecccCccccccceeeccccc--c---CcCcCCCcEEEEEEeeeeee
Q 017667 98 LFELTLVDQSGKGKHKVHSHFDRSLESGPYTLKYRGSMWGYKRFFRRAMLE--T---SDFLKDDCLKINCTVGVVVS 169 (368)
Q Consensus 98 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~G~~~f~~~~~L~--~---~~yl~~d~l~i~~~v~i~~~ 169 (368)
+|.|.|-|+..... ...++..++|.....+|||.+|+.+..|. . ..|+.+|++.|.+.|.|.+.
T Consensus 105 qFaf~Is~p~~pti--------~~iN~sHhrFs~~~tDwGFt~f~dL~kl~~psp~~Ppfleeg~l~ItvyVRvlkd 173 (1089)
T COG5077 105 QFAFDISNPKYPTI--------EYINKSHHRFSMESTDWGFTNFIDLNKLIEPSPGRPPFLEEGTLVITVYVRVLKD 173 (1089)
T ss_pred heeeecCCCCCCch--------hhhhcccccccccccccchhhhhhhhhhcCCCCCCCCcccCCeEEEEEEEEEEeC
Confidence 99999998854221 22344568888889999999999998882 1 25899999999999999874
No 31
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=98.80 E-value=1.3e-08 Score=100.03 Aligned_cols=82 Identities=39% Similarity=0.622 Sum_probs=65.7
Q ss_pred cCCCcHHHHHHHhhcCC----CCCcEEEEecCeEEEeeeeehhccCHHHHHhhccccccc-------------cceEEEc
Q 017667 181 VPESDIGDHFGMLLENE----ESSDITFNVVGEKFHAHKLVLAARSPVFETEFLDAMEED-------------NHEIVVT 243 (368)
Q Consensus 181 ~~~~~l~~~l~~l~~~~----~~~Dv~l~v~~~~~~~hk~iLa~~S~~F~~~~~~~~~e~-------------~~~i~l~ 243 (368)
++.+.+...+..|+... .+.||+|.||++.|+|||+||++||++|+.+|......+ -..|.++
T Consensus 536 ~~ss~fe~sf~kLl~e~~~~ds~hDVtf~vg~~~F~aHKfIl~~rs~flrkL~l~~~~~s~~~dIY~~~~~~~~~~~~ve 615 (1267)
T KOG0783|consen 536 AASSNFEGSFPKLLSEENYKDSFHDVTFYVGTSMFHAHKFILCARSSFLRKLLLQKKKSSVSNDIYIEEITQSHSTIRVE 615 (1267)
T ss_pred cccccchhhhHHHhhccccccccceEEEEecCeecccceEEEEeccHHHHHHHHhhccccccceeeeecccccCceeeec
Confidence 34556677788777543 467999999999999999999999999999996543332 2345577
Q ss_pred CCCHHHHHHHhhhhhcCCC
Q 017667 244 DMEPKVFKALLHFIYKDTL 262 (368)
Q Consensus 244 ~~~~~~f~~~L~~iY~~~~ 262 (368)
++.+..|+.+|+||||+..
T Consensus 616 ~i~p~mfe~lL~~iYtdt~ 634 (1267)
T KOG0783|consen 616 DIPPLMFEILLHYIYTDTL 634 (1267)
T ss_pred cCCHHHHHHHHHHHhcccc
Confidence 9999999999999999965
No 32
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=98.50 E-value=2.3e-07 Score=83.94 Aligned_cols=131 Identities=18% Similarity=0.196 Sum_probs=108.7
Q ss_pred eEEEeeeeehhccCHHHHHhhccccccc-----cceEEEcCCCHHHHHHHhhhhhcCCCCCCccCCCCCCCCCCCCcHHH
Q 017667 209 EKFHAHKLVLAARSPVFETEFLDAMEED-----NHEIVVTDMEPKVFKALLHFIYKDTLIEDGECSASSSSCVPSVSDTL 283 (368)
Q Consensus 209 ~~~~~hk~iLa~~S~~F~~~~~~~~~e~-----~~~i~l~~~~~~~f~~~L~~iY~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (368)
.+++||+.+++ |..||+.||.|++.|+ .....++.....+.+..++|+|++... +..+.
T Consensus 301 ~RyP~hla~i~-R~eyfk~mf~g~f~e~s~n~~~p~lslp~~~~~vveI~lr~lY~d~td---------------i~~~~ 364 (516)
T KOG0511|consen 301 DRYPAHLARIL-RVEYFKSMFVGDFIESSVNDTRPGLSLPSLADVVVEIDLRNLYCDQTD---------------IIFDV 364 (516)
T ss_pred ccccHHHHHHH-HHHHHHHHhccchhhhcCCccccccccchHHHHHHHHHHHHhhccccc---------------chHHH
Confidence 56999999997 7889999999999984 334556677889999999999999884 77788
Q ss_pred HHHHHHHhcccChh--H-HHHHHHHHHhc---cCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhHHHHhccCCCccc
Q 017667 284 EAKLLAAAEKYVLP--R-LRLMCESVLCK---VISVNSVAHTLALADRHCAMDLKSVCLKFAAENLVGMSFQFDLFVL 355 (368)
Q Consensus 284 ~~~ll~~A~~~~~~--~-l~~~ce~~l~~---~i~~~n~~~~l~~a~~~~~~~L~~~~~~~i~~~~~~v~~~~~~~~l 355 (368)
+.+++-.|+++.+. + |+.++...|++ .++.-++..++.++-......|...+-.++..|+..++..+++..+
T Consensus 365 A~dvll~ad~lal~~dr~Lkt~as~~itq~~e~id~y~V~dIl~~~wd~~~~rlEqfa~~~~a~hl~~l~~dPe~~~~ 442 (516)
T KOG0511|consen 365 ASDVLLFADKLALADDRLLKTAASAEITQWLELIDMYGVLDILEYCWDLVACRLEQFAETHEARHLLLLLPDPEGDSS 442 (516)
T ss_pred HhhHHHHhhHhhhhhhhhhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhcCCchhhHH
Confidence 99999999998664 3 55555555554 3466679999999999999999999999999999999999988753
No 33
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=98.28 E-value=7.7e-07 Score=77.25 Aligned_cols=136 Identities=23% Similarity=0.328 Sum_probs=88.5
Q ss_pred CcHHHHHHHhhcCCC-CCcEEEEe-cC--------------eEEEeeeeehhccCHHHHHhhccccccc----------c
Q 017667 184 SDIGDHFGMLLENEE-SSDITFNV-VG--------------EKFHAHKLVLAARSPVFETEFLDAMEED----------N 237 (368)
Q Consensus 184 ~~l~~~l~~l~~~~~-~~Dv~l~v-~~--------------~~~~~hk~iLa~~S~~F~~~~~~~~~e~----------~ 237 (368)
..+-.++..|++..- ..|+++.+ +| .+++||++|.++||++|+.++....+++ .
T Consensus 220 kkLd~Dmkglfd~~c~~d~li~~ssD~elveafggeeNc~deeikahkai~aaRS~ffRnLL~RkiregeE~sdrtlr~P 299 (401)
T KOG2838|consen 220 KKLDEDMKGLFDQDCKHDDLIIESSDGELVEAFGGEENCEDEEIKAHKAIAAARSKFFRNLLLRKIREGEEGSDRTLRRP 299 (401)
T ss_pred hhhhHHHHHHHHhhcccCcEEEEeccchhhhhcCCcccchhHHHHHHHHHHHhhhHHHHHHHHHHhhcccccccccccCC
Confidence 455667777776543 44555544 33 3699999999999999999997554432 2
Q ss_pred ceEEEcC-CCHHH-HHHHhhhhhcCCCCCCccCC--CC-CC---------CCC-CCCcHHHHHHHHHHhcccChhHHHHH
Q 017667 238 HEIVVTD-MEPKV-FKALLHFIYKDTLIEDGECS--AS-SS---------SCV-PSVSDTLEAKLLAAAEKYVLPRLRLM 302 (368)
Q Consensus 238 ~~i~l~~-~~~~~-f~~~L~~iY~~~~~~~~~~~--~~-~~---------~~~-~~~~~~~~~~ll~~A~~~~~~~l~~~ 302 (368)
..|.+++ +=|.. --.+|+++||+.+++.-..- .+ ++ .+. .......+.+|+.+|.+|.++-|.+.
T Consensus 300 kRIifdE~I~PkafA~i~lhclYTD~lDlSl~hkce~SigSLSeakAitnaGkpn~~qaaeAleL~~IAlFfEfemLaQa 379 (401)
T KOG2838|consen 300 KRIIFDELIFPKAFAPIFLHCLYTDRLDLSLAHKCEDSIGSLSEAKAITNAGKPNDLQAAEALELIEIALFFEFEMLAQA 379 (401)
T ss_pred ceeechhhhcchhhhhhhhhhheecccchhhcccCCcccccHHHHHHHHcCCCCchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455553 23344 45678999999987643220 00 00 000 01233556789999999999999999
Q ss_pred HHHHHhccCChhHHHHH
Q 017667 303 CESVLCKVISVNSVAHT 319 (368)
Q Consensus 303 ce~~l~~~i~~~n~~~~ 319 (368)
|++.+......++...+
T Consensus 380 ~e~Vir~acaadlsn~c 396 (401)
T KOG2838|consen 380 CEDVIRKACAADLSNGC 396 (401)
T ss_pred HHHHHHhhhhhhccccc
Confidence 99999877665555443
No 34
>KOG2716 consensus Polymerase delta-interacting protein PDIP1 and related proteins, contain BTB/POZ domain [Inorganic ion transport and metabolism]
Probab=98.26 E-value=5.5e-06 Score=71.70 Aligned_cols=95 Identities=27% Similarity=0.410 Sum_probs=81.8
Q ss_pred EEEEecCeEEEeeeeehhccCHHHHHhhccccc-cc--cceEEEcCCCHHHHHHHhhhhhcCCCCCCccCCCCCCCCCCC
Q 017667 202 ITFNVVGEKFHAHKLVLAARSPVFETEFLDAME-ED--NHEIVVTDMEPKVFKALLHFIYKDTLIEDGECSASSSSCVPS 278 (368)
Q Consensus 202 v~l~v~~~~~~~hk~iLa~~S~~F~~~~~~~~~-e~--~~~i~l~~~~~~~f~~~L~~iY~~~~~~~~~~~~~~~~~~~~ 278 (368)
|.+.|||+.|..++.-|.....+|++|+..++. +. ...|-| |=+|..|..+|.||-.|.++.+
T Consensus 7 vkLnvGG~~F~Tsk~TLtk~dg~fk~m~e~~i~~~~d~s~~IFI-DRSpKHF~~ILNfmRdGdv~LP------------- 72 (230)
T KOG2716|consen 7 VKLNVGGTIFKTSKSTLTKFDGFFKTMLETDIPVEKDESGCIFI-DRSPKHFDTILNFMRDGDVDLP------------- 72 (230)
T ss_pred EEEecCCeEEEeehhhhhhhhhHHHHHhhcCCccccCCcCcEEe-cCChhHHHHHHHhhhcccccCc-------------
Confidence 568899999999999999999999999988764 22 566777 6799999999999998887622
Q ss_pred CcHHHHHHHHHHhcccChhHHHHHHHHHHhcc
Q 017667 279 VSDTLEAKLLAAAEKYVLPRLRLMCESVLCKV 310 (368)
Q Consensus 279 ~~~~~~~~ll~~A~~~~~~~l~~~ce~~l~~~ 310 (368)
.+...+.+|++=|.+|.++.|.++|+..|...
T Consensus 73 e~~kel~El~~EA~fYlL~~Lv~~C~~~i~~~ 104 (230)
T KOG2716|consen 73 ESEKELKELLREAEFYLLDGLVELCQSAIARL 104 (230)
T ss_pred cchHHHHHHHHHHHHhhHHHHHHHHHHHhhhc
Confidence 56788999999999999999999999987643
No 35
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=98.09 E-value=1.8e-06 Score=75.01 Aligned_cols=103 Identities=19% Similarity=0.204 Sum_probs=78.8
Q ss_pred CCCcHHHHHHHhhcCCCCCcEEEEecCeEEEeeeeehhccCHHHHHhhcccccc-c--cceEEEcCCCHHHHHHHhhhhh
Q 017667 182 PESDIGDHFGMLLENEESSDITFNVVGEKFHAHKLVLAARSPVFETEFLDAMEE-D--NHEIVVTDMEPKVFKALLHFIY 258 (368)
Q Consensus 182 ~~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~~hk~iLa~~S~~F~~~~~~~~~e-~--~~~i~l~~~~~~~f~~~L~~iY 258 (368)
|..++.+++...++.....|+-|+....-|+|||++|++|||+|+.+.+..... + .-.|..-+++-.+|+++|+++|
T Consensus 113 ea~sf~kD~ad~ye~k~c~dldiiFkeTcfpahRA~laaRCpffK~l~nsd~e~~ae~i~dik~ag~dm~~feafLh~l~ 192 (401)
T KOG2838|consen 113 EANSFLKDFADGYERKVCGDLDIIFKETCFPAHRAFLAARCPFFKILANSDEEPEAEDICDIKFAGFDMDAFEAFLHSLI 192 (401)
T ss_pred chhHHHHHHhhhhheeeeccceeeeeeccchHHHHHHHhhCcchhhhccCCCCcchhhhhhhhhhccChHHHHHHHHHHH
Confidence 456788899998888888999999999999999999999999999998654322 2 3345556889999999999999
Q ss_pred cCCCCCCccCCCCCCCCCCCCcHHHHHHHHHHhcccCh
Q 017667 259 KDTLIEDGECSASSSSCVPSVSDTLEAKLLAAAEKYVL 296 (368)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~A~~~~~ 296 (368)
+++.-.. ...-.++.-|-++..-|+.
T Consensus 193 tgEfgmE------------d~~fqn~diL~QL~edFG~ 218 (401)
T KOG2838|consen 193 TGEFGME------------DLGFQNSDILEQLCEDFGC 218 (401)
T ss_pred hcccchh------------hcCCchHHHHHHHHHhhCC
Confidence 9986211 1223445556666666665
No 36
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....
Probab=97.89 E-value=1.1e-05 Score=60.82 Aligned_cols=87 Identities=24% Similarity=0.380 Sum_probs=65.7
Q ss_pred EEEEecCeEEEeeeeehh-ccCHHHHHhhccc---cccc-cceEEEcCCCHHHHHHHhhhhhc-CCCCCCccCCCCCCCC
Q 017667 202 ITFNVVGEKFHAHKLVLA-ARSPVFETEFLDA---MEED-NHEIVVTDMEPKVFKALLHFIYK-DTLIEDGECSASSSSC 275 (368)
Q Consensus 202 v~l~v~~~~~~~hk~iLa-~~S~~F~~~~~~~---~~e~-~~~i~l~~~~~~~f~~~L~~iY~-~~~~~~~~~~~~~~~~ 275 (368)
|.|.|||+.|.+-+..|. ....+|.+|+.+. .... ...+-| |-++..|+.+|+|+.+ +.++..
T Consensus 1 V~lNVGG~~f~~~~~tL~~~~~s~l~~~~~~~~~~~~~~~~~~~fi-DRdp~~F~~IL~ylr~~~~l~~~---------- 69 (94)
T PF02214_consen 1 VRLNVGGTIFETSRSTLTRYPDSLLARLFSGERSDDYDDDDGEYFI-DRDPELFEYILNYLRTGGKLPIP---------- 69 (94)
T ss_dssp EEEEETTEEEEEEHHHHHTSTTSTTTSHHHTGHGGGEETTTTEEEE-SS-HHHHHHHHHHHHHTSSB-------------
T ss_pred CEEEECCEEEEEcHHHHhhCCCChhhhHHhhccccccCCccceEEe-ccChhhhhHHHHHHhhcCccCCC----------
Confidence 679999999999999998 4466999999864 2233 667777 6799999999999999 666421
Q ss_pred CCCCcHHHHHHHHHHhcccChhHH-HHHH
Q 017667 276 VPSVSDTLEAKLLAAAEKYVLPRL-RLMC 303 (368)
Q Consensus 276 ~~~~~~~~~~~ll~~A~~~~~~~l-~~~c 303 (368)
.......+++-|++|+++.+ ++.|
T Consensus 70 ----~~~~~~~l~~Ea~fy~l~~l~i~~c 94 (94)
T PF02214_consen 70 ----DEICLEELLEEAEFYGLDELFIEDC 94 (94)
T ss_dssp ----TTS-HHHHHHHHHHHT-HHHHBHHC
T ss_pred ----CchhHHHHHHHHHHcCCCccccCCC
Confidence 24567889999999999988 6655
No 37
>KOG3473 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin C [Transcription]
Probab=97.83 E-value=0.00014 Score=52.99 Aligned_cols=88 Identities=13% Similarity=0.182 Sum_probs=63.6
Q ss_pred EEEEe-cCeEEEeeeeehhccCHHHHHhhccccccc---cceEEEcCCCHHHHHHHhhhh-hcCCCCCCccCCCCCCCCC
Q 017667 202 ITFNV-VGEKFHAHKLVLAARSPVFETEFLDAMEED---NHEIVVTDMEPKVFKALLHFI-YKDTLIEDGECSASSSSCV 276 (368)
Q Consensus 202 v~l~v-~~~~~~~hk~iLa~~S~~F~~~~~~~~~e~---~~~i~l~~~~~~~f~~~L~~i-Y~~~~~~~~~~~~~~~~~~ 276 (368)
|.++. +|.+|-..|. +|.-|+-.++||.|+...+ .+++.+.+++...++.+.+|+ |.-++.... +..+..
T Consensus 19 VkLvS~Ddhefiikre-~AmtSgTiraml~gpg~~se~~~n~v~f~di~shiLeKvc~Yl~Yk~rY~~~s-~eiPeF--- 93 (112)
T KOG3473|consen 19 VKLVSSDDHEFIIKRE-HAMTSGTIRAMLSGPGVFSEAEKNEVYFRDIPSHILEKVCEYLAYKVRYTNSS-TEIPEF--- 93 (112)
T ss_pred eEeecCCCcEEEEeeh-hhhhhhHHHHHHcCCccccccccceEEeccchHHHHHHHHHHhhheeeecccc-ccCCCC---
Confidence 44444 4667777664 5678999999999876554 889999999999999999998 432222110 111111
Q ss_pred CCCcHHHHHHHHHHhcccC
Q 017667 277 PSVSDTLEAKLLAAAEKYV 295 (368)
Q Consensus 277 ~~~~~~~~~~ll~~A~~~~ 295 (368)
.+..+.+.+||.+|+++.
T Consensus 94 -~IppemaleLL~aAn~Le 111 (112)
T KOG3473|consen 94 -DIPPEMALELLMAANYLE 111 (112)
T ss_pred -CCCHHHHHHHHHHhhhhc
Confidence 488999999999999875
No 38
>KOG1863 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=97.17 E-value=0.00061 Score=73.17 Aligned_cols=168 Identities=13% Similarity=0.123 Sum_probs=111.5
Q ss_pred eeEEEEEEccccCcccCCCCCceeeceeecCCeEEEEEEEcCCCCCCCCCCcEEEEEEeccC----CcceEEEEEEEEee
Q 017667 30 NGSHHFTIKGYSLSKGIGIGKHIASDNFSVGGYQWAIYFYPDGKNPEDNSTYVSVFIALASE----GTDVRALFELTLVD 105 (368)
Q Consensus 30 ~~~~~w~I~~fs~~~~~~~g~~~~S~~f~~gG~~W~l~~~p~G~~~~~~~~~lsl~L~~~~~----~w~v~a~~~~~l~~ 105 (368)
....+|...+..... ....||.|..|+.+|++.+.|+|+. ...++.|+.|... .|.+.+.+.+.+.|
T Consensus 26 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~s~~~~~~~~v~~ 96 (1093)
T KOG1863|consen 26 NQSTTIDGIDDKSLL-----YRALSSNFGAGATKWKILIAPKVNS----LQSTRKKLEVMPSQSLKSWSCGAQAVLRVKN 96 (1093)
T ss_pred cccccccCcCcchhh-----hHhcCccccccccceeeeeccccCc----ccceeEEeeeccCCCCcceEecchhhhcccc
Confidence 344556666654444 2567899999999999999999874 4459999999652 29999999999999
Q ss_pred CCCCCcceeeeccccccccCCceecccCccccccceeeccccc--cCcCcCCCcEEEEEEeeeeeeeeccCCccccccCC
Q 017667 106 QSGKGKHKVHSHFDRSLESGPYTLKYRGSMWGYKRFFRRAMLE--TSDFLKDDCLKINCTVGVVVSAIDCSRLHSIQVPE 183 (368)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~G~~~f~~~~~L~--~~~yl~~d~l~i~~~v~i~~~~~~~~~~~~~~~~~ 183 (368)
....... ......+.|.....+||+.+|+.|+++. ..+|+.+|++.+++.|.+......-
T Consensus 97 -~~~~~~~-------~~~~~~h~~~~~~~dwg~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~---------- 158 (1093)
T KOG1863|consen 97 -TIDNLPD-------PEKAIHHVFTADERDWGFSCFSTSSDIRKPEDGYVRNGLEKLEKRVRVEQPTSLM---------- 158 (1093)
T ss_pred -CCCCchh-------hhhhhhhcccccccchhhccchhHhhccCcccccccccceeeeeeeeeecCCccc----------
Confidence 3333221 1112346777788899999999999993 4789999999999999887521110
Q ss_pred CcHHHHHHHhhcCCCCCcEEEEecCeEEEeeeeehhccC-HHHHHhhc
Q 017667 184 SDIGDHFGMLLENEESSDITFNVVGEKFHAHKLVLAARS-PVFETEFL 230 (368)
Q Consensus 184 ~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~~hk~iLa~~S-~~F~~~~~ 230 (368)
... -.+......|-+.-.|.+.++...+-+--. +.||..++
T Consensus 159 ----~~~--d~k~~tg~~vGL~N~GaTCY~NsllQ~lf~~~~FR~~Vy 200 (1093)
T KOG1863|consen 159 ----NPY--DSKRLTGFPVGLKNLGATCYVNSLLQVLFLIPEFRRAVY 200 (1093)
T ss_pred ----chh--hhhhcCCCCccccCCCceeeehHHHHHHHccHHHHHHHh
Confidence 000 001223344666666777777665443221 34555554
No 39
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO). BTB (broad-complex, tramtrack and bric a brac) is a Kelch related domain, also known as the POZ domain []. BTB proteins are divided into subgroups depending on what domain lies at the C terminus. Despite the divergence in sequences, the BTB fold is highly conserved. BTB-Kelch proteins have Kelch repeats that form a beta-propeller that can interact with actin filaments []. BTB and C-terminal Kelch (BACK) together constitute a novel conserved domain, which is thought to have a possible role in substrate orientation in Cullin3-based E3 ligase complexes. Four domains, namely the BTB domain, a kelch domain, a BACK domain, and an intervening region (IVR) make up the aryl hydrocarbon receptor (AHR); a ligand-activated transcription factor []. This entry represents the domain associated with BTB and Kelch.; PDB: 3HVE_A 2EQX_A 3I3N_A 4AP2_A 4APF_A.
Probab=96.97 E-value=0.0011 Score=50.57 Aligned_cols=42 Identities=26% Similarity=0.411 Sum_probs=38.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHhHHHHhccCCCccchh
Q 017667 316 VAHTLALADRHCAMDLKSVCLKFAAENLVGMSFQFDLFVLSF 357 (368)
Q Consensus 316 ~~~~l~~a~~~~~~~L~~~~~~~i~~~~~~v~~~~~~~~ls~ 357 (368)
|+.++.+|..|++..|.+.|.+||..||.++.++++|.+||.
T Consensus 1 C~~i~~~A~~~~~~~L~~~~~~~i~~nf~~v~~~~~f~~L~~ 42 (103)
T PF07707_consen 1 CLSIYRLAEKYGLEELAEACLRFIAKNFNEVSKSDEFLELPF 42 (103)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHTHHHHTTSHHHHCS-H
T ss_pred ChhHHHHHHHcChHHHHHHHHHHHHHHHHHHccchhhhcCCH
Confidence 678999999999999999999999999999999999999976
No 40
>smart00512 Skp1 Found in Skp1 protein family. Family of Skp1 (kinetochore protein required for cell cycle progression) and elongin C (subunit of RNA polymerase II transcription factor SIII) homologues.
Probab=96.86 E-value=0.0037 Score=47.90 Aligned_cols=91 Identities=15% Similarity=0.148 Sum_probs=61.0
Q ss_pred EEEEe-cCeEEEeeeeehhccCHHHHHhhccccccc--cceEEEcCCCHHHHHHHhhhhhcCCCC-CCccC------CCC
Q 017667 202 ITFNV-VGEKFHAHKLVLAARSPVFETEFLDAMEED--NHEIVVTDMEPKVFKALLHFIYKDTLI-EDGEC------SAS 271 (368)
Q Consensus 202 v~l~v-~~~~~~~hk~iLa~~S~~F~~~~~~~~~e~--~~~i~l~~~~~~~f~~~L~~iY~~~~~-~~~~~------~~~ 271 (368)
++|+. +|.+|.+.+.+. ..|..++.|+.+...+. ...|++++++..+++.+++|++...-. ..... ...
T Consensus 4 v~L~S~Dg~~f~v~~~~a-~~S~~i~~~l~~~~~~~~~~~~Ipl~~v~~~~L~~Vi~yc~~h~~~~~~~~~~~~~~~wD~ 82 (104)
T smart00512 4 IKLISSDGEVFEVEREVA-RQSKTIKAMIEDLGVDDENNNPIPLPNVTSKILSKVIEYCEHHVDDPPSVADKDDIPTWDA 82 (104)
T ss_pred EEEEeCCCCEEEecHHHH-HHHHHHHHHHHccCcccCCCCCccCCCcCHHHHHHHHHHHHHcccCCCCccccccccHHHH
Confidence 45554 788999999866 59999999996543222 358999999999999999999654321 11000 000
Q ss_pred CCCCCCCCcHHHHHHHHHHhcccCh
Q 017667 272 SSSCVPSVSDTLEAKLLAAAEKYVL 296 (368)
Q Consensus 272 ~~~~~~~~~~~~~~~ll~~A~~~~~ 296 (368)
+.. .++.+.+.+|+.||+++++
T Consensus 83 ~F~---~~d~~~l~dLl~AAnyL~I 104 (104)
T smart00512 83 EFL---KIDQETLFELILAANYLDI 104 (104)
T ss_pred HHH---cCCHHHHHHHHHHHHhhCC
Confidence 000 1455678888888888764
No 41
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=96.83 E-value=0.0018 Score=58.75 Aligned_cols=110 Identities=15% Similarity=0.203 Sum_probs=83.2
Q ss_pred eEEEeeeeehhccCHHHHHhhccccccc--cceEEEc-CCCHHHHHHHhhhhhcCCCCCCccCCCCCCCCCCCCcHHHHH
Q 017667 209 EKFHAHKLVLAARSPVFETEFLDAMEED--NHEIVVT-DMEPKVFKALLHFIYKDTLIEDGECSASSSSCVPSVSDTLEA 285 (368)
Q Consensus 209 ~~~~~hk~iLa~~S~~F~~~~~~~~~e~--~~~i~l~-~~~~~~f~~~L~~iY~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (368)
+.|.+.+.+|...=.||+..+.....++ ..+|+|. .-+..+|+=+++|+....- .++..|+.
T Consensus 14 rdF~C~~~lL~~~M~YF~~~l~~~~~~~~~~~~idisVhCDv~iF~WLm~yv~~~~p---------------~l~~~Nvv 78 (317)
T PF11822_consen 14 RDFTCPRDLLVSEMRYFAEYLSRYINDSQRWEEIDISVHCDVHIFEWLMRYVKGEPP---------------SLTPSNVV 78 (317)
T ss_pred eeeeccHHHHHHhhHHHHHHHhhcccccCcCCCcceEEecChhHHHHHHHHhhcCCC---------------cCCcCcEE
Confidence 5799999999999999999996532222 4455554 5688999999999999433 47889999
Q ss_pred HHHHHhcccChhHHHHHHHHHHhccCC----------hhHHHHHHHHHHhcCChHHHH
Q 017667 286 KLLAAAEKYVLPRLRLMCESVLCKVIS----------VNSVAHTLALADRHCAMDLKS 333 (368)
Q Consensus 286 ~ll~~A~~~~~~~l~~~ce~~l~~~i~----------~~n~~~~l~~a~~~~~~~L~~ 333 (368)
.||.-|++++|+.|.+.|..|+.++++ --|---+.++|..+...+|..
T Consensus 79 sIliSS~FL~M~~Lve~cl~y~~~~~~~Iv~~~~nl~Cl~~~Ll~RLa~~~t~~el~~ 136 (317)
T PF11822_consen 79 SILISSEFLQMESLVEECLQYCHDHMSEIVASPCNLNCLNDNLLTRLADMFTHEELEA 136 (317)
T ss_pred EeEehhhhhccHHHHHHHHHHHHHhHHHHHcCCCCcccCCHHHHHHHHHhcCcccHhH
Confidence 999999999999999999999854321 112334456677766666555
No 42
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=96.66 E-value=0.0025 Score=58.38 Aligned_cols=102 Identities=25% Similarity=0.289 Sum_probs=72.9
Q ss_pred HHHHHhhcCCC---CCcEEEEe-cCeEEEeeeeehhccCHHHHHhhccccccccceEEEcCCCHHHHHHHhhhhhcCCCC
Q 017667 188 DHFGMLLENEE---SSDITFNV-VGEKFHAHKLVLAARSPVFETEFLDAMEEDNHEIVVTDMEPKVFKALLHFIYKDTLI 263 (368)
Q Consensus 188 ~~l~~l~~~~~---~~Dv~l~v-~~~~~~~hk~iLa~~S~~F~~~~~~~~~e~~~~i~l~~~~~~~f~~~L~~iY~~~~~ 263 (368)
.++..++.+.. ..|+++.. +|..|-|||..|++||.+|..-+..-+.. ..+|.-..+-+.+|..||+|+|-+.-.
T Consensus 135 ahi~s~l~dt~l~~~~di~f~~q~g~~f~ahkfll~arSs~~~~k~v~~~~~-~heI~~~~v~~~~f~~flk~lyl~~na 213 (516)
T KOG0511|consen 135 AHIQSSLRDTFLGCCHDIDFLQQEGANFDAHKFLLEARSSNYFPKDVMFYVQ-GHEIEAHRVILSAFSPFLKQLYLNTNA 213 (516)
T ss_pred hHHHHHhhccccccccchHHHhhccccccHHHHHHHhhhcccCchhhhhccc-cCchhhhhhhHhhhhHHHHHHHHhhhh
Confidence 45566665543 36888877 57889999999999999886554322211 355655677889999999999987432
Q ss_pred CCccCCCCCCCCCCCCcHHHHHHHHHHhcccChhHHHHHHHH
Q 017667 264 EDGECSASSSSCVPSVSDTLEAKLLAAAEKYVLPRLRLMCES 305 (368)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~ll~~A~~~~~~~l~~~ce~ 305 (368)
+-.+....|+.+..+|+.+.|....+.
T Consensus 214 ---------------~~~~qynallsi~~kF~~e~l~~~~~k 240 (516)
T KOG0511|consen 214 ---------------EWKDQYNALLSIEVKFSKEKLSLEISK 240 (516)
T ss_pred ---------------hhhhHHHHHHhhhhhccHHHhHHHHhh
Confidence 344566889999999998877655443
No 43
>KOG2714 consensus SETA binding protein SB1 and related proteins, contain BTB/POZ domain [General function prediction only]
Probab=96.60 E-value=0.0057 Score=57.14 Aligned_cols=90 Identities=22% Similarity=0.339 Sum_probs=69.2
Q ss_pred cEEEEecCeEEEeeeeehhccC--HHHHHhhccccccc---cceEEEcCCCHHHHHHHhhhhhcCCCCCCccCCCCCCCC
Q 017667 201 DITFNVVGEKFHAHKLVLAARS--PVFETEFLDAMEED---NHEIVVTDMEPKVFKALLHFIYKDTLIEDGECSASSSSC 275 (368)
Q Consensus 201 Dv~l~v~~~~~~~hk~iLa~~S--~~F~~~~~~~~~e~---~~~i~l~~~~~~~f~~~L~~iY~~~~~~~~~~~~~~~~~ 275 (368)
=|.|.|||+.|.-.+.-|+... .+|.+++.+.+.-. ...|-| |=+|+.|..+|+||-|+.++.
T Consensus 12 ~V~lNVGGriF~Ts~qTL~~~~~DSffsaL~s~~~~s~~~~~~~iFI-DRDPdlFaviLn~LRTg~L~~----------- 79 (465)
T KOG2714|consen 12 RVKLNVGGRIFETSAQTLTWIPRDSFFSALLSGRINSLKDESGAIFI-DRDPDLFAVILNLLRTGDLDA----------- 79 (465)
T ss_pred eEEEecCceEEecchhhhhcCCcchHHHHHhcCccccccCCCCceEe-cCCchHHHHHHHHHhcCCCCC-----------
Confidence 4788999999999999997766 69999998876544 333555 779999999999999999973
Q ss_pred CCCCcHHHHH-HHHHHhcccChhHHHH---HHHHH
Q 017667 276 VPSVSDTLEA-KLLAAAEKYVLPRLRL---MCESV 306 (368)
Q Consensus 276 ~~~~~~~~~~-~ll~~A~~~~~~~l~~---~ce~~ 306 (368)
...... .|+.-|.+|++..|.+ +|+..
T Consensus 80 ----~g~~~~~llhdEA~fYGl~~llrrl~~~~~~ 110 (465)
T KOG2714|consen 80 ----SGVFPERLLHDEAMFYGLTPLLRRLTLCEEL 110 (465)
T ss_pred ----ccCchhhhhhhhhhhcCcHHHHHHhhcCccc
Confidence 223333 4445899999998876 45553
No 44
>smart00875 BACK BTB And C-terminal Kelch. The BACK domain is found juxtaposed to the BTB domain; they are separated by as little as two residues.
Probab=96.55 E-value=0.0039 Score=47.01 Aligned_cols=42 Identities=17% Similarity=0.194 Sum_probs=38.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHhHHHHhccCCCccchh
Q 017667 316 VAHTLALADRHCAMDLKSVCLKFAAENLVGMSFQFDLFVLSF 357 (368)
Q Consensus 316 ~~~~l~~a~~~~~~~L~~~~~~~i~~~~~~v~~~~~~~~ls~ 357 (368)
|+.++.+|+.|++..|.+.|.+||..||..+.++++|.+|+.
T Consensus 1 c~~i~~~a~~~~~~~L~~~~~~~i~~nf~~~~~~~~f~~L~~ 42 (101)
T smart00875 1 CLGIRRFAELYGLEELLEKALRFILKNFLEVAQSEEFLELSL 42 (101)
T ss_pred CHhHHHHHHHhChHHHHHHHHHHHHHHHHHHhcCcHHhcCCH
Confidence 356788999999999999999999999999999999999985
No 45
>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]
Probab=96.45 E-value=0.0086 Score=51.09 Aligned_cols=92 Identities=24% Similarity=0.358 Sum_probs=74.1
Q ss_pred cEEEEecCeEEEeeeeehhccCH--HHHHhhccc--cccc-cceEEEcCCCHHHHHHHhhhhhcCCCCCCccCCCCCCCC
Q 017667 201 DITFNVVGEKFHAHKLVLAARSP--VFETEFLDA--MEED-NHEIVVTDMEPKVFKALLHFIYKDTLIEDGECSASSSSC 275 (368)
Q Consensus 201 Dv~l~v~~~~~~~hk~iLa~~S~--~F~~~~~~~--~~e~-~~~i~l~~~~~~~f~~~L~~iY~~~~~~~~~~~~~~~~~ 275 (368)
=|.+.++|+.|-..+.-|..|-| -..+||.+. +.+. ..--.+-|-++..|+-+|.|+-.|.++
T Consensus 10 ~vrlnigGk~f~TTidTlv~rEPDSMLa~MF~~~g~~~~~d~kGa~lIDRsp~yFepIlNyLr~Gq~~------------ 77 (302)
T KOG1665|consen 10 MVRLNIGGKKFCTTIDTLVIREPDSMLAAMFSGRGAMCQEDKKGAVLIDRSPKYFEPILNYLRDGQIP------------ 77 (302)
T ss_pred hheeecCCeEEEEeehhhcccCchHHHHHHHccCCCccccccCceEEEccCchhhHHHHHHHhcCcee------------
Confidence 46788999999988888877754 678888654 2233 444555588999999999999999997
Q ss_pred CCCCcHHHHHHHHHHhcccChhHHHHHHHHH
Q 017667 276 VPSVSDTLEAKLLAAAEKYVLPRLRLMCESV 306 (368)
Q Consensus 276 ~~~~~~~~~~~ll~~A~~~~~~~l~~~ce~~ 306 (368)
..+.-++..+|+.|++|++-+|+...++.
T Consensus 78 --~~s~i~~lgvLeeArff~i~sL~~hle~~ 106 (302)
T KOG1665|consen 78 --SLSDIDCLGVLEEARFFQILSLKDHLEDS 106 (302)
T ss_pred --ecCCccHHHHHHHhhHHhhHhHHhHHhhh
Confidence 45667789999999999999999999883
No 46
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....
Probab=96.00 E-value=0.029 Score=38.43 Aligned_cols=56 Identities=11% Similarity=0.295 Sum_probs=43.2
Q ss_pred EEEEe-cCeEEEeeeeehhccCHHHHHhhccccccccceEEEcCCCHHHHHHHhhhhhc
Q 017667 202 ITFNV-VGEKFHAHKLVLAARSPVFETEFLDAMEEDNHEIVVTDMEPKVFKALLHFIYK 259 (368)
Q Consensus 202 v~l~v-~~~~~~~hk~iLa~~S~~F~~~~~~~~~e~~~~i~l~~~~~~~f~~~L~~iY~ 259 (368)
++|+. +|+.|.+.+.++. .|..++.|+.+.. .....|++++++..+++.+++|++.
T Consensus 3 v~L~SsDg~~f~V~~~~a~-~S~~i~~ml~~~~-~~~~~Ipl~~v~~~~L~kViewc~~ 59 (62)
T PF03931_consen 3 VKLVSSDGQEFEVSREAAK-QSKTIKNMLEDLG-DEDEPIPLPNVSSRILKKVIEWCEH 59 (62)
T ss_dssp EEEEETTSEEEEEEHHHHT-TSHHHHHHHHCTC-CCGTEEEETTS-HHHHHHHHHHHHH
T ss_pred EEEEcCCCCEEEeeHHHHH-HhHHHHHHHhhhc-ccccccccCccCHHHHHHHHHHHHh
Confidence 45554 7899999997765 9999999996532 2222799999999999999999964
No 47
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=95.96 E-value=0.0042 Score=59.30 Aligned_cols=79 Identities=23% Similarity=0.351 Sum_probs=64.6
Q ss_pred eeeeeEEEEEEccccCcccC---CCCCceeeceeec--CCeEEEEEEEcCCCCCCCCCCcEEEEEEeccC------Ccce
Q 017667 27 QTINGSHHFTIKGYSLSKGI---GIGKHIASDNFSV--GGYQWAIYFYPDGKNPEDNSTYVSVFIALASE------GTDV 95 (368)
Q Consensus 27 ~~~~~~~~w~I~~fs~~~~~---~~g~~~~S~~f~~--gG~~W~l~~~p~G~~~~~~~~~lsl~L~~~~~------~w~v 95 (368)
....|+..|+|.+|+..+.. ..+..+.|+.|.. .||+-+.++|-||++. +.+.++|+|+....+ .|+.
T Consensus 276 ~~~~g~~iwki~~~~~~~~e~~~~~~~~~~S~~f~t~~~Gyk~~~~~~lng~g~-~~~~~~s~~~~~~~ge~d~~l~wpf 354 (391)
T KOG0297|consen 276 RSYDGTLIWKIPDYGRKKQEAVAGATLSLFSPAFYTSKYGYKLCARIYLNGDGT-GKGTHLSLYFVVMRGEYDALLPWPF 354 (391)
T ss_pred hccCCEEEEEecchhhhhHHHHhccCccccccccccccccHHHHhHhhhcCCCC-CCcceeeeeeeecccCcccccccCC
Confidence 34679999999999655532 3456889999974 5999999999999874 367789999988764 4999
Q ss_pred EEEEEEEEeeC
Q 017667 96 RALFELTLVDQ 106 (368)
Q Consensus 96 ~a~~~~~l~~~ 106 (368)
+-++++.++++
T Consensus 355 ~~~v~~~l~dq 365 (391)
T KOG0297|consen 355 RQKVTLMLLDQ 365 (391)
T ss_pred CCceEEEEecc
Confidence 99999999999
No 48
>KOG1724 consensus SCF ubiquitin ligase, Skp1 component [Posttranslational modification, protein turnover, chaperones]
Probab=95.90 E-value=0.015 Score=47.92 Aligned_cols=103 Identities=17% Similarity=0.173 Sum_probs=71.4
Q ss_pred cCeEEEeeeeehhccCHHHHHhhccccccc-cceEEEcCCCHHHHHHHhhhhhcCCCCCCccCC-------------CCC
Q 017667 207 VGEKFHAHKLVLAARSPVFETEFLDAMEED-NHEIVVTDMEPKVFKALLHFIYKDTLIEDGECS-------------ASS 272 (368)
Q Consensus 207 ~~~~~~~hk~iLa~~S~~F~~~~~~~~~e~-~~~i~l~~~~~~~f~~~L~~iY~~~~~~~~~~~-------------~~~ 272 (368)
+|+.|.+...+. ..|..+.+++...--.. ...|+|+.+...+|..+|.|++...-+...-.. +..
T Consensus 13 DG~~f~ve~~~a-~~s~~i~~~~~~~~~~~~~~~IPl~nV~~~iL~kVIewC~~Hk~d~~~~~~~~~~~~~~~i~~WD~~ 91 (162)
T KOG1724|consen 13 DGEIFEVEEEVA-RQSQTISAHMIEDGCADENDPIPLPNVTSKILKKVIEWCKKHKDDDPANPEDKELPEETDIPEWDAE 91 (162)
T ss_pred CCceeehhHHHH-HHhHHHHHHHHHcCCCccCCccccCccCHHHHHHHHHHHHHcccccccccccccccccCCccHHHHH
Confidence 678888887654 47888888885332222 237999999999999999999884432110000 000
Q ss_pred CCCCCCCcHHHHHHHHHHhcccChhHHHHHHHHHHhccCCh
Q 017667 273 SSCVPSVSDTLEAKLLAAAEKYVLPRLRLMCESVLCKVISV 313 (368)
Q Consensus 273 ~~~~~~~~~~~~~~ll~~A~~~~~~~l~~~ce~~l~~~i~~ 313 (368)
.. .++..++.+|..+|+++++++|...|.+.+...+..
T Consensus 92 Fl---k~d~~tLfdli~AAnyLdi~gLl~~~ck~va~mikg 129 (162)
T KOG1724|consen 92 FL---KVDQGTLFDLILAANYLDIKGLLDLTCKTVANMIKG 129 (162)
T ss_pred HH---hcCHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHcc
Confidence 00 134567889999999999999999999987765533
No 49
>KOG2715 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=94.50 E-value=0.17 Score=41.24 Aligned_cols=96 Identities=20% Similarity=0.266 Sum_probs=72.8
Q ss_pred CcEEEEecCeEEEeeeeehhccCHHHHHhhcccccc----c-cceEEEcCCCHHHHHHHhhhhhcCCCCCCccCCCCCCC
Q 017667 200 SDITFNVVGEKFHAHKLVLAARSPVFETEFLDAMEE----D-NHEIVVTDMEPKVFKALLHFIYKDTLIEDGECSASSSS 274 (368)
Q Consensus 200 ~Dv~l~v~~~~~~~hk~iLa~~S~~F~~~~~~~~~e----~-~~~i~l~~~~~~~f~~~L~~iY~~~~~~~~~~~~~~~~ 274 (368)
.=|.+.|||..|..-|.-|..-+.-|-.-|.....+ . ..--.+-|-+|.-|.-+|.|+-.|++-
T Consensus 21 ~wVRlNVGGt~f~TtktTl~rdp~sFl~rl~q~~~~l~sdrDetGAYlIDRDP~~FgpvLNylRhgklv----------- 89 (210)
T KOG2715|consen 21 LWVRLNVGGTVFLTTKTTLPRDPKSFLYRLCQREKDLPSDRDETGAYLIDRDPFYFGPVLNYLRHGKLV----------- 89 (210)
T ss_pred EEEEEecCCEEEEeeeeccccCcHHHHHHHHhcccCCCCCccccCceEeccCcchHHHHHHHHhcchhh-----------
Confidence 447788999999999999998886665555332211 1 233445577999999999999999883
Q ss_pred CCCCCcHHHHHHHHHHhcccChhHHHHHHHHHHhcc
Q 017667 275 CVPSVSDTLEAKLLAAAEKYVLPRLRLMCESVLCKV 310 (368)
Q Consensus 275 ~~~~~~~~~~~~ll~~A~~~~~~~l~~~ce~~l~~~ 310 (368)
++.-.-..+|.-|++|+++.|.++..+.|.+.
T Consensus 90 ----l~~l~eeGvL~EAefyn~~~li~likd~i~dR 121 (210)
T KOG2715|consen 90 ----LNKLSEEGVLEEAEFYNDPSLIQLIKDRIQDR 121 (210)
T ss_pred ----hhhhhhhccchhhhccCChHHHHHHHHHHHHH
Confidence 44444457899999999999999999988764
No 50
>KOG1778 consensus CREB binding protein/P300 and related TAZ Zn-finger proteins [Transcription]
Probab=93.76 E-value=0.051 Score=49.93 Aligned_cols=140 Identities=21% Similarity=0.226 Sum_probs=112.4
Q ss_pred cEEEEecCeEEEeeeeehhccCHHHHHhhccccccc-cceEEEcCCCHHHHHHHhhhhhcCCCCCCccCCCCCCCCCCCC
Q 017667 201 DITFNVVGEKFHAHKLVLAARSPVFETEFLDAMEED-NHEIVVTDMEPKVFKALLHFIYKDTLIEDGECSASSSSCVPSV 279 (368)
Q Consensus 201 Dv~l~v~~~~~~~hk~iLa~~S~~F~~~~~~~~~e~-~~~i~l~~~~~~~f~~~L~~iY~~~~~~~~~~~~~~~~~~~~~ 279 (368)
|.++...+..+.+|+.+|...|+.|..+....-..+ ...+.+-..+...+..+.+++|.. +.. ..
T Consensus 28 ~~~~~~~~~~~~~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~l~~~-~ek-------------~e 93 (319)
T KOG1778|consen 28 VEIVTDVKDLIPAHSLVLGPASPVFKKVLKQPCRKSLVKGNKILGVPCKAVNVFIRFLYSS-LEK-------------HE 93 (319)
T ss_pred hhhhhhhhhhhHHHHhcccccchHHHHHHhhhcchhhhhcceeecccccccchhhhhhccc-hhh-------------hH
Confidence 445555677899999999999999998886662223 667778888999999999999998 321 12
Q ss_pred cHHHHHHHHHHhcccChhHHHHHHHHHHhc-cCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhHHHHhccCCCcc
Q 017667 280 SDTLEAKLLAAAEKYVLPRLRLMCESVLCK-VISVNSVAHTLALADRHCAMDLKSVCLKFAAENLVGMSFQFDLFV 354 (368)
Q Consensus 280 ~~~~~~~ll~~A~~~~~~~l~~~ce~~l~~-~i~~~n~~~~l~~a~~~~~~~L~~~~~~~i~~~~~~v~~~~~~~~ 354 (368)
-......++.+...|.++..+..|...+.. .++..++...+..+..+....|..++...+...+....+++.+..
T Consensus 94 ~~~~~ihll~~~~~~~v~~~~~d~~~~~~~~~~~~r~~flvl~~~~~~~~~~lr~a~hss~~~~~~~H~~t~~~~~ 169 (319)
T KOG1778|consen 94 MVFFDIHLLALSHVYVVPQPKADCDPILECGLFDKRNVFLVLQLAEHCDFSDLRRAKHSSIMLLFDLHLQTEKWFA 169 (319)
T ss_pred HHHHHHHHHhhhhhhhccCccccCCccccchhhhhHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhcccCcee
Confidence 234456677777899999999999988875 668889999999999999999999999999998888888766654
No 51
>COG5201 SKP1 SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones]
Probab=90.72 E-value=1.8 Score=33.85 Aligned_cols=114 Identities=17% Similarity=0.145 Sum_probs=72.8
Q ss_pred cEEEEe-cCeEEEeeeeehhccCHHHHHhhccccccccceEEEcCCCHHHHHHHhhhhhcCCCCCCccCC--CCC-CC-C
Q 017667 201 DITFNV-VGEKFHAHKLVLAARSPVFETEFLDAMEEDNHEIVVTDMEPKVFKALLHFIYKDTLIEDGECS--ASS-SS-C 275 (368)
Q Consensus 201 Dv~l~v-~~~~~~~hk~iLa~~S~~F~~~~~~~~~e~~~~i~l~~~~~~~f~~~L~~iY~~~~~~~~~~~--~~~-~~-~ 275 (368)
-+.++. +|+.|.+.+. .|-||-..+.|+.... +....|.++.+...+|+.+++|+-...-....+.. ... +. .
T Consensus 3 ~i~l~s~dge~F~vd~~-iAerSiLikN~l~d~~-~~n~p~p~pnVrSsvl~kv~ew~ehh~~s~sede~d~~~rks~p~ 80 (158)
T COG5201 3 MIELESIDGEIFRVDEN-IAERSILIKNMLCDST-ACNYPIPAPNVRSSVLMKVQEWMEHHTSSLSEDENDLEIRKSKPS 80 (158)
T ss_pred ceEEEecCCcEEEehHH-HHHHHHHHHHHhcccc-ccCCCCcccchhHHHHHHHHHHHHhccccCCCccChHhhhccCCc
Confidence 345544 6788888774 5678888888875421 11345778899999999999998543322221111 111 00 0
Q ss_pred CC------CCcHHHHHHHHHHhcccChhHHHHHHHHHHhccCChhHH
Q 017667 276 VP------SVSDTLEAKLLAAAEKYVLPRLRLMCESVLCKVISVNSV 316 (368)
Q Consensus 276 ~~------~~~~~~~~~ll~~A~~~~~~~l~~~ce~~l~~~i~~~n~ 316 (368)
+. .++.+.+.++..+|++++++.|.+.|...+.+.+...+-
T Consensus 81 D~wdr~Fm~vDqemL~eI~laaNYL~ikpLLd~gCKivaemirgkSp 127 (158)
T COG5201 81 DFWDRFFMEVDQEMLLEICLAANYLEIKPLLDLGCKIVAEMIRGKSP 127 (158)
T ss_pred cHHHHHHHHhhHHHHHHHHHhhccccchHHHHHHHHHHHHHHccCCH
Confidence 00 123456677888999999999999999987766544443
No 52
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a dimerisation domain found at the C-terminal of SKP1 proteins [], as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. This domain is multi-helical in structure, and consists of an interlocked herterodimer in F-box proteins.; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 2P1O_A 3OGL_G 3OGM_A 3C6O_A 2P1N_A 2P1Q_A 3OGK_I 3C6N_A 3C6P_A 2P1P_A ....
Probab=90.63 E-value=0.39 Score=34.50 Aligned_cols=49 Identities=18% Similarity=0.230 Sum_probs=33.6
Q ss_pred CcHHHHHHHHHHhcccChhHHHHHHHHHHhccC---ChhHHHHHHHHHHhcC
Q 017667 279 VSDTLEAKLLAAAEKYVLPRLRLMCESVLCKVI---SVNSVAHTLALADRHC 327 (368)
Q Consensus 279 ~~~~~~~~ll~~A~~~~~~~l~~~ce~~l~~~i---~~~n~~~~l~~a~~~~ 327 (368)
.+...+.+|+.+|++++++.|.+.|...+...+ +++.+..++.+...+.
T Consensus 11 ~~~~~L~~l~~AA~yL~I~~L~~~~~~~iA~~i~gks~eeir~~fgi~~d~t 62 (78)
T PF01466_consen 11 VDNDELFDLLNAANYLDIKGLLDLCCKYIANMIKGKSPEEIRKYFGIENDLT 62 (78)
T ss_dssp S-HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-HHHHHHHHT---TSS
T ss_pred cCHHHHHHHHHHHHHHcchHHHHHHHHHHHHHhcCCCHHHHHHHcCCCCCCC
Confidence 466789999999999999999999999877544 5555555555555443
No 53
>KOG2723 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=83.10 E-value=4.4 Score=35.27 Aligned_cols=95 Identities=15% Similarity=0.162 Sum_probs=60.3
Q ss_pred CCCcE-EEEecCeEEEeeee-ehhccCHHHHHhhccccccc---cceEEEcCCCHHHHHHHhhhhhcCCCCCCccCCCCC
Q 017667 198 ESSDI-TFNVVGEKFHAHKL-VLAARSPVFETEFLDAMEED---NHEIVVTDMEPKVFKALLHFIYKDTLIEDGECSASS 272 (368)
Q Consensus 198 ~~~Dv-~l~v~~~~~~~hk~-iLa~~S~~F~~~~~~~~~e~---~~~i~l~~~~~~~f~~~L~~iY~~~~~~~~~~~~~~ 272 (368)
.+.|+ .+.|||+-|..-.. +++-.-....+||++...-. .....| |=+-..|+.+|+|+-+......
T Consensus 6 ~~~~~v~lnvGG~~ytt~l~tL~~~~ds~L~~~f~~~~~~~~d~~g~~fI-DRDG~lFRyvL~~LRt~~l~lp------- 77 (221)
T KOG2723|consen 6 EYPDVVELNVGGAIYTTRLGTLTKFPDSMLARMFSGELPLLRDSKGRYFI-DRDGFLFRYVLDYLRTKALLLP------- 77 (221)
T ss_pred ccCCceeeccCCeEEEeeccceeechHHHHHhhcCCCCCccccccccEEE-cCCcchHHHHHHHhcccccccc-------
Confidence 34454 45566665554444 33334456677776532221 444555 5577899999999999443211
Q ss_pred CCCCCCCcHHHHHHHHHHhcccChhHHHHHHHHH
Q 017667 273 SSCVPSVSDTLEAKLLAAAEKYVLPRLRLMCESV 306 (368)
Q Consensus 273 ~~~~~~~~~~~~~~ll~~A~~~~~~~l~~~ce~~ 306 (368)
....++..|+..|++|+++.+...+.+.
T Consensus 78 ------e~f~e~~~L~rEA~f~~l~~~~~~l~~~ 105 (221)
T KOG2723|consen 78 ------EDFAEVERLVREAEFFQLEAPVTYLLNS 105 (221)
T ss_pred ------hhhhhHHHHHHHHHHHccccHHHHHhcc
Confidence 2336788999999999999877766653
No 54
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=80.46 E-value=1.2 Score=40.89 Aligned_cols=48 Identities=15% Similarity=0.194 Sum_probs=42.4
Q ss_pred cCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhHHHHhccC-CCccchh
Q 017667 310 VISVNSVAHTLALADRHCAMDLKSVCLKFAAENLVGMSFQF-DLFVLSF 357 (368)
Q Consensus 310 ~i~~~n~~~~l~~a~~~~~~~L~~~~~~~i~~~~~~v~~~~-~~~~ls~ 357 (368)
.++++|++.++.-++...++.|.+.|+.|+..|+.+|+.++ ++.-|+.
T Consensus 71 ~l~~~NvvsIliSS~FL~M~~Lve~cl~y~~~~~~~Iv~~~~nl~Cl~~ 119 (317)
T PF11822_consen 71 SLTPSNVVSILISSEFLQMESLVEECLQYCHDHMSEIVASPCNLNCLND 119 (317)
T ss_pred cCCcCcEEEeEehhhhhccHHHHHHHHHHHHHhHHHHHcCCCCcccCCH
Confidence 57999999999999999999999999999999999999865 5555654
No 55
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=75.01 E-value=4.8 Score=30.41 Aligned_cols=31 Identities=39% Similarity=0.495 Sum_probs=28.3
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHHh
Q 017667 312 SVNSVAHTLALADRHCAMDLKSVCLKFAAEN 342 (368)
Q Consensus 312 ~~~n~~~~l~~a~~~~~~~L~~~~~~~i~~~ 342 (368)
+.+++..++.+|+.++++.|++.|.+++.++
T Consensus 80 ~~~~~~~ll~lA~~~~~~~L~~~~~~~l~~~ 110 (111)
T PF00651_consen 80 SDENVEELLELADKLQIPELKKACEKFLQES 110 (111)
T ss_dssp -TTTHHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHhC
Confidence 3788999999999999999999999999875
No 56
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO). BTB (broad-complex, tramtrack and bric a brac) is a Kelch related domain, also known as the POZ domain []. BTB proteins are divided into subgroups depending on what domain lies at the C terminus. Despite the divergence in sequences, the BTB fold is highly conserved. BTB-Kelch proteins have Kelch repeats that form a beta-propeller that can interact with actin filaments []. BTB and C-terminal Kelch (BACK) together constitute a novel conserved domain, which is thought to have a possible role in substrate orientation in Cullin3-based E3 ligase complexes. Four domains, namely the BTB domain, a kelch domain, a BACK domain, and an intervening region (IVR) make up the aryl hydrocarbon receptor (AHR); a ligand-activated transcription factor []. This entry represents the domain associated with BTB and Kelch.; PDB: 3HVE_A 2EQX_A 3I3N_A 4AP2_A 4APF_A.
Probab=68.96 E-value=14 Score=27.36 Aligned_cols=59 Identities=22% Similarity=0.301 Sum_probs=38.6
Q ss_pred HHHHHHhcccChhHHHHHHHHHHhcc------------CChhHHHHHHHHHHh--cCChHHHHHHHHHHHHhH
Q 017667 285 AKLLAAAEKYVLPRLRLMCESVLCKV------------ISVNSVAHTLALADR--HCAMDLKSVCLKFAAENL 343 (368)
Q Consensus 285 ~~ll~~A~~~~~~~l~~~ce~~l~~~------------i~~~n~~~~l~~a~~--~~~~~L~~~~~~~i~~~~ 343 (368)
.+++.+|+.|++..|...|.++|..+ ++.+.+..++.--+- .+-..+-+++++++..+.
T Consensus 2 ~~i~~~A~~~~~~~L~~~~~~~i~~nf~~v~~~~~f~~L~~~~l~~iL~~~~l~v~~E~~v~~av~~W~~~~~ 74 (103)
T PF07707_consen 2 LSIYRLAEKYGLEELAEACLRFIAKNFNEVSKSDEFLELPFDQLIEILSSDDLNVSSEDDVFEAVLRWLKHNP 74 (103)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHTHHHHTTSHHHHCS-HHHHHHHHHTSS--ECTCCCHHHHHHHHHHCTH
T ss_pred hhHHHHHHHcChHHHHHHHHHHHHHHHHHHccchhhhcCCHHHHHHHHhccccccccHHHHHHHHHHHHHhCH
Confidence 46889999999999999999999864 222333333332111 233468888888888554
No 57
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown]
Probab=59.77 E-value=6.1 Score=38.13 Aligned_cols=32 Identities=28% Similarity=0.445 Sum_probs=29.6
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHHHHHh
Q 017667 311 ISVNSVAHTLALADRHCAMDLKSVCLKFAAEN 342 (368)
Q Consensus 311 i~~~n~~~~l~~a~~~~~~~L~~~~~~~i~~~ 342 (368)
+..+|++.++..|++|..+.|.+.|++||..+
T Consensus 185 ~~~dtvi~tl~~AkKY~VpaLer~CVkflr~~ 216 (521)
T KOG2075|consen 185 LAADTVITTLYAAKKYLVPALERQCVKFLRKN 216 (521)
T ss_pred hhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 57789999999999999999999999999855
No 58
>KOG3840 consensus Uncharaterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=53.57 E-value=29 Score=31.62 Aligned_cols=67 Identities=18% Similarity=0.331 Sum_probs=47.6
Q ss_pred CCCCcEEEEecCeEEEeeeeehhccCH-HHHHhhccccc--c-c-cceEEE-cCCCHHHHHHHhhhhhcCCCC
Q 017667 197 EESSDITFNVVGEKFHAHKLVLAARSP-VFETEFLDAME--E-D-NHEIVV-TDMEPKVFKALLHFIYKDTLI 263 (368)
Q Consensus 197 ~~~~Dv~l~v~~~~~~~hk~iLa~~S~-~F~~~~~~~~~--e-~-~~~i~l-~~~~~~~f~~~L~~iY~~~~~ 263 (368)
+...-++..+.+.+|-+.+.+|.+.-. -.-.||.++.. . + ..+..+ ++++..+|+++|+|--+|.+-
T Consensus 93 g~~~~~t~lvd~~rf~v~q~llt~~p~Tmlg~mf~~g~~f~~pNErgEyeVAdGi~s~vFRAILdYYksG~iR 165 (438)
T KOG3840|consen 93 GEGDKVCLLVDQTRFLVSQRLLTSKPDTMLGRMFSMGADLVSPNERDEFEVADGMTSSCFRAILDYYQSGTMR 165 (438)
T ss_pred CCCcceEEEeeeEEEEeeeeeecCCcchhhhhhhcccccccCCCcCCceehhcchhHHHHHHHHHHHhcCcee
Confidence 344568888999999999999876532 33455554422 1 1 455665 479999999999999888763
No 59
>PHA03098 kelch-like protein; Provisional
Probab=51.47 E-value=24 Score=35.24 Aligned_cols=33 Identities=21% Similarity=0.312 Sum_probs=30.1
Q ss_pred cCChhHHHHHHHHHHhcCChHHHHHHHHHHHHh
Q 017667 310 VISVNSVAHTLALADRHCAMDLKSVCLKFAAEN 342 (368)
Q Consensus 310 ~i~~~n~~~~l~~a~~~~~~~L~~~~~~~i~~~ 342 (368)
.++.+|+.+++..|+.+..+.|++.|.+|+..+
T Consensus 72 ~i~~~~~~~ll~~A~~l~~~~l~~~C~~~l~~~ 104 (534)
T PHA03098 72 NITSNNVKDILSIANYLIIDFLINLCINYIIKI 104 (534)
T ss_pred EEcHHHHHHHHHHHHHhCcHHHHHHHHHHHHHh
Confidence 368899999999999999999999999999853
No 60
>PF09593 Pathogen_betaC1: Beta-satellite pathogenicity beta C1 protein; InterPro: IPR018583 Cotton leaf-curl disease - CLCuD - is of major economic importance in cotton-growing areas of the far-east. The infectious agent appears to be a single-stranded DNA molecule of approx 1350 nucleotides in length, which, when inoculated with the Begomovirus into cotton, induces symptoms typical of CLCuD. This molecule requires the Begomovirus for replication and encapsidation []. DNA beta encodes a single protein, betaC1. The intracellular distribution of betaC1 is consistent with the hypothesis that it has a role in transporting the DNA A of Begomovirus from the nuclear site of replication to the plasmodesmatal exit sites of the infected cell. The DNA beta-encoded protein, betaC1, is the determinant of both pathogenicity and suppression of gene silencing [].
Probab=48.80 E-value=49 Score=25.74 Aligned_cols=54 Identities=20% Similarity=0.299 Sum_probs=35.0
Q ss_pred cCeEEEeeeeehhccCHHHHHhhcc-ccccccceEEEc-CC--CHHHHHHHhhhhhcCCC
Q 017667 207 VGEKFHAHKLVLAARSPVFETEFLD-AMEEDNHEIVVT-DM--EPKVFKALLHFIYKDTL 262 (368)
Q Consensus 207 ~~~~~~~hk~iLa~~S~~F~~~~~~-~~~e~~~~i~l~-~~--~~~~f~~~L~~iY~~~~ 262 (368)
++.++.+|-.+++++||...+.=.- ++ +-..+..+ |+ --+..+..|.++|.+.-
T Consensus 20 ~~~~i~V~i~l~ST~sP~l~k~~f~IpY--~~~~ii~PFDFNglEe~I~~~l~~mY~~s~ 77 (117)
T PF09593_consen 20 EDMSIFVHIQLFSTRSPALIKKKFIIPY--THEGIIPPFDFNGLEEGIKNTLKIMYKDSK 77 (117)
T ss_pred CCCEEEEEEEEEECCChHHheEEEEEec--cCCCeECCcccCcHHHHHHHHHHHHhCCCC
Confidence 4789999999999999987542110 00 01112221 22 24778999999999875
No 61
>PHA02713 hypothetical protein; Provisional
Probab=42.15 E-value=50 Score=33.35 Aligned_cols=33 Identities=27% Similarity=0.251 Sum_probs=30.4
Q ss_pred cCChhHHHHHHHHHHhcCChHHHHHHHHHHHHh
Q 017667 310 VISVNSVAHTLALADRHCAMDLKSVCLKFAAEN 342 (368)
Q Consensus 310 ~i~~~n~~~~l~~a~~~~~~~L~~~~~~~i~~~ 342 (368)
.++.+|+.+++..|+.+....|++.|.+|+..+
T Consensus 90 ~i~~~nv~~ll~aA~~lqi~~l~~~C~~~l~~~ 122 (557)
T PHA02713 90 HISSMNVIDVLKCADYLLIDDLVTDCESYIKDY 122 (557)
T ss_pred CCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHhh
Confidence 378899999999999999999999999999854
No 62
>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=41.00 E-value=21 Score=33.88 Aligned_cols=33 Identities=24% Similarity=0.246 Sum_probs=29.8
Q ss_pred CCcHHHHHHHHHHhcccChhHHHHHHHHHHhcc
Q 017667 278 SVSDTLEAKLLAAAEKYVLPRLRLMCESVLCKV 310 (368)
Q Consensus 278 ~~~~~~~~~ll~~A~~~~~~~l~~~ce~~l~~~ 310 (368)
.++.+++...+.+|.+|+++.++..|.++|..+
T Consensus 169 ~lspkta~~yYea~ckYgle~vk~kc~ewl~~n 201 (488)
T KOG4682|consen 169 TLSPKTACGYYEAACKYGLESVKKKCLEWLLNN 201 (488)
T ss_pred hcChhhhhHhhhhhhhhhhHHHHHHHHHHHHHh
Confidence 367889999999999999999999999998764
No 63
>PF06887 DUF1265: Protein of unknown function (DUF1265); InterPro: IPR009676 This family represents a conserved region approximately 50 residues long within a number of proteins of unknown function that seem to be restricted to Caenorhabditis elegans.
Probab=40.23 E-value=39 Score=21.43 Aligned_cols=35 Identities=11% Similarity=0.152 Sum_probs=26.4
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHH-HhHHHHh
Q 017667 313 VNSVAHTLALADRHCAMDLKSVCLKFAA-ENLVGMS 347 (368)
Q Consensus 313 ~~n~~~~l~~a~~~~~~~L~~~~~~~i~-~~~~~v~ 347 (368)
..-+..++..|+......|++.|..-|. -||.+.+
T Consensus 10 l~YV~nmLivA~d~~f~~v~~~C~Atii~yHf~DF~ 45 (48)
T PF06887_consen 10 LMYVCNMLIVAHDARFGNVQNCCIATIISYHFHDFI 45 (48)
T ss_pred HHHHHhHheeeccccchHHHHHHHHHHHHHHHHHHH
Confidence 3456677888888888899999988877 5665544
No 64
>PF14733 ACDC: AP2-coincident C-terminal
Probab=35.60 E-value=74 Score=23.37 Aligned_cols=65 Identities=11% Similarity=0.085 Sum_probs=45.3
Q ss_pred HHHHHHHhcccChhHHHHHHHHHHhccCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhHHHHhccCCCccchhHHHHHH
Q 017667 284 EAKLLAAAEKYVLPRLRLMCESVLCKVISVNSVAHTLALADRHCAMDLKSVCLKFAAENLVGMSFQFDLFVLSFLFHFYC 363 (368)
Q Consensus 284 ~~~ll~~A~~~~~~~l~~~ce~~l~~~i~~~n~~~~l~~a~~~~~~~L~~~~~~~i~~~~~~v~~~~~~~~ls~l~~~~~ 363 (368)
...+.+.|-.|-+.+|+..|...+-..+.. ...+.+.+.+..|+..|.......+|-+++..|.
T Consensus 4 ~L~l~K~Ai~~iL~DL~~~c~~~~~~~~~~----------------~~~~~~~~~i~~H~~~V~~a~~~~~L~pyl~lF~ 67 (91)
T PF14733_consen 4 RLSLCKEAILLILSDLKDNCLPNLFSKLLN----------------ASRKIYKRVIDYHIRYVNSAKNIEELQPYLALFS 67 (91)
T ss_pred hHHHHHHHHHHHHHHHHHhhchhhhhhhhh----------------hhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 556778888888888888888766322111 4556666777777777777777777777777765
Q ss_pred h
Q 017667 364 R 364 (368)
Q Consensus 364 ~ 364 (368)
.
T Consensus 68 ~ 68 (91)
T PF14733_consen 68 N 68 (91)
T ss_pred H
Confidence 3
No 65
>PHA02790 Kelch-like protein; Provisional
Probab=34.43 E-value=39 Score=33.42 Aligned_cols=32 Identities=16% Similarity=0.188 Sum_probs=29.8
Q ss_pred cCChhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 017667 310 VISVNSVAHTLALADRHCAMDLKSVCLKFAAE 341 (368)
Q Consensus 310 ~i~~~n~~~~l~~a~~~~~~~L~~~~~~~i~~ 341 (368)
.|+.+|+..++..|.....+.+++.|.+|+..
T Consensus 87 ~it~~nV~~ll~aA~~Lqi~~v~~~C~~fL~~ 118 (480)
T PHA02790 87 YIDSHNVVNLLRASILTSVEFIIYTCINFILR 118 (480)
T ss_pred EEecccHHHHHHHHHHhChHHHHHHHHHHHHh
Confidence 46889999999999999999999999999984
No 66
>smart00875 BACK BTB And C-terminal Kelch. The BACK domain is found juxtaposed to the BTB domain; they are separated by as little as two residues.
Probab=33.61 E-value=41 Score=24.50 Aligned_cols=25 Identities=24% Similarity=0.087 Sum_probs=21.4
Q ss_pred HHHHHhcccChhHHHHHHHHHHhcc
Q 017667 286 KLLAAAEKYVLPRLRLMCESVLCKV 310 (368)
Q Consensus 286 ~ll~~A~~~~~~~l~~~ce~~l~~~ 310 (368)
+++.+|+.|+.+.|...|..++.++
T Consensus 3 ~i~~~a~~~~~~~L~~~~~~~i~~n 27 (101)
T smart00875 3 GIRRFAELYGLEELLEKALRFILKN 27 (101)
T ss_pred hHHHHHHHhChHHHHHHHHHHHHHH
Confidence 5778899999999999999997754
No 67
>COG3033 TnaA Tryptophanase [Amino acid transport and metabolism]
Probab=29.57 E-value=41 Score=31.71 Aligned_cols=61 Identities=15% Similarity=0.074 Sum_probs=47.2
Q ss_pred CCCHHHHHHHhhhhhcCCCCCCccCCCCCCCCCCCCcHHHHHHHHHHhcccChhHHHHHHH
Q 017667 244 DMEPKVFKALLHFIYKDTLIEDGECSASSSSCVPSVSDTLEAKLLAAAEKYVLPRLRLMCE 304 (368)
Q Consensus 244 ~~~~~~f~~~L~~iY~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~A~~~~~~~l~~~ce 304 (368)
|++.+-++.+++=.=-+.+|..--.....+.|.-.++..++..+.++|++|+++-+.+.|.
T Consensus 168 d~D~~kLe~lidevG~~nvp~I~~tiT~NsagGQpVSm~n~r~v~~ia~ky~ipvv~Da~R 228 (471)
T COG3033 168 NFDLEKLERLIDEVGADNVPYIVLTITNNSAGGQPVSMANMKAVYEIAKKYDIPVVMDAAR 228 (471)
T ss_pred ccCHHHHHHHHHHhCcccCcEEEEEEeccccCCCcchHHhHHHHHHHHHHcCCcEEeehhh
Confidence 7899999999987766666654443444445555699999999999999999988877765
No 68
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a dimerisation domain found at the C-terminal of SKP1 proteins [], as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. This domain is multi-helical in structure, and consists of an interlocked herterodimer in F-box proteins.; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 2P1O_A 3OGL_G 3OGM_A 3C6O_A 2P1N_A 2P1Q_A 3OGK_I 3C6N_A 3C6P_A 2P1P_A ....
Probab=27.44 E-value=1.4e+02 Score=21.17 Aligned_cols=34 Identities=18% Similarity=0.229 Sum_probs=27.1
Q ss_pred cCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhH
Q 017667 310 VISVNSVAHTLALADRHCAMDLKSVCLKFAAENL 343 (368)
Q Consensus 310 ~i~~~n~~~~l~~a~~~~~~~L~~~~~~~i~~~~ 343 (368)
.++.+.+..++.-|...+...|.+.|.++++..+
T Consensus 10 ~~~~~~L~~l~~AA~yL~I~~L~~~~~~~iA~~i 43 (78)
T PF01466_consen 10 DVDNDELFDLLNAANYLDIKGLLDLCCKYIANMI 43 (78)
T ss_dssp -S-HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHH
T ss_pred HcCHHHHHHHHHHHHHHcchHHHHHHHHHHHHHh
Confidence 4577889999999999999999999999988443
No 69
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=23.92 E-value=1.9e+02 Score=29.30 Aligned_cols=32 Identities=22% Similarity=0.256 Sum_probs=29.8
Q ss_pred cCChhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 017667 310 VISVNSVAHTLALADRHCAMDLKSVCLKFAAE 341 (368)
Q Consensus 310 ~i~~~n~~~~l~~a~~~~~~~L~~~~~~~i~~ 341 (368)
.|+.+|+.+++.-|..++...+.+.|.+|+..
T Consensus 101 ~i~~~nVq~ll~aA~~lQi~~v~~~C~~fL~~ 132 (571)
T KOG4441|consen 101 EISEDNVQELLEAASLLQIPEVVDACCEFLES 132 (571)
T ss_pred EechHhHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 46889999999999999999999999999983
No 70
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=22.49 E-value=6.6e+02 Score=24.80 Aligned_cols=87 Identities=14% Similarity=0.095 Sum_probs=65.7
Q ss_pred HHHHHHHHHhcccChhH------HHHHHHHHHhccCChhHHHHHHHHHHhcCC--hHHHHHHHHHHHHhHHHHhccCCCc
Q 017667 282 TLEAKLLAAAEKYVLPR------LRLMCESVLCKVISVNSVAHTLALADRHCA--MDLKSVCLKFAAENLVGMSFQFDLF 353 (368)
Q Consensus 282 ~~~~~ll~~A~~~~~~~------l~~~ce~~l~~~i~~~n~~~~l~~a~~~~~--~~L~~~~~~~i~~~~~~v~~~~~~~ 353 (368)
.....+...++-|++++ |..-+++.....-..+-++.++..+.++.- ...++....|++.-+.+......+.
T Consensus 359 r~yL~lwe~~qs~DiDrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~ 438 (549)
T PF07079_consen 359 RDYLNLWEEIQSYDIDRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIP 438 (549)
T ss_pred HHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 44556777788887753 445555555444457778888888877644 4577788888889999999999999
Q ss_pred cchhHHHHHHhhCCC
Q 017667 354 VLSFLFHFYCRLGFT 368 (368)
Q Consensus 354 ~ls~l~~~~~~~~~~ 368 (368)
+|-.|-+++.+.|.|
T Consensus 439 rLlkLe~fi~e~gl~ 453 (549)
T PF07079_consen 439 RLLKLEDFITEVGLT 453 (549)
T ss_pred HHHHHHHHHHhcCCC
Confidence 999999999999875
Done!