BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 017668
         (368 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1S8O|A Chain A, Human Soluble Epoxide Hydrolase
 pdb|1VJ5|A Chain A, Human Soluble Epoxide Hydrolase- N-Cyclohexyl-N'-(4-
           Iodophenyl)urea Complex
 pdb|1ZD2|P Chain P, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
           Ethanoic Acid Complex
 pdb|1ZD3|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
           Butyric Acid Complex
 pdb|1ZD4|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
           Hexanoic Acid Complex
 pdb|1ZD5|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
           Heptanoic Acid Complex
 pdb|3I1Y|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
 pdb|3I28|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
 pdb|3KOO|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
 pdb|3OTQ|A Chain A, Soluble Epoxide Hydrolase In Complex With Pyrazole
           Antagonist
 pdb|4HAI|A Chain A, Crystal Structure Of Human Soluble Epoxide Hydrolase
           Complexed With N-
           Cycloheptyl-1-(mesitylsulfonyl)piperidine-4-carboxamide
          Length = 555

 Score = 31.6 bits (70), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 13/39 (33%), Positives = 21/39 (53%)

Query: 324 ITRLSQYRKDAHPSEYGGHSDDCSHWCLPGLPDTWNQLM 362
           + ++SQ+ +D  P    GH +DC HW     P   NQ++
Sbjct: 500 VPQMSQHMEDWIPHLKRGHIEDCGHWTQMDKPTEVNQIL 538


>pdb|3ANS|A Chain A, Human Soluble Epoxide Hydrolase In Complex With A
           Synthetic Inhibitor
 pdb|3ANS|B Chain B, Human Soluble Epoxide Hydrolase In Complex With A
           Synthetic Inhibitor
 pdb|3ANT|A Chain A, Human Soluble Epoxide Hydrolase In Complex With A
           Synthetic Inhibitor
 pdb|3ANT|B Chain B, Human Soluble Epoxide Hydrolase In Complex With A
           Synthetic Inhibitor
          Length = 336

 Score = 31.6 bits (70), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 13/39 (33%), Positives = 21/39 (53%)

Query: 324 ITRLSQYRKDAHPSEYGGHSDDCSHWCLPGLPDTWNQLM 362
           + ++SQ+ +D  P    GH +DC HW     P   NQ++
Sbjct: 281 VPQMSQHMEDWIPHLKRGHIEDCGHWTQMDKPTEVNQIL 319


>pdb|3PDC|A Chain A, Crystal Structure Of Hydrolase Domain Of Human Soluble
           Epoxide Hydrolase Complexed With A Benzoxazole Inhibitor
 pdb|3PDC|B Chain B, Crystal Structure Of Hydrolase Domain Of Human Soluble
           Epoxide Hydrolase Complexed With A Benzoxazole Inhibitor
          Length = 344

 Score = 31.2 bits (69), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 13/39 (33%), Positives = 21/39 (53%)

Query: 324 ITRLSQYRKDAHPSEYGGHSDDCSHWCLPGLPDTWNQLM 362
           + ++SQ+ +D  P    GH +DC HW     P   NQ++
Sbjct: 296 VPQMSQHMEDWIPHLKRGHIEDCGHWTQMDKPTEVNQIL 334


>pdb|4HTY|A Chain A, Crystal Structure Of A Metagenome-Derived Cellulase Cel5a
 pdb|4HU0|A Chain A, Crystal Structure Of A Metagenome-Derived Cellulase Cel5a
           In Complex With Cellotetraose
          Length = 359

 Score = 28.9 bits (63), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 32/141 (22%), Positives = 49/141 (34%), Gaps = 21/141 (14%)

Query: 215 HTGRSQPFDYIREGRKLYKDMNRLVAFYK------------GLTTWARWVNFNVDPTKTK 262
           HT + + FD+ R   + Y  +N  VAFY+            G+ TWA W   N +     
Sbjct: 158 HTTKGETFDFWRRVSERYNGINS-VAFYEIFNEPTVFNGRLGIATWAEWKAINEEAITII 216

Query: 263 VFFQGISPTHYEGRDWNEPSKSCSG-----QTKPYFGYKYPAGTPMPWVVLQKV---FSR 314
                 +     G +W    K  +      Q   Y  + YP     P+    +    F  
Sbjct: 217 QAHNPKAIALVAGFNWAYDLKEAAANPIDRQNIAYVSHPYPQKVGAPYQANWERDFGFXA 276

Query: 315 LRKPVYLLDITRLSQYRKDAH 335
            + PV+  +I       K AH
Sbjct: 277 DKYPVFATEIGYQRATDKGAH 297


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.140    0.477 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,255,579
Number of Sequences: 62578
Number of extensions: 504402
Number of successful extensions: 1056
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1053
Number of HSP's gapped (non-prelim): 4
length of query: 368
length of database: 14,973,337
effective HSP length: 100
effective length of query: 268
effective length of database: 8,715,537
effective search space: 2335763916
effective search space used: 2335763916
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.6 bits)