BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 017669
         (368 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q2RIS7|HPPA1_MOOTA Putative K(+)-stimulated pyrophosphate-energized sodium pump
           OS=Moorella thermoacetica (strain ATCC 39073) GN=hppA1
           PE=1 SV=1
          Length = 672

 Score = 34.3 bits (77), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 27/98 (27%), Positives = 50/98 (51%), Gaps = 10/98 (10%)

Query: 164 GWFYVSVRMGFFLWVALLNLITISSTW---ARV--IDVMDSELFGSLFAAGMAFLGPYLL 218
           G    ++  GF +  A L  + + S +   AR+  ID+ D ++ G LF  GM    P+  
Sbjct: 451 GNTTAAIGKGFAIGSAALTALALFSAYTAAARITAIDLTDPKVVGGLFIGGML---PF-- 505

Query: 219 LFAACLMELAAQSSKGIYKEIPRRPEELPPLRKADSDP 256
           LFAA  M+   +++  + +E+ R+ + +P L +  + P
Sbjct: 506 LFAALTMKAVGRAAFQMIEEVRRQFKSIPGLMEGKARP 543


>sp|Q8RHJ2|HPPA_FUSNN Putative K(+)-stimulated pyrophosphate-energized sodium pump
           OS=Fusobacterium nucleatum subsp. nucleatum (strain ATCC
           25586 / CIP 101130 / JCM 8532 / LMG 13131) GN=hppA PE=3
           SV=1
          Length = 671

 Score = 33.1 bits (74), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 5/69 (7%)

Query: 188 STWARVIDVMDSELFGSLFAAGMAFLGPYLLLFAACLMELAAQSSKGIYKEIPRRPEELP 247
           ++ A VIDV D E+   LF  GM        LF+A  M    +++  + +E+ R+  E P
Sbjct: 480 TSEALVIDVTDPEVIAGLFIGGM-----LTFLFSALTMTAVGKAAIEMVEEVRRQFREFP 534

Query: 248 PLRKADSDP 256
            +      P
Sbjct: 535 GIMDRTQKP 543


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.325    0.136    0.399 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 119,310,654
Number of Sequences: 539616
Number of extensions: 4506826
Number of successful extensions: 18217
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 18212
Number of HSP's gapped (non-prelim): 15
length of query: 368
length of database: 191,569,459
effective HSP length: 119
effective length of query: 249
effective length of database: 127,355,155
effective search space: 31711433595
effective search space used: 31711433595
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 62 (28.5 bits)