Query 017669
Match_columns 368
No_of_seqs 105 out of 161
Neff 5.2
Searched_HMMs 46136
Date Fri Mar 29 02:24:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017669.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017669hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00769 AAA ADP/ATP carrier 100.0 9.7E-59 2.1E-63 475.8 27.6 296 22-367 1-332 (472)
2 COG3202 ATP/ADP translocase [E 100.0 3.9E-51 8.5E-56 416.7 24.7 316 8-367 7-351 (509)
3 PF03219 TLC: TLC ATP/ADP tran 100.0 7.9E-51 1.7E-55 419.1 25.0 313 9-367 5-348 (491)
4 TIGR00900 2A0121 H+ Antiporter 98.1 0.0038 8.3E-08 58.9 25.6 44 60-105 33-76 (365)
5 PRK11195 lysophospholipid tran 98.0 0.0052 1.1E-07 61.2 26.2 48 59-108 36-83 (393)
6 PF05977 MFS_3: Transmembrane 97.8 0.0073 1.6E-07 63.8 24.8 214 66-366 50-282 (524)
7 TIGR00893 2A0114 d-galactonate 97.8 0.0077 1.7E-07 56.8 22.4 50 50-103 20-69 (399)
8 PRK15402 multidrug efflux syst 97.8 0.023 4.9E-07 56.1 25.9 79 26-106 11-91 (406)
9 PRK09874 drug efflux system pr 97.8 0.045 9.9E-07 53.3 27.7 71 31-103 17-94 (408)
10 TIGR00881 2A0104 phosphoglycer 97.8 0.0052 1.1E-07 58.1 20.0 53 50-106 21-73 (379)
11 PF07690 MFS_1: Major Facilita 97.7 0.005 1.1E-07 57.9 19.7 70 35-106 3-75 (352)
12 PRK09528 lacY galactoside perm 97.7 0.0073 1.6E-07 60.1 20.8 70 31-104 13-87 (420)
13 TIGR00710 efflux_Bcr_CflA drug 97.7 0.046 9.9E-07 52.5 25.4 64 38-103 15-80 (385)
14 PRK11128 putative 3-phenylprop 97.6 0.026 5.5E-07 55.6 23.6 61 29-93 5-69 (382)
15 PF01306 LacY_symp: LacY proto 97.6 0.019 4E-07 59.4 22.7 77 290-367 212-288 (412)
16 TIGR00882 2A0105 oligosacchari 97.6 0.034 7.3E-07 54.8 23.7 69 33-105 7-80 (396)
17 PRK11652 emrD multidrug resist 97.6 0.071 1.5E-06 52.3 25.8 76 26-103 6-83 (394)
18 PRK10504 putative transporter; 97.5 0.086 1.9E-06 53.1 25.9 81 26-108 8-90 (471)
19 PRK10473 multidrug efflux syst 97.5 0.11 2.5E-06 50.8 25.8 70 32-103 7-78 (392)
20 TIGR00897 2A0118 polyol permea 97.5 0.12 2.6E-06 51.2 26.0 76 29-108 14-93 (402)
21 PRK11102 bicyclomycin/multidru 97.3 0.13 2.9E-06 49.6 23.6 44 59-104 24-67 (377)
22 TIGR00712 glpT glycerol-3-phos 97.3 0.065 1.4E-06 53.9 22.2 44 58-103 58-101 (438)
23 PRK11273 glpT sn-glycerol-3-ph 97.3 0.075 1.6E-06 53.7 22.4 46 60-107 62-107 (452)
24 PRK06814 acylglycerophosphoeth 97.3 0.065 1.4E-06 60.5 23.8 75 286-364 213-287 (1140)
25 PRK10054 putative transporter; 97.3 0.15 3.2E-06 50.9 23.8 75 27-103 6-83 (395)
26 PRK03545 putative arabinose tr 97.2 0.24 5.2E-06 48.7 26.7 63 42-106 23-87 (390)
27 PRK08633 2-acyl-glycerophospho 97.2 0.086 1.9E-06 59.1 24.1 35 67-103 53-87 (1146)
28 PRK11902 ampG muropeptide tran 97.2 0.091 2E-06 52.0 21.5 77 286-366 197-274 (402)
29 PRK11663 regulatory protein Uh 97.1 0.32 6.9E-06 49.0 24.7 55 47-105 46-100 (434)
30 PRK10489 enterobactin exporter 97.1 0.17 3.7E-06 50.2 22.2 77 24-104 16-93 (417)
31 TIGR00901 2A0125 AmpG-related 97.0 0.2 4.4E-06 48.2 21.7 77 286-366 194-273 (356)
32 TIGR00886 2A0108 nitrite extru 97.0 0.33 7.2E-06 46.4 25.6 73 33-107 6-81 (366)
33 PRK09556 uhpT sugar phosphate 97.0 0.45 9.7E-06 48.4 25.0 55 48-106 53-107 (467)
34 PRK11646 multidrug resistance 97.0 0.48 1E-05 47.3 25.3 74 33-108 15-91 (400)
35 TIGR00895 2A0115 benzoate tran 97.0 0.098 2.1E-06 50.0 18.6 76 26-103 15-92 (398)
36 PRK10213 nepI ribonucleoside t 96.9 0.52 1.1E-05 46.9 27.1 73 34-108 26-100 (394)
37 TIGR00890 2A0111 Oxalate/Forma 96.9 0.41 8.8E-06 45.2 23.1 54 46-103 25-78 (377)
38 TIGR00891 2A0112 putative sial 96.8 0.53 1.1E-05 45.3 22.8 78 24-103 8-87 (405)
39 PRK11010 ampG muropeptide tran 96.8 0.87 1.9E-05 47.2 25.3 75 288-366 212-287 (491)
40 PRK12307 putative sialic acid 96.7 0.69 1.5E-05 45.6 25.2 61 43-107 37-97 (426)
41 TIGR00902 2A0127 phenyl propri 96.6 0.91 2E-05 44.7 25.0 73 290-367 197-269 (382)
42 PRK11043 putative transporter; 96.4 1.1 2.4E-05 43.9 26.1 64 36-103 14-81 (401)
43 PRK11551 putative 3-hydroxyphe 96.3 1.2 2.6E-05 43.7 24.3 52 48-103 39-90 (406)
44 TIGR00711 efflux_EmrB drug res 96.1 1.7 3.7E-05 43.5 24.4 72 31-104 5-78 (485)
45 PLN00028 nitrate transmembrane 96.1 2 4.4E-05 44.1 27.0 82 20-103 28-111 (476)
46 TIGR00792 gph sugar (Glycoside 96.1 0.46 9.9E-06 46.9 17.4 76 286-366 210-285 (437)
47 TIGR02332 HpaX 4-hydroxyphenyl 96.0 1.5 3.2E-05 44.0 20.8 51 49-103 33-83 (412)
48 TIGR00896 CynX cyanate transpo 96.0 1.6 3.5E-05 42.0 21.1 53 47-103 23-75 (355)
49 PRK10133 L-fucose transporter; 95.9 2.4 5.2E-05 43.2 24.9 83 26-110 24-108 (438)
50 TIGR00805 oat sodium-independe 95.8 0.55 1.2E-05 50.7 18.0 78 286-366 318-395 (633)
51 PRK12382 putative transporter; 95.8 2.1 4.5E-05 41.9 21.7 74 30-107 17-95 (392)
52 TIGR00898 2A0119 cation transp 95.8 0.069 1.5E-06 54.2 10.5 54 48-103 113-167 (505)
53 PRK15403 multidrug efflux syst 95.7 2.7 6E-05 42.2 25.2 45 60-106 50-94 (413)
54 TIGR00899 2A0120 sugar efflux 95.6 2.2 4.8E-05 40.8 24.5 58 37-98 6-68 (375)
55 TIGR01299 synapt_SV2 synaptic 95.3 6.3 0.00014 43.8 27.6 54 46-103 189-242 (742)
56 TIGR00892 2A0113 monocarboxyla 95.1 4.6 9.9E-05 41.2 24.5 51 49-103 44-94 (455)
57 PF05977 MFS_3: Transmembrane 95.0 3 6.4E-05 44.4 19.9 78 26-107 219-298 (524)
58 TIGR00879 SP MFS transporter, 94.9 1.5 3.2E-05 42.7 16.1 45 60-106 70-114 (481)
59 PRK10429 melibiose:sodium symp 94.4 5.1 0.00011 41.0 19.4 76 286-366 219-294 (473)
60 PRK14995 methyl viologen resis 94.4 7.2 0.00016 40.2 26.8 77 31-109 9-87 (495)
61 TIGR00889 2A0110 nucleoside tr 94.3 6.6 0.00014 39.6 22.4 38 59-98 36-74 (418)
62 PRK09848 glucuronide transport 94.3 4 8.7E-05 41.1 18.1 77 286-366 216-292 (448)
63 PRK10091 MFS transport protein 94.3 5.9 0.00013 38.9 25.7 70 36-107 11-82 (382)
64 PRK09669 putative symporter Ya 94.2 2.8 6E-05 42.2 16.8 71 286-366 217-292 (444)
65 PRK03893 putative sialic acid 94.0 7.6 0.00016 39.2 22.7 76 26-103 18-95 (496)
66 PRK03699 putative transporter; 93.7 7.9 0.00017 38.2 24.6 76 26-103 5-82 (394)
67 TIGR00883 2A0106 metabolite-pr 93.6 6.8 0.00015 37.1 18.5 34 70-105 44-77 (394)
68 PRK10489 enterobactin exporter 93.4 5.4 0.00012 39.5 16.9 39 60-100 258-296 (417)
69 TIGR00894 2A0114euk Na(+)-depe 93.4 6.4 0.00014 39.7 17.6 39 63-103 78-116 (465)
70 PRK03633 putative MFS family t 92.0 13 0.00028 36.4 26.8 74 30-105 8-83 (381)
71 KOG3764 Vesicular amine transp 92.0 0.91 2E-05 47.4 9.4 44 290-333 262-305 (464)
72 PF13347 MFS_2: MFS/sugar tran 91.9 0.75 1.6E-05 46.1 8.7 76 286-366 213-288 (428)
73 PRK11551 putative 3-hydroxyphe 90.9 10 0.00022 37.1 15.3 38 61-100 255-292 (406)
74 cd06174 MFS The Major Facilita 90.8 13 0.00029 34.3 21.5 68 35-104 6-75 (352)
75 PRK09952 shikimate transporter 90.6 11 0.00025 38.0 15.7 27 71-99 296-322 (438)
76 PRK11462 putative transporter; 90.4 23 0.0005 36.4 22.2 71 286-366 216-291 (460)
77 TIGR00883 2A0106 metabolite-pr 89.8 7.3 0.00016 36.9 12.8 66 30-99 221-291 (394)
78 TIGR00903 2A0129 major facilit 89.5 24 0.00052 35.2 24.0 54 46-103 13-66 (368)
79 PRK10406 alpha-ketoglutarate t 89.4 17 0.00036 36.5 15.7 34 63-98 281-314 (432)
80 COG2814 AraJ Arabinose efflux 89.4 29 0.00063 36.0 25.8 88 23-112 8-97 (394)
81 PRK09705 cynX putative cyanate 88.6 27 0.00058 34.6 23.5 59 48-110 33-91 (393)
82 PRK05122 major facilitator sup 88.5 26 0.00056 34.2 16.8 44 59-104 247-290 (399)
83 TIGR00892 2A0113 monocarboxyla 88.2 14 0.00031 37.6 14.4 28 59-86 274-301 (455)
84 PRK03893 putative sialic acid 87.1 18 0.00039 36.5 14.4 39 59-99 309-347 (496)
85 TIGR00880 2_A_01_02 Multidrug 87.0 12 0.00026 29.6 10.6 33 70-104 7-39 (141)
86 TIGR00885 fucP L-fucose:H+ sym 87.0 37 0.00079 34.3 27.3 79 29-109 4-84 (410)
87 PRK05122 major facilitator sup 87.0 32 0.00069 33.6 23.3 74 28-105 15-93 (399)
88 COG2211 MelB Na+/melibiose sym 86.7 11 0.00023 40.0 12.7 53 49-103 253-312 (467)
89 PRK11902 ampG muropeptide tran 86.2 25 0.00055 34.7 14.6 42 60-103 244-286 (402)
90 TIGR01301 GPH_sucrose GPH fami 86.0 50 0.0011 34.9 22.0 51 49-103 29-83 (477)
91 PF03825 Nuc_H_symport: Nucleo 85.9 44 0.00095 34.2 25.4 73 291-367 200-272 (400)
92 PF07690 MFS_1: Major Facilita 85.4 2.9 6.3E-05 39.2 7.1 71 30-103 211-283 (352)
93 COG2211 MelB Na+/melibiose sym 85.3 55 0.0012 34.8 19.0 76 286-366 224-300 (467)
94 TIGR01299 synapt_SV2 synaptic 83.9 15 0.00032 41.0 12.7 33 69-103 603-635 (742)
95 PF11700 ATG22: Vacuole efflux 82.1 58 0.0013 34.3 15.8 39 63-103 319-359 (477)
96 TIGR00879 SP MFS transporter, 80.6 31 0.00068 33.5 12.4 37 65-103 323-359 (481)
97 PF13347 MFS_2: MFS/sugar tran 79.7 16 0.00036 36.5 10.4 46 63-110 262-307 (428)
98 KOG3626 Organic anion transpor 79.6 14 0.00031 41.2 10.6 77 286-366 380-457 (735)
99 TIGR00899 2A0120 sugar efflux 79.3 59 0.0013 31.0 14.5 27 72-100 246-272 (375)
100 PRK09952 shikimate transporter 77.4 85 0.0018 31.7 18.9 36 69-106 72-107 (438)
101 PRK15011 sugar efflux transpor 77.1 79 0.0017 31.2 15.3 34 63-98 254-287 (393)
102 TIGR00890 2A0111 Oxalate/Forma 76.9 31 0.00068 32.4 10.9 39 63-103 242-280 (377)
103 TIGR00898 2A0119 cation transp 76.7 69 0.0015 32.5 14.0 34 68-103 362-395 (505)
104 PRK11273 glpT sn-glycerol-3-ph 76.5 78 0.0017 32.0 14.3 25 65-91 293-317 (452)
105 PRK12307 putative sialic acid 76.1 52 0.0011 32.4 12.6 35 63-99 268-302 (426)
106 PRK09528 lacY galactoside perm 75.7 51 0.0011 32.7 12.5 41 60-102 261-301 (420)
107 TIGR00895 2A0115 benzoate tran 75.6 75 0.0016 30.2 13.2 33 61-95 285-317 (398)
108 PRK10504 putative transporter; 75.6 93 0.002 31.2 14.6 40 62-103 298-337 (471)
109 TIGR00900 2A0121 H+ Antiporter 74.5 62 0.0013 30.3 12.2 39 59-99 245-283 (365)
110 PRK10642 proline/glycine betai 72.2 1.2E+02 0.0026 31.1 16.5 32 67-100 292-323 (490)
111 PRK09669 putative symporter Ya 71.4 56 0.0012 32.9 11.8 37 66-104 269-305 (444)
112 TIGR02718 sider_RhtX_FptX side 70.5 1.1E+02 0.0024 29.9 26.1 73 290-366 200-272 (390)
113 cd06174 MFS The Major Facilita 69.8 92 0.002 28.7 13.5 41 61-103 211-252 (352)
114 PRK11010 ampG muropeptide tran 68.8 1.5E+02 0.0032 30.7 17.6 38 59-98 256-294 (491)
115 PF03209 PUCC: PUCC protein; 68.1 1.5E+02 0.0032 31.1 14.0 73 286-363 196-269 (403)
116 TIGR00792 gph sugar (Glycoside 67.8 40 0.00087 33.2 9.7 39 64-104 260-298 (437)
117 KOG2816 Predicted transporter 67.4 1.6E+02 0.0036 31.0 14.5 33 70-104 71-103 (463)
118 PLN00028 nitrate transmembrane 65.1 37 0.00081 34.9 9.1 28 64-93 291-318 (476)
119 TIGR00710 efflux_Bcr_CflA drug 65.0 1.3E+02 0.0028 28.6 15.8 46 61-108 242-287 (385)
120 PRK10207 dipeptide/tripeptide 64.6 33 0.00071 35.8 8.7 75 28-106 14-94 (489)
121 PRK10429 melibiose:sodium symp 64.5 46 0.00099 34.1 9.6 35 68-104 273-307 (473)
122 PRK09584 tppB putative tripept 64.2 1.9E+02 0.0041 30.2 19.8 72 29-104 22-99 (500)
123 PRK10642 proline/glycine betai 63.8 1.8E+02 0.0039 29.8 23.0 41 67-109 63-103 (490)
124 PRK03633 putative MFS family t 63.7 1.5E+02 0.0033 28.9 15.3 40 62-103 236-275 (381)
125 PRK08633 2-acyl-glycerophospho 63.7 2.6E+02 0.0057 31.7 16.3 40 62-103 270-309 (1146)
126 PRK15075 citrate-proton sympor 61.9 1.8E+02 0.0039 29.2 24.3 85 20-106 5-99 (434)
127 PRK10406 alpha-ketoglutarate t 59.6 1.9E+02 0.0042 28.8 24.1 39 66-106 68-106 (432)
128 PF05631 DUF791: Protein of un 59.2 2.2E+02 0.0047 29.3 17.4 45 282-326 228-272 (354)
129 KOG0255 Synaptic vesicle trans 58.8 1.2E+02 0.0026 31.2 11.5 52 290-341 310-361 (521)
130 PRK09874 drug efflux system pr 58.7 1.8E+02 0.0039 28.2 15.6 30 71-102 268-297 (408)
131 KOG1330 Sugar transporter/spin 58.4 17 0.00037 38.7 5.2 76 285-360 231-309 (493)
132 TIGR00893 2A0114 d-galactonate 58.1 1.6E+02 0.0035 27.5 12.6 32 61-94 251-282 (399)
133 PRK12382 putative transporter; 57.9 1.9E+02 0.0041 28.2 15.1 36 68-105 256-291 (392)
134 PTZ00207 hypothetical protein; 56.7 3E+02 0.0065 30.1 15.7 55 47-106 50-104 (591)
135 TIGR00891 2A0112 putative sial 56.6 80 0.0017 30.2 9.3 39 60-100 273-311 (405)
136 PRK06814 acylglycerophosphoeth 55.5 2.7E+02 0.0059 31.8 14.7 67 29-99 229-297 (1140)
137 PRK10473 multidrug efflux syst 53.0 2.3E+02 0.0049 27.6 15.5 42 62-105 240-281 (392)
138 PRK15075 citrate-proton sympor 51.5 2.6E+02 0.0057 27.9 14.9 35 63-99 276-310 (434)
139 PRK11462 putative transporter; 51.5 1.2E+02 0.0025 31.3 10.0 67 291-357 94-166 (460)
140 PF12832 MFS_1_like: MFS_1 lik 50.8 78 0.0017 24.9 6.8 71 31-103 3-75 (77)
141 TIGR02718 sider_RhtX_FptX side 48.4 2.7E+02 0.0059 27.2 13.9 42 59-102 241-283 (390)
142 PRK10077 xylE D-xylose transpo 48.3 57 0.0012 32.6 7.1 45 61-107 55-99 (479)
143 PF06609 TRI12: Fungal trichot 47.8 1.3E+02 0.0028 33.0 10.0 62 38-101 51-116 (599)
144 KOG0569 Permease of the major 47.6 3.2E+02 0.0069 29.2 12.7 76 40-117 282-359 (485)
145 COG5487 Small integral membran 46.7 15 0.00032 27.7 1.9 20 172-194 33-52 (54)
146 TIGR00881 2A0104 phosphoglycer 46.4 1.8E+02 0.0038 27.3 9.7 33 61-95 252-284 (379)
147 TIGR00896 CynX cyanate transpo 46.1 1.7E+02 0.0036 28.1 9.7 37 60-98 231-268 (355)
148 PRK09848 glucuronide transport 45.5 1.2E+02 0.0025 30.6 8.8 34 71-106 274-307 (448)
149 TIGR00901 2A0125 AmpG-related 44.1 1.4E+02 0.003 28.6 8.8 42 60-103 243-285 (356)
150 PRK10983 putative inner membra 44.0 1.1E+02 0.0024 31.1 8.4 51 31-96 15-65 (368)
151 PF03137 OATP: Organic Anion T 43.9 7.6 0.00016 41.4 0.0 78 286-367 293-371 (539)
152 PRK15011 sugar efflux transpor 43.8 3.3E+02 0.0071 26.8 24.1 44 50-97 42-85 (393)
153 PRK03545 putative arabinose tr 42.4 3.3E+02 0.0073 26.5 14.9 34 60-95 240-273 (390)
154 PRK03699 putative transporter; 41.6 3.5E+02 0.0076 26.5 14.0 68 30-101 207-279 (394)
155 PRK11102 bicyclomycin/multidru 41.5 3.2E+02 0.007 26.1 15.7 42 60-103 229-270 (377)
156 PRK10077 xylE D-xylose transpo 40.6 3.9E+02 0.0083 26.7 16.7 41 68-110 313-353 (479)
157 TIGR00711 efflux_EmrB drug res 40.5 1.8E+02 0.0039 29.0 9.2 36 63-100 293-328 (485)
158 PRK11195 lysophospholipid tran 40.3 3.8E+02 0.0082 26.5 15.5 35 62-98 242-276 (393)
159 PRK15034 nitrate/nitrite trans 38.8 5E+02 0.011 27.4 26.3 74 28-103 34-110 (462)
160 PRK09556 uhpT sugar phosphate 37.4 3.9E+02 0.0084 27.1 11.2 34 65-100 298-331 (467)
161 PRK09705 cynX putative cyanate 36.8 2.6E+02 0.0057 27.6 9.7 39 60-100 239-277 (393)
162 COG3389 Uncharacterized protei 36.7 2.4E+02 0.0053 27.7 8.8 33 72-106 39-71 (277)
163 TIGR00924 yjdL_sub1_fam amino 36.3 1.6E+02 0.0034 30.5 8.3 71 33-105 15-91 (475)
164 PRK14995 methyl viologen resis 34.8 2.4E+02 0.0051 29.1 9.3 29 70-100 304-332 (495)
165 PF03806 ABG_transport: AbgT p 34.7 2.3E+02 0.0051 30.5 9.3 144 21-200 248-414 (502)
166 PRK11043 putative transporter; 32.9 4.7E+02 0.01 25.4 15.9 46 62-109 239-284 (401)
167 KOG0253 Synaptic vesicle trans 31.9 6.7E+02 0.015 26.9 15.8 39 62-102 114-152 (528)
168 COG2814 AraJ Arabinose efflux 30.4 6.4E+02 0.014 26.3 15.6 76 31-110 214-293 (394)
169 TIGR00886 2A0108 nitrite extru 30.4 2.2E+02 0.0047 27.0 7.6 36 66-103 266-301 (366)
170 TIGR00902 2A0127 phenyl propri 28.2 3.6E+02 0.0078 26.4 9.0 42 61-104 240-281 (382)
171 PRK11663 regulatory protein Uh 28.0 6.2E+02 0.013 25.3 13.4 21 68-90 286-306 (434)
172 PF05360 YiaAB: yiaA/B two hel 27.2 83 0.0018 23.4 3.3 35 18-52 19-53 (53)
173 TIGR00887 2A0109 phosphate:H+ 27.0 7E+02 0.015 25.6 12.5 26 73-100 347-372 (502)
174 PRK15402 multidrug efflux syst 26.6 6.1E+02 0.013 24.7 16.5 42 64-107 254-295 (406)
175 COG3114 CcmD Heme exporter pro 26.3 29 0.00062 27.3 0.6 10 171-180 14-23 (67)
176 PF13150 DUF3989: Protein of u 26.2 1.1E+02 0.0024 25.1 4.1 44 10-53 9-53 (85)
177 PRK10091 MFS transport protein 24.1 6.7E+02 0.015 24.4 14.7 44 60-105 234-277 (382)
178 KOG2615 Permease of the major 23.8 9E+02 0.02 25.8 14.9 70 42-117 47-118 (451)
179 COG0628 yhhT Predicted permeas 22.6 5.6E+02 0.012 25.4 9.2 62 34-110 20-82 (355)
180 PF14150 YesK: YesK-like prote 22.4 2.8E+02 0.006 22.7 5.7 49 299-357 2-50 (81)
181 TIGR00887 2A0109 phosphate:H+ 22.4 8.5E+02 0.018 24.9 23.2 37 65-103 60-96 (502)
182 PF10410 DnaB_bind: DnaB-helic 22.3 2.2E+02 0.0049 20.4 4.8 52 316-367 1-54 (59)
183 TIGR00882 2A0105 oligosacchari 22.3 3.6E+02 0.0079 26.3 7.7 42 61-104 254-295 (396)
184 PRK05208 hypothetical protein; 22.1 4.8E+02 0.01 24.1 7.9 24 292-316 11-34 (168)
185 TIGR00903 2A0129 major facilit 22.0 7.8E+02 0.017 24.4 14.8 23 178-200 290-312 (368)
186 PF06963 FPN1: Ferroportin1 (F 21.4 9.5E+02 0.021 25.2 18.0 76 287-368 248-323 (432)
187 TIGR00889 2A0110 nucleoside tr 20.9 8.6E+02 0.019 24.4 15.6 43 61-105 251-293 (418)
No 1
>TIGR00769 AAA ADP/ATP carrier protein family. These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.
Probab=100.00 E-value=9.7e-59 Score=475.77 Aligned_cols=296 Identities=15% Similarity=0.166 Sum_probs=245.9
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHhhhhhhhhhhhh---ccCcCcchhHHHHH-HHHHHHHHHHHHHhhcCCCCcchhHHH
Q 017669 22 LHPHETSALLHSSSCFFFILSAYFVVLPLRDEGAI---SLGLSKLPGLFVGS-LILTLIAAPVSTLIFSLPNLSKAKALV 97 (368)
Q Consensus 22 i~~~E~~~~l~~~l~fF~il~aYyiLRPvRD~l~v---~~G~e~Lp~Lf~~t-~~~~l~~~ply~~l~~~~r~sr~r~~~ 97 (368)
|||+|.|++++++++||||+++|++|||+||++++ ++|+|+|||+|+.+ +|++++++|+|+|+++ |+||+|+++
T Consensus 1 ~~~~E~~k~~~~~l~fF~il~~Y~iLR~lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~--~~~~~~lf~ 78 (472)
T TIGR00769 1 IEVHELKKFLPLFLMFFCILFNYTILRDTKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSN--ILSKEALFY 78 (472)
T ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHhhhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHh--cCCHHHhHH
Confidence 69999999999999999999999999999999999 56999999999555 6777777999999999 999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccccchhhhhhhchhhccccCCCCCcchhcccCCCCCCcccccccccccccceeeehh
Q 017669 98 LIHRFFSVSLLVFFLLWQSSSIGYLSKLESVSHLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLW 177 (368)
Q Consensus 98 ~~~~fF~~~LL~F~~l~~~~~~~y~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~w~~r~W~y~~v~~~FyVW 177 (368)
++|++|+++++ +|.+.. | | ++|.+||+...|.+++.+|.+++| ++-+.|+|.| ++||||
T Consensus 79 ~~~~~F~~~f~----lF~~vl--~--p--------~~~~~~p~~~~~~~~~~~~~~~~~-~i~~~~~W~~----~~FYv~ 137 (472)
T TIGR00769 79 TVISPFLGFFA----LFAFVI--Y--P--------LSDLLHPTALADKLLSLLPPGFMG-FIAILRIWSF----ALFYVM 137 (472)
T ss_pred HHHHHHHHHHH----HHHHHH--h--c--------chhhcCCcHHHHHHHhhcchhhHH-HHHHHhhhhH----HHHHHH
Confidence 99999955554 444442 1 3 567888888888888889988887 3446699998 999999
Q ss_pred HHHHHHHHHH-HHHHHHHHhhChh----hHHHHHHHHHH--HHhH-------------------H------HHHHHHHHH
Q 017669 178 VALLNLITIS-STWARVIDVMDSE----LFGSLFAAGMA--FLGP-------------------Y------LLLFAACLM 225 (368)
Q Consensus 178 vsVfnL~~iS-lFWs~~~dvf~~~----LfG~i~ag~~a--~lG~-------------------~------LLlvaa~lL 225 (368)
++++|++++| +||++|||+++.| +||++++|+.. ++|+ + |++++++++
T Consensus 138 ~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~ 217 (472)
T TIGR00769 138 AELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFSKLRASLGPGVDGWHVSLKNLMVIVICSG 217 (472)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccChHHHHHHHHHHHHHHHH
Confidence 9999999999 9999999999999 88887777663 4432 2 556666666
Q ss_pred HHHHHHHHHHhhhccCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCcccchHhHHHHHhhchhHHHHHH
Q 017669 226 ELAAQSSKGIYKEIPRRPEELPPLRKADSDPRSGADGQTAPAAKVPSPRSSTSIVKPHLWAILDGLRLIFSSNYLLSVSL 305 (368)
Q Consensus 226 ~la~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~g~~~i~rSpYLl~Ial 305 (368)
++++.|.+++.|+.. + +|+.. +.+ + .+||++.|++++||+++++|||||++||+
T Consensus 218 ~~~~~~~~~l~~~~~-----------~--~~~~~-~~~-----------~-~~~k~k~k~~~~es~k~i~~S~yL~~ia~ 271 (472)
T TIGR00769 218 LAIILLYWWVNRNVL-----------T--DPRSY-NPA-----------L-KEKKVKPKMSTMESLKFLVSSPYILDLAL 271 (472)
T ss_pred HHHHHHHHHHHhccc-----------C--Ccccc-chh-----------h-ccccCCCCCCHHHHHHHHHhCHHHHHHHH
Confidence 666666555544321 1 22222 111 0 12233449999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcC
Q 017669 306 FLWLSAVVSSFFYFQKVTVIAMTVSSSLGRRRLLAEINSFIAVFILAGQLTLTGTSFLLLGL 367 (368)
Q Consensus 306 ~v~l~~~vst~lyf~~~~~v~~~~~d~~~rt~ffa~i~~~v~v~tl~~QlflTgrii~~~Gv 367 (368)
++++|++++|++|++||+++++.+||++||++|||++|+++|++|+++|++. +|++||+|.
T Consensus 272 ~vi~y~~~~nlve~~~k~~v~~~~p~~~~~~~f~g~~~~~~gi~tl~~~l~~-~~l~~~~Gw 332 (472)
T TIGR00769 272 LVIAYGISINLVEVTWKSKLKAQYPSPNEYSAFMGDFSTWTGVVSVTMMLLS-GNVIRKYGW 332 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhH
Confidence 9999999999999999999999999999999999999999999999999999 999999995
No 2
>COG3202 ATP/ADP translocase [Energy production and conversion]
Probab=100.00 E-value=3.9e-51 Score=416.73 Aligned_cols=316 Identities=18% Similarity=0.182 Sum_probs=272.9
Q ss_pred hhhhhhHHHhhhhccCCCchhHHHHHHHHHHHHHHHHhhhhhhhhhhhhc-cCcCcchhHH-HHHHHHHHHHHHHHHHhh
Q 017669 8 SKSRLDAFASVFVTLHPHETSALLHSSSCFFFILSAYFVVLPLRDEGAIS-LGLSKLPGLF-VGSLILTLIAAPVSTLIF 85 (368)
Q Consensus 8 ~~~~~~~~~~~~~~i~~~E~~~~l~~~l~fF~il~aYyiLRPvRD~l~v~-~G~e~Lp~Lf-~~t~~~~l~~~ply~~l~ 85 (368)
.+.+-++.-+++||||++|.+|++|+++++|||+++|+++|++||+++++ .|+|++||+| |+.+|++++++++|+|+.
T Consensus 7 ~~~~~~k~~~~~wpi~r~E~~kflpl~Ll~f~I~~ny~~lR~lKDslvv~~~gae~I~FlK~~~vlP~avif~~iy~kl~ 86 (509)
T COG3202 7 EEKYFSKLRSRLWPIRRYELKKFLPLALLFFCILFNYNLLRSLKDSLVVTRQGAESISFLKTWGVLPSAVIFTIIYQKLL 86 (509)
T ss_pred cccccccchheeeeccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheEeecCcchhhHHHHHHHhchHHHHHHHHHHHHH
Confidence 44566788889999999999999999999999999999999999999996 7999999999 999999999999999999
Q ss_pred cCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhhcccccchhhhhhhchhhccccC-CCCCcchhcccCCCCCCccccccc
Q 017669 86 SLPNLSKAKALVLIHRFFSVSLLVFFLLWQSSSIGYLSKLESVSHLESLDAVSSN-AKEDPKAAVDQGSTANSADWGDHG 164 (368)
Q Consensus 86 ~~~r~sr~r~~~~~~~fF~~~LL~F~~l~~~~~~~y~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~w~~r~ 164 (368)
+ +++|+|+++.++++| +.||+||+++.. | .+|.+||+ ...+++++.+|.++++ ++-+.++
T Consensus 87 ~--~lt~~~vF~~~~~~F----~~fF~LFa~Vi~----P--------~~~~~hp~~~~~~~~~~~~p~~l~~-~ili~~~ 147 (509)
T COG3202 87 N--ILTREKVFYIILGFF----LGFFALFAFVIY----P--------YKDILHPDPEFSRDLFADLPMFLKW-FILIVGE 147 (509)
T ss_pred h--hcCHHHHHHHHHHHH----HHHHHHHHHHHh----c--------cccccCCCHHHHHHHHhhCCcccee-eeEeecc
Confidence 9 999999999999999 999999999852 5 78999999 8888999999988777 6667799
Q ss_pred ccccccceeeehhHHHHHHHHHH-HHHHHHHHhhChh-------hHHHHHHHHHHHHhH---H---------------HH
Q 017669 165 WFYVSVRMGFFLWVALLNLITIS-STWARVIDVMDSE-------LFGSLFAAGMAFLGP---Y---------------LL 218 (368)
Q Consensus 165 W~y~~v~~~FyVWvsVfnL~~iS-lFWs~~~dvf~~~-------LfG~i~ag~~a~lG~---~---------------LL 218 (368)
|+| ++||+|..+.+.+++| +||+|+||+++.| +||.++..++...|. + ++
T Consensus 148 Ws~----s~~Yi~aELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~k~~~~~~~~~~~~~~ 223 (509)
T COG3202 148 WSY----SLFYIMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWLSKHRDALASEFKDLLL 223 (509)
T ss_pred hHH----HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhchhhHhHHHHHHHH
Confidence 999 9999988888888999 9999999999999 777755544433231 0 33
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCcccchHhHHHHHhhch
Q 017669 219 LFAACLMELAAQSSKGIYKEIPRRPEELPPLRKADSDPRSGADGQTAPAAKVPSPRSSTSIVKPHLWAILDGLRLIFSSN 298 (368)
Q Consensus 219 lvaa~lL~la~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~g~~~i~rSp 298 (368)
..-..++.+++.++..++|+++|... + +|..... .+++++++|.|.++.||+++++|||
T Consensus 224 ~~~~~vi~~~~~i~~~l~~~~~r~il-------~--~~~f~~~------------~~~kk~~~k~k~~~~~s~k~i~~Sk 282 (509)
T COG3202 224 QILFIVIVILGIIAILLYRYINRNVL-------T--DPLFYLR------------AKKKKKKKKLKLGLIESFKMILRSK 282 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcc-------c--CcchhHH------------HhcccccccccCcHHHHHHHHHhhh
Confidence 33345556666777888899888763 2 2222210 1222456788999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcC
Q 017669 299 YLLSVSLFLWLSAVVSSFFYFQKVTVIAMTVSSSLGRRRLLAEINSFIAVFILAGQLTLTGTSFLLLGL 367 (368)
Q Consensus 299 YLl~Ial~v~l~~~vst~lyf~~~~~v~~~~~d~~~rt~ffa~i~~~v~v~tl~~QlflTgrii~~~Gv 367 (368)
||++||+.+++|++++|++|.+||+.+++.+|+++++++|||+++.++|+++++.+++.+|+++||.|-
T Consensus 283 yL~~ial~vl~Y~v~inLvE~~wKs~ik~~~~~~~~~~~f~~~~~~~tgvv~~v~~~~~~s~~ir~~GW 351 (509)
T COG3202 283 YLGAIALLVLAYGVSINLVEGVWKSGIKELYPTTNEYTAFMGRFQIWTGVVSLVVFLFPGSNLIRRVGW 351 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhH
Confidence 999999999999999999999999999999999999999999999999999999999999999999984
No 3
>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane
Probab=100.00 E-value=7.9e-51 Score=419.08 Aligned_cols=313 Identities=17% Similarity=0.243 Sum_probs=263.0
Q ss_pred hhhhhHHHhhhhccCCCchhHHHHHHHHHHHHHHHHhhhhhhhhhhhhc-cCcCcchhHH-HHHHHHHHHHHHHHHHhhc
Q 017669 9 KSRLDAFASVFVTLHPHETSALLHSSSCFFFILSAYFVVLPLRDEGAIS-LGLSKLPGLF-VGSLILTLIAAPVSTLIFS 86 (368)
Q Consensus 9 ~~~~~~~~~~~~~i~~~E~~~~l~~~l~fF~il~aYyiLRPvRD~l~v~-~G~e~Lp~Lf-~~t~~~~l~~~ply~~l~~ 86 (368)
+.+..++-+++||||++|.+|++++.+++||++++|.+||++||++.++ -|+|.+||+| |+++|++++++.+|+|+++
T Consensus 5 ~~~~~~~~~~~~pi~~~E~~k~~~l~~m~f~i~f~y~~lR~~KD~lvvt~~gae~I~flK~~~vlP~a~~f~~~y~kl~n 84 (491)
T PF03219_consen 5 EKEFSKLRSIFWPIHRSELKKFLPLALMFFFILFNYTILRDLKDTLVVTAQGAEVIPFLKVWGVLPVAILFTILYSKLSN 84 (491)
T ss_pred hhhHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCeEEEecCChhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4466677789999999999999999999999999999999999999994 5999999999 8999999999999999999
Q ss_pred CCCCcchhHHHHHHHHHHHHHHHHHHHHHhhhcccccchhhhhhhchhhccccCCCCCcchhcccCCCCCCccccccccc
Q 017669 87 LPNLSKAKALVLIHRFFSVSLLVFFLLWQSSSIGYLSKLESVSHLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWF 166 (368)
Q Consensus 87 ~~r~sr~r~~~~~~~fF~~~LL~F~~l~~~~~~~y~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~w~~r~W~ 166 (368)
+++|+++++.+..+| ++||++|++.. | | ++|.+||+...|.++..+++|++| ++.+.|||+
T Consensus 85 --~~s~~~lFy~~~~~F----~~fF~~f~~vl--y--P--------~~~~lhp~~~~~~~~~~~~~~~~~-~i~~~~~Wt 145 (491)
T PF03219_consen 85 --RLSREKLFYIIIIPF----LGFFALFAFVL--Y--P--------NRDILHPDAFADKLLAILPPGFKG-FIAMFRNWT 145 (491)
T ss_pred --cCCHHHHHHHHHHHH----HHHHHHHHHHH--h--h--------chhhcCCCHHHHHhhhhccchHHH-HHHHHHHHH
Confidence 999999999999999 99999999974 3 5 778888888777788888888887 556779999
Q ss_pred ccccceeeehhHHHHHHHHHH-HHHHHHHHhhChh----hHHHHHHHHH---------H-HHhH------------H--H
Q 017669 167 YVSVRMGFFLWVALLNLITIS-STWARVIDVMDSE----LFGSLFAAGM---------A-FLGP------------Y--L 217 (368)
Q Consensus 167 y~~v~~~FyVWvsVfnL~~iS-lFWs~~~dvf~~~----LfG~i~ag~~---------a-~lG~------------~--L 217 (368)
| ++|||+..++.-+++| +||+++||+++.+ .||+++.|+- . .+.. | .
T Consensus 146 ~----slfYv~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~~~~~~~~~~~~~~~~~ 221 (491)
T PF03219_consen 146 F----SLFYVMAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSSFLRKSLPAGVDAWELS 221 (491)
T ss_pred H----HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccHhHH
Confidence 9 8999977777666888 8999999999999 4444333332 1 2211 1 2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCcccchHhHHHHHhhc
Q 017669 218 LLFAACLMELAAQSSKGIYKEIPRRPEELPPLRKADSDPRSGADGQTAPAAKVPSPRSSTSIVKPHLWAILDGLRLIFSS 297 (368)
Q Consensus 218 Llvaa~lL~la~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~g~~~i~rS 297 (368)
+...+.++.+++.++..++|+++++.. + +|+.. + +.+++||||.|.++.||+++++||
T Consensus 222 l~~l~~~v~~~g~~i~~~~~~~~~~vl-------~--~~~~~--~-----------~~~~~kk~k~k~s~~es~k~l~kS 279 (491)
T PF03219_consen 222 LNSLMGIVLILGIVIILLYRYMNKNVL-------T--DPRFY--P-----------SAKKKKKKKPKMSLKESFKLLLKS 279 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcc-------C--ccccc--h-----------hhhcccccCCCccHHHHHHHHHhC
Confidence 222255566788888889999887753 2 11211 0 011235678889999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcC
Q 017669 298 NYLLSVSLFLWLSAVVSSFFYFQKVTVIAMTVSSSLGRRRLLAEINSFIAVFILAGQLTLTGTSFLLLGL 367 (368)
Q Consensus 298 pYLl~Ial~v~l~~~vst~lyf~~~~~v~~~~~d~~~rt~ffa~i~~~v~v~tl~~QlflTgrii~~~Gv 367 (368)
|||++||+++++|++++|++|++||+++++.|||++|+++|||++++++|++|++.| +++++++|++|.
T Consensus 280 ~yL~~Ia~lvi~Ygi~inLvE~~wK~~lk~~~~~~~~ysafmG~~~~~tGivtii~~-~l~~~iir~~GW 348 (491)
T PF03219_consen 280 KYLLCIALLVIAYGISINLVEVVWKSQLKQLYPDPNDYSAFMGKFSSWTGIVTIIMM-FLSSNIIRRFGW 348 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhH
Confidence 999999999999999999999999999999999999999999999999999999999 789999999984
No 4
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=98.09 E-value=0.0038 Score=58.86 Aligned_cols=44 Identities=11% Similarity=0.175 Sum_probs=35.0
Q ss_pred cCcchhHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHH
Q 017669 60 LSKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSV 105 (368)
Q Consensus 60 ~e~Lp~Lf~~t~~~~l~~~ply~~l~~~~r~sr~r~~~~~~~fF~~ 105 (368)
.+++-++.....+...+..|+.|++++ |++|||.+.......++
T Consensus 33 ~~~~g~~~~~~~~~~~i~~~~~G~l~d--r~g~r~~~~~~~~~~~~ 76 (365)
T TIGR00900 33 ASVLSLAALAGMLPYVVLSPIAGALAD--RYDRKKVMIGADLIRAV 76 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHH--hhchhHHHHHHHHHHHH
Confidence 345666677778888999999999999 99999988776655433
No 5
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=98.02 E-value=0.0052 Score=61.19 Aligned_cols=48 Identities=13% Similarity=0.108 Sum_probs=40.7
Q ss_pred CcCcchhHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHHHHH
Q 017669 59 GLSKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVSLL 108 (368)
Q Consensus 59 G~e~Lp~Lf~~t~~~~l~~~ply~~l~~~~r~sr~r~~~~~~~fF~~~LL 108 (368)
+.+.+.|+..+.++...+..|+.|+++. |++|||++.+.-..+++..+
T Consensus 36 s~~~~~~~~~~~~l~~~l~~~~~G~laD--r~grr~vl~~~~~~~~~~~~ 83 (393)
T PRK11195 36 PDWSQPLLQMFFVLAYIVLAPFVGAFAD--SFPKGRVMFIANGIKLLGCL 83 (393)
T ss_pred cHHHHHHHHHHHHHHHHHHHhhhhHhhh--ccCCchhhHHHHHHHHHHHH
Confidence 3556888888888999999999999999 99999999888877755443
No 6
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=97.84 E-value=0.0073 Score=63.82 Aligned_cols=214 Identities=15% Similarity=0.131 Sum_probs=122.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhhcccccchhhhhhhchhhccccCCCCCc
Q 017669 66 LFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVSLLVFFLLWQSSSIGYLSKLESVSHLESLDAVSSNAKEDP 145 (368)
Q Consensus 66 Lf~~t~~~~l~~~ply~~l~~~~r~sr~r~~~~~~~fF~~~LL~F~~l~~~~~~~y~~~~~~~~~~~~~~~l~~~~~~~~ 145 (368)
...++.+-.++++|+.|.++. |++|||++..+...-++..++..++...... .
T Consensus 50 v~~a~~LP~~Llsl~aG~laD--r~drrrili~~~~~~~~~~~~L~~l~~~~~~-------------------------~ 102 (524)
T PF05977_consen 50 VQAASTLPILLLSLFAGALAD--RFDRRRILILSQLLRALVALLLAVLAFFGLL-------------------------S 102 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHhh--cccchHHHHHHHHHHHHHHHHHHHHHHhCcC-------------------------C
Confidence 345666677889999999999 9999999988887664443333333322210 0
Q ss_pred chhcccCCCCCCcccccccccccccceeeehhHHHHHHHHHHHHHHHHHHhhChh-----------------hHHHHHHH
Q 017669 146 KAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALLNLITISSTWARVIDVMDSE-----------------LFGSLFAA 208 (368)
Q Consensus 146 ~~~~~~~~~~~~~~w~~r~W~y~~v~~~FyVWvsVfnL~~iSlFWs~~~dvf~~~-----------------LfG~i~ag 208 (368)
.|.. .++=...++.+-+.--..=+.+.|+.+.| +.|...+|
T Consensus 103 -------------~~~L---------l~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG 160 (524)
T PF05977_consen 103 -------------PWLL---------LILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGG 160 (524)
T ss_pred -------------HHHH---------HHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHH
Confidence 2421 11112444444333334445667787777 33334444
Q ss_pred HHH-HHhH-HHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCcccc
Q 017669 209 GMA-FLGP-YLLLFAACLMELAAQSSKGIYKEIPRRPEELPPLRKADSDPRSGADGQTAPAAKVPSPRSSTSIVKPHLWA 286 (368)
Q Consensus 209 ~~a-~lG~-~LLlvaa~lL~la~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~ 286 (368)
.+. .+|+ +.+++-++...++..+ +.+++.+. + ++. .++++...+
T Consensus 161 ~Lva~~G~~~~f~inalsfl~~i~~---l~~~~~~~---------~----~~~------------------~~~e~~~~~ 206 (524)
T PF05977_consen 161 ILVAFFGAAAAFLINALSFLISILA---LLRWKPPP---------P----PSS------------------LPRERFFSA 206 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHccccc---------c----ccc------------------cchhhhhhh
Confidence 443 5564 3333333322222222 33332211 0 000 011245568
Q ss_pred hHhHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhc
Q 017669 287 ILDGLRLIFSSNYLLSVSLFLWLSAVVSSFFYFQKVTVIAMTVSSSLGRRRLLAEINSFIAVFILAGQLTLTGTSFLLLG 366 (368)
Q Consensus 287 ~~~g~~~i~rSpYLl~Ial~v~l~~~vst~lyf~~~~~v~~~~~d~~~rt~ffa~i~~~v~v~tl~~QlflTgrii~~~G 366 (368)
+.+|++++.+||.+..+.+...++++...-++-..--++++..... ...+|-+....++-+++.-+.+ +++-++++
T Consensus 207 l~~G~ryv~~~~~l~~~l~~~~~~~l~~~a~~aLlPl~a~~~l~~~---a~~yGll~a~~gvGai~Gal~~-~~l~~~~~ 282 (524)
T PF05977_consen 207 LREGLRYVRSSPPLRSVLLRSFLFNLFASAVWALLPLFARDVLGGG---ASGYGLLLAAFGVGAILGALLL-PRLRRRLS 282 (524)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHhhhHHHHhhhHHHHHHhCCc---HHHHHHHHHHHHHHHHHHHHHH-HHhhcccC
Confidence 9999999999999988777666677666555544444555554322 3477888888888888777764 46666543
No 7
>TIGR00893 2A0114 d-galactonate transporter.
Probab=97.83 E-value=0.0077 Score=56.79 Aligned_cols=50 Identities=8% Similarity=0.119 Sum_probs=38.2
Q ss_pred hhhhhhhccCcCcchhHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHH
Q 017669 50 LRDEGAISLGLSKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFF 103 (368)
Q Consensus 50 vRD~l~v~~G~e~Lp~Lf~~t~~~~l~~~ply~~l~~~~r~sr~r~~~~~~~fF 103 (368)
++|++++ ..++.-++.....+...+..|+.|++++ |++||+.+......+
T Consensus 20 ~~~~~g~--s~~~~~~~~~~~~~~~~~~~~~~g~l~d--~~g~r~~~~~~~~~~ 69 (399)
T TIGR00893 20 LQEDLGL--SAAQYGYVFSAFSWGYVVGQFPGGWLLD--RFGARKTLAVFIVIW 69 (399)
T ss_pred HHHhhCC--ChhhHHHHHHHHHHHHHHHHHhHHHHHH--hcCcceeeHHHHHHH
Confidence 4555544 3455667778888999999999999999 999999886655444
No 8
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=97.79 E-value=0.023 Score=56.09 Aligned_cols=79 Identities=10% Similarity=-0.032 Sum_probs=52.8
Q ss_pred chhHHHHHHHHHHHHHHHHhhhhhhhhhhhhccC--cCcchhHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHH
Q 017669 26 ETSALLHSSSCFFFILSAYFVVLPLRDEGAISLG--LSKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFF 103 (368)
Q Consensus 26 E~~~~l~~~l~fF~il~aYyiLRPvRD~l~v~~G--~e~Lp~Lf~~t~~~~l~~~ply~~l~~~~r~sr~r~~~~~~~fF 103 (368)
+.-..+...++-|+...+..++.|.-..+.-+.| .+++.+...+..+...+..|+.|.+++ |++|||++......+
T Consensus 11 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~d--r~g~r~~l~~~~~~~ 88 (406)
T PRK15402 11 ALLFPLCLVLFEFATYIANDMIQPGMLAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSD--RIGRRPVMLAGVAFF 88 (406)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHhcchHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhCChHHHHHHHHHH
Confidence 3333444455555555566666666555443333 456777778888889999999999999 999999877655554
Q ss_pred HHH
Q 017669 104 SVS 106 (368)
Q Consensus 104 ~~~ 106 (368)
++.
T Consensus 89 ~~~ 91 (406)
T PRK15402 89 ILT 91 (406)
T ss_pred HHH
Confidence 333
No 9
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=97.77 E-value=0.045 Score=53.30 Aligned_cols=71 Identities=15% Similarity=0.106 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhhccCcCc-------chhHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHH
Q 017669 31 LHSSSCFFFILSAYFVVLPLRDEGAISLGLSK-------LPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFF 103 (368)
Q Consensus 31 l~~~l~fF~il~aYyiLRPvRD~l~v~~G~e~-------Lp~Lf~~t~~~~l~~~ply~~l~~~~r~sr~r~~~~~~~fF 103 (368)
....+..|+...++.+..|.=..+.-+.|.+. .-++.....+...+..|+.|++++ |++||+.+.......
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~d--r~g~r~~~~~~~~~~ 94 (408)
T PRK09874 17 TVAWLGCFLTGAAFSLVMPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLAD--RKGRKIMLLRSALGM 94 (408)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hhCcHHHHHHHHHHH
Confidence 34456677777888887776666555544442 134446667788999999999999 999999876554444
No 10
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=97.75 E-value=0.0052 Score=58.12 Aligned_cols=53 Identities=15% Similarity=-0.014 Sum_probs=38.8
Q ss_pred hhhhhhhccCcCcchhHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHHH
Q 017669 50 LRDEGAISLGLSKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVS 106 (368)
Q Consensus 50 vRD~l~v~~G~e~Lp~Lf~~t~~~~l~~~ply~~l~~~~r~sr~r~~~~~~~fF~~~ 106 (368)
+.|+++. ..++.-++.........+..++.|++++ |++||+.+.......++.
T Consensus 21 ~~~~~g~--s~~~~g~~~~~~~~~~~~~~~~~g~l~d--r~g~r~~~~~~~~~~~~~ 73 (379)
T TIGR00881 21 LVEEIGL--SKTDLGLLLSSFSIAYGISKFVMGSVSD--RSNPRVFLPIGLILCAIV 73 (379)
T ss_pred HHHHhCC--CHhHHHHHHHHHHHHHHhhhhhhhHHHH--hhCCeehhHHHHHHHHHH
Confidence 3444433 3445677777788889999999999999 999999887665555433
No 11
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=97.75 E-value=0.005 Score=57.93 Aligned_cols=70 Identities=16% Similarity=0.243 Sum_probs=48.7
Q ss_pred HHHHHHHHHHhhhhhhhh-hhhhcc--CcCcchhHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHHH
Q 017669 35 SCFFFILSAYFVVLPLRD-EGAISL--GLSKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVS 106 (368)
Q Consensus 35 l~fF~il~aYyiLRPvRD-~l~v~~--G~e~Lp~Lf~~t~~~~l~~~ply~~l~~~~r~sr~r~~~~~~~fF~~~ 106 (368)
+..|+...+..++-|.-. .+.-+. ..+++-++.....+...+..|+.|++++ |++||+++......+++.
T Consensus 3 l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d--r~g~r~~l~~~~~~~~~~ 75 (352)
T PF07690_consen 3 LAFFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSD--RFGRRRVLIIGLLLFALG 75 (352)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHH--HS-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HcCCeeeEeehhhhhhhH
Confidence 444555555555555544 333232 4556778888888999999999999999 999999877776666555
No 12
>PRK09528 lacY galactoside permease; Reviewed
Probab=97.68 E-value=0.0073 Score=60.07 Aligned_cols=70 Identities=21% Similarity=0.246 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHhhhhh-----hhhhhhhccCcCcchhHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHH
Q 017669 31 LHSSSCFFFILSAYFVVLP-----LRDEGAISLGLSKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFS 104 (368)
Q Consensus 31 l~~~l~fF~il~aYyiLRP-----vRD~l~v~~G~e~Lp~Lf~~t~~~~l~~~ply~~l~~~~r~sr~r~~~~~~~fF~ 104 (368)
..+.+.+|+..++|...-| ++|.++. +..++-.+.....+...+..|+.|+++. |++|||.+.+....++
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~--s~~~~g~~~s~~~l~~~i~~~~~G~l~D--r~g~r~~~~~~~~~~~ 87 (420)
T PRK09528 13 WIFSLFFFFFFFIWSSWFSFFPIWLHDINGL--SGTDTGIIFSANSLFALLFQPLYGLISD--KLGLKKHLLWIISGLL 87 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhCchHHHHHHHHHHH
Confidence 3334455555555554444 3554443 4456677778888999999999999999 9999999876555443
No 13
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=97.67 E-value=0.046 Score=52.48 Aligned_cols=64 Identities=16% Similarity=-0.020 Sum_probs=44.3
Q ss_pred HHHHHHHhhhhhhhhhhhhccC--cCcchhHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHH
Q 017669 38 FFILSAYFVVLPLRDEGAISLG--LSKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFF 103 (368)
Q Consensus 38 F~il~aYyiLRPvRD~l~v~~G--~e~Lp~Lf~~t~~~~l~~~ply~~l~~~~r~sr~r~~~~~~~fF 103 (368)
++...+..+..|.-+.+.-+.| .++.-++.....+...+..|+.|++.+ |++||+.+......+
T Consensus 15 ~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d--~~g~r~~~~~~~~~~ 80 (385)
T TIGR00710 15 ILGPLGIDMYLPAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSD--RYGRRPVLLLGLFIF 80 (385)
T ss_pred HHHHHHHHHhcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHH--hcCChHHHHHHHHHH
Confidence 3334555666665544433333 455677777778889999999999999 999999887655444
No 14
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=97.64 E-value=0.026 Score=55.55 Aligned_cols=61 Identities=15% Similarity=0.128 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhhh----hhhhhhccCcCcchhHHHHHHHHHHHHHHHHHHhhcCCCCcch
Q 017669 29 ALLHSSSCFFFILSAYFVVLPL----RDEGAISLGLSKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKA 93 (368)
Q Consensus 29 ~~l~~~l~fF~il~aYyiLRPv----RD~l~v~~G~e~Lp~Lf~~t~~~~l~~~ply~~l~~~~r~sr~ 93 (368)
+..+..+.+|+..+++.+.-|. -++.+ .+.+++-++.....+...+..|+.|.++. |++|+
T Consensus 5 ~~~~~~~~~~~~~~~~g~~~p~l~~~l~~~g--~s~~~iG~~~~~~~l~~~l~~~~~g~l~d--r~g~~ 69 (382)
T PRK11128 5 PTRWLALSYFGYFFAYGVFLPFWSVWLKGQG--YTPETIGLLLGAGLVARFLGSLLIAPRVK--DPSQL 69 (382)
T ss_pred ccHHHHHHHHHHHHHHHHHhhhHHHHHHhcC--CCHHHHHHHHHHHHHHHHhhhHHHHHHHh--hhcch
Confidence 4456666788888888888883 23322 24455556566667888899999999999 99984
No 15
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=97.60 E-value=0.019 Score=59.36 Aligned_cols=77 Identities=17% Similarity=0.097 Sum_probs=67.5
Q ss_pred HHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcC
Q 017669 290 GLRLIFSSNYLLSVSLFLWLSAVVSSFFYFQKVTVIAMTVSSSLGRRRLLAEINSFIAVFILAGQLTLTGTSFLLLGL 367 (368)
Q Consensus 290 g~~~i~rSpYLl~Ial~v~l~~~vst~lyf~~~~~v~~~~~d~~~rt~ffa~i~~~v~v~tl~~QlflTgrii~~~Gv 367 (368)
.+..++|.|-+..+.+++......-+..|-|....-+..++++++=++.+|..++ ++++.=+.-+++.+++++|.|.
T Consensus 212 ~~~~l~k~~~fw~~~l~v~g~~~~Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s-~~v~~E~~~m~~~p~li~rig~ 288 (412)
T PF01306_consen 212 DVLSLFKMRNFWFFVLFVIGVAAIYDVFDQQFPIYFASFFQSAGQGNQMYGYLWS-VQVFLEALMMFFSPWLINRIGA 288 (412)
T ss_dssp HHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH-H
T ss_pred HHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChhHHhHHHH-HHHHHHHHHHHHHHHHHHhcCh
Confidence 3678999999999999999999999999999999999999999999999999965 4566667888889999999983
No 16
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=97.59 E-value=0.034 Score=54.77 Aligned_cols=69 Identities=19% Similarity=0.235 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHhhhhhh-----hhhhhhccCcCcchhHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHH
Q 017669 33 SSSCFFFILSAYFVVLPL-----RDEGAISLGLSKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSV 105 (368)
Q Consensus 33 ~~l~fF~il~aYyiLRPv-----RD~l~v~~G~e~Lp~Lf~~t~~~~l~~~ply~~l~~~~r~sr~r~~~~~~~fF~~ 105 (368)
.....||+..++...-|. .|+.+. ...+.-.+.....++..+..|+.|++++ |++|||.+......+++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--s~~~~g~~~~~~~l~~~i~~~~~G~l~D--r~grr~~~~~~~~~~~~ 80 (396)
T TIGR00882 7 FGLFFFLYFFIMSAYFPFFPIWLHDVNGL--SKTDTGIVFSCISLFSILFQPLFGLISD--KLGLKKHLLWIISGLLV 80 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhCcHHHHHHHHHHHHH
Confidence 334555566666666664 444433 2344566778888999999999999999 99999998776555543
No 17
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=97.58 E-value=0.071 Score=52.26 Aligned_cols=76 Identities=9% Similarity=0.041 Sum_probs=52.0
Q ss_pred chhHHHHHHHHHHHHHHHHhhhhhhhhhhhhccC--cCcchhHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHH
Q 017669 26 ETSALLHSSSCFFFILSAYFVVLPLRDEGAISLG--LSKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFF 103 (368)
Q Consensus 26 E~~~~l~~~l~fF~il~aYyiLRPvRD~l~v~~G--~e~Lp~Lf~~t~~~~l~~~ply~~l~~~~r~sr~r~~~~~~~fF 103 (368)
..+.+....+..++-..++++.-|.=+.+.-+.| .++.-++.....+...+..|+.|++++ |++||+.+......+
T Consensus 6 ~~~~l~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~D--r~grr~~~~~~~~~~ 83 (394)
T PRK11652 6 NVNLLFMLVLLVAVGQMAQTIYVPAIADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSD--RVGRRPVILVGMSIF 83 (394)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHH--hcCChHHHHHHHHHH
Confidence 3444555666666767777766565444443333 345566667777888999999999999 999999876655444
No 18
>PRK10504 putative transporter; Provisional
Probab=97.51 E-value=0.086 Score=53.07 Aligned_cols=81 Identities=17% Similarity=0.126 Sum_probs=56.2
Q ss_pred chhHHHHHHHHHHHHHHHHhhhhhhhhhhhhccCcCc--chhHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHH
Q 017669 26 ETSALLHSSSCFFFILSAYFVVLPLRDEGAISLGLSK--LPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFF 103 (368)
Q Consensus 26 E~~~~l~~~l~fF~il~aYyiLRPvRD~l~v~~G~e~--Lp~Lf~~t~~~~l~~~ply~~l~~~~r~sr~r~~~~~~~fF 103 (368)
+-+.+...++.+|+....++++-|.=+.+.-+.|.+. .-|+.....+...+..|+.|+++. |++|||++......+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d--~~g~r~~~~~~~~~~ 85 (471)
T PRK10504 8 VRWQLWIVAFGFFMQSLDTTIVNTALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLAD--RVGVRNIFFTAIVLF 85 (471)
T ss_pred hHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhchHHHHHHHHHHH
Confidence 4445566677777777777777776555554445544 445556666777889999999999 999999987666555
Q ss_pred HHHHH
Q 017669 104 SVSLL 108 (368)
Q Consensus 104 ~~~LL 108 (368)
++..+
T Consensus 86 ~~~~~ 90 (471)
T PRK10504 86 TLGSL 90 (471)
T ss_pred HHHHH
Confidence 44433
No 19
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=97.49 E-value=0.11 Score=50.75 Aligned_cols=70 Identities=16% Similarity=-0.034 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhccCcC--cchhHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHH
Q 017669 32 HSSSCFFFILSAYFVVLPLRDEGAISLGLS--KLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFF 103 (368)
Q Consensus 32 ~~~l~fF~il~aYyiLRPvRD~l~v~~G~e--~Lp~Lf~~t~~~~l~~~ply~~l~~~~r~sr~r~~~~~~~fF 103 (368)
..+...+.-..+..+.-|.=..+.-+.|.+ +.-++.....+...+..|+.|++++ |++||+.+......+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~D--r~g~r~~l~~~~~~~ 78 (392)
T PRK10473 7 CSFALVLLYPAGIDMYLVGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIAD--RSGRKPVAIPGAALF 78 (392)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHH--HhCChHHHHHHHHHH
Confidence 345555555555544444433333333333 3455556666778888999999999 999998776544333
No 20
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=97.46 E-value=0.12 Score=51.22 Aligned_cols=76 Identities=14% Similarity=0.079 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHHHHh----hhhhhhhhhhhccCcCcchhHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHH
Q 017669 29 ALLHSSSCFFFILSAYF----VVLPLRDEGAISLGLSKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFS 104 (368)
Q Consensus 29 ~~l~~~l~fF~il~aYy----iLRPvRD~l~v~~G~e~Lp~Lf~~t~~~~l~~~ply~~l~~~~r~sr~r~~~~~~~fF~ 104 (368)
++....+.-|+...+++ .+-|.-++++ .+.+++.++.+...+...+..|+.|++.+ |++|||.+......++
T Consensus 14 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g--~s~~~~g~~~~~~~~~~~i~~~~~g~l~d--r~g~k~~l~~~~~~~~ 89 (402)
T TIGR00897 14 NLLWGYIGVVVFMTGDGLEQGWLSPFLKALG--LSPQQSASAFTLYGIAAAISAWISGVVAE--IIGPLKTMMIGLLLWC 89 (402)
T ss_pred hhhHHHHHHHHHHHhhhhHHHhHHHHHHHhC--CCHHHhHHHHHHHHHHHHHHHHHHHHHHH--HcCcHHHHHHHHHHHH
Confidence 34445555555555443 4555555443 34567788778888889999999999999 9999999877666665
Q ss_pred HHHH
Q 017669 105 VSLL 108 (368)
Q Consensus 105 ~~LL 108 (368)
+..+
T Consensus 90 ~~~~ 93 (402)
T TIGR00897 90 VGHA 93 (402)
T ss_pred HHHH
Confidence 4433
No 21
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=97.31 E-value=0.13 Score=49.60 Aligned_cols=44 Identities=5% Similarity=-0.013 Sum_probs=34.7
Q ss_pred CcCcchhHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHH
Q 017669 59 GLSKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFS 104 (368)
Q Consensus 59 G~e~Lp~Lf~~t~~~~l~~~ply~~l~~~~r~sr~r~~~~~~~fF~ 104 (368)
+.++..++.....+...+..|+.|++.+ |++||+.+.......+
T Consensus 24 s~~~~~~~~~~~~~~~~~~~~~~g~l~d--~~g~~~~~~~~~~~~~ 67 (377)
T PRK11102 24 SAGSVQMTLSAYILGFAIGQLFYGPMAD--SFGRKPVILGGTLVFA 67 (377)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhhchHHh--hcCChHHHHHHHHHHH
Confidence 3456777777777888899999999999 9999998766554443
No 22
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=97.31 E-value=0.065 Score=53.90 Aligned_cols=44 Identities=7% Similarity=-0.190 Sum_probs=35.5
Q ss_pred cCcCcchhHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHH
Q 017669 58 LGLSKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFF 103 (368)
Q Consensus 58 ~G~e~Lp~Lf~~t~~~~l~~~ply~~l~~~~r~sr~r~~~~~~~fF 103 (368)
.+.++.-++.+.......+..++.|++++ |++||+.+......+
T Consensus 58 ~s~~~~g~~~~~~~~~~~~~~~~~G~l~d--r~g~~~~~~~~~~~~ 101 (438)
T TIGR00712 58 FSKGELGFALSAISIAYGFSKFIMGSVSD--RSNPRVFLPAGLILS 101 (438)
T ss_pred CCHhHhHHHHHHHHHHHHHhhhccchhhh--ccCCceehHHHHHHH
Confidence 45666778778888999999999999999 999999776544444
No 23
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=97.28 E-value=0.075 Score=53.75 Aligned_cols=46 Identities=9% Similarity=-0.135 Sum_probs=35.4
Q ss_pred cCcchhHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHHHH
Q 017669 60 LSKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVSL 107 (368)
Q Consensus 60 ~e~Lp~Lf~~t~~~~l~~~ply~~l~~~~r~sr~r~~~~~~~fF~~~L 107 (368)
.+++-++.....+...+..|+.|++++ |+.||+++......+++..
T Consensus 62 ~~~~g~~~~~~~i~~~~~~~~~G~l~D--r~g~k~~l~~~~~~~~i~~ 107 (452)
T PRK11273 62 RGDLGFALSGISIAYGFSKFIMGSVSD--RSNPRVFLPAGLILAAAVM 107 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhh--ccCCchhHHHHHHHHHHHH
Confidence 345556667778889999999999999 9999998776665554433
No 24
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=97.26 E-value=0.065 Score=60.51 Aligned_cols=75 Identities=9% Similarity=-0.036 Sum_probs=46.9
Q ss_pred chHhHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 017669 286 AILDGLRLIFSSNYLLSVSLFLWLSAVVSSFFYFQKVTVIAMTVSSSLGRRRLLAEINSFIAVFILAGQLTLTGTSFLL 364 (368)
Q Consensus 286 ~~~~g~~~i~rSpYLl~Ial~v~l~~~vst~lyf~~~~~v~~~~~d~~~rt~ffa~i~~~v~v~tl~~QlflTgrii~~ 364 (368)
...++++.+.++|++....+...+...+...+......++++.+...+ ..+|.+.+..++..++.++. .|++.++
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~---~~~g~~~~~~~~g~~ig~~~-~g~l~~~ 287 (1140)
T PRK06814 213 STITLLKYAKADKRIWLAILGISWFWLVGAVVLSQLPLLAKETLGGDE---NVATLFLAVFSVGVAVGSFL-ASKLSEG 287 (1140)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCch---HHHHHHHHHHHHHHHHHHHH-HHHHhCC
Confidence 467899999999999887776666555554444444555555543332 23555556666666655655 4566654
No 25
>PRK10054 putative transporter; Provisional
Probab=97.25 E-value=0.15 Score=50.88 Aligned_cols=75 Identities=8% Similarity=0.014 Sum_probs=49.0
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhhh-hhhhhccC--cCcchhHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHH
Q 017669 27 TSALLHSSSCFFFILSAYFVVLPLR-DEGAISLG--LSKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFF 103 (368)
Q Consensus 27 ~~~~l~~~l~fF~il~aYyiLRPvR-D~l~v~~G--~e~Lp~Lf~~t~~~~l~~~ply~~l~~~~r~sr~r~~~~~~~fF 103 (368)
-|.+.......||...+++.+-|.= ..+.-+.| .++.-++......+.++..|+.|++++ |+.||+++......+
T Consensus 6 ~~~~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~D--r~g~k~~~~~~~~~~ 83 (395)
T PRK10054 6 RRSTSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILAD--KFDKKRYMLLAITAF 83 (395)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh--hcCcchhHHHHHHHH
Confidence 3444455556777777777766532 22221223 344556556667888899999999999 999999876555444
No 26
>PRK03545 putative arabinose transporter; Provisional
Probab=97.24 E-value=0.24 Score=48.68 Aligned_cols=63 Identities=19% Similarity=0.169 Sum_probs=41.9
Q ss_pred HHHhhhhhhhhhhhhcc--CcCcchhHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHHH
Q 017669 42 SAYFVVLPLRDEGAISL--GLSKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVS 106 (368)
Q Consensus 42 ~aYyiLRPvRD~l~v~~--G~e~Lp~Lf~~t~~~~l~~~ply~~l~~~~r~sr~r~~~~~~~fF~~~ 106 (368)
...++.-|+-+.+.-+. ..++..++.+.....+.+..++.|++.+ |++|||++......+++.
T Consensus 23 ~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~d--r~g~r~~~~~~~~~~~~~ 87 (390)
T PRK03545 23 TTEFVPVGLLSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTS--NVERRKLLIGLFVLFIAS 87 (390)
T ss_pred hHHHHHHcchHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCChHHHHHHHHHHHHHH
Confidence 44344444434443332 3455666667777788888999999999 999999987765555443
No 27
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=97.23 E-value=0.086 Score=59.06 Aligned_cols=35 Identities=14% Similarity=0.186 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHH
Q 017669 67 FVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFF 103 (368)
Q Consensus 67 f~~t~~~~l~~~ply~~l~~~~r~sr~r~~~~~~~fF 103 (368)
..+.++..++..|+.|+++. |++||+++.+.....
T Consensus 53 ~~~~~l~~~l~~~~~G~l~D--r~grk~~l~~~~~~~ 87 (1146)
T PRK08633 53 NALFLLPFLLLSSPAGFLAD--KFSKNRVIRIVKLFE 87 (1146)
T ss_pred HHHHHHHHHHHhhhHhhhcc--cccHHHHHHHHHHHH
Confidence 35556777889999999999 999999887665443
No 28
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=97.19 E-value=0.091 Score=52.02 Aligned_cols=77 Identities=19% Similarity=0.143 Sum_probs=48.0
Q ss_pred chHhHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 017669 286 AILDGLRLIFSSNYLLSVSLFLWLSAVVSSFFYFQKVTVIAMTVS-SSLGRRRLLAEINSFIAVFILAGQLTLTGTSFLL 364 (368)
Q Consensus 286 ~~~~g~~~i~rSpYLl~Ial~v~l~~~vst~lyf~~~~~v~~~~~-d~~~rt~ffa~i~~~v~v~tl~~QlflTgrii~~ 364 (368)
+..++++.++|+|++..+.+...++.....+.+........+... +++ -.|.+...+++++.+....+.|++.+|
T Consensus 197 ~~~~~~~~l~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~~G~~~~----~~g~~~~~~~~~~~i~g~~~~g~l~~r 272 (402)
T PRK11902 197 AVVGPLRDFFSRRGAWALLLLIVLYKLGDAFAGSLSTTFLIRGAGFSAG----EVGIVNKTLGLAATIVGALAGGTLMVR 272 (402)
T ss_pred HHHHHHHHHHhCcCHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHH----HHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 356788999999998887777777665544433222223333222 332 344455555666556667778999998
Q ss_pred hc
Q 017669 365 LG 366 (368)
Q Consensus 365 ~G 366 (368)
+|
T Consensus 273 ~g 274 (402)
T PRK11902 273 LG 274 (402)
T ss_pred Hh
Confidence 87
No 29
>PRK11663 regulatory protein UhpC; Provisional
Probab=97.11 E-value=0.32 Score=48.98 Aligned_cols=55 Identities=11% Similarity=-0.086 Sum_probs=38.6
Q ss_pred hhhhhhhhhhccCcCcchhHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHH
Q 017669 47 VLPLRDEGAISLGLSKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSV 105 (368)
Q Consensus 47 LRPvRD~l~v~~G~e~Lp~Lf~~t~~~~l~~~ply~~l~~~~r~sr~r~~~~~~~fF~~ 105 (368)
+-++.++++++ .++.-++.....+...+..|+.|++.+ |++||+++......+++
T Consensus 46 ~~~~~~~~g~s--~~~~g~~~~~~~~~~~~~~~~~G~l~d--r~g~r~~~~~~~~~~~~ 100 (434)
T PRK11663 46 MPEMLADLGLS--RSDIGLLATLFYITYGVSKFVSGIVSD--RSNARYFMGIGLIATGI 100 (434)
T ss_pred hHHHHHhcCCC--HHHHHHHHHHHHHHHHHHHhhhhHHHh--hcCCchhHHHHHHHHHH
Confidence 44555555442 234555557777888999999999999 99999987665555433
No 30
>PRK10489 enterobactin exporter EntS; Provisional
Probab=97.08 E-value=0.17 Score=50.20 Aligned_cols=77 Identities=12% Similarity=-0.011 Sum_probs=47.7
Q ss_pred CCchhHHHHHHHHHHHHHHHHhhhhhh-hhhhhhccCcCcchhHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHH
Q 017669 24 PHETSALLHSSSCFFFILSAYFVVLPL-RDEGAISLGLSKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRF 102 (368)
Q Consensus 24 ~~E~~~~l~~~l~fF~il~aYyiLRPv-RD~l~v~~G~e~Lp~Lf~~t~~~~l~~~ply~~l~~~~r~sr~r~~~~~~~f 102 (368)
..+.+.++......++-.....+.-|. .+++ ..+..+.-++.....+..++.+|+.|+++. |++|||++......
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~s~~~~g~~~~~~~l~~~~~~~~~G~l~d--r~g~~~~l~~~~~~ 91 (417)
T PRK10489 16 HPAFRAVFIARFISIFGLGLLGVAVPVQIQMM--TGSTLQVGLSVTLTGGAMFIGLMVGGVLAD--RYDRKKLILLARGT 91 (417)
T ss_pred CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHHHHHHHHhhHHHhh--hcCCceEEEehHHH
Confidence 345555544433333333333333343 2222 234456677778888889999999999999 99999988765544
Q ss_pred HH
Q 017669 103 FS 104 (368)
Q Consensus 103 F~ 104 (368)
++
T Consensus 92 ~~ 93 (417)
T PRK10489 92 CG 93 (417)
T ss_pred HH
Confidence 43
No 31
>TIGR00901 2A0125 AmpG-related permease.
Probab=97.04 E-value=0.2 Score=48.22 Aligned_cols=77 Identities=16% Similarity=0.036 Sum_probs=46.1
Q ss_pred chHhHHHHHhhchh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 017669 286 AILDGLRLIFSSNY---LLSVSLFLWLSAVVSSFFYFQKVTVIAMTVSSSLGRRRLLAEINSFIAVFILAGQLTLTGTSF 362 (368)
Q Consensus 286 ~~~~g~~~i~rSpY---Ll~Ial~v~l~~~vst~lyf~~~~~v~~~~~d~~~rt~ffa~i~~~v~v~tl~~QlflTgrii 362 (368)
+.+++++.++++|. +..+.+...++......++-.....+++..-|++ -.|.+....+++..+.+.++.|++.
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~----~~g~~~~~~~~~~~~~g~~~~g~l~ 269 (356)
T TIGR00901 194 AVLKPIREFFQRKNMIQALLLLLLIVLYKLGDSAATVLTTLFLLDMGFSKE----EIALVAKINGLLGAILGGLIGGIIM 269 (356)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH----HHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 35678888999885 5444444444444443343333344444222332 3455666666666677888899999
Q ss_pred HHhc
Q 017669 363 LLLG 366 (368)
Q Consensus 363 ~~~G 366 (368)
+|+|
T Consensus 270 ~r~g 273 (356)
T TIGR00901 270 QPLN 273 (356)
T ss_pred hhhh
Confidence 9987
No 32
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=97.02 E-value=0.33 Score=46.40 Aligned_cols=73 Identities=16% Similarity=0.225 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHhhhhhhhhh-hhhccC--cCcchhHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHHHH
Q 017669 33 SSSCFFFILSAYFVVLPLRDE-GAISLG--LSKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVSL 107 (368)
Q Consensus 33 ~~l~fF~il~aYyiLRPvRD~-l~v~~G--~e~Lp~Lf~~t~~~~l~~~ply~~l~~~~r~sr~r~~~~~~~fF~~~L 107 (368)
..+.+++-.+.++..-|+-.. +.-+.| .++.-++.....+...+..|+.|++++ |+.||+.+.......++..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d--r~g~r~~~~~~~~~~~i~~ 81 (366)
T TIGR00886 6 SWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVD--KFGPRYTTTLSLLLLAIPC 81 (366)
T ss_pred HHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHH--HhCchHHHHHHHHHHHHHH
Confidence 444455555555555555442 332333 445667778888999999999999999 9999998877665554443
No 33
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=97.01 E-value=0.45 Score=48.37 Aligned_cols=55 Identities=7% Similarity=-0.001 Sum_probs=39.6
Q ss_pred hhhhhhhhhccCcCcchhHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHHH
Q 017669 48 LPLRDEGAISLGLSKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVS 106 (368)
Q Consensus 48 RPvRD~l~v~~G~e~Lp~Lf~~t~~~~l~~~ply~~l~~~~r~sr~r~~~~~~~fF~~~ 106 (368)
-++++++++ +..++-++..+-.....+..|+.|+++. |++||+++.......++.
T Consensus 53 ~~i~~~~~~--s~~~~g~~~s~~~~~~~~~~~~~G~l~D--r~g~r~~l~~~~~~~~~~ 107 (467)
T PRK09556 53 NDMISTYGL--STTELGMIGLGFSITYGVGKTLVGYYAD--GKNTKQFLPFLLILSAIC 107 (467)
T ss_pred HHHHHhcCC--CHHHHHHHHHHHHHHHHHHHhhhhhHhh--ccCccchHHHHHHHHHHH
Confidence 345555544 2445667667777888899999999999 999999887665554433
No 34
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=96.97 E-value=0.48 Score=47.31 Aligned_cols=74 Identities=12% Similarity=0.006 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHhhhhhhhhh-hhhccC--cCcchhHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHHHHH
Q 017669 33 SSSCFFFILSAYFVVLPLRDE-GAISLG--LSKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVSLL 108 (368)
Q Consensus 33 ~~l~fF~il~aYyiLRPvRD~-l~v~~G--~e~Lp~Lf~~t~~~~l~~~ply~~l~~~~r~sr~r~~~~~~~fF~~~LL 108 (368)
.+.--|+...+++.+-|.=.. +.-+.| ...+..+.....+...+..|+.|++++ |++||+++.+.....++..+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~d--r~g~k~~l~~~~~~~~~~~~ 91 (400)
T PRK11646 15 LLIDNMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIAD--RFGAKPMIVTGMLMRAAGFA 91 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHH--HhCchHHHHHHHHHHHHHHH
Confidence 334445555555555555332 222333 333444444445666777899999999 99999998776655544333
No 35
>TIGR00895 2A0115 benzoate transport.
Probab=96.96 E-value=0.098 Score=49.95 Aligned_cols=76 Identities=14% Similarity=0.032 Sum_probs=46.1
Q ss_pred chhHHHHHHHHHHHHHHHHhhhhhhhhhhhhccC--cCcchhHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHH
Q 017669 26 ETSALLHSSSCFFFILSAYFVVLPLRDEGAISLG--LSKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFF 103 (368)
Q Consensus 26 E~~~~l~~~l~fF~il~aYyiLRPvRD~l~v~~G--~e~Lp~Lf~~t~~~~l~~~ply~~l~~~~r~sr~r~~~~~~~fF 103 (368)
..+..+..++..|+....++..-+.-..+.-+.| .++..++.....+.+++..++.|++++ |++||+.+.......
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d--~~g~~~~~~~~~~~~ 92 (398)
T TIGR00895 15 QWRAIILSFLIMLMDGYDLAAMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLAD--RIGRKRVLLWSILLF 92 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHH--HhhhHHHHHHHHHHH
Confidence 3344444555555444334433333222222222 345666777777888999999999999 999999876655444
No 36
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=96.92 E-value=0.52 Score=46.94 Aligned_cols=73 Identities=15% Similarity=0.210 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhccCc--CcchhHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHHHHH
Q 017669 34 SSCFFFILSAYFVVLPLRDEGAISLGL--SKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVSLL 108 (368)
Q Consensus 34 ~l~fF~il~aYyiLRPvRD~l~v~~G~--e~Lp~Lf~~t~~~~l~~~ply~~l~~~~r~sr~r~~~~~~~fF~~~LL 108 (368)
..+.|+....-|..-|.-.++.-+.|. ++.-++.........+..|+.|++++ |++|||.+......+++..+
T Consensus 26 ~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~D--r~grr~~~~~~~~~~~~~~~ 100 (394)
T PRK10213 26 AFCVACLIIVEFLPVSLLTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQ--ATDRRYVVILFAVLLTLSCL 100 (394)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhc--ccCcHHHHHHHHHHHHHHHH
Confidence 333344444444444443333333333 44566667778888899999999999 99999999888877755443
No 37
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=96.89 E-value=0.41 Score=45.22 Aligned_cols=54 Identities=19% Similarity=0.228 Sum_probs=42.0
Q ss_pred hhhhhhhhhhhccCcCcchhHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHH
Q 017669 46 VVLPLRDEGAISLGLSKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFF 103 (368)
Q Consensus 46 iLRPvRD~l~v~~G~e~Lp~Lf~~t~~~~l~~~ply~~l~~~~r~sr~r~~~~~~~fF 103 (368)
++-+++|++++ ..+++-++.........+..|+.|++++ |++||+.+......+
T Consensus 25 ~~~~~~~~~~~--s~~~~g~~~s~~~~~~~~~~~~~G~l~d--~~G~r~~~~~~~~~~ 78 (377)
T TIGR00890 25 LAPPLGRYFGV--GVTAVAIWFTLLLIGLAMSMPVGGLLAD--KFGPRAVAMLGGILY 78 (377)
T ss_pred HHHHHHHHhCC--CHHHHHHHHHHHHHHHHHHhhhhHHHHH--HcCccchhHHhHHHH
Confidence 45566666554 3556788888889999999999999999 999999976654443
No 38
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=96.80 E-value=0.53 Score=45.28 Aligned_cols=78 Identities=18% Similarity=0.137 Sum_probs=55.5
Q ss_pred CCchhHHHHHHHHHHHHHHHHhhhhhhhhhhhhccCc--CcchhHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHH
Q 017669 24 PHETSALLHSSSCFFFILSAYFVVLPLRDEGAISLGL--SKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHR 101 (368)
Q Consensus 24 ~~E~~~~l~~~l~fF~il~aYyiLRPvRD~l~v~~G~--e~Lp~Lf~~t~~~~l~~~ply~~l~~~~r~sr~r~~~~~~~ 101 (368)
+...+.....++.+++--..++++-++-+++.-+.|. ++.-++.........+..|+.|++++ |++||+.+.....
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~D--r~g~r~~~~~~~~ 85 (405)
T TIGR00891 8 RAQWNAFSAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGD--RYGRRLPMVTSIV 85 (405)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHH--HhccHHHHHHHHH
Confidence 4445566666777777777777776666665544444 34556667777899999999999999 9999998776544
Q ss_pred HH
Q 017669 102 FF 103 (368)
Q Consensus 102 fF 103 (368)
.+
T Consensus 86 ~~ 87 (405)
T TIGR00891 86 LF 87 (405)
T ss_pred HH
Confidence 44
No 39
>PRK11010 ampG muropeptide transporter; Validated
Probab=96.76 E-value=0.87 Score=47.17 Aligned_cols=75 Identities=16% Similarity=0.131 Sum_probs=42.5
Q ss_pred HhHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhc
Q 017669 288 LDGLRLIFSSNYLLSVSLFLWLSAVVSSFFYFQKVTVIAMTVS-SSLGRRRLLAEINSFIAVFILAGQLTLTGTSFLLLG 366 (368)
Q Consensus 288 ~~g~~~i~rSpYLl~Ial~v~l~~~vst~lyf~~~~~v~~~~~-d~~~rt~ffa~i~~~v~v~tl~~QlflTgrii~~~G 366 (368)
.+.++.++++|....+.+...++.....+.+.-....+.+... |+.+ .|.+....+.+..++..++.|++.+|+|
T Consensus 212 ~~~l~~~~~~~~~~~~ll~~~l~~~~~~~~~~~~~~~l~~~~G~s~~~----~g~~~~~~g~i~~iiG~ll~G~L~dr~g 287 (491)
T PRK11010 212 VAPLRDFFGRNNAWLILLLIVLYKLGDAFAMSLTTTFLIRGVGFDAGE----VGLVNKTLGLLATIVGALYGGILMQRLS 287 (491)
T ss_pred HHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456677777765555555555555444443333334333222 3332 3444445555566677788999999987
No 40
>PRK12307 putative sialic acid transporter; Provisional
Probab=96.73 E-value=0.69 Score=45.63 Aligned_cols=61 Identities=8% Similarity=0.128 Sum_probs=44.4
Q ss_pred HHhhhhhhhhhhhhccCcCcchhHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHHHH
Q 017669 43 AYFVVLPLRDEGAISLGLSKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVSL 107 (368)
Q Consensus 43 aYyiLRPvRD~l~v~~G~e~Lp~Lf~~t~~~~l~~~ply~~l~~~~r~sr~r~~~~~~~fF~~~L 107 (368)
..+.+..++++.+++ .++..++.....+...+..|+.|++++ |++||+++.+.....++..
T Consensus 37 ~~~~~~~i~~~~~~s--~~~~~~~~~~~~~~~~l~~~~~g~l~d--r~g~r~~l~~~~~~~~~~~ 97 (426)
T PRK12307 37 IFYIMYLIKADLGLT--DMEGAFLATAAFIGRPFGGALFGLLAD--KFGRKPLMMWSIVAYSVGT 97 (426)
T ss_pred HHHHHHHHHHHhCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHH--HhCChHHHHHHHHHHHHHH
Confidence 345555566666553 344566667777889999999999999 9999999877776664443
No 41
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=96.55 E-value=0.91 Score=44.72 Aligned_cols=73 Identities=11% Similarity=-0.005 Sum_probs=47.5
Q ss_pred HHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcC
Q 017669 290 GLRLIFSSNYLLSVSLFLWLSAVVSSFFYFQKVTVIAMTVSSSLGRRRLLAEINSFIAVFILAGQLTLTGTSFLLLGL 367 (368)
Q Consensus 290 g~~~i~rSpYLl~Ial~v~l~~~vst~lyf~~~~~v~~~~~d~~~rt~ffa~i~~~v~v~tl~~QlflTgrii~~~Gv 367 (368)
.++.++|+|.+....+...+........+-.....+++ ..-+++...+ . ..+++++-+.+.++.||+.+|+|.
T Consensus 197 ~~~~~l~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~-~g~s~~~~g~---l-~~~~~~~~i~~~~~~~~l~~r~g~ 269 (382)
T TIGR00902 197 AFIALLKNPMNLRFLAAVCLIQGAHAAYYGFSAIYWQA-AGISASATGL---L-WGIGVLAEIIIFAFSNKLFQNCSA 269 (382)
T ss_pred hHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCHhHHHH---H-HHHHHHHHHHHHHHhHHHHhhCCH
Confidence 46788999988777766666555555544444445555 3333333332 3 335778888889999999999873
No 42
>PRK11043 putative transporter; Provisional
Probab=96.39 E-value=1.1 Score=43.95 Aligned_cols=64 Identities=11% Similarity=-0.013 Sum_probs=43.9
Q ss_pred HHHHHHHHHhhhhhh----hhhhhhccCcCcchhHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHH
Q 017669 36 CFFFILSAYFVVLPL----RDEGAISLGLSKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFF 103 (368)
Q Consensus 36 ~fF~il~aYyiLRPv----RD~l~v~~G~e~Lp~Lf~~t~~~~l~~~ply~~l~~~~r~sr~r~~~~~~~fF 103 (368)
+.++-.++..+.-|. +|++++ ..+++.++.....+.+.+..++.|++++ |++||+.+......+
T Consensus 14 ~~~~~~~~~~~~~p~~~~i~~~~~~--s~~~~g~~~s~~~~~~~~~~~~~g~l~d--r~g~r~~~~~~~~~~ 81 (401)
T PRK11043 14 LSMLGFLATDMYLPAFKAIQADLQT--SASAVSASLSLFLAGFALGQLLWGPLSD--RYGRKPVLLAGLSLF 81 (401)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHCC--CHHHHHHHHHHHHHHHHHHHHhhhhHHh--hcCCcHHHHHHHHHH
Confidence 344444444555554 444433 4556777777778888999999999999 999999876544443
No 43
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=96.33 E-value=1.2 Score=43.65 Aligned_cols=52 Identities=12% Similarity=0.207 Sum_probs=39.7
Q ss_pred hhhhhhhhhccCcCcchhHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHH
Q 017669 48 LPLRDEGAISLGLSKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFF 103 (368)
Q Consensus 48 RPvRD~l~v~~G~e~Lp~Lf~~t~~~~l~~~ply~~l~~~~r~sr~r~~~~~~~fF 103 (368)
-+++++++. +.++..++.....+..++..++.|++++ |++||+++......+
T Consensus 39 ~~~~~~~~~--s~~~~g~~~~~~~~~~~~~~~~~g~l~d--r~g~r~~~~~~~~~~ 90 (406)
T PRK11551 39 PRMAQEFGL--DVAQMGWAFSAGILGLLPGALLGGRLAD--RIGRKRILIVSVALF 90 (406)
T ss_pred HHHHHHhCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhCCchhHHHHHHHH
Confidence 345565543 4556778778888899999999999999 999999987655444
No 44
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=96.13 E-value=1.7 Score=43.47 Aligned_cols=72 Identities=14% Similarity=0.147 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhhccC--cCcchhHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHH
Q 017669 31 LHSSSCFFFILSAYFVVLPLRDEGAISLG--LSKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFS 104 (368)
Q Consensus 31 l~~~l~fF~il~aYyiLRPvRD~l~v~~G--~e~Lp~Lf~~t~~~~l~~~ply~~l~~~~r~sr~r~~~~~~~fF~ 104 (368)
+...+..|+......++.+.-..+.-+.| .++.-|+.+...+...+..|+.|++.+ |++||+.+......++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d--r~g~r~~~~~~~~~~~ 78 (485)
T TIGR00711 5 IVLMLGTFMAVLDSTIVNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAK--RFGTRRLFLISTFAFT 78 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHH--HhCcHHHHHHHHHHHH
Confidence 33444555555555666655555544433 456788888888999999999999999 9999998766655553
No 45
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=96.11 E-value=2 Score=44.12 Aligned_cols=82 Identities=13% Similarity=0.067 Sum_probs=55.8
Q ss_pred hccCCCchhHHHHHHHHHHHHHHHHhhhhhhhhhhhhccCc--CcchhHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHH
Q 017669 20 VTLHPHETSALLHSSSCFFFILSAYFVVLPLRDEGAISLGL--SKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALV 97 (368)
Q Consensus 20 ~~i~~~E~~~~l~~~l~fF~il~aYyiLRPvRD~l~v~~G~--e~Lp~Lf~~t~~~~l~~~ply~~l~~~~r~sr~r~~~ 97 (368)
++.+++..+.+......+++....++..-|.-+.+.-+.|. ++.-++....++.+.+..++.|++++ |+.||+.+.
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~d--r~G~r~~~~ 105 (476)
T PLN00028 28 FSFARPHMRAFHLSWISFFTCFVSTFAAAPLLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCD--LYGPRYGSA 105 (476)
T ss_pred cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhCChHHHH
Confidence 44455556777777777777777777666655544433343 33445556667778888999999999 999998876
Q ss_pred HHHHHH
Q 017669 98 LIHRFF 103 (368)
Q Consensus 98 ~~~~fF 103 (368)
.....+
T Consensus 106 ~~~~~~ 111 (476)
T PLN00028 106 FLLMLT 111 (476)
T ss_pred HHHHHH
Confidence 544333
No 46
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=96.06 E-value=0.46 Score=46.95 Aligned_cols=76 Identities=13% Similarity=0.062 Sum_probs=41.9
Q ss_pred chHhHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHh
Q 017669 286 AILDGLRLIFSSNYLLSVSLFLWLSAVVSSFFYFQKVTVIAMTVSSSLGRRRLLAEINSFIAVFILAGQLTLTGTSFLLL 365 (368)
Q Consensus 286 ~~~~g~~~i~rSpYLl~Ial~v~l~~~vst~lyf~~~~~v~~~~~d~~~rt~ffa~i~~~v~v~tl~~QlflTgrii~~~ 365 (368)
+..+.++.++++|.+..+.+...++.........-..-..+....++++ .+.+....++..+ +..++.|++.+|+
T Consensus 210 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~i~~i-i~~~~~~~l~~r~ 284 (437)
T TIGR00792 210 SLKQIFKALFKNDQLLILCLAYLFYNLAFNIKNGVQVYYFTYVLGDPEL----FSYMGSIAIVAGL-IGVLLFPRLVKKF 284 (437)
T ss_pred CHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcchhheeEeeecCChHH----HHHHHHHHHHHHH-HHHHHHHHHHHHh
Confidence 5678899999999988777666655554433221111111122233332 2333333344443 4455578999998
Q ss_pred c
Q 017669 366 G 366 (368)
Q Consensus 366 G 366 (368)
|
T Consensus 285 g 285 (437)
T TIGR00792 285 G 285 (437)
T ss_pred C
Confidence 7
No 47
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=95.99 E-value=1.5 Score=44.04 Aligned_cols=51 Identities=8% Similarity=0.024 Sum_probs=36.6
Q ss_pred hhhhhhhhccCcCcchhHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHH
Q 017669 49 PLRDEGAISLGLSKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFF 103 (368)
Q Consensus 49 PvRD~l~v~~G~e~Lp~Lf~~t~~~~l~~~ply~~l~~~~r~sr~r~~~~~~~fF 103 (368)
++.|+++.+ .+++-++....++...+..++.|++.+ |++||+++......+
T Consensus 33 ~l~~~~~~s--~~~~g~~~s~~~~~~~~~~~~~g~l~d--r~G~r~~~~~~~~~~ 83 (412)
T TIGR02332 33 TMGKDLGLS--ATMFGLAATLFYAAYVICGIPSNIMLA--IIGARRWIAGIMVLW 83 (412)
T ss_pred hhHhhcCCC--HHHHHHHHHHHHHHHHHHHhhHHHHHH--HhChHHHHHHHHHHH
Confidence 455555432 444555567777888899999999999 999999876555444
No 48
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=95.98 E-value=1.6 Score=42.02 Aligned_cols=53 Identities=9% Similarity=0.106 Sum_probs=38.9
Q ss_pred hhhhhhhhhhccCcCcchhHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHH
Q 017669 47 VLPLRDEGAISLGLSKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFF 103 (368)
Q Consensus 47 LRPvRD~l~v~~G~e~Lp~Lf~~t~~~~l~~~ply~~l~~~~r~sr~r~~~~~~~fF 103 (368)
+-+++|+.++ ..++.-++.....+...+..|+.|++++ |++||+.+.+....+
T Consensus 23 lp~l~~~~~~--s~~~~g~~~s~~~~~~~~~~~~~g~l~d--r~g~r~~~~~~~~~~ 75 (355)
T TIGR00896 23 LPQIRSALGM--SFSVAGLLTALPVLCFAVLAPLAPWLAR--RFGEERSVAAGLLLI 75 (355)
T ss_pred HHHHHHHhCC--CHHHHHHHHHHHHHHHHHHHHhHHHHHH--HhCchHHHHHHHHHH
Confidence 3345555443 3445667778888999999999999999 999999976654333
No 49
>PRK10133 L-fucose transporter; Provisional
Probab=95.89 E-value=2.4 Score=43.21 Aligned_cols=83 Identities=11% Similarity=-0.005 Sum_probs=59.3
Q ss_pred chhHHHHHHHHHHHHHHHHhhhhhhhhhhhhcc--CcCcchhHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHH
Q 017669 26 ETSALLHSSSCFFFILSAYFVVLPLRDEGAISL--GLSKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFF 103 (368)
Q Consensus 26 E~~~~l~~~l~fF~il~aYyiLRPvRD~l~v~~--G~e~Lp~Lf~~t~~~~l~~~ply~~l~~~~r~sr~r~~~~~~~fF 103 (368)
-..++...+++||...+...+.-++=.++.-+. +.++..++-........+..|+.|++.+ |+.||+.+......+
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~d--r~G~r~~l~~g~~~~ 101 (438)
T PRK10133 24 YIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMK--KLSYKAGIITGLFLY 101 (438)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhCcHHHHHHHHHHH
Confidence 334556677777777776665554444333222 3455666667778899999999999999 999999999888888
Q ss_pred HHHHHHH
Q 017669 104 SVSLLVF 110 (368)
Q Consensus 104 ~~~LL~F 110 (368)
++..+.+
T Consensus 102 ~~~~~l~ 108 (438)
T PRK10133 102 ALGAALF 108 (438)
T ss_pred HHHHHHH
Confidence 7766554
No 50
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=95.82 E-value=0.55 Score=50.71 Aligned_cols=78 Identities=6% Similarity=-0.026 Sum_probs=48.9
Q ss_pred chHhHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHh
Q 017669 286 AILDGLRLIFSSNYLLSVSLFLWLSAVVSSFFYFQKVTVIAMTVSSSLGRRRLLAEINSFIAVFILAGQLTLTGTSFLLL 365 (368)
Q Consensus 286 ~~~~g~~~i~rSpYLl~Ial~v~l~~~vst~lyf~~~~~v~~~~~d~~~rt~ffa~i~~~v~v~tl~~QlflTgrii~~~ 365 (368)
+.+..++.++++|-.+...+...+...+..-+..-....+.+.+.-+.....++ .....+...+++.++.|++++|+
T Consensus 318 ~~~~~~~~Ll~n~~f~~~~l~~~~~~~~~~~~~~~lP~yl~~~~g~s~~~ag~l---~~~~~i~~~~vG~~l~G~l~~r~ 394 (633)
T TIGR00805 318 DFPKIIKRLLCNPIYMLVILAQVIDSLAFNGYITFLPKYLENQYGISSAEANFL---IGVVNLPAAGLGYLIGGFIMKKF 394 (633)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHH---hhhhhhhHHHHHHhhhhheeeee
Confidence 455678899999988888777666655554444434455555554443333322 23344444567888899999988
Q ss_pred c
Q 017669 366 G 366 (368)
Q Consensus 366 G 366 (368)
+
T Consensus 395 ~ 395 (633)
T TIGR00805 395 K 395 (633)
T ss_pred c
Confidence 7
No 51
>PRK12382 putative transporter; Provisional
Probab=95.81 E-value=2.1 Score=41.88 Aligned_cols=74 Identities=7% Similarity=0.009 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHHhhhhh-----hhhhhhhccCcCcchhHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHH
Q 017669 30 LLHSSSCFFFILSAYFVVLP-----LRDEGAISLGLSKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFS 104 (368)
Q Consensus 30 ~l~~~l~fF~il~aYyiLRP-----vRD~l~v~~G~e~Lp~Lf~~t~~~~l~~~ply~~l~~~~r~sr~r~~~~~~~fF~ 104 (368)
+...++..|+...+..+.-| ++|+++++ .+.+-++.........+..|+.|++++ |+.|||++......++
T Consensus 17 ~~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s--~~~~g~~~s~~~~~~~i~~~~~G~l~D--r~g~r~~l~~~~~~~~ 92 (392)
T PRK12382 17 LFRIAFAVFLTYMTVGLPLPVIPLFVHHDLGFG--NTMVGIAVGIQFLATVLTRGYAGRLAD--QYGAKRSALQGMLACG 92 (392)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCCc--HHHHHHHHHHHHHHHHHHhhhhhHHHH--hhcchHHHHHHHHHHH
Confidence 34444455555555566666 35555442 445666667778889999999999999 9999998876655554
Q ss_pred HHH
Q 017669 105 VSL 107 (368)
Q Consensus 105 ~~L 107 (368)
+..
T Consensus 93 ~~~ 95 (392)
T PRK12382 93 LAG 95 (392)
T ss_pred HHH
Confidence 333
No 52
>TIGR00898 2A0119 cation transport protein.
Probab=95.79 E-value=0.069 Score=54.25 Aligned_cols=54 Identities=13% Similarity=0.010 Sum_probs=38.5
Q ss_pred hhhhhhhhhcc-CcCcchhHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHH
Q 017669 48 LPLRDEGAISL-GLSKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFF 103 (368)
Q Consensus 48 RPvRD~l~v~~-G~e~Lp~Lf~~t~~~~l~~~ply~~l~~~~r~sr~r~~~~~~~fF 103 (368)
..++++..++- ......++-...++..++..++.|+++. |+.||+++.+.....
T Consensus 113 ~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~D--r~Grr~~~~~~~~~~ 167 (505)
T TIGR00898 113 STIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSD--RFGRKKVLLLSTLVT 167 (505)
T ss_pred ccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhh--hccchHHHHHHHHHH
Confidence 34555555432 2334556567778899999999999999 999999876655444
No 53
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=95.66 E-value=2.7 Score=42.16 Aligned_cols=45 Identities=11% Similarity=0.042 Sum_probs=34.5
Q ss_pred cCcchhHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHHH
Q 017669 60 LSKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVS 106 (368)
Q Consensus 60 ~e~Lp~Lf~~t~~~~l~~~ply~~l~~~~r~sr~r~~~~~~~fF~~~ 106 (368)
.+..++....-++...+..|+.|++++ |++||+++......+++.
T Consensus 50 ~~~~~~~~s~~~~~~~~~~~~~G~l~d--r~Grr~~l~~~~~~~~~~ 94 (413)
T PRK15403 50 VSLAPASVSLYLAGGMALQWLLGPLSD--RIGRRPVLITGALIFTLA 94 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHH--HcCchHHHHHHHHHHHHH
Confidence 344666666667788889999999999 999999887766555443
No 54
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=95.63 E-value=2.2 Score=40.82 Aligned_cols=58 Identities=19% Similarity=0.193 Sum_probs=40.5
Q ss_pred HHHHHHHHhhhhh-----hhhhhhhccCcCcchhHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHH
Q 017669 37 FFFILSAYFVVLP-----LRDEGAISLGLSKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVL 98 (368)
Q Consensus 37 fF~il~aYyiLRP-----vRD~l~v~~G~e~Lp~Lf~~t~~~~l~~~ply~~l~~~~r~sr~r~~~~ 98 (368)
.|+...++.+..| ++|+++. ..+++-++.+...+...+..|+.|++++ |+.|||.+..
T Consensus 6 ~~~~~~~~~~~~~~l~~~l~~~~g~--s~~~~g~~~~~~~~~~~~~~~~~g~l~D--r~g~r~~~~~ 68 (375)
T TIGR00899 6 AFLTGIAGALQFPTLSLFLSEEVRA--RPAMIGLFYTGSAIVGIAVSQLLATRSD--YQGDRKGLIL 68 (375)
T ss_pred HHHHHHHHHHHhhHHHHHHHcccCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHh--ccCCchHHHH
Confidence 4455555555555 3555443 2455677777777888899999999999 9998886543
No 55
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=95.26 E-value=6.3 Score=43.82 Aligned_cols=54 Identities=13% Similarity=-0.009 Sum_probs=41.1
Q ss_pred hhhhhhhhhhhccCcCcchhHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHH
Q 017669 46 VVLPLRDEGAISLGLSKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFF 103 (368)
Q Consensus 46 iLRPvRD~l~v~~G~e~Lp~Lf~~t~~~~l~~~ply~~l~~~~r~sr~r~~~~~~~fF 103 (368)
++-++.++++++ .++.-++-.+.++.+++..++.|+++. |+.||+.+.+....+
T Consensus 189 ilp~i~~~~gls--~~~~g~l~s~~~lG~iiG~li~G~LsD--R~GRR~~lii~lil~ 242 (742)
T TIGR01299 189 VLPSAEKDLCIP--DSGKGMLGLIVYLGMMVGAFFWGGLAD--KLGRKQCLLICLSVN 242 (742)
T ss_pred HHHHHHHHhCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHH--HhCcHHHHHHHHHHH
Confidence 445555555442 345667778888999999999999999 999999987766555
No 56
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=95.08 E-value=4.6 Score=41.19 Aligned_cols=51 Identities=10% Similarity=0.044 Sum_probs=36.6
Q ss_pred hhhhhhhhccCcCcchhHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHH
Q 017669 49 PLRDEGAISLGLSKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFF 103 (368)
Q Consensus 49 PvRD~l~v~~G~e~Lp~Lf~~t~~~~l~~~ply~~l~~~~r~sr~r~~~~~~~fF 103 (368)
++.++++. ..++.-++.+..+....+..|+.|++++ |++||+.+......+
T Consensus 44 ~i~~~~g~--s~~~~~~~~s~~~~~~~~~~~~~G~l~d--r~g~r~~l~~~~~~~ 94 (455)
T TIGR00892 44 ELQQIFQA--TYSETAWISSIMLAVLYAGGPISSILVN--RFGCRPVVIAGGLLA 94 (455)
T ss_pred HHHHHhCc--chhHHHHHHHHHHHHHHHhhHHHHHHHH--HcCchHHHHhhHHHH
Confidence 44444433 3345667777777778889999999999 999999776655444
No 57
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=95.03 E-value=3 Score=44.35 Aligned_cols=78 Identities=24% Similarity=0.264 Sum_probs=56.9
Q ss_pred chhHHHHHHHHHHHHHHHHhhhhhh--hhhhhhccCcCcchhHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHH
Q 017669 26 ETSALLHSSSCFFFILSAYFVVLPL--RDEGAISLGLSKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFF 103 (368)
Q Consensus 26 E~~~~l~~~l~fF~il~aYyiLRPv--RD~l~v~~G~e~Lp~Lf~~t~~~~l~~~ply~~l~~~~r~sr~r~~~~~~~fF 103 (368)
+++.++.....+++...++..+-|+ ||.+ .+|+...-.+..+..+.+++...+.+++.+ |+++++++......+
T Consensus 219 ~l~~~l~~~~~~~l~~~a~~aLlPl~a~~~l--~~~a~~yGll~a~~gvGai~Gal~~~~l~~--~~~~~~lv~~~~~~~ 294 (524)
T PF05977_consen 219 PLRSVLLRSFLFNLFASAVWALLPLFARDVL--GGGASGYGLLLAAFGVGAILGALLLPRLRR--RLSSRRLVLLASLLF 294 (524)
T ss_pred HHHHHHHHHHHHHHhhhHHHHhhhHHHHHHh--CCcHHHHHHHHHHHHHHHHHHHHHHHHhhc--ccCcchhhHHHHHHH
Confidence 4566666566666667788888885 5644 445666666667777999999999999999 999999887666555
Q ss_pred HHHH
Q 017669 104 SVSL 107 (368)
Q Consensus 104 ~~~L 107 (368)
++.+
T Consensus 295 a~~~ 298 (524)
T PF05977_consen 295 ALAL 298 (524)
T ss_pred HHHH
Confidence 4433
No 58
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=94.91 E-value=1.5 Score=42.75 Aligned_cols=45 Identities=18% Similarity=0.175 Sum_probs=36.5
Q ss_pred cCcchhHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHHH
Q 017669 60 LSKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVS 106 (368)
Q Consensus 60 ~e~Lp~Lf~~t~~~~l~~~ply~~l~~~~r~sr~r~~~~~~~fF~~~ 106 (368)
..+.-++.....+...+..|+.|++++ |+.||+.+......+++.
T Consensus 70 ~~~~~~~~~~~~~~~~i~~~~~g~l~d--~~grr~~~~~~~~~~~~~ 114 (481)
T TIGR00879 70 SSLWGLVVSIFLVGGFIGALFAGWLSD--RFGRKKSLLIIALLFVIG 114 (481)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhHhhh--hhhhHHHHHHHHHHHHHH
Confidence 456777778888999999999999999 999999987666555433
No 59
>PRK10429 melibiose:sodium symporter; Provisional
Probab=94.41 E-value=5.1 Score=41.01 Aligned_cols=76 Identities=13% Similarity=0.075 Sum_probs=42.8
Q ss_pred chHhHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHh
Q 017669 286 AILDGLRLIFSSNYLLSVSLFLWLSAVVSSFFYFQKVTVIAMTVSSSLGRRRLLAEINSFIAVFILAGQLTLTGTSFLLL 365 (368)
Q Consensus 286 ~~~~g~~~i~rSpYLl~Ial~v~l~~~vst~lyf~~~~~v~~~~~d~~~rt~ffa~i~~~v~v~tl~~QlflTgrii~~~ 365 (368)
++++.++.++++|.++.+.+..+++++...+..---.-..+....+++ ..+.+....++..++.+. +.+++.+|+
T Consensus 219 ~~~~~~~~~~~n~~~~~ll~~~~~~~~~~~~~~~~~~y~~~y~~~~~~----~~~~~~~~~~i~~ii~~~-~~~~l~~r~ 293 (473)
T PRK10429 219 TLKDIVALIYKNDQLSCLLGMALAYNIASNIINGFAIYYFTYVIGDAD----LFPYYLSYAGAANLVTLI-LFPRLVKSL 293 (473)
T ss_pred CHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhheeeEEEEECCCHH----HHHHHHHHHHHHHHHHHH-HHHHHHHHc
Confidence 678899999999999887777666655443321110101111112322 233444444455555554 467999988
Q ss_pred c
Q 017669 366 G 366 (368)
Q Consensus 366 G 366 (368)
|
T Consensus 294 g 294 (473)
T PRK10429 294 S 294 (473)
T ss_pred C
Confidence 7
No 60
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=94.35 E-value=7.2 Score=40.15 Aligned_cols=77 Identities=10% Similarity=-0.008 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhhccC--cCcchhHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHHHHH
Q 017669 31 LHSSSCFFFILSAYFVVLPLRDEGAISLG--LSKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVSLL 108 (368)
Q Consensus 31 l~~~l~fF~il~aYyiLRPvRD~l~v~~G--~e~Lp~Lf~~t~~~~l~~~ply~~l~~~~r~sr~r~~~~~~~fF~~~LL 108 (368)
+...+..|+....-.++-..=.++.-+.| .+++.|+-++-.+...+..|++|++++ |+.||+.+......|++..+
T Consensus 9 ~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D--~~Grk~~l~~~~~~~~~~~~ 86 (495)
T PRK14995 9 VIIVLVYIPVAIDATVLHVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGD--RIGFKRLLMLGGTLFGLASL 86 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHH--HhccHHHHHHHHHHHHHHHH
Confidence 33444445554444444443334433333 467899888888899999999999999 99999999888877754443
Q ss_pred H
Q 017669 109 V 109 (368)
Q Consensus 109 ~ 109 (368)
.
T Consensus 87 ~ 87 (495)
T PRK14995 87 A 87 (495)
T ss_pred H
Confidence 3
No 61
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=94.34 E-value=6.6 Score=39.64 Aligned_cols=38 Identities=8% Similarity=0.114 Sum_probs=29.4
Q ss_pred CcCcchhHHHHHHHHHHHHHHHHHHhhcCCCCcc-hhHHHH
Q 017669 59 GLSKLPGLFVGSLILTLIAAPVSTLIFSLPNLSK-AKALVL 98 (368)
Q Consensus 59 G~e~Lp~Lf~~t~~~~l~~~ply~~l~~~~r~sr-~r~~~~ 98 (368)
+.+++-++.....+..++.+|+.|++++ |+.| |+++..
T Consensus 36 s~~~iGl~~a~~~~~~~i~~~~~g~l~d--r~g~~r~~~~~ 74 (418)
T TIGR00889 36 SGAEIGWVYSSTGIAAILMPILVGIIAD--KWLSAQKVYAV 74 (418)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhcccHHHHHH
Confidence 3556777778888999999999999999 9855 545443
No 62
>PRK09848 glucuronide transporter; Provisional
Probab=94.30 E-value=4 Score=41.09 Aligned_cols=77 Identities=5% Similarity=-0.046 Sum_probs=43.0
Q ss_pred chHhHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHh
Q 017669 286 AILDGLRLIFSSNYLLSVSLFLWLSAVVSSFFYFQKVTVIAMTVSSSLGRRRLLAEINSFIAVFILAGQLTLTGTSFLLL 365 (368)
Q Consensus 286 ~~~~g~~~i~rSpYLl~Ial~v~l~~~vst~lyf~~~~~v~~~~~d~~~rt~ffa~i~~~v~v~tl~~QlflTgrii~~~ 365 (368)
++.+.++.++|+|.+....+...++............-...+...++++ ++.+-...+.+..++...+.+++.+|+
T Consensus 216 ~~~~~~~~l~~n~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~----~~~~~~~~~~~~~~~~~~l~~~l~~r~ 291 (448)
T PRK09848 216 SLKISLQTLKRNRPLFMLCIGALCVLISTFAVSASSLFYVRYVLNDTGL----FTVLVLVQNLVGTVASAPLVPGMVARI 291 (448)
T ss_pred CHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHhhhheeeEeeecCChHH----HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5677889999999998776655554443322221111122223334333 333333334444555666788999888
Q ss_pred c
Q 017669 366 G 366 (368)
Q Consensus 366 G 366 (368)
|
T Consensus 292 g 292 (448)
T PRK09848 292 G 292 (448)
T ss_pred C
Confidence 7
No 63
>PRK10091 MFS transport protein AraJ; Provisional
Probab=94.28 E-value=5.9 Score=38.88 Aligned_cols=70 Identities=17% Similarity=0.160 Sum_probs=48.4
Q ss_pred HHHHHHHHHhhhhhhhhhhhhccC--cCcchhHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHHHH
Q 017669 36 CFFFILSAYFVVLPLRDEGAISLG--LSKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVSL 107 (368)
Q Consensus 36 ~fF~il~aYyiLRPvRD~l~v~~G--~e~Lp~Lf~~t~~~~l~~~ply~~l~~~~r~sr~r~~~~~~~fF~~~L 107 (368)
..|+...+.+++-|.=+.+.-+.| .+++-++........++..|+.|++.+ |++||+.+......+++..
T Consensus 11 ~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~d--r~g~r~~~~~~~~~~~~~~ 82 (382)
T PRK10091 11 GTFGLGMAEFGIMGVLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSS--RYSLKHILLFLVALCVIGN 82 (382)
T ss_pred HHHHHHhhHHHHHhChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHc--cCccHHHHHHHHHHHHHHH
Confidence 334444444555555444443333 345667778888999999999999999 9999999877666664433
No 64
>PRK09669 putative symporter YagG; Provisional
Probab=94.23 E-value=2.8 Score=42.25 Aligned_cols=71 Identities=7% Similarity=0.016 Sum_probs=40.7
Q ss_pred chHhHHHHHhhchhHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 017669 286 AILDGLRLIFSSNYLLSVSLFLWLSAVVS-----SFFYFQKVTVIAMTVSSSLGRRRLLAEINSFIAVFILAGQLTLTGT 360 (368)
Q Consensus 286 ~~~~g~~~i~rSpYLl~Ial~v~l~~~vs-----t~lyf~~~~~v~~~~~d~~~rt~ffa~i~~~v~v~tl~~QlflTgr 360 (368)
+.++.++.++|+|.+..+.+..+++.... ...||. +....+++.- +.+ ..++.++.+++..+.++
T Consensus 217 ~~~~~~~~~~~n~~~~~l~~~~~~~~~~~~~~~~~~~y~~-----~~~~~~~~~~----~~~-~~~~~i~~ii~~~~~~~ 286 (444)
T PRK09669 217 SVWKDLKLLLGNSQWRIMFIFNVVLLTAVVTRGGATLYYV-----NYVLLRPDLA----TLF-LVTGMIAGLFGALLSER 286 (444)
T ss_pred CHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHhhhhheee-----eeecCCHHHH----HHH-HHHHHHHHHHHHHHHHH
Confidence 45778999999998877766554443322 122222 1112232211 222 23445556677888889
Q ss_pred HHHHhc
Q 017669 361 SFLLLG 366 (368)
Q Consensus 361 ii~~~G 366 (368)
+.+|+|
T Consensus 287 l~~r~g 292 (444)
T PRK09669 287 LLGKFD 292 (444)
T ss_pred HHHHhC
Confidence 999987
No 65
>PRK03893 putative sialic acid transporter; Provisional
Probab=94.04 E-value=7.6 Score=39.21 Aligned_cols=76 Identities=12% Similarity=0.109 Sum_probs=52.9
Q ss_pred chhHHHHHHHHHHHHHHHHhhhhhhhhhhhhccCc--CcchhHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHH
Q 017669 26 ETSALLHSSSCFFFILSAYFVVLPLRDEGAISLGL--SKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFF 103 (368)
Q Consensus 26 E~~~~l~~~l~fF~il~aYyiLRPvRD~l~v~~G~--e~Lp~Lf~~t~~~~l~~~ply~~l~~~~r~sr~r~~~~~~~fF 103 (368)
..+.+....+.+|+....+..+-|+-+.+.-+.|. ++.-++....++.+.+..|+.|++++ |+.||+.+......+
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d--r~g~r~~~~~~~~~~ 95 (496)
T PRK03893 18 QWKAFSAAWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGD--RYGRRLAMVISIVLF 95 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhCcHHHHHHHHHHH
Confidence 44455566666666667777666665555444444 34556667777888899999999999 999999876655444
No 66
>PRK03699 putative transporter; Provisional
Probab=93.67 E-value=7.9 Score=38.17 Aligned_cols=76 Identities=11% Similarity=0.004 Sum_probs=49.9
Q ss_pred chhHHHHHHHHHHHHHHHHhhhhhhhhhhhhccC--cCcchhHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHH
Q 017669 26 ETSALLHSSSCFFFILSAYFVVLPLRDEGAISLG--LSKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFF 103 (368)
Q Consensus 26 E~~~~l~~~l~fF~il~aYyiLRPvRD~l~v~~G--~e~Lp~Lf~~t~~~~l~~~ply~~l~~~~r~sr~r~~~~~~~fF 103 (368)
+.|.....++.+|+--...+.+-++-+++.-+.| .++..++.........+..++.|++.+ |++||+.+......+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~d--r~g~r~~~~~~~~~~ 82 (394)
T PRK03699 5 RIKLTWISFLSYALTGALVIVTGMVMGPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLME--IIPLKRQLIFGFALM 82 (394)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhhHHHHHHHHHHHH
Confidence 3445555555555555545555444444443333 345666677777889999999999999 999999876554444
No 67
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=93.58 E-value=6.8 Score=37.15 Aligned_cols=34 Identities=15% Similarity=0.201 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHH
Q 017669 70 SLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSV 105 (368)
Q Consensus 70 t~~~~l~~~ply~~l~~~~r~sr~r~~~~~~~fF~~ 105 (368)
++....+..|+.|++++ |+.|||.+......+++
T Consensus 44 ~~~~~~i~~~~~G~l~d--r~g~r~~l~~~~~~~~~ 77 (394)
T TIGR00883 44 GFLARPLGAIVFGHFGD--RIGRKKTLVITLLMMGI 77 (394)
T ss_pred HHHHhhhHHHHhhhhhh--hhhhHHHHHHHHHHHHH
Confidence 33444567899999999 99999998766555533
No 68
>PRK10489 enterobactin exporter EntS; Provisional
Probab=93.40 E-value=5.4 Score=39.52 Aligned_cols=39 Identities=10% Similarity=0.080 Sum_probs=26.5
Q ss_pred cCcchhHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHH
Q 017669 60 LSKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIH 100 (368)
Q Consensus 60 ~e~Lp~Lf~~t~~~~l~~~ply~~l~~~~r~sr~r~~~~~~ 100 (368)
.+..-++.....++.++..++.+++.+ |.++++.+....
T Consensus 258 ~~~~g~~~~~~~~g~~ig~~~~~~l~~--~~~~~~~l~~~~ 296 (417)
T PRK10489 258 AAQIGLLYAAVPLGAALGALTSGWLAH--SARPGLLMLLST 296 (417)
T ss_pred hhHhHHHHHHHHHHHHHHHHHHHHhhh--ccCcchHHHHHH
Confidence 344555556666778888889999988 766666554444
No 69
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=93.36 E-value=6.4 Score=39.69 Aligned_cols=39 Identities=3% Similarity=-0.170 Sum_probs=31.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHH
Q 017669 63 LPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFF 103 (368)
Q Consensus 63 Lp~Lf~~t~~~~l~~~ply~~l~~~~r~sr~r~~~~~~~fF 103 (368)
+-.+..+.++..++..++.|++.. |++||+.+.......
T Consensus 78 ~g~~~s~~~~~~~~~~~~~g~l~d--r~g~r~~l~~~~~~~ 116 (465)
T TIGR00894 78 QGLILSSHFYGQIIIQIPVGYLAG--KYVFKWSIGIGMFLS 116 (465)
T ss_pred hhHHHHHHHHHHHHHHcchHHHHH--HhCcchhhHHHHHHH
Confidence 445667777889999999999999 999999887665544
No 70
>PRK03633 putative MFS family transporter protein; Provisional
Probab=92.02 E-value=13 Score=36.39 Aligned_cols=74 Identities=9% Similarity=0.027 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhhcc--CcCcchhHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHH
Q 017669 30 LLHSSSCFFFILSAYFVVLPLRDEGAISL--GLSKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSV 105 (368)
Q Consensus 30 ~l~~~l~fF~il~aYyiLRPvRD~l~v~~--G~e~Lp~Lf~~t~~~~l~~~ply~~l~~~~r~sr~r~~~~~~~fF~~ 105 (368)
+...++..|+...+..++-|.-..+.-+. ..++.-++..+..+...+..|+.|++++ |+.||+.+......+++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~d--r~g~k~~~~~~~~~~~~ 83 (381)
T PRK03633 8 VLLLLCGLLLLTLAIAVLNTLVPLWLAQEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIK--RIGFNRSYYLASLIFAA 83 (381)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHH--HHHHHHHHHHHHHHHHH
Confidence 34444555555555555555444443333 3456777778888999999999999999 99999988776555543
No 71
>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.01 E-value=0.91 Score=47.41 Aligned_cols=44 Identities=11% Similarity=0.035 Sum_probs=37.9
Q ss_pred HHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Q 017669 290 GLRLIFSSNYLLSVSLFLWLSAVVSSFFYFQKVTVIAMTVSSSL 333 (368)
Q Consensus 290 g~~~i~rSpYLl~Ial~v~l~~~vst~lyf~~~~~v~~~~~d~~ 333 (368)
+++.+++-||.+.++.=+...++...|+|=.-.-...|++..+.
T Consensus 262 ~~~~Ll~dP~I~~~agai~~~n~~lafLePtlslwm~e~m~~p~ 305 (464)
T KOG3764|consen 262 PMWSLLMDPYILLIAGAITFSNSSLAFLEPTLSLWMLETMFTPG 305 (464)
T ss_pred cHHHHHhCchHhhhhcchhhccchHHHhCcccHHHHHHhccCCC
Confidence 36889999999999999999999999999888887777765443
No 72
>PF13347 MFS_2: MFS/sugar transport protein
Probab=91.94 E-value=0.75 Score=46.10 Aligned_cols=76 Identities=14% Similarity=0.096 Sum_probs=41.5
Q ss_pred chHhHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHh
Q 017669 286 AILDGLRLIFSSNYLLSVSLFLWLSAVVSSFFYFQKVTVIAMTVSSSLGRRRLLAEINSFIAVFILAGQLTLTGTSFLLL 365 (368)
Q Consensus 286 ~~~~g~~~i~rSpYLl~Ial~v~l~~~vst~lyf~~~~~v~~~~~d~~~rt~ffa~i~~~v~v~tl~~QlflTgrii~~~ 365 (368)
+.++.++.++|+|++..+.+...+.....++.---..=..+....+++ ..+.+..+..+.++ +-..+.+++.+|+
T Consensus 213 ~~~~~~~~~~~nr~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~~----~~~~~~~~~~~~~~-v~~~~~~~l~~r~ 287 (428)
T PF13347_consen 213 SLRDSLRSLFRNRPFRILLLAFFLQWLAFALMNTFLPYYFTYVLGNEG----LISIFMLIFFVASI-VGSPLWGRLSKRF 287 (428)
T ss_pred ccccchhhhcccchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCch----hhHHHHHHHHHHHH-HHHHHHHHHHHHc
Confidence 567788999999998866666555433333211111112222233332 23333334444444 4555568999998
Q ss_pred c
Q 017669 366 G 366 (368)
Q Consensus 366 G 366 (368)
|
T Consensus 288 g 288 (428)
T PF13347_consen 288 G 288 (428)
T ss_pred c
Confidence 8
No 73
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=90.91 E-value=10 Score=37.11 Aligned_cols=38 Identities=13% Similarity=0.095 Sum_probs=28.8
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHH
Q 017669 61 SKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIH 100 (368)
Q Consensus 61 e~Lp~Lf~~t~~~~l~~~ply~~l~~~~r~sr~r~~~~~~ 100 (368)
++.-.+.....+.+++..++.+++.+ |+.|++.+...+
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~g~l~d--r~g~~~~~~~~~ 292 (406)
T PRK11551 255 SQAGLVQIAFNIGGALGSLLIGALMD--RLRPRRVVLLIY 292 (406)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHH--HHhHHHHHHHHH
Confidence 34445555566788899999999999 999998876533
No 74
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=90.82 E-value=13 Score=34.30 Aligned_cols=68 Identities=13% Similarity=0.052 Sum_probs=47.6
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhcc--CcCcchhHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHH
Q 017669 35 SCFFFILSAYFVVLPLRDEGAISL--GLSKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFS 104 (368)
Q Consensus 35 l~fF~il~aYyiLRPvRD~l~v~~--G~e~Lp~Lf~~t~~~~l~~~ply~~l~~~~r~sr~r~~~~~~~fF~ 104 (368)
+..++...++++..|.-....-+. +.++.-++.........+..|+.|++++ |++||+.+........
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d--~~g~r~~~~~~~~~~~ 75 (352)
T cd06174 6 LGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSD--RFGRRRVLLLGLLLFA 75 (352)
T ss_pred HHHHHHHHhhhhhHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHH--HhCCchhhHHHHHHHH
Confidence 344555566666666655554433 4455667677778889999999999999 9999997655554443
No 75
>PRK09952 shikimate transporter; Provisional
Probab=90.61 E-value=11 Score=38.01 Aligned_cols=27 Identities=7% Similarity=0.105 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHhhcCCCCcchhHHHHH
Q 017669 71 LILTLIAAPVSTLIFSLPNLSKAKALVLI 99 (368)
Q Consensus 71 ~~~~l~~~ply~~l~~~~r~sr~r~~~~~ 99 (368)
..++++..|+.|++++ |++|+|.+...
T Consensus 296 g~~~~i~~~~~g~l~D--r~grr~~~~~~ 322 (438)
T PRK09952 296 GGLSCLTIPCFAWLAD--RFGRRRVYITG 322 (438)
T ss_pred HHHHHHHHHHHHHHHH--HhCchHHHHHH
Confidence 3556778899999999 99999886544
No 76
>PRK11462 putative transporter; Provisional
Probab=90.43 E-value=23 Score=36.36 Aligned_cols=71 Identities=13% Similarity=0.062 Sum_probs=37.5
Q ss_pred chHhHHHHHhhchhHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 017669 286 AILDGLRLIFSSNYLLSVSLFLWLSAVV-----SSFFYFQKVTVIAMTVSSSLGRRRLLAEINSFIAVFILAGQLTLTGT 360 (368)
Q Consensus 286 ~~~~g~~~i~rSpYLl~Ial~v~l~~~v-----st~lyf~~~~~v~~~~~d~~~rt~ffa~i~~~v~v~tl~~QlflTgr 360 (368)
+.++.++.++++|+++.++...+++.+. +...||-. .. ..+++... .+.....+.++ +-..+.++
T Consensus 216 ~~~~~l~~~~~Nk~~~~l~~~~~~~~~~~~~~~~~~~y~~~-y~----~g~~~~~~----~~l~~~~i~~i-ig~~l~~~ 285 (460)
T PRK11462 216 SMREDLRDIWQNDQWRIVGLLTIFNILAVCVRGGAMMYYVT-WI----LGTPEVFV----AFLTTYCVGNL-IGSALAKP 285 (460)
T ss_pred CHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhHhhhhhh-hh----cCChHHHH----HHHHHHHHHHH-HHHHHHHH
Confidence 4677899999999998776554443332 23334332 11 23333222 22223333333 23456778
Q ss_pred HHHHhc
Q 017669 361 SFLLLG 366 (368)
Q Consensus 361 ii~~~G 366 (368)
+.+|+|
T Consensus 286 l~~r~g 291 (460)
T PRK11462 286 LTDWKC 291 (460)
T ss_pred HHHHhC
Confidence 887765
No 77
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=89.81 E-value=7.3 Score=36.95 Aligned_cols=66 Identities=14% Similarity=0.257 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHhhhhhh-----hhhhhhccCcCcchhHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHH
Q 017669 30 LLHSSSCFFFILSAYFVVLPL-----RDEGAISLGLSKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLI 99 (368)
Q Consensus 30 ~l~~~l~fF~il~aYyiLRPv-----RD~l~v~~G~e~Lp~Lf~~t~~~~l~~~ply~~l~~~~r~sr~r~~~~~ 99 (368)
++....+.++....++..-+. +|..+. +.++..++.....+..++..++.+++++ |++||+.+...
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~g~l~d--r~g~~~~~~~~ 291 (394)
T TIGR00883 221 FLLGLGLVIATTTTFYLITTYLPTYLTQTLGL--SANSALLVLMLSLILFFITIPLSGALSD--RIGRRPVLIIF 291 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--ChhHHHHHHHHHHHHHHHHHHHHHHHHH--HhchHHHHHHH
Confidence 444444555544555443322 233322 2233444455556778889999999999 99999976544
No 78
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=89.51 E-value=24 Score=35.18 Aligned_cols=54 Identities=19% Similarity=0.017 Sum_probs=39.6
Q ss_pred hhhhhhhhhhhccCcCcchhHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHH
Q 017669 46 VVLPLRDEGAISLGLSKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFF 103 (368)
Q Consensus 46 iLRPvRD~l~v~~G~e~Lp~Lf~~t~~~~l~~~ply~~l~~~~r~sr~r~~~~~~~fF 103 (368)
++-+++++.+++ .+++-++-...+....+..++.|++++ |+.||+++......+
T Consensus 13 ~lp~i~~~~~~s--~~~~g~~~s~~~~g~~i~~~~~G~l~D--r~grr~~~~~~~~~~ 66 (368)
T TIGR00903 13 VLSLVAEDIDVS--KEELGLLAITYPAAFLALTIPSGLLLD--RAFKRWFLFGSLATF 66 (368)
T ss_pred hHHHHHHHhCcC--HHHHHHHHHHHHHHHHHHHHHHHHHHH--HccchHHHHHHHHHH
Confidence 556677777664 345667767767888888999999999 999988765443333
No 79
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=89.44 E-value=17 Score=36.54 Aligned_cols=34 Identities=9% Similarity=0.366 Sum_probs=24.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHH
Q 017669 63 LPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVL 98 (368)
Q Consensus 63 Lp~Lf~~t~~~~l~~~ply~~l~~~~r~sr~r~~~~ 98 (368)
..........+..+..++.|++++ |+.||+.+.+
T Consensus 281 ~~~~~~i~~~~~~i~~~~~G~l~D--r~grr~~~~~ 314 (432)
T PRK10406 281 ASGIMTAALFVFMLIQPLIGALSD--KIGRRTSMLC 314 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HcCchHHHHH
Confidence 334444445666777899999999 9999987643
No 80
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=89.39 E-value=29 Score=35.98 Aligned_cols=88 Identities=26% Similarity=0.233 Sum_probs=70.5
Q ss_pred CCCchhHHHHHHHHHHHHHHHHhhhhhhhhhhhhccCcCc--chhHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHH
Q 017669 23 HPHETSALLHSSSCFFFILSAYFVVLPLRDEGAISLGLSK--LPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIH 100 (368)
Q Consensus 23 ~~~E~~~~l~~~l~fF~il~aYyiLRPvRD~l~v~~G~e~--Lp~Lf~~t~~~~l~~~ply~~l~~~~r~sr~r~~~~~~ 100 (368)
++.....++...++-|++-+.=++.=++=.+++=+.|+++ -=++-+.......+..|+-+.+.+ |++|||++-...
T Consensus 8 ~~~~~~~l~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~--r~~Rr~lLl~~l 85 (394)
T COG2814 8 RKPMWLALLALALAAFAIGTTEFVPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTG--RLERRRLLLGLL 85 (394)
T ss_pred cccchHHHHHHHHHHHHHHhHHHHHHhchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHc--ccchHHHHHHHH
Confidence 4556678899999999999999988777777776665554 335557777889999999999999 999999999999
Q ss_pred HHHHHHHHHHHH
Q 017669 101 RFFSVSLLVFFL 112 (368)
Q Consensus 101 ~fF~~~LL~F~~ 112 (368)
..|+++=++-++
T Consensus 86 ~lFi~~n~l~al 97 (394)
T COG2814 86 ALFIVSNLLSAL 97 (394)
T ss_pred HHHHHHHHHHHH
Confidence 888776554433
No 81
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=88.62 E-value=27 Score=34.60 Aligned_cols=59 Identities=14% Similarity=0.119 Sum_probs=44.6
Q ss_pred hhhhhhhhhccCcCcchhHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHH
Q 017669 48 LPLRDEGAISLGLSKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVSLLVF 110 (368)
Q Consensus 48 RPvRD~l~v~~G~e~Lp~Lf~~t~~~~l~~~ply~~l~~~~r~sr~r~~~~~~~fF~~~LL~F 110 (368)
-++++++.+ +.++.-++.+.......+..|+.|++.+ |++||+++......+++..+..
T Consensus 33 p~i~~~~~~--s~~~~g~~~s~~~~~~~l~~~~~g~l~d--r~G~r~~l~~~~~l~~~~~~~~ 91 (393)
T PRK09705 33 PQLRQASGM--SFSVAALLTALPVVTMGGLALAGSWLHQ--HVSERRSVAISLLLIAVGALMR 91 (393)
T ss_pred HHHHHHhCC--CHHHHHHHHHHHHHHHHHHhhhhHHHHH--HhCchHHHHHHHHHHHHHHHHH
Confidence 344444433 3445666667778889999999999999 9999999999888886666544
No 82
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=88.50 E-value=26 Score=34.24 Aligned_cols=44 Identities=7% Similarity=-0.128 Sum_probs=30.2
Q ss_pred CcCcchhHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHH
Q 017669 59 GLSKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFS 104 (368)
Q Consensus 59 G~e~Lp~Lf~~t~~~~l~~~ply~~l~~~~r~sr~r~~~~~~~fF~ 104 (368)
|.++..+.........++..++.+++.+ |++|+|.+.......+
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~g~l~~--r~~~~~~~~~~~~~~~ 290 (399)
T PRK05122 247 GWDGAALALTLFGVAFVGARLLFGNLIN--RLGGLRVAIVSLLVEI 290 (399)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHH--HhccHHHHHHHHHHHH
Confidence 3344444445555667778899999999 9999987765555443
No 83
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=88.22 E-value=14 Score=37.63 Aligned_cols=28 Identities=18% Similarity=0.061 Sum_probs=19.5
Q ss_pred CcCcchhHHHHHHHHHHHHHHHHHHhhc
Q 017669 59 GLSKLPGLFVGSLILTLIAAPVSTLIFS 86 (368)
Q Consensus 59 G~e~Lp~Lf~~t~~~~l~~~ply~~l~~ 86 (368)
+.++.-.+.....+..++..|+-+++..
T Consensus 274 s~~~~g~~~~~~~~~~~~~~~~~g~l~d 301 (455)
T TIGR00892 274 DEYEAAFLLSIIGFVDIFARPSCGLIAG 301 (455)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3344445555566777888899999997
No 84
>PRK03893 putative sialic acid transporter; Provisional
Probab=87.13 E-value=18 Score=36.48 Aligned_cols=39 Identities=15% Similarity=0.024 Sum_probs=30.8
Q ss_pred CcCcchhHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHH
Q 017669 59 GLSKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLI 99 (368)
Q Consensus 59 G~e~Lp~Lf~~t~~~~l~~~ply~~l~~~~r~sr~r~~~~~ 99 (368)
+.++..++......++++..++.+|+.+ |++|++.....
T Consensus 309 ~~~~~g~~~~~~~~~~~~g~~~~g~l~d--r~g~~~~~~~~ 347 (496)
T PRK03893 309 DPHTVANVLFFSGFGAAVGCCVGGFLGD--WLGTRKAYVCS 347 (496)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhcchHHHHHH
Confidence 3445667777777888899999999999 99999876544
No 85
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=87.01 E-value=12 Score=29.59 Aligned_cols=33 Identities=21% Similarity=0.277 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHH
Q 017669 70 SLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFS 104 (368)
Q Consensus 70 t~~~~l~~~ply~~l~~~~r~sr~r~~~~~~~fF~ 104 (368)
..+.+++..|+.+++.+ |++||+.+.......+
T Consensus 7 ~~~~~~~~~~~~g~~~d--~~g~~~~~~~~~~~~~ 39 (141)
T TIGR00880 7 YALGQLIYSPLSGLLTD--RFGRKPVLLVGLFIFV 39 (141)
T ss_pred ehhHHHHHHhhHHHHHh--hcchhHHHHHHHHHHH
Confidence 34677888999999999 9999998766555443
No 86
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=86.99 E-value=37 Score=34.30 Aligned_cols=79 Identities=11% Similarity=0.013 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhhhccC--cCcchhHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHHH
Q 017669 29 ALLHSSSCFFFILSAYFVVLPLRDEGAISLG--LSKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVS 106 (368)
Q Consensus 29 ~~l~~~l~fF~il~aYyiLRPvRD~l~v~~G--~e~Lp~Lf~~t~~~~l~~~ply~~l~~~~r~sr~r~~~~~~~fF~~~ 106 (368)
++....+.||+.-+.+.+.-|+=..+--+.| ..+.-++....+...++.+|+.+++.+ |++||+.+..-...+++.
T Consensus 4 ~~~~~~~~f~~~G~~~~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~--r~G~r~~~~~g~~l~~~g 81 (410)
T TIGR00885 4 PFALITSLFALWGFANDITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMK--KLSYKAGILLGLFLYALG 81 (410)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhCchHHHHHHHHHHHHH
Confidence 3455667788777777666555554433333 334556667888999999999999999 999999987777666555
Q ss_pred HHH
Q 017669 107 LLV 109 (368)
Q Consensus 107 LL~ 109 (368)
.+.
T Consensus 82 ~~l 84 (410)
T TIGR00885 82 AFL 84 (410)
T ss_pred HHH
Confidence 443
No 87
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=86.97 E-value=32 Score=33.60 Aligned_cols=74 Identities=14% Similarity=0.015 Sum_probs=51.9
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhh-----hhhhhccCcCcchhHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHH
Q 017669 28 SALLHSSSCFFFILSAYFVVLPLR-----DEGAISLGLSKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRF 102 (368)
Q Consensus 28 ~~~l~~~l~fF~il~aYyiLRPvR-----D~l~v~~G~e~Lp~Lf~~t~~~~l~~~ply~~l~~~~r~sr~r~~~~~~~f 102 (368)
+.+....+..|.-..++.+..|+= |+.+. ..+++-++.........+..|+.|++++ |+.|||++......
T Consensus 15 ~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~--s~~~~g~~~~~~~~~~~i~~~~~G~l~D--r~g~r~~l~~~~~~ 90 (399)
T PRK05122 15 LRIVSIVMFTFISYLTIGLPLAVLPGYVHDQLGF--SAFLAGLVISLQYLATLLSRPHAGRYAD--TLGPKKAVVFGLCG 90 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc--cHHHHHHHHHHHHHHHHHhchhhHhHHh--ccCCcchHHHHHHH
Confidence 445555666666666666665543 33332 3555677778888899999999999999 99999998776655
Q ss_pred HHH
Q 017669 103 FSV 105 (368)
Q Consensus 103 F~~ 105 (368)
+++
T Consensus 91 ~~~ 93 (399)
T PRK05122 91 CAL 93 (399)
T ss_pred HHH
Confidence 533
No 88
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=86.75 E-value=11 Score=40.00 Aligned_cols=53 Identities=13% Similarity=0.041 Sum_probs=38.5
Q ss_pred hhhhhhhh------ccCcCcchhHH-HHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHH
Q 017669 49 PLRDEGAI------SLGLSKLPGLF-VGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFF 103 (368)
Q Consensus 49 PvRD~l~v------~~G~e~Lp~Lf-~~t~~~~l~~~ply~~l~~~~r~sr~r~~~~~~~fF 103 (368)
.+|.+..+ =++.|..++.. .+....+++..+++.++++ |+.|++++.+.....
T Consensus 253 ~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~--~~gkk~~~~~~~~~~ 312 (467)
T COG2211 253 NIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVK--KFGKKKLFLIGLLLL 312 (467)
T ss_pred HHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHH--HhchHHHHHHHHHHH
Confidence 34555544 23677788766 6666777777999999999 999999987764333
No 89
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=86.25 E-value=25 Score=34.71 Aligned_cols=42 Identities=14% Similarity=0.127 Sum_probs=28.7
Q ss_pred cCcchhHHHH-HHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHH
Q 017669 60 LSKLPGLFVG-SLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFF 103 (368)
Q Consensus 60 ~e~Lp~Lf~~-t~~~~l~~~ply~~l~~~~r~sr~r~~~~~~~fF 103 (368)
.++.-++... ....+++..++.+++.+ |++|+|.+.......
T Consensus 244 ~~~~g~~~~~~~~~~~i~g~~~~g~l~~--r~g~~~~l~~~~~~~ 286 (402)
T PRK11902 244 AGEVGIVNKTLGLAATIVGALAGGTLMV--RLGLYRSLMLFGVLQ 286 (402)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHH--HHhHHHHHHHHHHHH
Confidence 4445555433 34567888999999999 999998765444333
No 90
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=86.05 E-value=50 Score=34.91 Aligned_cols=51 Identities=10% Similarity=0.185 Sum_probs=36.5
Q ss_pred hhhhhhhhccCcCcchhHHHHHHHHHHHHHHHHHHhhcCCC----CcchhHHHHHHHHH
Q 017669 49 PLRDEGAISLGLSKLPGLFVGSLILTLIAAPVSTLIFSLPN----LSKAKALVLIHRFF 103 (368)
Q Consensus 49 PvRD~l~v~~G~e~Lp~Lf~~t~~~~l~~~ply~~l~~~~r----~sr~r~~~~~~~fF 103 (368)
|.=++++++ ......++...-+..++..|+.|+++. | +.|||.+.+.-...
T Consensus 29 ~yl~~lg~~--~~~~~~i~~~~~l~~~i~~Pi~G~lSD--r~~sr~GRRrp~il~g~~~ 83 (477)
T TIGR01301 29 PYVQELGIP--HAWASIIWLCGPLSGLLVQPLVGYLSD--RCTSRFGRRRPFIAAGAAL 83 (477)
T ss_pred HHHHHcCCC--HHHHHHHHHHHHHHHHHHHhHeeehhc--CCCCCCCChHHHHHHHHHH
Confidence 344444442 245667777778999999999999998 6 99999886543333
No 91
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=85.95 E-value=44 Score=34.17 Aligned_cols=73 Identities=12% Similarity=0.050 Sum_probs=43.6
Q ss_pred HHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcC
Q 017669 291 LRLIFSSNYLLSVSLFLWLSAVVSSFFYFQKVTVIAMTVSSSLGRRRLLAEINSFIAVFILAGQLTLTGTSFLLLGL 367 (368)
Q Consensus 291 ~~~i~rSpYLl~Ial~v~l~~~vst~lyf~~~~~v~~~~~d~~~rt~ffa~i~~~v~v~tl~~QlflTgrii~~~Gv 367 (368)
...++|+|..+...+...+.+......|-=-.-.+++.-..+.+.. | .-..+++++=+.-++..+|+++|+|.
T Consensus 200 ~~~llk~~~~~~Fll~~~l~~~~~~~~~~f~~~yl~~~gg~~~~~~---g-~~~~l~~~aEi~~f~~~~~~~~r~g~ 272 (400)
T PF03825_consen 200 ALKLLKNPRFLVFLLAAFLIGISHAAYYTFFSIYLQELGGYSGSTI---G-ILWALGVVAEIPFFFFSGRFLKRFGI 272 (400)
T ss_pred HHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhhHH---H-HHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence 4579999998876666666555555443333334555542122211 1 12235566666777889999999984
No 92
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=85.40 E-value=2.9 Score=39.20 Aligned_cols=71 Identities=24% Similarity=0.342 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHHhhhhhh--hhhhhhccCcCcchhHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHH
Q 017669 30 LLHSSSCFFFILSAYFVVLPL--RDEGAISLGLSKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFF 103 (368)
Q Consensus 30 ~l~~~l~fF~il~aYyiLRPv--RD~l~v~~G~e~Lp~Lf~~t~~~~l~~~ply~~l~~~~r~sr~r~~~~~~~fF 103 (368)
.+..+++.++....+...-|. +|..+.+ |..+.-+++......+.+..++.+++++ |+++++.........
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~ 283 (352)
T PF07690_consen 211 LLIAFFLFFFVFSGFSFFLPLYLQEVLGFS-GPSQAGLLFSIFGIVGIIGSLLAGRLSD--RFGRRRRLLIAILLL 283 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCHHHHCC-THHHHHHHHHHHHHHHHHHHHHHHHHHH--HTTCHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHhhcccchhhhhccCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HcCcHHHHHHHHHHH
Confidence 344444444444455555565 7777766 5566666666667777888999999999 999887776666555
No 93
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=85.33 E-value=55 Score=34.77 Aligned_cols=76 Identities=22% Similarity=0.140 Sum_probs=47.2
Q ss_pred chHhHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 017669 286 AILDGLRLIFSSNYLLSVSLFLWLSAVVSSFFYFQKVTVIAMTV-SSSLGRRRLLAEINSFIAVFILAGQLTLTGTSFLL 364 (368)
Q Consensus 286 ~~~~g~~~i~rSpYLl~Ial~v~l~~~vst~lyf~~~~~v~~~~-~d~~~rt~ffa~i~~~v~v~tl~~QlflTgrii~~ 364 (368)
...+.+..++++|=++.++++.+++....++ +.-+--.| ..--.+...+..+...+...+.++...++.++.+|
T Consensus 224 ~~~~~~~~~~~Nrp~~~~l~~~l~~~~~~~i-----~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~ 298 (467)
T COG2211 224 KLKDSFLLIFKNRPLLLLLLMNLLLFIAFNI-----RGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKK 298 (467)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHHHHHHH-----HhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 4566788899999999888865554443221 22222222 23333344455555566666777777888899999
Q ss_pred hc
Q 017669 365 LG 366 (368)
Q Consensus 365 ~G 366 (368)
+|
T Consensus 299 ~g 300 (467)
T COG2211 299 FG 300 (467)
T ss_pred hc
Confidence 87
No 94
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=83.91 E-value=15 Score=41.02 Aligned_cols=33 Identities=15% Similarity=0.120 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHH
Q 017669 69 GSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFF 103 (368)
Q Consensus 69 ~t~~~~l~~~ply~~l~~~~r~sr~r~~~~~~~fF 103 (368)
...++.++..++.++++. |++|++.+.......
T Consensus 603 l~~l~~i~G~il~g~L~D--r~GRr~~l~~~~~ls 635 (742)
T TIGR01299 603 LGTLAVLPGNIVSALLMD--KIGRLRMLAGSMVLS 635 (742)
T ss_pred HHHHHHHHHHHHHHHHHH--HhCCHHHHHHHHHHH
Confidence 334777888999999999 999999975544333
No 95
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=82.12 E-value=58 Score=34.25 Aligned_cols=39 Identities=13% Similarity=0.135 Sum_probs=28.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHhhcCCCCcch--hHHHHHHHHH
Q 017669 63 LPGLFVGSLILTLIAAPVSTLIFSLPNLSKA--KALVLIHRFF 103 (368)
Q Consensus 63 Lp~Lf~~t~~~~l~~~ply~~l~~~~r~sr~--r~~~~~~~fF 103 (368)
+=.+...+-+.+++.+.+++++.+ |++-+ +.+.......
T Consensus 319 l~~~~l~~~i~a~~Ga~~~g~l~~--r~g~k~~~~l~~~l~~~ 359 (477)
T PF11700_consen 319 LIVFGLVVQIVAIIGALLFGWLQD--RFGPKTKRTLLISLILW 359 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HhCCchhHHHHHHHHHH
Confidence 334446666899999999999999 99888 6655544443
No 96
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=80.58 E-value=31 Score=33.46 Aligned_cols=37 Identities=5% Similarity=-0.030 Sum_probs=27.6
Q ss_pred hHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHH
Q 017669 65 GLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFF 103 (368)
Q Consensus 65 ~Lf~~t~~~~l~~~ply~~l~~~~r~sr~r~~~~~~~fF 103 (368)
++......+.++..++.+++.+ |++||+.+.......
T Consensus 323 ~~~~~~~~~~~~~~~~~g~l~d--~~~~~~~~~~~~~~~ 359 (481)
T TIGR00879 323 LVSIIVGAVNFAFTFVAIFLVD--RFGRRPLLLIGAAGM 359 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HhcchHHHHHHHHHH
Confidence 3334555677888999999999 999999876654444
No 97
>PF13347 MFS_2: MFS/sugar transport protein
Probab=79.66 E-value=16 Score=36.51 Aligned_cols=46 Identities=9% Similarity=0.230 Sum_probs=36.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHH
Q 017669 63 LPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVSLLVF 110 (368)
Q Consensus 63 Lp~Lf~~t~~~~l~~~ply~~l~~~~r~sr~r~~~~~~~fF~~~LL~F 110 (368)
...+.....+.+++..|+.+++++ |++|+|.....+..+++..+.+
T Consensus 262 ~~~~~~~~~~~~~v~~~~~~~l~~--r~gk~~~~~~~~~~~~~~~~~~ 307 (428)
T PF13347_consen 262 ISIFMLIFFVASIVGSPLWGRLSK--RFGKKKVYIIGLLLAALGFLLL 307 (428)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH--HccceeehhhhHHHHHHHHHHH
Confidence 344446778889999999999999 9999999988888886555544
No 98
>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]
Probab=79.57 E-value=14 Score=41.16 Aligned_cols=77 Identities=16% Similarity=0.155 Sum_probs=53.6
Q ss_pred chHhHHHHHhhchhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 017669 286 AILDGLRLIFSSNYLLSVSLF-LWLSAVVSSFFYFQKVTVIAMTVSSSLGRRRLLAEINSFIAVFILAGQLTLTGTSFLL 364 (368)
Q Consensus 286 ~~~~g~~~i~rSpYLl~Ial~-v~l~~~vst~lyf~~~~~v~~~~~d~~~rt~ffa~i~~~v~v~tl~~QlflTgrii~~ 364 (368)
.+...++.++++|=.++..+- +.-..++.-+.-|. -..++++|.-++.+..++ ...+++.+.++-.+++|.|++|
T Consensus 380 dfp~s~~~ll~N~if~~~~l~~~~~~~~~~G~~tFl-PKyLE~Qfg~sas~An~l---~G~i~vp~~~~Gi~lGG~iikk 455 (735)
T KOG3626|consen 380 DFPKSIKRLLSNPIFMLVVLASVIESLAITGYITFL-PKYLETQFGISASLANIL---TGSIGVPAAAVGIFLGGLIIKK 455 (735)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHHHhhHHHhh-HHHHHHHcCCCHHHHHHH---hhhhhhhhhhhhhhccceeeee
Confidence 577789999999955555444 44444444455554 668888887666655433 2367788888999999999998
Q ss_pred hc
Q 017669 365 LG 366 (368)
Q Consensus 365 ~G 366 (368)
|-
T Consensus 456 fk 457 (735)
T KOG3626|consen 456 FK 457 (735)
T ss_pred ec
Confidence 74
No 99
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=79.32 E-value=59 Score=30.95 Aligned_cols=27 Identities=11% Similarity=0.172 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHhhcCCCCcchhHHHHHH
Q 017669 72 ILTLIAAPVSTLIFSLPNLSKAKALVLIH 100 (368)
Q Consensus 72 ~~~l~~~ply~~l~~~~r~sr~r~~~~~~ 100 (368)
...++..++.+++.+ |++|++.+....
T Consensus 246 ~~~~~~~~~~g~l~~--r~g~~~~~~~~~ 272 (375)
T TIGR00899 246 GLEIPFMLLAGYLIK--RFGKRRLMLLAA 272 (375)
T ss_pred HHHHHHHHhHHHHHH--HhcchhHHHHHH
Confidence 445667789999999 999999876543
No 100
>PRK09952 shikimate transporter; Provisional
Probab=77.38 E-value=85 Score=31.68 Aligned_cols=36 Identities=11% Similarity=0.182 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHHH
Q 017669 69 GSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVS 106 (368)
Q Consensus 69 ~t~~~~l~~~ply~~l~~~~r~sr~r~~~~~~~fF~~~ 106 (368)
.+++...+..+++|++.. |+.||+.+......+++.
T Consensus 72 ~~~~~~~~g~~~~G~l~D--r~Grr~~l~~~~~~~~~~ 107 (438)
T PRK09952 72 VGFLFRPLGGVVFGHFGD--RLGRKRMLMLTVWMMGIA 107 (438)
T ss_pred HHHHHHhhHHHHHHHHHH--hhccHHHHHHHHHHHHHH
Confidence 345556677788999999 999999998776666443
No 101
>PRK15011 sugar efflux transporter B; Provisional
Probab=77.12 E-value=79 Score=31.17 Aligned_cols=34 Identities=9% Similarity=-0.014 Sum_probs=24.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHH
Q 017669 63 LPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVL 98 (368)
Q Consensus 63 Lp~Lf~~t~~~~l~~~ply~~l~~~~r~sr~r~~~~ 98 (368)
..++......+.++..++.|++++ |++|++.+..
T Consensus 254 ~g~~~~~~~~~~i~~~~~~G~l~d--r~g~~~~~~~ 287 (393)
T PRK15011 254 AGVMMGTAAGLEIPTMLIAGYFAK--RLGKRFLMRV 287 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HhChHHHHHH
Confidence 334444444566778899999999 9999986643
No 102
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=76.86 E-value=31 Score=32.40 Aligned_cols=39 Identities=13% Similarity=0.068 Sum_probs=29.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHH
Q 017669 63 LPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFF 103 (368)
Q Consensus 63 Lp~Lf~~t~~~~l~~~ply~~l~~~~r~sr~r~~~~~~~fF 103 (368)
...+.....+..++..++.+++.+ |++|++.+.......
T Consensus 242 ~~~~~~~~~~~~~~~~~~~g~l~d--r~g~~~~~~~~~~~~ 280 (377)
T TIGR00890 242 LVLAVSISSIFNGGGRPFLGALSD--KIGRQKTMSIVFGIS 280 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHhhhhhhhHHHHHH
Confidence 444455556778888999999999 999998876555444
No 103
>TIGR00898 2A0119 cation transport protein.
Probab=76.67 E-value=69 Score=32.50 Aligned_cols=34 Identities=15% Similarity=0.114 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHH
Q 017669 68 VGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFF 103 (368)
Q Consensus 68 ~~t~~~~l~~~ply~~l~~~~r~sr~r~~~~~~~fF 103 (368)
..+.+..+....+.+++.+ |+.||+.+...+...
T Consensus 362 ~~~~~~~i~~~~~~~~l~d--r~grr~~~~~~~~~~ 395 (505)
T TIGR00898 362 FISGLVELPAKLITLLLID--RLGRRYTMAASLLLA 395 (505)
T ss_pred HHHHHHHHHHHHHHHHHHH--HhCCHHHHHHHHHHH
Confidence 3334556677788899999 999998876655444
No 104
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=76.49 E-value=78 Score=32.00 Aligned_cols=25 Identities=0% Similarity=-0.170 Sum_probs=17.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhhcCCCCc
Q 017669 65 GLFVGSLILTLIAAPVSTLIFSLPNLS 91 (368)
Q Consensus 65 ~Lf~~t~~~~l~~~ply~~l~~~~r~s 91 (368)
++........++.+++.|+++. |+.
T Consensus 293 ~~~~~~~~~~~~g~~~~G~l~d--r~~ 317 (452)
T PRK11273 293 WAYFLYEYAGIPGTLLCGWMSD--KVF 317 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHc
Confidence 3333344566677899999999 884
No 105
>PRK12307 putative sialic acid transporter; Provisional
Probab=76.13 E-value=52 Score=32.37 Aligned_cols=35 Identities=14% Similarity=0.136 Sum_probs=26.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHH
Q 017669 63 LPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLI 99 (368)
Q Consensus 63 Lp~Lf~~t~~~~l~~~ply~~l~~~~r~sr~r~~~~~ 99 (368)
...+.....+++++..++.+++.+ |++|++.+...
T Consensus 268 ~~~~~~~~~~~~~~g~~~~g~l~d--r~~~~~~~~~~ 302 (426)
T PRK12307 268 VSNLMTAAAFGTVLGNIVWGLCAD--RIGLKKTFSIG 302 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HhccHHHHHHH
Confidence 444445555778888999999999 99999876543
No 106
>PRK09528 lacY galactoside permease; Reviewed
Probab=75.66 E-value=51 Score=32.69 Aligned_cols=41 Identities=15% Similarity=0.121 Sum_probs=30.0
Q ss_pred cCcchhHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHH
Q 017669 60 LSKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRF 102 (368)
Q Consensus 60 ~e~Lp~Lf~~t~~~~l~~~ply~~l~~~~r~sr~r~~~~~~~f 102 (368)
.+.+-++.........+..++.+++.+ |++|++.+......
T Consensus 261 ~~~~g~~~~~~~~~~~~~~~~~g~l~d--r~g~~~~~~~~~~l 301 (420)
T PRK09528 261 TRVFGYLNSFQVFLEALIMFFAPFIIN--RIGAKNALLLAGTI 301 (420)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH--HhCcchhhHHHHHH
Confidence 344556666566677789999999999 99999986544433
No 107
>TIGR00895 2A0115 benzoate transport.
Probab=75.64 E-value=75 Score=30.16 Aligned_cols=33 Identities=9% Similarity=-0.193 Sum_probs=25.1
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHhhcCCCCcchhH
Q 017669 61 SKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKA 95 (368)
Q Consensus 61 e~Lp~Lf~~t~~~~l~~~ply~~l~~~~r~sr~r~ 95 (368)
++.-++.....+.+++..++.+++++ |++|++.
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~ 317 (398)
T TIGR00895 285 SLAATGGALFNFGGVIGSIIFGWLAD--RLGPRVT 317 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh--hcchHHH
Confidence 33445556666788999999999999 9998833
No 108
>PRK10504 putative transporter; Provisional
Probab=75.61 E-value=93 Score=31.24 Aligned_cols=40 Identities=5% Similarity=0.029 Sum_probs=28.8
Q ss_pred cchhHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHH
Q 017669 62 KLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFF 103 (368)
Q Consensus 62 ~Lp~Lf~~t~~~~l~~~ply~~l~~~~r~sr~r~~~~~~~fF 103 (368)
..-++.....+..++..++-+++.+ |++|++.+.......
T Consensus 298 ~~g~~~~~~~~~~~~~~~~~~~l~~--r~g~~~~~~~~~~~~ 337 (471)
T PRK10504 298 HAGLMMIPMVLGSMGMKRIVVQVVN--RFGYRRVLVATTLGL 337 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HcCchHHHHHHHHHH
Confidence 3444445556667777799999999 999999876555444
No 109
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=74.47 E-value=62 Score=30.31 Aligned_cols=39 Identities=10% Similarity=0.031 Sum_probs=29.5
Q ss_pred CcCcchhHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHH
Q 017669 59 GLSKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLI 99 (368)
Q Consensus 59 G~e~Lp~Lf~~t~~~~l~~~ply~~l~~~~r~sr~r~~~~~ 99 (368)
+.++..++.....+.+++..++.+++.+ |.+|++.+...
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~ 283 (365)
T TIGR00900 245 GSTHYGWVLAAFGLGALLGALLLGLLGR--YFKRMALMTGA 283 (365)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHH--HhchhHHHHHH
Confidence 3444555556666788899999999999 99998876543
No 110
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=72.23 E-value=1.2e+02 Score=31.07 Aligned_cols=32 Identities=19% Similarity=0.299 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHH
Q 017669 67 FVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIH 100 (368)
Q Consensus 67 f~~t~~~~l~~~ply~~l~~~~r~sr~r~~~~~~ 100 (368)
.....+.+++..|+.|++++ |+.|++.+....
T Consensus 292 ~~~~~~~~~~~~~~~g~l~d--r~grr~~~~~~~ 323 (490)
T PRK10642 292 IIAIMIGMLFVQPVMGLLSD--RFGRRPFVILGS 323 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HhccHHHHHHHH
Confidence 35556778888999999999 999998764443
No 111
>PRK09669 putative symporter YagG; Provisional
Probab=71.42 E-value=56 Score=32.87 Aligned_cols=37 Identities=19% Similarity=0.302 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHH
Q 017669 66 LFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFS 104 (368)
Q Consensus 66 Lf~~t~~~~l~~~ply~~l~~~~r~sr~r~~~~~~~fF~ 104 (368)
+.....+.+++..|+.+|+++ |++|++...+....++
T Consensus 269 ~~~~~~i~~ii~~~~~~~l~~--r~gk~~~~~~~~~~~~ 305 (444)
T PRK09669 269 FLVTGMIAGLFGALLSERLLG--KFDRVRAFKWTIVAFV 305 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HhChHHHHHHHHHHHH
Confidence 335556777888999999999 9999998876655443
No 112
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=70.49 E-value=1.1e+02 Score=29.88 Aligned_cols=73 Identities=10% Similarity=-0.141 Sum_probs=47.9
Q ss_pred HHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhc
Q 017669 290 GLRLIFSSNYLLSVSLFLWLSAVVSSFFYFQKVTVIAMTVSSSLGRRRLLAEINSFIAVFILAGQLTLTGTSFLLLG 366 (368)
Q Consensus 290 g~~~i~rSpYLl~Ial~v~l~~~vst~lyf~~~~~v~~~~~d~~~rt~ffa~i~~~v~v~tl~~QlflTgrii~~~G 366 (368)
.++.++|+|.+..+.+...++.......|--..-..++..=++++ .|.+....+++..+.+.++.||+.+|+|
T Consensus 200 ~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~G~s~~~----ig~~~~~~~~~~~~~g~~~~g~l~~r~g 272 (390)
T TIGR02718 200 SLFRFFRRPLAWSLLALALLSAMTAVSGFGLSKLYLVDAGWPLEW----IGRLGMAGGAVTVLLGCGGGAWLVRRAG 272 (390)
T ss_pred HHHHHHcCcCHHHHHHHHHHHHHHHHHHHHHhhHHHHhcCCCHHH----HHHHHhHHHHHHHHHHHHHHHHHHHHhh
Confidence 467889999887777666666665544444344555554334433 3445555566667778888999999987
No 113
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=69.82 E-value=92 Score=28.70 Aligned_cols=41 Identities=12% Similarity=0.048 Sum_probs=30.5
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHhhcCCCCcchh-HHHHHHHHH
Q 017669 61 SKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAK-ALVLIHRFF 103 (368)
Q Consensus 61 e~Lp~Lf~~t~~~~l~~~ply~~l~~~~r~sr~r-~~~~~~~fF 103 (368)
++.-++.....+..++..++.+++.+ |.+|++ .+.......
T Consensus 211 ~~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~~~~~~ 252 (352)
T cd06174 211 AEAGLLLSLFGLGGILGALLGGLLSD--RLGRRRLLLLIGLLLA 252 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhhhHHHHHHHHHH
Confidence 34455556667888999999999999 999998 665544444
No 114
>PRK11010 ampG muropeptide transporter; Validated
Probab=68.78 E-value=1.5e+02 Score=30.72 Aligned_cols=38 Identities=18% Similarity=0.237 Sum_probs=28.7
Q ss_pred CcCcchhHH-HHHHHHHHHHHHHHHHhhcCCCCcchhHHHH
Q 017669 59 GLSKLPGLF-VGSLILTLIAAPVSTLIFSLPNLSKAKALVL 98 (368)
Q Consensus 59 G~e~Lp~Lf-~~t~~~~l~~~ply~~l~~~~r~sr~r~~~~ 98 (368)
+.++..++. ....+++++..++.|++++ |++|+|.+..
T Consensus 256 s~~~~g~~~~~~g~i~~iiG~ll~G~L~d--r~g~~~~l~i 294 (491)
T PRK11010 256 DAGEVGLVNKTLGLLATIVGALYGGILMQ--RLSLFRALMI 294 (491)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhHHHHHHH
Confidence 445566665 3446788999999999999 9999886543
No 115
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=68.15 E-value=1.5e+02 Score=31.11 Aligned_cols=73 Identities=15% Similarity=0.020 Sum_probs=48.1
Q ss_pred chHhHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 017669 286 AILDGLRLIFSSNYLLSVSLFLWLSAVVSSFFYFQKVTVIAMTVS-SSLGRRRLLAEINSFIAVFILAGQLTLTGTSFL 363 (368)
Q Consensus 286 ~~~~g~~~i~rSpYLl~Ial~v~l~~~vst~lyf~~~~~v~~~~~-d~~~rt~ffa~i~~~v~v~tl~~QlflTgrii~ 363 (368)
+..+..+.+.++|.-....+|+.+.+..-++-|..-.-+-.+.+. +..|=|++-+.+.. -+ ++-+.++|+.+.
T Consensus 196 ~f~~a~~~~~~~~~a~~f~~fl~l~t~a~~~QD~iLEPygg~Vfgmsv~eTT~Lta~~~~----G~-L~G~~~~g~~l~ 269 (403)
T PF03209_consen 196 PFREAWRQVWASPQARRFFVFLFLGTLAFFMQDVILEPYGGEVFGMSVGETTRLTAFWGG----GT-LLGMLLAGFLLS 269 (403)
T ss_pred cHHHHHHHHHhCCChhHHHHHHHHHHHHHHhhHHHcCCchhHHcCCCHHHHHHHHHHHHH----HH-HHHHHHHHHHhc
Confidence 556788999999999999999988877777766666666666664 55555555443322 22 344444566554
No 116
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=67.76 E-value=40 Score=33.21 Aligned_cols=39 Identities=5% Similarity=-0.057 Sum_probs=29.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHH
Q 017669 64 PGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFS 104 (368)
Q Consensus 64 p~Lf~~t~~~~l~~~ply~~l~~~~r~sr~r~~~~~~~fF~ 104 (368)
.++.....+.+++..|+.+++++ |++|++.+.......+
T Consensus 260 ~~~~~~~~i~~ii~~~~~~~l~~--r~g~~~~~~~~~~~~~ 298 (437)
T TIGR00792 260 SYMGSIAIVAGLIGVLLFPRLVK--KFGRKILFAGGILLMV 298 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HhCcHHHHHHHHHHHH
Confidence 34445557888899999999999 9999998766554443
No 117
>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]
Probab=67.44 E-value=1.6e+02 Score=30.97 Aligned_cols=33 Identities=21% Similarity=0.167 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHH
Q 017669 70 SLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFS 104 (368)
Q Consensus 70 t~~~~l~~~ply~~l~~~~r~sr~r~~~~~~~fF~ 104 (368)
....+++.+|+.|.++. |+.|+..+.+...+..
T Consensus 71 ~~~~~~i~s~~iG~lSD--~~grk~~L~~~~~~~~ 103 (463)
T KOG2816|consen 71 AGLLTLISSPLIGALSD--RYGRKVVLLLPLFGTI 103 (463)
T ss_pred hHHHHHHHHhhhHHhhh--hhhhhhhHHHHHHHHH
Confidence 45789999999999999 9999999877765553
No 118
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=65.14 E-value=37 Score=34.87 Aligned_cols=28 Identities=11% Similarity=0.156 Sum_probs=21.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhcCCCCcch
Q 017669 64 PGLFVGSLILTLIAAPVSTLIFSLPNLSKA 93 (368)
Q Consensus 64 p~Lf~~t~~~~l~~~ply~~l~~~~r~sr~ 93 (368)
-.+.....++..+..++.||++. |+.||
T Consensus 291 ~~~~~~~~~~~~ig~~~~G~lsD--r~~~r 318 (476)
T PLN00028 291 GAIAASFGLMNLFARPAGGYLSD--VAARR 318 (476)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHH--HHHHh
Confidence 34445555778889999999999 98765
No 119
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=65.01 E-value=1.3e+02 Score=28.64 Aligned_cols=46 Identities=17% Similarity=0.165 Sum_probs=33.6
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHHHHH
Q 017669 61 SKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVSLL 108 (368)
Q Consensus 61 e~Lp~Lf~~t~~~~l~~~ply~~l~~~~r~sr~r~~~~~~~fF~~~LL 108 (368)
++.-++.....+.+++..++.+++.+ |++|++.+........+..+
T Consensus 242 ~~~g~~~~~~~~~~~~~~~~~g~l~~--~~~~~~~~~~~~~~~~~~~~ 287 (385)
T TIGR00710 242 SVFGLLFALNIIAMIFGGFLNGRFIK--KWGAKSLLRMGLILFAVSAV 287 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--hcCHHHHHHHHHHHHHHHHH
Confidence 34455556666788999999999999 99999988766555544433
No 120
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=64.57 E-value=33 Score=35.84 Aligned_cols=75 Identities=9% Similarity=0.026 Sum_probs=52.6
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhh-----hhhhhhccCcCcchhHHHHHHHHHHHHHHHHHHhhcCCC-CcchhHHHHHHH
Q 017669 28 SALLHSSSCFFFILSAYFVVLPL-----RDEGAISLGLSKLPGLFVGSLILTLIAAPVSTLIFSLPN-LSKAKALVLIHR 101 (368)
Q Consensus 28 ~~~l~~~l~fF~il~aYyiLRPv-----RD~l~v~~G~e~Lp~Lf~~t~~~~l~~~ply~~l~~~~r-~sr~r~~~~~~~ 101 (368)
+.+...+..-++=-++||..++. +++++. +.++..|+..+-.....+..|+.||++. | +.|||.+.+...
T Consensus 14 ~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~--~~~~a~~i~~~~~~~~~~~~~~~G~laD--r~~G~r~~~~~g~~ 89 (489)
T PRK10207 14 RPFFMIFFVELWERFGYYGVQGILAVFFVKQLGF--SQEQAFITFGAFAALVYGLISIGGYVGD--HLLGTKRTIVLGAI 89 (489)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHHHhhHHHhhh--hccchHHHHHHHHH
Confidence 44555556666777888887763 444433 3444566666666677777889999999 9 999999888777
Q ss_pred HHHHH
Q 017669 102 FFSVS 106 (368)
Q Consensus 102 fF~~~ 106 (368)
.|++.
T Consensus 90 ~~~~g 94 (489)
T PRK10207 90 VLAIG 94 (489)
T ss_pred HHHHH
Confidence 77554
No 121
>PRK10429 melibiose:sodium symporter; Provisional
Probab=64.47 E-value=46 Score=34.08 Aligned_cols=35 Identities=11% Similarity=-0.057 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHH
Q 017669 68 VGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFS 104 (368)
Q Consensus 68 ~~t~~~~l~~~ply~~l~~~~r~sr~r~~~~~~~fF~ 104 (368)
....+.+++..|+.+++.+ |++|++.+.+.....+
T Consensus 273 ~~~~i~~ii~~~~~~~l~~--r~gkk~~~~~~~~~~~ 307 (473)
T PRK10429 273 SYAGAANLVTLILFPRLVK--SLSRRILWAGASIFPV 307 (473)
T ss_pred HHHHHHHHHHHHHHHHHHH--HcCcHHHHHHHHHHHH
Confidence 4444778889999999999 9999999865554443
No 122
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=64.21 E-value=1.9e+02 Score=30.18 Aligned_cols=72 Identities=13% Similarity=0.064 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhhh-----hhhhhhccCcCcchhHHHHHHHHHHHHHHHHHHhhcCCC-CcchhHHHHHHHH
Q 017669 29 ALLHSSSCFFFILSAYFVVLPL-----RDEGAISLGLSKLPGLFVGSLILTLIAAPVSTLIFSLPN-LSKAKALVLIHRF 102 (368)
Q Consensus 29 ~~l~~~l~fF~il~aYyiLRPv-----RD~l~v~~G~e~Lp~Lf~~t~~~~l~~~ply~~l~~~~r-~sr~r~~~~~~~f 102 (368)
.+..++..-+|--++||...+. .++++.+ .++-.++.......+....++.||++. | ++||+.+.+....
T Consensus 22 ~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s--~~~a~~~~~~~~~~~~~~~~~~G~LaD--r~~G~r~~~~~g~~~ 97 (500)
T PRK09584 22 AFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMS--EADSITLFSSFSALVYGLVAIGGWLGD--KVLGTKRVIMLGAIV 97 (500)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHH--hccchHHHHHHHHHH
Confidence 4566777778888888888774 3443331 122234444433445555679999999 9 5999987666555
Q ss_pred HH
Q 017669 103 FS 104 (368)
Q Consensus 103 F~ 104 (368)
++
T Consensus 98 ~~ 99 (500)
T PRK09584 98 LA 99 (500)
T ss_pred HH
Confidence 53
No 123
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=63.78 E-value=1.8e+02 Score=29.83 Aligned_cols=41 Identities=12% Similarity=0.212 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHH
Q 017669 67 FVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVSLLV 109 (368)
Q Consensus 67 f~~t~~~~l~~~ply~~l~~~~r~sr~r~~~~~~~fF~~~LL~ 109 (368)
+...++...+..+++|++.. |+.||+.+.+....+++..++
T Consensus 63 ~~~~~l~~~ig~~~~G~l~D--r~Grr~~l~~~~~l~~i~~~~ 103 (490)
T PRK10642 63 FSVPFLIRPLGGLFFGMLGD--KYGRQKILAITIVIMSISTFC 103 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHH--hcccHHHHHHHHHHHHHHHHH
Confidence 45566788899999999999 999999998888887554443
No 124
>PRK03633 putative MFS family transporter protein; Provisional
Probab=63.75 E-value=1.5e+02 Score=28.92 Aligned_cols=40 Identities=3% Similarity=-0.144 Sum_probs=29.5
Q ss_pred cchhHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHH
Q 017669 62 KLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFF 103 (368)
Q Consensus 62 ~Lp~Lf~~t~~~~l~~~ply~~l~~~~r~sr~r~~~~~~~fF 103 (368)
...++.....++.++...+-+++.+ |++|++++.......
T Consensus 236 ~~g~~~~~~~~~~~~~~~~~g~l~d--r~~~~~~l~~~~~~~ 275 (381)
T PRK03633 236 SIGFWMALLVSAGILGQWPIGRLAD--RFGRLLVLRVQVFVV 275 (381)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHH--HcCcHHHHHHHHHHH
Confidence 3445555556777888899999999 999998876554443
No 125
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=63.67 E-value=2.6e+02 Score=31.66 Aligned_cols=40 Identities=13% Similarity=-0.062 Sum_probs=30.0
Q ss_pred cchhHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHH
Q 017669 62 KLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFF 103 (368)
Q Consensus 62 ~Lp~Lf~~t~~~~l~~~ply~~l~~~~r~sr~r~~~~~~~fF 103 (368)
..-++.....+++++..++.+++.+ |.++++++.+....+
T Consensus 270 ~~g~~~~~~~ig~~~g~~~~g~l~~--r~~~~~~~~~~~~~~ 309 (1146)
T PRK08633 270 QVQYLLAASAIGIGIGSLLAGRLSG--RHIELGLVPLGALGL 309 (1146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC--CceEccchhHHHHHH
Confidence 3456666677888899999999999 999888766544433
No 126
>PRK15075 citrate-proton symporter; Provisional
Probab=61.92 E-value=1.8e+02 Score=29.15 Aligned_cols=85 Identities=13% Similarity=0.143 Sum_probs=45.6
Q ss_pred hccCCCchhHHH--HHHHHHHHHHHHHhhhhhhhhhhhhccCcCc--chhHH------HHHHHHHHHHHHHHHHhhcCCC
Q 017669 20 VTLHPHETSALL--HSSSCFFFILSAYFVVLPLRDEGAISLGLSK--LPGLF------VGSLILTLIAAPVSTLIFSLPN 89 (368)
Q Consensus 20 ~~i~~~E~~~~l--~~~l~fF~il~aYyiLRPvRD~l~v~~G~e~--Lp~Lf------~~t~~~~l~~~ply~~l~~~~r 89 (368)
-|-..+|-|+.. ..++..|+-.....++-+.-..+.-+.|.++ ..++. ..+++...+..++.|++.+ |
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~D--r 82 (434)
T PRK15075 5 TPAASRESKARAILRVTSGNFLEMFDFFLFGFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYID--R 82 (434)
T ss_pred CCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhh--h
Confidence 345556776653 3333334444333444444444444433333 22322 1122222345788899999 9
Q ss_pred CcchhHHHHHHHHHHHH
Q 017669 90 LSKAKALVLIHRFFSVS 106 (368)
Q Consensus 90 ~sr~r~~~~~~~fF~~~ 106 (368)
+.|||.+......+++.
T Consensus 83 ~Grr~~l~~~~~~~~~~ 99 (434)
T PRK15075 83 VGRRKGLIVTLSIMASG 99 (434)
T ss_pred hchHHHHHHHHHHHHHH
Confidence 99999987776665433
No 127
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=59.57 E-value=1.9e+02 Score=28.85 Aligned_cols=39 Identities=10% Similarity=0.206 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHHH
Q 017669 66 LFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVS 106 (368)
Q Consensus 66 Lf~~t~~~~l~~~ply~~l~~~~r~sr~r~~~~~~~fF~~~ 106 (368)
.+..++....+..+++|++.. |+.|||.+......+++.
T Consensus 68 ~~~~~~~~~~ig~~~~G~l~D--r~Grr~~l~~~~~~~~~~ 106 (432)
T PRK10406 68 VFAAGFLMRPIGGWLFGRIAD--KHGRKKSMLISVCMMCFG 106 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--hcCcHHHHHHHHHHHHHH
Confidence 345556677788999999999 999999988877766443
No 128
>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function.
Probab=59.23 E-value=2.2e+02 Score=29.31 Aligned_cols=45 Identities=18% Similarity=0.131 Sum_probs=37.0
Q ss_pred CcccchHhHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017669 282 PHLWAILDGLRLIFSSNYLLSVSLFLWLSAVVSSFFYFQKVTVIA 326 (368)
Q Consensus 282 ~~~~~~~~g~~~i~rSpYLl~Ial~v~l~~~vst~lyf~~~~~v~ 326 (368)
+.+++..++.+.|.++|-.+.+++.=-++-...-++-|.|.-.++
T Consensus 228 ~~~~~~~~a~~~i~~d~ril~LG~~qslFE~smy~FVflWtPaL~ 272 (354)
T PF05631_consen 228 SLSGSFREAWRAILSDPRILLLGLIQSLFEGSMYLFVFLWTPALD 272 (354)
T ss_pred chHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHheeeeeceec
Confidence 445577889999999999998888888888888888888887777
No 129
>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]
Probab=58.83 E-value=1.2e+02 Score=31.25 Aligned_cols=52 Identities=15% Similarity=0.073 Sum_probs=36.7
Q ss_pred HHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 017669 290 GLRLIFSSNYLLSVSLFLWLSAVVSSFFYFQKVTVIAMTVSSSLGRRRLLAE 341 (368)
Q Consensus 290 g~~~i~rSpYLl~Ial~v~l~~~vst~lyf~~~~~v~~~~~d~~~rt~ffa~ 341 (368)
.+..+++.|.+..-.+++.+-....++.|+.-...+.....|.---..+++.
T Consensus 310 ~~~~l~~~~~l~~~~~~~~~~~~~~~~~y~gl~~~~~~lg~~~~~~~~~~~~ 361 (521)
T KOG0255|consen 310 SFLDLFRTPRLRYRTLYLLFIWFVFSLVYYGLSLNVSGLGGNIYLNFTLSGL 361 (521)
T ss_pred chhhhhcCHHHHHHHHHHHHHHHHHhHHHHhhhhhhhhcCchHHHHHHHHHH
Confidence 4788899997777777777777888888888777777654444444444443
No 130
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=58.72 E-value=1.8e+02 Score=28.16 Aligned_cols=30 Identities=20% Similarity=0.222 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHhhcCCCCcchhHHHHHHHH
Q 017669 71 LILTLIAAPVSTLIFSLPNLSKAKALVLIHRF 102 (368)
Q Consensus 71 ~~~~l~~~ply~~l~~~~r~sr~r~~~~~~~f 102 (368)
.+.+++..|..+++.+ |++|++.+......
T Consensus 268 ~l~~~~~~~~~g~l~d--r~g~~~~~~~~~~~ 297 (408)
T PRK09874 268 GVAALLSAPRLGKLGD--RIGPEKILITALIF 297 (408)
T ss_pred HHHHHHHHHHHHHHHh--ccccchhHHHHHHH
Confidence 3566788899999999 99999987655443
No 131
>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]
Probab=58.44 E-value=17 Score=38.73 Aligned_cols=76 Identities=7% Similarity=0.042 Sum_probs=41.2
Q ss_pred cchHhHHHHHhh-chhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 017669 285 WAILDGLRLIFS-SNYLLSVSLFLWLSAVVSSFFYFQKVTVIA--MTVSSSLGRRRLLAEINSFIAVFILAGQLTLTGT 360 (368)
Q Consensus 285 ~~~~~g~~~i~r-SpYLl~Ial~v~l~~~vst~lyf~~~~~v~--~~~~d~~~rt~ffa~i~~~v~v~tl~~QlflTgr 360 (368)
.+.++-++...+ .-|-+....++..--++.++=+-.-+..-. +......+.+..|+-++...+++..+..=.+.-+
T Consensus 231 ts~~kDl~~l~~~~v~v~~sl~~~a~~fv~Gs~sww~p~~~~~~~~~~~~~~~~~~ifg~vt~~~G~lGvl~Ggiisd~ 309 (493)
T KOG1330|consen 231 TSVWKDLKVLAKIKVFVLSSLGIIAAQFVIGSLSWWAPAFIYYSYELIGFDHNATLIFGGVTCAGGSLGVLFGGIISDK 309 (493)
T ss_pred cchHHHHHHHHccCceeeehHHHHHHHHhccccchhhhhHHHHHHHHhCCccccchhhhhHHHhhchhhheehHHHHHH
Confidence 355666677777 555555555555555666643332222111 1112455677888888877777765544433333
No 132
>TIGR00893 2A0114 d-galactonate transporter.
Probab=58.15 E-value=1.6e+02 Score=27.47 Aligned_cols=32 Identities=9% Similarity=-0.108 Sum_probs=25.2
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHhhcCCCCcchh
Q 017669 61 SKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAK 94 (368)
Q Consensus 61 e~Lp~Lf~~t~~~~l~~~ply~~l~~~~r~sr~r 94 (368)
++.-++.....+..++..++.+++.+ |+.||+
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~~~~ 282 (399)
T TIGR00893 251 LEAGFMASLPGIVGFIGMILGGRLSD--LLLRRG 282 (399)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHH--HHhhcc
Confidence 34455556666778899999999999 999986
No 133
>PRK12382 putative transporter; Provisional
Probab=57.91 E-value=1.9e+02 Score=28.16 Aligned_cols=36 Identities=6% Similarity=-0.116 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHH
Q 017669 68 VGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSV 105 (368)
Q Consensus 68 ~~t~~~~l~~~ply~~l~~~~r~sr~r~~~~~~~fF~~ 105 (368)
.......++..++.+++.+ |++|+|.+.......++
T Consensus 256 ~~~~~~~~~~~~~~g~l~~--r~g~~~~~~~~~~~~~~ 291 (392)
T PRK12382 256 TAFGGAFVLMRVLFGWMPD--RFGGVKVAIVSLLVETV 291 (392)
T ss_pred HHHHHHHHHHHHHHHHHHH--hcCCCeehHHHHHHHHH
Confidence 3344556778899999999 99999887665554433
No 134
>PTZ00207 hypothetical protein; Provisional
Probab=56.72 E-value=3e+02 Score=30.10 Aligned_cols=55 Identities=11% Similarity=0.126 Sum_probs=36.2
Q ss_pred hhhhhhhhhhccCcCcchhHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHHH
Q 017669 47 VLPLRDEGAISLGLSKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVS 106 (368)
Q Consensus 47 LRPvRD~l~v~~G~e~Lp~Lf~~t~~~~l~~~ply~~l~~~~r~sr~r~~~~~~~fF~~~ 106 (368)
..+++++++.+ ..++-++.......+ ...+++|++.. |+++|+++.+....+++.
T Consensus 50 s~~L~~~lgls--~~~l~~i~svg~~~g-~~~lp~G~L~D--r~G~R~vllig~ll~~iG 104 (591)
T PTZ00207 50 SGAMQARYNLT--QRDLSTITTVGIAVG-YFLLPYSFIYD--YLGPRPIFVLSMTVFCLG 104 (591)
T ss_pred HHHHHHHhCcC--HHHHHHHHHHHHHHH-HHHHHHHHHHH--HhCcHHHHHHHHHHHHHH
Confidence 46778877664 234556553322333 45667899999 999999988777666433
No 135
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=56.59 E-value=80 Score=30.19 Aligned_cols=39 Identities=21% Similarity=0.094 Sum_probs=30.4
Q ss_pred cCcchhHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHH
Q 017669 60 LSKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIH 100 (368)
Q Consensus 60 ~e~Lp~Lf~~t~~~~l~~~ply~~l~~~~r~sr~r~~~~~~ 100 (368)
.++..++.....+++++..++.+++.+ |++|++.+....
T Consensus 273 ~~~~~~~~~~~~~~~~~g~~~~g~l~d--r~g~~~~~~~~~ 311 (405)
T TIGR00891 273 PHTVANIVVFSNIGAIVGGCVFGFLGD--WLGRRKAYVCSL 311 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HhCchhhhHHHH
Confidence 345556666667888999999999999 999998765444
No 136
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=55.50 E-value=2.7e+02 Score=31.78 Aligned_cols=67 Identities=7% Similarity=-0.003 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhhh--hhhhhhccCcCcchhHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHH
Q 017669 29 ALLHSSSCFFFILSAYFVVLPL--RDEGAISLGLSKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLI 99 (368)
Q Consensus 29 ~~l~~~l~fF~il~aYyiLRPv--RD~l~v~~G~e~Lp~Lf~~t~~~~l~~~ply~~l~~~~r~sr~r~~~~~ 99 (368)
.....+.+++++...+...-|. +|.+ ..+....-++.....+++++...+.|++.+ +..+++.+...
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~--g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~--~~~~~~~~~~~ 297 (1140)
T PRK06814 229 LAILGISWFWLVGAVVLSQLPLLAKETL--GGDENVATLFLAVFSVGVAVGSFLASKLSE--GRITLLYVPIG 297 (1140)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHc--CCchHHHHHHHHHHHHHHHHHHHHHHHHhC--CceeeeeehHH
Confidence 3333333343344444444444 3332 234444555567777899999999999998 88777765443
No 137
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=52.99 E-value=2.3e+02 Score=27.60 Aligned_cols=42 Identities=2% Similarity=0.040 Sum_probs=30.8
Q ss_pred cchhHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHH
Q 017669 62 KLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSV 105 (368)
Q Consensus 62 ~Lp~Lf~~t~~~~l~~~ply~~l~~~~r~sr~r~~~~~~~fF~~ 105 (368)
+.-.+.......+++..++.+++.+ |++||+........+.+
T Consensus 240 ~~~~~~~~~~~~~i~~~~~~~~l~~--r~g~~~~~~~~~~~~~~ 281 (392)
T PRK10473 240 EYAIIMALTAGVSMTVSFSTPFALG--IFKPRTLMLTSQVLFLA 281 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--hcCHHHHHHHHHHHHHH
Confidence 3444555666778888999999999 99999987665554433
No 138
>PRK15075 citrate-proton symporter; Provisional
Probab=51.51 E-value=2.6e+02 Score=27.92 Aligned_cols=35 Identities=9% Similarity=0.090 Sum_probs=26.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHH
Q 017669 63 LPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLI 99 (368)
Q Consensus 63 Lp~Lf~~t~~~~l~~~ply~~l~~~~r~sr~r~~~~~ 99 (368)
..++.....+..++..++.|+++. |++||+.+...
T Consensus 276 ~~~~~~~~~~~~~~~~~~~g~l~D--r~g~r~~~~~~ 310 (434)
T PRK15075 276 SLLVTLCVGVSNFIWLPIGGALSD--RIGRRPVLIAF 310 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HhcchHHHHHH
Confidence 344444445667888999999999 99999876543
No 139
>PRK11462 putative transporter; Provisional
Probab=51.50 E-value=1.2e+02 Score=31.26 Aligned_cols=67 Identities=7% Similarity=0.008 Sum_probs=47.7
Q ss_pred HHHHhhchh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017669 291 LRLIFSSNY------LLSVSLFLWLSAVVSSFFYFQKVTVIAMTVSSSLGRRRLLAEINSFIAVFILAGQLTL 357 (368)
Q Consensus 291 ~~~i~rSpY------Ll~Ial~v~l~~~vst~lyf~~~~~v~~~~~d~~~rt~ffa~i~~~v~v~tl~~Qlfl 357 (368)
+-.++..|. +.+..+.-.++.+.-|++..-...+..+.-+|++||++..+.-...-++..++.++..
T Consensus 94 ~~llf~~p~~s~~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~ 166 (460)
T PRK11462 94 CVLAYSTPDLSMNGKMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLM 166 (460)
T ss_pred HHHHHhCCCCCcchHHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555553 4555555556788888999999999999999999999998866655555454555443
No 140
>PF12832 MFS_1_like: MFS_1 like family
Probab=50.84 E-value=78 Score=24.88 Aligned_cols=71 Identities=21% Similarity=0.291 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhhccC--cCcchhHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHH
Q 017669 31 LHSSSCFFFILSAYFVVLPLRDEGAISLG--LSKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFF 103 (368)
Q Consensus 31 l~~~l~fF~il~aYyiLRPvRD~l~v~~G--~e~Lp~Lf~~t~~~~l~~~ply~~l~~~~r~sr~r~~~~~~~fF 103 (368)
++.-+.+|+..++.-.+-|-----.-+.| .+++-.+....-...++.+|+.|+++. |..|+|.+...-.++
T Consensus 3 ~~lk~~yf~~f~~~g~~~Pfl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laD--k~~~~~~~l~~~~~~ 75 (77)
T PF12832_consen 3 LPLKAFYFFYFAALGCLYPFLPLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLAD--KFGKRKVILLGSLFM 75 (77)
T ss_pred hHHHHHHHHHHHHHHHHHhhhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHCccHHHHHHHHHH
Confidence 34445566666666666664332222333 344444455556888999999999999 999999986655443
No 141
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=48.38 E-value=2.7e+02 Score=27.15 Aligned_cols=42 Identities=10% Similarity=0.064 Sum_probs=29.0
Q ss_pred CcCcchhHHHHH-HHHHHHHHHHHHHhhcCCCCcchhHHHHHHHH
Q 017669 59 GLSKLPGLFVGS-LILTLIAAPVSTLIFSLPNLSKAKALVLIHRF 102 (368)
Q Consensus 59 G~e~Lp~Lf~~t-~~~~l~~~ply~~l~~~~r~sr~r~~~~~~~f 102 (368)
+.+++-+++... ...+++...+.+++.+ |++++|.+......
T Consensus 241 s~~~ig~~~~~~~~~~~~~g~~~~g~l~~--r~g~~~~l~~~~~~ 283 (390)
T TIGR02718 241 PLEWIGRLGMAGGAVTVLLGCGGGAWLVR--RAGLWRTFILGVGL 283 (390)
T ss_pred CHHHHHHHHhHHHHHHHHHHHHHHHHHHH--HhhHHHHHHHHHHH
Confidence 455566655333 3455666889999999 99999988664433
No 142
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=48.31 E-value=57 Score=32.64 Aligned_cols=45 Identities=18% Similarity=0.187 Sum_probs=37.3
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHHHH
Q 017669 61 SKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVSL 107 (368)
Q Consensus 61 e~Lp~Lf~~t~~~~l~~~ply~~l~~~~r~sr~r~~~~~~~fF~~~L 107 (368)
++..++.+..++...+..++.|++++ |+.|||.+......|++..
T Consensus 55 ~~~~~~~s~~~ig~~~~~~~~G~l~d--r~Grr~~~~~~~~l~~i~~ 99 (479)
T PRK10077 55 SLLGFCVASALIGCIIGGALGGYCSN--RFGRRDSLKIAAVLFFISA 99 (479)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH--HhccHHHHHHHHHHHHHHH
Confidence 35567778888999999999999999 9999999887776665443
No 143
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=47.75 E-value=1.3e+02 Score=33.03 Aligned_cols=62 Identities=11% Similarity=0.107 Sum_probs=44.3
Q ss_pred HHHHHHHhhhhhhhhhhh-h---ccCcCcchhHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHH
Q 017669 38 FFILSAYFVVLPLRDEGA-I---SLGLSKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHR 101 (368)
Q Consensus 38 F~il~aYyiLRPvRD~l~-v---~~G~e~Lp~Lf~~t~~~~l~~~ply~~l~~~~r~sr~r~~~~~~~ 101 (368)
+.+.++|+.+-..-..+. + -+|.++..|+-++-.+...+..|++|+|+. .+.||.++...-.
T Consensus 51 ~~~~~~~~~~~~~a~~l~~I~~diG~~~~~~w~~~~~~l~~av~~~~~G~LSD--lfGRr~~~i~g~~ 116 (599)
T PF06609_consen 51 LAVIAAYFVLVLPASILPYINADIGGSDNWSWFSTAWTLASAVSFPFVGRLSD--LFGRRYFFIIGSL 116 (599)
T ss_pred HHHHHHHHHHhccHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHhhHHHHH--HhcchHHHHHHHH
Confidence 334455666543333222 1 258899999888888999999999999999 9999998654433
No 144
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=47.61 E-value=3.2e+02 Score=29.23 Aligned_cols=76 Identities=17% Similarity=0.189 Sum_probs=55.2
Q ss_pred HHHHHhhhhhhhhhhhhccCcCcc--hhHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHhh
Q 017669 40 ILSAYFVVLPLRDEGAISLGLSKL--PGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVSLLVFFLLWQSS 117 (368)
Q Consensus 40 il~aYyiLRPvRD~l~v~~G~e~L--p~Lf~~t~~~~l~~~ply~~l~~~~r~sr~r~~~~~~~fF~~~LL~F~~l~~~~ 117 (368)
.+++-+.+.=--..+..+.|.+.- +|.-.++-.+.++.+.+-.++.. |++||.++-.....-.+..+++.+.....
T Consensus 282 q~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid--~~gRRpLll~~~~~~~~~~~~~~~~~~l~ 359 (485)
T KOG0569|consen 282 QFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLID--RLGRRPLLLISLSLMAVALLLMSIALFLS 359 (485)
T ss_pred HhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--hcCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344433333333444455566655 77778888999999999999999 99999999888888877777776655554
No 145
>COG5487 Small integral membrane protein [Function unknown]
Probab=46.68 E-value=15 Score=27.66 Aligned_cols=20 Identities=20% Similarity=0.280 Sum_probs=16.9
Q ss_pred eeeehhHHHHHHHHHHHHHHHHH
Q 017669 172 MGFFLWVALLNLITISSTWARVI 194 (368)
Q Consensus 172 ~~FyVWvsVfnL~~iSlFWs~~~ 194 (368)
.+||+-+-+| ++|+||+...
T Consensus 33 IlF~i~~vlf---~vsL~~g~~r 52 (54)
T COG5487 33 ILFFIFLVLF---LVSLFAGLKR 52 (54)
T ss_pred HHHHHHHHHH---HHHHHHHHhh
Confidence 7888888877 9999999863
No 146
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=46.36 E-value=1.8e+02 Score=27.28 Aligned_cols=33 Identities=12% Similarity=0.058 Sum_probs=22.9
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHhhcCCCCcchhH
Q 017669 61 SKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKA 95 (368)
Q Consensus 61 e~Lp~Lf~~t~~~~l~~~ply~~l~~~~r~sr~r~ 95 (368)
++..++.....+.+++..++.+++.+ |..++|.
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~g~l~~--r~~~~~~ 284 (379)
T TIGR00881 252 EKASWAFTLYELGGLVGTLLAGWLSD--KLFNGRR 284 (379)
T ss_pred HHHHHHHHHHHHHcchhHHHHHHHHH--HHcCCcc
Confidence 33445555566778888999999999 8644443
No 147
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=46.14 E-value=1.7e+02 Score=28.10 Aligned_cols=37 Identities=5% Similarity=0.013 Sum_probs=26.7
Q ss_pred cCcchhHHHHHHHHHHHHHHHHHHhhcCCCCc-chhHHHH
Q 017669 60 LSKLPGLFVGSLILTLIAAPVSTLIFSLPNLS-KAKALVL 98 (368)
Q Consensus 60 ~e~Lp~Lf~~t~~~~l~~~ply~~l~~~~r~s-r~r~~~~ 98 (368)
.++...+.....+++++..++.+++.+ |++ |++.+..
T Consensus 231 ~~~~g~~~~~~~~~~i~~~~~~g~l~d--r~~~~~~~~~~ 268 (355)
T TIGR00896 231 AATAGSLLALMQLAQAASALLIPALAR--RVKDQRGIVAV 268 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHh--hhccchHHHHH
Confidence 344555666667889999999999999 994 4544433
No 148
>PRK09848 glucuronide transporter; Provisional
Probab=45.52 E-value=1.2e+02 Score=30.59 Aligned_cols=34 Identities=15% Similarity=0.227 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHHH
Q 017669 71 LILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVS 106 (368)
Q Consensus 71 ~~~~l~~~ply~~l~~~~r~sr~r~~~~~~~fF~~~ 106 (368)
.+..++..|+.+++.+ |+++++.+..-...+++.
T Consensus 274 ~~~~~~~~~l~~~l~~--r~g~~~~~~~g~~~~~i~ 307 (448)
T PRK09848 274 LVGTVASAPLVPGMVA--RIGKKNTFLIGALLGTCG 307 (448)
T ss_pred HHHHHHHHHHHHHHHH--HhCcHHHHHHHHHHHHHH
Confidence 4667788999999999 999999887666555443
No 149
>TIGR00901 2A0125 AmpG-related permease.
Probab=44.10 E-value=1.4e+02 Score=28.61 Aligned_cols=42 Identities=14% Similarity=0.164 Sum_probs=28.3
Q ss_pred cCcchhHHH-HHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHH
Q 017669 60 LSKLPGLFV-GSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFF 103 (368)
Q Consensus 60 ~e~Lp~Lf~-~t~~~~l~~~ply~~l~~~~r~sr~r~~~~~~~fF 103 (368)
.++.-.+.. .....+++..++.+++.+ |++|++.+.......
T Consensus 243 ~~~~g~~~~~~~~~~~~~g~~~~g~l~~--r~g~~~~l~~~~~~~ 285 (356)
T TIGR00901 243 KEEIALVAKINGLLGAILGGLIGGIIMQ--PLNILYALLLFGIVQ 285 (356)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHh--hhhHHHHHHHHHHHH
Confidence 344444443 233567788899999999 999998876555444
No 150
>PRK10983 putative inner membrane protein; Provisional
Probab=43.97 E-value=1.1e+02 Score=31.12 Aligned_cols=51 Identities=18% Similarity=0.228 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhhccCcCcchhHHHHHHHHHHHHHHHHHHhhcCCCCcchhHH
Q 017669 31 LHSSSCFFFILSAYFVVLPLRDEGAISLGLSKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKAL 96 (368)
Q Consensus 31 l~~~l~fF~il~aYyiLRPvRD~l~v~~G~e~Lp~Lf~~t~~~~l~~~ply~~l~~~~r~sr~r~~ 96 (368)
....+...++...+++++|.- +-+.|| .+.+.+..|+|.|+.+ |...+|-.
T Consensus 15 ~~~~l~~~l~~~~~~il~pFl------------~~ll~A-~iLa~a~~Pl~~~L~~--~~~~rr~l 65 (368)
T PRK10983 15 LSVLFIAIMIVACFWVVQPFI------------LGFAWA-GMVVIATWPLLLKLQK--ILWGRRSL 65 (368)
T ss_pred HHHHHHHHHHHHHHHHHHHHH------------HHHHHH-HHHHHHHHHHHHHHHH--HhCCCCcH
Confidence 333334455566788999942 232333 6788899999999999 98644433
No 151
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.
Probab=43.94 E-value=7.6 Score=41.45 Aligned_cols=78 Identities=18% Similarity=0.192 Sum_probs=0.0
Q ss_pred chHhHHHHHhhchhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 017669 286 AILDGLRLIFSSNYLLSVSL-FLWLSAVVSSFFYFQKVTVIAMTVSSSLGRRRLLAEINSFIAVFILAGQLTLTGTSFLL 364 (368)
Q Consensus 286 ~~~~g~~~i~rSpYLl~Ial-~v~l~~~vst~lyf~~~~~v~~~~~d~~~rt~ffa~i~~~v~v~tl~~QlflTgrii~~ 364 (368)
.++..++.++++|=.+++.+ .+.-+..++.+..|. -..++.+|.-++.++.+.. ..+.+...++-.++.|.++||
T Consensus 293 df~~~l~~Ll~Np~f~~~~la~~~~~~~~~G~~tF~-pKylE~QF~~sas~A~~l~---G~v~ip~~~~G~llGG~ivkk 368 (539)
T PF03137_consen 293 DFPKALKRLLTNPVFMCLILAGVFESFIVSGFATFL-PKYLESQFGLSASQASLLT---GIVSIPGAALGILLGGYIVKK 368 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhCCCHHHHHHHH---hhhhcchhheehheEEEEEEE
Confidence 56778889999986665554 445556666777776 5577788866666655553 355566667778889999999
Q ss_pred hcC
Q 017669 365 LGL 367 (368)
Q Consensus 365 ~Gv 367 (368)
+.+
T Consensus 369 ~kl 371 (539)
T PF03137_consen 369 FKL 371 (539)
T ss_dssp ---
T ss_pred ecC
Confidence 853
No 152
>PRK15011 sugar efflux transporter B; Provisional
Probab=43.81 E-value=3.3e+02 Score=26.78 Aligned_cols=44 Identities=18% Similarity=0.202 Sum_probs=27.5
Q ss_pred hhhhhhhccCcCcchhHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHH
Q 017669 50 LRDEGAISLGLSKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALV 97 (368)
Q Consensus 50 vRD~l~v~~G~e~Lp~Lf~~t~~~~l~~~ply~~l~~~~r~sr~r~~~ 97 (368)
++|++++ +.+++-.+.+.......+..|+.+.... |+.|||.+.
T Consensus 42 l~~~~~~--s~~~~g~~~~~~~~~~~~~~~~~~~~~d--r~g~r~~~~ 85 (393)
T PRK15011 42 LTDEVHA--RPAMVGFFFTGSAVIGILVSQFLAGRSD--KRGDRKSLI 85 (393)
T ss_pred HHhhcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHh--cccchhHHH
Confidence 4565554 2344555555555666666777666688 999988643
No 153
>PRK03545 putative arabinose transporter; Provisional
Probab=42.36 E-value=3.3e+02 Score=26.50 Aligned_cols=34 Identities=6% Similarity=-0.222 Sum_probs=25.7
Q ss_pred cCcchhHHHHHHHHHHHHHHHHHHhhcCCCCcchhH
Q 017669 60 LSKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKA 95 (368)
Q Consensus 60 ~e~Lp~Lf~~t~~~~l~~~ply~~l~~~~r~sr~r~ 95 (368)
.++..++.....+..++..++.+++.+ |.+|++.
T Consensus 240 ~~~~~~~~~~~~~~~~~g~~~~g~l~d--r~~~~~~ 273 (390)
T PRK03545 240 ENFATLLLLLFGGAGIIGSVLFSRLGN--RHPSGFL 273 (390)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhh--ccchhHH
Confidence 344556555566788999999999999 9987654
No 154
>PRK03699 putative transporter; Provisional
Probab=41.60 E-value=3.5e+02 Score=26.51 Aligned_cols=68 Identities=10% Similarity=0.166 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHhhh---hh--hhhhhhhccCcCcchhHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHH
Q 017669 30 LLHSSSCFFFILSAYFVV---LP--LRDEGAISLGLSKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHR 101 (368)
Q Consensus 30 ~l~~~l~fF~il~aYyiL---RP--vRD~l~v~~G~e~Lp~Lf~~t~~~~l~~~ply~~l~~~~r~sr~r~~~~~~~ 101 (368)
+....+.+||...+++.. -| ++|..+. +.++..++.....++..+..++.+++++ |++|++.+...+.
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~--s~~~~~~~~~~~~~~~~ig~~~~g~l~d--r~~~~~~l~~~~~ 279 (394)
T PRK03699 207 VLFLAIAALLYILAQLTFISWVPEYAQKKFGM--SLEDAGNLVSNFWMAYMVGMWIFSFIVR--FFDLQRILTVLAG 279 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--ChHHhhHHHHHHHHHHHHHHHHHHHHHH--HhchhhHHHHHHH
Confidence 334444555555555432 22 2343333 2333444444445667888899999999 9999988765443
No 155
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=41.53 E-value=3.2e+02 Score=26.09 Aligned_cols=42 Identities=5% Similarity=0.060 Sum_probs=32.2
Q ss_pred cCcchhHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHH
Q 017669 60 LSKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFF 103 (368)
Q Consensus 60 ~e~Lp~Lf~~t~~~~l~~~ply~~l~~~~r~sr~r~~~~~~~fF 103 (368)
.++.-+++....+++++..++.+++.+ |.+|++.+.......
T Consensus 229 ~~~~g~~~~~~~~~~~~~~~~~g~l~~--r~g~~~~~~~~~~~~ 270 (377)
T PRK11102 229 PQNFGYYFALNIVFLFVMTIINSRFVR--RVGALNMLRFGLWIQ 270 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HhCHHHHHHHHHHHH
Confidence 344556667777888999999999999 999999876555443
No 156
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=40.57 E-value=3.9e+02 Score=26.68 Aligned_cols=41 Identities=2% Similarity=0.099 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHH
Q 017669 68 VGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVSLLVF 110 (368)
Q Consensus 68 ~~t~~~~l~~~ply~~l~~~~r~sr~r~~~~~~~fF~~~LL~F 110 (368)
.......++.+++.+++++ |++||+.+.......++..+++
T Consensus 313 ~~~~~~~~i~~~~~g~l~d--r~g~r~~~i~~~~~~~v~~~~l 353 (479)
T PRK10077 313 IIVGVINLTFTVLAIMTVD--KFGRKPLQIIGALGMAIGMFSL 353 (479)
T ss_pred HHHHHHHHHHHHHHHHHHH--HhcChHHHHHhHHHHHHHHHHH
Confidence 3344567788999999999 9999998866666555544433
No 157
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=40.46 E-value=1.8e+02 Score=28.96 Aligned_cols=36 Identities=6% Similarity=0.054 Sum_probs=27.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHH
Q 017669 63 LPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIH 100 (368)
Q Consensus 63 Lp~Lf~~t~~~~l~~~ply~~l~~~~r~sr~r~~~~~~ 100 (368)
.-++.....+++++..|+.+++.+ |++|++.+....
T Consensus 293 ~g~~~~~~~~~~~~~~~~~g~l~~--r~~~~~~~~~g~ 328 (485)
T TIGR00711 293 AGLHILPVGLAPMLSSPIAGRMGD--KIDPRKLVTIGL 328 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh--hcCcHHHHHHHH
Confidence 334445556778889999999999 999998764433
No 158
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=40.30 E-value=3.8e+02 Score=26.54 Aligned_cols=35 Identities=11% Similarity=-0.052 Sum_probs=25.3
Q ss_pred cchhHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHH
Q 017669 62 KLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVL 98 (368)
Q Consensus 62 ~Lp~Lf~~t~~~~l~~~ply~~l~~~~r~sr~r~~~~ 98 (368)
+.-++.....+.+++.+++.+++.+ |.++++.+..
T Consensus 242 ~~G~~~~~~~~g~i~g~~~~~~l~~--~~~~~~~~~~ 276 (393)
T PRK11195 242 QPAYLQAVVAIGIAVGAGAAARLVT--LETVLRVLPA 276 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc--CCcccchHHH
Confidence 3444445566788888999999998 8777776544
No 159
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=38.79 E-value=5e+02 Score=27.44 Aligned_cols=74 Identities=9% Similarity=0.096 Sum_probs=50.0
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhhhhhh---hccCcCcchhHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHH
Q 017669 28 SALLHSSSCFFFILSAYFVVLPLRDEGA---ISLGLSKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFF 103 (368)
Q Consensus 28 ~~~l~~~l~fF~il~aYyiLRPvRD~l~---v~~G~e~Lp~Lf~~t~~~~l~~~ply~~l~~~~r~sr~r~~~~~~~fF 103 (368)
+.+..+++.|+.-++.+++.-|+--.+. .....+++-++.....+...+...++|++.+ |+..|+++.......
T Consensus 34 r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~D--r~G~R~v~~~~~ll~ 110 (462)
T PRK15034 34 RNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVP--IFGGRRWTVFSTAIL 110 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhCChHHHHHHHHHH
Confidence 5567788888888888888877533332 1223345666555444555566677799999 999999886666554
No 160
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=37.44 E-value=3.9e+02 Score=27.06 Aligned_cols=34 Identities=18% Similarity=0.031 Sum_probs=26.0
Q ss_pred hHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHH
Q 017669 65 GLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIH 100 (368)
Q Consensus 65 ~Lf~~t~~~~l~~~ply~~l~~~~r~sr~r~~~~~~ 100 (368)
++.....+.+++..++.|+++. |+.||+......
T Consensus 298 ~~~~~~~~~~~ig~~~~G~lsD--r~g~r~~~~~~~ 331 (467)
T PRK09556 298 NTFTLFEIGALVGSLLWGWLSD--LANGRRALVACI 331 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHCCCchHHHHH
Confidence 3334455778999999999999 999988765443
No 161
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=36.76 E-value=2.6e+02 Score=27.57 Aligned_cols=39 Identities=13% Similarity=0.002 Sum_probs=29.9
Q ss_pred cCcchhHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHH
Q 017669 60 LSKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIH 100 (368)
Q Consensus 60 ~e~Lp~Lf~~t~~~~l~~~ply~~l~~~~r~sr~r~~~~~~ 100 (368)
.++.-.+.....+++++..++.+++.+ |.+|++.+...+
T Consensus 239 ~~~ag~~~~~~~i~~i~g~~~~g~l~~--r~~~~~~~~~~~ 277 (393)
T PRK09705 239 AQYSGSLLALMTLGQAAGALLMPAMAR--HQDRRKLLMLAL 277 (393)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHh--hccchHHHHHHH
Confidence 344455556666888999999999999 999998775543
No 162
>COG3389 Uncharacterized protein conserved in archaea [Function unknown]
Probab=36.66 E-value=2.4e+02 Score=27.68 Aligned_cols=33 Identities=15% Similarity=0.100 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHHH
Q 017669 72 ILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVS 106 (368)
Q Consensus 72 ~~~l~~~ply~~l~~~~r~sr~r~~~~~~~fF~~~ 106 (368)
.+.+++.-+|..+.- +++|++++..+|..=..+
T Consensus 39 fv~Il~atlfill~I--k~~~kwI~r~i~~v~V~~ 71 (277)
T COG3389 39 FVYILVATLFILLAI--KLGRKWIFRGIYSVAVAS 71 (277)
T ss_pred ehhHHHHHHHHHhhe--eecceeeehhhhHHHHHH
Confidence 345555566677777 777777777766554333
No 163
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=36.29 E-value=1.6e+02 Score=30.46 Aligned_cols=71 Identities=10% Similarity=0.043 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHhhhhhh-----hhhhhhccCcCcchhHHHHHHHHHHHHHHHHHHhhcCCC-CcchhHHHHHHHHHHH
Q 017669 33 SSSCFFFILSAYFVVLPL-----RDEGAISLGLSKLPGLFVGSLILTLIAAPVSTLIFSLPN-LSKAKALVLIHRFFSV 105 (368)
Q Consensus 33 ~~l~fF~il~aYyiLRPv-----RD~l~v~~G~e~Lp~Lf~~t~~~~l~~~ply~~l~~~~r-~sr~r~~~~~~~fF~~ 105 (368)
.+..-++--++||.+.|. +|..+...+..+.-++......+..+..++.|+++. | ++|+|.+.+.....++
T Consensus 15 l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laD--r~~G~~~~l~~~~~~~~~ 91 (475)
T TIGR00924 15 LFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGD--RVWGTKKTMVLGGIVLML 91 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHH--hhcchHHHHHHHHHHHHH
Confidence 334445556677766553 232111112233344445556778889999999999 9 8999988766655543
No 164
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=34.83 E-value=2.4e+02 Score=29.06 Aligned_cols=29 Identities=10% Similarity=0.124 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHhhcCCCCcchhHHHHHH
Q 017669 70 SLILTLIAAPVSTLIFSLPNLSKAKALVLIH 100 (368)
Q Consensus 70 t~~~~l~~~ply~~l~~~~r~sr~r~~~~~~ 100 (368)
..+.+.+..|+.|++.+ |+++++.+..-.
T Consensus 304 ~~~~~~~~~~~~g~l~~--r~g~~~~~~~g~ 332 (495)
T PRK14995 304 VMVASGFSGPIAGILVS--RLGLRLVATGGM 332 (495)
T ss_pred HHHHHHHHHHHHHHHHH--HcCchHHHHHHH
Confidence 35667788899999999 999988764433
No 165
>PF03806 ABG_transport: AbgT putative transporter family; InterPro: IPR004697 The p-aminobenzoyl-glutamate transporter family includes two putative transporters, the AbgT protein of Escherichia coli and MtrF of Neisseria gonorrhoeae. AbgT expression is apparently cryptic in wild type cells, but when present on a high copy number plasmid, or when expressed at higher levels due to mutation, it allows utilization of p-aminobenzoyl-glutamate as a source of p-aminobenzoate for p-aminobenzoate auxotrophs []. p-Aminobenzoate is a constituent of, and a precursor for, the biosynthesis of folic acid. It is not currently known if AbgT is naturally involved in transporting p-aminobenzoyl-glutamate, or if it only becomes involved when under altered regulation. MtrF is an inner membrane protein which, together with the MtrCDE efflux pump, is required for high-level resistance to hydrophobic antimicrobial agents in N. gonorrhoeae []. Its role in this process is not known, but it has been suggested that it may be a component of the efflux pump which is dispensible for basal activity, but required for high-level activity [].
Probab=34.74 E-value=2.3e+02 Score=30.49 Aligned_cols=144 Identities=19% Similarity=0.289 Sum_probs=78.0
Q ss_pred ccCCCchhHHHHHHHHHH--HHHHHHhhhh---hhhhhhhhccCcCcchhHH---HHHHHHHHHHHHHHHHhhcCCCCcc
Q 017669 21 TLHPHETSALLHSSSCFF--FILSAYFVVL---PLRDEGAISLGLSKLPGLF---VGSLILTLIAAPVSTLIFSLPNLSK 92 (368)
Q Consensus 21 ~i~~~E~~~~l~~~l~fF--~il~aYyiLR---PvRD~l~v~~G~e~Lp~Lf---~~t~~~~l~~~ply~~l~~~~r~sr 92 (368)
++.+.|-|.+-++.+.+. +.......+- |+||+- +++..+=|++. ...++.-++....||..+. ++++
T Consensus 248 ~Lt~~EkkgLr~Agi~~l~~lall~ll~iP~~a~LR~~~--tG~l~~SPf~~gIIpiI~l~F~i~GivYG~~sG--~iks 323 (502)
T PF03806_consen 248 SLTPREKKGLRWAGIALLAFLALLLLLLIPENAPLRSPE--TGSLFPSPFMKGIIPIIFLFFLIPGIVYGIASG--TIKS 323 (502)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHccCCccccCCC--CCcccCChHHHhHHHHHHHHHHHHHHHHhhhhc--eecC
Confidence 467778777755443222 2222333322 677722 22333445555 2333455566789999999 8887
Q ss_pred hhHH-------------HHHHHHHHHHHHHHHHHHHhhhcccccchhhhhhhchhhccccCCCCCcchhcccCCCCCCcc
Q 017669 93 AKAL-------------VLIHRFFSVSLLVFFLLWQSSSIGYLSKLESVSHLESLDAVSSNAKEDPKAAVDQGSTANSAD 159 (368)
Q Consensus 93 ~r~~-------------~~~~~fF~~~LL~F~~l~~~~~~~y~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 159 (368)
.+=+ +++..||+..++.+ |..+ +++.+---+.+|.|.+-.-.. .
T Consensus 324 ~~Dv~~~M~~~m~~m~~yiVL~F~aaQFia~---F~~S------nlg~i~Av~GA~~L~~~~~~~--------------~ 380 (502)
T PF03806_consen 324 DKDVVKMMSKGMKSMAPYIVLAFFAAQFIAY---FNWS------NLGTILAVKGAEFLKSLGLPG--------------I 380 (502)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH---Hhhc------chHHHHHHHHHHHHHhcCCCc--------------H
Confidence 5432 23333333322222 2222 334444445666655432221 2
Q ss_pred cccccccccccceeeehhHHHHHHHHHH--HHHHHHHHhhChh
Q 017669 160 WGDHGWFYVSVRMGFFLWVALLNLITIS--STWARVIDVMDSE 200 (368)
Q Consensus 160 w~~r~W~y~~v~~~FyVWvsVfnL~~iS--lFWs~~~dvf~~~ 200 (368)
+.. ..|-+-.++.|||..| -=|+.++-||=+=
T Consensus 381 ~l~---------i~fill~a~iNLfi~S~SaKWailAPifVPM 414 (502)
T PF03806_consen 381 PLI---------IGFILLTAFINLFIGSASAKWAILAPIFVPM 414 (502)
T ss_pred HHH---------HHHHHHHHHHHHhhhcchhhHHHHHhHHHHH
Confidence 322 4676789999999988 7798888877554
No 166
>PRK11043 putative transporter; Provisional
Probab=32.93 E-value=4.7e+02 Score=25.45 Aligned_cols=46 Identities=15% Similarity=0.175 Sum_probs=30.0
Q ss_pred cchhHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHH
Q 017669 62 KLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVSLLV 109 (368)
Q Consensus 62 ~Lp~Lf~~t~~~~l~~~ply~~l~~~~r~sr~r~~~~~~~fF~~~LL~ 109 (368)
+....+....++.++...+.+++.+ |+++++........+++..+.
T Consensus 239 ~~g~~~~~~~~~~~~g~~~~~~l~~--r~~~~~~~~~~~~~~~~~~~~ 284 (401)
T PRK11043 239 DIGLSYVPQTIAFLVGGYGCRAALQ--KWGGEQLLPWLLVLFAVSVIA 284 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HcCHHHHHHHHHHHHHHHHHH
Confidence 3444444444566777778899999 999988776555555444443
No 167
>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]
Probab=31.88 E-value=6.7e+02 Score=26.91 Aligned_cols=39 Identities=21% Similarity=0.205 Sum_probs=32.7
Q ss_pred cchhHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHH
Q 017669 62 KLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRF 102 (368)
Q Consensus 62 ~Lp~Lf~~t~~~~l~~~ply~~l~~~~r~sr~r~~~~~~~f 102 (368)
+.|.+....+..|++-+...|.+.+ +..||+-+..+..+
T Consensus 114 q~~llt~~v~~gmllga~~w~l~~d--~~grr~~f~~T~l~ 152 (528)
T KOG0253|consen 114 QAPLLTLSVFLGMLVGAMVWGLSAD--TIGRRKGFNLTFLV 152 (528)
T ss_pred hhhHHHHHHHhhhhhhhhhhheehh--hhhcchhhhhhHHH
Confidence 4677788889999999999999999 99999987665433
No 168
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=30.45 E-value=6.4e+02 Score=26.25 Aligned_cols=76 Identities=16% Similarity=0.228 Sum_probs=52.5
Q ss_pred HHHHHHHHHHH----HHHhhhhhhhhhhhhccCcCcchhHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHHH
Q 017669 31 LHSSSCFFFIL----SAYFVVLPLRDEGAISLGLSKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVS 106 (368)
Q Consensus 31 l~~~l~fF~il----~aYyiLRPvRD~l~v~~G~e~Lp~Lf~~t~~~~l~~~ply~~l~~~~r~sr~r~~~~~~~fF~~~ 106 (368)
....+.-++.+ ..|.-++|.=++..= ...+.++|.-.+--+.+++-+.+.|++.+ | +.++.+.......++.
T Consensus 214 ~~~l~~t~l~~~g~F~~ftYi~P~L~~v~g-~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~d--r-~~~~~l~~~~~l~a~~ 289 (394)
T COG2814 214 LLGLLATFLFMTGHFALYTYIRPFLESVAG-FSVSAVSLVLLAFGIAGFIGNLLGGRLAD--R-GPRRALIAALLLLALA 289 (394)
T ss_pred HHHHHHHHHHHcchhhhHHhHHHHHHHccC-CCHhHHHHHHHHHHHHHHHHHHHHhhhcc--c-cchhHHHHHHHHHHHH
Confidence 34444444444 456667776554321 15667899887777899999999999999 9 7777777777777666
Q ss_pred HHHH
Q 017669 107 LLVF 110 (368)
Q Consensus 107 LL~F 110 (368)
++.|
T Consensus 290 ~l~l 293 (394)
T COG2814 290 LLAL 293 (394)
T ss_pred HHHH
Confidence 6553
No 169
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=30.42 E-value=2.2e+02 Score=27.04 Aligned_cols=36 Identities=19% Similarity=0.126 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHH
Q 017669 66 LFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFF 103 (368)
Q Consensus 66 Lf~~t~~~~l~~~ply~~l~~~~r~sr~r~~~~~~~fF 103 (368)
+........++..++.+++++ |++|++.....+...
T Consensus 266 ~~~~~~~~~~~~~~~~g~l~~--r~g~~~~~~~~~~~~ 301 (366)
T TIGR00886 266 YASLGGLLGSLARPLGGAISD--RLGGARKLLMSFLGV 301 (366)
T ss_pred HHHHHHHHHHHHhhccchHHH--hhccchhHHHHHHHH
Confidence 334445667788899999999 999988776665444
No 170
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=28.17 E-value=3.6e+02 Score=26.36 Aligned_cols=42 Identities=19% Similarity=0.121 Sum_probs=31.8
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHH
Q 017669 61 SKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFS 104 (368)
Q Consensus 61 e~Lp~Lf~~t~~~~l~~~ply~~l~~~~r~sr~r~~~~~~~fF~ 104 (368)
+..-.++.......++..++.+++.+ |++.++.+.+....++
T Consensus 240 ~~~g~l~~~~~~~~i~~~~~~~~l~~--r~g~~~~l~~~~~~~~ 281 (382)
T TIGR00902 240 SATGLLWGIGVLAEIIIFAFSNKLFQ--NCSARDLLLISAIACV 281 (382)
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHh--hCCHHHHHHHHHHHHH
Confidence 34556666667777788888999999 9999998876665553
No 171
>PRK11663 regulatory protein UhpC; Provisional
Probab=28.01 E-value=6.2e+02 Score=25.30 Aligned_cols=21 Identities=19% Similarity=-0.084 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCC
Q 017669 68 VGSLILTLIAAPVSTLIFSLPNL 90 (368)
Q Consensus 68 ~~t~~~~l~~~ply~~l~~~~r~ 90 (368)
....+.+++..++.|++++ |+
T Consensus 286 ~~~~~~~~~g~~~~g~l~d--r~ 306 (434)
T PRK11663 286 SMFELGGFIGALVAGWGSD--KL 306 (434)
T ss_pred HHHHHHHHHHHHHHhhhHH--Hh
Confidence 4444677888999999999 98
No 172
>PF05360 YiaAB: yiaA/B two helix domain; InterPro: IPR008024 This domain consists of two transmembrane helices and a conserved linking section.
Probab=27.23 E-value=83 Score=23.37 Aligned_cols=35 Identities=14% Similarity=0.151 Sum_probs=30.4
Q ss_pred hhhccCCCchhHHHHHHHHHHHHHHHHhhhhhhhh
Q 017669 18 VFVTLHPHETSALLHSSSCFFFILSAYFVVLPLRD 52 (368)
Q Consensus 18 ~~~~i~~~E~~~~l~~~l~fF~il~aYyiLRPvRD 52 (368)
-+|+....-..|-.....+.|++.++..+-|.+||
T Consensus 19 Gl~~~~~~l~~KGy~~~~~l~~l~s~~tl~K~vRD 53 (53)
T PF05360_consen 19 GLWNAPLDLSEKGYYAMGLLFLLFSAFTLQKTVRD 53 (53)
T ss_pred HHHhCCCCHHHHHHHHHHHHHHHHHHHhhhhhcCC
Confidence 35777777778888899999999999999999998
No 173
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=27.05 E-value=7e+02 Score=25.55 Aligned_cols=26 Identities=8% Similarity=0.010 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHhhcCCCCcchhHHHHHH
Q 017669 73 LTLIAAPVSTLIFSLPNLSKAKALVLIH 100 (368)
Q Consensus 73 ~~l~~~ply~~l~~~~r~sr~r~~~~~~ 100 (368)
+.++...+.+++++ |++||+.+....
T Consensus 347 ~~i~g~~~~~~l~d--r~gRR~~l~~~~ 372 (502)
T TIGR00887 347 GTVPGYWVTVFLVD--IIGRKPIQLMGF 372 (502)
T ss_pred HHHHHHHHHHHHhh--hhcchhHHHHHH
Confidence 44556677899999 999998865433
No 174
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=26.58 E-value=6.1e+02 Score=24.75 Aligned_cols=42 Identities=10% Similarity=-0.141 Sum_probs=29.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHHHH
Q 017669 64 PGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVSL 107 (368)
Q Consensus 64 p~Lf~~t~~~~l~~~ply~~l~~~~r~sr~r~~~~~~~fF~~~L 107 (368)
-++.......+++..++.+++.+ |+++++.+......+++.+
T Consensus 254 g~~~~~~~~~~~~g~~~~g~l~~--r~~~~~~~~~~~~~~~~g~ 295 (406)
T PRK15402 254 GLLQVPVFGALIAGNLTLARLTS--RRPLRSLIRMGLWPMVAGL 295 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--hcCHHHHHHHHHHHHHHHH
Confidence 34444455677888999999999 9999998766554443333
No 175
>COG3114 CcmD Heme exporter protein D [Intracellular trafficking and secretion]
Probab=26.32 E-value=29 Score=27.35 Aligned_cols=10 Identities=30% Similarity=1.112 Sum_probs=8.7
Q ss_pred ceeeehhHHH
Q 017669 171 RMGFFLWVAL 180 (368)
Q Consensus 171 ~~~FyVWvsV 180 (368)
+++||||.++
T Consensus 14 gyafyVWlA~ 23 (67)
T COG3114 14 GYAFYVWLAV 23 (67)
T ss_pred CchHHHHHHH
Confidence 3799999988
No 176
>PF13150 DUF3989: Protein of unknown function (DUF3989)
Probab=26.17 E-value=1.1e+02 Score=25.05 Aligned_cols=44 Identities=20% Similarity=0.279 Sum_probs=33.9
Q ss_pred hhhhHHHhhhhc-cCCCchhHHHHHHHHHHHHHHHHhhhhhhhhh
Q 017669 10 SRLDAFASVFVT-LHPHETSALLHSSSCFFFILSAYFVVLPLRDE 53 (368)
Q Consensus 10 ~~~~~~~~~~~~-i~~~E~~~~l~~~l~fF~il~aYyiLRPvRD~ 53 (368)
.|.+..++..++ +-|++-..++..++.+|-++|.|.+.+.+-|-
T Consensus 9 ~~~~~~Lr~~c~~Lsp~~R~~vvl~ml~~fa~l~ly~~~~ai~~~ 53 (85)
T PF13150_consen 9 DRADDRLRRYCGRLSPKQRLRVVLVMLVLFAALCLYMTVSAIYDI 53 (85)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356667776665 45555567888899999999999999998764
No 177
>PRK10091 MFS transport protein AraJ; Provisional
Probab=24.15 E-value=6.7e+02 Score=24.39 Aligned_cols=44 Identities=5% Similarity=-0.022 Sum_probs=33.1
Q ss_pred cCcchhHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHH
Q 017669 60 LSKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSV 105 (368)
Q Consensus 60 ~e~Lp~Lf~~t~~~~l~~~ply~~l~~~~r~sr~r~~~~~~~fF~~ 105 (368)
.++..++.....+++++..++.+++.+ |+++++.....+...++
T Consensus 234 ~~~~~~~~~~~~~~~~ig~~~~g~l~~--r~~~~~~~~~~~~~~~i 277 (382)
T PRK10091 234 ETSMTFIMMLVGLGMVLGNLLSGRLSG--RYSPLRIAAVTDFIIVL 277 (382)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHheecc--ccCchhHHHHHHHHHHH
Confidence 345555556667888999999999999 99999888766554433
No 178
>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=23.85 E-value=9e+02 Score=25.78 Aligned_cols=70 Identities=23% Similarity=0.259 Sum_probs=46.8
Q ss_pred HHHhhhhhhhhhhhhccCcCcchhHHHHHH--HHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHhh
Q 017669 42 SAYFVVLPLRDEGAISLGLSKLPGLFVGSL--ILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVSLLVFFLLWQSS 117 (368)
Q Consensus 42 ~aYyiLRPvRD~l~v~~G~e~Lp~Lf~~t~--~~~l~~~ply~~l~~~~r~sr~r~~~~~~~fF~~~LL~F~~l~~~~ 117 (368)
..|.++|+--.+.+..-|+...---|.|+. ++=.+.+|+-|.++. |+.||-++-....--++ ++.+|+..
T Consensus 47 ~~~~~V~~F~~a~~~~~~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD--~yGRkpvll~c~~~va~----s~ll~~~S 118 (451)
T KOG2615|consen 47 FVVFMVRDFNIAIGEPDGASVFYAGFLGSSFSILQFISSPLWGCLSD--RYGRKPVLLACLIGVAL----SYLLWALS 118 (451)
T ss_pred HHHHhhHHHHHhhCCcccccchhhhhHhhHHHHHHHHhhhhhhhhhh--hhCchHHHHHHHHHHHH----HHHHHHHH
Confidence 456777777666665555333434455555 556789999999999 99999988666554433 55555544
No 179
>COG0628 yhhT Predicted permease, member of the PurR regulon [General function prediction only]
Probab=22.57 E-value=5.6e+02 Score=25.43 Aligned_cols=62 Identities=11% Similarity=0.258 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhccCcCcchhHHHHHHHHHHHHHHHHHHhhcCCC-CcchhHHHHHHHHHHHHHHHH
Q 017669 34 SSCFFFILSAYFVVLPLRDEGAISLGLSKLPGLFVGSLILTLIAAPVSTLIFSLPN-LSKAKALVLIHRFFSVSLLVF 110 (368)
Q Consensus 34 ~l~fF~il~aYyiLRPvRD~l~v~~G~e~Lp~Lf~~t~~~~l~~~ply~~l~~~~r-~sr~r~~~~~~~fF~~~LL~F 110 (368)
.+....+....+.++|+=..+ ....+.+.++.|++.|+.+ | .+|...+..++..+.+-+..+
T Consensus 20 ~~~~~~~~~~~~~~~~~~~p~-------------~~A~vla~l~~p~~~~L~k--~~~~r~~a~~~~~ll~~~ii~~~ 82 (355)
T COG0628 20 LLLLLLLLAILYFFQPILLPL-------------LLALVLAYLLNPLVRRLEK--RGIPRLLAVLLVLLLILLLIVLL 82 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHH--cCCChHHHHHHHHHHHHHHHHHH
Confidence 333344444555666654433 3347889999999999999 7 566666666666554443333
No 180
>PF14150 YesK: YesK-like protein
Probab=22.43 E-value=2.8e+02 Score=22.73 Aligned_cols=49 Identities=18% Similarity=0.275 Sum_probs=35.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017669 299 YLLSVSLFLWLSAVVSSFFYFQKVTVIAMTVSSSLGRRRLLAEINSFIAVFILAGQLTL 357 (368)
Q Consensus 299 YLl~Ial~v~l~~~vst~lyf~~~~~v~~~~~d~~~rt~ffa~i~~~v~v~tl~~Qlfl 357 (368)
|+++++.+++.+.+ ....++.+|++. .---++.+-..+++.++....|+
T Consensus 2 ~llg~~~~ii~f~~---------S~~lr~r~p~k~-~~~il~~ililis~~~v~~S~f~ 50 (81)
T PF14150_consen 2 YLLGIVTFIIVFGV---------SVLLRKRFPKKQ-PEIILPLILILISLLTVLISIFL 50 (81)
T ss_pred cHHHHHHHHHHHHH---------HHHHHHhCCCcc-hhHHHHHHHHHHHHHHHHHHHhe
Confidence 56676666665544 356778888888 66667777778888888777776
No 181
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=22.37 E-value=8.5e+02 Score=24.92 Aligned_cols=37 Identities=11% Similarity=0.007 Sum_probs=29.8
Q ss_pred hHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHH
Q 017669 65 GLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFF 103 (368)
Q Consensus 65 ~Lf~~t~~~~l~~~ply~~l~~~~r~sr~r~~~~~~~fF 103 (368)
++.....+..++..++.|++.. |++||+.+.+....+
T Consensus 60 ~~~~~~~ig~~ig~~~~g~l~d--~~Grr~~~~~~~~~~ 96 (502)
T TIGR00887 60 AVNGSASIGTLAGQLFFGWLAD--KLGRKRVYGMELIIM 96 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--hhccHHHHHHHHHHH
Confidence 4446667888999999999999 999999986655555
No 182
>PF10410 DnaB_bind: DnaB-helicase binding domain of primase; InterPro: IPR019475 This entry represents the C-terminal region three-helical domain of DNA primase []. Primases synthesise short RNA strands on single-stranded DNA templates, thereby generating the hybrid duplexes required for the initiation of synthesis by DNA polymerases. Primases are recruited to single-stranded DNA by helicases - this domain binds DnaB-helicase []. It is associated with the Toprim domain IPR006171 from INTERPRO, which is the central catalytic core. ; GO: 0016779 nucleotidyltransferase activity; PDB: 1EQN_E 1DD9_A 3B39_B 1DDE_A.
Probab=22.35 E-value=2.2e+02 Score=20.37 Aligned_cols=52 Identities=13% Similarity=0.036 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHH-HHHHHHHhHHHHHHHhcC
Q 017669 316 FFYFQKVTVIAMT-VSSSLGRRRLLAEINSFIAVF-ILAGQLTLTGTSFLLLGL 367 (368)
Q Consensus 316 ~lyf~~~~~v~~~-~~d~~~rt~ffa~i~~~v~v~-tl~~QlflTgrii~~~Gv 367 (368)
+.+|....+.++. ..++++|.++...+--.++-+ .=+.+=....++.+++|+
T Consensus 1 L~ef~~~~l~~~~dl~~~egk~~~~~~~~~~i~~i~~~i~r~~y~~~la~~~~i 54 (59)
T PF10410_consen 1 LSEFLIERLSKGYDLDTPEGKAEAVREAAPLIAQIPDPIERELYIRELAERLGI 54 (59)
T ss_dssp HHHHHHHHHGGGS-TTSHHHHHHHHHHHHHHHTT--SHHHHHHHHHHHHHHCT-
T ss_pred CHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCc
Confidence 4677777777765 479999999998886666555 333343445577777665
No 183
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=22.26 E-value=3.6e+02 Score=26.32 Aligned_cols=42 Identities=14% Similarity=0.159 Sum_probs=29.3
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHH
Q 017669 61 SKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFS 104 (368)
Q Consensus 61 e~Lp~Lf~~t~~~~l~~~ply~~l~~~~r~sr~r~~~~~~~fF~ 104 (368)
+..-++.....+...+..+..+++.+ |++|++.+......++
T Consensus 254 ~~~g~~~~~~~i~~~~~~~~~g~l~~--r~g~~~~l~~~~~l~~ 295 (396)
T TIGR00882 254 RVFGYVTTMGELLNALIMFCAPLIIN--RIGAKNALLIAGTIMS 295 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HhccchhHHHHHHHHH
Confidence 33445555555666777899999999 9999998755544443
No 184
>PRK05208 hypothetical protein; Provisional
Probab=22.10 E-value=4.8e+02 Score=24.06 Aligned_cols=24 Identities=42% Similarity=0.672 Sum_probs=19.1
Q ss_pred HHHhhchhHHHHHHHHHHHHHHHHH
Q 017669 292 RLIFSSNYLLSVSLFLWLSAVVSSF 316 (368)
Q Consensus 292 ~~i~rSpYLl~Ial~v~l~~~vst~ 316 (368)
+.+++|||++ ++++..+-....-+
T Consensus 11 ~~l~~sRwl~-~pv~~gLi~a~~l~ 34 (168)
T PRK05208 11 RLIFASRWLQ-APLYLGLSLALAVL 34 (168)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 5789999996 88888777776666
No 185
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=21.97 E-value=7.8e+02 Score=24.37 Aligned_cols=23 Identities=22% Similarity=0.150 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhChh
Q 017669 178 VALLNLITISSTWARVIDVMDSE 200 (368)
Q Consensus 178 vsVfnL~~iSlFWs~~~dvf~~~ 200 (368)
.+.++......+|+..+|+++++
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~p~~ 312 (368)
T TIGR00903 290 AGLLMLPAYAIIMDWIGKFCDKE 312 (368)
T ss_pred HHHhhhhhHHHHHHHHHHhcchh
Confidence 33344445567999999999998
No 186
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1. It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane
Probab=21.42 E-value=9.5e+02 Score=25.15 Aligned_cols=76 Identities=16% Similarity=0.038 Sum_probs=43.4
Q ss_pred hHhHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhc
Q 017669 287 ILDGLRLIFSSNYLLSVSLFLWLSAVVSSFFYFQKVTVIAMTVSSSLGRRRLLAEINSFIAVFILAGQLTLTGTSFLLLG 366 (368)
Q Consensus 287 ~~~g~~~i~rSpYLl~Ial~v~l~~~vst~lyf~~~~~v~~~~~d~~~rt~ffa~i~~~v~v~tl~~QlflTgrii~~~G 366 (368)
..+|.+.-+|.|=.+.--.+.+||-.|=+| .-+-....+.+--++. .-..+=.+ ++++=+..-++-.++.+|.|
T Consensus 248 ~~~~w~~Y~~q~vflas~alalLY~TVLsf-~~lmt~yl~~~G~s~~-~igi~R~~----gav~Gl~gT~~~p~l~~riG 321 (432)
T PF06963_consen 248 IIRGWRTYFRQPVFLASFALALLYFTVLSF-GGLMTAYLKSQGYSPS-VIGIFRGL----GAVFGLLGTWVYPWLMKRIG 321 (432)
T ss_pred HhccHHHHHhCHHHHHHHHHHHHHHHHhcC-cHHHHHHHHHCCCCHH-HHHHHHHH----HHHHHHHHHHHHHHHHHHhc
Confidence 456667777888666666666777666665 5555666666633322 22222222 23333344456778888888
Q ss_pred CC
Q 017669 367 LL 368 (368)
Q Consensus 367 v~ 368 (368)
++
T Consensus 322 lv 323 (432)
T PF06963_consen 322 LV 323 (432)
T ss_pred ch
Confidence 64
No 187
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=20.87 E-value=8.6e+02 Score=24.39 Aligned_cols=43 Identities=7% Similarity=0.025 Sum_probs=30.8
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHH
Q 017669 61 SKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSV 105 (368)
Q Consensus 61 e~Lp~Lf~~t~~~~l~~~ply~~l~~~~r~sr~r~~~~~~~fF~~ 105 (368)
+..-.+.....+..++..++.+++.+ |++||+.+...+...++
T Consensus 251 ~~~g~~~~~~~i~~i~~~~~~g~l~d--r~g~r~~l~~~~~~~~v 293 (418)
T TIGR00889 251 KNASIWMSLSQFSEIFFILTIPFFLK--RFGIKKVMLLSLVAWAL 293 (418)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH--HhCcHHHHHHHHHHHHH
Confidence 33444445555667777899999999 99999998777665533
Done!