Query 017669
Match_columns 368
No_of_seqs 105 out of 161
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 03:04:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017669.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017669hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3o7q_A L-fucose-proton symport 98.3 0.0011 3.7E-08 63.0 27.7 83 26-110 24-108 (438)
2 1pw4_A Glycerol-3-phosphate tr 97.8 0.0022 7.6E-08 60.9 21.0 58 48-110 52-109 (451)
3 2gfp_A EMRD, multidrug resista 97.2 0.0053 1.8E-07 57.3 13.9 74 33-108 5-80 (375)
4 2cfq_A Lactose permease; trans 96.4 0.44 1.5E-05 45.7 20.6 69 33-105 12-85 (417)
5 4aps_A DI-OR tripeptide H+ sym 96.2 0.22 7.4E-06 48.1 17.4 73 29-105 14-97 (491)
6 2xut_A Proton/peptide symporte 89.0 6.6 0.00023 38.0 13.9 72 31-104 15-96 (524)
7 1pw4_A Glycerol-3-phosphate tr 85.0 7.4 0.00025 36.4 11.4 70 29-100 253-327 (451)
8 4gc0_A D-xylose-proton symport 78.1 35 0.0012 32.3 13.5 41 68-110 319-359 (491)
9 2cfq_A Lactose permease; trans 76.6 22 0.00074 33.7 11.5 37 63-101 261-297 (417)
10 4aps_A DI-OR tripeptide H+ sym 73.4 19 0.00063 34.4 10.1 34 61-96 319-352 (491)
11 3o7q_A L-fucose-proton symport 53.4 53 0.0018 30.3 8.9 39 63-103 297-335 (438)
12 4gc0_A D-xylose-proton symport 35.2 1.1E+02 0.0037 28.9 8.0 71 295-366 5-83 (491)
No 1
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=98.26 E-value=0.0011 Score=63.04 Aligned_cols=83 Identities=11% Similarity=-0.005 Sum_probs=58.8
Q ss_pred chhHHHHHHHHHHHHHHHHhhhhhhhhhhhhccC--cCcchhHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHH
Q 017669 26 ETSALLHSSSCFFFILSAYFVVLPLRDEGAISLG--LSKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFF 103 (368)
Q Consensus 26 E~~~~l~~~l~fF~il~aYyiLRPvRD~l~v~~G--~e~Lp~Lf~~t~~~~l~~~ply~~l~~~~r~sr~r~~~~~~~fF 103 (368)
.....+...+.+|+....+.+.-|+-..+.-+.| .+++-++.....+...+..|+.|++.+ |++||+.+.+....+
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~d--r~g~r~~l~~~~~~~ 101 (438)
T 3o7q_A 24 YIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMK--KLSYKAGIITGLFLY 101 (438)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHH--HSCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHH--HhcchHHHHHHHHHH
Confidence 3445566666777777666666665444433333 445667777778889999999999999 999999988877777
Q ss_pred HHHHHHH
Q 017669 104 SVSLLVF 110 (368)
Q Consensus 104 ~~~LL~F 110 (368)
++..+++
T Consensus 102 ~~~~~~~ 108 (438)
T 3o7q_A 102 ALGAALF 108 (438)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5554444
No 2
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=97.85 E-value=0.0022 Score=60.94 Aligned_cols=58 Identities=12% Similarity=-0.017 Sum_probs=44.2
Q ss_pred hhhhhhhhhccCcCcchhHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHH
Q 017669 48 LPLRDEGAISLGLSKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVSLLVF 110 (368)
Q Consensus 48 RPvRD~l~v~~G~e~Lp~Lf~~t~~~~l~~~ply~~l~~~~r~sr~r~~~~~~~fF~~~LL~F 110 (368)
-++.+++ .+.+++-++.....+...+..|+.|++++ |++||+++.+....+++..+++
T Consensus 52 ~~~~~~~---~s~~~~g~~~~~~~~~~~~~~~~~G~l~d--r~g~r~~l~~~~~~~~~~~~~~ 109 (451)
T 1pw4_A 52 PYLVEQG---FSRGDLGFALSGISIAYGFSKFIMGSVSD--RSNPRVFLPAGLILAAAVMLFM 109 (451)
T ss_dssp HHTTSST---TCSSCHHHHHHHHHHHHHHHHHHHHHHHH--HSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHh---ccHhHHHHHHHHHHHHHHHHHHhHHHHHH--hcCchHHHHHHHHHHHHHHHHH
Confidence 3444544 45667888888888999999999999999 9999998877776665444433
No 3
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=97.20 E-value=0.0053 Score=57.33 Aligned_cols=74 Identities=11% Similarity=0.054 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhccCc--CcchhHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHHHHH
Q 017669 33 SSSCFFFILSAYFVVLPLRDEGAISLGL--SKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVSLL 108 (368)
Q Consensus 33 ~~l~fF~il~aYyiLRPvRD~l~v~~G~--e~Lp~Lf~~t~~~~l~~~ply~~l~~~~r~sr~r~~~~~~~fF~~~LL 108 (368)
..+..|+...++.+.-|.-..+.-+.|. ++.-++.....+...+..|+.|++++ |++||+.+.......++..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d--r~g~r~~~~~~~~~~~~~~~ 80 (375)
T 2gfp_A 5 LVLLVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISD--RVGRRPVILVGMSIFMLATL 80 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHT--TSCCCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhCCchhHHHHHHHHHHHHH
Confidence 3444455555555555655544444343 44667778888899999999999999 99999998877666644433
No 4
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=96.39 E-value=0.44 Score=45.66 Aligned_cols=69 Identities=25% Similarity=0.269 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHhhhhh-----hhhhhhhccCcCcchhHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHH
Q 017669 33 SSSCFFFILSAYFVVLP-----LRDEGAISLGLSKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSV 105 (368)
Q Consensus 33 ~~l~fF~il~aYyiLRP-----vRD~l~v~~G~e~Lp~Lf~~t~~~~l~~~ply~~l~~~~r~sr~r~~~~~~~fF~~ 105 (368)
.....|+..+++...-| +.|+++. ..++.-++.....+.+.+..|+.|+++. |+.||+.+.+....+++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~l~~~~g~--s~~~~g~~~~~~~~~~~i~~~~~G~lsD--r~Grr~~l~~~~~~~~~ 85 (417)
T 2cfq_A 12 FGLFFFFYFFIMGAYFPFFPIWLHDINHI--SKSDTGIIFAAISLFSLLFQPLFGLLSD--KLGLRKYLLWIITGMLV 85 (417)
T ss_dssp HHHHHHHHHHHHHHHTTTHHHHHHTTTCC--CTTTSHHHHHHHHHHHHHHHHHHHHHHT--TSTTCCHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhcchHHHHHHHHHHHH
Confidence 33444444444444333 3444433 3456777778888999999999999999 99999998776665543
No 5
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=96.21 E-value=0.22 Score=48.13 Aligned_cols=73 Identities=4% Similarity=-0.010 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhh-----hhh-----hhhccCcCcchhHHHHHHHHHHHHHHHHHHhhcCCC-CcchhHHH
Q 017669 29 ALLHSSSCFFFILSAYFVVLPL-----RDE-----GAISLGLSKLPGLFVGSLILTLIAAPVSTLIFSLPN-LSKAKALV 97 (368)
Q Consensus 29 ~~l~~~l~fF~il~aYyiLRPv-----RD~-----l~v~~G~e~Lp~Lf~~t~~~~l~~~ply~~l~~~~r-~sr~r~~~ 97 (368)
.........|+..++||...+. .+. ++ .+.++.-++.....+...+..|+.|++++ | ++||+.+.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~s~~~~~~~~~~~~~~~~~~~~~~g~l~d--r~~g~r~~~~ 89 (491)
T 4aps_A 14 GLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLH--ITRATAASIMAIYASMVYLSGTIGGFVAD--RIIGARPAVF 89 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCC--SCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HTSCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHh--ccccchHHHH
Confidence 3444445555555555544332 222 22 23445667777788899999999999999 9 89999987
Q ss_pred HHHHHHHH
Q 017669 98 LIHRFFSV 105 (368)
Q Consensus 98 ~~~~fF~~ 105 (368)
.....+++
T Consensus 90 ~~~~~~~~ 97 (491)
T 4aps_A 90 WGGVLIML 97 (491)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 76655533
No 6
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=88.97 E-value=6.6 Score=38.00 Aligned_cols=72 Identities=8% Similarity=0.014 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHhhhhhh-----hhhhhhc----cCcCcchhHHHHHHHHHHHHHHHHHHhhcCCCC-cchhHHHHHH
Q 017669 31 LHSSSCFFFILSAYFVVLPL-----RDEGAIS----LGLSKLPGLFVGSLILTLIAAPVSTLIFSLPNL-SKAKALVLIH 100 (368)
Q Consensus 31 l~~~l~fF~il~aYyiLRPv-----RD~l~v~----~G~e~Lp~Lf~~t~~~~l~~~ply~~l~~~~r~-sr~r~~~~~~ 100 (368)
....+..|+...+||...+. .++++-. ...++.-++.....+.+.+..|+.|++++ |+ +||+.+....
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~d--r~~g~r~~~~~~~ 92 (524)
T 2xut_A 15 PYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIAD--RFFGKYNTILWLS 92 (524)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHT--TSSCSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhcchHHHHHHH
Confidence 33445555555555544433 3333300 23455677777778889999999999999 99 9999876655
Q ss_pred HHHH
Q 017669 101 RFFS 104 (368)
Q Consensus 101 ~fF~ 104 (368)
..++
T Consensus 93 ~~~~ 96 (524)
T 2xut_A 93 LIYC 96 (524)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5553
No 7
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=85.01 E-value=7.4 Score=36.38 Aligned_cols=70 Identities=7% Similarity=-0.047 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhhhc-cCc--CcchhHHHHHHHHHHHHHHHHHHhhcCCCC--cchhHHHHHH
Q 017669 29 ALLHSSSCFFFILSAYFVVLPLRDEGAIS-LGL--SKLPGLFVGSLILTLIAAPVSTLIFSLPNL--SKAKALVLIH 100 (368)
Q Consensus 29 ~~l~~~l~fF~il~aYyiLRPvRD~l~v~-~G~--e~Lp~Lf~~t~~~~l~~~ply~~l~~~~r~--sr~r~~~~~~ 100 (368)
.+....+..|+..+.++.+-..=-....+ .|. ++.-++.....++.++..++.+++.+ |+ +|++.+....
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~--~~~~~~~~~~~~~~ 327 (451)
T 1pw4_A 253 LLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSD--KVFRGNRGATGVFF 327 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HTSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhcCCchhHHHHH
Confidence 34444444555555444433322222222 233 33445556666788899999999999 98 8887765444
No 8
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=78.10 E-value=35 Score=32.35 Aligned_cols=41 Identities=2% Similarity=0.099 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHH
Q 017669 68 VGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVSLLVF 110 (368)
Q Consensus 68 ~~t~~~~l~~~ply~~l~~~~r~sr~r~~~~~~~fF~~~LL~F 110 (368)
.......++.+++.+++++ |+.||+.........++.++.+
T Consensus 319 ~~~~~~~~~~~~~~~~l~d--r~Grr~~~~~~~~~~~~~~~~l 359 (491)
T 4gc0_A 319 IIVGVINLTFTVLAIMTVD--KFGRKPLQIIGALGMAIGMFSL 359 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHH--HHCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH--hhcCcchhccchHHHHHHHHHH
Confidence 4455777888899999999 9999998866665554444433
No 9
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=76.57 E-value=22 Score=33.70 Aligned_cols=37 Identities=16% Similarity=0.118 Sum_probs=26.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHH
Q 017669 63 LPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHR 101 (368)
Q Consensus 63 Lp~Lf~~t~~~~l~~~ply~~l~~~~r~sr~r~~~~~~~ 101 (368)
..++.....++.++..++.+++++ |++|++.+.....
T Consensus 261 ~g~~~~~~~~~~~~~~~~~g~l~d--r~g~~~~l~~~~~ 297 (417)
T 2cfq_A 261 FGYVTTMGELLNASIMFFAPLIIN--RIGGKNALLLAGT 297 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH--HHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HhcHHHHHHHHHH
Confidence 344444445666778899999999 9999998764443
No 10
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=73.38 E-value=19 Score=34.38 Aligned_cols=34 Identities=6% Similarity=0.100 Sum_probs=24.1
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHhhcCCCCcchhHH
Q 017669 61 SKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKAL 96 (368)
Q Consensus 61 e~Lp~Lf~~t~~~~l~~~ply~~l~~~~r~sr~r~~ 96 (368)
..-.++........++..++.+++++ |+.||+..
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~l~~--r~~~r~~~ 352 (491)
T 4aps_A 319 FPVSWFQSLNPLFIMLYTPFFAWLWT--AWKKNQPS 352 (491)
T ss_dssp SCSGGGTTHHHHHHHHHHHHHHHHHH--HTTTC---
T ss_pred cCHHHHhccchHHHHHHHHHHHHHHH--HHhccCCC
Confidence 34455556666778888999999999 99988654
No 11
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=53.43 E-value=53 Score=30.35 Aligned_cols=39 Identities=15% Similarity=0.218 Sum_probs=29.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHH
Q 017669 63 LPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFF 103 (368)
Q Consensus 63 Lp~Lf~~t~~~~l~~~ply~~l~~~~r~sr~r~~~~~~~fF 103 (368)
.-++.....+++++..++.+++.+ |++|++.+.......
T Consensus 297 ~~~~~~~~~~~~~~~~~~~g~l~~--r~~~~~~~~~~~~~~ 335 (438)
T 3o7q_A 297 AANYLTGTMVCFFIGRFTGTWLIS--RFAPHKVLAAYALIA 335 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH--HSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HhcchHHHHHHHHHH
Confidence 344455566788889999999999 999999876555443
No 12
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=35.20 E-value=1.1e+02 Score=28.86 Aligned_cols=71 Identities=20% Similarity=0.173 Sum_probs=40.8
Q ss_pred hhchhHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhc
Q 017669 295 FSSNYLLSVSLFLWLSA--------VVSSFFYFQKVTVIAMTVSSSLGRRRLLAEINSFIAVFILAGQLTLTGTSFLLLG 366 (368)
Q Consensus 295 ~rSpYLl~Ial~v~l~~--------~vst~lyf~~~~~v~~~~~d~~~rt~ffa~i~~~v~v~tl~~QlflTgrii~~~G 366 (368)
.+++|+..++++.-+.. +++..+...+.+.......+...-+...|.+.+...+-.++.+++ .|++..|+|
T Consensus 5 ~~~~y~~~i~~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~-~G~laDr~G 83 (491)
T 4gc0_A 5 YNSSYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGAL-GGYCSNRFG 83 (491)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHH-HHHHHHHTC
T ss_pred cChHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhc
Confidence 36788887776654322 223333333333333333445555666777777666655555554 789998887
Done!