BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017670
(368 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q1LZD9|PSPC1_BOVIN Paraspeckle component 1 OS=Bos taurus GN=PSPC1 PE=2 SV=1
Length = 520
Score = 38.1 bits (87), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 74/176 (42%), Gaps = 18/176 (10%)
Query: 195 RIRVAHEHGTLVVLENLDPSYTSTVVEDLVWHAFKE-NCSAKMIPRVAFASPYFGQSFVI 253
RIR A HG + ++NL P V +L+ AF + K + V G+ FV
Sbjct: 145 RIRFAT-HGAALTVKNLSP----VVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVE 199
Query: 254 FKTREVAELVVTKLEEGCLLLSNGRPLLGSIGTPCFTGKQSKFVGHLAL-DKLKFQMQRE 312
F + A + + +G LL+ + P +F L +KL + Q+
Sbjct: 200 FAAKPPARKALERCGDGAFLLT-------TTPRPVIVEPMEQFDDEDGLPEKLMQKTQQY 252
Query: 313 MREAVSTSHCSQPNSLEYDMAIEWSLLQERLDCAWKKLYEQQELELKKLKVKLKSK 368
+E +QP + E++ A W LD K+ EQ + +++ K KL+++
Sbjct: 253 HKEREQPPRFAQPGTFEFEYASRWKA----LDEMEKQQREQVDRNIREAKEKLEAE 304
>sp|Q4KLH4|PSPC1_RAT Paraspeckle component 1 OS=Rattus norvegicus GN=Pspc1 PE=2 SV=1
Length = 522
Score = 38.1 bits (87), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 74/176 (42%), Gaps = 18/176 (10%)
Query: 195 RIRVAHEHGTLVVLENLDPSYTSTVVEDLVWHAFKE-NCSAKMIPRVAFASPYFGQSFVI 253
RIR A HG + ++NL P V +L+ AF + K + V G+ FV
Sbjct: 147 RIRFAT-HGAALTVKNLSP----VVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVE 201
Query: 254 FKTREVAELVVTKLEEGCLLLSNGRPLLGSIGTPCFTGKQSKFVGHLAL-DKLKFQMQRE 312
F + A + + +G LL+ + P +F L +KL + Q+
Sbjct: 202 FAAKPPARKALERCGDGAFLLT-------TTPRPVIVEPMEQFDDEDGLPEKLMQKTQQY 254
Query: 313 MREAVSTSHCSQPNSLEYDMAIEWSLLQERLDCAWKKLYEQQELELKKLKVKLKSK 368
+E +QP + E++ A W LD K+ EQ + +++ K KL+++
Sbjct: 255 HKEREQPPRFAQPGTFEFEYASRWKA----LDEMEKQQREQVDRNIREAKEKLEAE 306
>sp|Q8R326|PSPC1_MOUSE Paraspeckle component 1 OS=Mus musculus GN=Pspc1 PE=1 SV=1
Length = 523
Score = 38.1 bits (87), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 74/176 (42%), Gaps = 18/176 (10%)
Query: 195 RIRVAHEHGTLVVLENLDPSYTSTVVEDLVWHAFKE-NCSAKMIPRVAFASPYFGQSFVI 253
RIR A HG + ++NL P V +L+ AF + K + V G+ FV
Sbjct: 147 RIRFAT-HGAALTVKNLSP----VVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVE 201
Query: 254 FKTREVAELVVTKLEEGCLLLSNGRPLLGSIGTPCFTGKQSKFVGHLAL-DKLKFQMQRE 312
F + A + + +G LL+ + P +F L +KL + Q+
Sbjct: 202 FAAKPPARKALERCGDGAFLLT-------TTPRPVIVEPMEQFDDEDGLPEKLMQKTQQY 254
Query: 313 MREAVSTSHCSQPNSLEYDMAIEWSLLQERLDCAWKKLYEQQELELKKLKVKLKSK 368
+E +QP + E++ A W LD K+ EQ + +++ K KL+++
Sbjct: 255 HKEREQPPRFAQPGTFEFEYASRWKA----LDEMEKQQREQVDRNIREAKEKLEAE 306
>sp|Q8WXF1|PSPC1_HUMAN Paraspeckle component 1 OS=Homo sapiens GN=PSPC1 PE=1 SV=1
Length = 523
Score = 37.7 bits (86), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 74/176 (42%), Gaps = 18/176 (10%)
Query: 195 RIRVAHEHGTLVVLENLDPSYTSTVVEDLVWHAFKE-NCSAKMIPRVAFASPYFGQSFVI 253
RIR A HG + ++NL P V +L+ AF + K + V G+ FV
Sbjct: 148 RIRFAT-HGAALTVKNLSP----VVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVE 202
Query: 254 FKTREVAELVVTKLEEGCLLLSNGRPLLGSIGTPCFTGKQSKFVGHLAL-DKLKFQMQRE 312
F + A + + +G LL+ + P +F L +KL + Q+
Sbjct: 203 FAAKPPARKALERCGDGAFLLT-------TTPRPVIVEPMEQFDDEDGLPEKLMQKTQQY 255
Query: 313 MREAVSTSHCSQPNSLEYDMAIEWSLLQERLDCAWKKLYEQQELELKKLKVKLKSK 368
+E +QP + E++ A W LD K+ EQ + +++ K KL+++
Sbjct: 256 HKEREQPPRFAQPGTFEFEYASRWKA----LDEMEKQQREQVDRNIREAKEKLEAE 307
>sp|Q5ZK88|PSPC1_CHICK Paraspeckle component 1 OS=Gallus gallus GN=PSPC1 PE=2 SV=1
Length = 523
Score = 37.4 bits (85), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 74/176 (42%), Gaps = 18/176 (10%)
Query: 195 RIRVAHEHGTLVVLENLDPSYTSTVVEDLVWHAFKE-NCSAKMIPRVAFASPYFGQSFVI 253
RIR A HG + ++NL P V +L+ AF + + + V G+ FV
Sbjct: 147 RIRFAT-HGAALTVKNLSP----VVSNELLEQAFSQFGPVERAVVVVDDRGRATGKGFVE 201
Query: 254 FKTREVAELVVTKLEEGCLLLSNGRPLLGSIGTPCFTGKQSKFVGHLAL-DKLKFQMQRE 312
F + A + + +G LL+ + P +F L +KL + Q+
Sbjct: 202 FAAKPPARKALERCSDGAFLLT-------TTPRPVVVEPMEQFDDEDGLPEKLMQKTQQY 254
Query: 313 MREAVSTSHCSQPNSLEYDMAIEWSLLQERLDCAWKKLYEQQELELKKLKVKLKSK 368
+E +QP + E++ A W LD K+ EQ + +++ K KL+++
Sbjct: 255 HKEREQPPRFAQPGTFEFEYASRWKA----LDEMEKQQREQVDRNIREAKEKLEAE 306
>sp|Q5FVM4|NONO_RAT Non-POU domain-containing octamer-binding protein OS=Rattus
norvegicus GN=Nono PE=2 SV=3
Length = 476
Score = 34.3 bits (77), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 71/173 (41%), Gaps = 19/173 (10%)
Query: 195 RIRVAHEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIF 254
R+R A +L V NL P Y S + + + F + A +I V G+ V F
Sbjct: 145 RVRFACHSASLTV-RNL-PQYVSNELLEEAFSVFGQVERAVVI--VDDRGRPSGKGIVEF 200
Query: 255 KTREVAELVVTKLEEGCLLLSNGRPLLGSIGTPCFTGKQSKFVGHLAL-DKLKFQMQREM 313
+ A + + EG LL+ + P + L +KL + Q+
Sbjct: 201 SGKPAARKALDRCSEGSFLLT-------TFPRPVTVEPMDQLDDEEGLPEKLVIKNQQFH 253
Query: 314 REAVSTSHCSQPNSLEYDMAIEWSLL-------QERLDCAWKKLYEQQELELK 359
+E +QP S EY+ A+ W L Q+++D K+ E+ E+E++
Sbjct: 254 KEREQPPRFAQPGSFEYEYAMRWKALIEMEKQQQDQVDRNIKEAREKLEMEME 306
>sp|Q1JPY8|PSPC1_DANRE Paraspeckle component 1 OS=Danio rerio GN=pspc1 PE=2 SV=1
Length = 512
Score = 34.3 bits (77), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 76/177 (42%), Gaps = 20/177 (11%)
Query: 195 RIRVAHEHGTLVVLENLDPSYTSTVVEDLVWHAFKE-NCSAKMIPRVAFASPYFGQSFVI 253
RIR A HG + + NL P V +L+ AF + + I V G+ V
Sbjct: 142 RIRFA-THGAALTVRNLSP----VVSNELLEQAFSQFGPVERAIVIVDDRGRPTGKGIVE 196
Query: 254 FKTREVAELVVTKLEEGCLLLSNG-RPLLGSIGTPCFTGKQSKFVGHLALDK-LKFQMQR 311
F + A + +G LLL+ RP+ I P + L K ++ +R
Sbjct: 197 FANKPAARKALDHCADGALLLTTSPRPV---ILEPTEQYDDEDGLPEKLLQKSAQYHKER 253
Query: 312 EMREAVSTSHCSQPNSLEYDMAIEWSLLQERLDCAWKKLYEQQELELKKLKVKLKSK 368
E + H +QP + E++ + W L E +D K+ EQ E +++ K KL+++
Sbjct: 254 EHK-----PHFAQPGTFEFEYSSRWKALDE-MD---KQQREQVERNIQEAKEKLETE 301
>sp|Q99K48|NONO_MOUSE Non-POU domain-containing octamer-binding protein OS=Mus musculus
GN=Nono PE=1 SV=3
Length = 473
Score = 33.9 bits (76), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 71/173 (41%), Gaps = 19/173 (10%)
Query: 195 RIRVAHEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIF 254
R+R A +L V NL P Y S + + + F + A +I V G+ V F
Sbjct: 142 RVRFACHSASLTV-RNL-PQYVSNELLEEAFSVFGQVERAVVI--VDDRGRPSGKGIVEF 197
Query: 255 KTREVAELVVTKLEEGCLLLSNGRPLLGSIGTPCFTGKQSKFVGHLAL-DKLKFQMQREM 313
+ A + + EG LL+ + P + L +KL + Q+
Sbjct: 198 SGKPAARKALDRCSEGSFLLT-------TFPRPVTVEPMDQLDDEEGLPEKLVIKNQQFH 250
Query: 314 REAVSTSHCSQPNSLEYDMAIEWSLL-------QERLDCAWKKLYEQQELELK 359
+E +QP S EY+ A+ W L Q+++D K+ E+ E+E++
Sbjct: 251 KEREQPPRFAQPGSFEYEYAMRWKALIEMEKQQQDQVDRNIKEAREKLEMEME 303
>sp|Q5RFL9|NONO_PONAB Non-POU domain-containing octamer-binding protein OS=Pongo abelii
GN=NONO PE=2 SV=3
Length = 471
Score = 33.9 bits (76), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 71/173 (41%), Gaps = 19/173 (10%)
Query: 195 RIRVAHEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIF 254
R+R A +L V NL P Y S + + + F + A +I V G+ V F
Sbjct: 140 RVRFACHSASLTV-RNL-PQYVSNELLEEAFSVFGQVERAVVI--VDDRGRPSGKGIVEF 195
Query: 255 KTREVAELVVTKLEEGCLLLSNGRPLLGSIGTPCFTGKQSKFVGHLAL-DKLKFQMQREM 313
+ A + + EG LL+ + P + L +KL + Q+
Sbjct: 196 SGKPAARKALDRCSEGSFLLT-------TFPRPVTVEPMDQLDDEEGLPEKLVIKNQQFH 248
Query: 314 REAVSTSHCSQPNSLEYDMAIEWSLL-------QERLDCAWKKLYEQQELELK 359
+E +QP S EY+ A+ W L Q+++D K+ E+ E+E++
Sbjct: 249 KEREQPPRFAQPGSFEYEYAMRWKALIEMEKQQQDQVDRNIKEAREKLEMEME 301
>sp|Q15233|NONO_HUMAN Non-POU domain-containing octamer-binding protein OS=Homo sapiens
GN=NONO PE=1 SV=4
Length = 471
Score = 33.9 bits (76), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 71/173 (41%), Gaps = 19/173 (10%)
Query: 195 RIRVAHEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIF 254
R+R A +L V NL P Y S + + + F + A +I V G+ V F
Sbjct: 140 RVRFACHSASLTV-RNL-PQYVSNELLEEAFSVFGQVERAVVI--VDDRGRPSGKGIVEF 195
Query: 255 KTREVAELVVTKLEEGCLLLSNGRPLLGSIGTPCFTGKQSKFVGHLAL-DKLKFQMQREM 313
+ A + + EG LL+ + P + L +KL + Q+
Sbjct: 196 SGKPAARKALDRCSEGSFLLT-------TFPRPVTVEPMDQLDDEEGLPEKLVIKNQQFH 248
Query: 314 REAVSTSHCSQPNSLEYDMAIEWSLL-------QERLDCAWKKLYEQQELELK 359
+E +QP S EY+ A+ W L Q+++D K+ E+ E+E++
Sbjct: 249 KEREQPPRFAQPGSFEYEYAMRWKALIEMEKQQQDQVDRNIKEAREKLEMEME 301
>sp|Q197C1|ICP46_IIV3 Immediate-early protein ICP-46 homolog OS=Invertebrate iridescent
virus 3 GN=IIV3-039R PE=3 SV=1
Length = 443
Score = 33.9 bits (76), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 43/89 (48%), Gaps = 10/89 (11%)
Query: 195 RIRVAHEHGTLVVLENLDPSYTSTV---------VEDLVWHAFKENCSAKMIPRVAFASP 245
++RVA + ++ +L+ L P YT+T + D+++H + + ++P +P
Sbjct: 279 QLRVAQDDASIALLKQLFPQYTATFQSHEQSVDWLVDVIYHEYTKRKQRSLLPSDLTTTP 338
Query: 246 YFGQSFVIF-KTREVAELVVTKLEEGCLL 273
Q +F K + + + V+TK LL
Sbjct: 339 QIDQRMYLFIKNKLINKGVITKERIKALL 367
>sp|Q8MEX4|MATK_ZAMIT Maturase K OS=Zamia integrifolia GN=matK PE=3 SV=1
Length = 514
Score = 33.5 bits (75), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 32/60 (53%), Gaps = 6/60 (10%)
Query: 185 KWFKELPWEERIR-VAHEHGTLVVLENLD-----PSYTSTVVEDLVWHAFKENCSAKMIP 238
+W ++ P+ +R V HEH L++ NLD S +T + +W+++ C + ++P
Sbjct: 166 RWIQDAPFLHSLRFVLHEHRNLIISSNLDQLILIASKENTRLSLFLWNSYAYECESLLVP 225
>sp|Q8MEX7|MATK_MACCO Maturase K OS=Macrozamia communis GN=matK PE=3 SV=1
Length = 499
Score = 33.5 bits (75), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 6/60 (10%)
Query: 185 KWFKELPWEERIR-VAHEHGTLVVLENLD-----PSYTSTVVEDLVWHAFKENCSAKMIP 238
+W ++ P+ +R V HEH L++ NLD S +T + +W+ + C + ++P
Sbjct: 166 RWIQDAPFLHSLRSVLHEHRNLIISSNLDQLILIASKKNTRLSLFLWNYYAYECESLLVP 225
>sp|Q05174|LAT_NOCLA L-lysine-epsilon aminotransferase OS=Nocardia lactamdurans GN=lat
PE=3 SV=1
Length = 450
Score = 32.7 bits (73), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 62 FKDPNELYNGPSNKAKFD--SSRKVFDDKIKNRVQKLGLDSNVHGPKPTLATIADEDKSK 119
F D L + KA FD + + DD+ NR+Q L L+ + HG ++ + D SK
Sbjct: 123 FVDGGALAVENALKAAFDWKAQKLGLDDRAVNRLQVLHLERSFHGRSGYTMSLTNTDPSK 182
Query: 120 TKR 122
T R
Sbjct: 183 TAR 185
>sp|Q65UE1|POTA_MANSM Spermidine/putrescine import ATP-binding protein PotA OS=Mannheimia
succiniciproducens (strain MBEL55E) GN=potA PE=3 SV=1
Length = 373
Score = 32.3 bits (72), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Query: 65 PNELYNGPSN--KAKFDSSRKVFDDKIKNRVQKLGLDSNVHG 104
P E+Y PSN AKF +FD ++ NRV + + +NV G
Sbjct: 225 PREIYEEPSNLFVAKFIGEINIFDAQVLNRVDEKRVRANVEG 266
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.130 0.370
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 132,922,940
Number of Sequences: 539616
Number of extensions: 5451279
Number of successful extensions: 13052
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 100
Number of HSP's that attempted gapping in prelim test: 13023
Number of HSP's gapped (non-prelim): 112
length of query: 368
length of database: 191,569,459
effective HSP length: 119
effective length of query: 249
effective length of database: 127,355,155
effective search space: 31711433595
effective search space used: 31711433595
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 62 (28.5 bits)