Query 017670
Match_columns 368
No_of_seqs 25 out of 27
Neff 2.8
Searched_HMMs 46136
Date Fri Mar 29 02:25:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017670.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017670hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00076 RRM_1: RNA recognitio 99.0 7.5E-10 1.6E-14 78.9 5.4 69 206-280 1-69 (70)
2 KOG0533 RRM motif-containing p 98.9 1.2E-09 2.6E-14 103.1 6.5 74 200-281 79-155 (243)
3 PLN03134 glycine-rich RNA-bind 98.7 6.6E-08 1.4E-12 83.3 7.8 88 198-290 29-116 (144)
4 smart00362 RRM_2 RNA recogniti 98.5 8.8E-07 1.9E-11 61.0 7.4 70 206-282 2-71 (72)
5 cd00590 RRM RRM (RNA recogniti 98.4 2.4E-06 5.2E-11 59.1 7.6 73 205-283 1-73 (74)
6 TIGR01659 sex-lethal sex-letha 98.4 1.5E-06 3.2E-11 84.8 8.9 109 200-317 104-214 (346)
7 TIGR01661 ELAV_HUD_SF ELAV/HuD 98.3 2E-06 4.3E-11 79.7 7.6 95 202-301 2-98 (352)
8 TIGR01628 PABP-1234 polyadenyl 98.2 2.7E-06 5.8E-11 85.1 8.1 81 200-286 282-362 (562)
9 smart00360 RRM RNA recognition 98.2 4.4E-06 9.6E-11 57.1 6.4 70 208-282 1-70 (71)
10 TIGR01661 ELAV_HUD_SF ELAV/HuD 98.2 4.5E-06 9.7E-11 77.4 8.2 82 201-287 267-348 (352)
11 PF14259 RRM_6: RNA recognitio 98.2 2.5E-06 5.4E-11 62.3 4.2 69 206-280 1-69 (70)
12 TIGR01642 U2AF_lg U2 snRNP aux 98.1 8.4E-06 1.8E-10 79.7 8.1 82 198-284 170-256 (509)
13 TIGR01659 sex-lethal sex-letha 98.1 9E-06 2E-10 79.4 8.1 82 202-286 192-273 (346)
14 PLN03120 nucleic acid binding 98.0 1.6E-05 3.5E-10 76.4 8.1 76 202-286 3-78 (260)
15 TIGR01642 U2AF_lg U2 snRNP aux 98.0 1.8E-05 3.9E-10 77.3 8.0 82 200-286 292-373 (509)
16 TIGR01622 SF-CC1 splicing fact 98.0 1.5E-05 3.2E-10 77.1 7.3 79 203-286 186-264 (457)
17 TIGR01628 PABP-1234 polyadenyl 98.0 1.5E-05 3.3E-10 79.8 7.3 74 205-283 2-75 (562)
18 TIGR01622 SF-CC1 splicing fact 97.9 2.7E-05 5.8E-10 75.3 7.6 79 198-282 84-162 (457)
19 TIGR01648 hnRNP-R-Q heterogene 97.9 2.7E-05 5.9E-10 81.3 7.9 78 201-290 231-309 (578)
20 COG0724 RNA-binding proteins ( 97.9 6E-05 1.3E-09 62.3 7.9 80 203-287 115-194 (306)
21 TIGR01648 hnRNP-R-Q heterogene 97.9 5.2E-05 1.1E-09 79.3 9.0 107 200-315 55-161 (578)
22 TIGR01649 hnRNP-L_PTB hnRNP-L/ 97.8 5E-05 1.1E-09 75.9 7.6 76 200-285 272-348 (481)
23 TIGR01645 half-pint poly-U bin 97.8 5.2E-05 1.1E-09 79.9 7.3 81 198-283 102-182 (612)
24 TIGR01645 half-pint poly-U bin 97.7 9.9E-05 2.1E-09 77.8 7.8 83 200-287 201-283 (612)
25 KOG0121 Nuclear cap-binding pr 97.7 0.00015 3.2E-09 65.2 7.3 97 179-282 14-110 (153)
26 PLN03121 nucleic acid binding 97.6 0.00017 3.6E-09 69.0 7.4 76 201-285 3-78 (243)
27 KOG0131 Splicing factor 3b, su 97.5 0.00016 3.4E-09 67.6 5.6 97 201-302 7-106 (203)
28 smart00361 RRM_1 RNA recogniti 97.5 0.00031 6.8E-09 53.0 6.2 63 218-283 3-70 (70)
29 KOG0114 Predicted RNA-binding 97.4 0.00035 7.5E-09 61.0 6.4 74 200-281 15-88 (124)
30 TIGR01649 hnRNP-L_PTB hnRNP-L/ 97.4 0.0004 8.7E-09 69.6 7.6 73 201-279 392-465 (481)
31 KOG0110 RNA-binding protein (R 97.2 0.001 2.3E-08 71.3 7.8 125 203-332 515-653 (725)
32 KOG0107 Alternative splicing f 97.1 0.00058 1.3E-08 63.6 4.6 75 202-283 9-90 (195)
33 KOG0123 Polyadenylate-binding 97.0 0.0016 3.4E-08 64.8 6.5 71 206-285 79-150 (369)
34 KOG0117 Heterogeneous nuclear 97.0 0.0033 7.2E-08 65.1 8.8 107 201-315 81-187 (506)
35 PLN03213 repressor of silencin 96.8 0.0041 8.9E-08 65.6 8.2 79 201-288 8-88 (759)
36 PF13893 RRM_5: RNA recognitio 96.7 0.0018 4E-08 46.2 3.6 34 247-283 21-54 (56)
37 KOG4207 Predicted splicing fac 96.7 0.005 1.1E-07 59.1 7.4 86 200-290 10-98 (256)
38 KOG0148 Apoptosis-promoting RN 96.6 0.004 8.7E-08 61.4 5.9 76 201-280 4-134 (321)
39 KOG0153 Predicted RNA-binding 96.5 0.0034 7.4E-08 63.2 5.3 72 200-281 225-296 (377)
40 KOG0117 Heterogeneous nuclear 96.5 0.0042 9.1E-08 64.4 6.0 80 200-292 256-335 (506)
41 KOG4206 Spliceosomal protein s 96.4 0.0073 1.6E-07 57.4 6.1 67 205-280 11-82 (221)
42 KOG0148 Apoptosis-promoting RN 96.2 0.012 2.6E-07 58.2 6.7 91 188-289 149-239 (321)
43 KOG0123 Polyadenylate-binding 96.0 0.0073 1.6E-07 60.1 4.1 80 200-285 267-346 (369)
44 KOG4209 Splicing factor RNPS1, 95.7 0.013 2.8E-07 55.2 4.4 85 202-292 100-184 (231)
45 KOG0108 mRNA cleavage and poly 95.7 0.019 4E-07 59.0 5.7 75 204-283 19-93 (435)
46 KOG0122 Translation initiation 95.6 0.018 4E-07 56.1 5.3 64 204-270 190-254 (270)
47 KOG0127 Nucleolar protein fibr 95.4 0.037 8E-07 59.0 7.0 88 196-286 285-376 (678)
48 KOG0127 Nucleolar protein fibr 95.2 0.066 1.4E-06 57.1 7.8 79 205-289 119-197 (678)
49 KOG1548 Transcription elongati 95.0 0.06 1.3E-06 54.6 6.6 79 202-286 264-350 (382)
50 KOG4212 RNA-binding protein hn 94.8 0.07 1.5E-06 55.9 6.7 74 204-282 45-118 (608)
51 PF04059 RRM_2: RNA recognitio 94.5 0.12 2.6E-06 43.3 6.4 69 204-272 2-70 (97)
52 KOG0131 Splicing factor 3b, su 94.5 0.067 1.4E-06 50.5 5.3 95 200-302 93-187 (203)
53 KOG0130 RNA-binding protein RB 93.6 0.11 2.4E-06 47.6 4.8 75 202-281 71-145 (170)
54 PF11608 Limkain-b1: Limkain b 93.5 0.25 5.5E-06 41.8 6.3 71 204-284 3-73 (90)
55 PF08777 RRM_3: RNA binding mo 93.0 0.11 2.4E-06 43.4 3.5 60 203-270 1-60 (105)
56 KOG0106 Alternative splicing f 92.2 0.24 5.1E-06 47.1 4.9 62 204-275 2-63 (216)
57 PF03467 Smg4_UPF3: Smg-4/UPF3 92.0 0.082 1.8E-06 47.7 1.6 73 200-272 4-80 (176)
58 KOG4211 Splicing factor hnRNP- 91.6 0.3 6.5E-06 51.4 5.4 67 201-269 101-167 (510)
59 COG5175 MOT2 Transcriptional r 91.5 0.42 9.1E-06 49.1 6.1 81 202-287 113-202 (480)
60 KOG0110 RNA-binding protein (R 91.3 0.18 4E-06 54.7 3.7 73 203-281 613-686 (725)
61 KOG0149 Predicted RNA-binding 91.3 0.53 1.1E-05 45.8 6.4 111 204-320 13-132 (247)
62 KOG0144 RNA-binding protein CU 91.2 0.39 8.4E-06 50.3 5.7 89 203-295 124-213 (510)
63 KOG0147 Transcriptional coacti 88.9 0.7 1.5E-05 49.2 5.5 117 206-327 281-407 (549)
64 KOG0151 Predicted splicing reg 88.3 0.78 1.7E-05 50.6 5.5 82 199-285 170-254 (877)
65 KOG0115 RNA-binding protein p5 86.9 0.77 1.7E-05 45.3 4.0 120 204-341 32-160 (275)
66 KOG0105 Alternative splicing f 85.7 1.1 2.3E-05 43.1 4.3 62 202-268 5-66 (241)
67 KOG1365 RNA-binding protein Fu 84.2 1.4 3.1E-05 45.9 4.6 59 203-266 161-225 (508)
68 KOG4660 Protein Mei2, essentia 84.1 1.8 4E-05 46.1 5.5 65 200-272 73-137 (549)
69 KOG0145 RNA-binding protein EL 83.9 1.9 4.2E-05 43.2 5.2 66 203-270 127-192 (360)
70 KOG4211 Splicing factor hnRNP- 83.6 2 4.4E-05 45.5 5.5 58 204-266 11-68 (510)
71 KOG0120 Splicing factor U2AF, 82.6 3.4 7.4E-05 43.7 6.7 65 217-285 416-489 (500)
72 KOG0415 Predicted peptidyl pro 79.2 3.5 7.6E-05 42.8 5.3 66 204-279 240-310 (479)
73 KOG0120 Splicing factor U2AF, 76.2 2.7 5.9E-05 44.4 3.7 81 200-285 286-366 (500)
74 KOG2202 U2 snRNP splicing fact 75.1 1.8 3.9E-05 42.5 1.9 45 245-292 108-152 (260)
75 KOG0144 RNA-binding protein CU 73.7 6.1 0.00013 41.8 5.4 66 205-272 36-101 (510)
76 PF08075 NOPS: NOPS (NUC059) d 72.5 0.99 2.1E-05 34.9 -0.4 20 318-337 33-52 (52)
77 KOG0111 Cyclophilin-type pepti 72.3 4.3 9.3E-05 40.0 3.7 85 202-294 9-96 (298)
78 KOG4208 Nucleolar RNA-binding 72.3 7.9 0.00017 37.3 5.4 83 200-286 46-128 (214)
79 KOG0106 Alternative splicing f 71.5 1.9 4.1E-05 41.1 1.1 78 192-282 88-165 (216)
80 KOG0124 Polypyrimidine tract-b 66.7 8.5 0.00019 40.3 4.7 74 200-281 110-186 (544)
81 KOG0109 RNA-binding protein LA 65.5 5.6 0.00012 40.4 3.0 67 202-281 77-143 (346)
82 KOG4206 Spliceosomal protein s 64.7 13 0.00029 35.8 5.3 62 202-272 145-208 (221)
83 KOG0145 RNA-binding protein EL 63.4 19 0.0004 36.5 6.1 78 200-279 38-120 (360)
84 KOG0147 Transcriptional coacti 62.6 5.6 0.00012 42.6 2.6 97 185-285 404-525 (549)
85 KOG1548 Transcription elongati 58.9 21 0.00046 36.9 5.8 78 198-285 129-218 (382)
86 KOG0116 RasGAP SH3 binding pro 56.1 22 0.00048 36.9 5.5 87 201-300 286-372 (419)
87 KOG4212 RNA-binding protein hn 54.6 22 0.00047 38.2 5.1 69 200-281 533-604 (608)
88 PRK14548 50S ribosomal protein 53.2 56 0.0012 27.1 6.4 68 193-267 12-81 (84)
89 KOG1457 RNA binding protein (c 52.6 30 0.00065 34.4 5.5 67 204-272 35-102 (284)
90 KOG2193 IGF-II mRNA-binding pr 51.5 14 0.0003 39.4 3.2 106 205-332 3-111 (584)
91 PF02617 ClpS: ATP-dependent C 50.7 4.3 9.3E-05 32.1 -0.5 69 212-284 14-82 (82)
92 KOG0132 RNA polymerase II C-te 49.9 37 0.00081 38.4 6.2 90 182-285 401-492 (894)
93 PF14605 Nup35_RRM_2: Nup53/35 46.9 34 0.00074 25.4 3.8 20 245-264 34-53 (53)
94 KOG4454 RNA binding protein (R 45.9 7.9 0.00017 38.1 0.5 77 198-281 4-80 (267)
95 KOG2416 Acinus (induces apopto 45.2 25 0.00055 38.7 4.1 76 200-282 441-516 (718)
96 KOG0124 Polypyrimidine tract-b 43.2 82 0.0018 33.4 7.1 77 194-272 201-277 (544)
97 KOG0113 U1 small nuclear ribon 43.0 84 0.0018 32.2 7.0 73 204-281 102-174 (335)
98 KOG4307 RNA binding protein RB 42.3 26 0.00055 39.4 3.6 57 205-267 4-60 (944)
99 PF10309 DUF2414: Protein of u 39.9 82 0.0018 24.9 5.2 54 205-267 7-62 (62)
100 KOG1365 RNA-binding protein Fu 35.8 27 0.00058 37.0 2.4 61 204-267 281-344 (508)
101 KOG2559 Predicted pseudouridin 32.5 30 0.00066 34.7 2.1 123 200-342 129-260 (318)
102 cd08205 RuBisCO_IV_RLP Ribulos 30.7 76 0.0017 32.0 4.6 51 190-242 175-234 (367)
103 TIGR03636 L23_arch archaeal ri 29.7 2.4E+02 0.0052 23.0 6.5 70 193-267 5-74 (77)
104 PRK00033 clpS ATP-dependent Cl 29.1 92 0.002 26.5 4.2 69 205-284 29-97 (100)
105 KOG2068 MOT2 transcription fac 28.8 22 0.00047 36.2 0.4 37 249-288 127-163 (327)
106 PF13041 PPR_2: PPR repeat fam 27.8 45 0.00098 23.2 1.8 31 325-355 1-31 (50)
107 PTZ00191 60S ribosomal protein 26.9 2.1E+02 0.0046 26.2 6.3 68 193-267 73-142 (145)
108 KOG3152 TBP-binding protein, a 26.0 49 0.0011 33.2 2.3 70 202-272 73-153 (278)
109 KOG4307 RNA binding protein RB 25.9 1.3E+02 0.0029 34.2 5.7 69 204-280 868-939 (944)
110 PF04847 Calcipressin: Calcipr 24.9 1.1E+02 0.0024 28.3 4.3 38 245-285 29-68 (184)
111 PF09673 TrbC_Ftype: Type-F co 23.3 2.9E+02 0.0063 23.3 6.2 91 194-304 15-107 (113)
112 PF11290 DUF3090: Protein of u 23.1 82 0.0018 29.6 3.1 51 242-301 121-171 (171)
113 PF03438 Pneumo_NS1: Pneumovir 21.6 36 0.00078 30.4 0.4 65 253-328 35-104 (136)
114 PF10859 DUF2660: Protein of u 21.5 73 0.0016 27.0 2.1 19 338-356 39-57 (86)
115 PRK05928 hemD uroporphyrinogen 21.1 2.1E+02 0.0045 25.2 5.0 35 248-282 52-86 (249)
116 PRK06252 methylcobalamin:coenz 20.3 1.2E+02 0.0025 29.1 3.6 41 190-230 259-306 (339)
117 KOG0105 Alternative splicing f 20.3 2.4E+02 0.0051 27.7 5.5 59 205-272 117-175 (241)
No 1
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=98.99 E-value=7.5e-10 Score=78.88 Aligned_cols=69 Identities=28% Similarity=0.321 Sum_probs=61.9
Q ss_pred EEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCcee
Q 017670 206 VVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 280 (368)
Q Consensus 206 V~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL 280 (368)
|||.||.+.+|..||.++|.+.+.. +.+++++. .+..+.|.|||.|.+.++|+.|+..|++..+ +|++|
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i-~~~~~~~~--~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~---~~~~i 69 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKI-ESIKVMRN--SSGKSKGYAFVEFESEEDAEKALEELNGKKI---NGRKI 69 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTE-EEEEEEEE--TTSSEEEEEEEEESSHHHHHHHHHHHTTEEE---TTEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhc-cccccccc--ccccccceEEEEEcCHHHHHHHHHHcCCCEE---CccCc
Confidence 7999999999999999999995555 77777776 5678999999999999999999999999877 99886
No 2
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.95 E-value=1.2e-09 Score=103.13 Aligned_cols=74 Identities=27% Similarity=0.283 Sum_probs=66.3
Q ss_pred Hhcc-cEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCC--CCCceEEEEEechHHHHHHHHhhccceeeecC
Q 017670 200 HEHG-TLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFAS--PYFGQSFVIFKTREVAELVVTKLEEGCLLLSN 276 (368)
Q Consensus 200 ~E~G-tlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~--p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~ 276 (368)
.+.| +.|+|.||+++|+++||++||.+-+..+..+ +||+- +..|.|.|+|.++++|+.||.+||++.| |
T Consensus 79 ~~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~-----vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~l---d 150 (243)
T KOG0533|consen 79 NETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVA-----VHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVAL---D 150 (243)
T ss_pred cCCCcceeeeecCCcCcchHHHHHHHHHhccceEEe-----eccCCCCCCCccceeeecchHhHHHHHHHhcCccc---C
Confidence 3455 8899999999999999999999988888888 88854 7779999999999999999999999877 9
Q ss_pred Cceee
Q 017670 277 GRPLL 281 (368)
Q Consensus 277 GRPL~ 281 (368)
|+||-
T Consensus 151 G~~mk 155 (243)
T KOG0533|consen 151 GRPMK 155 (243)
T ss_pred Cceee
Confidence 99964
No 3
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=98.68 E-value=6.6e-08 Score=83.32 Aligned_cols=88 Identities=17% Similarity=0.092 Sum_probs=70.4
Q ss_pred HHHhcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCC
Q 017670 198 VAHEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNG 277 (368)
Q Consensus 198 ~A~E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~G 277 (368)
.+-+.+|.|||.||++.+|.+||+++|.+.+. -...++ +....+..+-|.|||.|.+.++|+.||..||...| +|
T Consensus 29 ~~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~-I~~v~i-~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i---~G 103 (144)
T PLN03134 29 SLRLMSTKLFIGGLSWGTDDASLRDAFAHFGD-VVDAKV-IVDRETGRSRGFGFVNFNDEGAATAAISEMDGKEL---NG 103 (144)
T ss_pred cccCCCCEEEEeCCCCCCCHHHHHHHHhcCCC-eEEEEE-EecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEE---CC
Confidence 34577899999999999999999999988553 333332 33334457789999999999999999999998877 99
Q ss_pred ceeeeccCCCCCC
Q 017670 278 RPLLGSIGTPCFT 290 (368)
Q Consensus 278 RPL~~S~g~~~~p 290 (368)
|+|.........+
T Consensus 104 r~l~V~~a~~~~~ 116 (144)
T PLN03134 104 RHIRVNPANDRPS 116 (144)
T ss_pred EEEEEEeCCcCCC
Confidence 9999887765444
No 4
>smart00362 RRM_2 RNA recognition motif.
Probab=98.47 E-value=8.8e-07 Score=60.97 Aligned_cols=70 Identities=29% Similarity=0.312 Sum_probs=57.1
Q ss_pred EEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCceeee
Q 017670 206 VVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLLG 282 (368)
Q Consensus 206 V~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL~~ 282 (368)
|+|.||.+.++.+||++++...+... ..+++... ..+.|.|||-|.+.++|..|+..+++.-+ +|+++..
T Consensus 2 v~i~~l~~~~~~~~l~~~~~~~g~v~-~~~~~~~~---~~~~~~~~v~f~~~~~a~~a~~~~~~~~~---~~~~i~v 71 (72)
T smart00362 2 LFVGNLPPDVTEEDLKELFSKFGPIE-SVKIPKDT---GKSKGFAFVEFESEEDAEKAIEALNGTKL---GGRPLRV 71 (72)
T ss_pred EEEcCCCCcCCHHHHHHHHHhcCCEE-EEEEecCC---CCCCceEEEEeCCHHHHHHHHHHhCCcEE---CCEEEee
Confidence 79999999999999999998766443 34444333 56789999999999999999999998655 8888763
No 5
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=98.36 E-value=2.4e-06 Score=59.09 Aligned_cols=73 Identities=26% Similarity=0.271 Sum_probs=58.9
Q ss_pred EEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCceeeec
Q 017670 205 LVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLLGS 283 (368)
Q Consensus 205 lV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL~~S 283 (368)
.|+|.||.+..+.+||.+++...+ .-+...|...... .+.|.|+|-|.+.++|..|+..++..-+ +|+++..+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g-~i~~~~~~~~~~~--~~~~~~~v~f~s~~~a~~a~~~~~~~~~---~~~~~~v~ 73 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFG-KVESVRIVRDKDT--KSKGFAFVEFEDEEDAEKALEALNGKEL---GGRPLRVE 73 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcC-CEEEEEEeeCCCC--CcceEEEEEECCHHHHHHHHHHhCCCeE---CCeEEEEe
Confidence 379999999999999999998864 3455555543332 5689999999999999999999999876 88888643
No 6
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=98.36 E-value=1.5e-06 Score=84.84 Aligned_cols=109 Identities=15% Similarity=0.149 Sum_probs=80.5
Q ss_pred HhcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCce
Q 017670 200 HEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRP 279 (368)
Q Consensus 200 ~E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRP 279 (368)
...+|.|||.||.+.+|.+||+++|...+. -..++++. ...+..+-|.|||-|.+.++|+.||..||...| .|||
T Consensus 104 ~~~~~~LfVgnLp~~~te~~L~~lF~~~G~-V~~v~i~~-d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l---~gr~ 178 (346)
T TIGR01659 104 NNSGTNLIVNYLPQDMTDRELYALFRTIGP-INTCRIMR-DYKTGYSFGYAFVDFGSEADSQRAIKNLNGITV---RNKR 178 (346)
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCC-EEEEEEEe-cCCCCccCcEEEEEEccHHHHHHHHHHcCCCcc---CCce
Confidence 346899999999999999999999998765 45555543 223456779999999999999999999999877 8999
Q ss_pred eeeccCCCCCC--CCCCccccceehhhHHHHHHHHHHhhh
Q 017670 280 LLGSIGTPCFT--GKQSKFVGHLALDKLKFQMQREMREAV 317 (368)
Q Consensus 280 L~~S~g~~~~p--~k~s~f~GHl~i~k~r~q~qrEmr~AV 317 (368)
|..+...+... ....-|+|.|.-+- ..+++++..
T Consensus 179 i~V~~a~p~~~~~~~~~lfV~nLp~~v----tee~L~~~F 214 (346)
T TIGR01659 179 LKVSYARPGGESIKDTNLYVTNLPRTI----TDDQLDTIF 214 (346)
T ss_pred eeeecccccccccccceeEEeCCCCcc----cHHHHHHHH
Confidence 99876654322 22335666665442 335566544
No 7
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=98.29 E-value=2e-06 Score=79.75 Aligned_cols=95 Identities=20% Similarity=0.190 Sum_probs=72.0
Q ss_pred cccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCceee
Q 017670 202 HGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLL 281 (368)
Q Consensus 202 ~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL~ 281 (368)
.-+.|||.||.+.+|.+||+++|...+.. ..++++. ...+..+-|.|||-|.+.++|+.||..||...| .||+|.
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i-~~v~i~~-d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l---~g~~i~ 76 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEI-ESCKLVR-DKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRL---QNKTIK 76 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCE-EEEEEEE-cCCCCccceEEEEEECcHHHHHHHHhhcccEEE---CCeeEE
Confidence 45789999999999999999999997754 4444432 233467889999999999999999999999877 899998
Q ss_pred eccCCCCCC--CCCCcccccee
Q 017670 282 GSIGTPCFT--GKQSKFVGHLA 301 (368)
Q Consensus 282 ~S~g~~~~p--~k~s~f~GHl~ 301 (368)
-..+.+... ....-|+|+|.
T Consensus 77 v~~a~~~~~~~~~~~l~v~~l~ 98 (352)
T TIGR01661 77 VSYARPSSDSIKGANLYVSGLP 98 (352)
T ss_pred EEeecccccccccceEEECCcc
Confidence 766654432 12334445443
No 8
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=98.25 E-value=2.7e-06 Score=85.13 Aligned_cols=81 Identities=27% Similarity=0.347 Sum_probs=67.8
Q ss_pred HhcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCce
Q 017670 200 HEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRP 279 (368)
Q Consensus 200 ~E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRP 279 (368)
...++.|||.||++.+|.+||.++|..- +.-+.++++.. ......|.|||.|.+.++|..||..||...| +|||
T Consensus 282 ~~~~~~l~V~nl~~~~~~~~L~~~F~~~-G~i~~~~i~~d--~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~---~gk~ 355 (562)
T TIGR01628 282 KAQGVNLYVKNLDDTVTDEKLRELFSEC-GEITSAKVMLD--EKGVSRGFGFVCFSNPEEANRAVTEMHGRML---GGKP 355 (562)
T ss_pred ccCCCEEEEeCCCCccCHHHHHHHHHhc-CCeEEEEEEEC--CCCCcCCeEEEEeCCHHHHHHHHHHhcCCee---CCce
Confidence 3468899999999999999999999874 45566666654 3457789999999999999999999999766 9999
Q ss_pred eeeccCC
Q 017670 280 LLGSIGT 286 (368)
Q Consensus 280 L~~S~g~ 286 (368)
|+...+.
T Consensus 356 l~V~~a~ 362 (562)
T TIGR01628 356 LYVALAQ 362 (562)
T ss_pred eEEEecc
Confidence 9876654
No 9
>smart00360 RRM RNA recognition motif.
Probab=98.23 E-value=4.4e-06 Score=57.10 Aligned_cols=70 Identities=29% Similarity=0.316 Sum_probs=54.4
Q ss_pred EecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCceeee
Q 017670 208 LENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLLG 282 (368)
Q Consensus 208 LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL~~ 282 (368)
|.||++.++.+||.++|...+... ..++++ ......+.|.|||.|.+.++|..|+..|+..-+ +|++|..
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~-~~~i~~-~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~---~~~~~~v 70 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIE-SVRLVR-DKDTGKSKGFAFVEFESEEDAEKALEALNGKEL---DGRPLKV 70 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEe-EEEEEe-CCCCCCCCceEEEEeCCHHHHHHHHHHcCCCee---CCcEEEe
Confidence 579999999999999998766442 233333 223457789999999999999999999996655 8888753
No 10
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=98.22 E-value=4.5e-06 Score=77.43 Aligned_cols=82 Identities=23% Similarity=0.176 Sum_probs=67.5
Q ss_pred hcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCcee
Q 017670 201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 280 (368)
Q Consensus 201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL 280 (368)
..|..|+|.||.+..+.++|.++|...+. --.++++. ...+...-|.|||-|.+.++|..||..||+..| +||+|
T Consensus 267 ~~~~~lfV~NL~~~~~e~~L~~~F~~fG~-v~~v~i~~-d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~---~gr~i 341 (352)
T TIGR01661 267 GAGYCIFVYNLSPDTDETVLWQLFGPFGA-VQNVKIIR-DLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTL---GNRVL 341 (352)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhCCC-eEEEEEeE-cCCCCCccceEEEEECCHHHHHHHHHHhCCCEE---CCeEE
Confidence 44668999999999999999999987554 44466543 344567889999999999999999999999888 99999
Q ss_pred eeccCCC
Q 017670 281 LGSIGTP 287 (368)
Q Consensus 281 ~~S~g~~ 287 (368)
.-++.+.
T Consensus 342 ~V~~~~~ 348 (352)
T TIGR01661 342 QVSFKTN 348 (352)
T ss_pred EEEEccC
Confidence 8776654
No 11
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=98.16 E-value=2.5e-06 Score=62.27 Aligned_cols=69 Identities=25% Similarity=0.275 Sum_probs=52.8
Q ss_pred EEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCcee
Q 017670 206 VVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 280 (368)
Q Consensus 206 V~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL 280 (368)
|||.||.++.|.+||.+++...+.- -..+|+.... ....|.|||-|.+.+.|..|+..++.-.+ +||.|
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v-~~v~~~~~~~--~~~~~~a~v~f~~~~~a~~al~~~~~~~~---~g~~l 69 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPV-EKVRLIKNKD--GQSRGFAFVEFSSEEDAKRALELLNGKEI---DGRKL 69 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBE-EEEEEEESTT--SSEEEEEEEEESSHHHHHHHHHHHTTEEE---TTEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCc-ceEEEEeeec--cccCCEEEEEeCCHHHHHHHHHHCCCcEE---CCEEc
Confidence 7999999999999999998876532 2334443222 45689999999999999999999986666 89876
No 12
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=98.11 E-value=8.4e-06 Score=79.66 Aligned_cols=82 Identities=16% Similarity=0.142 Sum_probs=63.1
Q ss_pred HHHhcccEEEEecCCCCCCchHHHHHHHHHhhccceec-----ccCCcccCCCCCceEEEEEechHHHHHHHHhhcccee
Q 017670 198 VAHEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAK-----MIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCL 272 (368)
Q Consensus 198 ~A~E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~Ak-----mI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL 272 (368)
.+..+.+.|||.||.+.+|.+||.++|.+.|....... .|..+.+ ...-|.|||.|.+.+.|..|| .||+..|
T Consensus 170 ~~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~-~~~kg~afVeF~~~e~A~~Al-~l~g~~~ 247 (509)
T TIGR01642 170 QATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI-NKEKNFAFLEFRTVEEATFAM-ALDSIIY 247 (509)
T ss_pred cCCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE-CCCCCEEEEEeCCHHHHhhhh-cCCCeEe
Confidence 45667789999999999999999999999766544322 2222222 356789999999999999999 5888655
Q ss_pred eecCCceeeecc
Q 017670 273 LLSNGRPLLGSI 284 (368)
Q Consensus 273 ~ls~GRPL~~S~ 284 (368)
+|+||.-..
T Consensus 248 ---~g~~l~v~r 256 (509)
T TIGR01642 248 ---SNVFLKIRR 256 (509)
T ss_pred ---eCceeEecC
Confidence 899987643
No 13
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=98.10 E-value=9e-06 Score=79.44 Aligned_cols=82 Identities=18% Similarity=0.201 Sum_probs=61.7
Q ss_pred cccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCceee
Q 017670 202 HGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLL 281 (368)
Q Consensus 202 ~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL~ 281 (368)
..|.|||.||++.+|.+||+++|...+.. ..++++ +...+..+-|.|||-|.++++|+.||..||+..|.- .++||.
T Consensus 192 ~~~~lfV~nLp~~vtee~L~~~F~~fG~V-~~v~i~-~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g-~~~~l~ 268 (346)
T TIGR01659 192 KDTNLYVTNLPRTITDDQLDTIFGKYGQI-VQKNIL-RDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEG-GSQPLT 268 (346)
T ss_pred ccceeEEeCCCCcccHHHHHHHHHhcCCE-EEEEEe-ecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCC-CceeEE
Confidence 35789999999999999999999876643 344443 333344556899999999999999999999987611 236887
Q ss_pred eccCC
Q 017670 282 GSIGT 286 (368)
Q Consensus 282 ~S~g~ 286 (368)
...+.
T Consensus 269 V~~a~ 273 (346)
T TIGR01659 269 VRLAE 273 (346)
T ss_pred EEECC
Confidence 65443
No 14
>PLN03120 nucleic acid binding protein; Provisional
Probab=98.03 E-value=1.6e-05 Score=76.39 Aligned_cols=76 Identities=13% Similarity=0.055 Sum_probs=62.5
Q ss_pred cccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCceee
Q 017670 202 HGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLL 281 (368)
Q Consensus 202 ~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL~ 281 (368)
.++.||+.||++..|..||+|+|...+. -....|+ .+..+.|.|||.|.+.++|+.|| .||+.-| +||+|.
T Consensus 3 ~~rtVfVgNLs~~tTE~dLrefFS~~G~-I~~V~I~----~d~~~~GfAFVtF~d~eaAe~Al-lLnG~~l---~gr~V~ 73 (260)
T PLN03120 3 QVRTVKVSNVSLKATERDIKEFFSFSGD-IEYVEMQ----SENERSQIAYVTFKDPQGAETAL-LLSGATI---VDQSVT 73 (260)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCC-eEEEEEe----ecCCCCCEEEEEeCcHHHHHHHH-HhcCCee---CCceEE
Confidence 3689999999999999999999988764 4445443 23346799999999999999999 4988877 899998
Q ss_pred eccCC
Q 017670 282 GSIGT 286 (368)
Q Consensus 282 ~S~g~ 286 (368)
-+...
T Consensus 74 Vt~a~ 78 (260)
T PLN03120 74 ITPAE 78 (260)
T ss_pred EEecc
Confidence 77764
No 15
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=98.00 E-value=1.8e-05 Score=77.33 Aligned_cols=82 Identities=12% Similarity=0.080 Sum_probs=66.3
Q ss_pred HhcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCce
Q 017670 200 HEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRP 279 (368)
Q Consensus 200 ~E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRP 279 (368)
.+.++.|||.||.+.+|.++|.+||...+.. ..++++ ....+..+.|.|||.|.+.++|+.||..||+..| +|++
T Consensus 292 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i-~~~~~~-~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~---~~~~ 366 (509)
T TIGR01642 292 LDSKDRIYIGNLPLYLGEDQIKELLESFGDL-KAFNLI-KDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDT---GDNK 366 (509)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCe-eEEEEE-ecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEE---CCeE
Confidence 4567899999999999999999999886543 333333 2233467889999999999999999999999988 9999
Q ss_pred eeeccCC
Q 017670 280 LLGSIGT 286 (368)
Q Consensus 280 L~~S~g~ 286 (368)
|......
T Consensus 367 l~v~~a~ 373 (509)
T TIGR01642 367 LHVQRAC 373 (509)
T ss_pred EEEEECc
Confidence 9876653
No 16
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=98.00 E-value=1.5e-05 Score=77.14 Aligned_cols=79 Identities=16% Similarity=0.088 Sum_probs=64.0
Q ss_pred ccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCceeee
Q 017670 203 GTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLLG 282 (368)
Q Consensus 203 GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL~~ 282 (368)
.+.|||.||.+.+|.+||.++|...+.. ...++ .+......+.|.|||.|.+.++|..||..||+..| +||||..
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i-~~v~~-~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i---~g~~i~v 260 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDI-EDVQL-HRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFEL---AGRPIKV 260 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCe-EEEEE-EEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEE---CCEEEEE
Confidence 4789999999999999999999876543 23332 23334446779999999999999999999999666 8999998
Q ss_pred ccCC
Q 017670 283 SIGT 286 (368)
Q Consensus 283 S~g~ 286 (368)
+.+.
T Consensus 261 ~~a~ 264 (457)
T TIGR01622 261 GYAQ 264 (457)
T ss_pred EEcc
Confidence 8865
No 17
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=97.98 E-value=1.5e-05 Score=79.84 Aligned_cols=74 Identities=22% Similarity=0.233 Sum_probs=60.8
Q ss_pred EEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCceeeec
Q 017670 205 LVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLLGS 283 (368)
Q Consensus 205 lV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL~~S 283 (368)
-|||.||++.+|.+||.++|...+... .++ |.+...+....|.|||.|.+.++|..||..+|...| +|||+.-.
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~-~v~-v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i---~gk~i~i~ 75 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVL-SVR-VCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRL---GGKPIRIM 75 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEE-EEE-EEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEE---CCeeEEee
Confidence 589999999999999999999987532 222 333344457789999999999999999999999988 89997753
No 18
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=97.93 E-value=2.7e-05 Score=75.34 Aligned_cols=79 Identities=16% Similarity=0.104 Sum_probs=64.0
Q ss_pred HHHhcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCC
Q 017670 198 VAHEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNG 277 (368)
Q Consensus 198 ~A~E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~G 277 (368)
.+....+.|||.||.+.+|..||.++|...+ .--.+++|- ...+..+-|.|||-|.+.+.|..||. |++..| .|
T Consensus 84 ~~~~~~~~l~V~nlp~~~~~~~l~~~F~~~G-~v~~v~i~~-d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~---~g 157 (457)
T TIGR01622 84 EAERDDRTVFVLQLALKARERDLYEFFSKVG-KVRDVQCIK-DRNSRRSKGVAYVEFYDVESVIKALA-LTGQML---LG 157 (457)
T ss_pred ccccCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeeEEEEee-cCCCCCcceEEEEEECCHHHHHHHHH-hCCCEE---CC
Confidence 3456678999999999999999999999977 334454543 33446778999999999999999996 888776 89
Q ss_pred ceeee
Q 017670 278 RPLLG 282 (368)
Q Consensus 278 RPL~~ 282 (368)
+||..
T Consensus 158 ~~i~v 162 (457)
T TIGR01622 158 RPIIV 162 (457)
T ss_pred eeeEE
Confidence 99874
No 19
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=97.91 E-value=2.7e-05 Score=81.34 Aligned_cols=78 Identities=21% Similarity=0.197 Sum_probs=64.4
Q ss_pred hcccEEEEecCCCCCCchHHHHHHHHHh-hccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCce
Q 017670 201 EHGTLVVLENLDPSYTSTVVEDLVWHAF-KENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRP 279 (368)
Q Consensus 201 E~GtlV~LqNLDps~ts~dVedLi~~a~-ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRP 279 (368)
...+.|||.||++++|.++|+++|...- .+-..++++ .|.|||.|.++++|+.||..||...| +||+
T Consensus 231 ~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~---------rgfAFVeF~s~e~A~kAi~~lnG~~i---~Gr~ 298 (578)
T TIGR01648 231 AKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI---------RDYAFVHFEDREDAVKAMDELNGKEL---EGSE 298 (578)
T ss_pred ccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee---------cCeEEEEeCCHHHHHHHHHHhCCCEE---CCEE
Confidence 4568899999999999999999998750 333344332 46899999999999999999999988 9999
Q ss_pred eeeccCCCCCC
Q 017670 280 LLGSIGTPCFT 290 (368)
Q Consensus 280 L~~S~g~~~~p 290 (368)
|..+.+.|...
T Consensus 299 I~V~~Akp~~~ 309 (578)
T TIGR01648 299 IEVTLAKPVDK 309 (578)
T ss_pred EEEEEccCCCc
Confidence 99998877543
No 20
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=97.88 E-value=6e-05 Score=62.27 Aligned_cols=80 Identities=24% Similarity=0.229 Sum_probs=66.5
Q ss_pred ccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCceeee
Q 017670 203 GTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLLG 282 (368)
Q Consensus 203 GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL~~ 282 (368)
...|||.||.+.+|.+||.++|.+.+.-.-.- |..........|.|||.|.+.+.|..|+..+++.-| .||+|.-
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~--~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~---~~~~~~v 189 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVR--LVRDRETGKSRGFAFVEFESEESAEKAIEELNGKEL---EGRPLRV 189 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEE--eeeccccCccCceEEEEecCHHHHHHHHHHcCCCeE---CCceeEe
Confidence 68999999999999999999999988762222 222224468899999999999999999999998888 9999997
Q ss_pred ccCCC
Q 017670 283 SIGTP 287 (368)
Q Consensus 283 S~g~~ 287 (368)
....+
T Consensus 190 ~~~~~ 194 (306)
T COG0724 190 QKAQP 194 (306)
T ss_pred ecccc
Confidence 77654
No 21
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=97.86 E-value=5.2e-05 Score=79.31 Aligned_cols=107 Identities=21% Similarity=0.208 Sum_probs=79.4
Q ss_pred HhcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCce
Q 017670 200 HEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRP 279 (368)
Q Consensus 200 ~E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRP 279 (368)
-+.|+.|+|.||.+.++.+||.++|...+. -..++++-. ++..+-|.|||.|.+.++|+.||..||+..| .+||.
T Consensus 55 p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~-I~~vrl~~D--~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i--~~Gr~ 129 (578)
T TIGR01648 55 PGRGCEVFVGKIPRDLYEDELVPLFEKAGP-IYELRLMMD--FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEI--RPGRL 129 (578)
T ss_pred CCCCCEEEeCCCCCCCCHHHHHHHHHhhCC-EEEEEEEEC--CCCCccceEEEEeCCHHHHHHHHHHcCCCee--cCCcc
Confidence 457899999999999999999999998764 445555544 6788999999999999999999999998866 46887
Q ss_pred eeeccCCCCCCCCCCccccceehhhHHHHHHHHHHh
Q 017670 280 LLGSIGTPCFTGKQSKFVGHLALDKLKFQMQREMRE 315 (368)
Q Consensus 280 L~~S~g~~~~p~k~s~f~GHl~i~k~r~q~qrEmr~ 315 (368)
|...... ..+.-|+|-|.-+.-+-+..+++.+
T Consensus 130 l~V~~S~----~~~rLFVgNLP~~~TeeeL~eeFsk 161 (578)
T TIGR01648 130 LGVCISV----DNCRLFVGGIPKNKKREEILEEFSK 161 (578)
T ss_pred ccccccc----cCceeEeecCCcchhhHHHHHHhhc
Confidence 6433221 2355677766555433344455554
No 22
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=97.81 E-value=5e-05 Score=75.89 Aligned_cols=76 Identities=16% Similarity=0.149 Sum_probs=63.6
Q ss_pred HhcccEEEEecCCC-CCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCc
Q 017670 200 HEHGTLVVLENLDP-SYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGR 278 (368)
Q Consensus 200 ~E~GtlV~LqNLDp-s~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GR 278 (368)
...+++|||.||++ .+|.++|.+||..-+... .++++.. ..|.|||-|.+.++|+.||..||+..| +||
T Consensus 272 ~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~-~vki~~~------~~g~afV~f~~~~~A~~Ai~~lng~~l---~g~ 341 (481)
T TIGR01649 272 GGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVE-RVKFMKN------KKETALIEMADPYQAQLALTHLNGVKL---FGK 341 (481)
T ss_pred CCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeE-EEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEE---CCc
Confidence 34789999999998 699999999999866544 4444432 249999999999999999999999988 999
Q ss_pred eeeeccC
Q 017670 279 PLLGSIG 285 (368)
Q Consensus 279 PL~~S~g 285 (368)
+|..+..
T Consensus 342 ~l~v~~s 348 (481)
T TIGR01649 342 PLRVCPS 348 (481)
T ss_pred eEEEEEc
Confidence 9988765
No 23
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=97.77 E-value=5.2e-05 Score=79.87 Aligned_cols=81 Identities=16% Similarity=0.095 Sum_probs=65.9
Q ss_pred HHHhcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCC
Q 017670 198 VAHEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNG 277 (368)
Q Consensus 198 ~A~E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~G 277 (368)
.|+...+.|||.||.+..|.++|+++|...+... ..+| ........+-|.|||-|.+.++|+.||..||+..| +|
T Consensus 102 ~a~~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~-sV~I-~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i---~G 176 (612)
T TIGR01645 102 QALAIMCRVYVGSISFELREDTIRRAFDPFGPIK-SINM-SWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQML---GG 176 (612)
T ss_pred hhhcCCCEEEEcCCCCCCCHHHHHHHHHccCCEE-EEEE-eecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEE---ec
Confidence 4566778999999999999999999999865443 3333 33445567899999999999999999999998766 99
Q ss_pred ceeeec
Q 017670 278 RPLLGS 283 (368)
Q Consensus 278 RPL~~S 283 (368)
|+|.-.
T Consensus 177 R~IkV~ 182 (612)
T TIGR01645 177 RNIKVG 182 (612)
T ss_pred ceeeec
Confidence 998654
No 24
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=97.69 E-value=9.9e-05 Score=77.83 Aligned_cols=83 Identities=11% Similarity=0.118 Sum_probs=69.6
Q ss_pred HhcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCce
Q 017670 200 HEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRP 279 (368)
Q Consensus 200 ~E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRP 279 (368)
....+.||+.||++.++.+||.++|.. |+.-..++++.... ...+-|.|||.|.+.++|..||..||.--| +||+
T Consensus 201 ~~~~~rLfVgnLp~~vteedLk~lFs~-FG~I~svrl~~D~~-tgksKGfGFVeFe~~e~A~kAI~amNg~el---gGr~ 275 (612)
T TIGR01645 201 AKKFNRIYVASVHPDLSETDIKSVFEA-FGEIVKCQLARAPT-GRGHKGYGFIEYNNLQSQSEAIASMNLFDL---GGQY 275 (612)
T ss_pred ccccceEEeecCCCCCCHHHHHHHHhh-cCCeeEEEEEecCC-CCCcCCeEEEEECCHHHHHHHHHHhCCCee---CCeE
Confidence 345678999999999999999999985 66777777664433 367889999999999999999999998877 9999
Q ss_pred eeeccCCC
Q 017670 280 LLGSIGTP 287 (368)
Q Consensus 280 L~~S~g~~ 287 (368)
|--.+...
T Consensus 276 LrV~kAi~ 283 (612)
T TIGR01645 276 LRVGKCVT 283 (612)
T ss_pred EEEEecCC
Confidence 98776653
No 25
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=97.66 E-value=0.00015 Score=65.15 Aligned_cols=97 Identities=21% Similarity=0.142 Sum_probs=78.4
Q ss_pred CCccccccccCCChHHHHHHHHhcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechH
Q 017670 179 PSLDRSKWFKELPWEERIRVAHEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTRE 258 (368)
Q Consensus 179 P~~d~skWfK~lPWEe~lr~A~E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~tre 258 (368)
+++=+-+.|++ =.+.--.|..+.+.||+.||-...|.+.|=|||..++..+... .-..-|...++|-|||+|-+++
T Consensus 14 ~s~Yr~~~f~g--t~~e~~~a~r~S~tvyVgNlSfyttEEqiyELFs~cG~irrii--MGLdr~kktpCGFCFVeyy~~~ 89 (153)
T KOG0121|consen 14 LSAYRDRRFRG--TDEEQLEALRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRII--MGLDRFKKTPCGFCFVEYYSRD 89 (153)
T ss_pred hhHHHHHHhcC--chHHHHHHHhhcceEEEeeeeeeecHHHHHHHHHhccchheeE--eccccCCcCccceEEEEEecch
Confidence 44445566764 2334445778889999999999999999999999988877654 2334566799999999999999
Q ss_pred HHHHHHHhhccceeeecCCceeee
Q 017670 259 VAELVVTKLEEGCLLLSNGRPLLG 282 (368)
Q Consensus 259 aAdsAi~Kln~~cL~ls~GRPL~~ 282 (368)
+|+.||+-||..-| |.||+-.
T Consensus 90 dA~~AlryisgtrL---ddr~ir~ 110 (153)
T KOG0121|consen 90 DAEDALRYISGTRL---DDRPIRI 110 (153)
T ss_pred hHHHHHHHhccCcc---cccceee
Confidence 99999999999999 9999874
No 26
>PLN03121 nucleic acid binding protein; Provisional
Probab=97.61 E-value=0.00017 Score=69.03 Aligned_cols=76 Identities=21% Similarity=0.171 Sum_probs=61.4
Q ss_pred hcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCcee
Q 017670 201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 280 (368)
Q Consensus 201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL 280 (368)
..|..|++.||.|..|..||+|+|...|+. -..+||.. ....|-|||.|...++|+.|| .||+.-| .|+|+
T Consensus 3 ~~g~TV~V~NLS~~tTE~dLrefFS~~G~I-~~V~I~~D----~et~gfAfVtF~d~~aaetAl-lLnGa~l---~d~~I 73 (243)
T PLN03121 3 PGGYTAEVTNLSPKATEKDVYDFFSHCGAI-EHVEIIRS----GEYACTAYVTFKDAYALETAV-LLSGATI---VDQRV 73 (243)
T ss_pred CCceEEEEecCCCCCCHHHHHHHHHhcCCe-EEEEEecC----CCcceEEEEEECCHHHHHHHH-hcCCCee---CCceE
Confidence 368999999999999999999999997663 23334433 445589999999999999999 7888877 78887
Q ss_pred eeccC
Q 017670 281 LGSIG 285 (368)
Q Consensus 281 ~~S~g 285 (368)
.-+..
T Consensus 74 ~It~~ 78 (243)
T PLN03121 74 CITRW 78 (243)
T ss_pred EEEeC
Confidence 76554
No 27
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=97.51 E-value=0.00016 Score=67.58 Aligned_cols=97 Identities=23% Similarity=0.277 Sum_probs=75.1
Q ss_pred hcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCcee
Q 017670 201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 280 (368)
Q Consensus 201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL 280 (368)
.++..||+.|||+-++.+-+=|||-||+- +---.||+.-+.+-|-|.|||-|.+.++||=||+=||-+-| .|||+
T Consensus 7 nqd~tiyvgnld~kvs~~~l~EL~iqagp--Vv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkL---YgrpI 81 (203)
T KOG0131|consen 7 NQDATLYVGNLDEKVSEELLYELFIQAGP--VVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKL---YGRPI 81 (203)
T ss_pred CCCceEEEecCCHHHHHHHHHHHHHhcCc--eeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHh---cCcee
Confidence 47789999999999987766666666653 23346899999889999999999999999999999997777 99999
Q ss_pred eeccCC---CCCCCCCCccccceeh
Q 017670 281 LGSIGT---PCFTGKQSKFVGHLAL 302 (368)
Q Consensus 281 ~~S~g~---~~~p~k~s~f~GHl~i 302 (368)
.-++.. -..+..-.-|+|-|.-
T Consensus 82 rv~kas~~~~nl~vganlfvgNLd~ 106 (203)
T KOG0131|consen 82 RVNKASAHQKNLDVGANLFVGNLDP 106 (203)
T ss_pred EEEecccccccccccccccccccCc
Confidence 877776 2222223445665543
No 28
>smart00361 RRM_1 RNA recognition motif.
Probab=97.50 E-value=0.00031 Score=52.96 Aligned_cols=63 Identities=19% Similarity=0.265 Sum_probs=45.4
Q ss_pred hHHHHHHHH---Hhhccceec--ccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCceeeec
Q 017670 218 TVVEDLVWH---AFKENCSAK--MIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLLGS 283 (368)
Q Consensus 218 ~dVedLi~~---a~ke~c~Ak--mI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL~~S 283 (368)
+||+++|.+ .|+.-..+. ++++.......-|.|||-|.+.++|..|+..||+.-+ +||+|.++
T Consensus 3 ~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~---~gr~l~~~ 70 (70)
T smart00361 3 EDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYF---DGRTVKAE 70 (70)
T ss_pred hhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEE---CCEEEEeC
Confidence 566777762 222222232 4455443355679999999999999999999999988 99999875
No 29
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.43 E-value=0.00035 Score=61.01 Aligned_cols=74 Identities=22% Similarity=0.185 Sum_probs=58.2
Q ss_pred HhcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCce
Q 017670 200 HEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRP 279 (368)
Q Consensus 200 ~E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRP 279 (368)
-|..+++||.||-...|++|+=|||-.-+-.. -| ++--..---|.|||+|-.-.+|..|+.+|+.--+ +||+
T Consensus 15 pevnriLyirNLp~~ITseemydlFGkyg~Ir----QI-RiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~---~~ry 86 (124)
T KOG0114|consen 15 PEVNRILYIRNLPFKITSEEMYDLFGKYGTIR----QI-RIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNV---DNRY 86 (124)
T ss_pred hhhheeEEEecCCccccHHHHHHHhhcccceE----EE-EecCccCcCceEEEEehHhhhHHHHHHHhccccc---CCce
Confidence 46789999999999999999999987633221 00 0112224469999999999999999999998776 9999
Q ss_pred ee
Q 017670 280 LL 281 (368)
Q Consensus 280 L~ 281 (368)
|+
T Consensus 87 l~ 88 (124)
T KOG0114|consen 87 LV 88 (124)
T ss_pred EE
Confidence 98
No 30
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=97.42 E-value=0.0004 Score=69.55 Aligned_cols=73 Identities=15% Similarity=0.083 Sum_probs=59.3
Q ss_pred hcccEEEEecCCCCCCchHHHHHHHHHhh-ccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCce
Q 017670 201 EHGTLVVLENLDPSYTSTVVEDLVWHAFK-ENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRP 279 (368)
Q Consensus 201 E~GtlV~LqNLDps~ts~dVedLi~~a~k-e~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRP 279 (368)
.-++.|+|.||.+++|.++|++||.+.+. .-+..|+.+.. +-..|.|||-|.+.++|..||..||+.-| +||.
T Consensus 392 ~ps~~L~v~NLp~~~tee~L~~lF~~~G~~~i~~ik~~~~~---~~~~~~gfVeF~~~e~A~~Al~~ln~~~l---~~~~ 465 (481)
T TIGR01649 392 PPSATLHLSNIPLSVSEEDLKELFAENGVHKVKKFKFFPKD---NERSKMGLLEWESVEDAVEALIALNHHQL---NEPN 465 (481)
T ss_pred CCCcEEEEecCCCCCCHHHHHHHHHhcCCccceEEEEecCC---CCcceeEEEEcCCHHHHHHHHHHhcCCcc---CCCC
Confidence 34678999999999999999999999765 34455665432 22478999999999999999999998877 7764
No 31
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.18 E-value=0.001 Score=71.27 Aligned_cols=125 Identities=20% Similarity=0.188 Sum_probs=95.7
Q ss_pred ccEEEEecCCCCCCchHHHHHHHHHhhc-cceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCceee
Q 017670 203 GTLVVLENLDPSYTSTVVEDLVWHAFKE-NCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLL 281 (368)
Q Consensus 203 GtlV~LqNLDps~ts~dVedLi~~a~ke-~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL~ 281 (368)
-|.+|++||...=|..+++++|...+.. .|+-.+-+...---+..|-+||-|.+.+.|..|++.|+...| ||++|.
T Consensus 515 ~t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvl---dGH~l~ 591 (725)
T KOG0110|consen 515 ETKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVL---DGHKLE 591 (725)
T ss_pred chhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCcee---cCceEE
Confidence 3449999999999999999999995443 222211121111124569999999999999999999998877 999999
Q ss_pred eccCC--------CCCCCCCCccccceehhhHHHHHH-HHHHhhhccc----cCCCCCcchhhc
Q 017670 282 GSIGT--------PCFTGKQSKFVGHLALDKLKFQMQ-REMREAVSTS----HCSQPNSLEYDM 332 (368)
Q Consensus 282 ~S~g~--------~~~p~k~s~f~GHl~i~k~r~q~q-rEmr~AVSTS----HCSQPNtiEYdm 332 (368)
+++-. ...|.+.. .+-|-+-|+..|++ ||.|+--++. -|.=|+-|-|.|
T Consensus 592 lk~S~~k~~~~~gK~~~~kk~--~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a 653 (725)
T KOG0110|consen 592 LKISENKPASTVGKKKSKKKK--GTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGA 653 (725)
T ss_pred EEeccCccccccccccccccc--cceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchh
Confidence 88765 33333332 56778889999888 9999999888 588999988888
No 32
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=97.12 E-value=0.00058 Score=63.59 Aligned_cols=75 Identities=28% Similarity=0.162 Sum_probs=59.4
Q ss_pred cccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhcccee-------ee
Q 017670 202 HGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCL-------LL 274 (368)
Q Consensus 202 ~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL-------~l 274 (368)
.+|.||+.||....|.-|||.+|...+.+.- +-+.-.+.|-|||.|...-+|+-|++-||..-| =|
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrs-------vWvArnPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~ 81 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRS-------VWVARNPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVEL 81 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCccee-------EEEeecCCCceEEeccCcccHHHHHhhcCCccccCceEEEEe
Confidence 4799999999999999999999998775433 333346779999999999999999999987543 34
Q ss_pred cCCceeeec
Q 017670 275 SNGRPLLGS 283 (368)
Q Consensus 275 s~GRPL~~S 283 (368)
|.|+|==+-
T Consensus 82 S~G~~r~~r 90 (195)
T KOG0107|consen 82 STGRPRGSR 90 (195)
T ss_pred ecCCccccc
Confidence 556665333
No 33
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=96.97 E-value=0.0016 Score=64.77 Aligned_cols=71 Identities=25% Similarity=0.279 Sum_probs=58.1
Q ss_pred EEEecCCCCCCchHHHHHHHHHhhc-cceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCceeeecc
Q 017670 206 VVLENLDPSYTSTVVEDLVWHAFKE-NCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLLGSI 284 (368)
Q Consensus 206 V~LqNLDps~ts~dVedLi~~a~ke-~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL~~S~ 284 (368)
|+|.||||+.+..++-|+|...++- .|-...=.. ---|. ||-|-+-++|..||..||+.+| +|.+++...
T Consensus 79 ~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~-----g~kg~-FV~f~~e~~a~~ai~~~ng~ll---~~kki~vg~ 149 (369)
T KOG0123|consen 79 VFIKNLDESIDNKSLYDTFSEFGNILSCKVATDEN-----GSKGY-FVQFESEESAKKAIEKLNGMLL---NGKKIYVGL 149 (369)
T ss_pred eeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCC-----Cceee-EEEeCCHHHHHHHHHHhcCccc---CCCeeEEee
Confidence 9999999999999999999987764 444321111 24567 9999999999999999999988 999999754
Q ss_pred C
Q 017670 285 G 285 (368)
Q Consensus 285 g 285 (368)
.
T Consensus 150 ~ 150 (369)
T KOG0123|consen 150 F 150 (369)
T ss_pred c
Confidence 4
No 34
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=96.96 E-value=0.0033 Score=65.07 Aligned_cols=107 Identities=20% Similarity=0.210 Sum_probs=85.8
Q ss_pred hcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCcee
Q 017670 201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 280 (368)
Q Consensus 201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL 280 (368)
..|+=|+|.-+---+..+|+-.||-.+++.- +.| +=..+||.-|-|.|||.|.++++|..||+-||+-=+ ..||+|
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~-elR-LMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Ei--r~GK~i 156 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIY-ELR-LMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEI--RPGKLL 156 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhcccee-eEE-EeecccCCCCcceEEEEeecHHHHHHHHHHhhCccc--cCCCEe
Confidence 8999999999999999999999999887643 333 223678889999999999999999999999999966 788888
Q ss_pred eeccCCCCCCCCCCccccceehhhHHHHHHHHHHh
Q 017670 281 LGSIGTPCFTGKQSKFVGHLALDKLKFQMQREMRE 315 (368)
Q Consensus 281 ~~S~g~~~~p~k~s~f~GHl~i~k~r~q~qrEmr~ 315 (368)
-|+. --.++.-|+|-+-=++.|..-.+||++
T Consensus 157 gvc~----Svan~RLFiG~IPK~k~keeIlee~~k 187 (506)
T KOG0117|consen 157 GVCV----SVANCRLFIGNIPKTKKKEEILEEMKK 187 (506)
T ss_pred EEEE----eeecceeEeccCCccccHHHHHHHHHh
Confidence 6553 335688899987766655444455554
No 35
>PLN03213 repressor of silencing 3; Provisional
Probab=96.81 E-value=0.0041 Score=65.55 Aligned_cols=79 Identities=9% Similarity=0.029 Sum_probs=64.3
Q ss_pred hcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEech--HHHHHHHHhhccceeeecCCc
Q 017670 201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTR--EVAELVVTKLEEGCLLLSNGR 278 (368)
Q Consensus 201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~tr--eaAdsAi~Kln~~cL~ls~GR 278 (368)
..|..||+.||.+.+|.+||+.+|...|.-.. +.+| +.+. -|-|||-|.+- +.+..||..||+.-+ .||
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkd-VEIp-RETG----RGFAFVEMssdddaEeeKAISaLNGAEW---KGR 78 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDA-VEFV-RTKG----RSFAYIDFSPSSTNSLTKLFSTYNGCVW---KGG 78 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeE-EEEe-cccC----CceEEEEecCCcHHHHHHHHHHhcCCee---cCc
Confidence 45789999999999999999999998766443 4444 4443 68999999987 679999999999988 899
Q ss_pred eeeeccCCCC
Q 017670 279 PLLGSIGTPC 288 (368)
Q Consensus 279 PL~~S~g~~~ 288 (368)
.|.--++.|.
T Consensus 79 ~LKVNKAKP~ 88 (759)
T PLN03213 79 RLRLEKAKEH 88 (759)
T ss_pred eeEEeeccHH
Confidence 9986666543
No 36
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=96.74 E-value=0.0018 Score=46.23 Aligned_cols=34 Identities=38% Similarity=0.483 Sum_probs=31.4
Q ss_pred CceEEEEEechHHHHHHHHhhccceeeecCCceeeec
Q 017670 247 FGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLLGS 283 (368)
Q Consensus 247 sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL~~S 283 (368)
.|.|||-|.+.++|..|+..||+..+ +||||..+
T Consensus 21 ~~~a~V~f~~~~~A~~a~~~l~~~~~---~g~~l~V~ 54 (56)
T PF13893_consen 21 RGFAFVEFASVEDAQKAIEQLNGRQF---NGRPLKVS 54 (56)
T ss_dssp TTEEEEEESSHHHHHHHHHHHTTSEE---TTEEEEEE
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCEE---CCcEEEEE
Confidence 59999999999999999999999987 99999754
No 37
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=96.71 E-value=0.005 Score=59.07 Aligned_cols=86 Identities=22% Similarity=0.270 Sum_probs=73.3
Q ss_pred HhcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCce
Q 017670 200 HEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRP 279 (368)
Q Consensus 200 ~E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRP 279 (368)
++.=|-|.+-||.+.-|.+|+.-+|..-+.-. --.||+..|..-.-|-|||-|.-+.+|+-||..|+...| |||-
T Consensus 10 v~gm~SLkVdNLTyRTspd~LrrvFekYG~vg--DVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~l---dgRe 84 (256)
T KOG4207|consen 10 VEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVG--DVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVL---DGRE 84 (256)
T ss_pred cccceeEEecceeccCCHHHHHHHHHHhCccc--ceecccccccccccceeEEEeeecchHHHHHHhhcceee---ccce
Confidence 45557899999999999999999987765432 236999999999999999999999999999999999977 9999
Q ss_pred e---eeccCCCCCC
Q 017670 280 L---LGSIGTPCFT 290 (368)
Q Consensus 280 L---~~S~g~~~~p 290 (368)
| +|--|-+.++
T Consensus 85 lrVq~arygr~~d~ 98 (256)
T KOG4207|consen 85 LRVQMARYGRPSDL 98 (256)
T ss_pred eeehhhhcCCCccc
Confidence 9 7777776554
No 38
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=96.58 E-value=0.004 Score=61.42 Aligned_cols=76 Identities=22% Similarity=0.268 Sum_probs=59.6
Q ss_pred hcccEEEEecCCCCCCchHHHHHHHHHhhc--------------------------------------------------
Q 017670 201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKE-------------------------------------------------- 230 (368)
Q Consensus 201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke-------------------------------------------------- 230 (368)
++-+.||+.|||+.+|.+=|.-||.+++--
T Consensus 4 ~~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~e~~v~wa~~p~nQsk~t~~~hfhvfvgdls~eI~~e~lr~aF 83 (321)
T KOG0148|consen 4 DEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFDELKVNWATAPGNQSKPTSNQHFHVFVGDLSPEIDNEKLREAF 83 (321)
T ss_pred CCCceEEeeccChhhHHHHHHHHHHhccccccceeehhhhccccccCcccCCCCccccceeEEehhcchhcchHHHHHHh
Confidence 456789999999999988888888876532
Q ss_pred -----cceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCcee
Q 017670 231 -----NCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 280 (368)
Q Consensus 231 -----~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL 280 (368)
--+||+|--.+. .-.-|++||-|..|++|+.||..||.--| ++|-+
T Consensus 84 ~pFGevS~akvirD~~T-~KsKGYgFVSf~~k~dAEnAI~~MnGqWl---G~R~I 134 (321)
T KOG0148|consen 84 APFGEVSDAKVIRDMNT-GKSKGYGFVSFPNKEDAENAIQQMNGQWL---GRRTI 134 (321)
T ss_pred ccccccccceEeecccC-CcccceeEEeccchHHHHHHHHHhCCeee---cccee
Confidence 345565554444 34558999999999999999999999999 88764
No 39
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=96.54 E-value=0.0034 Score=63.23 Aligned_cols=72 Identities=22% Similarity=0.184 Sum_probs=60.7
Q ss_pred HhcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCce
Q 017670 200 HEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRP 279 (368)
Q Consensus 200 ~E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRP 279 (368)
+..=+.|||.||-++++-.||.|-|.+-|...+.+ ..+.-|=|||-|+||++|+-|.-+.-+.++ .+|+-
T Consensus 225 D~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~--------~~~~~~CAFv~ftTR~aAE~Aae~~~n~lv--I~G~R 294 (377)
T KOG0153|consen 225 DTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIR--------ILPRKGCAFVTFTTREAAEKAAEKSFNKLV--INGFR 294 (377)
T ss_pred ccceeEEEecccccchhHHHHHHHHhhcCCeeeEE--------eecccccceeeehhhHHHHHHHHhhcceee--ecceE
Confidence 34456899999999999999999999999998887 346778999999999999999999988533 47755
Q ss_pred ee
Q 017670 280 LL 281 (368)
Q Consensus 280 L~ 281 (368)
|.
T Consensus 295 l~ 296 (377)
T KOG0153|consen 295 LK 296 (377)
T ss_pred EE
Confidence 44
No 40
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=96.54 E-value=0.0042 Score=64.36 Aligned_cols=80 Identities=24% Similarity=0.218 Sum_probs=69.5
Q ss_pred HhcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCce
Q 017670 200 HEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRP 279 (368)
Q Consensus 200 ~E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRP 279 (368)
.++=-+|||.||-.+.|-+-|+.+|.+.++.-.-.|+ + -.|||=|..|++|..||+.+|.-|| +|-|
T Consensus 256 ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~--r--------DYaFVHf~eR~davkAm~~~ngkel---dG~~ 322 (506)
T KOG0117|consen 256 MSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKP--R--------DYAFVHFAEREDAVKAMKETNGKEL---DGSP 322 (506)
T ss_pred hhheeeeeeeccchhhhHHHHHHHHHhccceEEeecc--c--------ceeEEeecchHHHHHHHHHhcCcee---cCce
Confidence 4455689999999999999999999999877666644 1 2799999999999999999999999 9999
Q ss_pred eeeccCCCCCCCC
Q 017670 280 LLGSIGTPCFTGK 292 (368)
Q Consensus 280 L~~S~g~~~~p~k 292 (368)
|=++-+.|.+-++
T Consensus 323 iEvtLAKP~~k~k 335 (506)
T KOG0117|consen 323 IEVTLAKPVDKKK 335 (506)
T ss_pred EEEEecCChhhhc
Confidence 9999988876555
No 41
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=96.37 E-value=0.0073 Score=57.43 Aligned_cols=67 Identities=25% Similarity=0.313 Sum_probs=55.4
Q ss_pred EEEEecCCCCCCchHHHH----HHHHHhhccceecccCCcccCC-CCCceEEEEEechHHHHHHHHhhccceeeecCCce
Q 017670 205 LVVLENLDPSYTSTVVED----LVWHAFKENCSAKMIPRVAFAS-PYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRP 279 (368)
Q Consensus 205 lV~LqNLDps~ts~dVed----Li~~a~ke~c~AkmI~~~~ys~-p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRP 279 (368)
.+||.||.-..--+|+.. ||.+-++--|. +++.. ...|+|||+|+.-++|-.|++.|++=-. .|.|
T Consensus 11 TlYInnLnekI~~~elkrsL~~LFsqfG~ildI------~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpF---ygK~ 81 (221)
T KOG4206|consen 11 TLYINNLNEKIKKDELKRSLYLLFSQFGKILDI------SAFKTPKMRGQAFVVFKETEAASAALRALQGFPF---YGKP 81 (221)
T ss_pred eEeehhccccccHHHHHHHHHHHHHhhCCeEEE------EecCCCCccCceEEEecChhHHHHHHHHhcCCcc---cCch
Confidence 899999999999999997 66665555444 35533 7889999999999999999999988777 7888
Q ss_pred e
Q 017670 280 L 280 (368)
Q Consensus 280 L 280 (368)
|
T Consensus 82 m 82 (221)
T KOG4206|consen 82 M 82 (221)
T ss_pred h
Confidence 5
No 42
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=96.19 E-value=0.012 Score=58.16 Aligned_cols=91 Identities=19% Similarity=0.208 Sum_probs=73.7
Q ss_pred cCCChHHHHHHHHhcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhh
Q 017670 188 KELPWEERIRVAHEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKL 267 (368)
Q Consensus 188 K~lPWEe~lr~A~E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kl 267 (368)
+++-+||-.--+--.+|.||..|+-+++|.+++++.|..-+. .-+.|+. +--|.|||-|-|+|+|..||-.+
T Consensus 149 ~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~-I~EVRvF-------k~qGYaFVrF~tkEaAahAIv~m 220 (321)
T KOG0148|consen 149 KPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGP-IQEVRVF-------KDQGYAFVRFETKEAAAHAIVQM 220 (321)
T ss_pred CCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCc-ceEEEEe-------cccceEEEEecchhhHHHHHHHh
Confidence 347788888888888999999999999998888887765332 3344332 44688999999999999999999
Q ss_pred ccceeeecCCceeeeccCCCCC
Q 017670 268 EEGCLLLSNGRPLLGSIGTPCF 289 (368)
Q Consensus 268 n~~cL~ls~GRPL~~S~g~~~~ 289 (368)
|+.=+ +|-++-||-|.-..
T Consensus 221 Nntei---~G~~VkCsWGKe~~ 239 (321)
T KOG0148|consen 221 NNTEI---GGQLVRCSWGKEGD 239 (321)
T ss_pred cCcee---CceEEEEeccccCC
Confidence 99988 99999999985443
No 43
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=95.96 E-value=0.0073 Score=60.10 Aligned_cols=80 Identities=24% Similarity=0.362 Sum_probs=66.2
Q ss_pred HhcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCce
Q 017670 200 HEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRP 279 (368)
Q Consensus 200 ~E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRP 279 (368)
.-++.-||++|||..++.+.+.+++.. +++.|.++++-- + +++..|.+||.|.+-+.|..|+..+|+..+ .|+|
T Consensus 267 ~~~~~nl~vknld~~~~~e~L~~~f~~-~GeI~s~kv~~~-~-~g~skG~gfV~fs~~eeA~~A~~~~n~~~i---~~k~ 340 (369)
T KOG0123|consen 267 SLQGANLYVKNLDETLSDEKLRKIFSS-FGEITSAKVMVD-E-NGKSKGFGFVEFSSPEEAKKAMTEMNGRLI---GGKP 340 (369)
T ss_pred cccccccccccCccccchhHHHHHHhc-ccceeeEEEEec-c-CCCccceEEEEcCCHHHHHHHHHhhChhhh---cCCc
Confidence 567899999999999999999998876 445555655532 2 268999999999999999999999999988 9999
Q ss_pred eeeccC
Q 017670 280 LLGSIG 285 (368)
Q Consensus 280 L~~S~g 285 (368)
++-+.+
T Consensus 341 l~vav~ 346 (369)
T KOG0123|consen 341 LYVAVA 346 (369)
T ss_pred hhhhHH
Confidence 985444
No 44
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=95.70 E-value=0.013 Score=55.21 Aligned_cols=85 Identities=20% Similarity=0.160 Sum_probs=69.5
Q ss_pred cccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCceee
Q 017670 202 HGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLL 281 (368)
Q Consensus 202 ~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL~ 281 (368)
.-+.|++.|+|+..|.++|+..|.--+..+.+ .|+...|...+-|.||+-|...+.+..|+. ||.+.| .||++.
T Consensus 100 d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~--ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i---~~~~i~ 173 (231)
T KOG4209|consen 100 DAPSVWVGNVDFLVTLTKIELHFESCGGINRV--TVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEI---PGPAIE 173 (231)
T ss_pred CCceEEEeccccccccchhhheeeccCCccce--eeeccccCCCcceeEEEecccHhhhHHHhh-cCCccc---ccccce
Confidence 45789999999999999988877543333222 478888877889999999999999999999 999999 999988
Q ss_pred eccCCCCCCCC
Q 017670 282 GSIGTPCFTGK 292 (368)
Q Consensus 282 ~S~g~~~~p~k 292 (368)
-+-.-.-.|+.
T Consensus 174 vt~~r~~~pg~ 184 (231)
T KOG4209|consen 174 VTLKRTNVPGM 184 (231)
T ss_pred eeeeeeecCCc
Confidence 77765556665
No 45
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=95.67 E-value=0.019 Score=58.97 Aligned_cols=75 Identities=17% Similarity=0.078 Sum_probs=61.8
Q ss_pred cEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCceeeec
Q 017670 204 TLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLLGS 283 (368)
Q Consensus 204 tlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL~~S 283 (368)
..|++.|+.+.++.++|.+||..++...-..-+. ..-+....|.+|+-|+.-+.|..|++.||+.=+ +||+|-..
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~--D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~---~gr~l~v~ 93 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVY--DRETGKPKGFGFCEFTDEETAERAIRNLNGAEF---NGRKLRVN 93 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecc--cccCCCcCceeeEecCchhhHHHHHHhcCCccc---CCceEEee
Confidence 8899999999999999999999988765444111 112247788999999999999999999999988 99997644
No 46
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=95.65 E-value=0.018 Score=56.06 Aligned_cols=64 Identities=19% Similarity=0.120 Sum_probs=50.2
Q ss_pred cEEEEecCCCCCCchHHHHHHHHHhhc-cceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccc
Q 017670 204 TLVVLENLDPSYTSTVVEDLVWHAFKE-NCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEG 270 (368)
Q Consensus 204 tlV~LqNLDps~ts~dVedLi~~a~ke-~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~ 270 (368)
..|.|.||--.-+..|++|||+-.+-. +|+. .+. --....-|-|||-|.+|++|..||..||.-
T Consensus 190 ~tvRvtNLsed~~E~dL~eLf~~fg~i~rvyl-ard--K~TG~~kGFAFVtF~sRddA~rAI~~LnG~ 254 (270)
T KOG0122|consen 190 ATVRVTNLSEDMREDDLEELFRPFGPITRVYL-ARD--KETGLSKGFAFVTFESRDDAARAIADLNGY 254 (270)
T ss_pred ceeEEecCccccChhHHHHHhhccCccceeEE-EEc--cccCcccceEEEEEecHHHHHHHHHHccCc
Confidence 458999999999999999999985544 4433 111 112356678999999999999999999875
No 47
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=95.43 E-value=0.037 Score=58.95 Aligned_cols=88 Identities=25% Similarity=0.269 Sum_probs=69.3
Q ss_pred HHHHHhcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhh----ccce
Q 017670 196 IRVAHEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKL----EEGC 271 (368)
Q Consensus 196 lr~A~E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kl----n~~c 271 (368)
++.-+-.|..|.|.||-+-.|.++|-+.|.+- ++--+|++.-+... ...-|.|||-|+|-.+|..+|.-- ..|-
T Consensus 285 ~~en~~~~~tVFvRNL~fD~tEEel~~~fskF-G~v~ya~iV~~k~T-~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~ 362 (678)
T KOG0127|consen 285 TRENITEGKTVFVRNLPFDTTEEELKEHFSKF-GEVKYAIIVKDKDT-GHSKGTAFVKFKTQIAAQNCIEAASPASEDGS 362 (678)
T ss_pred ccccccccceEEEecCCccccHHHHHHHHHhh-ccceeEEEEeccCC-CCcccceEEEeccHHHHHHHHHhcCccCCCce
Confidence 44556678999999999999999999999874 45557765544433 688899999999999999999887 5554
Q ss_pred eeecCCceeeeccCC
Q 017670 272 LLLSNGRPLLGSIGT 286 (368)
Q Consensus 272 L~ls~GRPL~~S~g~ 286 (368)
++| +||-|-.+.++
T Consensus 363 ~ll-~GR~Lkv~~Av 376 (678)
T KOG0127|consen 363 VLL-DGRLLKVTLAV 376 (678)
T ss_pred EEE-eccEEeeeecc
Confidence 556 99999855543
No 48
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=95.15 E-value=0.066 Score=57.13 Aligned_cols=79 Identities=19% Similarity=0.212 Sum_probs=66.3
Q ss_pred EEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCceeeecc
Q 017670 205 LVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLLGSI 284 (368)
Q Consensus 205 lV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL~~S~ 284 (368)
.|.|.||--+-...|++-+|...+.- .++ .|| .-++..-+|-|||-|+-+.+|..||..+|.--+ +|||+-.-.
T Consensus 119 rLIIRNLPf~~k~~dLk~vFs~~G~V-~Ei-~IP-~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i---~gR~VAVDW 192 (678)
T KOG0127|consen 119 RLIIRNLPFKCKKPDLKNVFSNFGKV-VEI-VIP-RKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKI---DGRPVAVDW 192 (678)
T ss_pred eEEeecCCcccCcHHHHHHHhhcceE-EEE-Ecc-cCCCCCccceEEEEEeeHHHHHHHHHhccCcee---cCceeEEee
Confidence 57899999999999999999886653 344 577 667788889999999999999999999999877 999998666
Q ss_pred CCCCC
Q 017670 285 GTPCF 289 (368)
Q Consensus 285 g~~~~ 289 (368)
+++.+
T Consensus 193 AV~Kd 197 (678)
T KOG0127|consen 193 AVDKD 197 (678)
T ss_pred ecccc
Confidence 66554
No 49
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=94.97 E-value=0.06 Score=54.61 Aligned_cols=79 Identities=25% Similarity=0.390 Sum_probs=61.3
Q ss_pred cccEEEEecCCCCCCchHHH---HHHHHH---hhcccee--cccCCcccCCCCCceEEEEEechHHHHHHHHhhccceee
Q 017670 202 HGTLVVLENLDPSYTSTVVE---DLVWHA---FKENCSA--KMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLL 273 (368)
Q Consensus 202 ~GtlV~LqNLDps~ts~dVe---dLi~~a---~ke~c~A--kmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ 273 (368)
.-+.|.|.|+ ||..+.+ +|+.+. +.+.|.- .+=.-+-|+.+|-|-|.|.|++.++|+.+|.-|+...+
T Consensus 264 ~~~tVi~kn~---Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d~hPdGvvtV~f~n~eeA~~ciq~m~GR~f- 339 (382)
T KOG1548|consen 264 ADRTVILKNM---FTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYDRHPDGVVTVSFRNNEEADQCIQTMDGRWF- 339 (382)
T ss_pred CCcEEEeeec---CCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEeccCCCceeEEEeCChHHHHHHHHHhcCeee-
Confidence 3578889998 7777766 666664 4555542 12223568889999999999999999999999999988
Q ss_pred ecCCceeeeccCC
Q 017670 274 LSNGRPLLGSIGT 286 (368)
Q Consensus 274 ls~GRPL~~S~g~ 286 (368)
+||-|.|+.-.
T Consensus 340 --dgRql~A~i~D 350 (382)
T KOG1548|consen 340 --DGRQLTASIWD 350 (382)
T ss_pred --cceEEEEEEeC
Confidence 99999998643
No 50
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=94.79 E-value=0.07 Score=55.90 Aligned_cols=74 Identities=24% Similarity=0.234 Sum_probs=61.5
Q ss_pred cEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCceeee
Q 017670 204 TLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLLG 282 (368)
Q Consensus 204 tlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL~~ 282 (368)
|-|||.|+-|-|.=-|+.|||++...|--++-..-- -+.-.-|-|-|.|++.|-+.-|+.+||---| +||||+.
T Consensus 45 R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D--~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~---~GR~l~v 118 (608)
T KOG4212|consen 45 RSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFD--ESGKARGCAVVEFKDPENVQKALEKLNKYEV---NGRELVV 118 (608)
T ss_pred ceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecc--cCCCcCCceEEEeeCHHHHHHHHHHhhhccc---cCceEEE
Confidence 459999999999999999999998888666532211 1226678899999999999999999999888 9999983
No 51
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=94.52 E-value=0.12 Score=43.32 Aligned_cols=69 Identities=19% Similarity=0.212 Sum_probs=56.4
Q ss_pred cEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhcccee
Q 017670 204 TLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCL 272 (368)
Q Consensus 204 tlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL 272 (368)
|.|-|.|+-..||.+++.++|.+.++-.-.=--.|...-..-|.|.|||=|.+.++|......+++..+
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w 70 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKW 70 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCcc
Confidence 789999999999999999999987654333333444545558999999999999999999999887766
No 52
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=94.49 E-value=0.067 Score=50.50 Aligned_cols=95 Identities=17% Similarity=0.120 Sum_probs=63.0
Q ss_pred HhcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCce
Q 017670 200 HEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRP 279 (368)
Q Consensus 200 ~E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRP 279 (368)
...|.-+.++||||.+...-+=|+|+--+.+...-++.+ ..+..-.-|-+|+.|.+.++++.||..+|.-.| .+||
T Consensus 93 l~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~r-d~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l---~nr~ 168 (203)
T KOG0131|consen 93 LDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMR-DPDTGNPKGFGFINYASFEASDAAIGSMNGQYL---CNRP 168 (203)
T ss_pred ccccccccccccCcchhHHHHHHHHHhccccccCCcccc-cccCCCCCCCeEEechhHHHHHHHHHHhccchh---cCCc
Confidence 345667789999996665555566655444433322221 222223345799999999999999999999988 9999
Q ss_pred eeeccCCCCCCCCCCccccceeh
Q 017670 280 LLGSIGTPCFTGKQSKFVGHLAL 302 (368)
Q Consensus 280 L~~S~g~~~~p~k~s~f~GHl~i 302 (368)
.+-+.+--.+-+. -+|.+-
T Consensus 169 itv~ya~k~~~kg----~~~g~~ 187 (203)
T KOG0131|consen 169 ITVSYAFKKDTKG----ERHGTA 187 (203)
T ss_pred eEEEEEEecCCCc----ccCCCH
Confidence 9977665444333 455543
No 53
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=93.64 E-value=0.11 Score=47.60 Aligned_cols=75 Identities=13% Similarity=0.081 Sum_probs=59.7
Q ss_pred cccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCceee
Q 017670 202 HGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLL 281 (368)
Q Consensus 202 ~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL~ 281 (368)
+|=+|++.++++--|.+||+|.|.+-+..+-.- .+..--+.+--|+|+|-|-|.+.|.+||..+|..-| =|.++-
T Consensus 71 EGwIi~VtgvHeEatEedi~d~F~dyGeiKNih--LNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~l---l~q~v~ 145 (170)
T KOG0130|consen 71 EGWIIFVTGVHEEATEEDIHDKFADYGEIKNIH--LNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAEL---LGQNVS 145 (170)
T ss_pred eeEEEEEeccCcchhHHHHHHHHhhccccccee--eccccccccccceeeeehHhHHHHHHHHHhccchhh---hCCcee
Confidence 577899999999999999999999877654332 333344456778999999999999999999998777 255554
No 54
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=93.50 E-value=0.25 Score=41.76 Aligned_cols=71 Identities=20% Similarity=0.335 Sum_probs=47.1
Q ss_pred cEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCceeeec
Q 017670 204 TLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLLGS 283 (368)
Q Consensus 204 tlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL~~S 283 (368)
++||+.||--.....-|.-=+++. -++|--|++..+ .|.|.+-|.+.+.|+.|.++|++--+ .|+-+.-+
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qL-sdNCGGkVl~v~------~~tAilrF~~~~~A~RA~KRmegEdV---fG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQL-SDNCGGKVLSVS------GGTAILRFPNQEFAERAQKRMEGEDV---FGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHH-HHTTT--EEE--------TT-EEEEESSHHHHHHHHHHHTT--S---SSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHH-hhccCCEEEEEe------CCEEEEEeCCHHHHHHHHHhhccccc---ccceEEEE
Confidence 789999998777766666555553 369999999874 48999999999999999999997755 66666544
Q ss_pred c
Q 017670 284 I 284 (368)
Q Consensus 284 ~ 284 (368)
+
T Consensus 73 ~ 73 (90)
T PF11608_consen 73 F 73 (90)
T ss_dssp S
T ss_pred E
Confidence 3
No 55
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=92.99 E-value=0.11 Score=43.40 Aligned_cols=60 Identities=23% Similarity=0.278 Sum_probs=36.2
Q ss_pred ccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccc
Q 017670 203 GTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEG 270 (368)
Q Consensus 203 GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~ 270 (368)
|.+|.|.+++...+-.||.++|.+.+ -|.-+-| .+-...|+|=|.+.++|..|+.++...
T Consensus 1 G~il~~~g~~~~~~re~iK~~f~~~g-------~V~yVD~-~~G~~~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 1 GCILKFSGLGEPTSREDIKEAFSQFG-------EVAYVDF-SRGDTEGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp --EEEEEE--SS--HHHHHHHT-SS---------EEEEE---TT-SEEEEEESS---HHHHHHHHHHT
T ss_pred CeEEEEecCCCCcCHHHHHHHHHhcC-------CcceEEe-cCCCCEEEEEECCcchHHHHHHHHHhc
Confidence 78999999999999888877776633 2222333 244559999999999999999999987
No 56
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=92.16 E-value=0.24 Score=47.10 Aligned_cols=62 Identities=21% Similarity=0.030 Sum_probs=51.9
Q ss_pred cEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeec
Q 017670 204 TLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLS 275 (368)
Q Consensus 204 tlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls 275 (368)
..|||.+|.+...-.|||+++|.-+++.-.. --+|-+||+|...-+|+-||.-||..-|+..
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~----------mk~gf~fv~fed~rda~Dav~~l~~~~l~~e 63 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDAD----------MKNGFGFVEFEDPRDADDAVHDLDGKELCGE 63 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccce----------eecccceeccCchhhhhcccchhcCceecce
Confidence 4699999999999999999999988765433 3456679999999999999999998877443
No 57
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=91.97 E-value=0.082 Score=47.70 Aligned_cols=73 Identities=16% Similarity=0.272 Sum_probs=48.7
Q ss_pred HhcccEEEEecCCCCCCchHHHHHHHHHhhcc---ceec-ccCCcccCCCCCceEEEEEechHHHHHHHHhhcccee
Q 017670 200 HEHGTLVVLENLDPSYTSTVVEDLVWHAFKEN---CSAK-MIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCL 272 (368)
Q Consensus 200 ~E~GtlV~LqNLDps~ts~dVedLi~~a~ke~---c~Ak-mI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL 272 (368)
...|+.|.|.+|-|++|.++..+.|..++... .+.. ..+...|..+.+.+||+.|.+.++...+...+++--.
T Consensus 4 ~~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F 80 (176)
T PF03467_consen 4 EKEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVF 80 (176)
T ss_dssp -----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEE
T ss_pred cccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEE
Confidence 35688999999999999999888777645544 2222 3556667678888999999999999999999987543
No 58
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=91.62 E-value=0.3 Score=51.39 Aligned_cols=67 Identities=21% Similarity=0.223 Sum_probs=49.7
Q ss_pred hcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhcc
Q 017670 201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEE 269 (368)
Q Consensus 201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~ 269 (368)
+---+|.|.-|-.+.|..||.|.|. +=+....=+.=..-+-.|.+|.|||-|.|-+.|+.|+.+-.+
T Consensus 101 ~~d~vVRLRGLPfscte~dI~~FFa--GL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~rhre 167 (510)
T KOG4211|consen 101 ANDGVVRLRGLPFSCTEEDIVEFFA--GLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALGRHRE 167 (510)
T ss_pred CCCceEEecCCCccCcHHHHHHHhc--CCcccccceeeeccCCCCcccceEEEecCHHHHHHHHHHHHH
Confidence 3456899999999999999998874 222222212122344468999999999999999999987654
No 59
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=91.47 E-value=0.42 Score=49.09 Aligned_cols=81 Identities=17% Similarity=0.250 Sum_probs=60.0
Q ss_pred cccEEEEecCCCCCCchHHH------HHHHHHhhccceecccCCcccCC-CCCceE--EEEEechHHHHHHHHhhcccee
Q 017670 202 HGTLVVLENLDPSYTSTVVE------DLVWHAFKENCSAKMIPRVAFAS-PYFGQS--FVIFKTREVAELVVTKLEEGCL 272 (368)
Q Consensus 202 ~GtlV~LqNLDps~ts~dVe------dLi~~a~ke~c~AkmI~~~~ys~-p~sG~A--~VIF~treaAdsAi~Kln~~cL 272 (368)
|.-|||+-.+-|-|..+|+. +.|-+-++.+-.+ |++-+-+. --+|-| |+-|.|+++|.++|..+++.++
T Consensus 113 QKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIv--vNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~ 190 (480)
T COG5175 113 QKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIV--VNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLL 190 (480)
T ss_pred ecceeEEecCCCCCCcccccccccchhhhhhccceeEEE--ecccccccccccccceEEEEecchHHHHHHHHHhccccc
Confidence 34578888999999999965 5666666655444 44443222 222224 8999999999999999999988
Q ss_pred eecCCceeeeccCCC
Q 017670 273 LLSNGRPLLGSIGTP 287 (368)
Q Consensus 273 ~ls~GRPL~~S~g~~ 287 (368)
|||-|-|+-|+-
T Consensus 191 ---DGr~lkatYGTT 202 (480)
T COG5175 191 ---DGRVLKATYGTT 202 (480)
T ss_pred ---cCceEeeecCch
Confidence 999999998863
No 60
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=91.34 E-value=0.18 Score=54.74 Aligned_cols=73 Identities=25% Similarity=0.247 Sum_probs=62.3
Q ss_pred ccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccC-CCCCceEEEEEechHHHHHHHHhhccceeeecCCceee
Q 017670 203 GTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFA-SPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLL 281 (368)
Q Consensus 203 GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys-~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL~ 281 (368)
||.|+|+|+-..-|.-||+.||---++++|.= ||.- +. .-|.|-|||-|-|...|..|+.-|-++-| .||-||
T Consensus 613 ~tKIlVRNipFeAt~rEVr~LF~aFGqlksvR--lPKK-~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHl---yGRrLV 686 (725)
T KOG0110|consen 613 GTKILVRNIPFEATKREVRKLFTAFGQLKSVR--LPKK-IGKGAHRGFGFVDFLTPREAKNAFDALGSTHL---YGRRLV 686 (725)
T ss_pred cceeeeeccchHHHHHHHHHHHhcccceeeec--cchh-hcchhhccceeeeccCcHHHHHHHHhhcccce---echhhh
Confidence 99999999999999999999998877887754 3433 22 36789999999999999999999998888 788777
No 61
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=91.32 E-value=0.53 Score=45.81 Aligned_cols=111 Identities=17% Similarity=0.118 Sum_probs=75.3
Q ss_pred cEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCceee--
Q 017670 204 TLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLL-- 281 (368)
Q Consensus 204 tlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL~-- 281 (368)
|+|++.+|-.--+.+++++-|. -|+|..+|.+|-- .+..+.-|..||-|+.+++|.+|..--|-. + |||--=
T Consensus 13 TKifVggL~w~T~~~~l~~yFe-qfGeI~eavvitd-~~t~rskGyGfVTf~d~~aa~rAc~dp~pi-I---dGR~aNcn 86 (247)
T KOG0149|consen 13 TKIFVGGLAWETHKETLRRYFE-QFGEIVEAVVITD-KNTGRSKGYGFVTFRDAEAATRACKDPNPI-I---DGRKANCN 86 (247)
T ss_pred EEEEEcCcccccchHHHHHHHH-HhCceEEEEEEec-cCCccccceeeEEeecHHHHHHHhcCCCCc-c---cccccccc
Confidence 7888888888888888887664 5888999977753 344688889999999999999999877764 3 888743
Q ss_pred -eccCCC---CCCCCCCccccceehhhHHH---HHHHHHHhhhccc
Q 017670 282 -GSIGTP---CFTGKQSKFVGHLALDKLKF---QMQREMREAVSTS 320 (368)
Q Consensus 282 -~S~g~~---~~p~k~s~f~GHl~i~k~r~---q~qrEmr~AVSTS 320 (368)
||.|.- ..|..+.-..||+-..-..| -.|..++--+..|
T Consensus 87 lA~lg~~pR~~~~~~~~~~~g~~~~~~~~~~~~~~q~~~~~~~~~s 132 (247)
T KOG0149|consen 87 LASLGGKPRPVPPSQPQQAPGGQQNRPTGMLRALPQQTFGIPPHYS 132 (247)
T ss_pred hhhhcCccCCCCCCCcccccccccCCcccccccccccccCCCCccc
Confidence 344322 33444555556654433333 2335555545444
No 62
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=91.23 E-value=0.39 Score=50.29 Aligned_cols=89 Identities=18% Similarity=0.173 Sum_probs=70.1
Q ss_pred ccEEEEecCCCCCCchHHHHHHHHHhh-ccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCceee
Q 017670 203 GTLVVLENLDPSYTSTVVEDLVWHAFK-ENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLL 281 (368)
Q Consensus 203 GtlV~LqNLDps~ts~dVedLi~~a~k-e~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL~ 281 (368)
.+.|+|.=|.-..|..||++||..-+. |.|+- =+..+ ...-|-|||-|.+||-|..||+-||...-|=--.-|||
T Consensus 124 e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~i---lrd~~-~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLV 199 (510)
T KOG0144|consen 124 ERKLFVGMLSKQCTENEVREIFSRFGHIEDCYI---LRDPD-GLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLV 199 (510)
T ss_pred chhhhhhhccccccHHHHHHHHHhhCccchhhh---eeccc-ccccceeEEEEehHHHHHHHHHhhccceeeccCCCceE
Confidence 467889999999999999999999654 34442 23333 46679999999999999999999998877665668999
Q ss_pred eccCCCCCCCCCCc
Q 017670 282 GSIGTPCFTGKQSK 295 (368)
Q Consensus 282 ~S~g~~~~p~k~s~ 295 (368)
--++++.-|+...+
T Consensus 200 VkFADtqkdk~~~~ 213 (510)
T KOG0144|consen 200 VKFADTQKDKDGKR 213 (510)
T ss_pred EEecccCCCchHHH
Confidence 88888777765443
No 63
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=88.92 E-value=0.7 Score=49.18 Aligned_cols=117 Identities=21% Similarity=0.161 Sum_probs=80.9
Q ss_pred EEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCceeeeccC
Q 017670 206 VVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLLGSIG 285 (368)
Q Consensus 206 V~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL~~S~g 285 (368)
||+.||+.-.|.+++..||.--++. +.=+.+...-.....|..|+-|...+.|..|+-.||. |-| .||+|.-+-+
T Consensus 281 l~vgnLHfNite~~lr~ifepfg~I--e~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lng--fel-AGr~ikV~~v 355 (549)
T KOG0147|consen 281 LYVGNLHFNITEDMLRGIFEPFGKI--ENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNG--FEL-AGRLIKVSVV 355 (549)
T ss_pred hhhcccccCchHHHHhhhccCcccc--eeeeeccccccccccCcceEEEecHHHHHHHHHHhcc--cee-cCceEEEEEe
Confidence 7999999999999988777544332 3323333333468899999999999999999999999 444 9999986655
Q ss_pred CCCCCCC---CCccc------cceeh-hhHHHHHHHHHHhhhccccCCCCCc
Q 017670 286 TPCFTGK---QSKFV------GHLAL-DKLKFQMQREMREAVSTSHCSQPNS 327 (368)
Q Consensus 286 ~~~~p~k---~s~f~------GHl~i-~k~r~q~qrEmr~AVSTSHCSQPNt 327 (368)
+-.+-.+ +..|- +-|++ +-.|.|.|+..-.+.-+|-||-+|+
T Consensus 356 ~~r~~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~~~s~~~~ 407 (549)
T KOG0147|consen 356 TERVDTKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRSLPSTAIS 407 (549)
T ss_pred eeecccccccccccccchhhccccccccccHHHHHHHHhccCCccccchhhh
Confidence 3332222 11111 11111 2337788888888888888888775
No 64
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=88.34 E-value=0.78 Score=50.57 Aligned_cols=82 Identities=20% Similarity=0.127 Sum_probs=64.4
Q ss_pred HHhcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCC---CCCceEEEEEechHHHHHHHHhhccceeeec
Q 017670 199 AHEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFAS---PYFGQSFVIFKTREVAELVVTKLEEGCLLLS 275 (368)
Q Consensus 199 A~E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~---p~sG~A~VIF~treaAdsAi~Kln~~cL~ls 275 (368)
+.-+-|-||+.||-|++++..+-..|-.-+-+.-.-.|-|++--.. +|+ +||-|..|.+|+.|+..|++-.+
T Consensus 170 gDP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~c--gfvafmnR~D~era~k~lqg~iv--- 244 (877)
T KOG0151|consen 170 GDPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNC--GFVAFMNRADAERALKELQGIIV--- 244 (877)
T ss_pred CCCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhcccccc--ceeeehhhhhHHHHHHHhcceee---
Confidence 4556789999999999998877666655566777778888887655 555 49999999999999999999866
Q ss_pred CCceeeeccC
Q 017670 276 NGRPLLGSIG 285 (368)
Q Consensus 276 ~GRPL~~S~g 285 (368)
-+++|---.|
T Consensus 245 ~~~e~K~gWg 254 (877)
T KOG0151|consen 245 MEYEMKLGWG 254 (877)
T ss_pred eeeeeeeccc
Confidence 5666654444
No 65
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=86.86 E-value=0.77 Score=45.27 Aligned_cols=120 Identities=18% Similarity=0.196 Sum_probs=80.8
Q ss_pred cEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeec-CCceee-
Q 017670 204 TLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLS-NGRPLL- 281 (368)
Q Consensus 204 tlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls-~GRPL~- 281 (368)
.-||+.||-+.+.++..+.-++.-+.--... -.+-|...++|.-.|-|-.+-.|..|.++.+++||.+. .|||..
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av---~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~V 108 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAV---AKVDDRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGV 108 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchhe---eeecccccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCC
Confidence 6799999999998888777777544332222 11345559999999999999999999999999998442 344422
Q ss_pred -------eccCCCCCCCCCCccccceehhhHHHHHHHHHHhhhccccCCCCCcchhhcccchhhhHH
Q 017670 282 -------GSIGTPCFTGKQSKFVGHLALDKLKFQMQREMREAVSTSHCSQPNSLEYDMAIEWSLLQE 341 (368)
Q Consensus 282 -------~S~g~~~~p~k~s~f~GHl~i~k~r~q~qrEmr~AVSTSHCSQPNtiEYdmA~eW~Llqe 341 (368)
+--|+|-. ..+..+.|| +.+-..-|-.|+++.||.-+..|..|-+
T Consensus 109 eP~eq~~d~~G~~~k-~~~~~~~~~--------------~e~~~p~r~a~~g~fe~e~~~~~k~l~~ 160 (275)
T KOG0115|consen 109 EPMEQPDDNDGGPEK-GGGGGPSGP--------------KEREQPPRFAQQGSFEVEYGSRWKMLGG 160 (275)
T ss_pred ChhhccCCCCcchhh-cCCCCCCCC--------------ccccCCchhccccccccccCcccccccc
Confidence 11111111 112233333 2334456788999999999999988743
No 66
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=85.71 E-value=1.1 Score=43.10 Aligned_cols=62 Identities=16% Similarity=0.053 Sum_probs=47.6
Q ss_pred cccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhc
Q 017670 202 HGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLE 268 (368)
Q Consensus 202 ~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln 268 (368)
.-+.+|+.||-+-+-.-||||||..-+...-.-.-+++ .+.+.|||-|-..-+|+-||.--|
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~-----g~ppfafVeFEd~RDAeDAiygRd 66 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRP-----GPPPFAFVEFEDPRDAEDAIYGRD 66 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCC-----CCCCeeEEEecCccchhhhhhccc
Confidence 34679999999999999999999987765433311111 235679999999999999998655
No 67
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=84.19 E-value=1.4 Score=45.93 Aligned_cols=59 Identities=22% Similarity=0.203 Sum_probs=46.0
Q ss_pred ccEEEEecCCCCCCchHHHHHHH-----HHhhccceecccCCccc-CCCCCceEEEEEechHHHHHHHHh
Q 017670 203 GTLVVLENLDPSYTSTVVEDLVW-----HAFKENCSAKMIPRVAF-ASPYFGQSFVIFKTREVAELVVTK 266 (368)
Q Consensus 203 GtlV~LqNLDps~ts~dVedLi~-----~a~ke~c~AkmI~~~~y-s~p~sG~A~VIF~treaAdsAi~K 266 (368)
--.|.+..|-+.-|..||-+.|- -.+.+..-- +++ +++.+|.|||.|..-+.|+.|+.|
T Consensus 161 qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLF-----V~rpdgrpTGdAFvlfa~ee~aq~aL~k 225 (508)
T KOG1365|consen 161 QVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLF-----VTRPDGRPTGDAFVLFACEEDAQFALRK 225 (508)
T ss_pred ceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEE-----EECCCCCcccceEEEecCHHHHHHHHHH
Confidence 45788999999999999998874 122332222 455 789999999999999999999876
No 68
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=84.14 E-value=1.8 Score=46.14 Aligned_cols=65 Identities=28% Similarity=0.301 Sum_probs=51.1
Q ss_pred HhcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhcccee
Q 017670 200 HEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCL 272 (368)
Q Consensus 200 ~E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL 272 (368)
.-+||||++ |||++++.+++..||- +++|-.+.+|-++ .-|..||-|=.--.|+.|++.||..-+
T Consensus 73 ~~~~~L~v~-nl~~~Vsn~~L~~~f~-~yGeir~ir~t~~------~~~~~~v~FyDvR~A~~Alk~l~~~~~ 137 (549)
T KOG4660|consen 73 MNQGTLVVF-NLPRSVSNDTLLRIFG-AYGEIREIRETPN------KRGIVFVEFYDVRDAERALKALNRREI 137 (549)
T ss_pred CccceEEEE-ecCCcCCHHHHHHHHH-hhcchhhhhcccc------cCceEEEEEeehHhHHHHHHHHHHHHh
Confidence 457887765 9999999999999985 5556666544333 457999999999999999999987544
No 69
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=83.87 E-value=1.9 Score=43.23 Aligned_cols=66 Identities=15% Similarity=0.148 Sum_probs=50.5
Q ss_pred ccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccc
Q 017670 203 GTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEG 270 (368)
Q Consensus 203 GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~ 270 (368)
|.-+|++.|--..|--|+|.||+.-++.. +.|+.. .....-.-|-+|+-|-.|+.|+.||+-||..
T Consensus 127 ~aNLYvSGlPktMtqkelE~iFs~fGrII-tSRiL~-dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~ 192 (360)
T KOG0145|consen 127 DANLYVSGLPKTMTQKELEQIFSPFGRII-TSRILV-DQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQ 192 (360)
T ss_pred ccceEEecCCccchHHHHHHHHHHhhhhh-hhhhhh-hcccceecceeEEEecchhHHHHHHHhccCC
Confidence 55799999999999999999999866542 222211 1122355678999999999999999999854
No 70
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=83.58 E-value=2 Score=45.49 Aligned_cols=58 Identities=26% Similarity=0.147 Sum_probs=42.0
Q ss_pred cEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHh
Q 017670 204 TLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTK 266 (368)
Q Consensus 204 tlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~K 266 (368)
-+|.|+-|--+-|-.||.|.|....=++ -.| +-.+.+++|.|||.|++-+++..|++|
T Consensus 11 ~~vr~rGLPwsat~~ei~~Ff~~~~I~~---~~~--~r~~Gr~sGeA~Ve~~seedv~~Alkk 68 (510)
T KOG4211|consen 11 FEVRLRGLPWSATEKEILDFFSNCGIEN---LEI--PRRNGRPSGEAYVEFTSEEDVEKALKK 68 (510)
T ss_pred eEEEecCCCccccHHHHHHHHhcCceeE---EEE--eccCCCcCcceEEEeechHHHHHHHHh
Confidence 3556666666677778888776544444 222 333479999999999999999999986
No 71
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=82.63 E-value=3.4 Score=43.73 Aligned_cols=65 Identities=22% Similarity=0.318 Sum_probs=49.3
Q ss_pred chHHHHHHHHHhhccc------eecccCCc-ccCC--CCCceEEEEEechHHHHHHHHhhccceeeecCCceeeeccC
Q 017670 217 STVVEDLVWHAFKENC------SAKMIPRV-AFAS--PYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLLGSIG 285 (368)
Q Consensus 217 s~dVedLi~~a~ke~c------~AkmI~~~-~ys~--p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL~~S~g 285 (368)
..|++||+. .++..| .--+||++ .... |-+|.-||-|.+.+++..|+.-|+..-. +||-+++|.-
T Consensus 416 d~EyeeIlE-dvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF---~nRtVvtsYy 489 (500)
T KOG0120|consen 416 DEEYEEILE-DVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKF---ANRTVVASYY 489 (500)
T ss_pred hHHHHHHHH-HHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCcee---CCcEEEEEec
Confidence 345556654 444544 33478888 3333 8889999999999999999999999987 9999998753
No 72
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=79.22 E-value=3.5 Score=42.84 Aligned_cols=66 Identities=20% Similarity=0.296 Sum_probs=54.8
Q ss_pred cEEEEecCCCCCCchHHHHHHHHHhhc-cceecccCCcccCCCCCc----eEEEEEechHHHHHHHHhhccceeeecCCc
Q 017670 204 TLVVLENLDPSYTSTVVEDLVWHAFKE-NCSAKMIPRVAFASPYFG----QSFVIFKTREVAELVVTKLEEGCLLLSNGR 278 (368)
Q Consensus 204 tlV~LqNLDps~ts~dVedLi~~a~ke-~c~AkmI~~~~ys~p~sG----~A~VIF~treaAdsAi~Kln~~cL~ls~GR 278 (368)
-||.+--|.|--|.+|+|=||..-++. .|+. .-+..+| +|||-|-.++..+.|..||+|+++ |.|
T Consensus 240 NVLFVCKLNPVTtDeDLeiIFSrFG~i~sceV-------IRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLI---DDr 309 (479)
T KOG0415|consen 240 NVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEV-------IRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLI---DDR 309 (479)
T ss_pred ceEEEEecCCcccccchhhHHhhcccceeeeE-------EecccccchhheeeeeecchhhHHHHHhhhcceee---ccc
Confidence 478899999999999999888886665 5655 2345555 899999999999999999999988 666
Q ss_pred e
Q 017670 279 P 279 (368)
Q Consensus 279 P 279 (368)
-
T Consensus 310 R 310 (479)
T KOG0415|consen 310 R 310 (479)
T ss_pred e
Confidence 5
No 73
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=76.16 E-value=2.7 Score=44.44 Aligned_cols=81 Identities=12% Similarity=0.059 Sum_probs=65.9
Q ss_pred HhcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCce
Q 017670 200 HEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRP 279 (368)
Q Consensus 200 ~E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRP 279 (368)
....-.+|+.||-.-++.+.|.|||-..+.++=.=..+...+ .-+.|.||..|..-...+.|+.-||.-|| ++.+
T Consensus 286 ~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~--g~skg~af~ey~dpsvtd~A~agLnGm~l---gd~~ 360 (500)
T KOG0120|consen 286 PDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSAT--GNSKGFAFCEYCDPSVTDQAIAGLNGMQL---GDKK 360 (500)
T ss_pred ccccchhhhccCcCccCHHHHHHHHHhcccchhheeeccccc--ccccceeeeeeeCCcchhhhhcccchhhh---cCce
Confidence 556667889999999999999999988777754443334333 46789999999999999999999999999 8899
Q ss_pred eeeccC
Q 017670 280 LLGSIG 285 (368)
Q Consensus 280 L~~S~g 285 (368)
||...+
T Consensus 361 lvvq~A 366 (500)
T KOG0120|consen 361 LVVQRA 366 (500)
T ss_pred eEeehh
Confidence 996554
No 74
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=75.12 E-value=1.8 Score=42.51 Aligned_cols=45 Identities=24% Similarity=0.399 Sum_probs=40.0
Q ss_pred CCCceEEEEEechHHHHHHHHhhccceeeecCCceeeeccCCCCCCCC
Q 017670 245 PYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLLGSIGTPCFTGK 292 (368)
Q Consensus 245 p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL~~S~g~~~~p~k 292 (368)
--.|-++|-|..-++|+.|+.-||+... +|||++|=..-.++|.-
T Consensus 108 hl~GNVYV~f~~Ee~ae~a~~~lnnRw~---~G~pi~ae~~pvT~~re 152 (260)
T KOG2202|consen 108 HLVGNVYVKFRSEEDAEAALEDLNNRWY---NGRPIHAELSPVTDFRE 152 (260)
T ss_pred hhhhhhhhhcccHHHHHHHHHHHcCccc---cCCcceeeecCcCchhh
Confidence 4468999999999999999999999999 99999988877777654
No 75
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=73.67 E-value=6.1 Score=41.81 Aligned_cols=66 Identities=12% Similarity=0.062 Sum_probs=47.3
Q ss_pred EEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhcccee
Q 017670 205 LVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCL 272 (368)
Q Consensus 205 lV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL 272 (368)
.+++.-+--..+..||++||.+-+.- +--.|.+.-...-.-|-|||.|.||++|+.|+.-|-|-..
T Consensus 36 KlfVgqIprt~sE~dlr~lFe~yg~V--~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~kt 101 (510)
T KOG0144|consen 36 KLFVGQIPRTASEKDLRELFEKYGNV--YEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKT 101 (510)
T ss_pred hheeccCCccccHHHHHHHHHHhCce--eEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccc
Confidence 45666666677778888888774432 2222444545556778999999999999999999887654
No 76
>PF08075 NOPS: NOPS (NUC059) domain; InterPro: IPR012975 This domain is found C-terminal to 1 or 2 IPR000504 from INTERPRO domains [] in NONA and PSP1 proteins.; PDB: 3SDE_B.
Probab=72.49 E-value=0.99 Score=34.88 Aligned_cols=20 Identities=25% Similarity=0.737 Sum_probs=14.8
Q ss_pred ccccCCCCCcchhhcccchh
Q 017670 318 STSHCSQPNSLEYDMAIEWS 337 (368)
Q Consensus 318 STSHCSQPNtiEYdmA~eW~ 337 (368)
.-=|-+||||.||++|+-|.
T Consensus 33 ~~PRFA~pgsfE~eyg~RWK 52 (52)
T PF08075_consen 33 QGPRFAQPGSFEFEYGMRWK 52 (52)
T ss_dssp S-SEE--TTSHHHHHHHHHH
T ss_pred cCCCcCCCCCcchhhccccC
Confidence 34678999999999999993
No 77
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=72.31 E-value=4.3 Score=40.02 Aligned_cols=85 Identities=25% Similarity=0.231 Sum_probs=60.3
Q ss_pred cccEEEEecCCCCCCchHHHHHHHH-Hhhccceecc--cCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCc
Q 017670 202 HGTLVVLENLDPSYTSTVVEDLVWH-AFKENCSAKM--IPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGR 278 (368)
Q Consensus 202 ~GtlV~LqNLDps~ts~dVedLi~~-a~ke~c~Akm--I~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GR 278 (368)
+.+.||+..|- +||-|-|-| ||=---..+- ||..--+..|-|-+||-|--+|+|..||..||+.=| .||
T Consensus 9 ~KrtlYVGGla-----deVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL---~Gr 80 (298)
T KOG0111|consen 9 QKRTLYVGGLA-----DEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESEL---FGR 80 (298)
T ss_pred cceeEEeccch-----HHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhh---cce
Confidence 45788988773 556555555 4433222222 333333449999999999999999999999999999 999
Q ss_pred eeeeccCCCCCCCCCC
Q 017670 279 PLLGSIGTPCFTGKQS 294 (368)
Q Consensus 279 PL~~S~g~~~~p~k~s 294 (368)
-+.--.+.|.-.+.-|
T Consensus 81 tirVN~AkP~kikegs 96 (298)
T KOG0111|consen 81 TIRVNLAKPEKIKEGS 96 (298)
T ss_pred eEEEeecCCccccCCC
Confidence 9987777776655533
No 78
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=72.25 E-value=7.9 Score=37.28 Aligned_cols=83 Identities=16% Similarity=0.155 Sum_probs=61.7
Q ss_pred HhcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCce
Q 017670 200 HEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRP 279 (368)
Q Consensus 200 ~E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRP 279 (368)
.+.-.++|+..+--+|.-.++.-.+++.++--..-++ .|.--..-.-|+|||-|-+.+.|..|-.-||+=+| .|+=
T Consensus 46 ~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rl-sRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl---~e~l 121 (214)
T KOG4208|consen 46 QEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRL-SRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLL---MEHL 121 (214)
T ss_pred cCCccceeecccccchhHHHHhhhhhhcCCeeEEEEe-ecccccCCcCceEEEEeccHHHHHHHHHHhhhhhh---hhhe
Confidence 3445789999999999999999888887543222222 12222234557899999999999999999999988 8898
Q ss_pred eeeccCC
Q 017670 280 LLGSIGT 286 (368)
Q Consensus 280 L~~S~g~ 286 (368)
|.|..=-
T Consensus 122 L~c~vmp 128 (214)
T KOG4208|consen 122 LECHVMP 128 (214)
T ss_pred eeeEEeC
Confidence 8887543
No 79
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=71.48 E-value=1.9 Score=41.11 Aligned_cols=78 Identities=22% Similarity=0.145 Sum_probs=66.6
Q ss_pred hHHHHHHHHhcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccce
Q 017670 192 WEERIRVAHEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGC 271 (368)
Q Consensus 192 WEe~lr~A~E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~c 271 (368)
|.-..+.-....+.+.++|+---+.--|+.|.|...+++ -++ . -..+.|+|-|.+.+.|-.|+.+|++-=
T Consensus 88 ~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~-~~~-----~----~~~~~~~v~Fs~~~da~ra~~~l~~~~ 157 (216)
T KOG0106|consen 88 DSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEV-TYV-----D----ARRNFAFVEFSEQEDAKRALEKLDGKK 157 (216)
T ss_pred hhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCC-chh-----h----hhccccceeehhhhhhhhcchhccchh
Confidence 766667777889999999998888888999999998887 333 1 167899999999999999999999998
Q ss_pred eeecCCceeee
Q 017670 272 LLLSNGRPLLG 282 (368)
Q Consensus 272 L~ls~GRPL~~ 282 (368)
| +|++|..
T Consensus 158 ~---~~~~l~~ 165 (216)
T KOG0106|consen 158 L---NGRRISV 165 (216)
T ss_pred h---cCceeee
Confidence 8 8999886
No 80
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=66.71 E-value=8.5 Score=40.32 Aligned_cols=74 Identities=22% Similarity=0.232 Sum_probs=55.6
Q ss_pred HhcccEEEEecCCCCCCchHH-HHHHHHHhhccceecccCCc--ccCCCCCceEEEEEechHHHHHHHHhhccceeeecC
Q 017670 200 HEHGTLVVLENLDPSYTSTVV-EDLVWHAFKENCSAKMIPRV--AFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSN 276 (368)
Q Consensus 200 ~E~GtlV~LqNLDps~ts~dV-edLi~~a~ke~c~AkmI~~~--~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~ 276 (368)
+.-=..||+..+-+ |+ ||.||.||.-----|-|+-+ +...-|-|-|||.|---|+|.-|+..+|+..| +
T Consensus 110 LaiMcRvYVGSIsf-----El~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~ml---G 181 (544)
T KOG0124|consen 110 LAIMCRVYVGSISF-----ELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQML---G 181 (544)
T ss_pred HHHhHheeeeeeEE-----EechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccc---c
Confidence 33345678776543 44 48999999876555556532 22237889999999999999999999999977 9
Q ss_pred Cceee
Q 017670 277 GRPLL 281 (368)
Q Consensus 277 GRPL~ 281 (368)
||-+.
T Consensus 182 GRNiK 186 (544)
T KOG0124|consen 182 GRNIK 186 (544)
T ss_pred Ccccc
Confidence 99876
No 81
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=65.49 E-value=5.6 Score=40.37 Aligned_cols=67 Identities=18% Similarity=0.157 Sum_probs=54.5
Q ss_pred cccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCceee
Q 017670 202 HGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLL 281 (368)
Q Consensus 202 ~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL~ 281 (368)
.-|.+-+.|+-|.-|+.|++..|-.-+- +|+... -.+.+||-|-..++|-.||+-||+.-+ +|.||-
T Consensus 77 ~stkl~vgNis~tctn~ElRa~fe~ygp------viecdi----vkdy~fvh~d~~eda~~air~l~~~~~---~gk~m~ 143 (346)
T KOG0109|consen 77 ASTKLHVGNISPTCTNQELRAKFEKYGP------VIECDI----VKDYAFVHFDRAEDAVEAIRGLDNTEF---QGKRMH 143 (346)
T ss_pred CccccccCCCCccccCHHHhhhhcccCC------ceeeee----ecceeEEEEeeccchHHHHhccccccc---ccceee
Confidence 4688999999999999999988765321 233222 357899999999999999999999977 999974
No 82
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=64.74 E-value=13 Score=35.84 Aligned_cols=62 Identities=26% Similarity=0.363 Sum_probs=50.7
Q ss_pred cccEEEEecCCCCCCchHHHHHHHH--HhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhcccee
Q 017670 202 HGTLVVLENLDPSYTSTVVEDLVWH--AFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCL 272 (368)
Q Consensus 202 ~GtlV~LqNLDps~ts~dVedLi~~--a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL 272 (368)
...+++++|+....+++..++|+.+ +|++ ++||+. -.|-|||-|.+.-.|..|..-++..-+
T Consensus 145 pn~ilf~~niP~es~~e~l~~lf~qf~g~ke---ir~i~~------~~~iAfve~~~d~~a~~a~~~lq~~~i 208 (221)
T KOG4206|consen 145 PNNILFLTNIPSESESEMLSDLFEQFPGFKE---IRLIPP------RSGIAFVEFLSDRQASAAQQALQGFKI 208 (221)
T ss_pred CceEEEEecCCcchhHHHHHHHHhhCcccce---eEeccC------CCceeEEecchhhhhHHHhhhhcccee
Confidence 4568899999999999999999988 5554 556654 357999999999999999998887654
No 83
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=63.40 E-value=19 Score=36.52 Aligned_cols=78 Identities=22% Similarity=0.250 Sum_probs=56.8
Q ss_pred HhcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhcccee-----ee
Q 017670 200 HEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCL-----LL 274 (368)
Q Consensus 200 ~E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL-----~l 274 (368)
.|..|-+.+-=|-...|-+|++-||-.++..-- +|.| +.-...-.-|+.||-|-+.++|+.||.-||.-.| =+
T Consensus 38 ~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiES-cKLv-RDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKV 115 (360)
T KOG0145|consen 38 DESKTNLIVNYLPQNMTQDELRSLFGSIGEIES-CKLV-RDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKV 115 (360)
T ss_pred CcccceeeeeecccccCHHHHHHHhhcccceee-eeee-eccccccccccceeeecChHHHHHHHhhhcceeeccceEEE
Confidence 345566666667778999999999999876422 2333 2334456778999999999999999998886554 45
Q ss_pred cCCce
Q 017670 275 SNGRP 279 (368)
Q Consensus 275 s~GRP 279 (368)
|.-||
T Consensus 116 SyARP 120 (360)
T KOG0145|consen 116 SYARP 120 (360)
T ss_pred EeccC
Confidence 66677
No 84
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=62.56 E-value=5.6 Score=42.63 Aligned_cols=97 Identities=15% Similarity=0.222 Sum_probs=63.3
Q ss_pred ccccCCChHHHHHHHHhcccEEEEecCCCC------------------CCchHHH-----HHHHHHhhccceec-ccCCc
Q 017670 185 KWFKELPWEERIRVAHEHGTLVVLENLDPS------------------YTSTVVE-----DLVWHAFKENCSAK-MIPRV 240 (368)
Q Consensus 185 kWfK~lPWEe~lr~A~E~GtlV~LqNLDps------------------~ts~dVe-----dLi~~a~ke~c~Ak-mI~~~ 240 (368)
.|.+.+-=-+.+..|...+-.+-++|++|. |.+++.. .=|++-..|.|.+. -|.|+
T Consensus 404 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~i~t~C~lL~nMFdpstete~n~d~eI~edV~Eec~k~g~v~hi 483 (549)
T KOG0147|consen 404 TAISALLLLAKLASAAQFNGVVRVRSVDPADASPAFDIPTQCLLLSNMFDPSTETEPNWDQEIREDVIEECGKHGKVCHI 483 (549)
T ss_pred hhhhHHHhccccchHHhhcCCcCccccCccccccccCCccHHHHHhhcCCcccccCcchhhHHHHHHHHHHHhcCCeeEE
Confidence 444444444555555555655667788877 3333221 12223333445221 24566
Q ss_pred ccCCCCC-ceEEEEEechHHHHHHHHhhccceeeecCCceeeeccC
Q 017670 241 AFASPYF-GQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLLGSIG 285 (368)
Q Consensus 241 ~ys~p~s-G~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL~~S~g 285 (368)
.+ ++|+ |.-||-|.+.++|..|++-|+..-. +||=+++++-
T Consensus 484 ~v-d~ns~g~VYvrc~s~~~A~~a~~alhgrWF---~gr~Ita~~~ 525 (549)
T KOG0147|consen 484 FV-DKNSAGCVYVRCPSAEAAGTAVKALHGRWF---AGRMITAKYL 525 (549)
T ss_pred EE-ccCCCceEEEecCcHHHHHHHHHHHhhhhh---ccceeEEEEe
Confidence 66 4555 9999999999999999999999988 9999888765
No 85
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=58.93 E-value=21 Score=36.91 Aligned_cols=78 Identities=22% Similarity=0.284 Sum_probs=60.2
Q ss_pred HHHhcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCc---------ccCC---CCCceEEEEEechHHHHHHHH
Q 017670 198 VAHEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRV---------AFAS---PYFGQSFVIFKTREVAELVVT 265 (368)
Q Consensus 198 ~A~E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~---------~ys~---p~sG~A~VIF~treaAdsAi~ 265 (368)
.+.-.+|-|||+||-+-+|-+|+++++.. |.. |.+. -|.+ -.-|-|+..|-.++.-+-|+.
T Consensus 129 ~~~~~Nt~VYVsgLP~DiT~dE~~~~~sK-----cGi--I~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ 201 (382)
T KOG1548|consen 129 PEPKVNTSVYVSGLPLDITVDEFAEVMSK-----CGI--IMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIK 201 (382)
T ss_pred cccccCceEEecCCCCcccHHHHHHHHHh-----cce--EeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHH
Confidence 45678999999999999999999999864 322 2222 1222 456799999999999999999
Q ss_pred hhccceeeecCCceeeeccC
Q 017670 266 KLEEGCLLLSNGRPLLGSIG 285 (368)
Q Consensus 266 Kln~~cL~ls~GRPL~~S~g 285 (368)
=|++.-| .|+-|--.++
T Consensus 202 ilDe~~~---rg~~~rVerA 218 (382)
T KOG1548|consen 202 ILDEDEL---RGKKLRVERA 218 (382)
T ss_pred HhCcccc---cCcEEEEehh
Confidence 9999988 6887754443
No 86
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=56.09 E-value=22 Score=36.95 Aligned_cols=87 Identities=20% Similarity=0.183 Sum_probs=57.2
Q ss_pred hcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCcee
Q 017670 201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 280 (368)
Q Consensus 201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL 280 (368)
..++-||+.||-+.-|.+++++.|-.-|--+ .-. |+.-.+..-+...|||.|.+.+++.+||..= -+++ +||-|
T Consensus 286 ~~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik-~~~-I~vr~~~~~~~~fgFV~f~~~~~~~~~i~As---p~~i-g~~kl 359 (419)
T KOG0116|consen 286 ADGLGIFVKNLPPDATPAELEEVFKQFGPIK-EGG-IQVRSPGGKNPCFGFVEFENAAAVQNAIEAS---PLEI-GGRKL 359 (419)
T ss_pred ecccceEeecCCCCCCHHHHHHHHhhccccc-ccc-eEEeccCCCcCceEEEEEeecchhhhhhhcC---cccc-CCeeE
Confidence 3444599999999999999999988733321 111 2222244444478999999999999998754 2333 77766
Q ss_pred eeccCCCCCCCCCCccccce
Q 017670 281 LGSIGTPCFTGKQSKFVGHL 300 (368)
Q Consensus 281 ~~S~g~~~~p~k~s~f~GHl 300 (368)
. +=.|.+.|-||.
T Consensus 360 ~-------Veek~~~~~g~~ 372 (419)
T KOG0116|consen 360 N-------VEEKRPGFRGNG 372 (419)
T ss_pred E-------EEeccccccccc
Confidence 5 334455555554
No 87
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=54.58 E-value=22 Score=38.17 Aligned_cols=69 Identities=22% Similarity=0.234 Sum_probs=54.1
Q ss_pred HhcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCC-CCCceE--EEEEechHHHHHHHHhhccceeeecC
Q 017670 200 HEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFAS-PYFGQS--FVIFKTREVAELVVTKLEEGCLLLSN 276 (368)
Q Consensus 200 ~E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~-p~sG~A--~VIF~treaAdsAi~Kln~~cL~ls~ 276 (368)
--+-+.|.|.||-..||=--+.|-|+++++-. |.+ --.|.+ -|-|.+-++|+.|+.-||..-| +
T Consensus 533 arKa~qIiirNlP~dfTWqmlrDKfre~G~v~----------yadime~GkskGVVrF~s~edAEra~a~Mngs~l---~ 599 (608)
T KOG4212|consen 533 ARKACQIIIRNLPFDFTWQMLRDKFREIGHVL----------YADIMENGKSKGVVRFFSPEDAERACALMNGSRL---D 599 (608)
T ss_pred cccccEEEEecCCccccHHHHHHHHHhcccee----------hhhhhccCCccceEEecCHHHHHHHHHHhccCcc---c
Confidence 44556799999999999888888888766533 322 233444 5999999999999999999999 9
Q ss_pred Cceee
Q 017670 277 GRPLL 281 (368)
Q Consensus 277 GRPL~ 281 (368)
||-+-
T Consensus 600 Gr~I~ 604 (608)
T KOG4212|consen 600 GRNIK 604 (608)
T ss_pred Cceee
Confidence 99764
No 88
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=53.18 E-value=56 Score=27.08 Aligned_cols=68 Identities=16% Similarity=0.178 Sum_probs=51.7
Q ss_pred HHHHHHHHhcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCC--CCCceEEEEEechHHHHHHHHhh
Q 017670 193 EERIRVAHEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFAS--PYFGQSFVIFKTREVAELVVTKL 267 (368)
Q Consensus 193 Ee~lr~A~E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~--p~sG~A~VIF~treaAdsAi~Kl 267 (368)
|-.++...+.++++.+ .|+..+-.||...|...|+-++.. +..-+ +..=+|+|-|..-..|.....+|
T Consensus 12 EK~~~~~e~~n~y~F~--V~~~anK~eIK~AvE~lf~VkV~~-----VnT~~~~~~~KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 12 EKAMNLIEKENKLTFI--VDRRATKPDIKRAVEELFDVKVEK-----VNTLITPKGEKKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred HHHHHHHHhCCEEEEE--ECCCCCHHHHHHHHHHHhCCceEE-----EEeEEcCCCcEEEEEEeCCCCcHHHHHHhh
Confidence 5555555556766654 789999999999999999988776 33333 33449999999999998887776
No 89
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=52.56 E-value=30 Score=34.36 Aligned_cols=67 Identities=12% Similarity=0.073 Sum_probs=52.3
Q ss_pred cEEEEecCCCCCCchHHHHHHHH-HhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhcccee
Q 017670 204 TLVVLENLDPSYTSTVVEDLVWH-AFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCL 272 (368)
Q Consensus 204 tlV~LqNLDps~ts~dVedLi~~-a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL 272 (368)
|.+.++.|---+.+-||-.|||. -+=|.|--||-..- +.+-.--|||.|.+...|..|+.-||.+..
T Consensus 35 RTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~--~~~~~pvaFatF~s~q~A~aamnaLNGvrF 102 (284)
T KOG1457|consen 35 RTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKG--DQVCKPVAFATFTSHQFALAAMNALNGVRF 102 (284)
T ss_pred ceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCC--CccccceEEEEecchHHHHHHHHHhcCeee
Confidence 56889999999999999999998 55677776553322 112234599999999999999999999866
No 90
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=51.49 E-value=14 Score=39.43 Aligned_cols=106 Identities=19% Similarity=0.166 Sum_probs=72.8
Q ss_pred EEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCC---CCCceEEEEEechHHHHHHHHhhccceeeecCCceee
Q 017670 205 LVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFAS---PYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLL 281 (368)
Q Consensus 205 lV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~---p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL~ 281 (368)
.+||.||.|++|++|++-+|-++ + .+++. -.+|+|||=+..-.-|-.|+.-++.-.= + -|.++-
T Consensus 3 klyignL~p~~~psdl~svfg~a------k-----~~~~g~fl~k~gyafvd~pdq~wa~kaie~~sgk~e-l-qGkr~e 69 (584)
T KOG2193|consen 3 KLYIGNLSPQVTPSDLESVFGDA------K-----IPGSGQFLVKSGYAFVDCPDQQWANKAIETLSGKVE-L-QGKRQE 69 (584)
T ss_pred cccccccCCCCChHHHHHHhccc------c-----CCCCcceeeecceeeccCCchhhhhhhHHhhchhhh-h-cCceee
Confidence 57999999999999999998876 2 56655 5789999999999999999998876533 2 566665
Q ss_pred eccCCCCCCCCCCccccceehhhHHHHHHHHHHhhhccccCCCCCcchhhc
Q 017670 282 GSIGTPCFTGKQSKFVGHLALDKLKFQMQREMREAVSTSHCSQPNSLEYDM 332 (368)
Q Consensus 282 ~S~g~~~~p~k~s~f~GHl~i~k~r~q~qrEmr~AVSTSHCSQPNtiEYdm 332 (368)
-.-.+|+++.+-- +-|-++--|.|-||-+- -..||-|.|--|
T Consensus 70 ---~~~sv~kkqrsrk--~Qirnippql~wevld~----Ll~qyg~ve~~e 111 (584)
T KOG2193|consen 70 ---VEHSVPKKQRSRK--IQIRNIPPQLQWEVLDS----LLAQYGTVENCE 111 (584)
T ss_pred ---ccchhhHHHHhhh--hhHhcCCHHHHHHHHHH----HHhccCCHhHhh
Confidence 3445666633221 33444434556666553 345666555433
No 91
>PF02617 ClpS: ATP-dependent Clp protease adaptor protein ClpS; InterPro: IPR003769 In the bacterial cytosol, ATP-dependent protein degradation is performed by several different chaperone-protease pairs, including ClpAP. ClpS directly influences the ClpAP machine by binding to the N-terminal domain of the chaperone ClpA. The degradation of ClpAP substrates, both SsrA-tagged proteins and ClpA itself, is specifically inhibited by ClpS. ClpS modifies ClpA substrate specificity, potentially redirecting degradation by ClpAP toward aggregated proteins []. ClpS is a small alpha/beta protein that consists of three alpha-helices connected to three antiparallel beta-strands []. The protein has a globular shape, with a curved layer of three antiparallel alpha-helices over a twisted antiparallel beta-sheet. Dimerization of ClpS may occur through its N-terminal domain. This short extended N-terminal region in ClpS is followed by the central seven-residue beta-strand, which is flanked by two other beta-strands in a small beta-sheet. ; GO: 0030163 protein catabolic process; PDB: 3O2O_B 1MBU_D 3O2B_C 2WA9_D 3O1F_A 2W9R_A 1MG9_A 1MBX_C 2WA8_C 1R6O_D ....
Probab=50.70 E-value=4.3 Score=32.11 Aligned_cols=69 Identities=29% Similarity=0.342 Sum_probs=42.3
Q ss_pred CCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCceeeecc
Q 017670 212 DPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLLGSI 284 (368)
Q Consensus 212 Dps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL~~S~ 284 (368)
|.--|-+.|-+.+.++++ |+-......+..--..|+|.|...+++.|+....+|...= =..|.||.+++
T Consensus 14 De~ht~~~Vi~~L~~~~~--~s~~~A~~~a~~v~~~G~avv~~~~~e~ae~~~~~l~~~g--~~~~~PL~~ti 82 (82)
T PF02617_consen 14 DEVHTFEQVIDVLRRVFG--CSEEQARQIAMEVHREGRAVVGTGSREEAEEYAEKLQRAG--RDSGHPLRATI 82 (82)
T ss_dssp -SSSBHHHHHHHHHHHC-----HHHHHHHHHHHHHHSEEEEEEEEHHHHHHHHHHHHHHH--HHTT---EEEE
T ss_pred CCCCCHHHHHHHHHHHHC--CCHHHHHHHHHHHhHcCCEeeeeCCHHHHHHHHHHHHHHh--hccCCCeEEeC
Confidence 444455677888888873 3322222222222457999999999999999999887653 12688998763
No 92
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=49.87 E-value=37 Score=38.39 Aligned_cols=90 Identities=18% Similarity=0.147 Sum_probs=64.3
Q ss_pred cccccccCCCh--HHHHHHHHhcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHH
Q 017670 182 DRSKWFKELPW--EERIRVAHEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREV 259 (368)
Q Consensus 182 d~skWfK~lPW--Ee~lr~A~E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~trea 259 (368)
++-|.+++||= -|.| .=-.|.|.|.-|+-.++-.|+.++|-+-+. .-...| +++.|-|||.--+|.+
T Consensus 401 ereRr~kglP~I~pd~i---sV~SrTLwvG~i~k~v~e~dL~~~feefGe-iqSi~l-------i~~R~cAfI~M~~Rqd 469 (894)
T KOG0132|consen 401 ERERRKKGLPTIPPDHI---SVCSRTLWVGGIPKNVTEQDLANLFEEFGE-IQSIIL-------IPPRGCAFIKMVRRQD 469 (894)
T ss_pred ccccccccCCCCCCcce---eEeeeeeeeccccchhhHHHHHHHHHhccc-ceeEee-------ccCCceeEEEEeehhH
Confidence 34466666653 1222 123588999999999999999998876443 223323 4678999999999999
Q ss_pred HHHHHHhhccceeeecCCceeeeccC
Q 017670 260 AELVVTKLEEGCLLLSNGRPLLGSIG 285 (368)
Q Consensus 260 AdsAi~Kln~~cL~ls~GRPL~~S~g 285 (368)
|+.|+.+|++.-+ .++-+.-.-|
T Consensus 470 A~kalqkl~n~kv---~~k~Iki~Wa 492 (894)
T KOG0132|consen 470 AEKALQKLSNVKV---ADKTIKIAWA 492 (894)
T ss_pred HHHHHHHHhcccc---cceeeEEeee
Confidence 9999999999877 6666543333
No 93
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=46.90 E-value=34 Score=25.43 Aligned_cols=20 Identities=20% Similarity=0.253 Sum_probs=16.9
Q ss_pred CCCceEEEEEechHHHHHHH
Q 017670 245 PYFGQSFVIFKTREVAELVV 264 (368)
Q Consensus 245 p~sG~A~VIF~treaAdsAi 264 (368)
+..-.+++.|.++.+|+.||
T Consensus 34 ~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 34 ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred CCCcEEEEEECCHHHHHhhC
Confidence 34557999999999999986
No 94
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=45.91 E-value=7.9 Score=38.08 Aligned_cols=77 Identities=14% Similarity=0.105 Sum_probs=59.4
Q ss_pred HHHhcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCC
Q 017670 198 VAHEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNG 277 (368)
Q Consensus 198 ~A~E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~G 277 (368)
+|-|.-+.||++||.-+++.+=|+|||-+|+- ++.-.||..-=+++. -|||-|+.------|+.=+|..-| .|
T Consensus 4 aaae~drtl~v~n~~~~v~eelL~ElfiqaGP--V~kv~ip~~~d~~~k--Fa~v~f~~E~sv~~a~~L~ng~~l---~~ 76 (267)
T KOG4454|consen 4 AAAEMDRTLLVQNMYSGVSEELLSELFIQAGP--VYKVGIPSGQDQEQK--FAYVFFPNENSVQLAGQLENGDDL---EE 76 (267)
T ss_pred CCcchhhHHHHHhhhhhhhHHHHHHHhhccCc--eEEEeCCCCccCCCc--eeeeecccccchhhhhhhcccchh---cc
Confidence 35677788999999999999999999988874 333456666555555 799999987777778887777777 78
Q ss_pred ceee
Q 017670 278 RPLL 281 (368)
Q Consensus 278 RPL~ 281 (368)
+|+-
T Consensus 77 ~e~q 80 (267)
T KOG4454|consen 77 DEEQ 80 (267)
T ss_pred chhh
Confidence 8754
No 95
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=45.22 E-value=25 Score=38.67 Aligned_cols=76 Identities=16% Similarity=0.172 Sum_probs=57.7
Q ss_pred HhcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCce
Q 017670 200 HEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRP 279 (368)
Q Consensus 200 ~E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRP 279 (368)
.+-.-+|||.||---||--.+.+||-.-+++-.++ -|-++ -..|||-|.|-+.|...++-|+++.-=.+|++=
T Consensus 441 ~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~-WmDkI------KShCyV~yss~eEA~atr~AlhnV~WP~sNPK~ 513 (718)
T KOG2416|consen 441 KEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF-WMDKI------KSHCYVSYSSVEEAAATREALHNVQWPPSNPKH 513 (718)
T ss_pred CCccceEeeecccccchHHHHHHHHhhccCchHHH-HHHHh------hcceeEecccHHHHHHHHHHHhccccCCCCCce
Confidence 34567999999999999999999998777666665 33322 236899999999999999999998664445554
Q ss_pred eee
Q 017670 280 LLG 282 (368)
Q Consensus 280 L~~ 282 (368)
|.+
T Consensus 514 L~a 516 (718)
T KOG2416|consen 514 LIA 516 (718)
T ss_pred eEe
Confidence 443
No 96
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=43.15 E-value=82 Score=33.42 Aligned_cols=77 Identities=10% Similarity=0.151 Sum_probs=59.3
Q ss_pred HHHHHHHhcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhcccee
Q 017670 194 ERIRVAHEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCL 272 (368)
Q Consensus 194 e~lr~A~E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL 272 (368)
|.++.--..=-.||+..++|-+...||.-.| +||++...++...-++- .-|-|..|+.|...-.-+.||..+|=-=|
T Consensus 201 D~vqeeAk~fnRiYVaSvHpDLSe~DiKSVF-EAFG~I~~C~LAr~pt~-~~HkGyGfiEy~n~qs~~eAiasMNlFDL 277 (544)
T KOG0124|consen 201 DMVQEEAKKFNRIYVASVHPDLSETDIKSVF-EAFGEIVKCQLARAPTG-RGHKGYGFIEYNNLQSQSEAIASMNLFDL 277 (544)
T ss_pred HHHHHHHHhhheEEeeecCCCccHHHHHHHH-HhhcceeeEEeeccCCC-CCccceeeEEeccccchHHHhhhcchhhc
Confidence 3333333334569999999999999998655 78998777776665554 68999999999999999999999884333
No 97
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=43.01 E-value=84 Score=32.24 Aligned_cols=73 Identities=10% Similarity=0.100 Sum_probs=54.4
Q ss_pred cEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCceee
Q 017670 204 TLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLL 281 (368)
Q Consensus 204 tlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL~ 281 (368)
..|.|.-|.+..+.++|+.-|..-+..+..- |+ +.-.+.-+-|+|||.|...-+--.|.+..+.-.| |||-++
T Consensus 102 ~TLFv~RLnydT~EskLrreF~~YG~Ikrir-lV-~d~vTgkskGYAFIeye~erdm~~AYK~adG~~I---dgrri~ 174 (335)
T KOG0113|consen 102 KTLFVARLNYDTSESKLRREFEKYGPIKRIR-LV-RDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKI---DGRRIL 174 (335)
T ss_pred ceeeeeeccccccHHHHHHHHHhcCcceeEE-Ee-eecccCCccceEEEEeccHHHHHHHHHhccCcee---cCcEEE
Confidence 4678888999999999998887766655443 22 2334567789999999999999999988875544 777644
No 98
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=42.33 E-value=26 Score=39.43 Aligned_cols=57 Identities=25% Similarity=0.262 Sum_probs=44.3
Q ss_pred EEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhh
Q 017670 205 LVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKL 267 (368)
Q Consensus 205 lV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kl 267 (368)
+|.||||-..-...||+-.|. +|+.-=-+ +|.-.---|.||+.|.|-|+|.-||.|=
T Consensus 4 IIRLqnLP~tAga~DIR~FFS-GL~IPdGg-----VHIIGGe~GeaFI~FsTDeDARlaM~kd 60 (944)
T KOG4307|consen 4 IIRLQNLPMTAGASDIRTFFS-GLKIPDGG-----VHIIGGEEGEAFIGFSTDEDARLAMTKD 60 (944)
T ss_pred EEEecCCcccccchHHHHhhc-ccccCCCc-----eEEecccccceEEEecccchhhhhhhhc
Confidence 689999999999999997764 33322223 5555677899999999999999988763
No 99
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=39.91 E-value=82 Score=24.92 Aligned_cols=54 Identities=19% Similarity=0.188 Sum_probs=39.4
Q ss_pred EEEEecCCCCCCchHHHHHHHHHhhc--cceecccCCcccCCCCCceEEEEEechHHHHHHHHhh
Q 017670 205 LVVLENLDPSYTSTVVEDLVWHAFKE--NCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKL 267 (368)
Q Consensus 205 lV~LqNLDps~ts~dVedLi~~a~ke--~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kl 267 (368)
.|+|..+|- ++..||..-|.+-|.+ -+...- -+=.+|-|+|.+.+.|.+||..|
T Consensus 7 avhirGvd~-lsT~dI~~y~~~y~~~~~~~~IEW--------IdDtScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 7 AVHIRGVDE-LSTDDIKAYFSEYFDEEGPFRIEW--------IDDTSCNVVFKDEETAARALVAL 62 (62)
T ss_pred eEEEEcCCC-CCHHHHHHHHHHhcccCCCceEEE--------ecCCcEEEEECCHHHHHHHHHcC
Confidence 578888875 8889999888776332 222222 33458999999999999999865
No 100
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=35.80 E-value=27 Score=36.97 Aligned_cols=61 Identities=18% Similarity=0.152 Sum_probs=43.2
Q ss_pred cEEEEecCCCCCCchHHHHHHHH-HhhccceecccCCcccC--CCCCceEEEEEechHHHHHHHHhh
Q 017670 204 TLVVLENLDPSYTSTVVEDLVWH-AFKENCSAKMIPRVAFA--SPYFGQSFVIFKTREVAELVVTKL 267 (368)
Q Consensus 204 tlV~LqNLDps~ts~dVedLi~~-a~ke~c~AkmI~~~~ys--~p~sG~A~VIF~treaAdsAi~Kl 267 (368)
-.|.|..|-|.-|-+||-|.+-+ |..+..-. =|..+. .+++|.||+-|+..++|..|.-|-
T Consensus 281 dcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~g---VHmv~N~qGrPSGeAFIqm~nae~a~aaaqk~ 344 (508)
T KOG1365|consen 281 DCVRLRGLPYEATVEDILDFLGDFATDIRFQG---VHMVLNGQGRPSGEAFIQMRNAERARAAAQKC 344 (508)
T ss_pred CeeEecCCChhhhHHHHHHHHHHHhhhcccce---eEEEEcCCCCcChhhhhhhhhhHHHHHHHHHH
Confidence 46888889888888888877766 33333322 012222 399999999999999999987553
No 101
>KOG2559 consensus Predicted pseudouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=32.52 E-value=30 Score=34.71 Aligned_cols=123 Identities=20% Similarity=0.244 Sum_probs=83.4
Q ss_pred HhcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCce
Q 017670 200 HEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRP 279 (368)
Q Consensus 200 ~E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRP 279 (368)
.+-|+++-=+|.|- ++..-|+-+...+-.+--.| ..-.|-|=..|-||-+.|.+-|..-.+ .+-|
T Consensus 129 r~Dgri~~~~n~dh-Vs~~ri~~vla~lq~shq~a-----------~f~~~nvDl~tqEAyElA~RGl~Rp~~---~s~~ 193 (318)
T KOG2559|consen 129 RIDGRIKKSENIDH-VSKHRIEKVLARLQSSHQSA-----------SFRHANVDLETQEAYELARRGLPRPQL---PSSQ 193 (318)
T ss_pred CccceEeeecccch-hhHHHHHHHHHHHHHHHHHH-----------HHHhcCCCchhHHHHHHHHccCCCcCC---CCCc
Confidence 46799999999998 88888988877654433333 112344667899999999999888866 8888
Q ss_pred eeeccCCCCCCCCCCccccceehhhHHHHHHHHHHhhh--------ccccCCCCCcchhh-cccchhhhHHH
Q 017670 280 LLGSIGTPCFTGKQSKFVGHLALDKLKFQMQREMREAV--------STSHCSQPNSLEYD-MAIEWSLLQER 342 (368)
Q Consensus 280 L~~S~g~~~~p~k~s~f~GHl~i~k~r~q~qrEmr~AV--------STSHCSQPNtiEYd-mA~eW~Llqek 342 (368)
++-++-..-|-.+.-++.=| |+. ..|++.|+-| +++||+|=---.+. |.+|=.||+.+
T Consensus 194 ivygI~l~~F~~P~F~le~q-c~~----Etqe~Lr~LVh~igl~L~T~a~c~qlrr~r~g~F~~d~aLLr~q 260 (318)
T KOG2559|consen 194 IVYGIDLNWFRSPKFSLETQ-CSG----ETQEMLRQLVHHIGLNLGTEATCIQLRRQRFGPFGSDNALLRKQ 260 (318)
T ss_pred eEEEEeeeeecCCccEEEEe-ecc----ccHHHHHHHHHHHhhcccceeeeeeeeeeccCCCCccHHHHHHh
Confidence 88777666655443333222 222 3667777766 68999996554443 55666666654
No 102
>cd08205 RuBisCO_IV_RLP Ribulose bisphosphate carboxylase like proteins, Rubisco-Form IV. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions, like for example 2,3-diketo-5-methylthiopentyl-1-phosphate enolase or 5-methyl
Probab=30.67 E-value=76 Score=31.98 Aligned_cols=51 Identities=20% Similarity=0.230 Sum_probs=41.0
Q ss_pred CChHHHHHHH------H--h-cccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCccc
Q 017670 190 LPWEERIRVA------H--E-HGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAF 242 (368)
Q Consensus 190 lPWEe~lr~A------~--E-~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~y 242 (368)
+|||||++.. . | .++.+|+-|+.-+ + +|+.+.-..|-+.-+.|-|+....|
T Consensus 175 ~~~eER~~~v~~av~~a~~~TG~~~~y~~nit~~-~-~e~i~~a~~a~~~Gad~vmv~~~~~ 234 (367)
T cd08205 175 APFEERVRACMEAVRRANEETGRKTLYAPNITGD-P-DELRRRADRAVEAGANALLINPNLV 234 (367)
T ss_pred CCHHHHHHHHHHHHHHHHHhhCCcceEEEEcCCC-H-HHHHHHHHHHHHcCCCEEEEecccc
Confidence 7999998765 2 2 3669999999866 3 8888888889899999988887766
No 103
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=29.75 E-value=2.4e+02 Score=23.00 Aligned_cols=70 Identities=14% Similarity=0.172 Sum_probs=47.4
Q ss_pred HHHHHHHHhcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhh
Q 017670 193 EERIRVAHEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKL 267 (368)
Q Consensus 193 Ee~lr~A~E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kl 267 (368)
|-+++...+.++.+. .+|+..+-.||...|...|+-++.. ++-..+ .++.=+|+|-+..-..|..+-.+|
T Consensus 5 EKs~~~~e~~n~y~F--~V~~~anK~eIK~avE~lf~VkV~~--Vnt~~~-~~~~KKA~VtL~~g~~a~~va~k~ 74 (77)
T TIGR03636 5 EKAMNLIEKENKLTF--IVDRKATKGDIKRAVEKLFDVKVEK--VNTLIT-PRGEKKAYVKLAEEYAAEEIASRL 74 (77)
T ss_pred HHHHHHHHhCCEEEE--EECCCCCHHHHHHHHHHHhCCceEE--EEeEEc-CCCceEEEEEECCCCcHHHHHHhh
Confidence 334444333465444 5899999999999999999887665 111111 245569999998888777766655
No 104
>PRK00033 clpS ATP-dependent Clp protease adaptor protein ClpS; Reviewed
Probab=29.06 E-value=92 Score=26.54 Aligned_cols=69 Identities=25% Similarity=0.224 Sum_probs=44.6
Q ss_pred EEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCceeeecc
Q 017670 205 LVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLLGSI 284 (368)
Q Consensus 205 lV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL~~S~ 284 (368)
.|.|-|=|+. |=+-|-+++..+|.. +..-.......--+.|+|-|...+++.|+.-..++ .|-||.|+.
T Consensus 29 ~ViL~NDd~n-tmd~Vv~vL~~vf~~--s~~~A~~iml~vH~~G~avv~~~~~e~AE~~~~~l--------~~~~L~~~i 97 (100)
T PRK00033 29 KVLLHNDDYT-PMEFVVYVLQKFFGY--DRERATQIMLEVHNEGKAVVGVCTREVAETKVEQV--------HQHGLLCTM 97 (100)
T ss_pred EEEEEcCCCC-CHHHHHHHHHHHHCC--CHHHHHHHHHHHhcCCcEEEEEEcHHHHHHHHHHH--------HcCCCeEEE
Confidence 3566564432 334455777777743 22222223333467899999999999999999998 566777654
No 105
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=28.82 E-value=22 Score=36.24 Aligned_cols=37 Identities=22% Similarity=0.386 Sum_probs=33.5
Q ss_pred eEEEEEechHHHHHHHHhhccceeeecCCceeeeccCCCC
Q 017670 249 QSFVIFKTREVAELVVTKLEEGCLLLSNGRPLLGSIGTPC 288 (368)
Q Consensus 249 ~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL~~S~g~~~ 288 (368)
++++-|.+.++|+.+|.-.++..+ |||.|-|+.|+..
T Consensus 127 s~yITy~~~eda~rci~~v~g~~~---dg~~lka~~gttk 163 (327)
T KOG2068|consen 127 SVYITYEEEEDADRCIDDVDGFVD---DGRALKASLGTTK 163 (327)
T ss_pred cccccccchHhhhhHHHHhhhHHh---hhhhhHHhhCCCc
Confidence 699999999999999999999876 9999999988764
No 106
>PF13041 PPR_2: PPR repeat family
Probab=27.77 E-value=45 Score=23.15 Aligned_cols=31 Identities=19% Similarity=0.268 Sum_probs=28.0
Q ss_pred CCcchhhcccchhhhHHHHHHHHHHHHHHHH
Q 017670 325 PNSLEYDMAIEWSLLQERLDCAWKKLYEQQE 355 (368)
Q Consensus 325 PNtiEYdmA~eW~Llqek~~~~w~~L~k~~~ 355 (368)
||++-|...|.++.-+.+.+.+|+.+.+-+.
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~ 31 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKK 31 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 8999999999999999999999999877553
No 107
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=26.91 E-value=2.1e+02 Score=26.18 Aligned_cols=68 Identities=18% Similarity=0.214 Sum_probs=51.2
Q ss_pred HHHHHHHHhcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCc--eEEEEEechHHHHHHHHhh
Q 017670 193 EERIRVAHEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFG--QSFVIFKTREVAELVVTKL 267 (368)
Q Consensus 193 Ee~lr~A~E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG--~A~VIF~treaAdsAi~Kl 267 (368)
|-.|+.-.+.++++.+ +|+..+-.+|...|...|+-.+.. +-.-+++.| .|+|-|..-.+|..+..+|
T Consensus 73 EKa~~~~E~~N~yvF~--Vd~kAnK~qIK~AVEklf~VkV~k-----VNTli~p~g~KKA~V~L~~~~~aidva~ki 142 (145)
T PTZ00191 73 EKAMKKIEDNNTLVFI--VDQRANKTQIKKAVEKLYDVKVVK-----VNTLITPDGLKKAYIRLSPDVDALDVANKI 142 (145)
T ss_pred HHHHHHHhhCCEEEEE--EcCCCCHHHHHHHHHHHhCCeeEE-----EEeEEcCCCceEEEEEECCCCcHHHHHHhh
Confidence 6667665667888886 788899999999999999998877 444444446 9999998777665555554
No 108
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=26.02 E-value=49 Score=33.17 Aligned_cols=70 Identities=14% Similarity=0.205 Sum_probs=49.2
Q ss_pred cccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCccc-----------CCCCCceEEEEEechHHHHHHHHhhccc
Q 017670 202 HGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAF-----------ASPYFGQSFVIFKTREVAELVVTKLEEG 270 (368)
Q Consensus 202 ~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~y-----------s~p~sG~A~VIF~treaAdsAi~Kln~~ 270 (368)
.--||||+|+-|-+...-+++|+.+-+...+-= .-|-... -..++-..-|-|.++..|-...--||+.
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvy-lqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~ 151 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVY-LQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNT 151 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEE-ecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCC
Confidence 345899999999999999999998655442211 1111111 1244456678999999999999888877
Q ss_pred ee
Q 017670 271 CL 272 (368)
Q Consensus 271 cL 272 (368)
-+
T Consensus 152 ~I 153 (278)
T KOG3152|consen 152 PI 153 (278)
T ss_pred cc
Confidence 66
No 109
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=25.87 E-value=1.3e+02 Score=34.17 Aligned_cols=69 Identities=13% Similarity=0.060 Sum_probs=50.6
Q ss_pred cEEEEecCCCCCCchHHHHHHHHH---hhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCcee
Q 017670 204 TLVVLENLDPSYTSTVVEDLVWHA---FKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 280 (368)
Q Consensus 204 tlV~LqNLDps~ts~dVedLi~~a---~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL 280 (368)
|||-.+|+---+|=+||-|.|..- =.-.|.- --=+.-++|.|-|-|-+++.|.+|.--|+..-| .+|-+
T Consensus 868 ~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r-----~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i---~nr~V 939 (944)
T KOG4307|consen 868 RVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIR-----RNDDGVPTGECMVAFESQEEARRASMDLDGQKI---RNRVV 939 (944)
T ss_pred eEEEecCCCccccHHHHHHHhcccccCCCceeEe-----ecCCCCcccceeEeecCHHHHHhhhhccccCcc---cceeE
Confidence 599999999999999999888762 1111211 122337899999999999999999988776655 44443
No 110
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=24.87 E-value=1.1e+02 Score=28.33 Aligned_cols=38 Identities=26% Similarity=0.324 Sum_probs=26.5
Q ss_pred CCCceEEEEEechHHHHHHHHhhc--cceeeecCCceeeeccC
Q 017670 245 PYFGQSFVIFKTREVAELVVTKLE--EGCLLLSNGRPLLGSIG 285 (368)
Q Consensus 245 p~sG~A~VIF~treaAdsAi~Kln--~~cL~ls~GRPL~~S~g 285 (368)
+..++..|+|.+.++|..|...|. ..-+ .|..|-+-+|
T Consensus 29 ~sFrRi~v~f~~~~~A~~~r~~l~~~~~~~---~g~~l~~yf~ 68 (184)
T PF04847_consen 29 KSFRRIRVVFESPESAQRARQLLHWDGTSF---NGKRLRVYFG 68 (184)
T ss_dssp TTTTEEEEE-SSTTHHHHHHHTST--TSEE---TTEE-EEE--
T ss_pred CCCCEEEEEeCCHHHHHHHHHHhccccccc---CCCceEEEEc
Confidence 788999999999999999999998 3333 4444444444
No 111
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=23.31 E-value=2.9e+02 Score=23.35 Aligned_cols=91 Identities=12% Similarity=0.134 Sum_probs=59.6
Q ss_pred HHHHHHHhcccEEEEecCCCCCCchHHHHHHHHHhhccc--eecccCCcccCCCCCceEEEEEechHHHHHHHHhhccce
Q 017670 194 ERIRVAHEHGTLVVLENLDPSYTSTVVEDLVWHAFKENC--SAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGC 271 (368)
Q Consensus 194 e~lr~A~E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c--~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~c 271 (368)
.-++.|...|..+.|+-+-++ .--+-...+.+.+...+ ..=.|.+..|...+.-+.=++
T Consensus 15 ~l~~~a~~~~~~~V~RG~~~g-~~~~t~~~~~~l~~~~~~~~~v~IdP~~F~~y~I~~VPa~------------------ 75 (113)
T PF09673_consen 15 NLLKQAERAGVVVVFRGFPDG-SFKPTAKAIQELLRKDDPCPGVQIDPRLFRQYNITAVPAF------------------ 75 (113)
T ss_pred HHHHHHHhCCcEEEEECCCCC-CHHHHHHHHHHHhhccCCCcceeEChhHHhhCCceEcCEE------------------
Confidence 445677888999999999888 33333344444444443 346678888866665543322
Q ss_pred eeecCCceeeeccCCCCCCCCCCccccceehhh
Q 017670 272 LLLSNGRPLLGSIGTPCFTGKQSKFVGHLALDK 304 (368)
Q Consensus 272 L~ls~GRPL~~S~g~~~~p~k~s~f~GHl~i~k 304 (368)
++..+++..|.-...|.|..--..+|+++|+.
T Consensus 76 -V~~~~~~~~~~~~~~~~~~~~~~~~Gdvsl~~ 107 (113)
T PF09673_consen 76 -VVVKDRVCVCLSCGCCSPEDYDVVYGDVSLDY 107 (113)
T ss_pred -EEEcCcccccccCCcCCCCcceEEEccccHHH
Confidence 22244666677778888888888999999874
No 112
>PF11290 DUF3090: Protein of unknown function (DUF3090); InterPro: IPR021441 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=23.13 E-value=82 Score=29.57 Aligned_cols=51 Identities=20% Similarity=0.164 Sum_probs=39.5
Q ss_pred cCCCCCceEEEEEechHHHHHHHHhhccceeeecCCceeeeccCCCCCCCCCCcccccee
Q 017670 242 FASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLLGSIGTPCFTGKQSKFVGHLA 301 (368)
Q Consensus 242 ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL~~S~g~~~~p~k~s~f~GHl~ 301 (368)
.+...--.++.+|-|..+|.....+...+ +..|||.--==|.|-+|. ||+|
T Consensus 121 ~~~~~~~~~lrv~lt~~~ARafa~ra~~V---VaAGRP~CPlCg~PlDP~------GH~C 171 (171)
T PF11290_consen 121 DDDEEGPDALRVRLTPGQARAFARRAREV---VAAGRPPCPLCGEPLDPE------GHIC 171 (171)
T ss_pred cCCcCCCCeEEEEcCHHHHHHHHHHHHHH---HhCCCCCCCCCCCCCCCC------CCcC
Confidence 34455557999999999999999988775 569999765556776664 8876
No 113
>PF03438 Pneumo_NS1: Pneumovirus NS1 protein; InterPro: IPR005099 This non-structural protein is one of two found in pneumoviruses. The protein is about 140 amino acids in length. The NS1 protein appears to be important for efficient replication but not essential []. The NS1 protein has been shown by yeast two-hybrid to interact with the viral P protein []. This protein is also known as the 1C protein. It has also been shown that NS1 can potently inhibit transcription and RNA replication [].
Probab=21.60 E-value=36 Score=30.42 Aligned_cols=65 Identities=28% Similarity=0.331 Sum_probs=31.3
Q ss_pred EEechHHHHHHHH--hhccceeeecCCceeeeccCCCCCCCC---CCccccceehhhHHHHHHHHHHhhhccccCCCCCc
Q 017670 253 IFKTREVAELVVT--KLEEGCLLLSNGRPLLGSIGTPCFTGK---QSKFVGHLALDKLKFQMQREMREAVSTSHCSQPNS 327 (368)
Q Consensus 253 IF~treaAdsAi~--Kln~~cL~ls~GRPL~~S~g~~~~p~k---~s~f~GHl~i~k~r~q~qrEmr~AVSTSHCSQPNt 327 (368)
|.-|---|.++|+ |||...++- -++.| ..|.... ++.|+---.+.+.. =+-+.+--.||+|||-
T Consensus 35 illt~~lak~vihtiklngivfih----iitss--d~cp~~~ii~~~nfttmp~lqngg-----yiwel~elthc~q~ng 103 (136)
T PF03438_consen 35 ILLTNALAKSVIHTIKLNGIVFIH----IITSS--DFCPTNNIIVSSNFTTMPILQNGG-----YIWELMELTHCFQTNG 103 (136)
T ss_pred HHHHHHHHHhhheEEEeCCEEEEE----Eeecc--ccCCCCCeEEeccccccceeccCc-----eeeehhhhhhccCCCc
Confidence 4445556677776 444433321 12222 3332222 66666443333332 1222234579999996
Q ss_pred c
Q 017670 328 L 328 (368)
Q Consensus 328 i 328 (368)
+
T Consensus 104 l 104 (136)
T PF03438_consen 104 L 104 (136)
T ss_pred c
Confidence 5
No 114
>PF10859 DUF2660: Protein of unknown function (DUF2660); InterPro: IPR022589 This is a bacterial group of proteins with unknown function found in Rickettsiales.
Probab=21.46 E-value=73 Score=26.97 Aligned_cols=19 Identities=47% Similarity=0.838 Sum_probs=16.1
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 017670 338 LLQERLDCAWKKLYEQQEL 356 (368)
Q Consensus 338 Llqek~~~~w~~L~k~~~~ 356 (368)
-||||-+.+|+-||+--.-
T Consensus 39 tLqe~iElSWkFLYDiTe~ 57 (86)
T PF10859_consen 39 TLQERIELSWKFLYDITET 57 (86)
T ss_pred cHHHHHHHHHHHHHHHHHH
Confidence 4899999999999986544
No 115
>PRK05928 hemD uroporphyrinogen-III synthase; Reviewed
Probab=21.11 E-value=2.1e+02 Score=25.20 Aligned_cols=35 Identities=20% Similarity=0.452 Sum_probs=23.5
Q ss_pred ceEEEEEechHHHHHHHHhhccceeeecCCceeee
Q 017670 248 GQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLLG 282 (368)
Q Consensus 248 G~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL~~ 282 (368)
....|||+|..+++.++..+.+..+....+.+++|
T Consensus 52 ~~d~iiftS~~av~~~~~~~~~~~~~~~~~~~~~a 86 (249)
T PRK05928 52 GADWVIFTSKNAVEFLLSALKKKKLKWPKNKKYAA 86 (249)
T ss_pred CCCEEEEECHHHHHHHHHHHHhcCcCCCCCCEEEE
Confidence 45689999999999999887622221124555544
No 116
>PRK06252 methylcobalamin:coenzyme M methyltransferase; Validated
Probab=20.31 E-value=1.2e+02 Score=29.07 Aligned_cols=41 Identities=12% Similarity=0.183 Sum_probs=30.6
Q ss_pred CChHHHHHHHHhc--ccEEEEecCCC-----CCCchHHHHHHHHHhhc
Q 017670 190 LPWEERIRVAHEH--GTLVVLENLDP-----SYTSTVVEDLVWHAFKE 230 (368)
Q Consensus 190 lPWEe~lr~A~E~--GtlV~LqNLDp-----s~ts~dVedLi~~a~ke 230 (368)
+.|...|..|.+. +.+++..|+|| .-|.++|++-++++++.
T Consensus 259 ~d~~~dl~~~~~~~g~~~~i~Gnidp~~~l~~gt~eeI~~~v~~~l~~ 306 (339)
T PRK06252 259 IDEKVDVKTAKENVGDRAALIGNVSTSFTLLNGTPEKVKAEAKKCLED 306 (339)
T ss_pred cCCCCCHHHHHHHhCCCeEEEeccCcHHHhcCCCHHHHHHHHHHHHHc
Confidence 3566667777544 67999999999 45778888888887763
No 117
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=20.27 E-value=2.4e+02 Score=27.72 Aligned_cols=59 Identities=25% Similarity=0.225 Sum_probs=50.4
Q ss_pred EEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhcccee
Q 017670 205 LVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCL 272 (368)
Q Consensus 205 lV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL 272 (368)
.|.++.|-||-.=.|+.|-+++|+. -|+| ..| .-|..-|-|.++|+-.-||++|++.-.
T Consensus 117 RVvVsGLp~SgSWQDLKDHmReaGd-vCfa-----dv~---rDg~GvV~~~r~eDMkYAvr~ld~~~~ 175 (241)
T KOG0105|consen 117 RVVVSGLPPSGSWQDLKDHMREAGD-VCFA-----DVQ---RDGVGVVEYLRKEDMKYAVRKLDDQKF 175 (241)
T ss_pred eEEEecCCCCCchHHHHHHHHhhCC-eeee-----eee---cccceeeeeeehhhHHHHHHhhccccc
Confidence 5889999999999999999999975 6988 333 456788999999999999999998755
Done!