Query 017670
Match_columns 368
No_of_seqs 25 out of 27
Neff 2.8
Searched_HMMs 29240
Date Mon Mar 25 03:05:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017670.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017670hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3sde_A Paraspeckle component 1 99.6 1.6E-15 5.6E-20 133.9 10.3 153 203-365 96-249 (261)
2 4fxv_A ELAV-like protein 1; RN 99.2 1.1E-11 3.9E-16 96.7 6.5 93 190-287 6-98 (99)
3 4a8x_A RNA-binding protein wit 99.0 4.8E-10 1.6E-14 82.5 6.1 85 202-290 3-87 (88)
4 1x5t_A Splicing factor 3B subu 99.0 1.8E-09 6E-14 81.2 9.1 87 202-292 4-90 (96)
5 2dis_A Unnamed protein product 99.0 2.3E-09 8E-14 82.4 10.0 88 202-290 7-94 (109)
6 1x4g_A Nucleolysin TIAR; struc 99.0 3.4E-09 1.2E-13 82.2 10.8 95 187-292 9-103 (109)
7 2dnz_A Probable RNA-binding pr 99.0 1.7E-09 5.9E-14 81.1 8.5 88 201-293 3-90 (95)
8 2lxi_A RNA-binding protein 10; 99.0 2.5E-09 8.6E-14 81.9 9.4 81 204-287 2-82 (91)
9 2dhg_A TRNA selenocysteine ass 99.0 1.4E-09 5E-14 83.0 7.9 87 201-292 7-94 (104)
10 1whw_A Hypothetical protein ri 99.0 2.7E-09 9.3E-14 80.8 9.2 86 201-291 6-91 (99)
11 2jvr_A Nucleolar protein 3; RN 99.0 2.5E-09 8.4E-14 86.7 8.9 80 201-288 26-105 (111)
12 2cqb_A Peptidyl-prolyl CIS-tra 98.9 2.2E-09 7.6E-14 81.7 8.0 88 201-293 10-97 (102)
13 3ucg_A Polyadenylate-binding p 98.9 1.7E-09 5.8E-14 80.0 7.0 85 201-291 4-88 (89)
14 2d9p_A Polyadenylate-binding p 98.9 9.7E-10 3.3E-14 84.0 5.8 86 201-293 13-98 (103)
15 2cph_A RNA binding motif prote 98.9 4E-09 1.4E-13 80.7 9.2 88 201-292 13-101 (107)
16 1x5s_A Cold-inducible RNA-bind 98.9 3.6E-09 1.2E-13 80.5 8.8 87 201-292 10-96 (102)
17 2cpx_A Hypothetical protein FL 98.9 4.3E-09 1.5E-13 81.7 9.0 85 201-293 23-110 (115)
18 2cpe_A RNA-binding protein EWS 98.9 4.5E-09 1.5E-13 81.6 8.9 88 201-292 13-107 (113)
19 2dgo_A Cytotoxic granule-assoc 98.9 2.5E-09 8.7E-14 83.2 7.5 91 201-296 13-103 (115)
20 3mdf_A Peptidyl-prolyl CIS-tra 98.9 2.4E-09 8.3E-14 78.5 6.6 79 201-284 5-83 (85)
21 2kt5_A RNA and export factor-b 98.9 6.1E-09 2.1E-13 82.5 9.1 85 200-290 32-116 (124)
22 3p5t_L Cleavage and polyadenyl 98.9 1.1E-09 3.9E-14 82.5 4.6 85 204-292 2-87 (90)
23 3ex7_B RNA-binding protein 8A; 98.9 3.9E-09 1.3E-13 83.3 7.9 88 201-293 20-107 (126)
24 2dnm_A SRP46 splicing factor; 98.9 4.3E-09 1.5E-13 80.4 7.9 87 201-292 11-97 (103)
25 2dgp_A Bruno-like 4, RNA bindi 98.9 1.1E-08 3.6E-13 78.4 10.0 91 201-293 11-101 (106)
26 1oo0_B CG8781-PA, drosophila Y 98.9 4E-09 1.4E-13 81.5 7.7 86 201-291 24-109 (110)
27 2e5j_A Methenyltetrahydrofolat 98.9 3.9E-09 1.3E-13 80.3 7.4 79 201-289 17-95 (97)
28 1x4h_A RNA-binding protein 28; 98.9 7.4E-09 2.5E-13 79.6 9.0 88 200-292 12-105 (111)
29 3ulh_A THO complex subunit 4; 98.9 2.3E-09 7.7E-14 82.3 5.9 79 200-284 26-104 (107)
30 1p27_B RNA-binding protein 8A; 98.9 2.7E-09 9.1E-14 81.8 6.0 85 201-290 21-105 (106)
31 2kn4_A Immunoglobulin G-bindin 98.9 1E-08 3.5E-13 83.6 9.9 87 201-292 68-154 (158)
32 1fj7_A Nucleolin RBD1, protein 98.9 6.6E-09 2.3E-13 79.1 8.2 82 201-289 15-96 (101)
33 2do4_A Squamous cell carcinoma 98.9 3.5E-09 1.2E-13 80.5 6.6 83 202-290 16-98 (100)
34 2cpz_A CUG triplet repeat RNA- 98.9 4.1E-09 1.4E-13 82.2 7.1 88 202-294 24-111 (115)
35 2cqi_A Nucleolysin TIAR; RNA r 98.9 1.4E-08 4.9E-13 77.5 9.9 86 201-293 13-98 (103)
36 2ywk_A Putative RNA-binding pr 98.9 4E-09 1.4E-13 79.1 6.5 81 199-285 12-92 (95)
37 2cpf_A RNA binding motif prote 98.9 4.3E-09 1.5E-13 79.6 6.7 88 202-293 4-93 (98)
38 1x5u_A Splicing factor 3B subu 98.9 1.1E-08 3.7E-13 78.2 9.0 83 201-288 13-95 (105)
39 2x1f_A MRNA 3'-END-processing 98.9 9.1E-09 3.1E-13 77.9 8.5 82 203-289 2-83 (96)
40 3bs9_A Nucleolysin TIA-1 isofo 98.9 3.4E-09 1.1E-13 78.1 5.9 82 201-287 4-85 (87)
41 3md1_A Nuclear and cytoplasmic 98.9 4.2E-09 1.4E-13 76.9 6.3 79 204-287 2-80 (83)
42 1wi8_A EIF-4B, eukaryotic tran 98.9 7.7E-09 2.6E-13 79.4 8.0 85 202-292 14-98 (104)
43 1x4a_A Splicing factor, argini 98.9 1E-08 3.5E-13 79.3 8.8 82 201-290 20-101 (109)
44 2fc9_A NCL protein; structure 98.8 5.3E-09 1.8E-13 79.7 6.8 81 201-290 13-93 (101)
45 2la4_A Nuclear and cytoplasmic 98.8 6.5E-09 2.2E-13 79.2 7.3 85 192-287 16-100 (101)
46 2dgv_A HnRNP M, heterogeneous 98.8 6.8E-09 2.3E-13 77.4 7.2 83 201-290 6-88 (92)
47 2cq0_A Eukaryotic translation 98.8 2.8E-09 9.6E-14 81.5 5.2 88 201-293 13-100 (103)
48 2div_A TRNA selenocysteine ass 98.8 8.4E-09 2.9E-13 78.1 7.7 84 201-288 7-94 (99)
49 2cqc_A Arginine/serine-rich sp 98.8 5.2E-09 1.8E-13 78.2 6.4 80 201-285 13-92 (95)
50 2dnh_A Bruno-like 5, RNA bindi 98.8 6.8E-09 2.3E-13 79.4 7.0 86 201-292 13-101 (105)
51 2fy1_A RNA-binding motif prote 98.8 1.1E-08 3.7E-13 81.5 8.4 83 201-289 5-87 (116)
52 2dgs_A DAZ-associated protein 98.8 1.3E-08 4.3E-13 77.3 8.3 86 201-292 8-93 (99)
53 2lkz_A RNA-binding protein 5; 98.8 4.4E-09 1.5E-13 82.6 6.0 80 204-285 10-92 (95)
54 2cq3_A RNA-binding protein 9; 98.8 1.3E-08 4.6E-13 77.7 8.4 85 201-292 13-97 (103)
55 2e5h_A Zinc finger CCHC-type a 98.8 6.2E-09 2.1E-13 77.9 6.4 79 201-284 14-92 (94)
56 2e44_A Insulin-like growth fac 98.8 1.1E-08 3.8E-13 77.0 7.8 79 202-288 14-92 (96)
57 2do0_A HnRNP M, heterogeneous 98.8 7.1E-09 2.4E-13 80.3 6.7 85 201-291 13-97 (114)
58 2dnp_A RNA-binding protein 14; 98.8 1.7E-08 5.8E-13 75.6 8.6 79 201-292 7-85 (90)
59 1x4c_A Splicing factor, argini 98.8 1.3E-08 4.5E-13 79.2 8.2 80 202-293 14-98 (108)
60 1nu4_A U1A RNA binding domain; 98.8 6.5E-09 2.2E-13 78.2 6.2 81 200-287 5-88 (97)
61 2ki2_A SS-DNA binding protein 98.8 6.5E-09 2.2E-13 77.4 6.0 82 204-291 2-83 (90)
62 2jwn_A Embryonic polyadenylate 98.8 1.1E-08 3.9E-13 80.4 7.7 89 198-292 31-119 (124)
63 2cqh_A IGF-II mRNA-binding pro 98.8 9.2E-09 3.1E-13 77.3 6.7 80 201-292 6-87 (93)
64 2j76_E EIF-4B, EIF4B, eukaryot 98.8 5.5E-09 1.9E-13 80.4 5.6 84 198-287 14-97 (100)
65 3lqv_A PRE-mRNA branch site pr 98.8 8.1E-09 2.8E-13 80.3 6.4 82 199-288 4-85 (115)
66 2dgx_A KIAA0430 protein; RRM d 98.8 3E-08 1E-12 75.7 9.3 81 200-288 6-90 (96)
67 2cpi_A CCR4-NOT transcription 98.8 1.1E-08 3.9E-13 80.1 7.1 84 202-289 14-102 (111)
68 2dgw_A Probable RNA-binding pr 98.8 8.5E-09 2.9E-13 77.2 6.0 79 201-287 8-86 (91)
69 2hzc_A Splicing factor U2AF 65 98.8 2.6E-08 8.9E-13 73.3 8.5 72 201-283 4-85 (87)
70 2f3j_A RNA and export factor b 98.8 1.8E-08 6E-13 86.5 8.7 83 200-288 85-167 (177)
71 2fc8_A NCL protein; structure 98.8 6.7E-09 2.3E-13 79.0 5.4 84 201-292 13-96 (102)
72 2krb_A Eukaryotic translation 98.8 1.1E-08 3.7E-13 75.6 6.3 73 203-282 1-80 (81)
73 2dng_A Eukaryotic translation 98.8 9.9E-09 3.4E-13 78.7 6.2 85 201-292 13-97 (103)
74 2dgt_A RNA-binding protein 30; 98.8 3.4E-08 1.2E-12 74.2 9.0 78 201-291 8-85 (92)
75 2cpd_A Apobec-1 stimulating pr 98.8 3.4E-08 1.2E-12 75.2 9.1 79 201-291 13-92 (99)
76 1fjc_A Nucleolin RBD2, protein 98.8 7.5E-09 2.6E-13 78.0 5.4 79 200-288 13-91 (96)
77 2kxn_B Transformer-2 protein h 98.8 9.7E-09 3.3E-13 83.7 6.3 85 201-290 44-128 (129)
78 1p1t_A Cleavage stimulation fa 98.8 4.4E-09 1.5E-13 80.0 4.0 84 200-288 5-88 (104)
79 2ku7_A MLL1 PHD3-CYP33 RRM chi 98.8 2.3E-08 7.9E-13 79.3 8.1 78 202-284 62-139 (140)
80 1sjq_A Polypyrimidine tract-bi 98.8 3.5E-08 1.2E-12 80.4 9.3 83 201-292 14-96 (105)
81 2mss_A Protein (musashi1); RNA 98.8 1.9E-08 6.3E-13 72.7 6.8 73 206-284 2-74 (75)
82 2hvz_A Splicing factor, argini 98.8 2.9E-08 9.9E-13 75.6 8.2 76 204-289 1-76 (101)
83 1uaw_A Mouse-musashi-1; RNP-ty 98.7 9.3E-09 3.2E-13 74.2 5.2 75 204-284 1-75 (77)
84 2la6_A RNA-binding protein FUS 98.7 1E-08 3.5E-13 78.1 5.5 80 201-284 11-97 (99)
85 4f25_A Polyadenylate-binding p 98.7 1.2E-08 4.2E-13 80.6 6.1 79 203-288 5-83 (115)
86 2jrs_A RNA-binding protein 39; 98.7 1E-08 3.4E-13 80.7 5.5 85 198-287 21-105 (108)
87 2khc_A Testis-specific RNP-typ 98.7 1.6E-08 5.4E-13 79.0 6.5 79 201-284 38-116 (118)
88 1u6f_A Tcubp1, RNA-binding pro 98.7 2.7E-08 9.1E-13 79.7 7.9 87 201-292 40-126 (139)
89 3r27_A HnRNP L, heterogeneous 98.7 2.4E-08 8.2E-13 80.9 7.7 78 201-287 19-96 (100)
90 2dnq_A RNA-binding protein 4B; 98.7 4.2E-08 1.4E-12 73.5 8.4 79 201-292 6-84 (90)
91 1x5o_A RNA binding motif, sing 98.7 1.1E-08 3.9E-13 79.4 5.5 83 201-286 23-110 (114)
92 2lea_A Serine/arginine-rich sp 98.7 1.7E-08 5.7E-13 82.7 6.7 88 200-292 44-131 (135)
93 2dgu_A Heterogeneous nuclear r 98.7 4.2E-08 1.4E-12 75.4 8.4 79 201-292 9-87 (103)
94 2cqd_A RNA-binding region cont 98.7 4.8E-08 1.6E-12 76.3 8.9 82 201-288 15-96 (116)
95 1whx_A Hypothetical protein ri 98.7 2.5E-08 8.5E-13 78.8 7.3 74 202-286 9-82 (111)
96 1fje_B Nucleolin RBD12, protei 98.7 3.8E-08 1.3E-12 79.8 8.5 108 200-318 10-121 (175)
97 1h2v_Z 20 kDa nuclear CAP bind 98.7 2.1E-08 7.1E-13 82.2 6.8 90 198-292 34-123 (156)
98 3s8s_A Histone-lysine N-methyl 98.7 1.7E-08 5.7E-13 80.5 5.9 79 202-285 5-83 (110)
99 2wbr_A GW182, gawky, LD47780P; 98.7 4.6E-08 1.6E-12 79.1 8.4 72 203-285 7-78 (89)
100 2rs2_A Musashi-1, RNA-binding 98.7 3.9E-08 1.3E-12 77.2 7.5 92 193-290 15-106 (109)
101 2dh8_A DAZ-associated protein 98.7 2.7E-08 9.2E-13 76.2 6.4 86 201-292 14-99 (105)
102 3n9u_C Cleavage and polyadenyl 98.7 2.4E-08 8.3E-13 84.3 6.8 82 201-286 53-135 (156)
103 2i2y_A Fusion protein consists 98.7 6E-08 2E-12 79.0 8.7 78 200-287 70-147 (150)
104 3egn_A RNA-binding protein 40; 98.7 2.3E-08 7.9E-13 80.9 6.1 89 201-292 43-134 (143)
105 1x4e_A RNA binding motif, sing 98.7 1.2E-08 4E-13 75.3 3.9 79 201-284 3-81 (85)
106 2err_A Ataxin-2-binding protei 98.7 3.6E-08 1.2E-12 77.3 6.9 90 191-287 16-106 (109)
107 1wf1_A RNA-binding protein RAL 98.7 4.5E-08 1.5E-12 76.0 7.4 76 202-290 26-102 (110)
108 2cqp_A RNA-binding protein 12; 98.7 2.2E-08 7.5E-13 75.6 5.4 81 201-286 13-93 (98)
109 2cq1_A PTB-like protein L; RRM 98.7 4.2E-08 1.4E-12 78.0 7.0 83 201-292 13-95 (101)
110 2qfj_A FBP-interacting repress 98.7 6E-08 2E-12 80.6 8.2 92 196-292 118-209 (216)
111 2ek1_A RNA-binding protein 12; 98.7 2.2E-08 7.4E-13 75.1 5.0 79 202-285 14-92 (95)
112 1rk8_A CG8781-PA, CG8781-PA pr 98.7 2.5E-08 8.6E-13 83.1 5.9 87 201-292 70-156 (165)
113 2cq4_A RNA binding motif prote 98.7 1.3E-08 4.4E-13 79.3 3.8 81 200-286 22-102 (114)
114 3s7r_A Heterogeneous nuclear r 98.7 3.1E-08 1.1E-12 73.3 5.6 78 200-283 8-85 (87)
115 1x5p_A Negative elongation fac 98.7 9.8E-08 3.3E-12 72.6 8.5 81 202-295 14-94 (97)
116 1b7f_A Protein (SXL-lethal pro 98.7 6.6E-08 2.3E-12 77.1 7.9 108 202-318 2-111 (168)
117 2cpy_A RNA-binding protein 12; 98.6 2.4E-08 8.3E-13 78.6 5.2 80 201-286 13-92 (114)
118 2ytc_A PRE-mRNA-splicing facto 98.6 4E-08 1.4E-12 72.2 6.0 73 201-284 10-83 (85)
119 2cpj_A Non-POU domain-containi 98.6 5.7E-08 1.9E-12 73.9 6.9 78 201-289 13-90 (99)
120 1fxl_A Paraneoplastic encephal 98.6 5.2E-08 1.8E-12 77.1 7.0 107 203-318 2-110 (167)
121 2jvo_A Nucleolar protein 3; nu 98.6 5.5E-08 1.9E-12 76.7 7.0 78 198-288 26-103 (108)
122 1wg1_A KIAA1579 protein, homol 98.6 2.7E-08 9.1E-13 74.7 5.0 72 202-285 4-75 (88)
123 1wex_A Hypothetical protein (r 98.6 5.9E-08 2E-12 77.3 7.1 81 202-291 14-94 (104)
124 3md3_A Nuclear and cytoplasmic 98.6 4.5E-08 1.5E-12 77.4 6.2 81 201-286 85-165 (166)
125 1why_A Hypothetical protein ri 98.6 9E-08 3.1E-12 72.6 7.5 78 202-290 16-95 (97)
126 1wg5_A Heterogeneous nuclear r 98.6 4.5E-08 1.6E-12 75.9 5.9 80 201-286 13-92 (104)
127 2m2b_A RNA-binding protein 10; 98.6 4.5E-08 1.5E-12 78.8 6.1 83 201-288 21-108 (131)
128 2ad9_A Polypyrimidine tract-bi 98.6 5.6E-08 1.9E-12 80.5 6.8 84 201-293 29-112 (119)
129 1fje_B Nucleolin RBD12, protei 98.6 4.9E-08 1.7E-12 79.1 6.3 76 202-287 98-173 (175)
130 2nlw_A Eukaryotic translation 98.6 6.8E-08 2.3E-12 75.0 6.6 78 202-286 14-98 (105)
131 2a3j_A U1 small nuclear ribonu 98.6 1.2E-07 4E-12 78.3 8.4 78 201-286 27-108 (127)
132 3ns6_A Eukaryotic translation 98.6 2.2E-08 7.5E-13 77.4 3.7 80 202-286 5-91 (100)
133 1x4b_A Heterogeneous nuclear r 98.6 1E-07 3.5E-12 74.4 7.4 85 201-291 25-109 (116)
134 2g4b_A Splicing factor U2AF 65 98.6 1.7E-07 5.8E-12 75.2 8.9 109 201-318 2-116 (172)
135 1iqt_A AUF1, heterogeneous nuc 98.6 1E-07 3.5E-12 68.5 6.8 72 206-283 2-73 (75)
136 1wel_A RNA-binding protein 12; 98.6 1.8E-08 6.3E-13 80.1 2.7 80 200-285 22-101 (124)
137 2xnq_A Nuclear polyadenylated 98.6 1.4E-07 4.7E-12 72.7 7.4 78 196-286 15-93 (97)
138 3md3_A Nuclear and cytoplasmic 98.6 1.4E-07 4.6E-12 74.7 7.5 104 204-317 1-108 (166)
139 2lmi_A GRSF-1, G-rich sequence 98.6 6.1E-08 2.1E-12 75.5 5.4 78 201-284 9-88 (107)
140 2qfj_A FBP-interacting repress 98.6 1.6E-07 5.4E-12 78.0 8.1 85 198-287 23-107 (216)
141 3beg_B Splicing factor, argini 98.6 1.3E-07 4.6E-12 74.8 7.0 68 201-280 14-81 (115)
142 2dnn_A RNA-binding protein 12; 98.5 9.7E-08 3.3E-12 76.8 5.9 77 201-285 14-90 (109)
143 2cjk_A Nuclear polyadenylated 98.5 2.3E-07 7.9E-12 74.1 8.0 82 201-288 85-166 (167)
144 1s79_A Lupus LA protein; RRM, 98.5 1.4E-07 4.7E-12 74.5 6.5 76 201-283 9-84 (103)
145 1qm9_A Polypyrimidine tract-bi 98.5 1.8E-07 6.2E-12 77.6 7.5 78 202-288 119-197 (198)
146 1wez_A HnRNP H', FTP-3, hetero 98.5 3.7E-08 1.3E-12 77.1 3.1 78 201-286 13-90 (102)
147 2adc_A Polypyrimidine tract-bi 98.5 2E-07 6.8E-12 80.6 7.8 78 202-288 150-228 (229)
148 3smz_A Protein raver-1, ribonu 98.5 1.9E-07 6.4E-12 81.9 7.7 105 194-318 13-117 (284)
149 3nmr_A Cugbp ELAV-like family 98.5 1.3E-07 4.4E-12 75.6 6.1 81 202-285 94-174 (175)
150 2dnl_A Cytoplasmic polyadenyla 98.5 1.2E-07 4E-12 74.7 5.7 77 201-285 6-85 (114)
151 2yh0_A Splicing factor U2AF 65 98.5 2E-07 6.8E-12 76.4 7.3 82 202-288 3-88 (198)
152 2db1_A Heterogeneous nuclear r 98.5 8.1E-08 2.8E-12 76.6 4.6 77 201-283 15-93 (118)
153 2cqg_A TDP-43, TAR DNA-binding 98.5 2.2E-07 7.4E-12 71.0 6.8 84 199-289 11-94 (103)
154 1x4d_A Matrin 3; structural ge 98.5 1.4E-07 4.8E-12 75.7 6.0 76 202-286 14-90 (102)
155 2hgl_A HNRPF protein, heteroge 98.5 6.2E-08 2.1E-12 81.0 4.0 79 201-285 42-122 (136)
156 2kvi_A Nuclear polyadenylated 98.5 1.7E-07 6E-12 71.3 6.1 75 200-287 7-82 (96)
157 2g4b_A Splicing factor U2AF 65 98.5 1.2E-07 4.2E-12 76.1 5.4 78 203-285 94-171 (172)
158 2e5g_A U6 snRNA-specific termi 98.5 3.6E-07 1.2E-11 69.1 7.7 77 202-290 7-84 (94)
159 1x4f_A Matrin 3; structural ge 98.5 1.3E-07 4.4E-12 77.6 5.5 78 201-287 23-101 (112)
160 2yh0_A Splicing factor U2AF 65 98.5 2E-07 6.7E-12 76.5 6.1 83 201-288 112-194 (198)
161 2ghp_A U4/U6 snRNA-associated 98.5 2.9E-07 1E-11 81.0 7.7 86 198-288 205-291 (292)
162 3q2s_C Cleavage and polyadenyl 98.5 1.2E-07 4.2E-12 84.3 5.3 82 202-287 67-149 (229)
163 2diu_A KIAA0430 protein; struc 98.5 3.7E-07 1.3E-11 75.0 7.7 74 202-285 8-81 (96)
164 2lcw_A RNA-binding protein FUS 97.9 1.9E-08 6.4E-13 78.8 0.0 86 201-290 5-97 (116)
165 3tyt_A Heterogeneous nuclear r 98.5 2.8E-07 9.6E-12 80.2 7.3 74 202-285 3-77 (205)
166 3nmr_A Cugbp ELAV-like family 98.5 2.2E-07 7.5E-12 74.3 6.1 110 202-317 2-116 (175)
167 1b7f_A Protein (SXL-lethal pro 98.4 1.9E-07 6.5E-12 74.4 5.3 77 202-283 88-166 (168)
168 2hgn_A Heterogeneous nuclear r 98.4 1.4E-07 4.7E-12 79.3 4.1 82 199-288 42-123 (139)
169 2hgm_A HNRPF protein, heteroge 98.4 2.8E-07 9.6E-12 76.6 5.8 76 201-283 40-116 (126)
170 3smz_A Protein raver-1, ribonu 98.4 2.9E-07 1E-11 80.7 6.1 84 201-290 182-266 (284)
171 1qm9_A Polypyrimidine tract-bi 98.4 4.5E-07 1.5E-11 75.3 6.7 76 202-287 2-78 (198)
172 2dha_A FLJ20171 protein; RRM d 98.4 2.3E-07 7.9E-12 76.3 4.7 76 200-281 20-98 (123)
173 1l3k_A Heterogeneous nuclear r 98.4 4.1E-07 1.4E-11 74.4 5.8 86 201-292 102-187 (196)
174 1l3k_A Heterogeneous nuclear r 98.4 5.8E-07 2E-11 73.6 6.6 83 200-288 10-92 (196)
175 3pgw_S U1-70K; protein-RNA com 98.4 8.4E-07 2.9E-11 86.3 8.7 83 201-288 100-182 (437)
176 3tyt_A Heterogeneous nuclear r 98.4 9.5E-07 3.3E-11 76.9 8.1 71 202-278 122-193 (205)
177 2cjk_A Nuclear polyadenylated 98.4 8E-07 2.7E-11 71.0 7.0 95 202-303 2-98 (167)
178 4f02_A Polyadenylate-binding p 98.4 5.2E-07 1.8E-11 77.2 6.3 79 201-286 101-179 (213)
179 2adc_A Polypyrimidine tract-bi 98.3 1.4E-06 4.7E-11 75.4 8.8 77 201-287 32-109 (229)
180 2ghp_A U4/U6 snRNA-associated 98.3 1E-06 3.4E-11 77.6 7.9 97 202-303 116-221 (292)
181 4f02_A Polyadenylate-binding p 98.3 6.8E-07 2.3E-11 76.5 6.5 96 202-302 14-113 (213)
182 2xs2_A Deleted in azoospermia- 98.3 2.5E-07 8.5E-12 70.5 3.2 78 201-286 7-84 (102)
183 2bz2_A Negative elongation fac 98.3 9.7E-07 3.3E-11 71.3 6.7 77 200-289 36-112 (121)
184 2dit_A HIV TAT specific factor 98.3 2.4E-06 8.3E-11 67.1 8.7 78 203-288 15-102 (112)
185 1fxl_A Paraneoplastic encephal 98.3 9.1E-07 3.1E-11 70.0 5.9 73 202-279 87-159 (167)
186 3pgw_A U1-A; protein-RNA compl 98.3 1.6E-06 5.4E-11 75.9 8.0 80 200-286 6-88 (282)
187 2cq2_A Hypothetical protein LO 98.3 9E-07 3.1E-11 73.2 5.5 81 201-289 23-107 (114)
188 3pgw_A U1-A; protein-RNA compl 98.3 1.9E-06 6.4E-11 75.5 7.7 75 201-285 205-280 (282)
189 1wf0_A TDP-43, TAR DNA-binding 98.2 1.7E-06 5.7E-11 64.5 5.8 80 201-292 3-82 (88)
190 3sde_A Paraspeckle component 1 98.2 2.7E-06 9.1E-11 75.1 6.9 76 200-286 19-94 (261)
191 2pe8_A Splicing factor 45; RRM 98.2 4.1E-06 1.4E-10 66.8 7.0 82 202-287 7-93 (105)
192 3v4m_A Splicing factor U2AF 65 98.2 5.2E-06 1.8E-10 66.0 7.5 81 203-287 5-96 (105)
193 1sjr_A Polypyrimidine tract-bi 98.1 5.4E-06 1.9E-10 72.7 7.5 78 204-288 47-124 (164)
194 2e5i_A Heterogeneous nuclear r 98.1 7.2E-06 2.5E-10 68.1 7.4 73 205-288 27-102 (124)
195 3d2w_A TAR DNA-binding protein 98.1 9.9E-06 3.4E-10 61.7 7.4 80 197-288 5-84 (89)
196 2voo_A Lupus LA protein; RNA-b 98.0 8.8E-06 3E-10 70.5 6.7 80 199-285 105-184 (193)
197 3u1l_A PRE-mRNA-splicing facto 97.8 1.4E-05 4.8E-10 73.4 5.3 80 200-287 131-228 (240)
198 3ue2_A Poly(U)-binding-splicin 97.8 2.3E-05 8E-10 64.1 5.8 82 202-287 19-108 (118)
199 3zzy_A Polypyrimidine tract-bi 97.8 2.2E-05 7.4E-10 66.3 5.5 77 202-287 27-105 (130)
200 1jmt_A Splicing factor U2AF 35 97.7 0.00012 4E-09 58.0 7.2 38 244-284 65-102 (104)
201 1owx_A Lupus LA protein, SS-B, 97.6 6.3E-05 2.1E-09 63.2 5.1 73 200-281 15-89 (121)
202 3s6e_A RNA-binding protein 39; 97.5 0.00018 6E-09 58.7 7.1 75 203-285 7-90 (114)
203 3tht_A Alkylated DNA repair pr 97.5 0.00014 4.8E-09 69.9 7.0 78 200-285 15-96 (345)
204 2j8a_A Histone-lysine N-methyl 97.3 0.00026 8.8E-09 61.5 5.8 75 204-283 3-91 (136)
205 2d9o_A DNAJ (HSP40) homolog, s 97.3 0.00056 1.9E-08 54.5 7.3 68 213-292 27-94 (100)
206 3dxb_A Thioredoxin N-terminall 95.7 0.015 5.2E-07 49.8 5.6 82 202-287 123-212 (222)
207 2dnr_A Synaptojanin-1; RRM dom 94.8 0.062 2.1E-06 43.7 6.5 57 218-288 30-86 (91)
208 1ufw_A Synaptojanin 2; RNP dom 93.9 0.16 5.5E-06 41.7 7.1 64 205-282 17-89 (95)
209 1uw4_A UPF3X; nonsense mediate 91.9 0.31 1.1E-05 39.2 6.0 65 204-272 2-70 (91)
210 1whv_A Poly(A)-specific ribonu 88.0 0.47 1.6E-05 39.5 4.1 54 204-268 17-70 (100)
211 1wey_A Calcipressin 1; structu 86.3 1.8 6.3E-05 35.9 6.7 75 204-290 6-86 (104)
212 3ctr_A Poly(A)-specific ribonu 85.5 0.67 2.3E-05 38.6 3.7 56 204-270 7-62 (101)
213 2dhx_A Poly (ADP-ribose) polym 82.8 2 6.8E-05 35.9 5.4 66 201-274 6-78 (104)
214 2kn4_A Immunoglobulin G-bindin 77.1 1.6 5.4E-05 35.1 3.0 26 245-270 11-36 (158)
215 2l08_A Regulator of nonsense t 74.8 2.3 7.9E-05 34.8 3.4 66 203-272 9-78 (97)
216 2l9w_A U4/U6 snRNA-associated- 72.8 8.9 0.0003 32.8 6.6 75 201-283 19-95 (117)
217 2i2y_A Fusion protein consists 68.9 2 6.8E-05 34.5 1.8 38 245-286 11-49 (150)
218 3d45_A Poly(A)-specific ribonu 43.7 33 0.0011 34.2 5.9 54 204-268 441-494 (507)
219 1wwh_A Nucleoporin 35, nucleop 38.8 79 0.0027 26.6 6.6 59 213-282 30-90 (119)
220 3twe_A Alpha4H; unknown functi 32.5 54 0.0018 21.5 3.6 24 343-367 3-26 (27)
221 2egz_A 3-dehydroquinate dehydr 29.7 61 0.0021 28.7 4.8 44 194-237 99-144 (219)
222 4g3b_A Alpha4F3D; alpha helix, 29.5 66 0.0022 20.9 3.6 24 343-367 3-26 (26)
223 3oz7_A Phosphoglycerate kinase 27.7 54 0.0018 32.9 4.4 63 195-274 48-119 (417)
224 3j21_T 50S ribosomal protein L 25.0 1.7E+02 0.0058 23.2 6.1 68 193-267 14-83 (86)
225 1vq8_S 50S ribosomal protein L 20.4 2.1E+02 0.007 22.7 5.7 68 193-267 13-82 (85)
No 1
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.61 E-value=1.6e-15 Score=133.92 Aligned_cols=153 Identities=18% Similarity=0.259 Sum_probs=119.3
Q ss_pred ccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeee-cCCceee
Q 017670 203 GTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLL-SNGRPLL 281 (368)
Q Consensus 203 GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~l-s~GRPL~ 281 (368)
++.|||.||++.+|.+||+++|...+ .-..++++.. -+..+.|.|||.|.+.++|..||..||++++++ ..||||+
T Consensus 96 ~~~l~v~nl~~~~t~~~l~~~F~~~G-~i~~v~i~~~--~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~ 172 (261)
T 3sde_A 96 GAALTVKNLSPVVSNELLEQAFSQFG-PVEKAVVVVD--DRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVI 172 (261)
T ss_dssp SSEEEEESCCTTCCHHHHHHHHGGGS-CEEEEEEEEE--TTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCE
T ss_pred CCcccccCCCCCCCHHHHHHHHHhcC-CeEEEEeeeC--CCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEE
Confidence 67899999999999999999997654 5556666544 246778999999999999999999997776643 5699999
Q ss_pred eccCCCCCCCCCCccccceehhhHHHHHHHHHHhhhccccCCCCCcchhhcccchhhhHHHHHHHHHHHHHHHHHHHHHH
Q 017670 282 GSIGTPCFTGKQSKFVGHLALDKLKFQMQREMREAVSTSHCSQPNSLEYDMAIEWSLLQERLDCAWKKLYEQQELELKKL 361 (368)
Q Consensus 282 ~S~g~~~~p~k~s~f~GHl~i~k~r~q~qrEmr~AVSTSHCSQPNtiEYdmA~eW~Llqek~~~~w~~L~k~~~~El~k~ 361 (368)
.....+..+... .++-.+.+. +.-.+.--+..++++|++.||++++.|..+++...+++..|++++.++..||
T Consensus 173 v~~~~~~~~~~~---~~~~~~~~~----~~~~~~r~~~p~~~~pgs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l 245 (261)
T 3sde_A 173 VEPMEQFDDEDG---LPEKLMQKT----QQYHKEREQPPRFAQPGTFEFEYASRWKALDEMEKQQREQVDRNIREAKEKL 245 (261)
T ss_dssp EEECCCEESSSC---CCGGGSCCC----HHHHHHHTSCSEECCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EeeccccCccCC---Ccchhhhcc----hhhhhhccCCCCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 877765543321 122222221 2223333567899999999999999999999999999999999999999999
Q ss_pred Hhhh
Q 017670 362 KVKL 365 (368)
Q Consensus 362 ~a~l 365 (368)
.+.+
T Consensus 246 ~~~~ 249 (261)
T 3sde_A 246 EAEM 249 (261)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8765
No 2
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.23 E-value=1.1e-11 Score=96.74 Aligned_cols=93 Identities=23% Similarity=0.206 Sum_probs=69.5
Q ss_pred CChHHHHHHHHhcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhcc
Q 017670 190 LPWEERIRVAHEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEE 269 (368)
Q Consensus 190 lPWEe~lr~A~E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~ 269 (368)
+++......-+-+||.|||.||.+.+|.+||+++|...+.. ..++++ +...+..+-|.|||.|.+.++|+.||..||+
T Consensus 6 ~~~~~~~en~~~~gt~lfV~nLp~~~te~~L~~~F~~~G~I-~~v~i~-~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng 83 (99)
T 4fxv_A 6 IHHHHHHENLYFQGTNLIVNYLPQNMTQDELRSLFSSIGEV-ESAKLI-RDKVAGHSLGYGFVNYVTAKDAERAINTLNG 83 (99)
T ss_dssp ----------CCCCSEEEEESCCTTCCHHHHHHHHHTTSCE-EEEEEE-ECSSSCCEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred cccccccccccCCCCEEEEeCCCCCCCHHHHHHHHHhcCCE-EEeEee-ecCCCCcccccEEEEECCHHHHHHHHHHhCC
Confidence 45555666678899999999999999999999999876543 344443 2334466778999999999999999999999
Q ss_pred ceeeecCCceeeeccCCC
Q 017670 270 GCLLLSNGRPLLGSIGTP 287 (368)
Q Consensus 270 ~cL~ls~GRPL~~S~g~~ 287 (368)
..| +||+|..+.+.|
T Consensus 84 ~~~---~gr~l~V~~AkP 98 (99)
T 4fxv_A 84 LRL---QSKTIKVSYARP 98 (99)
T ss_dssp CEE---TTEECEEEECCB
T ss_pred CEE---CCEEEEEEEeeC
Confidence 887 999999877654
No 3
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.01 E-value=4.8e-10 Score=82.54 Aligned_cols=85 Identities=15% Similarity=0.142 Sum_probs=67.0
Q ss_pred cccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCceee
Q 017670 202 HGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLL 281 (368)
Q Consensus 202 ~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL~ 281 (368)
..+.|||.||.+.+|.+||+++|...+.. ..++++....-...+.|.|||.|.+.++|..|+..||+..+ +||+|.
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i-~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~l~ 78 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKI-KMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQI---DGQEIT 78 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCE-EEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEE---TTEECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCE-EEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeE---CCeEEE
Confidence 46889999999999999999999886543 33333322211123789999999999999999999999988 999999
Q ss_pred eccCCCCCC
Q 017670 282 GSIGTPCFT 290 (368)
Q Consensus 282 ~S~g~~~~p 290 (368)
.+...+.-|
T Consensus 79 v~~a~~~~~ 87 (88)
T 4a8x_A 79 ATAVLAPWP 87 (88)
T ss_dssp EEEECCCCC
T ss_pred EEECCCCCC
Confidence 888766544
No 4
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.00 E-value=1.8e-09 Score=81.18 Aligned_cols=87 Identities=16% Similarity=0.132 Sum_probs=71.1
Q ss_pred cccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCceee
Q 017670 202 HGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLL 281 (368)
Q Consensus 202 ~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL~ 281 (368)
.++.|||.||.+.+|.+||+++|...+...-.+++ +.......+.|.|||.|.+.++|+.||..||+..| +||+|.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i-~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~---~g~~l~ 79 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKI-MRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYL---CNRPIT 79 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEE-CCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEE---TTEECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEE-EEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEE---CCEEEE
Confidence 57899999999999999999999986654222133 33344567889999999999999999999999987 999999
Q ss_pred eccCCCCCCCC
Q 017670 282 GSIGTPCFTGK 292 (368)
Q Consensus 282 ~S~g~~~~p~k 292 (368)
...+.+..+..
T Consensus 80 v~~a~~~~~~~ 90 (96)
T 1x5t_A 80 VSYAFKKDSKG 90 (96)
T ss_dssp EEESCCCCCCC
T ss_pred EEEecccCCCC
Confidence 88887766554
No 5
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.00 E-value=2.3e-09 Score=82.44 Aligned_cols=88 Identities=13% Similarity=0.106 Sum_probs=71.6
Q ss_pred cccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCceee
Q 017670 202 HGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLL 281 (368)
Q Consensus 202 ~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL~ 281 (368)
.++.|||.||.+.+|.+||+++|...+..-..++++........+-|.|||.|.+.++|..||..||++-..+ +||+|.
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~-~g~~l~ 85 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQL-WGHQIA 85 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCB-TTBCCE
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCcee-cCCeEE
Confidence 4688999999999999999999999876455556665666666888999999999999999999997552223 899999
Q ss_pred eccCCCCCC
Q 017670 282 GSIGTPCFT 290 (368)
Q Consensus 282 ~S~g~~~~p 290 (368)
...+.+...
T Consensus 86 V~~a~~~~~ 94 (109)
T 2dis_A 86 VDWAEPEID 94 (109)
T ss_dssp EEESCSSCS
T ss_pred EEEcCCCCC
Confidence 887765443
No 6
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.99 E-value=3.4e-09 Score=82.22 Aligned_cols=95 Identities=17% Similarity=0.194 Sum_probs=78.2
Q ss_pred ccCCChHHHHHHHHhcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHh
Q 017670 187 FKELPWEERIRVAHEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTK 266 (368)
Q Consensus 187 fK~lPWEe~lr~A~E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~K 266 (368)
.+.+++++........++.|||.||.+.+|.+||+++|...+. --.++++.. -|.|||.|.+.++|+.||..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~-i~~v~i~~~-------~g~afV~f~~~~~a~~A~~~ 80 (109)
T 1x4g_A 9 TKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQ-IMEIRVFPE-------KGYSFVRFSTHESAAHAIVS 80 (109)
T ss_dssp SCSCCHHHHHHHSCSSCCEEEEECCSSCCCHHHHHHHHHHHSC-EEEEEEETT-------TTEEEEEESSHHHHHHHHHH
T ss_pred cccCCccccccCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCC-eEEEEEeCC-------CCEEEEEECCHHHHHHHHHH
Confidence 3457888877777888999999999999999999999998664 334444432 79999999999999999999
Q ss_pred hccceeeecCCceeeeccCCCCCCCC
Q 017670 267 LEEGCLLLSNGRPLLGSIGTPCFTGK 292 (368)
Q Consensus 267 ln~~cL~ls~GRPL~~S~g~~~~p~k 292 (368)
||...| +||+|....+.+.....
T Consensus 81 l~g~~~---~g~~l~v~~a~~~~~~~ 103 (109)
T 1x4g_A 81 VNGTTI---EGHVVKCYWGKESPDMT 103 (109)
T ss_dssp HTTCEE---TTEECEEECCCCCCSSC
T ss_pred cCCCEE---CCcEEEEEecCCCCCCC
Confidence 999877 99999988886654433
No 7
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.98 E-value=1.7e-09 Score=81.08 Aligned_cols=88 Identities=17% Similarity=0.138 Sum_probs=71.2
Q ss_pred hcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCcee
Q 017670 201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 280 (368)
Q Consensus 201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL 280 (368)
..++.|||.||.+.+|.+||+++|...+.. ...+++ ....+..+.|.|||.|.+.++|+.||..||+..| +||+|
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v-~~v~i~-~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~l 77 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKI-DNIVLM-KDSDTGRSKGYGFITFSDSECARRALEQLNGFEL---AGRPM 77 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCE-EEEEEE-CCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCS---SSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCE-eEEEEe-ecCCCCceeeEEEEEECCHHHHHHHHHHhCCCee---CCcEE
Confidence 357899999999999999999999876543 334333 3333467789999999999999999999999877 99999
Q ss_pred eeccCCCCCCCCC
Q 017670 281 LGSIGTPCFTGKQ 293 (368)
Q Consensus 281 ~~S~g~~~~p~k~ 293 (368)
......+..+...
T Consensus 78 ~V~~a~~~~~~~~ 90 (95)
T 2dnz_A 78 RVGHVTERLDGGS 90 (95)
T ss_dssp EEEESSCCCCCCC
T ss_pred EEEEcccccCCCC
Confidence 9888877665553
No 8
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=98.98 E-value=2.5e-09 Score=81.87 Aligned_cols=81 Identities=15% Similarity=0.102 Sum_probs=65.7
Q ss_pred cEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCceeeec
Q 017670 204 TLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLLGS 283 (368)
Q Consensus 204 tlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL~~S 283 (368)
++|+|.||.+.+|.+||+++|.+.|.+-..++++ +...+..+-|.|||-|.+.++|..||..++++.. -+||+|...
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~-~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~--~~gr~i~V~ 78 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLM-RNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLN--ILGQKVSMH 78 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSS-SCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEE--ETTEEEEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEE-ecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeE--ECCEEEEEE
Confidence 5899999999999999999999987444445444 3344567889999999999999999999877642 299999988
Q ss_pred cCCC
Q 017670 284 IGTP 287 (368)
Q Consensus 284 ~g~~ 287 (368)
.+.|
T Consensus 79 ~a~~ 82 (91)
T 2lxi_A 79 YSDP 82 (91)
T ss_dssp CCCS
T ss_pred EcCC
Confidence 7654
No 9
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.97 E-value=1.4e-09 Score=82.96 Aligned_cols=87 Identities=14% Similarity=0.191 Sum_probs=72.1
Q ss_pred hcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccce-eeecCCce
Q 017670 201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGC-LLLSNGRP 279 (368)
Q Consensus 201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~c-L~ls~GRP 279 (368)
..++.|||.||.+.+|.+||+++|...|..-..++++... +..+.|.|||.|.+.++|+.||..||... | +||+
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~--~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~---~g~~ 81 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ--TGVSKGYGFVKFTDELEQKRALTECQGAVGL---GSKP 81 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT--TCCEEEEEEEEESCHHHHHHHHHHTTTCCSS---SSSC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC--CCCccceEEEEECCHHHHHHHHHHccCCccc---CCEe
Confidence 3578899999999999999999999955555566655443 56788999999999999999999999987 7 9999
Q ss_pred eeeccCCCCCCCC
Q 017670 280 LLGSIGTPCFTGK 292 (368)
Q Consensus 280 L~~S~g~~~~p~k 292 (368)
|......+.....
T Consensus 82 l~v~~a~~~~~~~ 94 (104)
T 2dhg_A 82 VRLSVAIPKASRV 94 (104)
T ss_dssp CCCCBCCCCCSCC
T ss_pred EEEEEccCCCcCC
Confidence 9988876655444
No 10
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.97 E-value=2.7e-09 Score=80.78 Aligned_cols=86 Identities=16% Similarity=0.034 Sum_probs=69.9
Q ss_pred hcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCcee
Q 017670 201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 280 (368)
Q Consensus 201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL 280 (368)
..++.|||.||.+.+|.+||+++|...+.. ...+++ ....+..+.|.|||.|.+.++|+.||..||...| +||+|
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i-~~v~i~-~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~l 80 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPL-SELHYP-IDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVF---QGRML 80 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCE-EEEECC-CCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEES---SSCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCE-eEEEEE-ecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEE---CCcEE
Confidence 357899999999999999999999876643 333333 3333567889999999999999999999999877 99999
Q ss_pred eeccCCCCCCC
Q 017670 281 LGSIGTPCFTG 291 (368)
Q Consensus 281 ~~S~g~~~~p~ 291 (368)
......+..+.
T Consensus 81 ~V~~a~~~~~~ 91 (99)
T 1whw_A 81 HVLPSTIKKEA 91 (99)
T ss_dssp EEEECCCCSTT
T ss_pred EEEEcCCCccc
Confidence 98888766554
No 11
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=98.95 E-value=2.5e-09 Score=86.73 Aligned_cols=80 Identities=13% Similarity=0.107 Sum_probs=67.2
Q ss_pred hcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCcee
Q 017670 201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 280 (368)
Q Consensus 201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL 280 (368)
..++.|||.||.+..|.+||+++|...+.+-..++++. ..+.|.|||.|.+.++|+.||.+||+..| +||+|
T Consensus 26 ~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~-----~~~rGfaFV~F~~~e~A~~Ai~~lng~~l---~Gr~i 97 (111)
T 2jvr_A 26 AKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT-----RDFDGTGALEFPSEEILVEALERLNNIEF---RGSVI 97 (111)
T ss_dssp CCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS-----CSSSCCEEEEESSHHHHHHHHHHTTTEEE---TTEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc-----CCCCCEEEEEECCHHHHHHHHHHcCCCEE---CCeEE
Confidence 35789999999999999999999999874555555432 24779999999999999999999999988 99999
Q ss_pred eeccCCCC
Q 017670 281 LGSIGTPC 288 (368)
Q Consensus 281 ~~S~g~~~ 288 (368)
........
T Consensus 98 ~V~~a~~~ 105 (111)
T 2jvr_A 98 TVERDDNP 105 (111)
T ss_dssp EEEESCC-
T ss_pred EEEECCCC
Confidence 98776544
No 12
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.95 E-value=2.2e-09 Score=81.68 Aligned_cols=88 Identities=16% Similarity=0.146 Sum_probs=71.1
Q ss_pred hcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCcee
Q 017670 201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 280 (368)
Q Consensus 201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL 280 (368)
..++.|||.||.+.+|.+||+++|...+.. ...++ +....+..+.|.|||.|.+.++|+.||..||+..| +||+|
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i-~~v~i-~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~---~g~~l 84 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDI-TDIQI-PLDYETEKHRGFAFVEFELAEDAAAAIDNMNESEL---FGRTI 84 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTTTSCC-CCEEC-CCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEE---TTEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhccCCE-EEEEE-EecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEE---CCcEE
Confidence 357899999999999999999999885543 23333 33334467889999999999999999999999877 99999
Q ss_pred eeccCCCCCCCCC
Q 017670 281 LGSIGTPCFTGKQ 293 (368)
Q Consensus 281 ~~S~g~~~~p~k~ 293 (368)
....+.+..+...
T Consensus 85 ~V~~a~~~~~~~~ 97 (102)
T 2cqb_A 85 RVNLAKPMRIKES 97 (102)
T ss_dssp EEEECCCCCCCCC
T ss_pred EEEeCCCCCCCCC
Confidence 9988877665553
No 13
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=98.94 E-value=1.7e-09 Score=79.99 Aligned_cols=85 Identities=15% Similarity=0.162 Sum_probs=69.2
Q ss_pred hcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCcee
Q 017670 201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 280 (368)
Q Consensus 201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL 280 (368)
..++.|||.||.+.+|.+||+++|...+.. ..++++ ....+..+.|.|||.|.+.++|..|+ .||+..+ +||+|
T Consensus 4 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i-~~v~i~-~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~---~g~~l 77 (89)
T 3ucg_A 4 ADARSIYVGNVDYGATAEELEAHFHGCGSV-NRVTIL-CDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLF---RGRQI 77 (89)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHGGGCCE-EEEEEE-ESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEE---TTEEC
T ss_pred CcCCEEEEeCCCCCCCHHHHHHHHHhCCCE-EEEEEE-ecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEE---CCcEE
Confidence 357899999999999999999999976543 334333 33445677899999999999999999 9999987 99999
Q ss_pred eeccCCCCCCC
Q 017670 281 LGSIGTPCFTG 291 (368)
Q Consensus 281 ~~S~g~~~~p~ 291 (368)
......+..|+
T Consensus 78 ~V~~a~~~~pg 88 (89)
T 3ucg_A 78 KVIPKRTNRPG 88 (89)
T ss_dssp EEEETTTTSCC
T ss_pred EEEEccCCCCC
Confidence 98887766554
No 14
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.94 E-value=9.7e-10 Score=84.03 Aligned_cols=86 Identities=19% Similarity=0.146 Sum_probs=71.9
Q ss_pred hcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCcee
Q 017670 201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 280 (368)
Q Consensus 201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL 280 (368)
..++.|||.||.+.+|.+||+++|...+. -...+++.. ...+.|.|||.|.+.++|+.||..||+..| +||+|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~-i~~v~i~~~---~g~~~g~afV~f~~~~~A~~A~~~l~g~~~---~g~~l 85 (103)
T 2d9p_A 13 YQVVNLYVKNLDDGIDDERLRKAFSPFGT-ITSAKVMME---GGRSKGFGFVCFSSPEEATKAVTEMNGRIV---ATKPL 85 (103)
T ss_dssp SSCCCEEEECCCTTCCHHHHHHTTTTTSC-EEEEEEEEC---SSSEEEEEEEEESSHHHHHHHHHHHTTCBS---SSSBC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCC-EEEEEEEcC---CCCcCEEEEEEECCHHHHHHHHHHhCCCEe---CCcEE
Confidence 46899999999999999999999987554 444555543 567889999999999999999999999987 99999
Q ss_pred eeccCCCCCCCCC
Q 017670 281 LGSIGTPCFTGKQ 293 (368)
Q Consensus 281 ~~S~g~~~~p~k~ 293 (368)
......+..+..+
T Consensus 86 ~V~~a~~~~~~~~ 98 (103)
T 2d9p_A 86 YVALAQRKEERQS 98 (103)
T ss_dssp EEEECSSCCCCCC
T ss_pred EEEEecccccCCC
Confidence 9988877665543
No 15
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.94 E-value=4e-09 Score=80.67 Aligned_cols=88 Identities=16% Similarity=0.135 Sum_probs=70.9
Q ss_pred hcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhh-ccceeeecCCce
Q 017670 201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKL-EEGCLLLSNGRP 279 (368)
Q Consensus 201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kl-n~~cL~ls~GRP 279 (368)
..++.|||.||.+.+|.+||+++|...+.. ..++++.....+..+.|.|||.|.+.++|+.||..| |...| +||+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i-~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~---~g~~ 88 (107)
T 2cph_A 13 QTTSKILVRNIPFQANQREIRELFSTFGEL-KTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHL---YGRR 88 (107)
T ss_dssp SCCCCEEEESCCTTCCHHHHHHHHHTTSCE-EEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBS---SSCB
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHccCCe-EEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeE---CCCE
Confidence 467899999999999999999999886643 334444332456678899999999999999999999 77666 8999
Q ss_pred eeeccCCCCCCCC
Q 017670 280 LLGSIGTPCFTGK 292 (368)
Q Consensus 280 L~~S~g~~~~p~k 292 (368)
|....+.+..+..
T Consensus 89 l~v~~a~~~~~~~ 101 (107)
T 2cph_A 89 LVLEWADSEVTVQ 101 (107)
T ss_dssp CEEEECCCCCCCC
T ss_pred EEEEeCCCCCCCC
Confidence 9988887765544
No 16
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.94 E-value=3.6e-09 Score=80.54 Aligned_cols=87 Identities=10% Similarity=0.074 Sum_probs=70.2
Q ss_pred hcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCcee
Q 017670 201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 280 (368)
Q Consensus 201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL 280 (368)
...+.|||.||.+.+|.+||+++|...+.. ..++++. ......+.|.|||.|.+.++|..||..||+..| +||+|
T Consensus 10 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i-~~v~i~~-~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~---~g~~l 84 (102)
T 1x5s_A 10 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQI-SEVVVVK-DRETQRSRGFGFVTFENIDDAKDAMMAMNGKSV---DGRQI 84 (102)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHHHSCC-CEEEECC-CSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCT---TSCCC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCe-EEEEEEe-CCCCCCcccEEEEEECCHHHHHHHHHHhCCCEE---CCeEE
Confidence 457899999999999999999999987653 3444433 333456789999999999999999999999987 99999
Q ss_pred eeccCCCCCCCC
Q 017670 281 LGSIGTPCFTGK 292 (368)
Q Consensus 281 ~~S~g~~~~p~k 292 (368)
......+....+
T Consensus 85 ~v~~a~~~~~~~ 96 (102)
T 1x5s_A 85 RVDQAGKSSDNR 96 (102)
T ss_dssp EEEEEECCCCCC
T ss_pred EEEECCCCCCCC
Confidence 988776655443
No 17
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.92 E-value=4.3e-09 Score=81.66 Aligned_cols=85 Identities=21% Similarity=0.260 Sum_probs=70.2
Q ss_pred hcccEEEEecCCCCCCchHHHHHHHHHhhcc---ceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCC
Q 017670 201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKEN---CSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNG 277 (368)
Q Consensus 201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke~---c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~G 277 (368)
..++.|||.||.+.+|.+||+++|...+... ...+++ ...+-|.|||.|.+.++|..||..||+..| +|
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~-----~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~---~g 94 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMM-----TGRMRGQAFITFPNKEIAWQALHLVNGYKL---YG 94 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEE-----CSSSCSEEEEECSSHHHHHHHHHHSTTCBC---SS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcC-----CCccceEEEEEECCHHHHHHHHHHhCCCEe---CC
Confidence 3478999999999999999999999977642 122222 567789999999999999999999999877 99
Q ss_pred ceeeeccCCCCCCCCC
Q 017670 278 RPLLGSIGTPCFTGKQ 293 (368)
Q Consensus 278 RPL~~S~g~~~~p~k~ 293 (368)
|+|....+.+..+..+
T Consensus 95 ~~l~v~~a~~~~~~~~ 110 (115)
T 2cpx_A 95 KILVIEFGKNKKQRSS 110 (115)
T ss_dssp CBCEEEECCCCSCCCC
T ss_pred cEEEEEEccCCCCCCC
Confidence 9999998877665553
No 18
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.92 E-value=4.5e-09 Score=81.56 Aligned_cols=88 Identities=13% Similarity=0.046 Sum_probs=71.4
Q ss_pred hcccEEEEecCCCCCCchHHHHHHHHHhhccc-------eecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceee
Q 017670 201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENC-------SAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLL 273 (368)
Q Consensus 201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c-------~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ 273 (368)
..++.|||.||.+.+|.+||+++|...+.... .++++ ....+..+.|.|||.|.+.++|..||..||+..|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~-~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~- 90 (113)
T 2cpe_A 13 SDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIY-LDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDF- 90 (113)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECC-BCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEE-
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEE-EeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCcc-
Confidence 45789999999999999999999998776652 23322 2223456789999999999999999999999987
Q ss_pred ecCCceeeeccCCCCCCCC
Q 017670 274 LSNGRPLLGSIGTPCFTGK 292 (368)
Q Consensus 274 ls~GRPL~~S~g~~~~p~k 292 (368)
+||+|....+.+..+..
T Consensus 91 --~g~~l~V~~a~~~~~~~ 107 (113)
T 2cpe_A 91 --QGSKLKVSLARKKPPMN 107 (113)
T ss_dssp --TTEECEEECSSCCCCST
T ss_pred --CCCEEEEEECCCCCCCC
Confidence 99999988887766544
No 19
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=98.92 E-value=2.5e-09 Score=83.18 Aligned_cols=91 Identities=18% Similarity=0.163 Sum_probs=72.9
Q ss_pred hcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCcee
Q 017670 201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 280 (368)
Q Consensus 201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL 280 (368)
..++.|||.||.+.+|.+||+++|...+.. ...+++. ......+.|.|||.|.+.++|+.||..||+..| +||+|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i-~~v~i~~-~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~l 87 (115)
T 2dgo_A 13 SNHFHVFVGDLSPEITTEDIKAAFAPFGRI-SDARVVK-DMATGKSKGYGFVSFFNKWDAENAIQQMGGQWL---GGRQI 87 (115)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHGGGSCE-EEEEEEE-CTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEE---TTEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCe-EEEEEEE-cCCCCCcceEEEEEECCHHHHHHHHHHhCCCEE---CCEEE
Confidence 467899999999999999999999876543 3344432 222456789999999999999999999999877 99999
Q ss_pred eeccCCCCCCCCCCcc
Q 017670 281 LGSIGTPCFTGKQSKF 296 (368)
Q Consensus 281 ~~S~g~~~~p~k~s~f 296 (368)
....+.+..+.+.+.+
T Consensus 88 ~V~~a~~~~~~~~~~~ 103 (115)
T 2dgo_A 88 RTNWATRKPPAPKSTY 103 (115)
T ss_dssp EEEESSCCCCCSCCCC
T ss_pred EEEEccCCCCCCcccc
Confidence 9998887776665443
No 20
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=98.90 E-value=2.4e-09 Score=78.53 Aligned_cols=79 Identities=18% Similarity=0.152 Sum_probs=64.7
Q ss_pred hcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCcee
Q 017670 201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 280 (368)
Q Consensus 201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL 280 (368)
..++.|||.||.+.+|.+||+++|...+.. ...+ |+.......+.|.|||.|.+.++|..|+..||+..| +||+|
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i-~~v~-i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~l 79 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDI-TDIQ-IPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESEL---FGRTI 79 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCE-EEEE-CCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEE---TTEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCE-EEEE-EEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEE---CCcEE
Confidence 357899999999999999999999886643 3333 333444567789999999999999999999999987 99999
Q ss_pred eecc
Q 017670 281 LGSI 284 (368)
Q Consensus 281 ~~S~ 284 (368)
..+.
T Consensus 80 ~v~~ 83 (85)
T 3mdf_A 80 RVNL 83 (85)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7654
No 21
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=98.90 E-value=6.1e-09 Score=82.48 Aligned_cols=85 Identities=19% Similarity=0.151 Sum_probs=69.9
Q ss_pred HhcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCce
Q 017670 200 HEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRP 279 (368)
Q Consensus 200 ~E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRP 279 (368)
.+.++.|||.||.+.+|.+||+++|...+.. ...+++... +..+.|.|||.|.+.++|..||..||+..| +||+
T Consensus 32 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v-~~v~i~~~~--~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~---~g~~ 105 (124)
T 2kt5_A 32 VETGAKLLVSNLDFGVSDADIQELFAEFGTL-KKAAVDYDR--SGRSLGTADVHFERRADALKAMKQYKGVPL---DGRP 105 (124)
T ss_dssp CSSCEEEEEESCCSSCCHHHHHHHHHTTSCC-SEEEEECCS--SSSCCSEEEEEESSHHHHHHHHHHHTTEES---SSCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCe-eEEEEEECC--CCCEeeEEEEEECCHHHHHHHHHHcCCCEE---CCcE
Confidence 4678999999999999999999999886543 344444333 567889999999999999999999999877 9999
Q ss_pred eeeccCCCCCC
Q 017670 280 LLGSIGTPCFT 290 (368)
Q Consensus 280 L~~S~g~~~~p 290 (368)
|....+.+...
T Consensus 106 l~V~~a~~~~~ 116 (124)
T 2kt5_A 106 MDIQLVASQID 116 (124)
T ss_dssp EEEEEECCTTC
T ss_pred EEEEEeCCCCC
Confidence 98877755433
No 22
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=98.89 E-value=1.1e-09 Score=82.51 Aligned_cols=85 Identities=12% Similarity=-0.005 Sum_probs=61.7
Q ss_pred cEEEEecCCCCCCchHHHHHHHHHhh-ccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCceeee
Q 017670 204 TLVVLENLDPSYTSTVVEDLVWHAFK-ENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLLG 282 (368)
Q Consensus 204 tlV~LqNLDps~ts~dVedLi~~a~k-e~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL~~ 282 (368)
..|||.||.+.+|.+||+++|...+- .-..++++. ...+..+-|.|||.|.+.++|+.||..||+..| +||+|..
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~-~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~---~gr~i~V 77 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFE-NRANGQSKGFALVGVGSEASSKKLMDLLPKREL---HGQNPVV 77 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEE-CTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCS---SSCCCEE
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEe-cCCCCccCcEEEEEECCHHHHHHHHHHcCCCee---CCEEEEE
Confidence 35899999999999999999988762 233444432 233456678999999999999999999999988 9999998
Q ss_pred ccCCCCCCCC
Q 017670 283 SIGTPCFTGK 292 (368)
Q Consensus 283 S~g~~~~p~k 292 (368)
....+..|..
T Consensus 78 ~~~~~~~~~~ 87 (90)
T 3p5t_L 78 TPSNKLEHHH 87 (90)
T ss_dssp CCC-------
T ss_pred EECCCCcccc
Confidence 8877665544
No 23
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=98.89 E-value=3.9e-09 Score=83.31 Aligned_cols=88 Identities=14% Similarity=0.022 Sum_probs=71.9
Q ss_pred hcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCcee
Q 017670 201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 280 (368)
Q Consensus 201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL 280 (368)
..++.|||.||.+.+|.+||+++|...+.. ..++++ .......+.|.|||.|.+.++|..||..||+..| +|++|
T Consensus 20 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i-~~v~i~-~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~l 94 (126)
T 3ex7_B 20 VEGWILFVTGVHEEATEEDIHDKFAEYGEI-KNIHLN-LDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDL---MGQPI 94 (126)
T ss_dssp SSSEEEEEESCCTTCCHHHHHHHHHTTSCE-EEEECC-BCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBS---SSSBC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCe-EEEEEE-ecCCCCccceEEEEEECCHHHHHHHHHHhCCCee---CCeEE
Confidence 457899999999999999999999876643 333333 2333567789999999999999999999999887 99999
Q ss_pred eeccCCCCCCCCC
Q 017670 281 LGSIGTPCFTGKQ 293 (368)
Q Consensus 281 ~~S~g~~~~p~k~ 293 (368)
....+.+..+.+.
T Consensus 95 ~v~~a~~~~~~~~ 107 (126)
T 3ex7_B 95 SVDWCFVRGPPKG 107 (126)
T ss_dssp EEEESEESSSCCC
T ss_pred EEEEecCCCCCCC
Confidence 9998877766554
No 24
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.89 E-value=4.3e-09 Score=80.44 Aligned_cols=87 Identities=16% Similarity=0.132 Sum_probs=69.6
Q ss_pred hcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCcee
Q 017670 201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 280 (368)
Q Consensus 201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL 280 (368)
+..+.|||.||.+.+|.+||+++|...+.. ..+++ .....+..+.|.|||.|.+.++|+.||..||+..| +||+|
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i-~~v~i-~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~---~g~~l 85 (103)
T 2dnm_A 11 DGMITLKVDNLTYRTSPDSLRRVFEKYGRV-GDVYI-PREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAEL---DGREL 85 (103)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCE-EEEEC-CBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCB---TTBCC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCE-EEEEE-EeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEE---CCcEE
Confidence 467899999999999999999999876543 23332 23333456789999999999999999999999887 99999
Q ss_pred eeccCCCCCCCC
Q 017670 281 LGSIGTPCFTGK 292 (368)
Q Consensus 281 ~~S~g~~~~p~k 292 (368)
......+.-+..
T Consensus 86 ~V~~a~~~~~~~ 97 (103)
T 2dnm_A 86 RVQVARYGRRDL 97 (103)
T ss_dssp EEEECSSCCSCC
T ss_pred EEEECCcCCCCC
Confidence 988876654443
No 25
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=98.89 E-value=1.1e-08 Score=78.38 Aligned_cols=91 Identities=15% Similarity=0.120 Sum_probs=72.3
Q ss_pred hcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCcee
Q 017670 201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 280 (368)
Q Consensus 201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL 280 (368)
...+.|||.||.+.+|.+||+++|...+.. ..++++ ....+..+-|.|||.|.+.++|..||..||+..++--+||+|
T Consensus 11 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i-~~v~i~-~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l 88 (106)
T 2dgp_A 11 HDAIKLFIGQIPRNLDEKDLKPLFEEFGKI-YELTVL-KDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPI 88 (106)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHHHHSCC-CEEECC-CCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCe-eEEEEE-ecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceE
Confidence 457899999999999999999999987643 334333 333446778999999999999999999999987655478999
Q ss_pred eeccCCCCCCCCC
Q 017670 281 LGSIGTPCFTGKQ 293 (368)
Q Consensus 281 ~~S~g~~~~p~k~ 293 (368)
....+.+......
T Consensus 89 ~v~~a~~~~~~~~ 101 (106)
T 2dgp_A 89 QVKPADSESRGGS 101 (106)
T ss_dssp EEEECCCCSCCCC
T ss_pred EEEECCcccccCC
Confidence 9888776655443
No 26
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=98.89 E-value=4e-09 Score=81.46 Aligned_cols=86 Identities=8% Similarity=-0.025 Sum_probs=69.2
Q ss_pred hcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCcee
Q 017670 201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 280 (368)
Q Consensus 201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL 280 (368)
..++.|||.||.+.+|.+||+++|...+.. ...++ +....+..+.|.|||.|.+.++|..||..||+..| +||+|
T Consensus 24 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i-~~v~i-~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~---~g~~l 98 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDEIQEKFCDYGEI-KNIHL-NLDRRTGFSKGYALVEYETHKQALAAKEALNGAEI---MGQTI 98 (110)
T ss_dssp TTBEEEEEESCCTTCCHHHHHHHHGGGSCE-EEEEC-CBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEE---TTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCE-EEEEE-EecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEE---CCcEE
Confidence 467899999999999999999999876643 23333 23333456789999999999999999999999877 99999
Q ss_pred eeccCCCCCCC
Q 017670 281 LGSIGTPCFTG 291 (368)
Q Consensus 281 ~~S~g~~~~p~ 291 (368)
....+.+..|.
T Consensus 99 ~V~~a~~~~~~ 109 (110)
T 1oo0_B 99 QVDWCFVKGPK 109 (110)
T ss_dssp EEEESEESSCC
T ss_pred EEEEcccCCCC
Confidence 98877665543
No 27
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.89 E-value=3.9e-09 Score=80.35 Aligned_cols=79 Identities=11% Similarity=0.005 Sum_probs=67.8
Q ss_pred hcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCcee
Q 017670 201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 280 (368)
Q Consensus 201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL 280 (368)
+..+.|||.||.+.+|.+||+++|...+...| +++ ...+.|.|||.|.+.++|+.||..||+..| +||+|
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~--~~~-----~~~~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~l 86 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGSVPL--RLT-----WQGPRRRAFLHYPDSAAAQQAVSCLQGLRL---GTDTL 86 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTCCCS--EEE-----EETTTTEEEEECSSHHHHHHHHHHHTTCCS---SSSCC
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCCEEE--EEE-----cCCCCcEEEEEECCHHHHHHHHHHhCCCEE---CCcEE
Confidence 45789999999999999999999999887654 333 147789999999999999999999999987 99999
Q ss_pred eeccCCCCC
Q 017670 281 LGSIGTPCF 289 (368)
Q Consensus 281 ~~S~g~~~~ 289 (368)
....+.+..
T Consensus 87 ~V~~a~~~~ 95 (97)
T 2e5j_A 87 RVALARQQR 95 (97)
T ss_dssp EEEECCCCC
T ss_pred EEEEcCCCC
Confidence 988776543
No 28
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.89 E-value=7.4e-09 Score=79.63 Aligned_cols=88 Identities=16% Similarity=0.117 Sum_probs=69.5
Q ss_pred HhcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhc------cceee
Q 017670 200 HEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLE------EGCLL 273 (368)
Q Consensus 200 ~E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln------~~cL~ 273 (368)
...++.|||.||.+.+|.+||.++|...+.. ..++++ ....+..+.|.|||.|.+.++|+.||..|| ...|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i-~~v~i~-~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~- 88 (111)
T 1x4h_A 12 VTEGKTVFIRNLSFDSEEEALGEVLQQFGDL-KYVRVV-LHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKL- 88 (111)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCE-EEEECC-BCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEES-
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCe-EEEEEE-ecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEE-
Confidence 3568899999999999999999999876543 333333 333346778999999999999999999999 6555
Q ss_pred ecCCceeeeccCCCCCCCC
Q 017670 274 LSNGRPLLGSIGTPCFTGK 292 (368)
Q Consensus 274 ls~GRPL~~S~g~~~~p~k 292 (368)
+||+|......+.....
T Consensus 89 --~g~~l~v~~a~~~~~~~ 105 (111)
T 1x4h_A 89 --DGRQLKVDLAVTRDEAA 105 (111)
T ss_dssp --SSCEEEEECCCCCCCCC
T ss_pred --cCEEEEEEECCCCccCC
Confidence 99999988877655443
No 29
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=98.88 E-value=2.3e-09 Score=82.26 Aligned_cols=79 Identities=19% Similarity=0.172 Sum_probs=67.1
Q ss_pred HhcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCce
Q 017670 200 HEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRP 279 (368)
Q Consensus 200 ~E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRP 279 (368)
.+.++.|||.||.+.+|.+||+++|...+.. ..++++... +..+.|.|||.|.+.++|..||..||+..| +||+
T Consensus 26 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i-~~v~i~~~~--~g~~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~ 99 (107)
T 3ulh_A 26 VETGGKLLVSNLDFGVSDADIQELFAEFGTL-KKAAVHYDR--SGRSLGTADVHFERKADALKAMKQYNGVPL---DGRP 99 (107)
T ss_dssp CCCSEEEEEESCCTTCCHHHHHHHHHTTSCE-EEEEEEECT--TSCEEEEEEEEESSHHHHHHHHHHHTTCEE---TTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCe-EEEEEEECC--CCCcceEEEEEECCHHHHHHHHHHhCCCEe---CCcE
Confidence 6778999999999999999999999976544 455555433 567789999999999999999999999988 9999
Q ss_pred eeecc
Q 017670 280 LLGSI 284 (368)
Q Consensus 280 L~~S~ 284 (368)
|....
T Consensus 100 l~V~~ 104 (107)
T 3ulh_A 100 MNIQL 104 (107)
T ss_dssp CEEEE
T ss_pred EEEEE
Confidence 98654
No 30
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=98.87 E-value=2.7e-09 Score=81.75 Aligned_cols=85 Identities=13% Similarity=0.028 Sum_probs=67.5
Q ss_pred hcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCcee
Q 017670 201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 280 (368)
Q Consensus 201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL 280 (368)
..++.|||.||.+.+|.+||+++|...+.. ...++ .....+..+.|.|||.|.+.++|+.||..||+..| +||+|
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i-~~v~i-~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~l 95 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEI-KNIHL-NLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDL---MGQPI 95 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCE-EEEEE-EECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBS---SSSBC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCe-EEEEE-EecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEE---CCcEE
Confidence 457899999999999999999999886643 22322 22233356679999999999999999999999877 99999
Q ss_pred eeccCCCCCC
Q 017670 281 LGSIGTPCFT 290 (368)
Q Consensus 281 ~~S~g~~~~p 290 (368)
....+.+..|
T Consensus 96 ~V~~a~~~~~ 105 (106)
T 1p27_B 96 SVDWCFVRGP 105 (106)
T ss_dssp EEEESEESSC
T ss_pred EEEeecCCCC
Confidence 9877765433
No 31
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=98.87 E-value=1e-08 Score=83.58 Aligned_cols=87 Identities=18% Similarity=0.187 Sum_probs=71.6
Q ss_pred hcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCcee
Q 017670 201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 280 (368)
Q Consensus 201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL 280 (368)
...+.|||.||.+.+|.+||+++|...+.. ..+++ +....+..+-|.|||.|.+.++|+.||..||+..| +||||
T Consensus 68 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v-~~~~i-~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~l 142 (158)
T 2kn4_A 68 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRV-GDVYI-PRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVL---DGREL 142 (158)
T ss_dssp CBCCEEEEESCCTTCCHHHHHHHHHHHSCE-EEEEC-CCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEES---SSSEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCe-EEEEE-eecCCCCccceEEEEEECCHHHHHHHHHHhCCCEE---CCeEE
Confidence 457899999999999999999999776643 34443 33334567889999999999999999999999877 99999
Q ss_pred eeccCCCCCCCC
Q 017670 281 LGSIGTPCFTGK 292 (368)
Q Consensus 281 ~~S~g~~~~p~k 292 (368)
..+.+.+.-|..
T Consensus 143 ~v~~a~~~~~~~ 154 (158)
T 2kn4_A 143 RVQMARYGRPPD 154 (158)
T ss_dssp EEEEECCSSCCC
T ss_pred EEEECCCCCCCC
Confidence 999887765554
No 32
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=98.87 E-value=6.6e-09 Score=79.13 Aligned_cols=82 Identities=13% Similarity=0.028 Sum_probs=67.5
Q ss_pred hcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCcee
Q 017670 201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 280 (368)
Q Consensus 201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL 280 (368)
..++.|||.||.+.+|.+||+++|...+.... ++| .......+.|.|||-|.+.++|+.||. ||...| +||+|
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~--~~~-~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~---~g~~l 87 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND--LAV-VDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKV---FGNEI 87 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT--CCC-CEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCB---TTBCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce--EEE-ecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEE---CCcEE
Confidence 35789999999999999999999999887655 222 233335778999999999999999998 999877 89999
Q ss_pred eeccCCCCC
Q 017670 281 LGSIGTPCF 289 (368)
Q Consensus 281 ~~S~g~~~~ 289 (368)
....+.+..
T Consensus 88 ~V~~a~~~~ 96 (101)
T 1fj7_A 88 KLEKPKGRD 96 (101)
T ss_dssp EEECCSCCC
T ss_pred EEEEcCCCC
Confidence 987776543
No 33
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.87 E-value=3.5e-09 Score=80.52 Aligned_cols=83 Identities=13% Similarity=0.113 Sum_probs=67.2
Q ss_pred cccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCceee
Q 017670 202 HGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLL 281 (368)
Q Consensus 202 ~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL~ 281 (368)
..+.|||.||.+.+|.+||+++|...+.. -.++++... +..+.|.|||.|.+.++|+.||..||+..| +||+|.
T Consensus 16 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i-~~v~i~~~~--~g~~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~l~ 89 (100)
T 2do4_A 16 EKHKLFISGLPFSCTKEELEEICKAHGTV-KDLRLVTNR--AGKPKGLAYVEYENESQASQAVMKMDGMTI---KENIIK 89 (100)
T ss_dssp CCSCEEEESCCTTCCHHHHHHHHTTTSCE-EEEEEEECT--TSCEEEEEEEEESSHHHHHHHHHHHTTEES---SSCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCe-EEEEEEECC--CCCEEeEEEEEECCHHHHHHHHHHhCCCEE---CCEEEE
Confidence 46889999999999999999999886543 334444332 456779999999999999999999999877 999999
Q ss_pred eccCCCCCC
Q 017670 282 GSIGTPCFT 290 (368)
Q Consensus 282 ~S~g~~~~p 290 (368)
.....+..+
T Consensus 90 v~~a~~~~~ 98 (100)
T 2do4_A 90 VAISNSGPS 98 (100)
T ss_dssp EEECCCCSC
T ss_pred EEECCCCCC
Confidence 877765543
No 34
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=98.86 E-value=4.1e-09 Score=82.21 Aligned_cols=88 Identities=11% Similarity=0.037 Sum_probs=70.9
Q ss_pred cccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCceee
Q 017670 202 HGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLL 281 (368)
Q Consensus 202 ~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL~ 281 (368)
.++.|||.||.+.+|.+||+++|...+. -..++++. ...+..+.|.|||.|.+.++|+.||..||+..| +||+|.
T Consensus 24 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~-i~~v~i~~-~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~l~ 98 (115)
T 2cpz_A 24 EGANLFIYHLPQEFGDQDLLQMFMPFGN-VVSAKVFI-DKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQI---GMKRLK 98 (115)
T ss_dssp TTCCEEEESCCSSCCHHHHHHHHGGGSC-CSEEEEEE-CSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEE---TTEECE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCC-eEEEEEEE-CCCCCCcCccEEEEECCHHHHHHHHHHcCCCEE---CCEEEE
Confidence 4688999999999999999999987554 33444433 223456778999999999999999999999887 999999
Q ss_pred eccCCCCCCCCCC
Q 017670 282 GSIGTPCFTGKQS 294 (368)
Q Consensus 282 ~S~g~~~~p~k~s 294 (368)
.....+..+.++.
T Consensus 99 V~~a~~~~~~~~~ 111 (115)
T 2cpz_A 99 VQLKRSKNDSKSG 111 (115)
T ss_dssp EECCCCSCCCCCC
T ss_pred EEEcCCCCcCCCC
Confidence 9988777665543
No 35
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.86 E-value=1.4e-08 Score=77.52 Aligned_cols=86 Identities=17% Similarity=0.112 Sum_probs=69.5
Q ss_pred hcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCcee
Q 017670 201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 280 (368)
Q Consensus 201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL 280 (368)
...+.|||.||.+.+|.+||+++|...+... .++++... ..+.|.|||.|.+.++|+.||..||...| +||+|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~-~v~i~~~~---~~~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~l 85 (103)
T 2cqi_A 13 GQPRTLYVGNLSRDVTEVLILQLFSQIGPCK-SCKMITEH---TSNDPYCFVEFYEHRDAAAALAAMNGRKI---LGKEV 85 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHHHHSCEE-EEEEECCC---CSSCCEEEEEESSHHHHHHHHHHHTTEEE---TTEEE
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHhcCCEe-EEEEEecC---CCCCCEEEEEECCHHHHHHHHHHhCCCCc---CCCeE
Confidence 4578999999999999999999998876543 34444331 22569999999999999999999999987 89999
Q ss_pred eeccCCCCCCCCC
Q 017670 281 LGSIGTPCFTGKQ 293 (368)
Q Consensus 281 ~~S~g~~~~p~k~ 293 (368)
....+.+....++
T Consensus 86 ~V~~a~~~~~~~~ 98 (103)
T 2cqi_A 86 KVNWATTPSSQKS 98 (103)
T ss_dssp EEEECCCTTCCCC
T ss_pred EEEECCCCccccc
Confidence 9988877555443
No 36
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=98.86 E-value=4e-09 Score=79.06 Aligned_cols=81 Identities=21% Similarity=0.179 Sum_probs=66.1
Q ss_pred HHhcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCc
Q 017670 199 AHEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGR 278 (368)
Q Consensus 199 A~E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GR 278 (368)
+.+.++.|||.||.+.+|.+||+++|...+.. ...+++.... ..+.|.|||.|.+.++|+.||..||+..| +||
T Consensus 12 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i-~~v~i~~~~~--g~~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~ 85 (95)
T 2ywk_A 12 QEEADRTVFVGNLEARVREEILYELFLQAGPL-TKVTICKDRE--GKPKSFGFVCFKHPESVSYAIALLNGIRL---YGR 85 (95)
T ss_dssp CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCE-EEEEEEECTT--SCEEEEEEEEESSTHHHHHHHHHHTTCEE---TTE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCE-EEEEEEECCC--CCCceEEEEEECCHHHHHHHHHHhCCCEE---CCC
Confidence 35678999999999999999999999886543 3344443322 56789999999999999999999999987 999
Q ss_pred eeeeccC
Q 017670 279 PLLGSIG 285 (368)
Q Consensus 279 PL~~S~g 285 (368)
+|.....
T Consensus 86 ~l~V~~a 92 (95)
T 2ywk_A 86 PINVSGP 92 (95)
T ss_dssp ECEEECC
T ss_pred EEEEEEc
Confidence 9986543
No 37
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.86 E-value=4.3e-09 Score=79.55 Aligned_cols=88 Identities=17% Similarity=0.141 Sum_probs=68.3
Q ss_pred cccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCccc--CCCCCceEEEEEechHHHHHHHHhhccceeeecCCce
Q 017670 202 HGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAF--ASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRP 279 (368)
Q Consensus 202 ~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~y--s~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRP 279 (368)
.++.|||.||.+.+|.+||+++|...+.. ...+++....- ...+.|.|||.|.+.++|+.||..||+..| +||+
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i-~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~ 79 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAI-KSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTV---DGHK 79 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCE-EEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEE---TTEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCe-EEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCee---CCeE
Confidence 56889999999999999999999876543 23333322111 125568999999999999999999999977 9999
Q ss_pred eeeccCCCCCCCCC
Q 017670 280 LLGSIGTPCFTGKQ 293 (368)
Q Consensus 280 L~~S~g~~~~p~k~ 293 (368)
|......+..+..+
T Consensus 80 l~V~~a~~~~~~~~ 93 (98)
T 2cpf_A 80 LEVRISERATKPAS 93 (98)
T ss_dssp CEEECSSCSSCCCC
T ss_pred EEEEEccCCCCCCC
Confidence 99888876655443
No 38
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.86 E-value=1.1e-08 Score=78.23 Aligned_cols=83 Identities=19% Similarity=0.260 Sum_probs=67.5
Q ss_pred hcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCcee
Q 017670 201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 280 (368)
Q Consensus 201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL 280 (368)
...+.|||.||.+.+|.+||+++|...+.. ..+++ .....+..+.|.|||.|.+.++|+.||..||...| +||+|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i-~~v~i-~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~l 87 (105)
T 1x5u_A 13 NQDATVYVGGLDEKVSEPLLWELFLQAGPV-VNTHM-PKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKL---YGKPI 87 (105)
T ss_dssp CTTTEEEEECCCTTCCHHHHHHHHHTTSCE-EEEEC-CBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBC---SSCBC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCe-EEEEE-EecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeE---CCeEE
Confidence 357899999999999999999999886643 33333 33333467889999999999999999999999877 99999
Q ss_pred eeccCCCC
Q 017670 281 LGSIGTPC 288 (368)
Q Consensus 281 ~~S~g~~~ 288 (368)
....+.+.
T Consensus 88 ~v~~a~~~ 95 (105)
T 1x5u_A 88 RVNKASAH 95 (105)
T ss_dssp EEEETTTT
T ss_pred EEEECCCC
Confidence 98776554
No 39
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=98.86 E-value=9.1e-09 Score=77.93 Aligned_cols=82 Identities=20% Similarity=0.116 Sum_probs=66.6
Q ss_pred ccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCceeee
Q 017670 203 GTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLLG 282 (368)
Q Consensus 203 GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL~~ 282 (368)
.+.|||.||.+.+|.+||+++|...+.. ...+++ ....+..+.|.|||.|.+.++|..||..||+..+ +||+|..
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i-~~v~i~-~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~---~g~~l~V 76 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPV-INLKMM-FDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQL---GSRFLKC 76 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCE-EEEECC-BCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEE---TTEECEE
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCE-EEEEEE-eCCCCCccceEEEEEECCHHHHHHHHHHhCCCeE---CCeEEEE
Confidence 4789999999999999999999886643 333333 3333467789999999999999999999999877 9999998
Q ss_pred ccCCCCC
Q 017670 283 SIGTPCF 289 (368)
Q Consensus 283 S~g~~~~ 289 (368)
..+.+..
T Consensus 77 ~~a~~~~ 83 (96)
T 2x1f_A 77 GYSSNSD 83 (96)
T ss_dssp EECSCSS
T ss_pred EEcCCCC
Confidence 8776543
No 40
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=98.85 E-value=3.4e-09 Score=78.10 Aligned_cols=82 Identities=18% Similarity=0.185 Sum_probs=64.4
Q ss_pred hcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCcee
Q 017670 201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 280 (368)
Q Consensus 201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL 280 (368)
..++.|||.||.+.+|.+||+++|...+.. ...+++ ....+..+.|.|||.|.+.++|+.||..||+..+ +||+|
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i-~~v~i~-~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~---~g~~l 78 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRI-SDARVV-KDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWL---GGRQI 78 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCE-EEEEEE-ECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEE---TTEEC
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCE-eEEEEE-ecCCCCccceEEEEEECCHHHHHHHHHHcCCCEE---CCeEE
Confidence 357899999999999999999999876543 333333 2233456789999999999999999999999877 99999
Q ss_pred eeccCCC
Q 017670 281 LGSIGTP 287 (368)
Q Consensus 281 ~~S~g~~ 287 (368)
....+.+
T Consensus 79 ~v~~a~~ 85 (87)
T 3bs9_A 79 RTNWATR 85 (87)
T ss_dssp EEEEEC-
T ss_pred EEEecCC
Confidence 8766543
No 41
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=98.85 E-value=4.2e-09 Score=76.93 Aligned_cols=79 Identities=16% Similarity=0.172 Sum_probs=64.3
Q ss_pred cEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCceeeec
Q 017670 204 TLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLLGS 283 (368)
Q Consensus 204 tlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL~~S 283 (368)
+.|||.||.+..|.+||+++|...+.. ..++++ +......+.|.|||.|.+.++|+.|+..||+..| +||+|...
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i-~~~~i~-~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~---~g~~l~v~ 76 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSY-LSGHVM-WDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDL---NGRPLRIN 76 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTE-EEEEEE-ECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEE---TTEECEEE
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCe-eEEEEE-EcCCCCCccceEEEEECCHHHHHHHHHHhcCCee---CCcEEEEE
Confidence 579999999999999999999876543 334333 2233456789999999999999999999999987 99999977
Q ss_pred cCCC
Q 017670 284 IGTP 287 (368)
Q Consensus 284 ~g~~ 287 (368)
.+.+
T Consensus 77 ~a~~ 80 (83)
T 3md1_A 77 WAAK 80 (83)
T ss_dssp ECCC
T ss_pred ecCc
Confidence 6654
No 42
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.85 E-value=7.7e-09 Score=79.39 Aligned_cols=85 Identities=11% Similarity=0.085 Sum_probs=68.2
Q ss_pred cccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCceee
Q 017670 202 HGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLL 281 (368)
Q Consensus 202 ~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL~ 281 (368)
..+.|||.||.+.+|.+||+++|...+ -..++++........+.|.|||.|.+.++|+.|| .||...| +||+|.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G--i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~---~g~~l~ 87 (104)
T 1wi8_A 14 PPYTAFLGNLPYDVTEESIKEFFRGLN--ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESL---GNKRIR 87 (104)
T ss_dssp SCEEEEEESCCSSCCHHHHHHHTTTSC--EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEE---TTEECE
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHCC--ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEe---CCcEEE
Confidence 458999999999999999999999875 4444443322222567899999999999999999 9999877 999999
Q ss_pred eccCCCCCCCC
Q 017670 282 GSIGTPCFTGK 292 (368)
Q Consensus 282 ~S~g~~~~p~k 292 (368)
.....+.....
T Consensus 88 V~~a~~~~~~~ 98 (104)
T 1wi8_A 88 VDVADQAQDKD 98 (104)
T ss_dssp EEECCCCCCCC
T ss_pred EEEccCCCCCC
Confidence 88877665544
No 43
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.85 E-value=1e-08 Score=79.29 Aligned_cols=82 Identities=16% Similarity=0.057 Sum_probs=66.7
Q ss_pred hcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCcee
Q 017670 201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 280 (368)
Q Consensus 201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL 280 (368)
...+.|||.||.+.+|.+||+++|...+... .++++ .+..+.|.|||.|.+.++|+.||..||...| +||+|
T Consensus 20 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~-~~~i~----~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~---~g~~l 91 (109)
T 1x4a_A 20 NNDCRIYVGNLPPDIRTKDIEDVFYKYGAIR-DIDLK----NRRGGPPFAFVEFEDPRDAEDAVYGRDGYDY---DGYRL 91 (109)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGGSCEE-EEEEC----CSSSSSCCEEEEESCHHHHHHHHHHHTTCEE---TTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeE-EEEEE----ECCCCCcEEEEEECCHHHHHHHHHHcCCCEE---CCeEE
Confidence 4568999999999999999999999866542 23332 2345689999999999999999999999877 99999
Q ss_pred eeccCCCCCC
Q 017670 281 LGSIGTPCFT 290 (368)
Q Consensus 281 ~~S~g~~~~p 290 (368)
......+..+
T Consensus 92 ~V~~a~~~~~ 101 (109)
T 1x4a_A 92 RVEFPRSGRG 101 (109)
T ss_dssp EEECCCCCCC
T ss_pred EEEEcccCCC
Confidence 9887765443
No 44
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.84 E-value=5.3e-09 Score=79.69 Aligned_cols=81 Identities=20% Similarity=0.170 Sum_probs=66.6
Q ss_pred hcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCcee
Q 017670 201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 280 (368)
Q Consensus 201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL 280 (368)
...+.|||.||.+.+|.+||+++|.+.+.. +++ .. ....+.|.|||.|.+.++|+.||..||...| +||+|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v----~~~-~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~---~g~~l 83 (101)
T 2fc9_A 13 GESKTLVLSNLSYSATEETLQEVFEKATFI----KVP-QN-QNGKSKGYAFIEFASFEDAKEALNSCNKREI---EGRAI 83 (101)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHCSSCSEE----ECC-BC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEE---TTEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCEE----EEE-EC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEe---CCeEE
Confidence 357899999999999999999998875432 332 22 4457789999999999999999999999877 89999
Q ss_pred eeccCCCCCC
Q 017670 281 LGSIGTPCFT 290 (368)
Q Consensus 281 ~~S~g~~~~p 290 (368)
......+...
T Consensus 84 ~v~~a~~~~~ 93 (101)
T 2fc9_A 84 RLELQGPRGS 93 (101)
T ss_dssp EEEECSSCCC
T ss_pred EEEEcCCCCC
Confidence 9888766543
No 45
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=98.84 E-value=6.5e-09 Score=79.19 Aligned_cols=85 Identities=22% Similarity=0.153 Sum_probs=69.2
Q ss_pred hHHHHHHHHhcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccce
Q 017670 192 WEERIRVAHEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGC 271 (368)
Q Consensus 192 WEe~lr~A~E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~c 271 (368)
.++.++.+...++.|||.||.+.+|.+||+++|...+.. ..++++ ++.|.|||.|.+.++|+.||..||+..
T Consensus 16 ~~~~~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i-~~~~~~-------~~~g~afV~f~~~~~A~~Ai~~l~g~~ 87 (101)
T 2la4_A 16 VDHIIRSAPPRVTTAYIGNIPHFATEADLIPLFQNFGFI-LDFKHY-------PEKGCCFIKYDTHEQAAVCIVALANFP 87 (101)
T ss_dssp HHHHHTTSCSSCCEEEEESCCTTCCHHHHHHHHHTTSCC-SEEEEE-------TTTTEEEEECSSHHHHHHHHHHHTTCE
T ss_pred hhhhhhcCCCCCCEEEEcCCCcccCHHHHHHHHHhCCCE-EEEEEe-------cCCCEEEEEECCHHHHHHHHHHhCCCe
Confidence 345555556668999999999999999999999876543 344444 567999999999999999999999987
Q ss_pred eeecCCceeeeccCCC
Q 017670 272 LLLSNGRPLLGSIGTP 287 (368)
Q Consensus 272 L~ls~GRPL~~S~g~~ 287 (368)
| +||+|....+.+
T Consensus 88 ~---~g~~l~V~~a~~ 100 (101)
T 2la4_A 88 F---QGRNLRTGWGKE 100 (101)
T ss_dssp E---TTEECCCCBCCC
T ss_pred E---CCeEEEEEeccC
Confidence 7 899998776543
No 46
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=98.84 E-value=6.8e-09 Score=77.41 Aligned_cols=83 Identities=19% Similarity=0.115 Sum_probs=67.6
Q ss_pred hcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCcee
Q 017670 201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 280 (368)
Q Consensus 201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL 280 (368)
..++.|||.||.+.+|.+||+++|...+.. ..++++. -...+.|.|||.|.+.++|+.||..||+..+ +||+|
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v-~~~~i~~---~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~---~g~~l 78 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHV-LYADIKM---ENGKSKGCGVVKFESPEVAERACRMMNGMKL---SGREI 78 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCE-EEEEEEE---SSSCEEEEEEEEESSHHHHHHHHHHHTTCCB---TTBCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCE-EEEEEEc---cCCCcceEEEEEECCHHHHHHHHHHhCCCEE---CCcEE
Confidence 467899999999999999999999986543 3344443 1346779999999999999999999999887 99999
Q ss_pred eeccCCCCCC
Q 017670 281 LGSIGTPCFT 290 (368)
Q Consensus 281 ~~S~g~~~~p 290 (368)
......+..+
T Consensus 79 ~v~~a~~~~~ 88 (92)
T 2dgv_A 79 DVRIDRNASG 88 (92)
T ss_dssp CCEECSCCSS
T ss_pred EEEEcCCCCC
Confidence 9877765443
No 47
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.84 E-value=2.8e-09 Score=81.48 Aligned_cols=88 Identities=14% Similarity=0.089 Sum_probs=70.2
Q ss_pred hcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCcee
Q 017670 201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 280 (368)
Q Consensus 201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL 280 (368)
..++.|||.||.+.+|.+||+++|...+.. ..+++ +....+..+.|.|||.|.+.++|..||..||+..| +||+|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i-~~v~i-~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~---~g~~l 87 (103)
T 2cq0_A 13 DDNATIRVTNLSEDTRETDLQELFRPFGSI-SRIYL-AKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGY---DHLIL 87 (103)
T ss_dssp SSSEEEEEESCCTTCCHHHHHTTSTTTCCE-EEEEE-EECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEE---TTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCe-EEEEE-eecCCCCceeeEEEEEECCHHHHHHHHHHcCCCee---CCcEE
Confidence 457899999999999999999999876543 22333 23333456778999999999999999999999887 99999
Q ss_pred eeccCCCCCCCCC
Q 017670 281 LGSIGTPCFTGKQ 293 (368)
Q Consensus 281 ~~S~g~~~~p~k~ 293 (368)
......+..+..+
T Consensus 88 ~v~~a~~~~~~~~ 100 (103)
T 2cq0_A 88 NVEWAKPSTNSGP 100 (103)
T ss_dssp EEEESSCCCCSCC
T ss_pred EEEECCCCCCCCC
Confidence 9888877655543
No 48
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.84 E-value=8.4e-09 Score=78.07 Aligned_cols=84 Identities=18% Similarity=0.155 Sum_probs=67.8
Q ss_pred hcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCce-
Q 017670 201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRP- 279 (368)
Q Consensus 201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRP- 279 (368)
...+.|||.||.+.+|.+||+++|...+.....++++.. .....+.|.|||.|.+.++|+.||..||+..| +||+
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~-~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~~ 82 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRN-RLTGIPAGYCFVEFADLATAEKCLHKINGKPL---PGATP 82 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEEC-SSSCCEEEEEEEECSCHHHHHHHHHTTTTSEE---SSCSS
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeec-CCCCCcCCEEEEEeCCHHHHHHHHHHHcCCcc---CCCCc
Confidence 457899999999999999999999987765435554432 23456679999999999999999999999887 9999
Q ss_pred ---eeeccCCCC
Q 017670 280 ---LLGSIGTPC 288 (368)
Q Consensus 280 ---L~~S~g~~~ 288 (368)
|....+.+.
T Consensus 83 ~~~l~v~~a~~~ 94 (99)
T 2div_A 83 AKRFKLNYATYS 94 (99)
T ss_dssp CEECCEEETTCC
T ss_pred ceeEEEeecCCC
Confidence 776665543
No 49
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.83 E-value=5.2e-09 Score=78.22 Aligned_cols=80 Identities=14% Similarity=0.035 Sum_probs=64.3
Q ss_pred hcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCcee
Q 017670 201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 280 (368)
Q Consensus 201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL 280 (368)
..++.|||.||.+.+|.+||+++|...+.. ...+++ .......+.|.|||.|.+.++|+.||..||+..| +||+|
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v-~~v~i~-~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~---~g~~l 87 (95)
T 2cqc_A 13 DPNCCLGVFGLSLYTTERDLREVFSKYGPI-ADVSIV-YDQQSRRSRGFAFVYFENVDDAKEAKERANGMEL---DGRRI 87 (95)
T ss_dssp CGGGCEEEESCCSSCCHHHHHHHHHTTSCE-EEEEEE-ECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEE---TTEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCe-eEEEEE-EcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEE---CCEEE
Confidence 457899999999999999999999886543 233332 2233356778999999999999999999999877 99999
Q ss_pred eeccC
Q 017670 281 LGSIG 285 (368)
Q Consensus 281 ~~S~g 285 (368)
.....
T Consensus 88 ~v~~a 92 (95)
T 2cqc_A 88 RVSGP 92 (95)
T ss_dssp EEECC
T ss_pred EEEec
Confidence 86654
No 50
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=98.83 E-value=6.8e-09 Score=79.35 Aligned_cols=86 Identities=12% Similarity=0.015 Sum_probs=69.2
Q ss_pred hcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCC---
Q 017670 201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNG--- 277 (368)
Q Consensus 201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~G--- 277 (368)
+.++.|||.||.+.+|.+||+++|...+. -...+++... +..+.|.|||.|.+.++|+.||..||...+ +|
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~-i~~v~i~~~~--~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~---~gg~~ 86 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGV-IDECTVLRGP--DGSSKGCAFVKFSSHTEAQAAIHALHGSQT---MPGAS 86 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSC-EEEEEEEECS--SSCEEEEEEEEESSHHHHHHHHHHHSSCCC---CTTCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCC-eEEEEEEECC--CCCcCcEEEEEeCCHHHHHHHHHHHcCCcc---CCCCC
Confidence 45899999999999999999999987654 3344444332 456679999999999999999999999877 55
Q ss_pred ceeeeccCCCCCCCC
Q 017670 278 RPLLGSIGTPCFTGK 292 (368)
Q Consensus 278 RPL~~S~g~~~~p~k 292 (368)
|||....+.+.....
T Consensus 87 ~~l~V~~a~~~~~~~ 101 (105)
T 2dnh_A 87 SSLVVKFADTDKESG 101 (105)
T ss_dssp SCCEEEESCSSCCCS
T ss_pred ccEEEEECccCcccC
Confidence 999988877655544
No 51
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=98.83 E-value=1.1e-08 Score=81.48 Aligned_cols=83 Identities=12% Similarity=0.133 Sum_probs=68.9
Q ss_pred hcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCcee
Q 017670 201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 280 (368)
Q Consensus 201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL 280 (368)
+..+.|||.||.+.+|.+||+++|...+. -..++++... +..+.|.|||.|.+.++|+.||..||+..| +||+|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~-i~~v~i~~~~--~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~---~g~~l 78 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGP-ISEVLLIKDR--TSKSRGFAFITFENPADAKNAAKDMNGKSL---HGKAI 78 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSC-CSEEEEECST--TTTCCCEEEEECSSHHHHHHHHHHCSSCBC---SSSBC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCC-EEEEEEEECC--CCCcccEEEEEECCHHHHHHHHHHhCCCEE---CCEEE
Confidence 45789999999999999999999987654 3445554443 567889999999999999999999999887 99999
Q ss_pred eeccCCCCC
Q 017670 281 LGSIGTPCF 289 (368)
Q Consensus 281 ~~S~g~~~~ 289 (368)
....+.+..
T Consensus 79 ~V~~a~~~~ 87 (116)
T 2fy1_A 79 KVEQAKKPS 87 (116)
T ss_dssp EEEECCCSS
T ss_pred EEEECCCCC
Confidence 987775443
No 52
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.82 E-value=1.3e-08 Score=77.33 Aligned_cols=86 Identities=12% Similarity=0.066 Sum_probs=68.8
Q ss_pred hcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCcee
Q 017670 201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 280 (368)
Q Consensus 201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL 280 (368)
...+.|||.||.+.+|.+||+++|...+. -..++++ .......+.|.|||.|.+.++|+.||. ||...| +||+|
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~-i~~v~i~-~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~---~g~~l 81 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKKFGV-VTEVVMI-YDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDI---MGKKV 81 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSSSSC-EEEEEEC-CCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBS---SSCBC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCC-eEEEEEE-eCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEE---CCeEE
Confidence 45689999999999999999999988543 3344443 333346778999999999999999998 988877 99999
Q ss_pred eeccCCCCCCCC
Q 017670 281 LGSIGTPCFTGK 292 (368)
Q Consensus 281 ~~S~g~~~~p~k 292 (368)
......+.....
T Consensus 82 ~V~~a~~~~~~~ 93 (99)
T 2dgs_A 82 EVKRAEPRDSKS 93 (99)
T ss_dssp EEEECCCCCCCC
T ss_pred EEEECCCCcccC
Confidence 988887665544
No 53
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=98.82 E-value=4.4e-09 Score=82.61 Aligned_cols=80 Identities=14% Similarity=0.150 Sum_probs=64.4
Q ss_pred cEEEEecCCCCCCchHHHHHHHHHhhc-cceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccce--eeecCCcee
Q 017670 204 TLVVLENLDPSYTSTVVEDLVWHAFKE-NCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGC--LLLSNGRPL 280 (368)
Q Consensus 204 tlV~LqNLDps~ts~dVedLi~~a~ke-~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~c--L~ls~GRPL 280 (368)
..|||.||.|..|.++|+++|..-+.. .+..+++ +...+..+-|.|||-|.+.++|..||..||+.- +.+ +||||
T Consensus 10 ~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~-~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i-~Gr~i 87 (95)
T 2lkz_A 10 DTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLI-KDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKI-DGKTI 87 (95)
T ss_dssp CEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECC-CCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEE-TTEEE
T ss_pred CEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEE-ecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceE-CCEEE
Confidence 469999999999999999999987763 4555544 344456778999999999999999999999863 222 99999
Q ss_pred eeccC
Q 017670 281 LGSIG 285 (368)
Q Consensus 281 ~~S~g 285 (368)
..+.+
T Consensus 88 ~V~~A 92 (95)
T 2lkz_A 88 GVDFA 92 (95)
T ss_dssp EEEEC
T ss_pred EEEEc
Confidence 87654
No 54
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.82 E-value=1.3e-08 Score=77.70 Aligned_cols=85 Identities=15% Similarity=0.112 Sum_probs=68.7
Q ss_pred hcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCcee
Q 017670 201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 280 (368)
Q Consensus 201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL 280 (368)
...+.|||.||.+.+|.+||+++|...+.. ..++++... ..+.|.|||.|.+.++|+.||..||+..| +||+|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v-~~v~i~~~~---~~~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~l 85 (103)
T 2cq3_A 13 STPKRLHVSNIPFRFRDPDLRQMFGQFGKI-LDVEIIFNE---RGSKGFGFVTFENSADADRAREKLHGTVV---EGRKI 85 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHGGGTSCE-EEEEEECCT---TTTCCEEEEEESCHHHHHHHHHHHTTCEE---TTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCe-EEEEEEecC---CCCcEEEEEEECCHHHHHHHHHHhCCCEE---CCEEE
Confidence 456899999999999999999999875543 234444322 23689999999999999999999999987 99999
Q ss_pred eeccCCCCCCCC
Q 017670 281 LGSIGTPCFTGK 292 (368)
Q Consensus 281 ~~S~g~~~~p~k 292 (368)
....+.+..+..
T Consensus 86 ~v~~a~~~~~~~ 97 (103)
T 2cq3_A 86 EVNNATARVMTN 97 (103)
T ss_dssp EEEECCSSCCCC
T ss_pred EEEEcccCCCCC
Confidence 988887665544
No 55
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.82 E-value=6.2e-09 Score=77.91 Aligned_cols=79 Identities=19% Similarity=0.170 Sum_probs=63.7
Q ss_pred hcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCcee
Q 017670 201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 280 (368)
Q Consensus 201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL 280 (368)
..++.|||.||.+.+|.+||+++|...+.. ...++ +.......+.|.|||.|.+.++|+.||..||+..| +||+|
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v-~~v~i-~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~---~g~~l 88 (94)
T 2e5h_A 14 PSKSTVYVSNLPFSLTNNDLYRIFSKYGKV-VKVTI-MKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQL---FGRVI 88 (94)
T ss_dssp CCTTSEEEESCCTTSCHHHHHHHTTTTSCE-EEEEE-CCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEE---TTEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCe-EEEEE-EeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCee---CCcEE
Confidence 356889999999999999999999876543 23333 33333457789999999999999999999999877 89999
Q ss_pred eecc
Q 017670 281 LGSI 284 (368)
Q Consensus 281 ~~S~ 284 (368)
....
T Consensus 89 ~v~~ 92 (94)
T 2e5h_A 89 KASI 92 (94)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 8654
No 56
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.82 E-value=1.1e-08 Score=77.04 Aligned_cols=79 Identities=14% Similarity=0.060 Sum_probs=65.0
Q ss_pred cccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCceee
Q 017670 202 HGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLL 281 (368)
Q Consensus 202 ~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL~ 281 (368)
.++.|||.||.+.+|.+||+++|...+... .++.| ..++.+|.|||.|.+.++|..||..||+.-| +||+|.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~-~~~~i----~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~---~g~~l~ 85 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVE-SCEQV----NTDSETAVVNVTYSSKDQARQALDKLNGFQL---ENFTLK 85 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEE-EEEEE----CCSSSSEEEEEEESSHHHHHHHHHHHTTCBC---SSCBCE
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeE-EEEEe----ecCCCCCEEEEEECCHHHHHHHHHHhCCCEE---CCcEEE
Confidence 568899999999999999999999876532 22212 2246678899999999999999999999877 999999
Q ss_pred eccCCCC
Q 017670 282 GSIGTPC 288 (368)
Q Consensus 282 ~S~g~~~ 288 (368)
...+.+.
T Consensus 86 V~~a~~~ 92 (96)
T 2e44_A 86 VAYIPDE 92 (96)
T ss_dssp EEECCCC
T ss_pred EEEcCcc
Confidence 8877665
No 57
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.81 E-value=7.1e-09 Score=80.31 Aligned_cols=85 Identities=16% Similarity=0.137 Sum_probs=68.5
Q ss_pred hcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCcee
Q 017670 201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 280 (368)
Q Consensus 201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL 280 (368)
..++.|||.||.+.+|.+||+++|...+.. ..++++... +..+.|.|||.|.+.++|+.||..||+..| +||+|
T Consensus 13 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i-~~~~i~~~~--~g~~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~l 86 (114)
T 2do0_A 13 RLGSTVFVANLDYKVGWKKLKEVFSMAGVV-VRADILEDK--DGKSRGIGTVTFEQSIEAVQAISMFNGQLL---FDRPM 86 (114)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCE-EEEEEEECT--TCSEEEEEEEEESSHHHHHHHHHHHTTCEE---TTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCe-EEEEEEECC--CCCeeeEEEEEECCHHHHHHHHHHhCCCEe---CCCEE
Confidence 457899999999999999999999876543 334444332 356678999999999999999999999987 99999
Q ss_pred eeccCCCCCCC
Q 017670 281 LGSIGTPCFTG 291 (368)
Q Consensus 281 ~~S~g~~~~p~ 291 (368)
.........|.
T Consensus 87 ~v~~a~~~~~~ 97 (114)
T 2do0_A 87 HVKMDERALPK 97 (114)
T ss_dssp EEEECSCCCCC
T ss_pred EEEEcccCCCC
Confidence 98876654444
No 58
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.81 E-value=1.7e-08 Score=75.64 Aligned_cols=79 Identities=13% Similarity=0.129 Sum_probs=66.2
Q ss_pred hcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCcee
Q 017670 201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 280 (368)
Q Consensus 201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL 280 (368)
..++.|||.||.+.+|.+||+++|...+. -..++++ .|.|||.|.+.++|+.||..||+..| +||+|
T Consensus 7 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~-v~~~~~~---------~~~afV~f~~~~~a~~A~~~l~g~~~---~g~~l 73 (90)
T 2dnp_A 7 GNTWKIFVGNVSAACTSQELRSLFERRGR-VIECDVV---------KDYAFVHMEKEADAKAAIAQLNGKEV---KGKRI 73 (90)
T ss_dssp CCSCCEEEESCCTTCCHHHHHHHHHHHSC-EEEEEEC---------SSCEEEEESCHHHHHHHHHHHTTCEE---TTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHcCCC-EEEEEEE---------CCEEEEEECCHHHHHHHHHHhCCCEE---CCcEE
Confidence 45788999999999999999999998665 3344443 45899999999999999999999877 99999
Q ss_pred eeccCCCCCCCC
Q 017670 281 LGSIGTPCFTGK 292 (368)
Q Consensus 281 ~~S~g~~~~p~k 292 (368)
......+..+..
T Consensus 74 ~v~~a~~~~~~~ 85 (90)
T 2dnp_A 74 NVELSTKGQKKS 85 (90)
T ss_dssp EEEESCCCCCCC
T ss_pred EEEECCCCCCCC
Confidence 998887765444
No 59
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.81 E-value=1.3e-08 Score=79.20 Aligned_cols=80 Identities=21% Similarity=0.206 Sum_probs=67.3
Q ss_pred cccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCC----
Q 017670 202 HGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNG---- 277 (368)
Q Consensus 202 ~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~G---- 277 (368)
.++.|||.||.+.+|.+||+++|...+. -..++++.. |.|||.|.+.++|..||..||...| +|
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~-i~~~~i~~~--------g~afV~f~~~~~a~~Ai~~l~g~~~---~g~~~~ 81 (108)
T 1x4c_A 14 SENRVVVSGLPPSGSWQDLKDHMREAGD-VCYADVYRD--------GTGVVEFVRKEDMTYAVRKLDNTKF---RSHEGE 81 (108)
T ss_dssp CCCEEEEESCCSSCCHHHHHHHHGGGSC-EEEEEEETT--------TEEEEEESSHHHHHHHHHHSSSEEE---ECTTSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCC-EeEEEEecC--------CEEEEEECCHHHHHHHHHHHCcCCc---cCCcCc
Confidence 5789999999999999999999987653 444544332 9999999999999999999999988 88
Q ss_pred -ceeeeccCCCCCCCCC
Q 017670 278 -RPLLGSIGTPCFTGKQ 293 (368)
Q Consensus 278 -RPL~~S~g~~~~p~k~ 293 (368)
|+|....+.+..+...
T Consensus 82 ~~~i~V~~a~~~~~~~~ 98 (108)
T 1x4c_A 82 TAYIRVKVDGPRSPSYG 98 (108)
T ss_dssp EEEEEEEESSCCSCCCC
T ss_pred ceEEEEEeCCCCCCCCC
Confidence 9999888887666553
No 60
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=98.81 E-value=6.5e-09 Score=78.20 Aligned_cols=81 Identities=15% Similarity=0.162 Sum_probs=63.0
Q ss_pred HhcccEEEEecCCCCCCchHHHHHHHHHhhccc---eecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecC
Q 017670 200 HEHGTLVVLENLDPSYTSTVVEDLVWHAFKENC---SAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSN 276 (368)
Q Consensus 200 ~E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c---~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~ 276 (368)
...++.|||.||.+.+|.+||++.+++.|..-- ..+++ .+..+.|.|||.|.+.++|..|+..||+..+ +
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~----~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~---~ 77 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVS----RSLKMRGQAFVIFKEVSSATNALRSMQGFPF---Y 77 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECC----HHHHHTTCEEEEESSHHHHHHHHHHHTTCEE---T
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEE----cCCCcCcEEEEEeCCHHHHHHHHHHhCCCEE---C
Confidence 456899999999999999999955555554322 22222 1345669999999999999999999999887 9
Q ss_pred CceeeeccCCC
Q 017670 277 GRPLLGSIGTP 287 (368)
Q Consensus 277 GRPL~~S~g~~ 287 (368)
||+|..+.+.+
T Consensus 78 g~~l~v~~a~~ 88 (97)
T 1nu4_A 78 DKPMRIQYAKT 88 (97)
T ss_dssp TEECEEEECSS
T ss_pred CcEEEEEEccC
Confidence 99999877655
No 61
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=98.80 E-value=6.5e-09 Score=77.44 Aligned_cols=82 Identities=22% Similarity=0.136 Sum_probs=63.7
Q ss_pred cEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCceeeec
Q 017670 204 TLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLLGS 283 (368)
Q Consensus 204 tlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL~~S 283 (368)
|.|||.||.+.+|.+||+++|...+.. ..++++ ....+..+.|.|||.|.+.+ |..|+..||+..+ +||+|...
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i-~~v~i~-~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~---~g~~l~V~ 75 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKV-FNVKLI-YDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDF---MGRTIRVT 75 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCC-SEEEEC-CCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCC---SSSSCSEE
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCE-EEEEEE-EcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEE---CCeEEEEE
Confidence 579999999999999999999986653 233333 33344677899999999999 9999999999988 99999988
Q ss_pred cCCCCCCC
Q 017670 284 IGTPCFTG 291 (368)
Q Consensus 284 ~g~~~~p~ 291 (368)
.+.+..+.
T Consensus 76 ~a~~~~~~ 83 (90)
T 2ki2_A 76 EANPKKSL 83 (90)
T ss_dssp EC------
T ss_pred EcCCCCCC
Confidence 87665443
No 62
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=98.80 E-value=1.1e-08 Score=80.44 Aligned_cols=89 Identities=16% Similarity=0.144 Sum_probs=71.2
Q ss_pred HHHhcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCC
Q 017670 198 VAHEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNG 277 (368)
Q Consensus 198 ~A~E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~G 277 (368)
.....++.|||.||.+.+|.+||+++|...+.. ..++++ ....+..+.|.|||.|.+.++|+.|| .||+..| +|
T Consensus 31 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i-~~v~i~-~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~---~g 104 (124)
T 2jwn_A 31 KKEIDKRSVYVGNVDYGSTAQDLEAHFSSCGSI-NRITIL-CDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVF---RG 104 (124)
T ss_dssp HHHHHHTEEEEEEECTTCCHHHHHHHHHTTSCE-EEEEEE-EECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEE---TT
T ss_pred cccCCCCEEEEeCCCCCCCHHHHHHHHHhcCCE-EEEEEE-ecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeE---CC
Confidence 345678999999999999999999999986543 233333 23345677899999999999999999 8999887 99
Q ss_pred ceeeeccCCCCCCCC
Q 017670 278 RPLLGSIGTPCFTGK 292 (368)
Q Consensus 278 RPL~~S~g~~~~p~k 292 (368)
|+|......+..|+.
T Consensus 105 ~~l~V~~a~~~~~~~ 119 (124)
T 2jwn_A 105 RTIKVLPKRTNMPGI 119 (124)
T ss_dssp EECEEEESSCCCSSC
T ss_pred eEEEEEECCCCCCCC
Confidence 999988877665554
No 63
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.80 E-value=9.2e-09 Score=77.30 Aligned_cols=80 Identities=15% Similarity=0.066 Sum_probs=65.5
Q ss_pred hcccEEEEecCCCCCCchHHHHHHHHHhh-ccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhcc-ceeeecCCc
Q 017670 201 EHGTLVVLENLDPSYTSTVVEDLVWHAFK-ENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEE-GCLLLSNGR 278 (368)
Q Consensus 201 E~GtlV~LqNLDps~ts~dVedLi~~a~k-e~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~-~cL~ls~GR 278 (368)
...+.|||.||.+.+|.+||+++|.+.+. .... .+ ++.|.|||.|.+.++|+.||..||+ .-| +||
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~-~~--------~~~g~afV~f~~~~~A~~A~~~l~g~~~~---~g~ 73 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQ-VL--------LKSGYAFVDYPDQNWAIRAIETLSGKVEL---HGK 73 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSC-EE--------EETTEEEECCSCHHHHHHHHHHHTTTCEE---TTE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEE-EE--------cCCCEEEEEECCHHHHHHHHHHccCCeeE---CCE
Confidence 35688999999999999999999999776 2221 11 2478999999999999999999999 766 999
Q ss_pred eeeeccCCCCCCCC
Q 017670 279 PLLGSIGTPCFTGK 292 (368)
Q Consensus 279 PL~~S~g~~~~p~k 292 (368)
+|....+.+.....
T Consensus 74 ~l~v~~a~~~~~~~ 87 (93)
T 2cqh_A 74 IMEVDYSVSKKLRS 87 (93)
T ss_dssp ECEEEECCCCCCCC
T ss_pred EEEEEEccCccccC
Confidence 99988887654443
No 64
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=98.80 E-value=5.5e-09 Score=80.37 Aligned_cols=84 Identities=12% Similarity=0.116 Sum_probs=64.8
Q ss_pred HHHhcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCC
Q 017670 198 VAHEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNG 277 (368)
Q Consensus 198 ~A~E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~G 277 (368)
.....++.|||.||.+.+|.+||+++|...+ -..++|+.....+..+.|.|||.|.+.++|..|| .||+..| +|
T Consensus 14 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G--i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~---~g 87 (100)
T 2j76_E 14 LPKSPPYTAFLGNLPYDVTEESIKEFFRGLN--ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESL---GN 87 (100)
T ss_dssp ------CEEEESCCSSCCSSSHHHHHSCSSC--EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCB---TT
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcC--CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEE---CC
Confidence 4467889999999999999999999998866 4455554433245678899999999999999999 9999877 99
Q ss_pred ceeeeccCCC
Q 017670 278 RPLLGSIGTP 287 (368)
Q Consensus 278 RPL~~S~g~~ 287 (368)
|+|....+.+
T Consensus 88 ~~l~V~~a~~ 97 (100)
T 2j76_E 88 RRIRVDVADQ 97 (100)
T ss_dssp BCCCCEECCC
T ss_pred eEEEEEeccC
Confidence 9998665543
No 65
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=98.79 E-value=8.1e-09 Score=80.34 Aligned_cols=82 Identities=15% Similarity=0.048 Sum_probs=67.4
Q ss_pred HHhcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCc
Q 017670 199 AHEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGR 278 (368)
Q Consensus 199 A~E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GR 278 (368)
.-+.++.|||.||.+.+|.+||.++|...+.. ...+++ .+....|.|||.|.+.++|..||..||+..+ +||
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v-~~v~i~----~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~---~g~ 75 (115)
T 3lqv_A 4 PPEVNRILYIRNLPYKITAEEMYDIFGKYGPI-RQIRVG----NTPETRGTAYVVYEDIFDAKNAVDHLSGFNV---SNR 75 (115)
T ss_dssp CTTCCSEEEEESCCTTCCHHHHHHHHHTTSCE-EEEEEE----CSTTTTTCEEEEESSHHHHHHHHHHHTTCBS---SSC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCe-EEEEEe----eCCCCCcEEEEEECCHHHHHHHHHHcCCCEE---CCe
Confidence 34568999999999999999999999876544 334443 3445589999999999999999999999877 999
Q ss_pred eeeeccCCCC
Q 017670 279 PLLGSIGTPC 288 (368)
Q Consensus 279 PL~~S~g~~~ 288 (368)
+|......+.
T Consensus 76 ~l~v~~a~~~ 85 (115)
T 3lqv_A 76 YLVVLYYNAN 85 (115)
T ss_dssp BCEEEECCHH
T ss_pred EEEEEEecCC
Confidence 9998776543
No 66
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.78 E-value=3e-08 Score=75.71 Aligned_cols=81 Identities=17% Similarity=0.121 Sum_probs=63.0
Q ss_pred HhcccEEEEecCCCCCCchHHH----HHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeec
Q 017670 200 HEHGTLVVLENLDPSYTSTVVE----DLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLS 275 (368)
Q Consensus 200 ~E~GtlV~LqNLDps~ts~dVe----dLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls 275 (368)
...++.|||.||.+.+|.+||+ ++|...+. -..++++.... . -|.|||.|.+.++|..||..||..-|
T Consensus 6 ~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~-v~~v~i~~~~~---~-rg~afV~f~~~~~A~~Ai~~l~g~~~--- 77 (96)
T 2dgx_A 6 SGNGADVQVSNIDYRLSRKELQQLLQEAFARHGK-VKSVELSPHTD---Y-QLKAVVQMENLQDAIGAVNSLHRYKI--- 77 (96)
T ss_dssp CSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSC-EEEEEECSCCS---T-TCCEEEEESSHHHHHHHHHHHTTEEE---
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhccccCc-EEEEEEEeCCC---C-CeEEEEEECCHHHHHHHHHHhCCCEE---
Confidence 3468899999999999999999 66655443 23344332211 1 67899999999999999999999877
Q ss_pred CCceeeeccCCCC
Q 017670 276 NGRPLLGSIGTPC 288 (368)
Q Consensus 276 ~GRPL~~S~g~~~ 288 (368)
+||+|..+.+.+.
T Consensus 78 ~gr~l~V~~a~~~ 90 (96)
T 2dgx_A 78 GSKKILVSLATGA 90 (96)
T ss_dssp TTEEEEEEECCCS
T ss_pred CCeEEEEEEcCCC
Confidence 9999998887654
No 67
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.78 E-value=1.1e-08 Score=80.12 Aligned_cols=84 Identities=17% Similarity=0.184 Sum_probs=67.6
Q ss_pred cccEEEEecCCCCCCchHHH---HHHHHHhhccceecccCCccc--CCCCCceEEEEEechHHHHHHHHhhccceeeecC
Q 017670 202 HGTLVVLENLDPSYTSTVVE---DLVWHAFKENCSAKMIPRVAF--ASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSN 276 (368)
Q Consensus 202 ~GtlV~LqNLDps~ts~dVe---dLi~~a~ke~c~AkmI~~~~y--s~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~ 276 (368)
+.+.|||.||.+.+|.+||. ++|.+.+.. ..++++....+ +..+.|.|||.|.+.++|+.||..||...| +
T Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i-~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~---~ 89 (111)
T 2cpi_A 14 QKNLVFVVGLSQRLADPEVLKRPEYFGKFGKI-HKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVV---D 89 (111)
T ss_dssp CSSCEEEEEECTTTCCHHHHHSTTTTTTTSCE-EEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEE---T
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhhccCCE-EEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEE---C
Confidence 46789999999999999999 888775543 33444444333 336679999999999999999999999988 9
Q ss_pred CceeeeccCCCCC
Q 017670 277 GRPLLGSIGTPCF 289 (368)
Q Consensus 277 GRPL~~S~g~~~~ 289 (368)
||+|....+.+..
T Consensus 90 gr~l~V~~a~~k~ 102 (111)
T 2cpi_A 90 GRTLKASLGTTKY 102 (111)
T ss_dssp TEEEEEESCCCCS
T ss_pred CEEEEEEeccccc
Confidence 9999988876654
No 68
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.78 E-value=8.5e-09 Score=77.18 Aligned_cols=79 Identities=14% Similarity=0.094 Sum_probs=64.8
Q ss_pred hcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCcee
Q 017670 201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 280 (368)
Q Consensus 201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL 280 (368)
..++.|||.||.+..|.+||+++|... .-..++++.. -+..+.|.|||.|.+.++|..||. ||...| +||+|
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~--~i~~v~i~~~--~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~---~gr~i 79 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL--KPVAIRIVRN--AHGNKTGYIFVDFSNEEEVKQALK-CNREYM---GGRYI 79 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS--CCSEEEEEEC--TTSCEEEEEEEECSSHHHHHHHHH-SCSEEE---TTEEE
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC--CceEEEEEEC--CCCCCceEEEEEECCHHHHHHHHH-hCCcee---CCcEE
Confidence 467899999999999999999999876 3444544433 345778999999999999999999 999877 99999
Q ss_pred eeccCCC
Q 017670 281 LGSIGTP 287 (368)
Q Consensus 281 ~~S~g~~ 287 (368)
......+
T Consensus 80 ~v~~a~~ 86 (91)
T 2dgw_A 80 EVFREKS 86 (91)
T ss_dssp EEEEESS
T ss_pred EEEECCc
Confidence 8766544
No 69
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=98.78 E-value=2.6e-08 Score=73.32 Aligned_cols=72 Identities=10% Similarity=0.092 Sum_probs=59.2
Q ss_pred hcccEEEEecCCCCCCchHHHHHHHHHh---h-------ccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccc
Q 017670 201 EHGTLVVLENLDPSYTSTVVEDLVWHAF---K-------ENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEG 270 (368)
Q Consensus 201 E~GtlV~LqNLDps~ts~dVedLi~~a~---k-------e~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~ 270 (368)
...+.|||.||++..|.+||+++|.+.+ . .-...++. +.-|.|||.|.+.++|..|| .||..
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~-------~~kg~afV~f~~~~~a~~A~-~l~g~ 75 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN-------QDKNFAFLEFRSVDETTQAM-AFDGI 75 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEC-------SSSSEEEEEESSHHHHHHHG-GGTTC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEec-------CCCcEEEEEcCCHHHHHHHH-hcCCC
Confidence 4678999999999999999999999974 3 22233322 23799999999999999999 99998
Q ss_pred eeeecCCceeeec
Q 017670 271 CLLLSNGRPLLGS 283 (368)
Q Consensus 271 cL~ls~GRPL~~S 283 (368)
-| +||+|..+
T Consensus 76 ~~---~g~~l~V~ 85 (87)
T 2hzc_A 76 IF---QGQSLKIR 85 (87)
T ss_dssp EE---TTEECEEE
T ss_pred EE---CCeEEEEe
Confidence 77 99998754
No 70
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=98.78 E-value=1.8e-08 Score=86.52 Aligned_cols=83 Identities=19% Similarity=0.151 Sum_probs=68.7
Q ss_pred HhcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCce
Q 017670 200 HEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRP 279 (368)
Q Consensus 200 ~E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRP 279 (368)
.+.++.|||.||.+.+|.+||+++|.+.+.. ..++++... +..+.|.|||.|.+.++|..||..||+..| +||+
T Consensus 85 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I-~~v~i~~d~--~g~~kG~afV~F~~~~~A~~Ai~~lng~~l---~Gr~ 158 (177)
T 2f3j_A 85 VETGAKLLVSNLDFGVSDADIQELFAEFGTL-KKAAVDYDR--SGRSLGTADVHFERRADALKAMKQYKGVPL---DGRP 158 (177)
T ss_dssp CTTCEEEEEECCCSCCCHHHHHHHHHHTSCC-SEEEECCCT--TSSCSCCEEEEESCHHHHHHHHHHSTTCBC---SSSB
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCe-EEEEEEECC--CCCEeeEEEEEeCCHHHHHHHHHHhCCCEE---CCEE
Confidence 4678999999999999999999999986543 444444332 567789999999999999999999999877 9999
Q ss_pred eeeccCCCC
Q 017670 280 LLGSIGTPC 288 (368)
Q Consensus 280 L~~S~g~~~ 288 (368)
|....+.+.
T Consensus 159 l~V~~a~~~ 167 (177)
T 2f3j_A 159 MDIQLVASQ 167 (177)
T ss_dssp CEEEEESSG
T ss_pred EEEEEecCC
Confidence 997776543
No 71
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.77 E-value=6.7e-09 Score=79.02 Aligned_cols=84 Identities=17% Similarity=0.216 Sum_probs=66.8
Q ss_pred hcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCcee
Q 017670 201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 280 (368)
Q Consensus 201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL 280 (368)
...+.|||.||.+.+|.+||+++|... ...+++. ...+..+.|.|||.|.+.++|+.||..||...| +||+|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~----~~~~~~~-~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~---~g~~l 84 (102)
T 2fc8_A 13 QPSKTLFVKGLSEDTTEETLKESFDGS----VRARIVT-DRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEI---DGNKV 84 (102)
T ss_dssp CCCSSEEEECCCTTCCHHHHHHTSTTC----SEEEEEE-CSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEE---TTEEC
T ss_pred CCCCEEEEeCCCCccCHHHHHHHhcCC----eEEEEEe-cCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeE---CCeEE
Confidence 457889999999999999999998843 2333332 223356679999999999999999999999877 99999
Q ss_pred eeccCCCCCCCC
Q 017670 281 LGSIGTPCFTGK 292 (368)
Q Consensus 281 ~~S~g~~~~p~k 292 (368)
....+.+.....
T Consensus 85 ~V~~a~~~~~~~ 96 (102)
T 2fc8_A 85 TLDWAKPKGEGG 96 (102)
T ss_dssp EEEECCCCCSSS
T ss_pred EEEEecCCCCCC
Confidence 988887665443
No 72
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=98.77 E-value=1.1e-08 Score=75.59 Aligned_cols=73 Identities=12% Similarity=0.043 Sum_probs=59.2
Q ss_pred ccEEEEecCCCCC------CchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecC
Q 017670 203 GTLVVLENLDPSY------TSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSN 276 (368)
Q Consensus 203 GtlV~LqNLDps~------ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~ 276 (368)
++.|||.||.+.. |.+||+++|...+.. ..++|+ .-+..+-|.|||.|.+.++|+.||..||+..| +
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i-~~v~i~---~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~---~ 73 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKI-TNDFYP---EEDGKTKGYIFLEYASPAHAVDAVKNADGYKL---D 73 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCE-EEEECC---CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCC---S
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCe-EEEEec---CCCCcEeEEEEEEECCHHHHHHHHHHhcCccc---C
Confidence 5789999999888 568899999876543 334444 23457789999999999999999999999988 9
Q ss_pred Cc-eeee
Q 017670 277 GR-PLLG 282 (368)
Q Consensus 277 GR-PL~~ 282 (368)
|| ||..
T Consensus 74 g~~~l~V 80 (81)
T 2krb_A 74 KQHTFRV 80 (81)
T ss_dssp SSSCCCC
T ss_pred CceeEEe
Confidence 99 8864
No 73
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.77 E-value=9.9e-09 Score=78.66 Aligned_cols=85 Identities=14% Similarity=0.105 Sum_probs=68.1
Q ss_pred hcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCcee
Q 017670 201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 280 (368)
Q Consensus 201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL 280 (368)
...+.|||.||.+.+|.+||+++|... . -..++++. ...+..+.|.|||.|.+.++|+.|| .||...| +||+|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-g-i~~v~i~~-~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~---~g~~l 85 (103)
T 2dng_A 13 EPPYTAYVGNLPFNTVQGDIDAIFKDL-S-IRSVRLVR-DKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALL---GDRSL 85 (103)
T ss_dssp SSCEEEEEESCCTTCCHHHHHHHTTTS-C-EEEEEEEE-CSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEE---TTEEC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhC-C-ceEEEEee-cCCCCccceEEEEEECCHHHHHHHH-hhCCCeE---CCeEE
Confidence 356899999999999999999999886 3 33444332 3334567899999999999999999 9999877 99999
Q ss_pred eeccCCCCCCCC
Q 017670 281 LGSIGTPCFTGK 292 (368)
Q Consensus 281 ~~S~g~~~~p~k 292 (368)
......+..+.+
T Consensus 86 ~V~~a~~~~~~~ 97 (103)
T 2dng_A 86 RVDIAEGRKQDK 97 (103)
T ss_dssp EEEECCCCCCCC
T ss_pred EEEEecCCCCCC
Confidence 988877655544
No 74
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.77 E-value=3.4e-08 Score=74.23 Aligned_cols=78 Identities=14% Similarity=0.150 Sum_probs=64.9
Q ss_pred hcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCcee
Q 017670 201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 280 (368)
Q Consensus 201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL 280 (368)
...+.|||.||.+.+|.+||+++|...+.. ..++++ .|.|||.|.+.++|+.||..||...| +||+|
T Consensus 8 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v-~~v~~~---------~~~afV~f~~~~~a~~A~~~l~g~~~---~g~~l 74 (92)
T 2dgt_A 8 KASTKLHVGNISPTCTNQELRAKFEEYGPV-IECDIV---------KDYAFVHMERAEDAVEAIRGLDNTEF---QGKRM 74 (92)
T ss_dssp CSSEEEEEESCCSSCCHHHHHHHHHTTSCC-CEEEEC---------SSEEEEEESCHHHHHHHHHHHTTEEE---TTEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCe-EEEEEE---------CCEEEEEECCHHHHHHHHHHhCCCee---CCcEE
Confidence 457899999999999999999999886543 334333 44899999999999999999999987 99999
Q ss_pred eeccCCCCCCC
Q 017670 281 LGSIGTPCFTG 291 (368)
Q Consensus 281 ~~S~g~~~~p~ 291 (368)
......+....
T Consensus 75 ~V~~a~~~~~~ 85 (92)
T 2dgt_A 75 HVQLSTSRLRT 85 (92)
T ss_dssp EEEESSCCCSC
T ss_pred EEEEccCCCCC
Confidence 98888665443
No 75
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.77 E-value=3.4e-08 Score=75.15 Aligned_cols=79 Identities=20% Similarity=0.196 Sum_probs=64.7
Q ss_pred hcccEEEEecCCCCCCchHHHHHHHHHh-hccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCce
Q 017670 201 EHGTLVVLENLDPSYTSTVVEDLVWHAF-KENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRP 279 (368)
Q Consensus 201 E~GtlV~LqNLDps~ts~dVedLi~~a~-ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRP 279 (368)
...+.|||.||.+.+|.+||+++|...+ ..-...++ .-|.|||.|.+.++|..||..||..-| +||+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~---------~~g~afV~f~~~~~A~~A~~~l~g~~~---~g~~ 80 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKK---------IRDYAFVHFSNREDAVEAMKALNGKVL---DGSP 80 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEE---------CSSEEEEEESSHHHHHHHHHHHSSEEE---TTEE
T ss_pred CCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEE---------eCCeEEEEeCCHHHHHHHHHHhCCCEe---CCcE
Confidence 4578999999999999999999999873 22223322 258999999999999999999999977 8999
Q ss_pred eeeccCCCCCCC
Q 017670 280 LLGSIGTPCFTG 291 (368)
Q Consensus 280 L~~S~g~~~~p~ 291 (368)
|....+.+....
T Consensus 81 l~v~~a~~~~~~ 92 (99)
T 2cpd_A 81 IEVTLAKPVDKD 92 (99)
T ss_dssp EEEECCCCCCCC
T ss_pred EEEEECCCCCCC
Confidence 998888765443
No 76
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=98.77 E-value=7.5e-09 Score=77.95 Aligned_cols=79 Identities=14% Similarity=0.167 Sum_probs=65.0
Q ss_pred HhcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCce
Q 017670 200 HEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRP 279 (368)
Q Consensus 200 ~E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRP 279 (368)
.+.++.|||.||.+.+|.+||+++|...+.. +.+ .....+.|.|||.|.+.++|..||..||+..| +||+
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v----~~~---~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~ 82 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEI----RLV---SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEI---DGRS 82 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEE----CCE---EETTEEEEEEEEEESSHHHHHHHHHHTTEEEE---TTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcE----EEe---CCCCCcceEEEEEECCHHHHHHHHHHhCCCEE---CCeE
Confidence 4578999999999999999999999875422 223 34456789999999999999999999999877 9999
Q ss_pred eeeccCCCC
Q 017670 280 LLGSIGTPC 288 (368)
Q Consensus 280 L~~S~g~~~ 288 (368)
|......+.
T Consensus 83 l~v~~a~~~ 91 (96)
T 1fjc_A 83 VSLYYTGEK 91 (96)
T ss_dssp EEEEECSSS
T ss_pred EEEEEcCCC
Confidence 997766543
No 77
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=98.76 E-value=9.7e-09 Score=83.70 Aligned_cols=85 Identities=12% Similarity=0.031 Sum_probs=68.5
Q ss_pred hcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCcee
Q 017670 201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 280 (368)
Q Consensus 201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL 280 (368)
+.++.|||.||.+.+|.+||+++|...+.. ...+++ ....+..+.|.|||.|.+.++|+.||..||+..| +||+|
T Consensus 44 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I-~~v~i~-~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i---~g~~l 118 (129)
T 2kxn_B 44 DPNCCLGVFGLSLYTTERDLREVFSKYGPI-ADVSIV-YDQQSRRSRGFAFVYFENVDDAKEAKERANGMEL---DGRRI 118 (129)
T ss_dssp CCSSCBCEETCTTSCCHHHHHHHHTTTSCE-EEEEEE-CCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCS---SSSCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCe-EEEEEE-ecCCCCccceEEEEEECCHHHHHHHHHHhCCCEE---CCEEE
Confidence 457899999999999999999999876543 333333 2333457789999999999999999999999877 99999
Q ss_pred eeccCCCCCC
Q 017670 281 LGSIGTPCFT 290 (368)
Q Consensus 281 ~~S~g~~~~p 290 (368)
......+..|
T Consensus 119 ~V~~a~~~~p 128 (129)
T 2kxn_B 119 RVDFSITKRP 128 (129)
T ss_dssp EESCCSSSSC
T ss_pred EEEEecCCCC
Confidence 9877766544
No 78
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.76 E-value=4.4e-09 Score=80.01 Aligned_cols=84 Identities=15% Similarity=0.093 Sum_probs=67.1
Q ss_pred HhcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCce
Q 017670 200 HEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRP 279 (368)
Q Consensus 200 ~E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRP 279 (368)
.+..+.|||.||.+.+|.+||+++|...+.. ...+++. ...+..+.|.|||.|.+.++|..||..||+..+ +||+
T Consensus 5 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i-~~~~i~~-~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~ 79 (104)
T 1p1t_A 5 DRSLRSVFVGNIPYEATEEQLKDIFSEVGPV-VSFRLVY-DRETGKPKGYGFCEYQDQETALSAMRNLNGREF---SGRA 79 (104)
T ss_dssp HHHHSCEEEESCCTTSCHHHHHHHHHTTSCC-SEEEEEE-ETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSC---SSSC
T ss_pred CCCccEEEEeCCCCcCCHHHHHHHHHhcCCe-eEEEEEe-CCCCCccceEEEEEECCHHHHHHHHHHhCCCee---CCcE
Confidence 4567899999999999999999999886543 3333332 223456679999999999999999999999887 9999
Q ss_pred eeeccCCCC
Q 017670 280 LLGSIGTPC 288 (368)
Q Consensus 280 L~~S~g~~~ 288 (368)
|......+.
T Consensus 80 l~v~~a~~~ 88 (104)
T 1p1t_A 80 LRVDNAASE 88 (104)
T ss_dssp BEEEETTCT
T ss_pred EEEEeCCCc
Confidence 997766543
No 79
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=98.75 E-value=2.3e-08 Score=79.27 Aligned_cols=78 Identities=18% Similarity=0.159 Sum_probs=64.0
Q ss_pred cccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCceee
Q 017670 202 HGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLL 281 (368)
Q Consensus 202 ~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL~ 281 (368)
.++.|||.||.+.+|.+||+++|...+... ..+ |+....+..+.|.|||.|.+.++|..||..||+.-| +||+|.
T Consensus 62 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~-~v~-i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~l~ 136 (140)
T 2ku7_A 62 TKRVLYVGGLAEEVDDKVLHAAFIPFGDIT-DIQ-IPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESEL---FGRTIR 136 (140)
T ss_dssp SCCEEEEECCCTTCCHHHHHHHHGGGSCEE-EEE-CCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEE---TTEEEE
T ss_pred CCcEEEEEeCCCCCCHHHHHHHHHhcCCEE-EEE-EeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEE---CCEEEE
Confidence 589999999999999999999998765432 333 333444567889999999999999999999999877 899997
Q ss_pred ecc
Q 017670 282 GSI 284 (368)
Q Consensus 282 ~S~ 284 (368)
-..
T Consensus 137 v~~ 139 (140)
T 2ku7_A 137 VNL 139 (140)
T ss_dssp EEC
T ss_pred EEe
Confidence 543
No 80
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.75 E-value=3.5e-08 Score=80.40 Aligned_cols=83 Identities=18% Similarity=0.118 Sum_probs=65.9
Q ss_pred hcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCcee
Q 017670 201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 280 (368)
Q Consensus 201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL 280 (368)
..++.|||.||.+.+|.+||+++|..-+. -..++++.. -|.|||-|.+.++|..||..|+..-..+ +||||
T Consensus 14 ~~~~~LfV~nLp~~vte~dL~~lF~~fG~-V~~v~i~~~-------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l-~Gr~l 84 (105)
T 1sjq_A 14 VPSRVIHIRKLPIDVTEGEVISLGLPFGK-VTNLLMLKG-------KNQAFIEMNTEEAANTMVNYYTSVTPVL-RGQPI 84 (105)
T ss_dssp CCCCEEEECSCCTTSCHHHHHHHHHHHCC-EEEEEEETT-------TTEEEEEESSHHHHHHHHHHHTTSCCEE-TTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCC-EEEEEEEcC-------CCEEEEEECCHHHHHHHHHHhccCCceE-CCEEE
Confidence 45789999999999999999999988654 445556542 5999999999999999999997521122 89999
Q ss_pred eeccCCCCCCCC
Q 017670 281 LGSIGTPCFTGK 292 (368)
Q Consensus 281 ~~S~g~~~~p~k 292 (368)
....+.+.....
T Consensus 85 ~V~~A~~~~~~~ 96 (105)
T 1sjq_A 85 YIQFSNHKELKT 96 (105)
T ss_dssp CBCCCSSSSCCC
T ss_pred EEEEcCCCCCCc
Confidence 988876655444
No 81
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=98.75 E-value=1.9e-08 Score=72.67 Aligned_cols=73 Identities=16% Similarity=0.084 Sum_probs=59.3
Q ss_pred EEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCceeeecc
Q 017670 206 VVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLLGSI 284 (368)
Q Consensus 206 V~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL~~S~ 284 (368)
|||.||.+..|.+||+++|.+.+.. ...++ +....+..+.|.|||.|.+.++|+.|+. +|...+ +||+|....
T Consensus 2 l~v~nlp~~~t~~~l~~~F~~~G~i-~~v~i-~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~---~g~~l~v~~ 74 (75)
T 2mss_A 2 IFVGGLSVNTTVEDVKHYFEQFGKV-DDAML-MFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEI---NNKMVECKK 74 (75)
T ss_dssp EEEECCCSSCCHHHHHHHHHTTSCC-SEECC-CBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCS---SSCCCEEEC
T ss_pred EEEecCCCCCCHHHHHHHHHhcCCE-EEEEE-EecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEE---CCEEEEEEe
Confidence 8999999999999999999886543 33333 3334456788999999999999999998 888877 999987643
No 82
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=98.75 E-value=2.9e-08 Score=75.59 Aligned_cols=76 Identities=18% Similarity=0.044 Sum_probs=63.7
Q ss_pred cEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCceeeec
Q 017670 204 TLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLLGS 283 (368)
Q Consensus 204 tlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL~~S 283 (368)
|.|||.||.+.+|.+||+++|...+.. ...+++.. +.|.|||.|.+.++|+.||..||+..+ +||+|...
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i-~~v~i~~~------~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~l~V~ 70 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPL-RTVWIARN------PPGFAFVEFEDPRDAEDAVRGLDGKVI---CGSRVRVE 70 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCC-SEEEEESS------SSSEEEEECSSHHHHHHHHHHHHHSCS---SSCCCEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCe-EEEEEeeC------CCCEEEEEECCHHHHHHHHHHHCCCeE---CCcEEEEE
Confidence 579999999999999999999987754 33333332 789999999999999999999999877 99999988
Q ss_pred cCCCCC
Q 017670 284 IGTPCF 289 (368)
Q Consensus 284 ~g~~~~ 289 (368)
.+.+..
T Consensus 71 ~a~~~~ 76 (101)
T 2hvz_A 71 LSTGMP 76 (101)
T ss_dssp ESSSCC
T ss_pred EccCCC
Confidence 776544
No 83
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.75 E-value=9.3e-09 Score=74.15 Aligned_cols=75 Identities=12% Similarity=0.090 Sum_probs=59.9
Q ss_pred cEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCceeeec
Q 017670 204 TLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLLGS 283 (368)
Q Consensus 204 tlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL~~S 283 (368)
|.|||.||.+..|.+||+++|...+... ..++ ++..-+..+.|.|||.|.+.++|+.|+..++ ..+ +||+|...
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~-~v~i-~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~---~g~~l~v~ 74 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVK-ECLV-MRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HEL---DSKTIDPK 74 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCC-CEEE-ECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCC---SSCCCEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEE-EEEE-ecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-Ccc---CCEEEEEE
Confidence 4689999999999999999998866532 2333 3333446778999999999999999999999 555 99998765
Q ss_pred c
Q 017670 284 I 284 (368)
Q Consensus 284 ~ 284 (368)
.
T Consensus 75 ~ 75 (77)
T 1uaw_A 75 V 75 (77)
T ss_dssp E
T ss_pred e
Confidence 4
No 84
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=98.74 E-value=1e-08 Score=78.09 Aligned_cols=80 Identities=14% Similarity=0.137 Sum_probs=63.8
Q ss_pred hcccEEEEecCCCCCCchHHHHHHHHHhhccce-------ecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceee
Q 017670 201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCS-------AKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLL 273 (368)
Q Consensus 201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~-------AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ 273 (368)
...+.|||.||.+.+|.+||+++|...+..... ++++. ...+....|.|||.|.+.++|..||..||+..|
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~-~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~- 88 (99)
T 2la6_A 11 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYT-DRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF- 88 (99)
T ss_dssp CCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEE-CTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBS-
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEe-cCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEe-
Confidence 357899999999999999999999987654421 33322 223356779999999999999999999999977
Q ss_pred ecCCceeeecc
Q 017670 274 LSNGRPLLGSI 284 (368)
Q Consensus 274 ls~GRPL~~S~ 284 (368)
+||+|....
T Consensus 89 --~g~~l~V~~ 97 (99)
T 2la6_A 89 --SGNPIKVSF 97 (99)
T ss_dssp --SSSBCEEEE
T ss_pred --CCcEEEEEe
Confidence 899998654
No 85
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=98.74 E-value=1.2e-08 Score=80.61 Aligned_cols=79 Identities=24% Similarity=0.196 Sum_probs=64.0
Q ss_pred ccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCceeee
Q 017670 203 GTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLLG 282 (368)
Q Consensus 203 GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL~~ 282 (368)
.|.|||.||++.+|.+||+++|.+.+.. ..++++... +.+-|.|||.|.+.++|+.||..||...| +||+|..
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v-~~v~i~~d~---~~~kg~afV~f~~~~~A~~Ai~~l~~~~~---~g~~i~V 77 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNI-LSCKVVCDE---NGSKGYGFVHFETQEAAERAIEKMNGMLL---NDRKVFV 77 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCE-EEEEEEEET---TEEEEEEEEEESCHHHHHHHHHHHTTCEE---TTEECEE
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCE-EEEEEeecC---CCCCceEEEEECCHHHHHHHHHHcCCCEE---CCEEEEE
Confidence 4679999999999999999999886543 344444321 23458999999999999999999999987 9999998
Q ss_pred ccCCCC
Q 017670 283 SIGTPC 288 (368)
Q Consensus 283 S~g~~~ 288 (368)
....+.
T Consensus 78 ~~a~~~ 83 (115)
T 4f25_A 78 GRFKSR 83 (115)
T ss_dssp EESSCC
T ss_pred EECCCc
Confidence 776543
No 86
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=98.74 E-value=1e-08 Score=80.75 Aligned_cols=85 Identities=16% Similarity=0.114 Sum_probs=67.8
Q ss_pred HHHhcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCC
Q 017670 198 VAHEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNG 277 (368)
Q Consensus 198 ~A~E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~G 277 (368)
.+...++.|||.||.+.+|.+||+++|...+.. ...+++ ....+..+.|.|||.|.+.++|..||..||+..| +|
T Consensus 21 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i-~~v~i~-~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i---~g 95 (108)
T 2jrs_A 21 KGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRI-ESIQLM-MDSETGRSKGYGFITFSDSECAKKALEQLNGFEL---AG 95 (108)
T ss_dssp CSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCE-EEEEEE-EETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCS---SS
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCe-EEEEEE-EcCCCCccceEEEEEECCHHHHHHHHHHcCCCEE---CC
Confidence 344567999999999999999999999876543 334333 2233456679999999999999999999999877 99
Q ss_pred ceeeeccCCC
Q 017670 278 RPLLGSIGTP 287 (368)
Q Consensus 278 RPL~~S~g~~ 287 (368)
|+|..+.+.+
T Consensus 96 ~~l~V~~a~~ 105 (108)
T 2jrs_A 96 RPMKVGHVTE 105 (108)
T ss_dssp SCCEEECSCS
T ss_pred EEEEEEEccc
Confidence 9999877654
No 87
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=98.74 E-value=1.6e-08 Score=79.02 Aligned_cols=79 Identities=16% Similarity=0.112 Sum_probs=64.1
Q ss_pred hcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCcee
Q 017670 201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 280 (368)
Q Consensus 201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL 280 (368)
..++.|||.||.+.+|.+||+++|...+.. ...+++ +...+..+.|.|||.|.+.++|+.||..||+..| +||+|
T Consensus 38 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i-~~~~i~-~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~---~g~~l 112 (118)
T 2khc_A 38 PEGCNLFIYHLPQEFTDTDLASTFLPFGNV-ISAKVF-IDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQV---GTKRL 112 (118)
T ss_dssp CCSEEEEEECSCTTCCHHHHHHHTTTSCEE-EEEEEC-CCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEE---TTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCE-EEEEEE-eCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEE---CCEEE
Confidence 457999999999999999999999875542 334333 2334567889999999999999999999999887 99998
Q ss_pred eecc
Q 017670 281 LGSI 284 (368)
Q Consensus 281 ~~S~ 284 (368)
....
T Consensus 113 ~V~~ 116 (118)
T 2khc_A 113 KVQL 116 (118)
T ss_dssp CEEE
T ss_pred EEEe
Confidence 7543
No 88
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=98.73 E-value=2.7e-08 Score=79.74 Aligned_cols=87 Identities=11% Similarity=0.045 Sum_probs=69.1
Q ss_pred hcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCcee
Q 017670 201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 280 (368)
Q Consensus 201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL 280 (368)
+..+.|||.||.+.+|.+||.++|...+.. ..++++. ...+..+.|.|||.|.+.++|+.||..||+..| +||+|
T Consensus 40 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i-~~v~i~~-~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~l 114 (139)
T 1u6f_A 40 DVLRNLMVNYIPTTVDEVQLRQLFERYGPI-ESVKIVC-DRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNI---LNKRL 114 (139)
T ss_dssp TTTSEEEEESCSTTCCHHHHHHHHHHHSCE-EEEEEEE-ETTTTEEEEEEEEEESSHHHHHHHHHHTTTEEC---SSCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCe-EEEEEEE-cCCCCCcceEEEEEECCHHHHHHHHHHhCCCEE---CCeEE
Confidence 457899999999999999999999987653 2333332 222355678999999999999999999999877 99999
Q ss_pred eeccCCCCCCCC
Q 017670 281 LGSIGTPCFTGK 292 (368)
Q Consensus 281 ~~S~g~~~~p~k 292 (368)
....+.+....+
T Consensus 115 ~v~~a~~~~~~~ 126 (139)
T 1u6f_A 115 KVALAASGHQRP 126 (139)
T ss_dssp EEEESSCCCCCC
T ss_pred EEEECCCCCCCC
Confidence 988876654433
No 89
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=98.73 E-value=2.4e-08 Score=80.92 Aligned_cols=78 Identities=14% Similarity=0.106 Sum_probs=65.5
Q ss_pred hcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCcee
Q 017670 201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 280 (368)
Q Consensus 201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL 280 (368)
.-+++|||+||.+.+|.+||++||..- +.-..++|++ .-|.|||.|.+.++|..||..||+.-+.+ +||||
T Consensus 19 ~ps~~l~V~NLp~~~te~~L~~lF~~f-G~V~~v~i~~-------~kg~AFVef~~~~~A~~Av~~ln~~~~~i-~Gr~i 89 (100)
T 3r27_A 19 PASPVVHIRGLIDGVVEADLVEALQEF-GPISYVVVMP-------KKRQALVEFEDVLGACNAVNYAADNQIYI-AGHPA 89 (100)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHGGG-SCEEEEEEET-------TTTEEEEEESSHHHHHHHHHHHHHSCEEE-TTEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhcc-CCEEEEEEEc-------CCCEEEEEECCHHHHHHHHHHhcCCCcee-CCcEE
Confidence 467899999999999999999999874 4556777764 35899999999999999999999876544 99999
Q ss_pred eeccCCC
Q 017670 281 LGSIGTP 287 (368)
Q Consensus 281 ~~S~g~~ 287 (368)
+-.....
T Consensus 90 ~V~~S~~ 96 (100)
T 3r27_A 90 FVNYSTS 96 (100)
T ss_dssp EEEECSC
T ss_pred EEEeccc
Confidence 9776543
No 90
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.73 E-value=4.2e-08 Score=73.45 Aligned_cols=79 Identities=16% Similarity=0.084 Sum_probs=65.1
Q ss_pred hcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCcee
Q 017670 201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 280 (368)
Q Consensus 201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL 280 (368)
+..+.|||.||.+.+|.+||+++|...+.. ...+++ .|.|||.|.+.++|+.||..||...| +||+|
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i-~~v~~~---------~g~afV~f~~~~~A~~A~~~l~g~~~---~g~~l 72 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKV-LECDII---------KNYGFVHIEDKTAAEDAIRNLHHYKL---HGVNI 72 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCE-EEEEEE---------TTEEEEEESSHHHHHHHHHHHTTCBC---SSCBC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCE-EEEEEE---------CCEEEEEECCHHHHHHHHHHhcCCcc---CCcEE
Confidence 456899999999999999999999886543 233333 58999999999999999999999877 99999
Q ss_pred eeccCCCCCCCC
Q 017670 281 LGSIGTPCFTGK 292 (368)
Q Consensus 281 ~~S~g~~~~p~k 292 (368)
......+..+..
T Consensus 73 ~v~~a~~~~~~~ 84 (90)
T 2dnq_A 73 NVEASKNKSKAS 84 (90)
T ss_dssp EEECSSCCCCCC
T ss_pred EEEECCCCCCCC
Confidence 988876655443
No 91
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.73 E-value=1.1e-08 Score=79.35 Aligned_cols=83 Identities=17% Similarity=0.217 Sum_probs=64.9
Q ss_pred hcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhcccee-----eec
Q 017670 201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCL-----LLS 275 (368)
Q Consensus 201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL-----~ls 275 (368)
...+.|||.||.+.+|.+||+++|...+. -..++++... +..+-|.|||.|.+.++|+.||..||+..| +..
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~-i~~~~i~~~~--~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~ 99 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQ-VISTRILRDS--SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSA 99 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSC-EEEEEEEECS--SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCC-EEEEEEEECC--CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccC
Confidence 35689999999999999999999987554 3344444332 567789999999999999999999999877 222
Q ss_pred CCceeeeccCC
Q 017670 276 NGRPLLGSIGT 286 (368)
Q Consensus 276 ~GRPL~~S~g~ 286 (368)
.||||......
T Consensus 100 ~~~~l~v~~a~ 110 (114)
T 1x5o_A 100 PTEPLLCKFSG 110 (114)
T ss_dssp CSSCBEEEECC
T ss_pred CCCceeEEccC
Confidence 57778776665
No 92
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=98.73 E-value=1.7e-08 Score=82.72 Aligned_cols=88 Identities=17% Similarity=0.139 Sum_probs=71.0
Q ss_pred HhcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCce
Q 017670 200 HEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRP 279 (368)
Q Consensus 200 ~E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRP 279 (368)
.+.++.|||.||.+.+|.+||+++|...+.. ..++++ .......+.|.|||.|.+.++|+.||..||+..| +||+
T Consensus 44 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i-~~v~i~-~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i---~g~~ 118 (135)
T 2lea_A 44 VEGMTSLKVDNLTYRTSPDTLRRVFEKYGRV-GDVYIP-RDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVL---DGRE 118 (135)
T ss_dssp GGGCCCEEEECCCSSCHHHHHHHHHGGGSCC-SEEECC-CCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCS---SSSC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCE-EEEEEE-ecCCCCccceEEEEEECCHHHHHHHHHHcCCCEE---CCEE
Confidence 3568999999999999999999999886643 333333 3334467889999999999999999999999987 9999
Q ss_pred eeeccCCCCCCCC
Q 017670 280 LLGSIGTPCFTGK 292 (368)
Q Consensus 280 L~~S~g~~~~p~k 292 (368)
|......+..|..
T Consensus 119 l~V~~a~~~~~~~ 131 (135)
T 2lea_A 119 LRVQMARYGRPPD 131 (135)
T ss_dssp CEEEECCCCCCCT
T ss_pred EEEEECCCCCCCc
Confidence 9988876655443
No 93
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=98.72 E-value=4.2e-08 Score=75.38 Aligned_cols=79 Identities=16% Similarity=0.159 Sum_probs=65.8
Q ss_pred hcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCcee
Q 017670 201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 280 (368)
Q Consensus 201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL 280 (368)
...+.|||.||.+.+|.+||+++|...+.. ..++++ .|.|||.|.+.++|..||..||...| +||+|
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i-~~v~~~---------~~~afV~f~~~~~a~~A~~~l~g~~~---~g~~l 75 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKL-ERVKKL---------KDYAFIHFDERDGAVKAMEEMNGKDL---EGENI 75 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCE-EEEEEC---------SSCEEEEESSHHHHHHHHHHHTTEEE---TTEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCE-EEEEEE---------CCEEEEEeCCHHHHHHHHHHHCCCcc---CCCEE
Confidence 456899999999999999999999986653 233332 46899999999999999999999977 89999
Q ss_pred eeccCCCCCCCC
Q 017670 281 LGSIGTPCFTGK 292 (368)
Q Consensus 281 ~~S~g~~~~p~k 292 (368)
......+....+
T Consensus 76 ~v~~a~~~~~~~ 87 (103)
T 2dgu_A 76 EIVFAKPPDQKR 87 (103)
T ss_dssp EEEECCCCCCCC
T ss_pred EEEEcCCCcccc
Confidence 998887665544
No 94
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.72 E-value=4.8e-08 Score=76.27 Aligned_cols=82 Identities=16% Similarity=0.038 Sum_probs=66.2
Q ss_pred hcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCcee
Q 017670 201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 280 (368)
Q Consensus 201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL 280 (368)
...+.|||.||.+.+|.+||+++|...+.. ..++++ .......+.|.|||.|.+.++|+.||..+|. .| +||+|
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i-~~v~i~-~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~---~g~~l 88 (116)
T 2cqd_A 15 TTFTKIFVGGLPYHTTDASLRKYFEGFGDI-EEAVVI-TDRQTGKSRGYGFVTMADRAAAERACKDPNP-II---DGRKA 88 (116)
T ss_dssp CSSSEEEEECCCSSCCHHHHHHHHHTTSCE-EEEEES-CCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EE---TTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCe-eEEEEE-EcCCCCccceEEEEEECCHHHHHHHHHhCCC-cC---CCEEE
Confidence 457899999999999999999999875543 334333 3334467889999999999999999999996 55 89999
Q ss_pred eeccCCCC
Q 017670 281 LGSIGTPC 288 (368)
Q Consensus 281 ~~S~g~~~ 288 (368)
......+.
T Consensus 89 ~V~~a~~~ 96 (116)
T 2cqd_A 89 NVNLAYLG 96 (116)
T ss_dssp EEEESTTT
T ss_pred EEEEcccC
Confidence 98887543
No 95
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.72 E-value=2.5e-08 Score=78.82 Aligned_cols=74 Identities=12% Similarity=-0.017 Sum_probs=62.3
Q ss_pred cccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCceee
Q 017670 202 HGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLL 281 (368)
Q Consensus 202 ~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL~ 281 (368)
.++.|||.||.+.+|.+||+++|...+.. ..++|+ +.-|.|||.|.+.++|..||..||...| +||||.
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i-~~v~i~-------~~~g~afV~f~~~~~A~~Ai~~l~g~~~---~g~~l~ 77 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSL-GRVLLP-------EGGITAIVEFLEPLEARKAFRHLAYSKF---HHVPLY 77 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCE-EEEECC-------SSSSCEEEEESCHHHHHHHHHHHTTCBS---SSSBCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCE-EEEEEe-------CCCCEEEEEeCCHHHHHHHHHHhCCCEE---CCeEEE
Confidence 47899999999999999999999986654 334443 2457899999999999999999999887 999998
Q ss_pred eccCC
Q 017670 282 GSIGT 286 (368)
Q Consensus 282 ~S~g~ 286 (368)
...+.
T Consensus 78 V~~a~ 82 (111)
T 1whx_A 78 LEWAP 82 (111)
T ss_dssp EEEEE
T ss_pred EEECC
Confidence 76653
No 96
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=98.72 E-value=3.8e-08 Score=79.76 Aligned_cols=108 Identities=14% Similarity=0.110 Sum_probs=79.4
Q ss_pred HhcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCce
Q 017670 200 HEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRP 279 (368)
Q Consensus 200 ~E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRP 279 (368)
...++.|||.||.+.+|.+||+++|.+.|.... .+........+-|.|||.|.+.++|..|| +||+..| +||+
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~---~~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~---~g~~ 82 (175)
T 1fje_B 10 STTPFNLFIGNLNPNKSVAELKVAISELFAKND---LAVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKV---FGNE 82 (175)
T ss_dssp CSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT---CCCCEEEEETTTTEEEEEESSHHHHHHHH-HGGGEEE---TTEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce---EEEEECCCCccccEEEEEECCHHHHHHHH-hcCCCEe---CCeE
Confidence 346789999999999999999999999887643 22223344678899999999999999999 6999877 8999
Q ss_pred eeeccCCCCCCCC----CCccccceehhhHHHHHHHHHHhhhc
Q 017670 280 LLGSIGTPCFTGK----QSKFVGHLALDKLKFQMQREMREAVS 318 (368)
Q Consensus 280 L~~S~g~~~~p~k----~s~f~GHl~i~k~r~q~qrEmr~AVS 318 (368)
|......+..... ..-|+|.|.-+- ..+++++..+
T Consensus 83 l~v~~~~~~~~~~~~~~~~l~v~nlp~~~----t~~~l~~~F~ 121 (175)
T 1fje_B 83 IKLEKPKGRDSKKVRAARTLLAKNLSFNI----TEDELKEVFE 121 (175)
T ss_dssp EEEECCCCSSCSTTGGGGEEEEESCCSSC----CHHHHHHHCT
T ss_pred EEEecCCCccccccccCCEEEEeCCCCCC----CHHHHHHHHH
Confidence 9988776543322 344666665432 2345555443
No 97
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=98.71 E-value=2.1e-08 Score=82.24 Aligned_cols=90 Identities=16% Similarity=0.072 Sum_probs=71.5
Q ss_pred HHHhcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCC
Q 017670 198 VAHEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNG 277 (368)
Q Consensus 198 ~A~E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~G 277 (368)
.+.+..+.|||.||.+.+|.+||+++|...+... .++++. ...+..+.|.|||.|.+.++|+.||..||...| +|
T Consensus 34 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~-~v~i~~-~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~---~g 108 (156)
T 1h2v_Z 34 KLLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIK-KIIMGL-DKMKKTACGFCFVEYYSRADAENAMRYINGTRL---DD 108 (156)
T ss_dssp TTTTTCCEEEEESCCTTCCHHHHHHHHGGGSCEE-EEEEEE-CTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEE---TT
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeE-EEEEEe-cCCCCccceEEEEEECCHHHHHHHHHHhCCCEE---CC
Confidence 3456789999999999999999999998766532 333332 222345678999999999999999999999888 99
Q ss_pred ceeeeccCCCCCCCC
Q 017670 278 RPLLGSIGTPCFTGK 292 (368)
Q Consensus 278 RPL~~S~g~~~~p~k 292 (368)
++|......+..+.+
T Consensus 109 ~~l~V~~a~~~~~~~ 123 (156)
T 1h2v_Z 109 RIIRTDWDAGFKEGR 123 (156)
T ss_dssp EECEEEEESCCCTTC
T ss_pred eEEEEEECCCCCCcC
Confidence 999988887655544
No 98
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=98.71 E-value=1.7e-08 Score=80.50 Aligned_cols=79 Identities=14% Similarity=0.136 Sum_probs=64.2
Q ss_pred cccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCceee
Q 017670 202 HGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLL 281 (368)
Q Consensus 202 ~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL~ 281 (368)
..+.|||.||++.+|.+||+++|...+.. ..++++ .......+-|.|||.|.+.++|+.||..||...| +||+|.
T Consensus 5 p~~~lfV~nL~~~~te~~L~~~F~~~G~i-~~v~i~-~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~---~gr~i~ 79 (110)
T 3s8s_A 5 PLKEVTFARLNDNVRETFLKDMCRKYGEV-EEVEIL-LHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSV---MGNIIH 79 (110)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCE-EEEEEE-ECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEE---TTEECE
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCe-eEEEEE-ECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEE---CCeEEE
Confidence 35789999999999999999999876543 344333 3334456789999999999999999999999988 999998
Q ss_pred eccC
Q 017670 282 GSIG 285 (368)
Q Consensus 282 ~S~g 285 (368)
....
T Consensus 80 V~~a 83 (110)
T 3s8s_A 80 AQLD 83 (110)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 6544
No 99
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=98.70 E-value=4.6e-08 Score=79.07 Aligned_cols=72 Identities=15% Similarity=0.143 Sum_probs=61.6
Q ss_pred ccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCceeee
Q 017670 203 GTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLLG 282 (368)
Q Consensus 203 GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL~~ 282 (368)
.+-||+.||++..|.+++++||.+.+...- .+++ ++-|.|||.|.+.++|+.||+.||+.-| +||||..
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~-~~l~-------~~kGfaFVey~~~~eA~~Ai~~Ln~~~l---~gr~I~V 75 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVS-FHPY-------LNQGIALCKYTTREEANKAQMALNNCVL---ANTTIFA 75 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEE-EEEE-------TTTTEEEEEESSHHHHHHHHHHHTTEEE---TTEEEEE
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEE-EEEc-------CCCcEEEEEECCHHHHHHHHHHhcCCEE---CCcEEEE
Confidence 456899999999999999999999887532 2222 3689999999999999999999999777 9999997
Q ss_pred ccC
Q 017670 283 SIG 285 (368)
Q Consensus 283 S~g 285 (368)
..+
T Consensus 76 ~~A 78 (89)
T 2wbr_A 76 ESP 78 (89)
T ss_dssp ECC
T ss_pred EEC
Confidence 766
No 100
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=98.69 E-value=3.9e-08 Score=77.25 Aligned_cols=92 Identities=13% Similarity=0.083 Sum_probs=64.1
Q ss_pred HHHHHHHHhcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhcccee
Q 017670 193 EERIRVAHEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCL 272 (368)
Q Consensus 193 Ee~lr~A~E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL 272 (368)
.+.+....+.++.|||.||.+.+|.+||+++|...+.. ..++++ ....+..+.|.|||.|.+.++|+.||..++ ..|
T Consensus 15 ~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i-~~v~i~-~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~-~~l 91 (109)
T 2rs2_A 15 VPRGSHMGSSGCKMFIGGLSWQTTQEGLREYFGQFGEV-KECLVM-RDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HEL 91 (109)
T ss_dssp -----------CCEEEESCCTTCCHHHHHHHHTTTSCE-EEEEEC-CCTTTCCCTTCEEEEESSHHHHHHHHHSSC-EEE
T ss_pred CccccccCCCCCEEEEeCCCCCCCHHHHHHHHHccCCe-EEEEEE-ECCCCCCcCcEEEEEECCHHHHHHHHHHCC-CcC
Confidence 44445556788999999999999999999999876543 333333 233345778999999999999999999875 434
Q ss_pred eecCCceeeeccCCCCCC
Q 017670 273 LLSNGRPLLGSIGTPCFT 290 (368)
Q Consensus 273 ~ls~GRPL~~S~g~~~~p 290 (368)
+||+|....+.+...
T Consensus 92 ---~g~~l~V~~a~~~~~ 106 (109)
T 2rs2_A 92 ---DSKTIDPKVAFPRRA 106 (109)
T ss_dssp ---TTEEEEEEECCCCCC
T ss_pred ---CCEEEEEEEccCCCC
Confidence 999999887766544
No 101
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.69 E-value=2.7e-08 Score=76.25 Aligned_cols=86 Identities=17% Similarity=0.106 Sum_probs=67.6
Q ss_pred hcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCcee
Q 017670 201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 280 (368)
Q Consensus 201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL 280 (368)
+..+.|||.||.+.+|.+||+++|...+.. ..++++. ......+.|.|||.|.+.++|+.||.. |...| +||+|
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v-~~v~i~~-~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~---~g~~l 87 (105)
T 2dh8_A 14 DEIGKLFVGGLDWSTTQETLRSYFSQYGEV-VDCVIMK-DKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTL---DGRNI 87 (105)
T ss_dssp SSSSEECCBSCCTTCCHHHHHHHHHTTSCE-EEEEEEE-CSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEE---TTEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCe-EEEEEee-CCCCCCcceEEEEEECCHHHHHHHHHh-CCCeE---CCEEE
Confidence 467899999999999999999999886543 3343332 233456779999999999999999999 77666 99999
Q ss_pred eeccCCCCCCCC
Q 017670 281 LGSIGTPCFTGK 292 (368)
Q Consensus 281 ~~S~g~~~~p~k 292 (368)
......+....+
T Consensus 88 ~V~~a~~~~~~~ 99 (105)
T 2dh8_A 88 DPKPCTPRGMQP 99 (105)
T ss_dssp BCCCSCCSSCCT
T ss_pred EEEEccCCCCCC
Confidence 988877655443
No 102
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=98.69 E-value=2.4e-08 Score=84.28 Aligned_cols=82 Identities=12% Similarity=0.028 Sum_probs=65.7
Q ss_pred hcccEEEEecCCCCCCchHHHHHHHHHhh-ccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCce
Q 017670 201 EHGTLVVLENLDPSYTSTVVEDLVWHAFK-ENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRP 279 (368)
Q Consensus 201 E~GtlV~LqNLDps~ts~dVedLi~~a~k-e~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRP 279 (368)
+.++.|||.||.+.+|.+||+++|...+. .-..++++. ...+...-|.|||.|.+.++|+.||..||+..| +||+
T Consensus 53 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~-d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~---~Gr~ 128 (156)
T 3n9u_C 53 NRRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAE-NRANGQSKGYAEVVVASENSVHKLLELLPGKVL---NGEK 128 (156)
T ss_dssp ---CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEE-CTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEE---TTEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEe-cCCCCccceEEEEEECCHHHHHHHHHHcCCCEE---CCeE
Confidence 46799999999999999999999987663 455555543 233456678999999999999999999999987 9999
Q ss_pred eeeccCC
Q 017670 280 LLGSIGT 286 (368)
Q Consensus 280 L~~S~g~ 286 (368)
|....+.
T Consensus 129 l~V~~a~ 135 (156)
T 3n9u_C 129 VDVRPAT 135 (156)
T ss_dssp CEEEECC
T ss_pred eEEEEcC
Confidence 9977654
No 103
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=98.68 E-value=6e-08 Score=79.05 Aligned_cols=78 Identities=19% Similarity=0.037 Sum_probs=65.3
Q ss_pred HhcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCce
Q 017670 200 HEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRP 279 (368)
Q Consensus 200 ~E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRP 279 (368)
...++.|||.||.+.+|.+||+++|...+. -..++++.. +.|.|||.|.+.++|..||..||+.-| +|||
T Consensus 70 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~-i~~v~i~~~------~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~ 139 (150)
T 2i2y_A 70 CPLDCKVYVGNLGNNGNKTELERAFGYYGP-LRSVWVARN------PPGFAFVEFEDPRDAADAVRELDGRTL---CGCR 139 (150)
T ss_dssp STTSCEEEEESCCSCCSCHHHHHHHHHHSC-EEEEEECSS------SCSEEEEEESSHHHHHHHHHHHSSSCS---SSSC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCC-EEEEEEeeC------CCcEEEEEECCHHHHHHHHHHcCCCEE---CCeE
Confidence 346799999999999999999999998664 344544432 579999999999999999999999877 9999
Q ss_pred eeeccCCC
Q 017670 280 LLGSIGTP 287 (368)
Q Consensus 280 L~~S~g~~ 287 (368)
|..+.+.+
T Consensus 140 l~v~~a~~ 147 (150)
T 2i2y_A 140 VRVELSNG 147 (150)
T ss_dssp CEEEECCC
T ss_pred EEEEEcCC
Confidence 99877654
No 104
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=98.68 E-value=2.3e-08 Score=80.91 Aligned_cols=89 Identities=11% Similarity=0.148 Sum_probs=68.4
Q ss_pred hcccEEEEecCCCCCCchHHHHHHHHHhhccce-ecccCCc--ccCCCCCceEEEEEechHHHHHHHHhhccceeeecCC
Q 017670 201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCS-AKMIPRV--AFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNG 277 (368)
Q Consensus 201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~-AkmI~~~--~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~G 277 (368)
..++.|||.||.+.+|.+||+++|...+..... .++|-.+ .....+.|.|||.|.+.++|..||..||+.-| +|
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~---~g 119 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVL---FG 119 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEE---TT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEe---CC
Confidence 457899999999999999999999886654321 1111111 13457789999999999999999999999987 99
Q ss_pred ceeeeccCCCCCCCC
Q 017670 278 RPLLGSIGTPCFTGK 292 (368)
Q Consensus 278 RPL~~S~g~~~~p~k 292 (368)
|+|....+.+.-|..
T Consensus 120 ~~l~V~~a~~~~~~~ 134 (143)
T 3egn_A 120 KPMVVQFARSARPKQ 134 (143)
T ss_dssp EECEEEECCCSCC--
T ss_pred cEEEEEECCCCCCcc
Confidence 999988886655543
No 105
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.68 E-value=1.2e-08 Score=75.34 Aligned_cols=79 Identities=22% Similarity=0.133 Sum_probs=63.6
Q ss_pred hcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCcee
Q 017670 201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 280 (368)
Q Consensus 201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL 280 (368)
..++.|||.||.+.+|.+||+++|...+. -..++++ ....+..+.|.|||.|.+.++|..||..||+.-| +||++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~-i~~~~i~-~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~~ 77 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGK-IVSTKAI-LDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGV---QAQMA 77 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSC-EEEEEEE-CCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTC---CEESC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCC-eEEEEEE-ecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeE---eeEEE
Confidence 46899999999999999999999986553 2333333 3334567889999999999999999999999877 89988
Q ss_pred eecc
Q 017670 281 LGSI 284 (368)
Q Consensus 281 ~~S~ 284 (368)
-.+.
T Consensus 78 ~~~~ 81 (85)
T 1x4e_A 78 KQSG 81 (85)
T ss_dssp CSSC
T ss_pred eecC
Confidence 6543
No 106
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.68 E-value=3.6e-08 Score=77.29 Aligned_cols=90 Identities=16% Similarity=0.157 Sum_probs=67.6
Q ss_pred ChHHHHHHH-HhcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhcc
Q 017670 191 PWEERIRVA-HEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEE 269 (368)
Q Consensus 191 PWEe~lr~A-~E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~ 269 (368)
|+..++... ...++.|||.||.+.+|.+||+++|...+.. ...+++... ..+.|.|||.|.+.++|+.|+..||+
T Consensus 16 ~~~~S~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i-~~v~i~~~~---~~~kg~afV~f~~~~~A~~Ai~~l~g 91 (109)
T 2err_A 16 PRGSHMNTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKI-LDVEIIFNE---RGSKGFGFVTFENSADADRAREKLHG 91 (109)
T ss_dssp ------CCSCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCC-SCEEECCBT---TBCTTEEEEECCCSHHHHHHHHHHTT
T ss_pred CCCCCCCccCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCE-EEEEEEECC---CCCceEEEEEECCHHHHHHHHHHcCC
Confidence 444444443 5678999999999999999999999876543 334443322 24679999999999999999999999
Q ss_pred ceeeecCCceeeeccCCC
Q 017670 270 GCLLLSNGRPLLGSIGTP 287 (368)
Q Consensus 270 ~cL~ls~GRPL~~S~g~~ 287 (368)
..| +||+|....+.+
T Consensus 92 ~~~---~g~~l~V~~a~~ 106 (109)
T 2err_A 92 TVV---EGRKIEVNNATA 106 (109)
T ss_dssp CEE---TTEECEEEECCC
T ss_pred CEE---CCEEEEEEECCC
Confidence 987 999999877654
No 107
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=98.67 E-value=4.5e-08 Score=75.98 Aligned_cols=76 Identities=17% Similarity=0.139 Sum_probs=63.6
Q ss_pred cccEEEEecCCCC-CCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCcee
Q 017670 202 HGTLVVLENLDPS-YTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 280 (368)
Q Consensus 202 ~GtlV~LqNLDps-~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL 280 (368)
.++.|||.||.+. +|.+||+++|...+. -..+++ +.|.|||.|.+.++|+.||..||...| +||+|
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~-v~~v~i---------~~g~afV~f~~~~~A~~A~~~l~g~~~---~g~~l 92 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGR-VAGCSV---------HKGYAFVQYSNERHARAAVLGENGRVL---AGQTL 92 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSC-CSEEEE---------ETTEEEEECSSSHHHHHHHHHHTTCEE---TTEEC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCC-eEEEEE---------eCCEEEEEECCHHHHHHHHHHcCCCEE---CCeEE
Confidence 4689999999999 999999999987554 223333 579999999999999999999999887 99999
Q ss_pred eeccCCCCCC
Q 017670 281 LGSIGTPCFT 290 (368)
Q Consensus 281 ~~S~g~~~~p 290 (368)
....+.+.-+
T Consensus 93 ~V~~a~~~~~ 102 (110)
T 1wf1_A 93 DINMAGEPKP 102 (110)
T ss_dssp CEEESCCCCS
T ss_pred EEEECCCCCC
Confidence 9888764443
No 108
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.67 E-value=2.2e-08 Score=75.64 Aligned_cols=81 Identities=15% Similarity=0.199 Sum_probs=64.0
Q ss_pred hcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCcee
Q 017670 201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 280 (368)
Q Consensus 201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL 280 (368)
...+.|||.||.+.+|.+||+++|...+... .++++ .......+.|.|||.|.+.++|+.||..||...| +||+|
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~-~~~~~-~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~---~g~~l 87 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIP-GSVCL-KYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPI---GSRKV 87 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCT-TTCEE-EECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEE---TTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCcc-ceEEE-EECCCCCeeeEEEEEECCHHHHHHHHHHhCCCee---CCeEE
Confidence 4568999999999999999999998765432 12222 1223345679999999999999999999999977 99999
Q ss_pred eeccCC
Q 017670 281 LGSIGT 286 (368)
Q Consensus 281 ~~S~g~ 286 (368)
....+.
T Consensus 88 ~V~~a~ 93 (98)
T 2cqp_A 88 KLVLGS 93 (98)
T ss_dssp EEEESS
T ss_pred EEEEcC
Confidence 877654
No 109
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.66 E-value=4.2e-08 Score=78.00 Aligned_cols=83 Identities=18% Similarity=0.061 Sum_probs=65.3
Q ss_pred hcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCcee
Q 017670 201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 280 (368)
Q Consensus 201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL 280 (368)
+.++.|||.||.+.+|.+||+++|..-+... .++|+. .-|.|||.|.+.++|..||..|+..-+.+ +||||
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~-~v~i~~-------~kg~aFVef~~~~~A~~Ai~~l~~~~~~~-~Gr~l 83 (101)
T 2cq1_A 13 APSRVLHIRKLPGEVTETEVIALGLPFGKVT-NILMLK-------GKNQAFLELATEEAAITMVNYYSAVTPHL-RNQPI 83 (101)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHTTTTTSCEE-EEEEET-------TTTEEEEEESSHHHHHHHHHHHHHSCCEE-TTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEE-EEEEEC-------CCCEEEEEECCHHHHHHHHHHhccCCceE-CCcEE
Confidence 3578999999999999999999998865543 445543 26999999999999999999986322222 89999
Q ss_pred eeccCCCCCCCC
Q 017670 281 LGSIGTPCFTGK 292 (368)
Q Consensus 281 ~~S~g~~~~p~k 292 (368)
....+....++.
T Consensus 84 ~V~~a~~~~~~~ 95 (101)
T 2cq1_A 84 YIQYSNHKELKT 95 (101)
T ss_dssp EEEECSCSSCCC
T ss_pred EEEEcCcccCcC
Confidence 998887665554
No 110
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=98.66 E-value=6e-08 Score=80.59 Aligned_cols=92 Identities=9% Similarity=-0.005 Sum_probs=72.9
Q ss_pred HHHHHhcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeec
Q 017670 196 IRVAHEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLS 275 (368)
Q Consensus 196 lr~A~E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls 275 (368)
+.......+.|||.||.+.+|.+||.++|...+ .-..++++.. ..+..+.|.|||-|.+.++|..||..||+..|
T Consensus 118 ~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G-~v~~v~i~~~-~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~--- 192 (216)
T 2qfj_A 118 LAEEARAFNRIYVASVHQDLSDDDIKSVFEAFG-KIKSATLARD-PTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDL--- 192 (216)
T ss_dssp HHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSS-CEEEEEEEEC-TTTCCEEEEEEEEESSHHHHHHHHHHHTTCBC---
T ss_pred hhcccCCCcEEEEeCCCCcCCHHHHHHHHhccC-CeeEEEEEec-CCCCCcCceEEEEecCHHHHHHHHHHccCCEe---
Confidence 334466789999999999999999999998754 3444544432 22456789999999999999999999999987
Q ss_pred CCceeeeccCCCCCCCC
Q 017670 276 NGRPLLGSIGTPCFTGK 292 (368)
Q Consensus 276 ~GRPL~~S~g~~~~p~k 292 (368)
+||+|..+.+.+..+..
T Consensus 193 ~g~~i~V~~a~~~~~~~ 209 (216)
T 2qfj_A 193 GGQYLRVGKAVTPPMPL 209 (216)
T ss_dssp SSSBCEEEECSSCSSTT
T ss_pred CCcEEEEEEecCCCCCC
Confidence 99999988887664433
No 111
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=98.66 E-value=2.2e-08 Score=75.06 Aligned_cols=79 Identities=15% Similarity=0.129 Sum_probs=61.5
Q ss_pred cccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCceee
Q 017670 202 HGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLL 281 (368)
Q Consensus 202 ~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL~ 281 (368)
..+.|||.||.+.+|.+||+++|...+... ..+++. ......+.|.|||.|.+.++|..||..||...| +||+|.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~-~~~~~~-~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~---~gr~l~ 88 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIP-GSVCLK-YNEKGMPTGEAMVAFESRDEATAAVIDLNDRPI---GSRKVK 88 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCT-TCCEEE-ECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEE---TTEECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCcc-ceEEEE-eCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeE---CCcEEE
Confidence 358999999999999999999998765432 122222 122345678999999999999999999999988 999998
Q ss_pred eccC
Q 017670 282 GSIG 285 (368)
Q Consensus 282 ~S~g 285 (368)
-...
T Consensus 89 v~~a 92 (95)
T 2ek1_A 89 LSGP 92 (95)
T ss_dssp EECC
T ss_pred EEec
Confidence 6543
No 112
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=98.66 E-value=2.5e-08 Score=83.10 Aligned_cols=87 Identities=8% Similarity=-0.022 Sum_probs=67.7
Q ss_pred hcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCcee
Q 017670 201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 280 (368)
Q Consensus 201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL 280 (368)
..++.|||.||.+.+|..+|.++|...+.. ..++++. ......+.|.|||.|.+.++|..||..||...| +|++|
T Consensus 70 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i-~~v~i~~-~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~---~g~~l 144 (165)
T 1rk8_A 70 VEGWILFVTSIHEEAQEDEIQEKFCDYGEI-KNIHLNL-DRRTGFSKGYALVEYETHKQALAAKEALNGAEI---MGQTI 144 (165)
T ss_dssp C-CEEEEEESCCTTCCHHHHHHHHGGGSCE-EEEEEEE-CTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEE---TTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhcCCCE-EEEEEEe-cCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEE---CCEEE
Confidence 457899999999999999999999887643 3443332 223345679999999999999999999999877 99999
Q ss_pred eeccCCCCCCCC
Q 017670 281 LGSIGTPCFTGK 292 (368)
Q Consensus 281 ~~S~g~~~~p~k 292 (368)
....+.+..|.+
T Consensus 145 ~V~~a~~~~~~~ 156 (165)
T 1rk8_A 145 QVDWCFVKGPKR 156 (165)
T ss_dssp EEEESEECC---
T ss_pred EEEEecCCCCCC
Confidence 988876655544
No 113
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.66 E-value=1.3e-08 Score=79.28 Aligned_cols=81 Identities=17% Similarity=0.150 Sum_probs=64.5
Q ss_pred HhcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCce
Q 017670 200 HEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRP 279 (368)
Q Consensus 200 ~E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRP 279 (368)
....+.|||.||.+.+|.+||+++|...+.. ..++++ .......+.|.|||.|.+.++|+.|| .||+..| +||+
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i-~~v~i~-~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~---~g~~ 95 (114)
T 2cq4_A 22 ERDARTVFCMQLAARIRPRDLEDFFSAVGKV-RDVRII-SDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRL---LGVP 95 (114)
T ss_dssp HHHHTEEEEESCCTTCCHHHHHHHHTTTSCE-EEEEEC-CSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEE---TTEE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhCCCE-eEEEEE-ecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEe---CCeE
Confidence 4567999999999999999999999875543 334333 22333567899999999999999999 9999877 9999
Q ss_pred eeeccCC
Q 017670 280 LLGSIGT 286 (368)
Q Consensus 280 L~~S~g~ 286 (368)
|......
T Consensus 96 l~V~~a~ 102 (114)
T 2cq4_A 96 IIVQASQ 102 (114)
T ss_dssp EEEEEHH
T ss_pred EEEEecC
Confidence 9866543
No 114
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=98.65 E-value=3.1e-08 Score=73.32 Aligned_cols=78 Identities=17% Similarity=0.154 Sum_probs=60.9
Q ss_pred HhcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCce
Q 017670 200 HEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRP 279 (368)
Q Consensus 200 ~E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRP 279 (368)
.+..+.|||.||.+.+|.+||+++|...+. -..++++ ....+..+.|.|||.|.+.++|+.||.. ++.-| +||+
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~-i~~v~i~-~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~---~g~~ 81 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGE-VVDCTIK-MDPNTGRSRGFGFILFKDAASVEKVLDQ-KEHRL---DGRV 81 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSC-EEEEEEE-ECTTTCCEEEEEEEEESSTHHHHHHHHS-SCEEE---TTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCC-EEEEEEe-ecCCCCccccEEEEEECCHHHHHHHHHh-CCCEE---CCEE
Confidence 457889999999999999999999977654 3344443 2233456788999999999999999954 66555 9999
Q ss_pred eeec
Q 017670 280 LLGS 283 (368)
Q Consensus 280 L~~S 283 (368)
|...
T Consensus 82 i~v~ 85 (87)
T 3s7r_A 82 IDPK 85 (87)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8754
No 115
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.65 E-value=9.8e-08 Score=72.58 Aligned_cols=81 Identities=16% Similarity=0.093 Sum_probs=65.9
Q ss_pred cccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCceee
Q 017670 202 HGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLL 281 (368)
Q Consensus 202 ~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL~ 281 (368)
.++.|||.|| .+|.+||+++|...+.. ..+++ .++.|.|||.|.+.++|+.||..||...| +||+|.
T Consensus 14 ~~~~l~V~n~--~~t~~~l~~~F~~~G~i-~~v~i-------~~~~g~afV~f~~~~~a~~Ai~~l~g~~~---~g~~l~ 80 (97)
T 1x5p_A 14 KGNTLYVYGE--DMTPTLLRGAFSPFGNI-IDLSM-------DPPRNCAFVTYEKMESADQAVAELNGTQV---ESVQLK 80 (97)
T ss_dssp CCSEEEEECS--SCCHHHHHHHHTTTSCE-EEEEE-------ETTTTEEEEEESSHHHHHHHHHHTTTEEE---TTEEEE
T ss_pred CCCEEEEcCC--CCCHHHHHHHHhhCCCE-EEEEe-------cCCCCEEEEEECCHHHHHHHHHHhCCCeE---CCeEEE
Confidence 5689999997 89999999999876643 33333 26779999999999999999999999977 999999
Q ss_pred eccCCCCCCCCCCc
Q 017670 282 GSIGTPCFTGKQSK 295 (368)
Q Consensus 282 ~S~g~~~~p~k~s~ 295 (368)
...+.+..+..+..
T Consensus 81 v~~a~~~~~~~~~~ 94 (97)
T 1x5p_A 81 VNIARKQPMLDSGP 94 (97)
T ss_dssp EECCSSCCCCCSSC
T ss_pred EEECCCCCCCCCCC
Confidence 98887765554443
No 116
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=98.65 E-value=6.6e-08 Score=77.10 Aligned_cols=108 Identities=13% Similarity=0.106 Sum_probs=79.1
Q ss_pred cccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCceee
Q 017670 202 HGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLL 281 (368)
Q Consensus 202 ~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL~ 281 (368)
.++.|||.||.+..|.+||.++|...+.. ...+++. ..-+..+.|.|||.|.+.++|..|+..|++..+ +||+|.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i-~~v~i~~-~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~---~g~~l~ 76 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPI-NTCRIMR-DYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITV---RNKRLK 76 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCE-EEEECCE-ETTTTEECSEEEEEESSHHHHHHHHHHHTTCEE---TTEECE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCe-eEEEEEE-eCCCCccceEEEEEECCHHHHHHHHHhcCCCEe---CCcEEE
Confidence 46899999999999999999999886643 2333332 222356679999999999999999999999877 999999
Q ss_pred eccCCCCCCCC--CCccccceehhhHHHHHHHHHHhhhc
Q 017670 282 GSIGTPCFTGK--QSKFVGHLALDKLKFQMQREMREAVS 318 (368)
Q Consensus 282 ~S~g~~~~p~k--~s~f~GHl~i~k~r~q~qrEmr~AVS 318 (368)
.....+..... ..-|.|.|.-+- ..+++++..+
T Consensus 77 v~~~~~~~~~~~~~~l~v~nl~~~~----t~~~l~~~f~ 111 (168)
T 1b7f_A 77 VSYARPGGESIKDTNLYVTNLPRTI----TDDQLDTIFG 111 (168)
T ss_dssp EEECCCCSSTTTTCEEEEESCCTTC----CHHHHHHHHT
T ss_pred EEecCCCcccCCCCCEEEeCCCCCC----CHHHHHHhhh
Confidence 88776654433 344666665432 2355665543
No 117
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.65 E-value=2.4e-08 Score=78.60 Aligned_cols=80 Identities=19% Similarity=0.138 Sum_probs=63.6
Q ss_pred hcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCcee
Q 017670 201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 280 (368)
Q Consensus 201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL 280 (368)
...+.|||.||.+.+|.+||+++|...+.....++|+.. . +..+.|.|||.|.+.++|+.||.. |...| +||+|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d-~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~---~gr~i 86 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVD-N-NGQGLGQALVQFKNEDDARKSERL-HRKKL---NGREA 86 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCC-T-TSSCSSCEEEECSSHHHHHHHGGG-CSEEE---TTEEE
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEEC-C-CCCcceEEEEEECCHHHHHHHHHh-CCCcc---CCeEE
Confidence 457899999999999999999999876433233444433 2 567899999999999999999998 77666 99999
Q ss_pred eeccCC
Q 017670 281 LGSIGT 286 (368)
Q Consensus 281 ~~S~g~ 286 (368)
......
T Consensus 87 ~v~~a~ 92 (114)
T 2cpy_A 87 FVHVVT 92 (114)
T ss_dssp EEEEEC
T ss_pred EEEECC
Confidence 866554
No 118
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.64 E-value=4e-08 Score=72.24 Aligned_cols=73 Identities=21% Similarity=0.198 Sum_probs=59.3
Q ss_pred hcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhh-ccceeeecCCce
Q 017670 201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKL-EEGCLLLSNGRP 279 (368)
Q Consensus 201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kl-n~~cL~ls~GRP 279 (368)
...+.|||.||.+.+|.+||+++|...+.. ...+++. +-|.|||.|.+.++|..|+..| |...+ +||+
T Consensus 10 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i-~~~~~~~-------~kg~afV~f~~~~~A~~a~~~l~~~~~~---~g~~ 78 (85)
T 2ytc_A 10 KTITTLYVGGLGDTITETDLRNHFYQFGEI-RTITVVQ-------RQQCAFIQFATRQAAEVAAEKSFNKLIV---NGRR 78 (85)
T ss_dssp SSCCCEEEECCTTTSCHHHHHHHHHTTSCE-EEEEEEG-------GGTEEEEEESSHHHHHHHHHTTTTTCEE---TTEE
T ss_pred CCccEEEEcCCCCCCCHHHHHHHHHhCCCE-eEEEEEC-------CCCEEEEEECCHHHHHHHHHHhcCCeeE---CCCE
Confidence 456889999999999999999999876543 3344443 3689999999999999999999 66555 8999
Q ss_pred eeecc
Q 017670 280 LLGSI 284 (368)
Q Consensus 280 L~~S~ 284 (368)
|....
T Consensus 79 l~v~~ 83 (85)
T 2ytc_A 79 LNVKW 83 (85)
T ss_dssp CCEEE
T ss_pred EEEEe
Confidence 87554
No 119
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.64 E-value=5.7e-08 Score=73.93 Aligned_cols=78 Identities=21% Similarity=0.206 Sum_probs=64.6
Q ss_pred hcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCcee
Q 017670 201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 280 (368)
Q Consensus 201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL 280 (368)
...+.|||.||.+.+|.+||+++|.+.+.. ...+++ ++-|.|||.|.+.++|+.||..||+..| +||+|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i-~~v~~~-------~~kg~afV~f~~~~~a~~a~~~l~g~~~---~g~~l 81 (99)
T 2cpj_A 13 TQRSRLFVGNLPPDITEEEMRKLFEKYGKA-GEVFIH-------KDKGFGFIRLETRTLAEIAKVELDNMPL---RGKQL 81 (99)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHHTSTTCCC-SEEEEE-------TTTTEEEEECSSSHHHHHHHHHHTTCCB---TTBCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhcCCe-EEEEEe-------cCCCEEEEEECCHHHHHHHHHHhCCCEe---CCceE
Confidence 456899999999999999999999886543 333333 2369999999999999999999999887 99999
Q ss_pred eeccCCCCC
Q 017670 281 LGSIGTPCF 289 (368)
Q Consensus 281 ~~S~g~~~~ 289 (368)
....+.+..
T Consensus 82 ~v~~a~~~~ 90 (99)
T 2cpj_A 82 RVRFACHSA 90 (99)
T ss_dssp EEEESSCCS
T ss_pred EEEEcCCCC
Confidence 988776543
No 120
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=98.64 E-value=5.2e-08 Score=77.11 Aligned_cols=107 Identities=19% Similarity=0.191 Sum_probs=78.5
Q ss_pred ccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCceeee
Q 017670 203 GTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLLG 282 (368)
Q Consensus 203 GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL~~ 282 (368)
.|.|||.||.+.+|.+||.++|...+.. ...+++. ...++.+.|.|||.|.+.++|..|+..||+..+ +||||..
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i-~~v~~~~-~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~---~g~~l~v 76 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEI-ESCKLVR-DKITGQSLGYGFVNYIDPKDAEKAINTLNGLRL---QTKTIKV 76 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCE-EEEEEEE-CTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEE---TTEECEE
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCe-EEEEEEe-CCCCCcceeEEEEEECCHHHHHHHHHHcCCCcc---CCceEEE
Confidence 5889999999999999999999986643 3344433 233456679999999999999999999999877 9999998
Q ss_pred ccCCCCCCC--CCCccccceehhhHHHHHHHHHHhhhc
Q 017670 283 SIGTPCFTG--KQSKFVGHLALDKLKFQMQREMREAVS 318 (368)
Q Consensus 283 S~g~~~~p~--k~s~f~GHl~i~k~r~q~qrEmr~AVS 318 (368)
....+..+. ...-|+|.|.-+- ..+++++..+
T Consensus 77 ~~~~~~~~~~~~~~l~v~nl~~~~----t~~~l~~~f~ 110 (167)
T 1fxl_A 77 SYARPSSASIRDANLYVSGLPKTM----TQKELEQLFS 110 (167)
T ss_dssp EECCCCCGGGTTCEEEEESCCTTC----CHHHHHHHHG
T ss_pred EecCCCcccCCCCcEEECCCCCcC----CHHHHHHHHH
Confidence 877655432 2445667665432 2345555444
No 121
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=98.64 E-value=5.5e-08 Score=76.70 Aligned_cols=78 Identities=13% Similarity=0.107 Sum_probs=64.9
Q ss_pred HHHhcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCC
Q 017670 198 VAHEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNG 277 (368)
Q Consensus 198 ~A~E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~G 277 (368)
.....++.|||.||.+.+|.+||+++|...+.. ..++++ .|.|||.|.+.++|..||..||+..+ +|
T Consensus 26 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i-~~v~i~---------kg~afV~f~~~~~A~~Ai~~l~g~~~---~g 92 (108)
T 2jvo_A 26 EGELSNTRLFVRPFPLDVQESELNEIFGPFGPM-KEVKIL---------NGFAFVEFEEAESAAKAIEEVHGKSF---AN 92 (108)
T ss_dssp --CCSCSEEEECSSCTTCCHHHHHHHHTTTSCC-CEEEEE---------TTEEEEECSSHHHHHHHHHHHTTCEE---TT
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCE-EEEEEE---------CCEEEEEECCHHHHHHHHHHcCCCEE---CC
Confidence 345678999999999999999999999886643 333343 69999999999999999999999987 99
Q ss_pred ceeeeccCCCC
Q 017670 278 RPLLGSIGTPC 288 (368)
Q Consensus 278 RPL~~S~g~~~ 288 (368)
|+|....+.+.
T Consensus 93 ~~l~V~~a~~~ 103 (108)
T 2jvo_A 93 QPLEVVYSKLP 103 (108)
T ss_dssp EECEEESCSCC
T ss_pred eEEEEEEecCC
Confidence 99998777654
No 122
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=98.64 E-value=2.7e-08 Score=74.71 Aligned_cols=72 Identities=15% Similarity=0.158 Sum_probs=60.4
Q ss_pred cccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCceee
Q 017670 202 HGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLL 281 (368)
Q Consensus 202 ~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL~ 281 (368)
.++.|||.||.+.+|.+||+++|.+. .-..+++. .+-|.|||.|.+.++|+.||..||...+ +||+|.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~--~v~~~~i~-------~~~g~afV~f~~~~~a~~Ai~~l~g~~~---~g~~l~ 71 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY--DLKYCYVD-------RNKRTAFVTLLNGEQAQNAIQMFHQYSF---RGKDLI 71 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS--CCCCEEEE-------GGGTEEEECCSCHHHHHHHHHHHTTEEE---TTEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC--CeEEEEEe-------CCCcEEEEEECCHHHHHHHHHHhCCCeE---CCcEEE
Confidence 46789999999999999999998765 33333331 6679999999999999999999999887 999998
Q ss_pred eccC
Q 017670 282 GSIG 285 (368)
Q Consensus 282 ~S~g 285 (368)
...+
T Consensus 72 V~~a 75 (88)
T 1wg1_A 72 VQLQ 75 (88)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 7654
No 123
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.63 E-value=5.9e-08 Score=77.31 Aligned_cols=81 Identities=16% Similarity=0.084 Sum_probs=64.6
Q ss_pred cccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCceee
Q 017670 202 HGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLL 281 (368)
Q Consensus 202 ~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL~ 281 (368)
-.+.|||.||.+.+|.+||+++|..-+... .++|++ .-|.|||.|.+.++|..||..|+..-+.+ +||||.
T Consensus 14 p~~~l~V~nLp~~~te~~L~~~F~~fG~V~-~v~i~~-------~kg~aFVef~~~~~A~~Ai~~l~~~~~~i-~Gr~l~ 84 (104)
T 1wex_A 14 VSPVVHVRGLCESVVEADLVEALEKFGTIC-YVMMMP-------FKRQALVEFENIDSAKECVTFAADVPVYI-AGQQAF 84 (104)
T ss_dssp CCSEEEEESCCSSCCHHHHHHHHTTTSCEE-EEEEET-------TTTEEEEEESSHHHHHHHHHHHHHSCCBS-SSSBCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEE-EEEEEC-------CCCEEEEEECCHHHHHHHHHHhccCCceE-CCEEEE
Confidence 368999999999999999999998866543 455554 25899999999999999999997643323 999999
Q ss_pred eccCCCCCCC
Q 017670 282 GSIGTPCFTG 291 (368)
Q Consensus 282 ~S~g~~~~p~ 291 (368)
...+......
T Consensus 85 V~~a~~~~~~ 94 (104)
T 1wex_A 85 FNYSTSKRIT 94 (104)
T ss_dssp EEECSSSSCC
T ss_pred EEEccCcccc
Confidence 8887655443
No 124
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=98.63 E-value=4.5e-08 Score=77.44 Aligned_cols=81 Identities=16% Similarity=0.164 Sum_probs=64.8
Q ss_pred hcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCcee
Q 017670 201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 280 (368)
Q Consensus 201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL 280 (368)
..++.|+|.||.+.+|.+||.++|...+.. ..++++. ......+.|.|||-|.+.++|..|+..||+..+ +||+|
T Consensus 85 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i-~~~~i~~-~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~---~g~~i 159 (166)
T 3md3_A 85 DDTFNLFVGDLNVNVDDETLRNAFKDFPSY-LSGHVMW-DMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDL---NGRPL 159 (166)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHTTSTTE-EEEEEEE-CTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEE---TTEEC
T ss_pred CCCceEEECCCCCCCCHHHHHHHHhccCCe-eEEEEEe-cCCCCCcceEEEEEeCCHHHHHHHHHHhCCCcc---CCcEE
Confidence 357789999999999999999999775543 3343332 223356788999999999999999999999987 99999
Q ss_pred eeccCC
Q 017670 281 LGSIGT 286 (368)
Q Consensus 281 ~~S~g~ 286 (368)
..+.+.
T Consensus 160 ~v~~a~ 165 (166)
T 3md3_A 160 RINWAA 165 (166)
T ss_dssp EEEESC
T ss_pred EEEecC
Confidence 877653
No 125
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.62 E-value=9e-08 Score=72.56 Aligned_cols=78 Identities=10% Similarity=0.034 Sum_probs=63.4
Q ss_pred cccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecC--Cce
Q 017670 202 HGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSN--GRP 279 (368)
Q Consensus 202 ~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~--GRP 279 (368)
..+.|||.||.+.+|.+||+++|...+... .++++. .-|.|||.|.+.++|+.||..||...| + ||+
T Consensus 16 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~-~v~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~---~~~g~~ 84 (97)
T 1why_A 16 PTTRLWVGGLGPNTSLAALAREFDRFGSIR-TIDHVK-------GDSFAYIQYESLDAAQAACAKMRGFPL---GGPDRR 84 (97)
T ss_dssp CCSCEEEECCCSSCCHHHHHHHHHTTSCEE-EEEECS-------SSCCEEEEESSHHHHHHHHHHHTTCBC---SSSSCB
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCee-EEEEeC-------CCCEEEEEECCHHHHHHHHHHHCCCEe---CCCCcE
Confidence 357899999999999999999998866432 233332 268999999999999999999999876 7 999
Q ss_pred eeeccCCCCCC
Q 017670 280 LLGSIGTPCFT 290 (368)
Q Consensus 280 L~~S~g~~~~p 290 (368)
|....+.+..+
T Consensus 85 l~V~~a~~~~~ 95 (97)
T 1why_A 85 LRVDFAKSGPS 95 (97)
T ss_dssp CEEEECCCCCC
T ss_pred EEEEECCCCCC
Confidence 99887766443
No 126
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.62 E-value=4.5e-08 Score=75.91 Aligned_cols=80 Identities=16% Similarity=0.128 Sum_probs=63.1
Q ss_pred hcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCcee
Q 017670 201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 280 (368)
Q Consensus 201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL 280 (368)
..++.|||.||.+..|.+||+++|...+......+|+ .. .+..+.|.|||.|.+.++|+.||.. |...| +||+|
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~-~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~---~gr~i 86 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLP-VD-FQGRSTGEAFVQFASQEIAEKALKK-HKERI---GHRYI 86 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECC-BC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCS---SSSCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEE-EC-CCCCcceEEEEEECCHHHHHHHHHh-Ccchh---CCcEE
Confidence 4578999999999999999999998866543223333 22 4568889999999999999999998 77666 99998
Q ss_pred eeccCC
Q 017670 281 LGSIGT 286 (368)
Q Consensus 281 ~~S~g~ 286 (368)
.-....
T Consensus 87 ~v~~~~ 92 (104)
T 1wg5_A 87 EIFKSS 92 (104)
T ss_dssp EEEEEC
T ss_pred EEEECC
Confidence 754443
No 127
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=98.62 E-value=4.5e-08 Score=78.76 Aligned_cols=83 Identities=14% Similarity=0.169 Sum_probs=67.0
Q ss_pred hcccEEEEecCCCCCCchHHHHHHHHHhhccc-eecccCCcccCCCCCceEEEEEechHHHHHHHHhhccc----eeeec
Q 017670 201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENC-SAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEG----CLLLS 275 (368)
Q Consensus 201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c-~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~----cL~ls 275 (368)
+.++.|||.||.+.+|.+||+++|...+.... .++++ .......+-|.|||.|.+. +|..||..||+. .|
T Consensus 21 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~-~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~--- 95 (131)
T 2m2b_A 21 NANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVI-KDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTI--- 95 (131)
T ss_dssp CCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECC-BCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCG---
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEE-EcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccC---
Confidence 45688999999999999999999987765543 14333 3444567789999999999 999999999998 66
Q ss_pred CCceeeeccCCCC
Q 017670 276 NGRPLLGSIGTPC 288 (368)
Q Consensus 276 ~GRPL~~S~g~~~ 288 (368)
+||+|....+.+.
T Consensus 96 ~gr~l~V~~a~~~ 108 (131)
T 2m2b_A 96 DGKTINVEFAKGS 108 (131)
T ss_dssp GGCCCCCEECCCS
T ss_pred CCEEEEEEECCCC
Confidence 9999997776554
No 128
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.62 E-value=5.6e-08 Score=80.48 Aligned_cols=84 Identities=18% Similarity=0.120 Sum_probs=67.0
Q ss_pred hcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCcee
Q 017670 201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 280 (368)
Q Consensus 201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL 280 (368)
+.++.|||.||.+.+|.+||+++|..-+. -..++|+.. -|.|||-|.+.++|..||..|+..-+.+ +||||
T Consensus 29 ~ps~~LfVgNLp~~vte~dL~~lF~~fG~-V~~v~i~~~-------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l-~Gr~l 99 (119)
T 2ad9_A 29 VPSRVIHIRKLPIDVTEGEVISLGLPFGK-VTNLLMLKG-------KNQAFIEMNTEEAANTMVNYYTSVTPVL-RGQPI 99 (119)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHHHTTTSC-CCEEEEEGG-------GTEEEEECSCHHHHHHHHHHHHHHCCCB-TTBCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCC-EEEEEEeCC-------CCEEEEEECCHHHHHHHHHHhccCCceE-CCeEE
Confidence 45789999999999999999999987554 445555532 4999999999999999999998531112 89999
Q ss_pred eeccCCCCCCCCC
Q 017670 281 LGSIGTPCFTGKQ 293 (368)
Q Consensus 281 ~~S~g~~~~p~k~ 293 (368)
....+.+..++..
T Consensus 100 ~V~~a~~k~~~~~ 112 (119)
T 2ad9_A 100 YIQFSNHKELKTD 112 (119)
T ss_dssp EEEECSSSSCCCC
T ss_pred EEEEccCCCCCcc
Confidence 9998877766653
No 129
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=98.62 E-value=4.9e-08 Score=79.11 Aligned_cols=76 Identities=14% Similarity=0.196 Sum_probs=64.5
Q ss_pred cccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCceee
Q 017670 202 HGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLL 281 (368)
Q Consensus 202 ~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL~ 281 (368)
.++.|||.||.+..|.+||.++|...+ ..+.+ ..+..+.|.|||-|.+.++|..||..||+..| +||+|.
T Consensus 98 ~~~~l~v~nlp~~~t~~~l~~~F~~~g----~v~~~---~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~---~g~~i~ 167 (175)
T 1fje_B 98 AARTLLAKNLSFNITEDELKEVFEDAL----EIRLV---SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEI---DGRSVS 167 (175)
T ss_dssp GGGEEEEESCCSSCCHHHHHHHCTTCS----EEEEE---CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEE---TTEEEE
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhcC----eEEEe---cCCCCCceEEEEEECCHHHHHHHHHHhCCCEE---CCeEEE
Confidence 578999999999999999999988743 33333 44457889999999999999999999999877 999999
Q ss_pred eccCCC
Q 017670 282 GSIGTP 287 (368)
Q Consensus 282 ~S~g~~ 287 (368)
.+.+.+
T Consensus 168 v~~a~~ 173 (175)
T 1fje_B 168 LYYTGE 173 (175)
T ss_dssp EEECSS
T ss_pred EEecCC
Confidence 887654
No 130
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=98.61 E-value=6.8e-08 Score=75.03 Aligned_cols=78 Identities=13% Similarity=0.037 Sum_probs=63.1
Q ss_pred cccEEEEecCCCCC------CchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeec
Q 017670 202 HGTLVVLENLDPSY------TSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLS 275 (368)
Q Consensus 202 ~GtlV~LqNLDps~------ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls 275 (368)
.++.|||.||.+.. |.++|+++|...+.. ..++|+ + -+..+-|.|||.|.+.++|..||..||+..|
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v-~~v~i~-~--~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~--- 86 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKI-TNDFYP-E--EDGKTKGYIFLEYASPAHAVDAVKNADGYKL--- 86 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCE-EEEECC-C--BTTBSCCEEEEEECSSSHHHHHHHHCSSEEC---
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCE-EEEEee-C--CCCCeeeEEEEEECCHHHHHHHHHHhCCccc---
Confidence 36899999999988 668899999875543 334444 2 3457789999999999999999999999888
Q ss_pred CCc-eeeeccCC
Q 017670 276 NGR-PLLGSIGT 286 (368)
Q Consensus 276 ~GR-PL~~S~g~ 286 (368)
+|| +|....+.
T Consensus 87 ~g~~~l~V~~a~ 98 (105)
T 2nlw_A 87 DKQHTFRVNLFT 98 (105)
T ss_dssp STTCEEEEECSC
T ss_pred CCCceEEEEEcc
Confidence 999 99877664
No 131
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=98.61 E-value=1.2e-07 Score=78.30 Aligned_cols=78 Identities=18% Similarity=0.324 Sum_probs=61.0
Q ss_pred hcccEEEEecCCCCCCchHHHH----HHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecC
Q 017670 201 EHGTLVVLENLDPSYTSTVVED----LVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSN 276 (368)
Q Consensus 201 E~GtlV~LqNLDps~ts~dVed----Li~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~ 276 (368)
+.++.|||.||++.++.+|+++ +|...+.. ....+ . .+...-|.|||.|.+.++|+.||..||+..| +
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I-~~v~i-~---~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l---~ 98 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDI-LDIVV-D---LSDDNSGKAYIVFATQESAQAFVEAFQGYPF---Q 98 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCE-EEEEE-C---CCCSSCCCEEEEESSHHHHHHHHHHSTTCCC---T
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCe-EEEEe-c---cCCCcCCEEEEEECCHHHHHHHHHHHCCCEe---C
Confidence 4478999999999999999885 45444433 22322 1 2356789999999999999999999999987 9
Q ss_pred CceeeeccCC
Q 017670 277 GRPLLGSIGT 286 (368)
Q Consensus 277 GRPL~~S~g~ 286 (368)
||||....+.
T Consensus 99 gr~l~V~~a~ 108 (127)
T 2a3j_A 99 GNPLVITFSE 108 (127)
T ss_dssp TSCCEEEECC
T ss_pred CCEEEEEEcc
Confidence 9999877654
No 132
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=98.60 E-value=2.2e-08 Score=77.40 Aligned_cols=80 Identities=14% Similarity=0.058 Sum_probs=65.0
Q ss_pred cccEEEEecCCC------CCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeec
Q 017670 202 HGTLVVLENLDP------SYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLS 275 (368)
Q Consensus 202 ~GtlV~LqNLDp------s~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls 275 (368)
.++.|||.||.+ ..+.++|+++|...+.. ..+++ +.......+-|.|||.|.+.++|..||..||...|
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i-~~v~i-~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~--- 79 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKV-VNMEF-PIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRL--- 79 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCE-EEEEC-CEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBS---
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCE-eEEEE-EEcCCCCccceEEEEEECCHHHHHHHHHHhCCccc---
Confidence 478999999999 99999999999876643 34433 33444456789999999999999999999999987
Q ss_pred CC-ceeeeccCC
Q 017670 276 NG-RPLLGSIGT 286 (368)
Q Consensus 276 ~G-RPL~~S~g~ 286 (368)
+| |+|..+.+.
T Consensus 80 ~g~r~l~V~~a~ 91 (100)
T 3ns6_A 80 DLKHRLFLYTMK 91 (100)
T ss_dssp SSSCBCEEEESH
T ss_pred CCCeEEEEEECc
Confidence 88 999877654
No 133
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.60 E-value=1e-07 Score=74.43 Aligned_cols=85 Identities=13% Similarity=0.072 Sum_probs=66.3
Q ss_pred hcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCcee
Q 017670 201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 280 (368)
Q Consensus 201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL 280 (368)
+..+.|||.||.+.+|.+||+++|...+.. ..++++ .......+.|.|||.|.+.++|..||.. |...| +||+|
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i-~~v~i~-~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~---~g~~l 98 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYEQWGKL-TDCVVM-RDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSI---DGRVV 98 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHTSSCCC-SEEEEE-CCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEE---TTEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCE-EEEEEE-ECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEE---CCEEE
Confidence 456899999999999999999999765443 334333 2233356789999999999999999998 66655 99999
Q ss_pred eeccCCCCCCC
Q 017670 281 LGSIGTPCFTG 291 (368)
Q Consensus 281 ~~S~g~~~~p~ 291 (368)
....+.+....
T Consensus 99 ~V~~a~~~~~~ 109 (116)
T 1x4b_A 99 EPKRAVAREES 109 (116)
T ss_dssp EEECCSSCCCC
T ss_pred EEEECCCCccC
Confidence 98887665443
No 134
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=98.60 E-value=1.7e-07 Score=75.23 Aligned_cols=109 Identities=11% Similarity=0.101 Sum_probs=76.2
Q ss_pred hcccEEEEecCCCCCCchHHHHHHHHHhhcc-cee---cccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecC
Q 017670 201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKEN-CSA---KMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSN 276 (368)
Q Consensus 201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke~-c~A---kmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~ 276 (368)
+..+.|||.||.+.+|.+||+++|...+... |.. ..|.... ..++.|.|||.|.+.++|..|| .||+..+ +
T Consensus 2 r~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~-~~~~~g~afV~f~~~~~A~~A~-~~~~~~~---~ 76 (172)
T 2g4b_A 2 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQ-INQDKNFAFLEFRSVDETTQAM-AFDGIIF---Q 76 (172)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEE-EETTTTEEEEEESSHHHHHHHG-GGTTCEE---T
T ss_pred CcccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeE-ecCCCCEEEEEeCCHHHHHHHH-HhCCcEe---c
Confidence 5678999999999999999999999986331 110 0111111 1355899999999999999999 8998877 9
Q ss_pred CceeeeccCCCCCCCC--CCccccceehhhHHHHHHHHHHhhhc
Q 017670 277 GRPLLGSIGTPCFTGK--QSKFVGHLALDKLKFQMQREMREAVS 318 (368)
Q Consensus 277 GRPL~~S~g~~~~p~k--~s~f~GHl~i~k~r~q~qrEmr~AVS 318 (368)
||+|.........+.. ..-|.|.|.-+- ..+++++..+
T Consensus 77 g~~i~v~~~~~~~~~~~~~~l~v~nlp~~~----t~~~l~~~f~ 116 (172)
T 2g4b_A 77 GQSLKIRRPHDYQPLPGAHKLFIGGLPNYL----NDDQVKELLT 116 (172)
T ss_dssp TEECEEECCSSCCCCTTTTCEEEECCCTTC----CHHHHHHHHH
T ss_pred CceeeecCCcccCCCCCCCEEEEEcCCCcC----CHHHHHHHHH
Confidence 9999987765543332 445677665543 2345555443
No 135
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=98.59 E-value=1e-07 Score=68.52 Aligned_cols=72 Identities=14% Similarity=0.098 Sum_probs=57.4
Q ss_pred EEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCceeeec
Q 017670 206 VVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLLGS 283 (368)
Q Consensus 206 V~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL~~S 283 (368)
|||.||.+..|.+||+++|...+.. ...+ |+...-+..+.|.|||.|.+.++|+.||.. ++..+ +||+|...
T Consensus 2 l~v~nLp~~~t~~~l~~~F~~~G~i-~~v~-i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~---~g~~l~v~ 73 (75)
T 1iqt_A 2 IFVGGLSPDTPEEKIREYFGGFGEV-ESIE-LPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNV---GLSKCEIK 73 (75)
T ss_dssp EEESCCCSSCCHHHHHHHHHHHSCC-SEEC-CCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCB---TTBCCCEE
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCe-EEEE-EEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeE---CCEEEEEE
Confidence 7999999999999999999987653 2333 333344467889999999999999999996 66555 99998654
No 136
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.58 E-value=1.8e-08 Score=80.15 Aligned_cols=80 Identities=18% Similarity=0.093 Sum_probs=62.2
Q ss_pred HhcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCce
Q 017670 200 HEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRP 279 (368)
Q Consensus 200 ~E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRP 279 (368)
.+.++.|||.||.+.+|.+||+++|...+... .+.+|.. ..+..+.|.|||.|.+.++|+.||. ||...| +||+
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~-~~~~~~~-~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~---~gr~ 95 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVE-DSIYIAY-GPNGKATGEGFVEFRNEADYKAALC-RHKQYM---GNRF 95 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCT-TTCEEEE-CTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCS---TTSC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCcc-ceEEEEE-CCCCCCCeEEEEEECCHHHHHHHHH-hCCCeE---CCcE
Confidence 35679999999999999999999997755432 2222221 2245678999999999999999999 998877 9999
Q ss_pred eeeccC
Q 017670 280 LLGSIG 285 (368)
Q Consensus 280 L~~S~g 285 (368)
|.....
T Consensus 96 i~V~~a 101 (124)
T 1wel_A 96 IQVHPI 101 (124)
T ss_dssp BEEEEE
T ss_pred EEEEEC
Confidence 985544
No 137
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=98.57 E-value=1.4e-07 Score=72.73 Aligned_cols=78 Identities=8% Similarity=0.040 Sum_probs=62.3
Q ss_pred HHHHHhcccEEEEecCCC-CCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeee
Q 017670 196 IRVAHEHGTLVVLENLDP-SYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLL 274 (368)
Q Consensus 196 lr~A~E~GtlV~LqNLDp-s~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~l 274 (368)
.......++.|||.||.+ .+|.+||+++|...+.. ..+++ ..|.|||.|.+.++|..||..||+..|
T Consensus 15 ~~~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v-~~v~i---------~~g~afV~f~~~~~A~~Ai~~l~g~~~-- 82 (97)
T 2xnq_A 15 VPRGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHI-MQINI---------KNAFGFIQFDNPQSVRDAIEXESQEMN-- 82 (97)
T ss_dssp ----CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCE-EEEEE---------CSSEEEEEESSHHHHHHHHHHHTTSEE--
T ss_pred ccCCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCE-EEEEE---------eCCEEEEEECCHHHHHHHHHHcCCCEE--
Confidence 344466789999999999 99999999999886543 23333 269999999999999999999999977
Q ss_pred cCCceeeeccCC
Q 017670 275 SNGRPLLGSIGT 286 (368)
Q Consensus 275 s~GRPL~~S~g~ 286 (368)
+||+|....+.
T Consensus 83 -~g~~l~V~~a~ 93 (97)
T 2xnq_A 83 -FGKKLILEVSS 93 (97)
T ss_dssp -TTEECEEEECC
T ss_pred -CCEEEEEEecC
Confidence 89999876543
No 138
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=98.57 E-value=1.4e-07 Score=74.67 Aligned_cols=104 Identities=14% Similarity=0.180 Sum_probs=75.7
Q ss_pred cEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCceeeec
Q 017670 204 TLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLLGS 283 (368)
Q Consensus 204 tlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL~~S 283 (368)
+.|||.||.+..|.+||+++|...+. -...+++... +..+.|.|||-|.+.++|..|+..||+..+ +||+|...
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~-i~~v~i~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~~~~~---~g~~i~v~ 74 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGP-IANIKIMIDK--NNKNVNYAFVEYHQSHDANIALQTLNGKQI---ENNIVKIN 74 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSC-EEEEEEECCC--C-CCEEEEEEEESSHHHHHHHHHHHTTCEE---TTEECEEE
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCC-eEEEEEEECC--CCCCCCEEEEEeCCHHHHHHHHHHcCCCcc---CCCeeEEE
Confidence 57999999999999999999987664 3344444332 246789999999999999999999999988 99999887
Q ss_pred cCCCCCCCC----CCccccceehhhHHHHHHHHHHhhh
Q 017670 284 IGTPCFTGK----QSKFVGHLALDKLKFQMQREMREAV 317 (368)
Q Consensus 284 ~g~~~~p~k----~s~f~GHl~i~k~r~q~qrEmr~AV 317 (368)
...+..+.. ..-|.|.|.-+- ..+++++..
T Consensus 75 ~~~~~~~~~~~~~~~l~v~nl~~~~----t~~~l~~~f 108 (166)
T 3md3_A 75 WAFQSQQSSSDDTFNLFVGDLNVNV----DDETLRNAF 108 (166)
T ss_dssp ECCCCCCCCCTTCEEEEEESCCTTC----CHHHHHHHH
T ss_pred EcCCCCCCCCCCCceEEECCCCCCC----CHHHHHHHH
Confidence 765543322 234556554332 235555554
No 139
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=98.57 E-value=6.1e-08 Score=75.52 Aligned_cols=78 Identities=9% Similarity=-0.023 Sum_probs=60.7
Q ss_pred hcccEEEEecCCCCCCchHHHHHHHHHhhc--cceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCc
Q 017670 201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKE--NCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGR 278 (368)
Q Consensus 201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke--~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GR 278 (368)
..++.|||.||.+..|.+||+++|...+.. --.++++ ...- ..+.|.|||.|.+.++|..||. +|...| +||
T Consensus 9 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~-~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~---~gr 82 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFL-LNRD-GKRRGDALIEMESEQDVQKALE-KHRMYM---GQR 82 (107)
T ss_dssp SSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECC-CCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCS---SSS
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEE-ECCC-CCEeeEEEEEECCHHHHHHHHH-hCccee---CCe
Confidence 568899999999999999999999875431 1122232 2222 6788999999999999999999 888766 999
Q ss_pred eeeecc
Q 017670 279 PLLGSI 284 (368)
Q Consensus 279 PL~~S~ 284 (368)
+|.-..
T Consensus 83 ~i~V~~ 88 (107)
T 2lmi_A 83 YVEVYE 88 (107)
T ss_dssp CCCCEE
T ss_pred EEEEEE
Confidence 987443
No 140
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=98.56 E-value=1.6e-07 Score=78.04 Aligned_cols=85 Identities=15% Similarity=0.052 Sum_probs=66.9
Q ss_pred HHHhcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCC
Q 017670 198 VAHEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNG 277 (368)
Q Consensus 198 ~A~E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~G 277 (368)
.+.+..+.|||.||.+.+|.+||.++|...+.. ..++++ +...+..+.|.|||.|.+.++|..||..||+..| +|
T Consensus 23 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i-~~v~i~-~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~---~g 97 (216)
T 2qfj_A 23 GALAIMSRVYVGSIYYELGEDTIRQAFAPFGPI-KSIDMS-WDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVML---GG 97 (216)
T ss_dssp HHHHHHTEEEEECCCTTCCHHHHHHHHGGGSCE-EEEEEC-CC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCC---C-
T ss_pred cccCcCCEEEEECCCCCCCHHHHHHHHHhCCCE-EEEEEe-ecCCCCccCceEEEEeCCHHHHHHHHHHccCCee---CC
Confidence 457788999999999999999999999876643 334433 2333467889999999999999999999999877 99
Q ss_pred ceeeeccCCC
Q 017670 278 RPLLGSIGTP 287 (368)
Q Consensus 278 RPL~~S~g~~ 287 (368)
|+|.......
T Consensus 98 ~~l~v~~~~~ 107 (216)
T 2qfj_A 98 RNIKVGRPSN 107 (216)
T ss_dssp CCCEEECCSC
T ss_pred eeEEEecCCC
Confidence 9998765543
No 141
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=98.55 E-value=1.3e-07 Score=74.84 Aligned_cols=68 Identities=24% Similarity=0.254 Sum_probs=56.0
Q ss_pred hcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCcee
Q 017670 201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 280 (368)
Q Consensus 201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL 280 (368)
..++.|||.||.+.+|.+||+++|...+ +-..++++.. |.|||.|.+.++|+.||..||..-| +||++
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G-~v~~~~i~~~--------g~afV~f~~~~~a~~Ai~~l~g~~~---~gr~~ 81 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAG-DVCYADVYRD--------GTGVVEFVRKEDMTYAVRKLDNTKF---RSHEG 81 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGS-CEEEEEECTT--------SEEEEEESSHHHHHHHHHHHTTCBC---CCTTS
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecC--------CEEEEEECCHHHHHHHHHHhCCCEE---CCcEe
Confidence 3578999999999999999999998765 3444544332 9999999999999999999999988 99984
No 142
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.53 E-value=9.7e-08 Score=76.81 Aligned_cols=77 Identities=13% Similarity=0.043 Sum_probs=61.0
Q ss_pred hcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCcee
Q 017670 201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 280 (368)
Q Consensus 201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL 280 (368)
..++.|||.||.+..|.+||+++|... . -..++++-. . ..++.|.|||.|.+.++|+.|| .+|...| +||+|
T Consensus 14 ~~~~~v~V~nLp~~~te~dl~~~F~~~-~-v~~v~i~~d-~-~g~~~G~afV~F~~~~~a~~Al-~~~~~~~---~gr~i 85 (109)
T 2dnn_A 14 PDDLYVSVHGMPFSAMENDVRDFFHGL-R-VDAVHLLKD-H-VGRNNGNGLVKFLSPQDTFEAL-KRNRMLM---IQRYV 85 (109)
T ss_dssp HHHHEEEEECCCSSCCHHHHHHHTTTS-C-CCEEEECCC-T-TCCCCSEEEEECSSHHHHHHHH-HTTTEEE---TTEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhccC-C-eeEEEEEEC-C-CCCCCeEEEEEECCHHHHHHHH-hcCCCeE---CCeEE
Confidence 346799999999999999999999875 3 234444322 2 2678899999999999999999 7888777 99998
Q ss_pred eeccC
Q 017670 281 LGSIG 285 (368)
Q Consensus 281 ~~S~g 285 (368)
.-...
T Consensus 86 ~V~~a 90 (109)
T 2dnn_A 86 EVSPA 90 (109)
T ss_dssp EEEEC
T ss_pred EEEEC
Confidence 75443
No 143
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=98.53 E-value=2.3e-07 Score=74.12 Aligned_cols=82 Identities=11% Similarity=0.098 Sum_probs=65.1
Q ss_pred hcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCcee
Q 017670 201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 280 (368)
Q Consensus 201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL 280 (368)
...+.|||.||.+.+|.+||.++|...+ .-..++++.. ..+..+.|.|||-|.+.++|..|+. ++...+ +||+|
T Consensus 85 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-~i~~~~i~~~-~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~---~g~~i 158 (167)
T 2cjk_A 85 DKTGKIFVGGIGPDVRPKEFEEFFSQWG-TIIDAQLMLD-KDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDF---KDRKI 158 (167)
T ss_dssp HHCEEEEEEEECTTCCHHHHHHHHHTTS-CCSEEECCCS-SSSSTTSEEEEEEESSHHHHHHHHH-CSEECS---SSSCE
T ss_pred cCCCeEEECCCCCCCCHHHHHHHHHhCc-cEEEEEEEEc-CCCCccceEEEEEECCHHHHHHHHh-CCCEEe---CCeEE
Confidence 4577899999999999999999998754 3444544332 3346788999999999999999998 766555 99999
Q ss_pred eeccCCCC
Q 017670 281 LGSIGTPC 288 (368)
Q Consensus 281 ~~S~g~~~ 288 (368)
....+.|.
T Consensus 159 ~V~~a~pk 166 (167)
T 2cjk_A 159 EIKRAEPR 166 (167)
T ss_dssp EEEECCCC
T ss_pred EEeecCCC
Confidence 98877654
No 144
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.53 E-value=1.4e-07 Score=74.54 Aligned_cols=76 Identities=16% Similarity=0.135 Sum_probs=61.1
Q ss_pred hcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCcee
Q 017670 201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 280 (368)
Q Consensus 201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL 280 (368)
..++.|||.||.+..|.+||+++|...+.. ..++|+... - ..+-|.|||.|.+.++|..||. +|..-| +||+|
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v-~~v~i~~d~-~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~---~gr~l 81 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQV-LNIQMRRTL-H-KAFKGSIFVVFDSIESAKKFVE-TPGQKY---KETDL 81 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCE-EEEEEECCC-T-TSCCCEEEEEESSHHHHHHHHT-SSCCCC---TTTTC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCE-EEEEEEECC-C-CCCccEEEEEECCHHHHHHHHH-cCCCEE---CCEEE
Confidence 346889999999999999999999876543 444444332 2 7788999999999999999999 777655 99998
Q ss_pred eec
Q 017670 281 LGS 283 (368)
Q Consensus 281 ~~S 283 (368)
...
T Consensus 82 ~V~ 84 (103)
T 1s79_A 82 LIL 84 (103)
T ss_dssp EEE
T ss_pred EEE
Confidence 744
No 145
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=98.53 E-value=1.8e-07 Score=77.65 Aligned_cols=78 Identities=15% Similarity=0.067 Sum_probs=66.0
Q ss_pred cccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecC-Ccee
Q 017670 202 HGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSN-GRPL 280 (368)
Q Consensus 202 ~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~-GRPL 280 (368)
.++.|||.||.+.+|.+||.++|...+-.-..+++++. ..|.|||-|.+.++|..|+..||+..+ + ||+|
T Consensus 119 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~------~~g~afV~f~~~~~A~~A~~~l~g~~~---~~g~~l 189 (198)
T 1qm9_A 119 PSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK------DRKMALIQMGSVEEAVQALIDLHNHDL---GENHHL 189 (198)
T ss_dssp CCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST------TSSCEEEECSSHHHHHHHHHHHTSSCC---SSCCSC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC------CCcEEEEEeCCHHHHHHHHHHhcCCcc---CCCCeE
Confidence 47899999999999999999999987624455666553 369999999999999999999999877 7 9999
Q ss_pred eeccCCCC
Q 017670 281 LGSIGTPC 288 (368)
Q Consensus 281 ~~S~g~~~ 288 (368)
..+.+.+.
T Consensus 190 ~v~~a~~~ 197 (198)
T 1qm9_A 190 RVSFSKST 197 (198)
T ss_dssp CEEEECCC
T ss_pred EEEeeccc
Confidence 98876653
No 146
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.52 E-value=3.7e-08 Score=77.14 Aligned_cols=78 Identities=14% Similarity=0.050 Sum_probs=62.2
Q ss_pred hcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCcee
Q 017670 201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 280 (368)
Q Consensus 201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL 280 (368)
..++.|||.||.+..|.+||+++|...+-. .++++-. . +..+.|.|||.|.+.++|+.|| .+|...| +||+|
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~--~v~i~~d-~-~g~~~G~afV~F~~~~~a~~Al-~~~~~~~---~gr~i 84 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSPLNPM--RVHIEIG-P-DGRVTGEADVEFATHEDAVAAM-AKDKANM---QHRYV 84 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCSCCCS--EEEEEES-S-SSCEEEEEEEECSSSHHHHHHH-TTSSCCS---SSSCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCce--EEEEEEC-C-CCCEeeEEEEEECCHHHHHHHH-HhCCCeE---CCcEE
Confidence 456899999999999999999999886632 5555433 2 5678899999999999999999 5677666 99998
Q ss_pred eeccCC
Q 017670 281 LGSIGT 286 (368)
Q Consensus 281 ~~S~g~ 286 (368)
.-....
T Consensus 85 ~V~~~~ 90 (102)
T 1wez_A 85 ELFLNS 90 (102)
T ss_dssp EEEEEC
T ss_pred EEEECC
Confidence 755443
No 147
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=98.52 E-value=2e-07 Score=80.60 Aligned_cols=78 Identities=15% Similarity=0.067 Sum_probs=66.8
Q ss_pred cccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecC-Ccee
Q 017670 202 HGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSN-GRPL 280 (368)
Q Consensus 202 ~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~-GRPL 280 (368)
.++.|||.||.+.+|.+||.++|...+-.-..+++++. ..|.|||.|.+.++|..||..||+..+ + ||+|
T Consensus 150 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~---~~g~~l 220 (229)
T 2adc_A 150 PSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK------DRKMALIQMGSVEEAVQALIDLHNHDL---GENHHL 220 (229)
T ss_dssp SCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS------STTCEEEEESSHHHHHHHHHHHTTCBS---SSSCBC
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC------CCcEEEEEECCHHHHHHHHHHHCCCcc---CCCCeE
Confidence 46899999999999999999999987524556666663 368999999999999999999999877 7 9999
Q ss_pred eeccCCCC
Q 017670 281 LGSIGTPC 288 (368)
Q Consensus 281 ~~S~g~~~ 288 (368)
..+.+.+.
T Consensus 221 ~v~~a~~~ 228 (229)
T 2adc_A 221 RVSFSKST 228 (229)
T ss_dssp EEEECSSC
T ss_pred EEEEecCC
Confidence 98887654
No 148
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=98.52 E-value=1.9e-07 Score=81.88 Aligned_cols=105 Identities=20% Similarity=0.200 Sum_probs=79.5
Q ss_pred HHHHHHHhcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceee
Q 017670 194 ERIRVAHEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLL 273 (368)
Q Consensus 194 e~lr~A~E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ 273 (368)
+.++......+.|||.||.+++|.+||.++|...+ -..+++ .++.|.|||.|.+.++|..||..||+..+
T Consensus 13 ~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G--i~~~~~-------~~~~g~afV~f~~~~~A~~A~~~l~~~~~- 82 (284)
T 3smz_A 13 EHTERQFRNRRKILIRGLPGDVTNQEVHDLLSDYE--LKYCFV-------DKYKGTAFVTLLNGEQAEAAINAFHQSRL- 82 (284)
T ss_dssp HHHHHHHHCCCEEEEECCCTTCCHHHHHHHTTTSC--EEEEEE-------ETTTTEEEEEESSHHHHHHHHHHHTTCEE-
T ss_pred hhhhccCCCCCEEEEeCCCCCCCHHHHHHHHHHcC--CEEEEE-------ecCCCEEEEEeCCHHHHHHHHHHcCCCee-
Confidence 44556677889999999999999999999999876 333333 56789999999999999999999999987
Q ss_pred ecCCceeeeccCCCCCCCCCCccccceehhhHHHHHHHHHHhhhc
Q 017670 274 LSNGRPLLGSIGTPCFTGKQSKFVGHLALDKLKFQMQREMREAVS 318 (368)
Q Consensus 274 ls~GRPL~~S~g~~~~p~k~s~f~GHl~i~k~r~q~qrEmr~AVS 318 (368)
+||+|..... |....-|+|.|.-+- ..+++++..+
T Consensus 83 --~g~~i~v~~~----~~~~~l~v~nlp~~~----t~~~l~~~f~ 117 (284)
T 3smz_A 83 --RERELSVQLQ----PTDALLCVANLPPSL----TQQQFEELVR 117 (284)
T ss_dssp --TTEECEEEEC----CCSCEEEEESCCTTC----CHHHHHHHHG
T ss_pred --CCeEEEEEec----CCCCEEEEcCCCCcC----CHHHHHHHHH
Confidence 8999987652 333456666665443 2345555443
No 149
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=98.52 E-value=1.3e-07 Score=75.63 Aligned_cols=81 Identities=11% Similarity=0.151 Sum_probs=63.8
Q ss_pred cccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCceee
Q 017670 202 HGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLL 281 (368)
Q Consensus 202 ~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL~ 281 (368)
.++.|||.||++.+|.+||+++|...+. -..++++... +..+.|.|||.|.+.++|..||..||+..++--.||||.
T Consensus 94 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~-i~~v~~~~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~ 170 (175)
T 3nmr_A 94 EDRKLFIGMISKKCTENDIRVMFSSFGQ-IEECRILRGP--DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMV 170 (175)
T ss_dssp GGSEEEEESCCTTCCHHHHHHHHGGGSC-EEEEEEEECT--TSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCE
T ss_pred CCCeEEEcCCCCcCCHHHHHHHHHhCCC-EEEEEEEECC--CCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeE
Confidence 5678999999999999999999987655 3455554432 356678999999999999999999999876322259998
Q ss_pred eccC
Q 017670 282 GSIG 285 (368)
Q Consensus 282 ~S~g 285 (368)
.+.+
T Consensus 171 V~~a 174 (175)
T 3nmr_A 171 VKFA 174 (175)
T ss_dssp EEEC
T ss_pred EEec
Confidence 6654
No 150
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.51 E-value=1.2e-07 Score=74.71 Aligned_cols=77 Identities=14% Similarity=0.120 Sum_probs=60.0
Q ss_pred hcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccC---CCCCceEEEEEechHHHHHHHHhhccceeeecCC
Q 017670 201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFA---SPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNG 277 (368)
Q Consensus 201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys---~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~G 277 (368)
...+.|||.||.+.+|.+||+++|.+.+...| +++ ..... ..+-|.|||.|.+.++|+.||..|++ | +|
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~--~~~-~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~--~---~G 77 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLVV--DWP-HKAESKSYFPPKGYAFLLFQEESSVQALIDACLE--E---DG 77 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCCE--ECT-TSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEE--E---TT
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEEE--EEe-ecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhh--c---CC
Confidence 34678999999999999999999998776662 222 22222 47789999999999999999999954 3 78
Q ss_pred ceeeeccC
Q 017670 278 RPLLGSIG 285 (368)
Q Consensus 278 RPL~~S~g 285 (368)
+.+++...
T Consensus 78 ~~~~~~~~ 85 (114)
T 2dnl_A 78 KLYLCVSS 85 (114)
T ss_dssp EEEEEECC
T ss_pred cEEEeccC
Confidence 87776543
No 151
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=98.51 E-value=2e-07 Score=76.44 Aligned_cols=82 Identities=10% Similarity=0.085 Sum_probs=62.1
Q ss_pred cccEEEEecCCCCCCchHHHHHHHHHhhcc-cee---cccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCC
Q 017670 202 HGTLVVLENLDPSYTSTVVEDLVWHAFKEN-CSA---KMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNG 277 (368)
Q Consensus 202 ~GtlV~LqNLDps~ts~dVedLi~~a~ke~-c~A---kmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~G 277 (368)
..+.|||.||.+.+|.+||.++|...+... |.. +.|..... .++.|.|||.|.+.++|+.|| .||+..| +|
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~-~~~~g~afV~F~~~~~A~~Al-~l~g~~~---~g 77 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI-NQDKNFAFLEFRSVDETTQAM-AFDGIIF---QG 77 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE-ETTTTEEEEEESCSHHHHHHG-GGTTEEE---TT
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe-cCCCCEEEEEeCCHHHHHHHH-HhcCCEE---cC
Confidence 568999999999999999999999975321 110 01111111 366899999999999999999 8998877 99
Q ss_pred ceeeeccCCCC
Q 017670 278 RPLLGSIGTPC 288 (368)
Q Consensus 278 RPL~~S~g~~~ 288 (368)
|+|........
T Consensus 78 ~~i~v~~~~~~ 88 (198)
T 2yh0_A 78 QSLKIRRPHDY 88 (198)
T ss_dssp EEEEEECCCCC
T ss_pred ceEEEeCCCCC
Confidence 99988766543
No 152
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.50 E-value=8.1e-08 Score=76.62 Aligned_cols=77 Identities=16% Similarity=0.163 Sum_probs=60.8
Q ss_pred hcccEEEEecCCCCCCchHHHHHHHHHhhc--cceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCc
Q 017670 201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKE--NCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGR 278 (368)
Q Consensus 201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke--~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GR 278 (368)
..++.|||.||.+..|.+||+++|...+.. -..++|+-. . +..+.|.|||.|.+.++|+.||. +|...| +||
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~-~-~g~~~G~afV~F~~~~~a~~Al~-~~g~~~---~gr 88 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYT-R-EGRQSGEAFVELESEDDVKLALK-KDRESM---GHR 88 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEEC-S-SSCEEEEEEEEBSSHHHHHHHGG-GTTEEE---TTE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEEC-C-CCCCCeEEEEEECCHHHHHHHHh-cCCCeE---CCe
Confidence 467899999999999999999999886551 122333322 1 26778999999999999999999 888766 999
Q ss_pred eeeec
Q 017670 279 PLLGS 283 (368)
Q Consensus 279 PL~~S 283 (368)
+|...
T Consensus 89 ~i~V~ 93 (118)
T 2db1_A 89 YIEVF 93 (118)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 98753
No 153
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.50 E-value=2.2e-07 Score=70.96 Aligned_cols=84 Identities=13% Similarity=0.025 Sum_probs=63.3
Q ss_pred HHhcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCc
Q 017670 199 AHEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGR 278 (368)
Q Consensus 199 A~E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GR 278 (368)
+.+..+.|||.||.+.+|.+||+++|...+.. ..++++ ....+..+-|.|||.|.+.++|..||.. ...| +||
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i-~~v~i~-~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~---~g~ 83 (103)
T 2cqg_A 11 AVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEV-LMVQVK-KDLKTGHSKGFGFVRFTEYETQVKVMSQ--RHMI---DGR 83 (103)
T ss_dssp CCCCCCCEEEESCCSSCCHHHHHHHHGGGSCE-EEEEEE-ECSSSCSEEEEEEEEESSHHHHHHHHHS--CEEE---TTE
T ss_pred ccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCe-EEEEEE-ecCCCCCccceEEEEECCHHHHHHHHHc--CCee---CCe
Confidence 34567899999999999999999999876543 233332 2223356678999999999999999994 2222 999
Q ss_pred eeeeccCCCCC
Q 017670 279 PLLGSIGTPCF 289 (368)
Q Consensus 279 PL~~S~g~~~~ 289 (368)
+|......+..
T Consensus 84 ~l~v~~a~~~~ 94 (103)
T 2cqg_A 84 WCDCKLPNSKQ 94 (103)
T ss_dssp EEEEECCCTTC
T ss_pred EEEEEecCCCC
Confidence 99988776543
No 154
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.50 E-value=1.4e-07 Score=75.69 Aligned_cols=76 Identities=14% Similarity=0.129 Sum_probs=61.7
Q ss_pred cccEEEEecCCC-CCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCcee
Q 017670 202 HGTLVVLENLDP-SYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 280 (368)
Q Consensus 202 ~GtlV~LqNLDp-s~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL 280 (368)
.++.|||.||.+ .+|.+||++||..-+. -..++|+.. -|.|||.|.+.++|+.||..||..-+.+ +||||
T Consensus 14 p~~~l~V~nLp~~~~te~dL~~lF~~fG~-V~~v~i~~~-------kg~aFVef~~~~~A~~Ai~~l~~~~~~~-~Gr~l 84 (102)
T 1x4d_A 14 TRRVVHIMDFQRGKNLRYQLLQLVEPFGV-ISNHLILNK-------INEAFIEMATTEDAQAAVDYYTTTPALV-FGKPV 84 (102)
T ss_dssp CCCEEEEESCCCSSSHHHHHHTTTGGGSC-EEEEEECSS-------SSCEEEEESSHHHHHHHHHHHHHSCCEE-TTEEC
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHhcCC-EEEEEEEcC-------CCEEEEEECCHHHHHHHHHHHcCCCceE-CCcEE
Confidence 478999999999 9999999999986554 455666532 3889999999999999999999643223 99999
Q ss_pred eeccCC
Q 017670 281 LGSIGT 286 (368)
Q Consensus 281 ~~S~g~ 286 (368)
+...+.
T Consensus 85 ~V~~a~ 90 (102)
T 1x4d_A 85 RVHLSQ 90 (102)
T ss_dssp EEEEEC
T ss_pred EEEECC
Confidence 987665
No 155
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=98.50 E-value=6.2e-08 Score=80.99 Aligned_cols=79 Identities=14% Similarity=0.131 Sum_probs=63.0
Q ss_pred hcccEEEEecCCCCCCchHHHHHHHHHhhc--cceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCc
Q 017670 201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKE--NCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGR 278 (368)
Q Consensus 201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke--~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GR 278 (368)
..++.|||.||.+..|.+||+++|...+.. --.++++- ... ..+.|.|||.|.+.++|+.||. +|...| +||
T Consensus 42 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~-d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l---~gr 115 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIY-TRE-GRQSGEAFVELGSEDDVKMALK-KDRESM---GHR 115 (136)
T ss_dssp CTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEE-CSS-SCEEEEEEEECSSHHHHHHHHT-TTEEES---SSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEE-CCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEE---CCE
Confidence 467899999999999999999999987652 12233332 222 6778999999999999999999 998877 999
Q ss_pred eeeeccC
Q 017670 279 PLLGSIG 285 (368)
Q Consensus 279 PL~~S~g 285 (368)
+|.-...
T Consensus 116 ~i~V~~a 122 (136)
T 2hgl_A 116 YIEVFKS 122 (136)
T ss_dssp EEEEEEC
T ss_pred EEEEEEC
Confidence 9985543
No 156
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=98.50 E-value=1.7e-07 Score=71.26 Aligned_cols=75 Identities=8% Similarity=0.019 Sum_probs=61.1
Q ss_pred HhcccEEEEecCCC-CCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCc
Q 017670 200 HEHGTLVVLENLDP-SYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGR 278 (368)
Q Consensus 200 ~E~GtlV~LqNLDp-s~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GR 278 (368)
...++.|||.||.+ .+|.+||+++|...+.. ..+++ +.|.|||.|.+.++|..||..||...| +||
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v-~~v~i---------~~g~afV~f~~~~~A~~A~~~l~g~~~---~g~ 73 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHI-MQINI---------KNAFGFIQFDNPQSVRDAIECESQEMN---FGK 73 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCC-CEEEE---------ETTEEEEEESCHHHHHHHHHHHTCSSC---BTT
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCE-EEEEE---------eCCEEEEEECCHHHHHHHHHHcCCCee---CCc
Confidence 35688999999999 99999999999886542 22332 269999999999999999999999987 899
Q ss_pred eeeeccCCC
Q 017670 279 PLLGSIGTP 287 (368)
Q Consensus 279 PL~~S~g~~ 287 (368)
+|......+
T Consensus 74 ~l~V~~a~~ 82 (96)
T 2kvi_A 74 KLILEVSSS 82 (96)
T ss_dssp TBCEEEEEC
T ss_pred EEEEEEcCc
Confidence 998766543
No 157
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=98.49 E-value=1.2e-07 Score=76.06 Aligned_cols=78 Identities=13% Similarity=0.089 Sum_probs=63.5
Q ss_pred ccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCceeee
Q 017670 203 GTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLLG 282 (368)
Q Consensus 203 GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL~~ 282 (368)
++.|||.||.+.+|.+||.++|...+.. ..++++. ..-+..+.|.|||-|.+.++|..|+..||+..+ +||+|..
T Consensus 94 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v-~~v~i~~-~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~---~g~~l~V 168 (172)
T 2g4b_A 94 AHKLFIGGLPNYLNDDQVKELLTSFGPL-KAFNLVK-DSATGLSKGYAFCEYVDINVTDQAIAGLNGMQL---GDKKLLV 168 (172)
T ss_dssp TTCEEEECCCTTCCHHHHHHHHHTTSCE-EEEEEEE-CTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEE---TTEECEE
T ss_pred CCEEEEEcCCCcCCHHHHHHHHHhcCCc-eEEEEEe-cCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEE---CCeEEEE
Confidence 7899999999999999999999976543 3444332 223456678999999999999999999999887 9999986
Q ss_pred ccC
Q 017670 283 SIG 285 (368)
Q Consensus 283 S~g 285 (368)
+.+
T Consensus 169 ~~A 171 (172)
T 2g4b_A 169 QRA 171 (172)
T ss_dssp EEC
T ss_pred EeC
Confidence 643
No 158
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.49 E-value=3.6e-07 Score=69.06 Aligned_cols=77 Identities=12% Similarity=-0.014 Sum_probs=61.0
Q ss_pred cccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCc-eEEEEEechHHHHHHHHhhccceeeecCCcee
Q 017670 202 HGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFG-QSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 280 (368)
Q Consensus 202 ~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG-~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL 280 (368)
.-+.|||.||.+.+|.+||+++|...+..... + + ++.+| .|||.|.+.++|+.||. ||...| +||+|
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~-----~-~~~~g~~afV~f~~~~~a~~ai~-l~g~~~---~g~~l 74 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--V-----M-DKDKGVFAIVEMGDVGAREAVLS-QSQHSL---GGHRL 74 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--E-----E-CSSSCCEEEEEESSHHHHHHHHT-CSCCEE---TTEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--E-----E-cCCCCcEEEEEECCHHHHHHHHh-cCCeEE---CCEEE
Confidence 34689999999999999999999876654421 1 1 22333 89999999999999999 999887 99999
Q ss_pred eeccCCCCCC
Q 017670 281 LGSIGTPCFT 290 (368)
Q Consensus 281 ~~S~g~~~~p 290 (368)
....+.+..+
T Consensus 75 ~V~~a~~~~~ 84 (94)
T 2e5g_A 75 RVRPREQKEF 84 (94)
T ss_dssp CCBCSCCSCC
T ss_pred EEEECCcCCC
Confidence 9876654443
No 159
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.49 E-value=1.3e-07 Score=77.59 Aligned_cols=78 Identities=26% Similarity=0.255 Sum_probs=62.0
Q ss_pred hcccEEEEecCCCC-CCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCce
Q 017670 201 EHGTLVVLENLDPS-YTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRP 279 (368)
Q Consensus 201 E~GtlV~LqNLDps-~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRP 279 (368)
+.++.|||.||.+. +|.+||++||..-+. -..++|+ +.-|.|||.|.+.++|..||..||..-+.+ +|||
T Consensus 23 ~p~~~l~V~NLp~~~~te~~L~~lF~~fG~-V~~v~i~-------~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l-~Gr~ 93 (112)
T 1x4f_A 23 ELGRVIHLSNLPHSGYSDSAVLKLAEPYGK-IKNYILM-------RMKSQAFIEMETREDAMAMVDHCLKKALWF-QGRC 93 (112)
T ss_dssp CCCCEEEEESCCCSSCCSHHHHTTTTTTSC-CSEEEEE-------TTTTEEEEECSSHHHHHHHHHHHHHSCCCS-SSSC
T ss_pred CCCCEEEEeCCCCccCCHHHHHHHHHhcCC-EEEEEEe-------cCCCEEEEEECCHHHHHHHHHHhccCCceE-CCEE
Confidence 35899999999997 999999999987554 4455554 235999999999999999999997532222 9999
Q ss_pred eeeccCCC
Q 017670 280 LLGSIGTP 287 (368)
Q Consensus 280 L~~S~g~~ 287 (368)
|....+..
T Consensus 94 l~V~~a~~ 101 (112)
T 1x4f_A 94 VKVDLSEK 101 (112)
T ss_dssp CEEEEECS
T ss_pred EEEEECcc
Confidence 99877643
No 160
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=98.47 E-value=2e-07 Score=76.49 Aligned_cols=83 Identities=12% Similarity=0.095 Sum_probs=67.0
Q ss_pred hcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCcee
Q 017670 201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 280 (368)
Q Consensus 201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL 280 (368)
..++.|||.||.+.+|.+||.++|...+.. ..++++.. .-+..+.|.|||.|.+.++|..||..||+..| +||+|
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v-~~~~~~~~-~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~l 186 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPL-KAFNLVKD-SATGLSKGYAFCEYVDINVTDQAIAGLNGMQL---GDKKL 186 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCE-EEEEEEEC-TTTCSEEEEEEEEESSSSHHHHHHHHHTTCEE---TTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCc-cEEEEeec-CCCCCcceEEEEEECCHHHHHHHHHHcCCCEE---CCEEE
Confidence 456899999999999999999999875543 34443322 22356688999999999999999999999887 99999
Q ss_pred eeccCCCC
Q 017670 281 LGSIGTPC 288 (368)
Q Consensus 281 ~~S~g~~~ 288 (368)
..+...+.
T Consensus 187 ~v~~a~~~ 194 (198)
T 2yh0_A 187 LVQRASVG 194 (198)
T ss_dssp EEEESCCC
T ss_pred EEEECCCC
Confidence 98877654
No 161
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=98.47 E-value=2.9e-07 Score=80.95 Aligned_cols=86 Identities=14% Similarity=0.127 Sum_probs=67.4
Q ss_pred HHHhcccEEEEecCCCC-CCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecC
Q 017670 198 VAHEHGTLVVLENLDPS-YTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSN 276 (368)
Q Consensus 198 ~A~E~GtlV~LqNLDps-~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~ 276 (368)
.....++.|||.||.+. +|.+||.++|...+ .-..++++.....+..+.|.|||-|.+.++|..|| .||+..| +
T Consensus 205 ~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G-~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~---~ 279 (292)
T 2ghp_A 205 SATLEGREIMIRNLSTELLDENLLRESFEGFG-SIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLL---G 279 (292)
T ss_dssp --CCTTTEEEEEEECTTTCCHHHHHHHHGGGS-CEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEE---T
T ss_pred ccCCCCceEEEECCCcccCCHHHHHHHHhccC-CeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEE---C
Confidence 34567899999999999 99999999998744 33445555432213677899999999999999999 9999987 9
Q ss_pred CceeeeccCCCC
Q 017670 277 GRPLLGSIGTPC 288 (368)
Q Consensus 277 GRPL~~S~g~~~ 288 (368)
||+|..+.+.+.
T Consensus 280 g~~i~V~~a~~k 291 (292)
T 2ghp_A 280 NREISVSLADKK 291 (292)
T ss_dssp TEEEEEEECCCC
T ss_pred CcEEEEEEecCC
Confidence 999998887654
No 162
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=98.47 E-value=1.2e-07 Score=84.28 Aligned_cols=82 Identities=12% Similarity=0.005 Sum_probs=65.0
Q ss_pred cccEEEEecCCCCCCchHHHHHHHHHhh-ccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCcee
Q 017670 202 HGTLVVLENLDPSYTSTVVEDLVWHAFK-ENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 280 (368)
Q Consensus 202 ~GtlV~LqNLDps~ts~dVedLi~~a~k-e~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL 280 (368)
..+.|||.||.+.+|.+||+++|...+- .-..++++- ...+...-|.|||.|.+.++|+.||..||...| +||+|
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~-d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~---~Gr~l 142 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFE-NRANGQSKGFALVGVGSEASSKKLMDLLPKREL---HGQNP 142 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEE-CTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCB---TTBCC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEe-cCCCCccceEEEEEECCHHHHHHHHHHcCCCeE---CCEEe
Confidence 6789999999999999999999987652 344554442 233456678999999999999999999999988 99999
Q ss_pred eeccCCC
Q 017670 281 LGSIGTP 287 (368)
Q Consensus 281 ~~S~g~~ 287 (368)
......+
T Consensus 143 ~V~~a~~ 149 (229)
T 3q2s_C 143 VVTPVNK 149 (229)
T ss_dssp EEEECCH
T ss_pred EEEECCC
Confidence 9776543
No 163
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.47 E-value=3.7e-07 Score=75.01 Aligned_cols=74 Identities=18% Similarity=0.252 Sum_probs=59.2
Q ss_pred cccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCceee
Q 017670 202 HGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLL 281 (368)
Q Consensus 202 ~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL~ 281 (368)
.-|+|||.||....+.++|..-+.+.|.. |--+++..+. |+|||.|...++|..|+++||+--| +||||.
T Consensus 8 ~~T~lYV~NL~~~~~~~~lk~~L~~lF~~-yGG~Vl~Vtg------G~AfV~F~~~esA~~A~~~l~G~~l---~gr~i~ 77 (96)
T 2diu_A 8 CHTLLYVYNLPANKDGKSVSNRLRRLSDN-CGGKVLSITG------CSAILRFINQDSAERAQKRMENEDV---FGNRII 77 (96)
T ss_dssp SSEEEEEESCCTTSCHHHHHHHHHHHHHT-TTCCEEECCT------TCEEEEESSHHHHHHHHHHHTTCCS---SSSCCE
T ss_pred cceEEEEeCCCCcCCHHHHHHHHHHHHHH-cCCeeEEEec------CEEEEEECCHHHHHHHHHHhcCCcc---CCceEE
Confidence 46889999999999999977666666654 2112222232 9999999999999999999999988 999999
Q ss_pred eccC
Q 017670 282 GSIG 285 (368)
Q Consensus 282 ~S~g 285 (368)
-+.+
T Consensus 78 v~~A 81 (96)
T 2diu_A 78 VSFT 81 (96)
T ss_dssp EESS
T ss_pred EEec
Confidence 7766
No 164
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=97.85 E-value=1.9e-08 Score=78.81 Aligned_cols=86 Identities=14% Similarity=0.108 Sum_probs=68.0
Q ss_pred hcccEEEEecCCCCCCchHHHHHHHHHhhccce-------ecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceee
Q 017670 201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCS-------AKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLL 273 (368)
Q Consensus 201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~-------AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ 273 (368)
...+.|||.||.+.+|.+||+++|...+..... +++ +.......+.|.|||.|.+.++|..||..||...|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i-~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~- 82 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINL-YTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF- 82 (116)
Confidence 356889999999999999999999987765321 222 22223356789999999999999999999999877
Q ss_pred ecCCceeeeccCCCCCC
Q 017670 274 LSNGRPLLGSIGTPCFT 290 (368)
Q Consensus 274 ls~GRPL~~S~g~~~~p 290 (368)
+||+|....+.+...
T Consensus 83 --~g~~l~V~~a~~~~~ 97 (116)
T 2lcw_A 83 --SGNPIKVSFATRRAD 97 (116)
Confidence 899999877765543
No 165
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=98.46 E-value=2.8e-07 Score=80.19 Aligned_cols=74 Identities=12% Similarity=0.137 Sum_probs=62.5
Q ss_pred cccEEEEecCC-CCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCcee
Q 017670 202 HGTLVVLENLD-PSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 280 (368)
Q Consensus 202 ~GtlV~LqNLD-ps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL 280 (368)
.++.|||.||+ +.+|.+++.+||...+. -..++++.. +-|.|||.|.+.++|+.||..||+..| +||||
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~-v~~v~i~~~------~~g~afV~f~~~~~A~~Ai~~lng~~~---~g~~l 72 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGN-VEKVKFMKS------KPGAAMVEMADGYAVDRAITHLNNNFM---FGQKM 72 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSC-EEEEEECTT------STTCEEEEESSHHHHHHHHHHHTTCEE---TTEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCC-eEEEEEecC------CCCEEEEEECCHHHHHHHHHHhCCCEE---CCceE
Confidence 57899999999 69999999999987554 445555532 359999999999999999999999988 99999
Q ss_pred eeccC
Q 017670 281 LGSIG 285 (368)
Q Consensus 281 ~~S~g 285 (368)
.....
T Consensus 73 ~v~~s 77 (205)
T 3tyt_A 73 NVCVS 77 (205)
T ss_dssp EEEEC
T ss_pred EEEEc
Confidence 87754
No 166
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=98.46 E-value=2.2e-07 Score=74.31 Aligned_cols=110 Identities=13% Similarity=0.118 Sum_probs=76.5
Q ss_pred cccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCC--CCCceEEEEEechHHHHHHHHhhccceeeecCCce
Q 017670 202 HGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFAS--PYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRP 279 (368)
Q Consensus 202 ~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~--p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRP 279 (368)
..+.|||.||.+.+|.+||+++|...+. -..++++. ....+ .+.|.|||.|.+.++|..||..||+..++-..++|
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~-i~~v~i~~-~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~ 79 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGA-VYEINVLR-DRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHP 79 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSC-EEEEEEEE-ECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCC-EEEEEEEe-cCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccc
Confidence 4688999999999999999999988664 33444432 22222 56789999999999999999999998774444788
Q ss_pred eeeccCCCCCC---CCCCccccceehhhHHHHHHHHHHhhh
Q 017670 280 LLGSIGTPCFT---GKQSKFVGHLALDKLKFQMQREMREAV 317 (368)
Q Consensus 280 L~~S~g~~~~p---~k~s~f~GHl~i~k~r~q~qrEmr~AV 317 (368)
+......+... ....-|+|.|.-+- ..+++++..
T Consensus 80 ~~~~~~~~~~~~~~~~~~l~v~nl~~~~----t~~~l~~~F 116 (175)
T 3nmr_A 80 IQMKPADSEKNNAVEDRKLFIGMISKKC----TENDIRVMF 116 (175)
T ss_dssp CEEEECGGGCCSCGGGSEEEEESCCTTC----CHHHHHHHH
T ss_pred eEEccccccccccCCCCeEEEcCCCCcC----CHHHHHHHH
Confidence 87665544333 22445666665442 224455544
No 167
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=98.44 E-value=1.9e-07 Score=74.44 Aligned_cols=77 Identities=19% Similarity=0.216 Sum_probs=61.5
Q ss_pred cccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCC--ce
Q 017670 202 HGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNG--RP 279 (368)
Q Consensus 202 ~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~G--RP 279 (368)
.++.|+|.||.+.+|.+||.++|...+.. ..+++ ++...+..+.|.|||-|.+.++|..|+..||+..+ +| ||
T Consensus 88 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i-~~~~i-~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~---~g~~~~ 162 (168)
T 1b7f_A 88 KDTNLYVTNLPRTITDDQLDTIFGKYGSI-VQKNI-LRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIP---EGGSQP 162 (168)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHHTSSSCE-EEEEE-EECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCC---TTCSSC
T ss_pred CCCCEEEeCCCCCCCHHHHHHhhhcCCcE-EEEEE-EEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEe---cCCCeE
Confidence 46889999999999999999999875542 33333 23333456779999999999999999999999977 77 99
Q ss_pred eeec
Q 017670 280 LLGS 283 (368)
Q Consensus 280 L~~S 283 (368)
|.-+
T Consensus 163 l~V~ 166 (168)
T 1b7f_A 163 LSVR 166 (168)
T ss_dssp CEEE
T ss_pred EEEE
Confidence 8754
No 168
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=98.42 E-value=1.4e-07 Score=79.31 Aligned_cols=82 Identities=13% Similarity=0.052 Sum_probs=64.4
Q ss_pred HHhcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCc
Q 017670 199 AHEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGR 278 (368)
Q Consensus 199 A~E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GR 278 (368)
+.+.++.|||.||.+..|.+||+++|...+ . ..++++-.. +..+.|.|||.|.+.++|+.|| .+|...| +||
T Consensus 42 ~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i-~~v~i~~d~--~g~srGfaFV~F~~~e~A~~Al-~~~g~~l---~gR 113 (139)
T 2hgn_A 42 QSTTGHCVHMRGLPYKATENDIYNFFSPLN-P-VRVHIEIGP--DGRVTGEADVEFATHEEAVAAM-SKDRANM---QHR 113 (139)
T ss_dssp ---CCCCEECCSCCTTCCHHHHHHHHCSCC-C-SEEECCCSS--SSCSSCCCEEECSHHHHHHHHT-TCCSCSS---SSC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-C-eEEEEEECC--CCCCceEEEEEeCCHHHHHHHH-hhCCCEE---CCE
Confidence 456788999999999999999999999866 3 355554332 2678899999999999999999 7888766 999
Q ss_pred eeeeccCCCC
Q 017670 279 PLLGSIGTPC 288 (368)
Q Consensus 279 PL~~S~g~~~ 288 (368)
+|.-....+.
T Consensus 114 ~i~V~~a~~~ 123 (139)
T 2hgn_A 114 YIELFLNSTT 123 (139)
T ss_dssp CCCCEECCCS
T ss_pred EEEEEECCCC
Confidence 9876555443
No 169
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=98.41 E-value=2.8e-07 Score=76.56 Aligned_cols=76 Identities=17% Similarity=0.111 Sum_probs=58.7
Q ss_pred hcccEEEEecCCCCCCchHHHHHHHHHhhccc-eecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCce
Q 017670 201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENC-SAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRP 279 (368)
Q Consensus 201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c-~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRP 279 (368)
+..+.|||.||.+..|.+||+++|... ...- .++++ .... ..+.|.|||.|.+.++|+.||.. ++..| +||+
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~-~d~~-GrsrGfaFV~F~~~e~A~~Al~~-~~~~l---~gR~ 112 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLP-VDPE-GKITGEAFVQFASQELAEKALGK-HKERI---GHRY 112 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECC-CCSS-SSSCSEEEEEESSTTHHHHHHTT-TTCCB---TTBC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEE-ECCC-CCCceEEEEEECCHHHHHHHHHH-CCCEE---CCEE
Confidence 456889999999999999999999875 3220 33333 2222 67889999999999999999986 55555 9999
Q ss_pred eeec
Q 017670 280 LLGS 283 (368)
Q Consensus 280 L~~S 283 (368)
|.-.
T Consensus 113 I~V~ 116 (126)
T 2hgm_A 113 IEVF 116 (126)
T ss_dssp CCCE
T ss_pred EEEE
Confidence 8643
No 170
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=98.41 E-value=2.9e-07 Score=80.67 Aligned_cols=84 Identities=15% Similarity=0.158 Sum_probs=69.0
Q ss_pred hcccEEEEecCCCCC-CchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCce
Q 017670 201 EHGTLVVLENLDPSY-TSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRP 279 (368)
Q Consensus 201 E~GtlV~LqNLDps~-ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRP 279 (368)
..++.|||.||.+.+ |.+||.++|...+. -..++++... +..+.|.|||-|.+.++|..|+..||+..| +|||
T Consensus 182 ~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~-i~~v~i~~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~---~g~~ 255 (284)
T 3smz_A 182 LHSRCLCVDRLPPGFNDVDALCRALSAVHS-PTFCQLACGQ--DGQLKGFAVLEYETAEMAEEAQQQADGLSL---GGSH 255 (284)
T ss_dssp TSCSEEEEECCCTTCCCHHHHHHHTCSSSC-CSEEEEEECS--SCCEEEEEEEECSSHHHHHHHHHHHTTCEE---TTEE
T ss_pred CCccEEEEecCCcccCCHHHHHHHhhCCCC-eEEEEEEECC--CCCcccEEEEEeCCHHHHHHHHHHhCCCcc---CCeE
Confidence 568899999999998 77999999986543 3444444332 467789999999999999999999999988 9999
Q ss_pred eeeccCCCCCC
Q 017670 280 LLGSIGTPCFT 290 (368)
Q Consensus 280 L~~S~g~~~~p 290 (368)
|..+.+.+..+
T Consensus 256 l~v~~a~~~~~ 266 (284)
T 3smz_A 256 LRVSFCAPGPP 266 (284)
T ss_dssp CEEEECCSSSC
T ss_pred EEEEEecCCCc
Confidence 99998876654
No 171
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=98.40 E-value=4.5e-07 Score=75.28 Aligned_cols=76 Identities=17% Similarity=0.197 Sum_probs=62.4
Q ss_pred cccEEEEecCCC-CCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCcee
Q 017670 202 HGTLVVLENLDP-SYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 280 (368)
Q Consensus 202 ~GtlV~LqNLDp-s~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL 280 (368)
.++.|||.||.+ .+|.+||+++|...+.. ...+++.. ..|.|||.|.+.++|..||..||+..+ +||+|
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i-~~v~i~~~------~~g~afV~f~~~~~a~~A~~~l~~~~~---~g~~l 71 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDV-QRVKILFN------KKENALVQMADGNQAQLAMSHLNGHKL---HGKPI 71 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCC-SEEECSTT------CSSCCEEECTTTHHHHHHHHHHTTCCC---SSCCC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCE-EEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCee---cCeEE
Confidence 368999999999 99999999999886653 33433321 278999999999999999999999877 99999
Q ss_pred eeccCCC
Q 017670 281 LGSIGTP 287 (368)
Q Consensus 281 ~~S~g~~ 287 (368)
......+
T Consensus 72 ~v~~a~~ 78 (198)
T 1qm9_A 72 RITLSKH 78 (198)
T ss_dssp EEEECCC
T ss_pred EEEEecC
Confidence 8876543
No 172
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.39 E-value=2.3e-07 Score=76.32 Aligned_cols=76 Identities=18% Similarity=0.169 Sum_probs=60.3
Q ss_pred HhcccEEEEecCCCCCCchHHHHHHHHHhhcc---ceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecC
Q 017670 200 HEHGTLVVLENLDPSYTSTVVEDLVWHAFKEN---CSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSN 276 (368)
Q Consensus 200 ~E~GtlV~LqNLDps~ts~dVedLi~~a~ke~---c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~ 276 (368)
-+.++.|||.||.+..|.+||+++|...+... -.++|+-. .+.++.|.|||.|.+.++|+.||.+ |...| +
T Consensus 20 ~~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d--~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l---~ 93 (123)
T 2dha_A 20 KENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTY--PDGRPTGDAFVLFACEEYAQNALRK-HKDLL---G 93 (123)
T ss_dssp CCSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEEC--TTSCEEEEEEECCSSHHHHHHHHTT-TTEES---S
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEEC--CCCCEeeEEEEEECCHHHHHHHHHh-CCCee---C
Confidence 35678999999999999999999999865421 22333332 2467889999999999999999997 77666 8
Q ss_pred Cceee
Q 017670 277 GRPLL 281 (368)
Q Consensus 277 GRPL~ 281 (368)
||+|.
T Consensus 94 gR~i~ 98 (123)
T 2dha_A 94 KRYIE 98 (123)
T ss_dssp SCEEC
T ss_pred CeEEE
Confidence 99876
No 173
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=98.37 E-value=4.1e-07 Score=74.45 Aligned_cols=86 Identities=10% Similarity=0.011 Sum_probs=62.6
Q ss_pred hcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCcee
Q 017670 201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 280 (368)
Q Consensus 201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL 280 (368)
...+.|||.||.+.+|.+||.++|...+. -..++++. ..-+..+.|.|||-|.+.++|..||.. ++..| +||+|
T Consensus 102 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~-i~~v~i~~-~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~---~G~~i 175 (196)
T 1l3k_A 102 LTVKKIFVGGIKEDTEEHHLRDYFEQYGK-IEVIEIMT-DRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTV---NGHNC 175 (196)
T ss_dssp -CCSEEEEECCTTTCCHHHHHHHHTTTSC-EEEEEEEE-CTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEE---TTEEC
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHhcCCC-eEEEEEee-cCCCCCccceEEEEECCHHHHHHHHHh-CCcEE---CCEEE
Confidence 44589999999999999999999986543 33343332 222356788999999999999999987 66555 99999
Q ss_pred eeccCCCCCCCC
Q 017670 281 LGSIGTPCFTGK 292 (368)
Q Consensus 281 ~~S~g~~~~p~k 292 (368)
..+.+.+....+
T Consensus 176 ~v~~a~~k~~~~ 187 (196)
T 1l3k_A 176 EVRKALSKQEMA 187 (196)
T ss_dssp EEEECC------
T ss_pred EEEecCChhHhc
Confidence 988887765544
No 174
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=98.37 E-value=5.8e-07 Score=73.57 Aligned_cols=83 Identities=12% Similarity=0.031 Sum_probs=64.2
Q ss_pred HhcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCce
Q 017670 200 HEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRP 279 (368)
Q Consensus 200 ~E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRP 279 (368)
.+..+.|||.||.+.+|.+||+++|...+.. ..++++. ...+..+.|.|||.|.+.++|..||.. ++..| +||+
T Consensus 10 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i-~~v~i~~-~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~---~g~~ 83 (196)
T 1l3k_A 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTL-TDCVVMR-DPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKV---DGRV 83 (196)
T ss_dssp CGGGGEEEEESCCTTCCHHHHHHHHGGGSCE-EEEEEEE-CTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEE---TTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCE-EEEEEEE-cCCCCCccceEEEEeCCHHHHHHHHhc-CCCEE---CCEE
Confidence 3568899999999999999999999986653 3444433 223356678999999999999999977 66555 9999
Q ss_pred eeeccCCCC
Q 017670 280 LLGSIGTPC 288 (368)
Q Consensus 280 L~~S~g~~~ 288 (368)
|......+.
T Consensus 84 l~v~~~~~~ 92 (196)
T 1l3k_A 84 VEPKRAVSR 92 (196)
T ss_dssp CEEEECCC-
T ss_pred eeeecccCc
Confidence 987766543
No 175
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=98.36 E-value=8.4e-07 Score=86.33 Aligned_cols=83 Identities=8% Similarity=0.019 Sum_probs=67.6
Q ss_pred hcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCcee
Q 017670 201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 280 (368)
Q Consensus 201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL 280 (368)
...+.|||.||.+.+|.++|.++|...+.. ..++|+ .......+.|.|||.|.+.++|..||..||+..| +|++|
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I-~~v~i~-~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i---~gr~i 174 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPI-KRIHMV-YSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKI---DGRRV 174 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCe-eEEEee-ccCCCCCccceEEEeeccHHHHHHHHHHcCCCEE---CCEEE
Confidence 345899999999999999999999986544 344443 2233456789999999999999999999999987 99999
Q ss_pred eeccCCCC
Q 017670 281 LGSIGTPC 288 (368)
Q Consensus 281 ~~S~g~~~ 288 (368)
....+.+.
T Consensus 175 ~V~~a~~~ 182 (437)
T 3pgw_S 175 LVDVERGR 182 (437)
T ss_pred EEEEeCCC
Confidence 98877653
No 176
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=98.36 E-value=9.5e-07 Score=76.85 Aligned_cols=71 Identities=10% Similarity=-0.020 Sum_probs=60.1
Q ss_pred cccEEEEecCCCCCCchHHHHHHHHHhhcc-ceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCc
Q 017670 202 HGTLVVLENLDPSYTSTVVEDLVWHAFKEN-CSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGR 278 (368)
Q Consensus 202 ~GtlV~LqNLDps~ts~dVedLi~~a~ke~-c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GR 278 (368)
-++.|||.||.+++|.+||++||...+... +.+++++.. +...|.|||-|.+.++|..||..||+.-| +|+
T Consensus 122 p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~---~~~~g~gfV~f~~~~~A~~Ai~~lng~~~---~g~ 193 (205)
T 3tyt_A 122 PSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK---SERSSSGLLEWDSKSDALETLGFLNHYQM---KNP 193 (205)
T ss_dssp CCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC---SSSSEEEEEECSSHHHHHHHHHHHTTCEE---CCS
T ss_pred CcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC---CCCceEEEEEeCCHHHHHHHHHHhCCCCc---cCC
Confidence 467899999999999999999999977653 677777654 23459999999999999999999999977 555
No 177
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=98.35 E-value=8e-07 Score=70.98 Aligned_cols=95 Identities=16% Similarity=0.163 Sum_probs=68.5
Q ss_pred cccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCceee
Q 017670 202 HGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLL 281 (368)
Q Consensus 202 ~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL~ 281 (368)
..+.|||.||.+.+|.+||.++|...+. -...+++ +...+..+.|.|||.|.+.++|+.||... . .+ +||+|.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~-i~~v~i~-~~~~~g~~~g~afV~f~~~~~a~~A~~~~--~--~~-~g~~i~ 74 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGT-VTDLKIM-KDPATGRSRGFGFLSFEKPSSVDEVVKTQ--H--IL-DGKVID 74 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCC-EEEEECC-CCTTTSSCCSCEEEEESSTHHHHHHHHSC--C--EE-TTEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCC-EEEEEEE-ECCCCCCccceEEEEEccHHHHHHHHhcc--c--cc-CCeEcc
Confidence 5789999999999999999999988664 3334333 33344678899999999999999999952 2 23 999998
Q ss_pred eccCCCCCCC--CCCccccceehh
Q 017670 282 GSIGTPCFTG--KQSKFVGHLALD 303 (368)
Q Consensus 282 ~S~g~~~~p~--k~s~f~GHl~i~ 303 (368)
.....+.... ...-|+|.|.-+
T Consensus 75 v~~~~~~~~~~~~~~l~V~nlp~~ 98 (167)
T 2cjk_A 75 PKRAIPRDEQDKTGKIFVGGIGPD 98 (167)
T ss_dssp CEECCCHHHHHHCEEEEEEEECTT
T ss_pred cccccchhhccCCCeEEECCCCCC
Confidence 7665443322 134566666544
No 178
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=98.35 E-value=5.2e-07 Score=77.20 Aligned_cols=79 Identities=24% Similarity=0.190 Sum_probs=63.5
Q ss_pred hcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCcee
Q 017670 201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 280 (368)
Q Consensus 201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL 280 (368)
...+.|||.||.+.+|.+||.++|...+. -..++++.. .+.+.|.|||.|.+.++|+.||..||+..| +||+|
T Consensus 101 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~-i~~~~i~~d---~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~---~g~~i 173 (213)
T 4f02_A 101 SGVGNIFIKNLDKSIDNKALYDTFSAFGN-ILSCKVVCD---ENGSKGYGFVHFETQEAAERAIEKMNGMLL---NDRKV 173 (213)
T ss_dssp HCTTEEEEESCCTTCCHHHHHHHHGGGSC-EEEEEEEEE---TTEEEEEEEEEESSHHHHHHHHHHHTTCEE---TTEEC
T ss_pred cccccceECCcccccHHHHHHHHHhhcCC-eEEEEeecc---CCCCceEEEEEeCCHHHHHHHHHHhCCCEE---CCEEE
Confidence 34567999999999999999999987554 344544432 134578999999999999999999999877 99999
Q ss_pred eeccCC
Q 017670 281 LGSIGT 286 (368)
Q Consensus 281 ~~S~g~ 286 (368)
.-..+.
T Consensus 174 ~V~~a~ 179 (213)
T 4f02_A 174 FVGRFK 179 (213)
T ss_dssp EEEECC
T ss_pred EEEEcC
Confidence 876654
No 179
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=98.35 E-value=1.4e-06 Score=75.38 Aligned_cols=77 Identities=17% Similarity=0.194 Sum_probs=63.7
Q ss_pred hcccEEEEecCCC-CCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCce
Q 017670 201 EHGTLVVLENLDP-SYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRP 279 (368)
Q Consensus 201 E~GtlV~LqNLDp-s~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRP 279 (368)
..++.|||.||.+ .+|.+||+++|...+.. ..++++.. ..|.|||.|.+.++|+.||..||+..+ +||+
T Consensus 32 ~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i-~~v~i~~~------~~g~afV~F~~~~~A~~Ai~~l~g~~~---~g~~ 101 (229)
T 2adc_A 32 AGNSVLLVSNLNPERVTPQSLFILFGVYGDV-QRVKILFN------KKENALVQMADGNQAQLAMSHLNGHKL---HGKP 101 (229)
T ss_dssp CCCSEEEEESCCTTTCCHHHHHHHHHHHTCE-EEEEECCT------TSCCEEEEESCHHHHHHHHHHHTTCBC---SSSB
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhCCCe-EEEEEEEC------CCCEEEEEECCHHHHHHHHHHhCCCeE---CCeE
Confidence 4578999999999 99999999999887653 33444332 168999999999999999999999877 9999
Q ss_pred eeeccCCC
Q 017670 280 LLGSIGTP 287 (368)
Q Consensus 280 L~~S~g~~ 287 (368)
|......+
T Consensus 102 l~v~~a~~ 109 (229)
T 2adc_A 102 IRITLSKH 109 (229)
T ss_dssp CEEECCSC
T ss_pred EEEEEecC
Confidence 99876654
No 180
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=98.34 E-value=1e-06 Score=77.58 Aligned_cols=97 Identities=18% Similarity=0.214 Sum_probs=70.3
Q ss_pred cccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCceee
Q 017670 202 HGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLL 281 (368)
Q Consensus 202 ~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL~ 281 (368)
..+.|||.||.+.+|.+||.++|...+-.-..++++.... +.+.|.|||.|.+.++|..||..||+..| +||+|.
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~--~~~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~l~ 190 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF--NTSRRFAYIDVTSKEDARYCVEKLNGLKI---EGYTLV 190 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC---------CCEEEEECSSHHHHHHHHHHHTTCEE---TTEECE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC--CCcceEEEEEECCHHHHHHHHHHhCCCEe---CCcEEE
Confidence 5789999999999999999999999662334444443222 56789999999999999999999999887 999999
Q ss_pred eccCCCCCCC---------CCCccccceehh
Q 017670 282 GSIGTPCFTG---------KQSKFVGHLALD 303 (368)
Q Consensus 282 ~S~g~~~~p~---------k~s~f~GHl~i~ 303 (368)
.....+.... ...-|+|+|.-+
T Consensus 191 v~~a~~~~~~~~~~~~~~~~~~l~v~nlp~~ 221 (292)
T 2ghp_A 191 TKVSNPLEKSKRTDSATLEGREIMIRNLSTE 221 (292)
T ss_dssp EEECCCC---------CCTTTEEEEEEECTT
T ss_pred EEECCCCcccccccccCCCCceEEEECCCcc
Confidence 8776544322 133466666544
No 181
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=98.34 E-value=6.8e-07 Score=76.49 Aligned_cols=96 Identities=17% Similarity=0.180 Sum_probs=71.6
Q ss_pred cccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCceee
Q 017670 202 HGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLL 281 (368)
Q Consensus 202 ~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL~ 281 (368)
-.|.|||.||.+.+|.+||+++|...+.. ..++++ +...+..+.|.|||.|.+.++|+.||..+|...+ +||++.
T Consensus 14 p~~tlfVgnLp~~~te~~L~~~F~~~G~I-~~v~i~-~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~---~g~~i~ 88 (213)
T 4f02_A 14 PMASLYVGDLHPDVTEAMLYEKFSPAGPI-LSIRVC-RDMITRRSLGYAYVNFQQPADAERALDTMNFDVI---KGKPVR 88 (213)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCE-EEEEEE-ECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEE---TTEECE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhhCCE-EEEEEe-cccCCCCccccccceeCCHHHHHHHHHHhhhhhc---CCcccc
Confidence 45789999999999999999999886643 344443 3344567889999999999999999999999877 999987
Q ss_pred eccCCCCCC----CCCCccccceeh
Q 017670 282 GSIGTPCFT----GKQSKFVGHLAL 302 (368)
Q Consensus 282 ~S~g~~~~p----~k~s~f~GHl~i 302 (368)
......... ....-|+|+|.-
T Consensus 89 ~~~~~~~~~~~~~~~~~l~v~nl~~ 113 (213)
T 4f02_A 89 IMWSQRDPSLRKSGVGNIFIKNLDK 113 (213)
T ss_dssp EEECCCCTHHHHHCTTEEEEESCCT
T ss_pred cccccccccccccccccceECCccc
Confidence 665543222 112346666554
No 182
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=98.33 E-value=2.5e-07 Score=70.51 Aligned_cols=78 Identities=15% Similarity=0.090 Sum_probs=61.2
Q ss_pred hcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCcee
Q 017670 201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 280 (368)
Q Consensus 201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL 280 (368)
...+.|||.||.+.+|.+||+++|...+.. ..++++... +..+.|.|||.|.+.++|+.||. +..-| +|++|
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i-~~v~i~~~~--~g~~~g~afV~f~~~~~a~~Ai~--~~~~~---~g~~l 78 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSV-KEVKIITDR--TGVSKGYGFVSFYNDVDVQKIVE--SQINF---HGKKL 78 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCE-EEEEEEECT--TSCEEEEEEEEESSCCCHHHHTT--CCCEE---TTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCe-EEEEEEECC--CCCccceEEEEECCHHHHHHHHh--CCCeE---CCEEE
Confidence 456899999999999999999999776543 444444433 56778999999999999999999 55555 89988
Q ss_pred eeccCC
Q 017670 281 LGSIGT 286 (368)
Q Consensus 281 ~~S~g~ 286 (368)
......
T Consensus 79 ~v~~a~ 84 (102)
T 2xs2_A 79 KLGPAI 84 (102)
T ss_dssp EEEEEE
T ss_pred EEEECC
Confidence 755444
No 183
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=98.32 E-value=9.7e-07 Score=71.34 Aligned_cols=77 Identities=17% Similarity=0.096 Sum_probs=62.9
Q ss_pred HhcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCce
Q 017670 200 HEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRP 279 (368)
Q Consensus 200 ~E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRP 279 (368)
...++.|||.|| .+|.+||+++|...+.. ..++++ .+-|.|||.|.+.++|..||..||+.-| +||+
T Consensus 36 ~~~~~~lfVgnl--~~te~~L~~~F~~~G~I-~~v~i~-------~~kg~aFV~f~~~~~A~~Ai~~lng~~~---~g~~ 102 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNI-IDLSMD-------PPRNCAFVTYEKMESADQAVAELNGTQV---ESVQ 102 (121)
T ss_dssp CCCCCEEEEECS--SCCHHHHHHHHSTTCCC-SCEEEE-------TTTTEEEEECSSHHHHHHHHHHHTTCBC---SSCB
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHHccCCE-EEEEEe-------CCCCEEEEEECCHHHHHHHHHHhCCCEE---CCeE
Confidence 346899999997 59999999999876543 233332 5679999999999999999999999877 9999
Q ss_pred eeeccCCCCC
Q 017670 280 LLGSIGTPCF 289 (368)
Q Consensus 280 L~~S~g~~~~ 289 (368)
|....+.+..
T Consensus 103 l~V~~a~~~~ 112 (121)
T 2bz2_A 103 LKVNIARKQP 112 (121)
T ss_dssp CEEEECCSSC
T ss_pred EEEEEeCCCC
Confidence 9988876553
No 184
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.31 E-value=2.4e-06 Score=67.13 Aligned_cols=78 Identities=14% Similarity=0.179 Sum_probs=54.7
Q ss_pred ccEEEEecCCCCCC--c-----hHHHHHHHHHhhc---cceecccCCcccCCCCCceEEEEEechHHHHHHHHhhcccee
Q 017670 203 GTLVVLENLDPSYT--S-----TVVEDLVWHAFKE---NCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCL 272 (368)
Q Consensus 203 GtlV~LqNLDps~t--s-----~dVedLi~~a~ke---~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL 272 (368)
.++|+|.||-.... . .++++-|++.|.. -..+.| ++..+-|.|||.|.+.++|..||..||...+
T Consensus 15 s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-----~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~ 89 (112)
T 2dit_A 15 ERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-----FDRHPDGVASVSFRDPEEADYCIQTLDGRWF 89 (112)
T ss_dssp CCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-----ETTCTTCEEEEECSCHHHHHHHHHHSTTCEE
T ss_pred ceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-----ecCCCCEEEEEEECCHHHHHHHHHHcCCCEE
Confidence 67899999932221 0 1244455555443 122222 2334689999999999999999999999987
Q ss_pred eecCCceeeeccCCCC
Q 017670 273 LLSNGRPLLGSIGTPC 288 (368)
Q Consensus 273 ~ls~GRPL~~S~g~~~ 288 (368)
+||+|......+.
T Consensus 90 ---~gr~l~v~~a~~~ 102 (112)
T 2dit_A 90 ---GGRQITAQAWDGT 102 (112)
T ss_dssp ---TTEECEEEECCSC
T ss_pred ---CCcEEEEEEeCCC
Confidence 9999999887664
No 185
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=98.30 E-value=9.1e-07 Score=69.98 Aligned_cols=73 Identities=16% Similarity=0.172 Sum_probs=58.7
Q ss_pred cccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCce
Q 017670 202 HGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRP 279 (368)
Q Consensus 202 ~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRP 279 (368)
.++.|+|.||.+.+|.+||+++|...+. -..++++. ...++.+.|.|||-|.+.++|..|+..||+..| +||.
T Consensus 87 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~-i~~~~i~~-~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~---~g~~ 159 (167)
T 1fxl_A 87 RDANLYVSGLPKTMTQKELEQLFSQYGR-IITSRILV-DQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKP---SGAT 159 (167)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHHGGGSC-EEEEEEEE-CTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCC---TTCS
T ss_pred CCCcEEECCCCCcCCHHHHHHHHHhcCC-EeEEEEEe-cCCCCCccceEEEEeCCHHHHHHHHHHhcCCcc---CCCc
Confidence 4678999999999999999999987654 33344432 233456789999999999999999999999977 8864
No 186
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=98.29 E-value=1.6e-06 Score=75.94 Aligned_cols=80 Identities=15% Similarity=0.203 Sum_probs=62.7
Q ss_pred HhcccEEEEecCCCCCCchHHHHHHHHHhhc---cceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecC
Q 017670 200 HEHGTLVVLENLDPSYTSTVVEDLVWHAFKE---NCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSN 276 (368)
Q Consensus 200 ~E~GtlV~LqNLDps~ts~dVedLi~~a~ke---~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~ 276 (368)
....+.|||.||.+.+|.+||++.+.+.|.. -...+++. +..+-|.|||.|.+.++|..||..||+..| +
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~----~~~~~g~afV~f~~~~~a~~A~~~l~g~~~---~ 78 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR----SLKMRGQAFVIFKEVSSATNALRSMQGFPF---Y 78 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC----CCCcceEEEEEECCHHHHHHHHHHhcCCee---C
Confidence 3457899999999999999998555554433 22333332 567789999999999999999999999777 9
Q ss_pred CceeeeccCC
Q 017670 277 GRPLLGSIGT 286 (368)
Q Consensus 277 GRPL~~S~g~ 286 (368)
||+|......
T Consensus 79 g~~l~v~~a~ 88 (282)
T 3pgw_A 79 DKPMRIQYAK 88 (282)
T ss_pred CcEEEEEEec
Confidence 9999877663
No 187
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.26 E-value=9e-07 Score=73.16 Aligned_cols=81 Identities=14% Similarity=0.024 Sum_probs=64.0
Q ss_pred hcccEEEE--ecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhcccee--eecC
Q 017670 201 EHGTLVVL--ENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCL--LLSN 276 (368)
Q Consensus 201 E~GtlV~L--qNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL--~ls~ 276 (368)
+-.+.||+ .||.+.+|.+|++++|.+-+.... +.|++ .-|.|||.|.+.++|+.||..||+.-| .+..
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~-v~i~~-------~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~ 94 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDA-LLMPP-------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQ 94 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEE-EECCT-------TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSC
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEE-EEEeC-------CCCEEEEEECCHHHHHHHHHHhCCCEEccccCC
Confidence 44678999 559999999999999999885543 44432 248999999999999999999999744 2446
Q ss_pred CceeeeccCCCCC
Q 017670 277 GRPLLGSIGTPCF 289 (368)
Q Consensus 277 GRPL~~S~g~~~~ 289 (368)
|+||+-.......
T Consensus 95 g~~l~v~~a~~~p 107 (114)
T 2cq2_A 95 KITLYLNFVEKVQ 107 (114)
T ss_dssp EEECEEEEESCCC
T ss_pred CcEEEEEecccCc
Confidence 9999988765433
No 188
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=98.26 E-value=1.9e-06 Score=75.47 Aligned_cols=75 Identities=15% Similarity=0.115 Sum_probs=61.5
Q ss_pred hcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecC-Cce
Q 017670 201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSN-GRP 279 (368)
Q Consensus 201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~-GRP 279 (368)
..++.|||.||.+.+|.+||.++|...+. -..+++++. ..|.|||.|.+.++|..||..||+..| + ||+
T Consensus 205 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~-i~~v~~~~~------~~g~afV~f~~~~~A~~A~~~l~g~~~---~~g~~ 274 (282)
T 3pgw_A 205 PPNHILFLTNLPEETNELMLSMLFNQFPG-FKEVRLVPG------RHDIAFVEFDNEVQAGAARDALQGFKI---TQNNA 274 (282)
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHhcCC-eEEEEEecC------CCcEEEEEeCCHHHHHHHHHHcCCcEe---CCCCE
Confidence 45789999999999999999999987544 334455421 148999999999999999999999877 6 999
Q ss_pred eeeccC
Q 017670 280 LLGSIG 285 (368)
Q Consensus 280 L~~S~g 285 (368)
|..+.+
T Consensus 275 l~v~~a 280 (282)
T 3pgw_A 275 MKISFA 280 (282)
T ss_pred EEEEEe
Confidence 987654
No 189
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.23 E-value=1.7e-06 Score=64.48 Aligned_cols=80 Identities=14% Similarity=0.150 Sum_probs=60.4
Q ss_pred hcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCcee
Q 017670 201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPL 280 (368)
Q Consensus 201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL 280 (368)
...+.|||.||.+.+|.+||+++|...+. -..++++. .+-|.|||.|.+.++|+.|+ ..-+.+ +|++|
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~-i~~v~i~~------~~~g~afV~f~~~~~a~~~~----~~~~~~-~g~~l 70 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGD-VMDVFIPK------PFRAFAFVTFADDQIAQSLC----GEDLII-KGISV 70 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSC-CCEEECCS------SCCSCCEEECSCHHHHHHTT----TCEEEE-TTEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCC-eeEEEEec------CCCCEEEEEECCHHHHHHHh----cCCcee-CCEEE
Confidence 45789999999999999999999987554 34444442 26799999999999998653 333333 99999
Q ss_pred eeccCCCCCCCC
Q 017670 281 LGSIGTPCFTGK 292 (368)
Q Consensus 281 ~~S~g~~~~p~k 292 (368)
..+.+.+.....
T Consensus 71 ~v~~a~~~~~~~ 82 (88)
T 1wf0_A 71 HISNAEPKHNSN 82 (88)
T ss_dssp EEECCCCCCCCC
T ss_pred EEEecCCCCCCC
Confidence 988887765543
No 190
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=98.17 E-value=2.7e-06 Score=75.11 Aligned_cols=76 Identities=20% Similarity=0.193 Sum_probs=62.6
Q ss_pred HhcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCce
Q 017670 200 HEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRP 279 (368)
Q Consensus 200 ~E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRP 279 (368)
...++.|||.||.+.+|.+||.++|...+. -..++++ ++-|.|||.|.+.++|..||..||+..| +||+
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~-i~~v~i~-------~~kg~afV~f~~~~~A~~A~~~l~g~~i---~g~~ 87 (261)
T 3sde_A 19 YTQRCRLFVGNLPTDITEEDFKRLFERYGE-PSEVFIN-------RDRGFGFIRLESRTLAEIAKAELDGTIL---KSRP 87 (261)
T ss_dssp SCGGGEEEEESCCTTCCHHHHHHHTGGGCC-CSEEEEE-------TTTTEEEEECSSHHHHHHHHHHHTTCEE---TTEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCC-EEEEEEe-------CCCcEEEEEECCHHHHHHHHHHcCCcEE---CCce
Confidence 456789999999999999999999977554 3334442 4479999999999999999999999987 9999
Q ss_pred eeeccCC
Q 017670 280 LLGSIGT 286 (368)
Q Consensus 280 L~~S~g~ 286 (368)
|......
T Consensus 88 l~v~~a~ 94 (261)
T 3sde_A 88 LRIRFAT 94 (261)
T ss_dssp CEEEECC
T ss_pred eEeeecc
Confidence 8766543
No 191
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=98.16 E-value=4.1e-06 Score=66.78 Aligned_cols=82 Identities=13% Similarity=0.044 Sum_probs=55.8
Q ss_pred cccEEEEecCC-CC-C---CchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecC
Q 017670 202 HGTLVVLENLD-PS-Y---TSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSN 276 (368)
Q Consensus 202 ~GtlV~LqNLD-ps-~---ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~ 276 (368)
..++|+|.||- |. + +.+||+++|..-| .-..++++.....+....|.|||.|.+.++|..|+..||+..+ +
T Consensus 7 ~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G-~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~---~ 82 (105)
T 2pe8_A 7 PTKVVLLRNMVGAGEVDEDLEVETKEECEKYG-KVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYF---G 82 (105)
T ss_dssp CCSEEEEESSSCSCCC---CHHHHHHHGGGGS-CEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEE---T
T ss_pred CCCEEEEEcCCChHHhhHHHHHHHHHHHHhcC-CEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEE---C
Confidence 46899999994 21 1 3344444444322 2223333221112245679999999999999999999999988 9
Q ss_pred CceeeeccCCC
Q 017670 277 GRPLLGSIGTP 287 (368)
Q Consensus 277 GRPL~~S~g~~ 287 (368)
||+|.++...+
T Consensus 83 Gr~i~v~~a~~ 93 (105)
T 2pe8_A 83 GRVVKACFYNL 93 (105)
T ss_dssp TEECEEEECCH
T ss_pred CcEEEEEEcCH
Confidence 99999887654
No 192
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=98.15 E-value=5.2e-06 Score=66.03 Aligned_cols=81 Identities=20% Similarity=0.172 Sum_probs=52.9
Q ss_pred ccEEEEecC-CCCCCch-----HHHHHHHHHhh---ccceecccCCccc--CCCCCceEEEEEechHHHHHHHHhhccce
Q 017670 203 GTLVVLENL-DPSYTST-----VVEDLVWHAFK---ENCSAKMIPRVAF--ASPYFGQSFVIFKTREVAELVVTKLEEGC 271 (368)
Q Consensus 203 GtlV~LqNL-Dps~ts~-----dVedLi~~a~k---e~c~AkmI~~~~y--s~p~sG~A~VIF~treaAdsAi~Kln~~c 271 (368)
-++|.|.|+ +|.--.+ |+++=+++.|. .-..++ |++..- ..+..|.|||-|.+.++|..|+..||+..
T Consensus 5 s~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~-i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 5 TEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIE-IPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEE-CCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEE-EeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 368999997 3322111 12222333322 222332 333332 23678999999999999999999999998
Q ss_pred eeecCCceeeeccCCC
Q 017670 272 LLLSNGRPLLGSIGTP 287 (368)
Q Consensus 272 L~ls~GRPL~~S~g~~ 287 (368)
+ +||+|.++...+
T Consensus 84 f---~GR~i~v~~~~~ 96 (105)
T 3v4m_A 84 F---ANRVVVTKYCDP 96 (105)
T ss_dssp E---TTEECEEEEECH
T ss_pred e---CCCEEEEEEeCH
Confidence 8 999999887543
No 193
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=98.11 E-value=5.4e-06 Score=72.69 Aligned_cols=78 Identities=12% Similarity=-0.017 Sum_probs=61.0
Q ss_pred cEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCceeeec
Q 017670 204 TLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLLGS 283 (368)
Q Consensus 204 tlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL~~S 283 (368)
..|||.||.+.+|.+||+++|..-+... .++++ ...+-|.|||.|.+.++|+.|+..||+..| ..+||+|.-.
T Consensus 47 l~l~VgNL~~~vted~L~~~Fs~fG~V~-~V~i~-----~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i-~g~g~~L~V~ 119 (164)
T 1sjr_A 47 LRIIVENLFYPVTLDVLHQIFSKFGTVL-KIITF-----TKNNQFQALLQYADPVSAQHAKLSLDGQNI-YNACCTLRID 119 (164)
T ss_dssp EEEEECSCCSCCCHHHHHHHHHHHSCEE-EEEEE-----ESSSCEEEEEEESCHHHHHHHHHHSTTBCS-SSSCSCEEEE
T ss_pred EEEEEeCcCCCCCHHHHHHHHHhcCCEE-EEEEE-----eCCCCCEEEEEECCHHHHHHHHHHhCCCEe-cCCCcEEEEE
Confidence 4689999999999999999998876643 23332 233467999999999999999999999877 2234998876
Q ss_pred cCCCC
Q 017670 284 IGTPC 288 (368)
Q Consensus 284 ~g~~~ 288 (368)
...+.
T Consensus 120 ~Ak~~ 124 (164)
T 1sjr_A 120 FSKLT 124 (164)
T ss_dssp ECSSS
T ss_pred EecCC
Confidence 66544
No 194
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.09 E-value=7.2e-06 Score=68.15 Aligned_cols=73 Identities=19% Similarity=0.111 Sum_probs=58.1
Q ss_pred EEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCc-eEEEEEechHHHHHHHHhhccceeeecCC--ceee
Q 017670 205 LVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFG-QSFVIFKTREVAELVVTKLEEGCLLLSNG--RPLL 281 (368)
Q Consensus 205 lV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG-~A~VIF~treaAdsAi~Kln~~cL~ls~G--RPL~ 281 (368)
.|||.||.+.+|.+++++||..-+.. ..++|+.+ .| +|||.|.+.++|..|+..||+.-| +| |+|.
T Consensus 27 ~l~V~NL~~~vt~~~L~~~Fs~yG~V-~~v~i~~~-------~Gf~aFVef~~~~~A~~A~~~LnG~~i---~g~~~~l~ 95 (124)
T 2e5i_A 27 LLSIQNPLYPITVDVLYTVCNPVGKV-QRIVIFKR-------NGIQAMVEFESVLCAQKAKAALNGADI---YAGCCTLK 95 (124)
T ss_dssp EEEEESCCSCCCHHHHHHHHTTTSCE-EEEEEEES-------SSEEEEEEESSHHHHHHHHHHHTTCCC---BTTBSEEE
T ss_pred EEEEcCcCCCCCHHHHHHHHHhcCCE-EEEEEEeC-------CCCEEEEEECCHHHHHHHHHHhCCCEe---cCCCeEEE
Confidence 36899999999999999999976654 33444432 38 699999999999999999999987 66 6887
Q ss_pred eccCCCC
Q 017670 282 GSIGTPC 288 (368)
Q Consensus 282 ~S~g~~~ 288 (368)
-..+.+.
T Consensus 96 V~~Ak~~ 102 (124)
T 2e5i_A 96 IEYARPT 102 (124)
T ss_dssp EECCSCS
T ss_pred EEEecCC
Confidence 7666443
No 195
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=98.07 E-value=9.9e-06 Score=61.74 Aligned_cols=80 Identities=19% Similarity=0.195 Sum_probs=56.9
Q ss_pred HHHHhcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecC
Q 017670 197 RVAHEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSN 276 (368)
Q Consensus 197 r~A~E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~ 276 (368)
..+...++.|||.||.+..|.+||+++|...+. -..++++. + +-|.|||.|.+.++|+. +++.-+. -+
T Consensus 5 ~~~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~-i~~v~i~~----~--srGfaFV~F~~~~~A~~----~~~~~~~-~~ 72 (89)
T 3d2w_A 5 HHHHHHGSKVFVGRCTEDMTAEELQQFFCQYGE-VVDVFIPK----P--FRAFAFVTFADDKVAQS----LCGEDLI-IK 72 (89)
T ss_dssp ------CCEEEEESCCTTCCHHHHHHHHTTTSC-EEEEECCS----S--CCSEEEEEESCHHHHHH----HTTCEEE-ET
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHhccCC-EEEEEEee----C--CCCEEEEEECCHHHHHH----HcCCCcc-cC
Confidence 445678899999999999999999999988654 33444443 1 56999999999999983 5555443 38
Q ss_pred CceeeeccCCCC
Q 017670 277 GRPLLGSIGTPC 288 (368)
Q Consensus 277 GRPL~~S~g~~~ 288 (368)
||+|..+.+.+.
T Consensus 73 g~~v~v~~a~~k 84 (89)
T 3d2w_A 73 GISVHISNAEPK 84 (89)
T ss_dssp TEEEEEEECC--
T ss_pred CEEEEEEEcCCC
Confidence 999998877654
No 196
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=98.00 E-value=8.8e-06 Score=70.47 Aligned_cols=80 Identities=15% Similarity=0.135 Sum_probs=62.2
Q ss_pred HHhcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCc
Q 017670 199 AHEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGR 278 (368)
Q Consensus 199 A~E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GR 278 (368)
....++.||+.||.+..|.++|+++|...+.. ..++|+... +..+.|.|||.|.+.++|..||..++. -+ +||
T Consensus 105 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v-~~v~i~~~~--~~~~kG~aFVeF~~~e~A~~A~~~~~~-~~---~Gr 177 (193)
T 2voo_A 105 NDVKNRSVYIKGFPTDATLDDIKEWLEDKGQV-LNIQMRRTL--HKAFKGSIFVVFDSIESAKKFVETPGQ-KY---KET 177 (193)
T ss_dssp HHHHHTEEEEECCCTTCCHHHHHHHHTTSCCE-EEEEEEECT--TCCEEEEEEEEESSHHHHHHHHHCTTC-EE---TTE
T ss_pred hccccCEEEecCCCCcCCHHHHHHHHhcCCCE-EEEEEEECC--CCCcccEEEEEECCHHHHHHHHHhCCC-eE---CCE
Confidence 34567899999999999999999999886653 344444322 366789999999999999999987753 34 999
Q ss_pred eeeeccC
Q 017670 279 PLLGSIG 285 (368)
Q Consensus 279 PL~~S~g 285 (368)
+|.....
T Consensus 178 ~l~V~~~ 184 (193)
T 2voo_A 178 DLLILFK 184 (193)
T ss_dssp ECEEEET
T ss_pred EEEEEEh
Confidence 9986543
No 197
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=97.84 E-value=1.4e-05 Score=73.44 Aligned_cols=80 Identities=16% Similarity=0.174 Sum_probs=64.1
Q ss_pred HhcccEEEEecCCCCC---------CchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccc
Q 017670 200 HEHGTLVVLENLDPSY---------TSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEG 270 (368)
Q Consensus 200 ~E~GtlV~LqNLDps~---------ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~ 270 (368)
....+.|||.||.+.+ |.++|+++|.+-+ +--.+++++ +-|.|||.|.++++|+.|+..|++.
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG-~I~~v~v~~-------~kG~AFV~F~~~~~Ae~A~~am~g~ 202 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLG-DIDRIRYVE-------SKNCGFVKFKYQANAEFAKEAMSNQ 202 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTS-CEEEEEEEG-------GGTEEEEEESSHHHHHHHHHHHTTC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccC-CEEEEEEEC-------CCCEEEEEeCCHHHHHHHHHHhCCC
Confidence 4578999999999998 6788888887644 444556653 4699999999999999999999998
Q ss_pred eeeec---------CCceeeeccCCC
Q 017670 271 CLLLS---------NGRPLLGSIGTP 287 (368)
Q Consensus 271 cL~ls---------~GRPL~~S~g~~ 287 (368)
.|+++ +||+|....+..
T Consensus 203 ~l~~~~~~e~~~~~~gr~L~V~wA~~ 228 (240)
T 3u1l_A 203 TLLLPSDKEWDDRREGTGLLVKWANE 228 (240)
T ss_dssp CCCCTTSTTGGGGGGSCCCEEEECC-
T ss_pred EEeccccccccccCCCCEEEEEEccC
Confidence 87542 799999877753
No 198
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=97.82 E-value=2.3e-05 Score=64.10 Aligned_cols=82 Identities=18% Similarity=0.207 Sum_probs=55.5
Q ss_pred cccEEEEecC-CCCCCchHHHHHHHHHhhc---cceecccCCcccC----CCCCceEEEEEechHHHHHHHHhhccceee
Q 017670 202 HGTLVVLENL-DPSYTSTVVEDLVWHAFKE---NCSAKMIPRVAFA----SPYFGQSFVIFKTREVAELVVTKLEEGCLL 273 (368)
Q Consensus 202 ~GtlV~LqNL-Dps~ts~dVedLi~~a~ke---~c~AkmI~~~~ys----~p~sG~A~VIF~treaAdsAi~Kln~~cL~ 273 (368)
..++|+|.|+ +|.=-.+||++=|++.|.. -..++ |+..... .+..|.|||.|.+.++|..|+..||+..+
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~-I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f- 96 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVI-IYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWF- 96 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEE-EEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEE-
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEE-EeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEE-
Confidence 5789999998 2221123456555555543 22232 2222221 23348999999999999999999999988
Q ss_pred ecCCceeeeccCCC
Q 017670 274 LSNGRPLLGSIGTP 287 (368)
Q Consensus 274 ls~GRPL~~S~g~~ 287 (368)
+||+|.++....
T Consensus 97 --~GR~i~v~~~~~ 108 (118)
T 3ue2_A 97 --AGRKVVAEVYDQ 108 (118)
T ss_dssp --TTEECEEEEECH
T ss_pred --CCcEEEEEEcCh
Confidence 999999887544
No 199
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=97.81 E-value=2.2e-05 Score=66.31 Aligned_cols=77 Identities=12% Similarity=-0.017 Sum_probs=58.5
Q ss_pred cccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCC--ce
Q 017670 202 HGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNG--RP 279 (368)
Q Consensus 202 ~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~G--RP 279 (368)
.=..|||.||.+.+|.+++++||..-+.. ..++|+.+ +.-++|||.|.+.++|..|+..||..-| +| ++
T Consensus 27 ~VL~I~V~NL~~~vte~~L~~lFs~yG~V-~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i---~g~~~~ 97 (130)
T 3zzy_A 27 PVLRIIVENLFYPVTLDVLHQIFSKFGTV-LKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNI---YNACCT 97 (130)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTTSSCE-EEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEE---ETTEEE
T ss_pred ceEEEEECCCCCCCCHHHHHHHHhCcCCE-EEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCee---cCCCcE
Confidence 33567799999999999999999876654 33455432 2223699999999999999999999887 55 77
Q ss_pred eeeccCCC
Q 017670 280 LLGSIGTP 287 (368)
Q Consensus 280 L~~S~g~~ 287 (368)
|--....+
T Consensus 98 LrI~~ak~ 105 (130)
T 3zzy_A 98 LRIDFSKL 105 (130)
T ss_dssp EEEEECSC
T ss_pred EEEEecCC
Confidence 76555543
No 200
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=97.65 E-value=0.00012 Score=57.98 Aligned_cols=38 Identities=29% Similarity=0.525 Sum_probs=34.3
Q ss_pred CCCCceEEEEEechHHHHHHHHhhccceeeecCCceeeecc
Q 017670 244 SPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLLGSI 284 (368)
Q Consensus 244 ~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL~~S~ 284 (368)
....|.|||.|.+.++|..|+..||+..+ +||+|.+..
T Consensus 65 ~~~~G~~fV~f~~~~~A~~A~~~lng~~~---~Gr~i~v~~ 102 (104)
T 1jmt_A 65 DHLVGNVYVKFRREEDAEKAVIDLNNRWF---NGQPIHAEL 102 (104)
T ss_dssp SSSEEEEEEEESCHHHHHHHHHHHTTCEE---TTEECCEEE
T ss_pred CCccEEEEEEECCHHHHHHHHHHHCCCEE---CCEEEEEEE
Confidence 45689999999999999999999999988 999998654
No 201
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.59 E-value=6.3e-05 Score=63.21 Aligned_cols=73 Identities=14% Similarity=0.070 Sum_probs=54.8
Q ss_pred HhcccEEEEecCCCC-CCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEec-hHHHHHHHHhhccceeeecCC
Q 017670 200 HEHGTLVVLENLDPS-YTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKT-REVAELVVTKLEEGCLLLSNG 277 (368)
Q Consensus 200 ~E~GtlV~LqNLDps-~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~t-reaAdsAi~Kln~~cL~ls~G 277 (368)
+..|.+|||.||.+. .+-+||.++|.+. .+--++.++. -.-.|||-|.+ .++|..|+.+||++-+.+ +|
T Consensus 15 ~~~G~il~v~~l~~~~~sredLke~F~~~-G~V~~Vd~~~-------g~~tgfVrf~~~~~~A~~av~~ln~~~~~i-~g 85 (121)
T 1owx_A 15 EKIGCLLKFSGDLDDQTCREDLHILFSNH-GEIKWIDFVR-------GAKEGIILFKEKAKEALGKAKDANNGNLQL-RN 85 (121)
T ss_dssp CCCCCEEEEEESCCSSCCHHHHHHHTCSS-CCEEEEECCT-------TCSEEEEEESSCHHHHHHHHHHTTTSCBCT-TS
T ss_pred ccCCeEEEEecCCCCcCCHHHHHHHHHhc-CCEEEEEEec-------CCCEEEEEECCChHHHHHHHHHhhcCCcEE-eC
Confidence 568999999999999 9989999988763 3322222221 22259999999 799999999999998877 44
Q ss_pred ceee
Q 017670 278 RPLL 281 (368)
Q Consensus 278 RPL~ 281 (368)
..+.
T Consensus 86 ~~~~ 89 (121)
T 1owx_A 86 KEVT 89 (121)
T ss_dssp SSEE
T ss_pred cEEE
Confidence 4443
No 202
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=97.55 E-value=0.00018 Score=58.68 Aligned_cols=75 Identities=16% Similarity=0.124 Sum_probs=50.6
Q ss_pred ccEEEEecCCCCCC------chHHHHHHHHHhhc---cceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceee
Q 017670 203 GTLVVLENLDPSYT------STVVEDLVWHAFKE---NCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLL 273 (368)
Q Consensus 203 GtlV~LqNLDps~t------s~dVedLi~~a~ke---~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ 273 (368)
.++|+|.|+=-.-. -.||++=|++.|.. -..+++ ++ +..-|.|||-|.+.++|..|+..||+..+
T Consensus 7 s~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i-~~----~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f- 80 (114)
T 3s6e_A 7 TQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYV-DK----NSAQGNVYVKCPSIAAAIAAVNALHGRWF- 80 (114)
T ss_dssp CSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEE-CT----TCTTCCEEEECSSHHHHHHHHHHHTTCEE-
T ss_pred CcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEE-ec----CCCcEEEEEEECCHHHHHHHHHHhCCCEE-
Confidence 57899999732221 23444444444432 112211 22 12479999999999999999999999988
Q ss_pred ecCCceeeeccC
Q 017670 274 LSNGRPLLGSIG 285 (368)
Q Consensus 274 ls~GRPL~~S~g 285 (368)
+||+|.++..
T Consensus 81 --~GR~i~v~~~ 90 (114)
T 3s6e_A 81 --AGKMITAAYV 90 (114)
T ss_dssp --TTEECEEEEE
T ss_pred --CCEEEEEEEE
Confidence 9999997764
No 203
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=97.51 E-value=0.00014 Score=69.95 Aligned_cols=78 Identities=15% Similarity=0.083 Sum_probs=63.0
Q ss_pred HhcccEEEEec--CCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCC
Q 017670 200 HEHGTLVVLEN--LDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNG 277 (368)
Q Consensus 200 ~E~GtlV~LqN--LDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~G 277 (368)
-+-...|||.| |.+++|.+||+++|.+-+.-. .++|.+ .-|.|||.|.+.++|..||..||+.-++-..|
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~-~v~~~~-------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g 86 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVD-ALLMPP-------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLG 86 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEE-EEECCT-------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTS
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeE-EEEEeC-------CCCEEEEEECCHHHHHHHHHHhCCCccccccC
Confidence 45567899999 578999999999999976553 354433 34999999999999999999999998865557
Q ss_pred c--eeeeccC
Q 017670 278 R--PLLGSIG 285 (368)
Q Consensus 278 R--PL~~S~g 285 (368)
| ||+-++.
T Consensus 87 ~~~~ly~~~~ 96 (345)
T 3tht_A 87 QKITLYLNFV 96 (345)
T ss_dssp CEEECEEEEC
T ss_pred CceEEEEEEe
Confidence 7 8877765
No 204
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=97.34 E-value=0.00026 Score=61.54 Aligned_cols=75 Identities=7% Similarity=0.012 Sum_probs=57.5
Q ss_pred cEEEEecC----CCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEec-----hHH---HHHHHH--hhcc
Q 017670 204 TLVVLENL----DPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKT-----REV---AELVVT--KLEE 269 (368)
Q Consensus 204 tlV~LqNL----Dps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~t-----rea---AdsAi~--Kln~ 269 (368)
+-||+.|| +|..|..+|.++|.. |++--.+++|.. +.+..+-|-|||.|.. -++ |..||. .+|+
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~-fGeV~~~~li~D-p~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng 80 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKK-YGEISHFEAFND-PNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSG 80 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHT-TSCCSEEEEEEC-TTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTC
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHh-cCCeEEEEEEec-CCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcC
Confidence 78999999 999999999999996 446555544432 2234566899999995 333 899999 7888
Q ss_pred ceeeecCCceeeec
Q 017670 270 GCLLLSNGRPLLGS 283 (368)
Q Consensus 270 ~cL~ls~GRPL~~S 283 (368)
.+| +||+|-..
T Consensus 81 ~~I---~Gr~irV~ 91 (136)
T 2j8a_A 81 CFI---MGFKFEVI 91 (136)
T ss_dssp EEE---TTEEEEEE
T ss_pred Cee---cCcEEEEE
Confidence 888 99999854
No 205
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.33 E-value=0.00056 Score=54.52 Aligned_cols=68 Identities=24% Similarity=0.098 Sum_probs=53.5
Q ss_pred CCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCceeeeccCCCCCCCC
Q 017670 213 PSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLLGSIGTPCFTGK 292 (368)
Q Consensus 213 ps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL~~S~g~~~~p~k 292 (368)
+.+|.+||+++|.+.+. -..++|+ ..+-|.|||.|.+.++|+.||..++. + .||||....+.+..+.+
T Consensus 27 ~~~te~~L~~~F~~~G~-V~~v~i~------~~~rGfaFVeF~~~~~A~~Ai~~~~~--~---~g~~l~V~~a~~~~~~~ 94 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGE-VLNLVLS------SKKPGTAVVEFATVKAAELAVQNEVG--L---VDNPLKISWLEGQPQDA 94 (100)
T ss_dssp CSCCHHHHHHHHHTTSC-EEEEEEE------SSSSSEEEEEESCHHHHHHHHHTCCB--C---SSSBCEEECSSCCCCCC
T ss_pred CCCCHHHHHHHHHhcCC-EEEEEEc------cCCCCEEEEEECCHHHHHHHHHhcCC--C---CCCeEEEEEccCCCCCC
Confidence 67899999999988665 3445554 35679999999999999999999544 2 69999988877665444
No 206
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=95.65 E-value=0.015 Score=49.81 Aligned_cols=82 Identities=17% Similarity=0.207 Sum_probs=53.9
Q ss_pred cccEEEEecC-CCCCCchHHHHHHHHHhhc---cceecccCCcccCC----CCCceEEEEEechHHHHHHHHhhccceee
Q 017670 202 HGTLVVLENL-DPSYTSTVVEDLVWHAFKE---NCSAKMIPRVAFAS----PYFGQSFVIFKTREVAELVVTKLEEGCLL 273 (368)
Q Consensus 202 ~GtlV~LqNL-Dps~ts~dVedLi~~a~ke---~c~AkmI~~~~ys~----p~sG~A~VIF~treaAdsAi~Kln~~cL~ 273 (368)
..+++.|.|+ ++.-..+|+++-+++.|.. --.++++ +..-.. +..|.+||.|.+-++|..||..||+..+
T Consensus 123 ~s~v~~l~n~v~~~e~~~e~~~dl~~e~~~~G~v~~~~v~-~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~- 200 (222)
T 3dxb_A 123 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIY-QEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWF- 200 (222)
T ss_dssp BCSEEEEESSCCGGGCCTTHHHHHHHHHTTTSCEEEEEEE-EEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBS-
T ss_pred ccccchhhcCCCHHHHHHHHHHHHHHHHHccCCeEEEEEe-cCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceE-
Confidence 4567777765 3333334455444443332 2233332 222122 5668999999999999999999999988
Q ss_pred ecCCceeeeccCCC
Q 017670 274 LSNGRPLLGSIGTP 287 (368)
Q Consensus 274 ls~GRPL~~S~g~~ 287 (368)
+||+|.++....
T Consensus 201 --~gr~i~~~~~~~ 212 (222)
T 3dxb_A 201 --AGRKVVAEVYDQ 212 (222)
T ss_dssp --SSSBCEEEECCH
T ss_pred --CCeEEEEEEcCH
Confidence 999999887543
No 207
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.83 E-value=0.062 Score=43.65 Aligned_cols=57 Identities=16% Similarity=0.105 Sum_probs=44.2
Q ss_pred hHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCceeeeccCCCC
Q 017670 218 TVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLLGSIGTPC 288 (368)
Q Consensus 218 ~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL~~S~g~~~ 288 (368)
.++.+.|.+.+ +-..+|+|- +++||.|...+.|..||. ||...| +||.|.=...+|-
T Consensus 30 ~~L~~~F~~~G-~Vi~vr~~~---------d~~fVtF~d~~sAlaAi~-mnG~~v---~Gr~LkV~lkt~d 86 (91)
T 2dnr_A 30 DELLQQFASFG-EVILIRFVE---------DKMWVTFLEGSSALNVLS-LNGKEL---LNRTITIALKSPS 86 (91)
T ss_dssp HHHHHHHHTTC-CEEEEEECS---------SSEEEEESSHHHHHHGGG-GTTCEE---TTEEEEEEECCCS
T ss_pred HHHHHHHHhCC-CeEEEEEec---------CCEEEEECChHHHHHHHh-cCCeEe---CCeEEEEEeCCCC
Confidence 45566666633 666676665 459999999999999998 999998 9999986665553
No 208
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=93.94 E-value=0.16 Score=41.68 Aligned_cols=64 Identities=16% Similarity=0.067 Sum_probs=46.7
Q ss_pred EEEEecCCCC-----CCc----hHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeec
Q 017670 205 LVVLENLDPS-----YTS----TVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLS 275 (368)
Q Consensus 205 lV~LqNLDps-----~ts----~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls 275 (368)
.|+++.+.++ +-. .+|.+.|.+.+ +-..+|+|.-. +||.|...+.|..||+ ||...+
T Consensus 17 Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G-~Vilvr~v~d~---------~fVtF~d~~sAl~AI~-ldG~~v--- 82 (95)
T 1ufw_A 17 TVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYG-TIVLVRINQGQ---------MLVTFADSHSALSVLD-VDGMKV--- 82 (95)
T ss_dssp EEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHS-CCSEEEEETTE---------EEEECSCSHHHHHHHH-GGGSEE---
T ss_pred eEEEEecCCcccccccCCHHHHHHHHHHHHHCC-CEEEEEEecCc---------EEEEEcChHHHHHHHh-cCCeee---
Confidence 3556666543 333 44666777744 55566665443 9999999999999998 999999
Q ss_pred CCceeee
Q 017670 276 NGRPLLG 282 (368)
Q Consensus 276 ~GRPL~~ 282 (368)
+||.|.=
T Consensus 83 ~Gr~L~V 89 (95)
T 1ufw_A 83 KGRAVKI 89 (95)
T ss_dssp TTEEEEE
T ss_pred CCeEEEE
Confidence 9999873
No 209
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=91.94 E-value=0.31 Score=39.16 Aligned_cols=65 Identities=15% Similarity=0.262 Sum_probs=48.9
Q ss_pred cEEEEecCCCCCCchHHHHHHHHHhhc----cceecccCCcccCCCCCceEEEEEechHHHHHHHHhhcccee
Q 017670 204 TLVVLENLDPSYTSTVVEDLVWHAFKE----NCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCL 272 (368)
Q Consensus 204 tlV~LqNLDps~ts~dVedLi~~a~ke----~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL 272 (368)
|.|.|.+|-|++|.++..+.|...... =|-++ .+...+-+.+|++.|++.+++.....++++...
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~----~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F 70 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSND----TSLYPHMYARAYINFKNQEDIILFRDRFDGYVF 70 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESC----CSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCc----cCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEE
Confidence 689999999999999999888764422 11111 112235668999999999999999999987754
No 210
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=88.05 E-value=0.47 Score=39.51 Aligned_cols=54 Identities=11% Similarity=0.079 Sum_probs=43.7
Q ss_pred cEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhc
Q 017670 204 TLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLE 268 (368)
Q Consensus 204 tlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln 268 (368)
-+++| ++-+.+.-.||+.||+.-+ ....+- -+-.+|||+|.+++.|..|+.-++
T Consensus 17 HVf~l-~FP~ewKt~DI~~lFs~fg--gv~I~W--------idDTsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 17 HVLHV-TFPKEWKTSDLYQLFSAFG--NIQISW--------IDDTSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp SEEEE-ECCTTCCHHHHHHHHTTTC--SCCCEE--------EETTEEEEECSCHHHHHHHHHHHH
T ss_pred eEEEE-eCChhhhhHHHHHHhhccC--CEEEEE--------EcCCeEEEEecCHHHHHHHHHhcc
Confidence 36788 9999999999999998764 333322 446799999999999999999663
No 211
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=86.28 E-value=1.8 Score=35.92 Aligned_cols=75 Identities=12% Similarity=0.058 Sum_probs=57.7
Q ss_pred cEEEEecCCCCC-CchHH----HHHHHHHhhccceecccCCcccCC-CCCceEEEEEechHHHHHHHHhhccceeeecCC
Q 017670 204 TLVVLENLDPSY-TSTVV----EDLVWHAFKENCSAKMIPRVAFAS-PYFGQSFVIFKTREVAELVVTKLEEGCLLLSNG 277 (368)
Q Consensus 204 tlV~LqNLDps~-ts~dV----edLi~~a~ke~c~AkmI~~~~ys~-p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~G 277 (368)
+-++|.|||+.+ ++++. |+||+..... .+|+- +...+..|.|.+.++|..|=-.|.+.-+ .|
T Consensus 6 ntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~---------~tF~~lkSFRRirv~F~~~~~A~~AR~~Lh~~~f---~g 73 (104)
T 1wey_A 6 SGLIACVANDDVFSESETRAKFESLFRTYDKD---------TTFQYFKSFKRVRINFSNPLSAADARLRLHKTEF---LG 73 (104)
T ss_dssp CEEEEECCCGGGGSTTTHHHHHHHHHHTTCSS---------CEEEEETTTTEEEEECSSTTHHHHHHHTSTTSEE---TT
T ss_pred ceEEEecCCHHHcCCHHHHHHHHHHHHhhCcC---------cceeecCcceEEEEEeCChHHHHHHHHHhcccee---cC
Confidence 568899999865 66655 5666654332 33433 6778999999999999999999999988 89
Q ss_pred ceeeeccCCCCCC
Q 017670 278 RPLLGSIGTPCFT 290 (368)
Q Consensus 278 RPL~~S~g~~~~p 290 (368)
++|-+=+|-+.++
T Consensus 74 ~~~r~YFgq~~~~ 86 (104)
T 1wey_A 74 KEMKLYFAQTLHI 86 (104)
T ss_dssp EECEEECCCCSSC
T ss_pred ceeEEEecCCCCC
Confidence 9998888875554
No 212
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=85.46 E-value=0.67 Score=38.63 Aligned_cols=56 Identities=13% Similarity=0.100 Sum_probs=44.8
Q ss_pred cEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccc
Q 017670 204 TLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEG 270 (368)
Q Consensus 204 tlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~ 270 (368)
-+++| ++-+.+.-.||+.||+.-+ ....+-| +-.+|||+|.+++.|..|+.-+...
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fg--gv~I~Wi--------dDTsAlvvf~~~~~a~~al~~i~~~ 62 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFG--NIQISWI--------DDTSAFVSLSQPEQVKIAVNTSKYA 62 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSE--EEEEEEE--------ETTEEEEEEEEECHHHHHHHHHTTC
T ss_pred eEEEE-eCChhhhhHHHHHHHhccC--CEEEEEE--------cCCeEEEEecCHHHHHHHHHhcccC
Confidence 36778 9999999999999998765 4444333 4678999999999999999976433
No 213
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=82.75 E-value=2 Score=35.88 Aligned_cols=66 Identities=17% Similarity=0.127 Sum_probs=46.1
Q ss_pred hcccEEEEecCCCCCCchHHHHHHHH---HhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHh----hccceee
Q 017670 201 EHGTLVVLENLDPSYTSTVVEDLVWH---AFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTK----LEEGCLL 273 (368)
Q Consensus 201 E~GtlV~LqNLDps~ts~dVedLi~~---a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~K----ln~~cL~ 273 (368)
..|..|.++||.|....+-++-.|.. -+.--|.- +.|.. +.|.|.|...++|+.+|++ |++.-|.
T Consensus 6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~-----v~~~~---~~AvItF~d~~va~rVL~k~~H~L~~~~Ls 77 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLS-----WQRLG---CGGVLTFREPADAERVLAQADHELHGAQLS 77 (104)
T ss_dssp CCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEE-----EEEET---TEEEEEESSHHHHHHHHTCSCCBSSSSBCE
T ss_pred cCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeE-----EEEcC---CcEEEEEcChHHHHHHhcCCcceecCeEEE
Confidence 35789999999998865545544433 23333433 44422 8999999999999999999 6665554
Q ss_pred e
Q 017670 274 L 274 (368)
Q Consensus 274 l 274 (368)
|
T Consensus 78 V 78 (104)
T 2dhx_A 78 L 78 (104)
T ss_dssp E
T ss_pred E
Confidence 4
No 214
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=77.09 E-value=1.6 Score=35.07 Aligned_cols=26 Identities=15% Similarity=0.093 Sum_probs=23.3
Q ss_pred CCCceEEEEEechHHHHHHHHhhccc
Q 017670 245 PYFGQSFVIFKTREVAELVVTKLEEG 270 (368)
Q Consensus 245 p~sG~A~VIF~treaAdsAi~Kln~~ 270 (368)
...|.|||.|.+.++|+.|+..+++.
T Consensus 11 ~~~G~~fV~f~~~~~A~~al~~~~~~ 36 (158)
T 2kn4_A 11 TLKGETTTEAVDAATAEKVFKQYAND 36 (158)
T ss_dssp SCEEEEEEECSSHHHHHHHHHHHHHH
T ss_pred cccchhHHHHHHHHhHHHHHHhhccc
Confidence 46799999999999999999998864
No 215
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=74.83 E-value=2.3 Score=34.84 Aligned_cols=66 Identities=14% Similarity=0.268 Sum_probs=46.9
Q ss_pred ccEEEEecCCCCCCchHHHHHHHHHhhc----cceecccCCcccCCCCCceEEEEEechHHHHHHHHhhcccee
Q 017670 203 GTLVVLENLDPSYTSTVVEDLVWHAFKE----NCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCL 272 (368)
Q Consensus 203 GtlV~LqNLDps~ts~dVedLi~~a~ke----~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL 272 (368)
.-.|.|.+|-|++|.++..+.|...... -|-++ .+....-+.+|++.|++.++......++++-..
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~----~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F 78 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAAD----LSLYPHLYSRAYINFRNPDDILLFRDRFDGYIF 78 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCC----SSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCc----cCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEE
Confidence 3468999999999999988777542211 11111 111234557999999999999999999987755
No 216
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=72.85 E-value=8.9 Score=32.77 Aligned_cols=75 Identities=16% Similarity=0.256 Sum_probs=59.4
Q ss_pred hcccEEEEecCCCCCCchHHHHHHHHHhhc--cceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCc
Q 017670 201 EHGTLVVLENLDPSYTSTVVEDLVWHAFKE--NCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGR 278 (368)
Q Consensus 201 E~GtlV~LqNLDps~ts~dVedLi~~a~ke--~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GR 278 (368)
|..+.|-|=||--.++.+-|+.|+...... .-..|++=+ |-.|-|.|+|.+...|--|.=-||+.-+ +||
T Consensus 19 ~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~-----pDH~GAivef~d~~~AgKasLaL~G~ef---~gr 90 (117)
T 2l9w_A 19 ELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLV-----SDFNGAIIIFRDSKFAAKMLMILNGSQF---QGK 90 (117)
T ss_dssp TTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEE-----TTTTEEEEECSCHHHHHHHHHHHSSEEE---TTE
T ss_pred cCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEe-----cCCCceEEEEccchhhHHHHhhcCCeee---cCe
Confidence 457889999999999999999999886322 111122222 6679999999999999999999999988 899
Q ss_pred eeeec
Q 017670 279 PLLGS 283 (368)
Q Consensus 279 PL~~S 283 (368)
.|-|.
T Consensus 91 ~Lr~g 95 (117)
T 2l9w_A 91 VIRSG 95 (117)
T ss_dssp EEEEE
T ss_pred EEEec
Confidence 99764
No 217
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=68.88 E-value=2 Score=34.51 Aligned_cols=38 Identities=16% Similarity=0.107 Sum_probs=31.5
Q ss_pred CCCceEEEEEechHHHHHHHHhh-ccceeeecCCceeeeccCC
Q 017670 245 PYFGQSFVIFKTREVAELVVTKL-EEGCLLLSNGRPLLGSIGT 286 (368)
Q Consensus 245 p~sG~A~VIF~treaAdsAi~Kl-n~~cL~ls~GRPL~~S~g~ 286 (368)
...|.++|.|-+.++|+.|+..+ |+..| +| |+......
T Consensus 11 ~l~G~~~ve~~~~~~A~~a~~~~~ng~~~---~G-~~~~~~a~ 49 (150)
T 2i2y_A 11 TLKGETTTEAVDAATAEKVFKQYANDNGV---DG-EWTYDDAT 49 (150)
T ss_dssp SSCEEEEEECSSHHHHTTTHHHHHHHHTC---CC-EEEEETTT
T ss_pred cccccceeeecCHHHHHHHHHHHhcCCCC---CC-ceeccccc
Confidence 55799999999999999999999 77766 88 87765543
No 218
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=43.71 E-value=33 Score=34.23 Aligned_cols=54 Identities=15% Similarity=0.197 Sum_probs=40.1
Q ss_pred cEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhc
Q 017670 204 TLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLE 268 (368)
Q Consensus 204 tlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln 268 (368)
.++++. +.++....||+++| .+|+ ....+. -+-.+|+|+|.+++.|..+++-++
T Consensus 441 ~vl~v~-f~~~~~~~~i~~~f-s~fg-~v~V~w--------iddt~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 441 HVLHVT-FPKEWKTSDLYQLF-SAFG-NIQISW--------IDDTSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GEEEEE-CCTTCCHHHHHHHG-GGGC-CCEEEE--------CSSSEEEEECSCHHHHHHHHHHHT
T ss_pred cEEEEe-CCCCCCHHHHHHHH-HhcC-CEEEEE--------EcCCeEEEEECCHHHHHHHHHHHH
Confidence 366776 88888999999988 4443 233322 334679999999999999999884
No 219
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=38.83 E-value=79 Score=26.60 Aligned_cols=59 Identities=8% Similarity=0.089 Sum_probs=40.3
Q ss_pred CCCCchHHHHHHHHHhh--ccceecccCCcccCCCCCceEEEEEechHHHHHHHHhhccceeeecCCceeee
Q 017670 213 PSYTSTVVEDLVWHAFK--ENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVTKLEEGCLLLSNGRPLLG 282 (368)
Q Consensus 213 ps~ts~dVedLi~~a~k--e~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~Kln~~cL~ls~GRPL~~ 282 (368)
.||+.++...+++|--+ +...- .. ..+..--.+-|.++.+|..||.+ |..+| +|.=|+|
T Consensus 30 FGFp~~~~~~VL~~F~~~G~Iv~~-----~~--~~~~NWihI~Y~s~~~A~rAL~k-NG~ii---~g~~mIG 90 (119)
T 1wwh_A 30 FGFPQASASYILLQFAQYGNILKH-----VM--SNTGNWMHIRYQSKLQARKALSK-DGRIF---GESIMIG 90 (119)
T ss_dssp ECCCGGGHHHHHHHHHTTSCEEEE-----EE--CSSSSEEEEEESSHHHHHHHHTT-TTCEE---TTTEECE
T ss_pred ECCCHHHHHHHHHHHHhhCcEEEe-----cc--CCCCCeEEEEeCCHHHHHHHHHh-CCeEe---cCCEEEE
Confidence 47888887777777433 22222 11 23455788999999999999998 66655 6666774
No 220
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=32.48 E-value=54 Score=21.49 Aligned_cols=24 Identities=46% Similarity=0.574 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcc
Q 017670 343 LDCAWKKLYEQQELELKKLKVKLKS 367 (368)
Q Consensus 343 ~~~~w~~L~k~~~~El~k~~a~l~~ 367 (368)
.|.-++.|-+-|.. ||||..+|+|
T Consensus 3 adelykeledlqer-lrklrkklrs 26 (27)
T 3twe_A 3 ADELYKELEDLQER-LRKLRKKLRS 26 (27)
T ss_dssp HHHHHHHHHHHHHH-HHHHHHHHHC
T ss_pred HHHHHHHHHHHHHH-HHHHHHHhcC
Confidence 35567778888865 9999999986
No 221
>2egz_A 3-dehydroquinate dehydratase; aquifex aeolicus VF5, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TLA; 1.75A {Aquifex aeolicus} PDB: 2ysw_A
Probab=29.74 E-value=61 Score=28.72 Aligned_cols=44 Identities=9% Similarity=0.244 Sum_probs=35.1
Q ss_pred HHHHHHHhcccEEEEecCCCCCCc--hHHHHHHHHHhhccceeccc
Q 017670 194 ERIRVAHEHGTLVVLENLDPSYTS--TVVEDLVWHAFKENCSAKMI 237 (368)
Q Consensus 194 e~lr~A~E~GtlV~LqNLDps~ts--~dVedLi~~a~ke~c~AkmI 237 (368)
+-++.|.+.|+.|.+++=|..-|+ +++.+++.++.+..|.+|++
T Consensus 99 ~l~~~~~~~g~kvI~S~Hdf~~tp~~~el~~~~~~~~~~gaivKia 144 (219)
T 2egz_A 99 KLYNITKEAGKKLIISYHNFELTPPNWIIREVLREGYRYGGIPKIA 144 (219)
T ss_dssp HHHHHHHHTTCEEEEEEEESSCCCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHcCCEEEEEecCCCCCcCHHHHHHHHHHHHHcCCEEEEE
Confidence 345566889999999998877776 78889999998888877665
No 222
>4g3b_A Alpha4F3D; alpha helix, de novo designed, fluorinated protein, coiled-C NOVO protein; HET: 6FL; 1.19A {Synthetic} PDB: 4g4l_A* 3twg_A*
Probab=29.50 E-value=66 Score=20.93 Aligned_cols=24 Identities=42% Similarity=0.544 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcc
Q 017670 343 LDCAWKKLYEQQELELKKLKVKLKS 367 (368)
Q Consensus 343 ~~~~w~~L~k~~~~El~k~~a~l~~ 367 (368)
.|..++.|-+.|.. |||...+|+|
T Consensus 3 ade~ykeled~qer-lrk~rkklrs 26 (26)
T 4g3b_A 3 ADEXYKELEDXQER-LRKXRKKLRS 26 (26)
T ss_dssp HHHHHHHHHHHHHH-HHHHHHHHHC
T ss_pred hhHHHHHHHHHHHH-HHHHHHHhcC
Confidence 46678899998866 9999999875
No 223
>3oz7_A Phosphoglycerate kinase; transferase, ATP binding, glycolysi malaria parasite; 2.70A {Plasmodium falciparum} SCOP: c.86.1.1 PDB: 1ltk_A* 3oza_A
Probab=27.73 E-value=54 Score=32.93 Aligned_cols=63 Identities=17% Similarity=0.315 Sum_probs=40.6
Q ss_pred HHHHHHhccc--EEEEecC-------CCCCCchHHHHHHHHHhhccceecccCCcccCCCCCceEEEEEechHHHHHHHH
Q 017670 195 RIRVAHEHGT--LVVLENL-------DPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFGQSFVIFKTREVAELVVT 265 (368)
Q Consensus 195 ~lr~A~E~Gt--lV~LqNL-------Dps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG~A~VIF~treaAdsAi~ 265 (368)
.|+.++++|. +|+++-| ++.|+=.-|.+.+.+.++.. . .|-..-.| +.|..|+.
T Consensus 48 TI~~ll~~gak~Vil~SHlGRP~g~~~~~~SL~pva~~L~~lLg~~--V------~f~~d~~G---------~~~~~~v~ 110 (417)
T 3oz7_A 48 TINHLKKEGASKIILISHCGRPDGLRNEKYTLKPVAETLKGLLGEE--V------LFLNDCVG---------KEVEDKIN 110 (417)
T ss_dssp HHHHHHHHTCSEEEEECCCSCCTTSCCGGGCSHHHHHHHHHHHTSC--C------EEESCSSS---------HHHHHHHH
T ss_pred HHHHHHHCCCCEEEEEecCCCCCCCCCCccCHHHHHHHHHHHhCCC--c------EECCCCCC---------HHHHHHHh
Confidence 4445566664 7999987 45666677777777776532 2 22222234 57889999
Q ss_pred hhccceeee
Q 017670 266 KLEEGCLLL 274 (368)
Q Consensus 266 Kln~~cL~l 274 (368)
.|..|-++|
T Consensus 111 ~l~~G~VlL 119 (417)
T 3oz7_A 111 AAKENSVIL 119 (417)
T ss_dssp HSCTTEEEE
T ss_pred cCCCCcEEE
Confidence 998876644
No 224
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=24.98 E-value=1.7e+02 Score=23.24 Aligned_cols=68 Identities=21% Similarity=0.243 Sum_probs=50.8
Q ss_pred HHHHHHHHhcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCc--eEEEEEechHHHHHHHHhh
Q 017670 193 EERIRVAHEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFG--QSFVIFKTREVAELVVTKL 267 (368)
Q Consensus 193 Ee~lr~A~E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG--~A~VIF~treaAdsAi~Kl 267 (368)
|-+++...+.++++.+ .|+.-+.-+|...|...|+-++.. +..-+++.| +|+|-+..-..|..+-.||
T Consensus 14 EKa~~~~e~~n~~~F~--Vd~~AnK~qIK~AVe~lf~VkV~~-----VNTl~~~~~~KKA~V~L~~~~~a~dva~ki 83 (86)
T 3j21_T 14 EKAISLIEKENKLTFI--VDRRATKQDIKRAVEEIFNVKVEK-----VNTLITPRGEKKAYVKLKPEYSASEVAARL 83 (86)
T ss_dssp HHHHHHHHTSCEEEEE--ECTTCCHHHHHHHHHHHTTCCEEE-----EEEEECTTSCEEEEEEECTTSCHHHHHHHS
T ss_pred HHHHHHHHhCCEEEEE--EcCCCCHHHHHHHHHHHcCCCceE-----EEEeEcCCCceEEEEEcCCCCcHHHHHHhh
Confidence 6667766667887765 788899999999999999987766 333333445 7999998887777666665
No 225
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=20.40 E-value=2.1e+02 Score=22.65 Aligned_cols=68 Identities=16% Similarity=0.178 Sum_probs=49.7
Q ss_pred HHHHHHHHhcccEEEEecCCCCCCchHHHHHHHHHhhccceecccCCcccCCCCCc--eEEEEEechHHHHHHHHhh
Q 017670 193 EERIRVAHEHGTLVVLENLDPSYTSTVVEDLVWHAFKENCSAKMIPRVAFASPYFG--QSFVIFKTREVAELVVTKL 267 (368)
Q Consensus 193 Ee~lr~A~E~GtlV~LqNLDps~ts~dVedLi~~a~ke~c~AkmI~~~~ys~p~sG--~A~VIF~treaAdsAi~Kl 267 (368)
|-+++...+.++++.+ .|+.-+.-||...|...|+-++.. +..-+++.| +|+|-+..-..|.....||
T Consensus 13 EKa~~~~e~~n~~~F~--V~~~AnK~qIK~ave~lf~VkV~~-----VNT~~~~~~~KKA~VtL~~g~~aid~~~ki 82 (85)
T 1vq8_S 13 EKAMNDMDFQNKLQFA--VDDRASKGEVADAVEEQYDVTVEQ-----VNTQNTMDGEKKAVVRLSEDDDAQEVASRI 82 (85)
T ss_dssp HHHHHHHHHSCEEEEE--ECTTCCHHHHHHHHHHHHCCCEEE-----EEEEECTTSSEEEEEEECTTSCHHHHHTTC
T ss_pred HHHHHHHHhCCEEEEE--ECCCCCHHHHHHHHHHHhCCCceE-----EEeeecCCCceEEEEEECCCCcHHHHHHhh
Confidence 6667766667877664 789999999999999999987766 333333345 7999888777666665554
Done!