BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017671
(368 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1RLZ|A Chain A, Deoxyhypusine Synthase Holoenzyme In Its High Ionic
Strength, Low Ph Crystal Form
pdb|1ROZ|A Chain A, Deoxyhypusine Synthase Holoenzyme In Its Low Ionic
Strength, High Ph Crystal Form
pdb|1ROZ|B Chain B, Deoxyhypusine Synthase Holoenzyme In Its Low Ionic
Strength, High Ph Crystal Form
pdb|1RQD|A Chain A, Deoxyhypusine Synthase Holoenzyme In Its Low Ionic
Strength, High Ph Crystal Form With The Inhibitor Gc7
Bound In The Active Site
pdb|1RQD|B Chain B, Deoxyhypusine Synthase Holoenzyme In Its Low Ionic
Strength, High Ph Crystal Form With The Inhibitor Gc7
Bound In The Active Site
Length = 369
Score = 477 bits (1227), Expect = e-135, Method: Compositional matrix adjust.
Identities = 221/356 (62%), Positives = 282/356 (79%), Gaps = 3/356 (0%)
Query: 9 ASVHSTVFKESESLEGKGTKIEGYDFNQGVNYSQLLKSMVSTGFQASNFGDAIEVVNQML 68
A + V K S +L + T++ GYDFN+GVNY LL++ +TGFQA+NFG A++ VN M+
Sbjct: 11 AGALAAVLKHSSTLPPESTQVRGYDFNRGVNYRALLEAFGTTGFQATNFGRAVQQVNAMI 70
Query: 69 DWRLADEVIXXXXXXXXXXXXYRKSVRCKVFLGFTSNLISSGVRDTVRYLVQHHMVDVVV 128
+ +L + + R C +FLG+TSNLISSG+R+T+RYLVQH+MVDV+V
Sbjct: 71 EKKL-EPLSQDEDQHADLTQSRRPLTSCTIFLGYTSNLISSGIRETIRYLVQHNMVDVLV 129
Query: 129 TTAGGIEEDLVKCLAPTFKGDFALPGAYLRSKGLNRIGNLLVPNDNYCKFEDWIIPIFDQ 188
TTAGG+EEDL+KCLAPT+ G+F+L G LR G+NRIGNLLVPN+NYCKFEDW++PI DQ
Sbjct: 130 TTAGGVEEDLIKCLAPTYLGEFSLRGKELRENGINRIGNLLVPNENYCKFEDWLMPILDQ 189
Query: 189 MLKEQNEEEISWTPSKVIARLGKEINDESSYLYWAYKNNIPVFCPGLTDGSLGDMLYFHS 248
M+ EQN E + WTPSK+IARLGKEIN+ S YWA KN+IPVF P LTDGSLGDM++FHS
Sbjct: 190 MVMEQNTEGVKWTPSKMIARLGKEINNPESVYYWAQKNHIPVFSPALTDGSLGDMIFFHS 249
Query: 249 FRSPGLIIDIVQDIRAINGEAVHASPRKTGLIILGGGLPKHHICNANMMRNGADYAVFIN 308
+++PGL++DIV+D+R IN +A+ A + TG+IILGGG+ KHHI NAN+MRNGADYAV+IN
Sbjct: 250 YKNPGLVLDIVEDLRLINTQAIFA--KCTGMIILGGGVVKHHIANANLMRNGADYAVYIN 307
Query: 309 TAQEFDGSDSGARPDEAVSWGKIRGSAKTVKVHCDATIAFPLLVAETFASRRNKFV 364
TAQEFDGSDSGARPDEAVSWGKIR A+ VKV+ DA++ FPLLVAETFA + + F+
Sbjct: 308 TAQEFDGSDSGARPDEAVSWGKIRVDAQPVKVYADASLVFPLLVAETFAQKMDAFM 363
>pdb|1DHS|A Chain A, Crystal Structure Of The Nad Complex Of Human
Deoxyhypusine Synthase
Length = 361
Score = 477 bits (1227), Expect = e-135, Method: Compositional matrix adjust.
Identities = 221/356 (62%), Positives = 282/356 (79%), Gaps = 3/356 (0%)
Query: 9 ASVHSTVFKESESLEGKGTKIEGYDFNQGVNYSQLLKSMVSTGFQASNFGDAIEVVNQML 68
A + V K S +L + T++ GYDFN+GVNY LL++ +TGFQA+NFG A++ VN M+
Sbjct: 3 AGALAAVLKHSSTLPPESTQVRGYDFNRGVNYRALLEAFGTTGFQATNFGRAVQQVNAMI 62
Query: 69 DWRLADEVIXXXXXXXXXXXXYRKSVRCKVFLGFTSNLISSGVRDTVRYLVQHHMVDVVV 128
+ +L + + R C +FLG+TSNLISSG+R+T+RYLVQH+MVDV+V
Sbjct: 63 EKKL-EPLSQDEDQHADLTQSRRPLTSCTIFLGYTSNLISSGIRETIRYLVQHNMVDVLV 121
Query: 129 TTAGGIEEDLVKCLAPTFKGDFALPGAYLRSKGLNRIGNLLVPNDNYCKFEDWIIPIFDQ 188
TTAGG+EEDL+KCLAPT+ G+F+L G LR G+NRIGNLLVPN+NYCKFEDW++PI DQ
Sbjct: 122 TTAGGVEEDLIKCLAPTYLGEFSLRGKELRENGINRIGNLLVPNENYCKFEDWLMPILDQ 181
Query: 189 MLKEQNEEEISWTPSKVIARLGKEINDESSYLYWAYKNNIPVFCPGLTDGSLGDMLYFHS 248
M+ EQN E + WTPSK+IARLGKEIN+ S YWA KN+IPVF P LTDGSLGDM++FHS
Sbjct: 182 MVMEQNTEGVKWTPSKMIARLGKEINNPESVYYWAQKNHIPVFSPALTDGSLGDMIFFHS 241
Query: 249 FRSPGLIIDIVQDIRAINGEAVHASPRKTGLIILGGGLPKHHICNANMMRNGADYAVFIN 308
+++PGL++DIV+D+R IN +A+ A + TG+IILGGG+ KHHI NAN+MRNGADYAV+IN
Sbjct: 242 YKNPGLVLDIVEDLRLINTQAIFA--KCTGMIILGGGVVKHHIANANLMRNGADYAVYIN 299
Query: 309 TAQEFDGSDSGARPDEAVSWGKIRGSAKTVKVHCDATIAFPLLVAETFASRRNKFV 364
TAQEFDGSDSGARPDEAVSWGKIR A+ VKV+ DA++ FPLLVAETFA + + F+
Sbjct: 300 TAQEFDGSDSGARPDEAVSWGKIRVDAQPVKVYADASLVFPLLVAETFAQKMDAFM 355
>pdb|1LWD|A Chain A, Crystal Structure Of Nadp-Dependent Isocitrate
Dehydrogenase From Porcine Heart Mitochondria
pdb|1LWD|B Chain B, Crystal Structure Of Nadp-Dependent Isocitrate
Dehydrogenase From Porcine Heart Mitochondria
Length = 413
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 41/99 (41%), Gaps = 11/99 (11%)
Query: 177 KFEDWIIPIFDQMLKEQNEEEISWTPSKVIARLGKEINDESSYLYWAYKNNIPVFCPGLT 236
+F+D IF++ K ++ W ++I + ++ S WA KN
Sbjct: 222 RFKDIFQEIFEKHYKTDFDKYKIWYEHRLIDDMVAQVLKSSGGFVWACKN---------Y 272
Query: 237 DGSLGDMLYFHSFRSPGLIIDIV--QDIRAINGEAVHAS 273
DG + + F S GL+ ++ D + I EA H +
Sbjct: 273 DGDVQSDILAQGFGSLGLMTSVLVCPDGKTIEAEAAHGT 311
>pdb|3FRY|A Chain A, Crystal Structure Of The Copa C-Terminal Metal Binding
Domain
pdb|3FRY|B Chain B, Crystal Structure Of The Copa C-Terminal Metal Binding
Domain
Length = 73
Score = 28.9 bits (63), Expect = 5.2, Method: Composition-based stats.
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 6/51 (11%)
Query: 10 SVHSTVFKESESLEGKGTKIEGYDFNQGV------NYSQLLKSMVSTGFQA 54
S H V + ++LE G K+E D N+ V + + +K++ + G+QA
Sbjct: 15 SCHHCVARVKKALEEAGAKVEKVDLNEAVVAGNKEDVDKYIKAVEAAGYQA 65
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,073,351
Number of Sequences: 62578
Number of extensions: 464083
Number of successful extensions: 977
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 970
Number of HSP's gapped (non-prelim): 9
length of query: 368
length of database: 14,973,337
effective HSP length: 100
effective length of query: 268
effective length of database: 8,715,537
effective search space: 2335763916
effective search space used: 2335763916
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)