Query 017671
Match_columns 368
No_of_seqs 129 out of 515
Neff 5.0
Searched_HMMs 46136
Date Fri Mar 29 02:25:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017671.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017671hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2924 Deoxyhypusine synthase 100.0 2E-135 4E-140 965.8 24.1 358 4-365 6-364 (366)
2 PRK03971 putative deoxyhypusin 100.0 3E-122 6E-127 905.0 31.3 323 10-356 3-333 (334)
3 TIGR00321 dhys deoxyhypusine s 100.0 4E-118 8E-123 865.9 30.3 300 28-357 1-301 (301)
4 PRK01221 putative deoxyhypusin 100.0 8E-118 2E-122 867.1 30.2 301 27-357 9-312 (312)
5 PRK02301 putative deoxyhypusin 100.0 9E-118 2E-122 867.6 30.0 302 27-359 12-315 (316)
6 COG1899 DYS1 Deoxyhypusine syn 100.0 2E-116 4E-121 849.3 30.8 303 28-360 10-316 (318)
7 PRK00805 putative deoxyhypusin 100.0 2E-115 5E-120 854.5 29.3 304 27-361 2-315 (329)
8 PRK02492 deoxyhypusine synthas 100.0 1E-112 3E-117 840.5 28.8 308 26-366 13-335 (347)
9 PF01916 DS: Deoxyhypusine syn 100.0 2E-113 4E-118 833.7 19.7 296 41-357 2-299 (299)
10 PRK00770 deoxyhypusine synthas 100.0 6E-108 1E-112 816.5 27.5 305 27-363 7-336 (384)
11 COG1915 Uncharacterized conser 94.5 0.17 3.6E-06 50.9 8.3 204 94-357 199-405 (415)
12 TIGR00300 conserved hypothetic 91.6 1.3 2.8E-05 45.8 9.8 199 95-355 201-404 (407)
13 cd03412 CbiK_N Anaerobic cobal 76.5 8.8 0.00019 33.1 6.4 73 50-144 6-95 (127)
14 TIGR00640 acid_CoA_mut_C methy 69.0 40 0.00086 29.5 8.8 88 43-170 21-114 (132)
15 COG0521 MoaB Molybdopterin bio 65.4 5.1 0.00011 37.0 2.6 22 111-133 56-77 (169)
16 cd02072 Glm_B12_BD B12 binding 64.1 21 0.00046 31.4 6.1 88 43-167 18-114 (128)
17 PF12854 PPR_1: PPR repeat 59.4 12 0.00025 25.0 2.9 27 37-67 7-33 (34)
18 PRK02261 methylaspartate mutas 59.2 83 0.0018 27.6 9.0 105 46-186 26-134 (137)
19 PF04422 FrhB_FdhB_N: Coenzyme 58.1 11 0.00024 30.3 3.0 42 101-146 17-71 (82)
20 PF04210 MtrG: Tetrahydrometha 57.0 11 0.00025 30.1 2.8 49 166-223 5-53 (70)
21 PRK07313 phosphopantothenoylcy 56.2 11 0.00024 34.7 3.1 46 97-142 3-51 (182)
22 TIGR00421 ubiX_pad polyprenyl 55.8 11 0.00024 34.7 3.0 37 97-133 1-38 (181)
23 COG4064 MtrG Tetrahydromethano 51.9 16 0.00034 29.4 2.8 50 165-223 7-56 (75)
24 COG0350 Ada Methylated DNA-pro 51.8 19 0.00042 32.9 3.9 52 180-234 88-139 (168)
25 PRK05920 aromatic acid decarbo 51.5 16 0.00035 34.5 3.5 39 95-133 3-42 (204)
26 TIGR02113 coaC_strep phosphopa 51.3 14 0.00029 34.0 2.8 37 97-133 2-39 (177)
27 TIGR00756 PPR pentatricopeptid 51.2 32 0.0007 21.1 3.9 27 39-69 2-28 (35)
28 PF01535 PPR: PPR repeat; Int 51.1 28 0.0006 21.2 3.5 27 39-69 2-28 (31)
29 cd02071 MM_CoA_mut_B12_BD meth 50.4 59 0.0013 27.5 6.4 73 43-138 18-94 (122)
30 PRK13982 bifunctional SbtC-lik 49.3 68 0.0015 34.2 8.0 99 43-143 13-121 (475)
31 PRK06029 3-octaprenyl-4-hydrox 48.9 15 0.00032 34.2 2.7 37 97-133 3-41 (185)
32 PF04361 DUF494: Protein of un 48.9 52 0.0011 29.8 6.2 78 38-126 21-98 (155)
33 PRK08305 spoVFB dipicolinate s 48.8 19 0.00042 33.9 3.5 39 95-133 5-45 (196)
34 PF13041 PPR_2: PPR repeat fam 48.1 30 0.00065 24.3 3.7 31 38-72 4-34 (50)
35 COG0303 MoeA Molybdopterin bio 47.9 12 0.00027 38.8 2.2 78 109-191 230-321 (404)
36 PHA02575 1 deoxynucleoside mon 47.4 1.7E+02 0.0036 28.4 9.6 121 101-225 4-146 (227)
37 PRK09417 mogA molybdenum cofac 46.9 16 0.00035 34.1 2.7 23 111-133 54-76 (193)
38 cd01421 IMPCH Inosine monophos 45.7 1.1E+02 0.0024 28.9 7.9 112 97-232 2-142 (187)
39 PRK03430 hypothetical protein; 42.5 70 0.0015 29.3 6.0 81 37-126 20-100 (157)
40 TIGR01501 MthylAspMutase methy 41.9 1.4E+02 0.0031 26.4 7.7 88 43-167 20-116 (134)
41 cd00758 MoCF_BD MoCF_BD: molyb 41.0 23 0.0005 30.4 2.5 23 109-133 46-68 (133)
42 PF04492 Phage_rep_O: Bacterio 40.7 28 0.0006 29.4 2.9 74 33-124 9-84 (100)
43 COG2896 MoaA Molybdenum cofact 40.1 63 0.0014 32.8 5.8 115 98-230 63-183 (322)
44 TIGR02667 moaB_proteo molybden 40.0 25 0.00055 31.6 2.8 24 110-133 50-73 (163)
45 PF00994 MoCF_biosynth: Probab 39.9 26 0.00056 30.3 2.7 23 109-133 44-66 (144)
46 TIGR00679 hpr-ser Hpr(Ser) kin 39.7 17 0.00037 36.6 1.7 81 211-302 90-172 (304)
47 PRK02122 glucosamine-6-phospha 38.2 96 0.0021 34.3 7.3 120 9-140 291-419 (652)
48 PF13812 PPR_3: Pentatricopept 38.1 58 0.0013 20.2 3.6 27 39-69 3-29 (34)
49 PLN02800 imidazoleglycerol-pho 38.0 32 0.00069 34.0 3.2 73 94-172 74-161 (261)
50 PRK01026 tetrahydromethanopter 37.8 29 0.00062 28.3 2.4 48 167-223 9-56 (77)
51 PF14420 Clr5: Clr5 domain 37.4 26 0.00057 26.0 2.0 27 29-55 12-39 (54)
52 TIGR01149 mtrG N5-methyltetrah 37.0 30 0.00066 27.7 2.4 48 167-223 6-53 (70)
53 smart00852 MoCF_biosynth Proba 36.7 29 0.00063 29.6 2.5 22 110-133 46-67 (135)
54 COG0703 AroK Shikimate kinase 36.6 37 0.0008 31.5 3.3 31 112-144 62-94 (172)
55 TIGR02700 flavo_MJ0208 archaeo 36.6 32 0.0007 32.7 3.0 37 97-133 1-41 (234)
56 PF09743 DUF2042: Uncharacteri 34.7 88 0.0019 30.9 5.8 21 112-132 27-47 (272)
57 PF00867 XPG_I: XPG I-region; 34.7 26 0.00055 28.6 1.7 17 114-130 17-33 (94)
58 PF00475 IGPD: Imidazoleglycer 34.5 30 0.00065 31.3 2.3 54 113-173 8-69 (145)
59 PRK06242 flavodoxin; Provision 34.2 1.6E+02 0.0034 25.1 6.7 38 97-135 46-87 (150)
60 PRK14021 bifunctional shikimat 33.4 4.6E+02 0.01 28.1 11.4 275 37-347 46-344 (542)
61 TIGR00521 coaBC_dfp phosphopan 33.2 41 0.00088 34.8 3.3 48 95-142 3-53 (390)
62 PRK05579 bifunctional phosphop 32.9 43 0.00092 34.7 3.4 50 94-143 5-57 (399)
63 TIGR02852 spore_dpaB dipicolin 31.2 49 0.0011 30.9 3.2 37 97-133 2-40 (187)
64 PRK10076 pyruvate formate lyas 31.1 41 0.00089 31.7 2.7 118 103-239 9-144 (213)
65 PF06180 CbiK: Cobalt chelatas 30.6 95 0.0021 30.5 5.2 63 59-142 18-95 (262)
66 PF04055 Radical_SAM: Radical 30.2 91 0.002 25.7 4.4 27 157-183 136-164 (166)
67 PLN02891 IMP cyclohydrolase 30.0 1.2E+02 0.0025 33.1 6.1 104 108-232 32-165 (547)
68 TIGR00269 conserved hypothetic 29.9 74 0.0016 26.6 3.8 54 215-268 11-70 (104)
69 KOG4062 6-O-methylguanine-DNA 29.3 73 0.0016 29.6 3.9 79 153-234 57-140 (178)
70 COG5012 Predicted cobalamin bi 28.6 1.3E+02 0.0029 29.2 5.6 82 43-148 123-212 (227)
71 PRK05446 imidazole glycerol-ph 28.3 59 0.0013 33.2 3.5 73 91-173 172-262 (354)
72 KOG3614 Ca2+/Mg2+-permeable ca 27.0 20 0.00044 42.4 -0.1 82 41-143 71-169 (1381)
73 PRK05301 pyrroloquinoline quin 27.0 6.5E+02 0.014 25.2 11.1 39 105-143 73-111 (378)
74 TIGR01747 diampropi_NH3ly diam 26.5 75 0.0016 32.5 3.9 47 95-141 316-372 (376)
75 cd07914 IGPD Imidazoleglycerol 25.8 73 0.0016 30.1 3.3 61 105-172 24-95 (190)
76 cd08551 Fe-ADH iron-containing 25.7 2.7E+02 0.0059 27.9 7.6 47 96-143 54-100 (370)
77 smart00484 XPGI Xeroderma pigm 25.4 56 0.0012 25.9 2.1 17 114-130 17-33 (73)
78 KOG1361 Predicted hydrolase in 25.3 27 0.00058 37.3 0.4 105 123-233 177-292 (481)
79 PRK14498 putative molybdopteri 25.2 94 0.002 33.7 4.5 77 110-191 241-330 (633)
80 PRK09224 threonine dehydratase 24.5 1.2E+02 0.0025 32.4 4.9 47 95-142 270-317 (504)
81 TIGR00589 ogt O-6-methylguanin 24.3 1.6E+02 0.0034 23.7 4.6 59 181-242 3-65 (80)
82 TIGR02699 archaeo_AfpA archaeo 24.2 70 0.0015 29.5 2.9 35 97-133 1-40 (174)
83 cd00885 cinA Competence-damage 23.9 63 0.0014 29.3 2.5 22 110-133 47-68 (170)
84 PRK14491 putative bifunctional 23.6 96 0.0021 33.8 4.2 77 110-191 422-511 (597)
85 PF07005 DUF1537: Protein of u 23.6 86 0.0019 28.9 3.4 37 107-143 179-215 (223)
86 cd00886 MogA_MoaB MogA_MoaB fa 23.4 72 0.0016 28.1 2.7 23 111-133 49-71 (152)
87 PRK00951 hisB imidazoleglycero 23.2 1.1E+02 0.0025 29.0 4.1 60 105-171 28-98 (195)
88 TIGR01001 metA homoserine O-su 22.9 55 0.0012 33.0 2.1 34 103-136 77-112 (300)
89 TIGR01124 ilvA_2Cterm threonin 22.6 1.3E+02 0.0029 32.0 5.0 47 95-141 267-313 (499)
90 PF02441 Flavoprotein: Flavopr 22.4 90 0.0019 26.5 3.0 37 97-133 2-39 (129)
91 TIGR00177 molyb_syn molybdenum 22.2 73 0.0016 27.8 2.5 22 110-133 55-76 (144)
92 cd08177 MAR Maleylacetate redu 22.0 4.4E+02 0.0095 26.2 8.3 47 96-143 51-97 (337)
93 COG0131 HisB Imidazoleglycerol 22.0 92 0.002 29.6 3.2 64 103-173 26-101 (195)
94 PRK09529 bifunctional acetyl-C 21.7 1.3E+02 0.0028 33.7 4.6 119 94-231 563-705 (711)
95 PF13378 MR_MLE_C: Enolase C-t 21.6 1.2E+02 0.0025 24.8 3.5 31 217-248 36-66 (111)
96 cd03409 Chelatase_Class_II Cla 21.6 3E+02 0.0065 21.6 5.8 69 56-146 14-87 (101)
97 PRK15321 putative type III sec 20.9 38 0.00083 29.1 0.4 12 317-328 109-120 (120)
98 cd02069 methionine_synthase_B1 20.5 1.8E+02 0.0039 27.4 4.9 76 43-142 107-187 (213)
99 TIGR00316 cdhC CO dehydrogenas 20.3 91 0.002 33.1 3.1 90 94-191 262-374 (458)
No 1
>KOG2924 consensus Deoxyhypusine synthase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-135 Score=965.78 Aligned_cols=358 Identities=67% Similarity=1.116 Sum_probs=345.6
Q ss_pred CcccccccccccccccccCCCCCccccccccCCCCCHHHHHHHHhhcCcccccHHHHHHHHHHHHhccccCCCCCccc-c
Q 017671 4 NSNVMASVHSTVFKESESLEGKGTKIEGYDFNQGVNYSQLLKSMVSTGFQASNFGDAIEVVNQMLDWRLADEVIPEDC-D 82 (368)
Q Consensus 4 ~~~~~~~~~~avl~~s~~~~~~~~~V~g~d~~~~~~~~~L~~~~~~~GFqA~~l~~A~~i~~~M~~~~~~d~~~~~~~-~ 82 (368)
+...|+.+++||++.|+++|+...+|+||||+++.++.+|+++|.+|||||+||++|++++++|++|| |+|+..|+ .
T Consensus 6 ~~~~p~l~~daVl~~s~~~~d~s~~v~G~Dfnk~~~~~~l~~s~~t~GFQatnl~~Av~~in~M~~~r--d~~~~~d~d~ 83 (366)
T KOG2924|consen 6 EREAPALAQDAVLKHSSKLPDESTQVRGYDFNKGVDYSALLESFGTTGFQATNLGRAVQQINRMLNWR--DEPLSADDDS 83 (366)
T ss_pred hhccchhhHHHHHHhccCCCCCCcccccccccccccHHHHHHHHhccccccccHHHHHHHHHHHHhcc--cCcccccccc
Confidence 56789999999999999999999999999999999999999999999999999999999999999999 77777554 4
Q ss_pred cccCCccccccccceEEEccccccchhhhHHHHHHHHhcCceeEEEeCCCchhHHHHHhhcCccccCCCCCchhHHhCCC
Q 017671 83 ERERDPEYRKSVRCKVFLGFTSNLISSGVRDTVRYLVQHHMVDVVVTTAGGIEEDLVKCLAPTFKGDFALPGAYLRSKGL 162 (368)
Q Consensus 83 ~~~~~~~~~~~~~~tIfL~~tgnmvssGlr~~i~~Li~~~~VD~IVtTgg~lehDi~~~l~~~y~G~~~~dd~~Lr~~gi 162 (368)
++...+..|....||||||||||+||||+|++||+|+||+||||||||+|++|||++|||+|+|.|+|.+++++||++|+
T Consensus 84 ~~~~~~~~r~~~~ctIFlGyTSNliSSGlRetirylvqh~mVdviVttaGGvEEDlIKclaPTy~g~F~L~G~~LR~~Gl 163 (366)
T KOG2924|consen 84 HEDLTFSRRPLTSCTIFLGYTSNLISSGLRETIRYLVQHNMVDVIVTTAGGVEEDLIKCLAPTYLGDFSLDGKELRENGL 163 (366)
T ss_pred ccccCcccccccceEEEEecchhhhhhhHHHHHHHHHHhcceeEEEecCCccHHHHHHHhCccceeeeecChHHHHhhhh
Confidence 45666778889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeeeeecCccHHHHHHHHHHHHHHHHHhhcccCcccCHHHHHHHhccccCCCchHHHHHHHCCCceecCCCCchhHHH
Q 017671 163 NRIGNLLVPNDNYCKFEDWIIPIFDQMLKEQNEEEISWTPSKVIARLGKEINDESSYLYWAYKNNIPVFCPGLTDGSLGD 242 (368)
Q Consensus 163 nRigdv~ip~e~y~~~E~~i~~il~~l~~~q~~~~~~~t~~e~~~~lG~~i~~e~Sil~~A~k~~VPVf~Pa~tDgsiG~ 242 (368)
|||||++|||||||+||+|+.||+++|+++|+.++..||||+||++||++||+|+|||||||||+|||||||+||||+|+
T Consensus 164 NRiGNllvPndNYckfEdWl~pIld~mleeq~~~~~iwTPSk~I~rlGk~IndesSvlYWA~Kn~IPvf~PaltDGSlGD 243 (366)
T KOG2924|consen 164 NRIGNLLVPNDNYCKFEDWLMPILDEMLEEQKTEGVIWTPSKMIARLGKEINDESSVLYWAAKNHIPVFSPALTDGSLGD 243 (366)
T ss_pred hhhccEecCCcchhhHHHHHHHHHHHHHHHhhhcCcccCHHHHHHHHhhhhCCccceeehhhhCCCceecccccCCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhHhcCCCcEeehHHHHHHHHHHHhhcCCCceeEEEEcCCCchhhhhhcccccCCceEEEEEecCCCCCCCCCCCCc
Q 017671 243 MLYFHSFRSPGLIIDIVQDIRAINGEAVHASPRKTGLIILGGGLPKHHICNANMMRNGADYAVFINTAQEFDGSDSGARP 322 (368)
Q Consensus 243 ~l~~~~~~~~~~~~D~v~D~~~l~~i~~~s~~~~~G~iilGGGVpKh~i~~~~l~r~G~DYaVqItta~e~dGslSGA~p 322 (368)
|||||++|.+++++|+|+|+++||.+++.+ .++|+|||||||+||||||+||||||+||+|||||+||||||+|||+|
T Consensus 244 mlyFHs~k~~~L~~DIv~Dir~iNt~av~a--~~tgmIIlGgGvvKHHI~NAnLmrNGad~~VyINtaqEfDGSDsGArp 321 (366)
T KOG2924|consen 244 MLYFHSFKNSGLVLDIVEDIRRINTEAVFA--NKTGMIILGGGVVKHHICNANLMRNGADYAVYINTAQEFDGSDSGARP 321 (366)
T ss_pred eEEEeeccCCCeEEeHHHHHHhhhhhhhhc--cccceEEEcCchhhhhcchhhhhhcCcceEEEecccccccCcccCCCc
Confidence 999999999999999999999999999999 899999999999999999999999999999999999999999999999
Q ss_pred cchhhcccccCCCCcEEEEeehhhhHHHHHHHHHhcccccccc
Q 017671 323 DEAVSWGKIRGSAKTVKVHCDATIAFPLLVAETFASRRNKFVE 365 (368)
Q Consensus 323 ~EAiSWGKi~~~a~~v~V~~DATIv~PLlva~~~~~~~~~~~~ 365 (368)
+||||||||+++++.|+||+||||+|||||+++|+++.....+
T Consensus 322 DEAVSWGKir~~a~~VKvy~datlvfPLlVaeTFa~~~~~~~~ 364 (366)
T KOG2924|consen 322 DEAVSWGKIRPDAKPVKVYADATLVFPLLVAETFAKKMDAFPK 364 (366)
T ss_pred ccccccccccCCCceEEEEeeeeehhHHHHHHHHHhcCCcccC
Confidence 9999999999999999999999999999999999998765433
No 2
>PRK03971 putative deoxyhypusine synthase; Provisional
Probab=100.00 E-value=2.8e-122 Score=904.99 Aligned_cols=323 Identities=49% Similarity=0.863 Sum_probs=312.6
Q ss_pred ccccccccccccCCCCCccccccccCCCCCHHHHHHHHhhcCcccccHHHHHHHHHHHHhccccCCCCCcccccccCCcc
Q 017671 10 SVHSTVFKESESLEGKGTKIEGYDFNQGVNYSQLLKSMVSTGFQASNFGDAIEVVNQMLDWRLADEVIPEDCDERERDPE 89 (368)
Q Consensus 10 ~~~~avl~~s~~~~~~~~~V~g~d~~~~~~~~~L~~~~~~~GFqA~~l~~A~~i~~~M~~~~~~d~~~~~~~~~~~~~~~ 89 (368)
.|.++|++.|++++. .+|+|+||++++++++|+++|+++||||++|++|++|+++|++||. +
T Consensus 3 ~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~l~~~~~~~gF~A~~l~~A~~i~~~M~~~~~-~--------------- 64 (334)
T PRK03971 3 DPKDIVLKESEELEG--IDVEGPDLDGDIDLEEVLDYYAKIGFQATHLGKAIKIWKKIEEKRK-K--------------- 64 (334)
T ss_pred chhhhhhcccccCCC--CCccCCCCCCCCCHHHHHHHHHHcCccHHHHHHHHHHHHHHHhhcc-c---------------
Confidence 578999999999974 7899999999999999999999999999999999999999999985 3
Q ss_pred ccccccceEEEccccccchhhhHHHHHHHHhcCceeEEEeCCCchhHHHHHhhcCccccCCCCCchhHHhCCCcceeeee
Q 017671 90 YRKSVRCKVFLGFTSNLISSGVRDTVRYLVQHHMVDVVVTTAGGIEEDLVKCLAPTFKGDFALPGAYLRSKGLNRIGNLL 169 (368)
Q Consensus 90 ~~~~~~~tIfL~~tgnmvssGlr~~i~~Li~~~~VD~IVtTgg~lehDi~~~l~~~y~G~~~~dd~~Lr~~ginRigdv~ 169 (368)
.+|||||||||||+|||||++|++|||+|+||+|||||||||||++||+++||+|+|.+||.+||++|+||||||+
T Consensus 65 ----~~~~ifL~~tg~misaGlr~~i~~Li~~~~Vd~iVtTganlehDi~~~l~~~~~G~f~~dd~~Lr~~ginRIgnv~ 140 (334)
T PRK03971 65 ----EEATVFLGYTSNIVSSGLREIIAYLVKEKKVDVIVTTAGGVEEDFIKCLKPFILGEWDVDGAELREKGINRIGNIF 140 (334)
T ss_pred ----CCCeEEEEccccccchhHHHHHHHHHHcCCeeEEEeCCCchHHHHHHHhcccccCCCCCCHHHHHHcCCCccceee
Confidence 4799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCccHHHHHHHHHHHHHHHHHhhcccCcccCHHHHHHHhccccCC------CchHHHHHHHCCCceecCCCCchhHHHH
Q 017671 170 VPNDNYCKFEDWIIPIFDQMLKEQNEEEISWTPSKVIARLGKEIND------ESSYLYWAYKNNIPVFCPGLTDGSLGDM 243 (368)
Q Consensus 170 ip~e~y~~~E~~i~~il~~l~~~q~~~~~~~t~~e~~~~lG~~i~~------e~Sil~~A~k~~VPVf~Pa~tDgsiG~~ 243 (368)
||||+|+.||+|++++|++|+++|++.+.+|||+||+++||++|++ |+|||||||||||||||||++|||+|++
T Consensus 141 ip~e~y~~~E~~i~~il~~~~~~q~~~~~~~s~~e~i~~lGk~i~~~~~~~~e~Sil~~Ayk~~VPIf~Pa~tDgsiG~~ 220 (334)
T PRK03971 141 VPNDRYIEFEEYMYEFFEELLAKQREEGKIITASEFCYELGRFMDEKLGKEKEKSILYWAYKNNIPIFCPAITDGSIGDM 220 (334)
T ss_pred eChHHHHHHHHHHHHHHHHHHHhhhccCCcccHHHHHHHHHHHHhhhccCCccchHHHHHHHcCCCEEcCCcchhhHHHH
Confidence 9999999999999999999999987777889999999999999987 9999999999999999999999999999
Q ss_pred HHHhHhcC--CCcEeehHHHHHHHHHHHhhcCCCceeEEEEcCCCchhhhhhcccccCCceEEEEEecCCCCCCCCCCCC
Q 017671 244 LYFHSFRS--PGLIIDIVQDIRAINGEAVHASPRKTGLIILGGGLPKHHICNANMMRNGADYAVFINTAQEFDGSDSGAR 321 (368)
Q Consensus 244 l~~~~~~~--~~~~~D~v~D~~~l~~i~~~s~~~~~G~iilGGGVpKh~i~~~~l~r~G~DYaVqItta~e~dGslSGA~ 321 (368)
+|+|++++ +++.+|+++|+++|+++++++ +++|+|||||||||||+|||||+|+|+||+||||||+|+||||||||
T Consensus 221 l~~~~~~~~~~~l~~D~~~D~~~l~~i~~~s--~k~G~iilGGGvpKh~~~~~~l~~~G~dYaVqItta~~~dGslSGA~ 298 (334)
T PRK03971 221 LYFFKKEGKDSELGIDIANDIVKLNDLAITA--KETACIVLGGSLPKHSIINANLFRGGTDYAIYITTAMPWDGSLSGAP 298 (334)
T ss_pred HHHHHhhcCCCceEEeHHHHHHHHHHHHhcc--CceEEEEECCchHHHHHHHHhcccCCCCEEEEEeCCCCCCCcccCCC
Confidence 99999853 359999999999999999998 99999999999999999999999999999999999999999999999
Q ss_pred ccchhhcccccCCCCcEEEEeehhhhHHHHHHHHH
Q 017671 322 PDEAVSWGKIRGSAKTVKVHCDATIAFPLLVAETF 356 (368)
Q Consensus 322 p~EAiSWGKi~~~a~~v~V~~DATIv~PLlva~~~ 356 (368)
|+||||||||+++++.|+|||||||+||||++++|
T Consensus 299 p~EAvSWGKi~~~a~~v~V~~DATIv~PLl~a~~~ 333 (334)
T PRK03971 299 PEEGVSWGKIKAKADYVEIWADATLVFPLLVYGVF 333 (334)
T ss_pred hhhhhccCCccCCCCeEEEEEehhhHHHHHHHHhc
Confidence 99999999999999999999999999999999997
No 3
>TIGR00321 dhys deoxyhypusine synthase. This family of apparent orthologs has an unusual UPGMA difference tree, in which the members from the archaea M. jannaschii and P. horikoshii cluster with the known eukaryotic deoxyhypusine synthases. Separated by a fairly deep branch, although still strongly related, is a small cluster of proteins from Methanobacterium thermoautotrophicum and Archeoglobus fulgidus, the latter of which has two.
Probab=100.00 E-value=3.9e-118 Score=865.91 Aligned_cols=300 Identities=50% Similarity=0.838 Sum_probs=291.0
Q ss_pred cccccccCCCCCHHHHHHHHhhcCcccccHHHHHHHHHHHHhccccCCCCCcccccccCCccccccccceEEEccccccc
Q 017671 28 KIEGYDFNQGVNYSQLLKSMVSTGFQASNFGDAIEVVNQMLDWRLADEVIPEDCDERERDPEYRKSVRCKVFLGFTSNLI 107 (368)
Q Consensus 28 ~V~g~d~~~~~~~~~L~~~~~~~GFqA~~l~~A~~i~~~M~~~~~~d~~~~~~~~~~~~~~~~~~~~~~tIfL~~tgnmv 107 (368)
.|+++||++++++++|+++|.++||||++|++|++++++|++ | .+|||||||||||+
T Consensus 1 ~v~~~~~~~~~~v~~lv~~~~~~gF~a~~l~~A~~i~~~m~~----~-------------------~~~~ifLt~tg~mv 57 (301)
T TIGR00321 1 KVMGPQISSGITVCELIDSMGRTGFQGRRIGEADKIWKEMCF----D-------------------EEITIFMGYAGNLV 57 (301)
T ss_pred CCCCCcCCCCCcHHHHHHHHHhcCccHHHHHHHHHHHHHHHh----C-------------------CCCeEEEEeccccc
Confidence 389999999999999999999999999999999999999997 4 46999999999999
Q ss_pred hhhhHHHHHHHHhcCceeEEEeCCCchhHHHHHhhcCccccCCCCCchhHHhCCCcceeeeeecCccHHHHHHHHHHHHH
Q 017671 108 SSGVRDTVRYLVQHHMVDVVVTTAGGIEEDLVKCLAPTFKGDFALPGAYLRSKGLNRIGNLLVPNDNYCKFEDWIIPIFD 187 (368)
Q Consensus 108 ssGlr~~i~~Li~~~~VD~IVtTgg~lehDi~~~l~~~y~G~~~~dd~~Lr~~ginRigdv~ip~e~y~~~E~~i~~il~ 187 (368)
|||||++|++|||+|+||+|||||||||||++||+|++|.|+|.+||.+||++|||||||+|||||+|+.||+|++++|+
T Consensus 58 saGlr~ii~~Li~~g~Vd~ivtTganl~hD~~~~~g~~~~g~f~~dd~~Lr~~ginRI~dv~ip~e~y~~~E~~i~~i~~ 137 (301)
T TIGR00321 58 PSGMREIIAYLIQHGMIDALVTTGANLEHDLIEALGPTHLGDFAVDDKKLREEGINRIGDVFVPNENFEVFEEWLVEIFS 137 (301)
T ss_pred hhhHHHHHHHHHHcCCeeEEEeCCCchHHHHHHHcCcccccCCCCChHHHHHcCCCccceecCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999987779999999999999999999999999999999999999999
Q ss_pred HHHHhhcccCcccCHHHHHHHhccccCC-CchHHHHHHHCCCceecCCCCchhHHHHHHHhHhcCCCcEeehHHHHHHHH
Q 017671 188 QMLKEQNEEEISWTPSKVIARLGKEIND-ESSYLYWAYKNNIPVFCPGLTDGSLGDMLYFHSFRSPGLIIDIVQDIRAIN 266 (368)
Q Consensus 188 ~l~~~q~~~~~~~t~~e~~~~lG~~i~~-e~Sil~~A~k~~VPVf~Pa~tDgsiG~~l~~~~~~~~~~~~D~v~D~~~l~ 266 (368)
+|.++|+ +|||+||+++||++|++ |+|||||||||||||||||++|||+|+++|+|++++ ++.+|+++|+++|+
T Consensus 138 ~~~~~~~----~~s~~e~i~~lGk~i~~~e~Sil~~Ayk~~VPIf~Pa~~DssiG~~l~~~~~~~-~l~iD~v~D~~~l~ 212 (301)
T TIGR00321 138 EMLGEQP----IITPSEFIDEIGKRINDKRSSIRYAAYKRKIPIFCPALTDSSIGLMLFFYTKKN-SLRIDIVRDIRKLN 212 (301)
T ss_pred HHHhcCC----CcCHHHHHHHHHhhcCCccchHHHHHHHcCCCEECCCchHhHHHHHHHHHHhcC-CeeeehHhhHHHHH
Confidence 9977665 69999999999999998 999999999999999999999999999999999985 79999999999999
Q ss_pred HHHhhcCCCceeEEEEcCCCchhhhhhcccccCCceEEEEEecCCCCCCCCCCCCccchhhcccccCCCCcEEEEeehhh
Q 017671 267 GEAVHASPRKTGLIILGGGLPKHHICNANMMRNGADYAVFINTAQEFDGSDSGARPDEAVSWGKIRGSAKTVKVHCDATI 346 (368)
Q Consensus 267 ~i~~~s~~~~~G~iilGGGVpKh~i~~~~l~r~G~DYaVqItta~e~dGslSGA~p~EAiSWGKi~~~a~~v~V~~DATI 346 (368)
++++++ +++|+|||||||||||+|||||+|+|+||+|||||++|+|||||||||+||||||||+++++.|+|||||||
T Consensus 213 ~i~~~~--~~~G~iilGGGvpKh~~~~~~l~~~G~dYaVqItta~~~dGslSGA~~~EAvSWGKi~~~a~~v~V~~DATI 290 (301)
T TIGR00321 213 DIVFNS--ERTGVIILGGGLPKHFILNACLLREGADYAVQITTDQPQDGSLSGAPLEEAVSWGKIKAKAKSVTVFGDATI 290 (301)
T ss_pred HHHHcc--CceEEEEECCchhhhHHHHhhhccCCCCEEEEEeCCCCCCCcccCCChhhhhccCCccCCCceEEEEEehhh
Confidence 999998 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHh
Q 017671 347 AFPLLVAETFA 357 (368)
Q Consensus 347 v~PLlva~~~~ 357 (368)
+||||++++|.
T Consensus 291 ~~PLl~a~~~~ 301 (301)
T TIGR00321 291 ALPVLVAGLLA 301 (301)
T ss_pred HHHHHHHHhhC
Confidence 99999999974
No 4
>PRK01221 putative deoxyhypusine synthase; Provisional
Probab=100.00 E-value=8.4e-118 Score=867.14 Aligned_cols=301 Identities=36% Similarity=0.681 Sum_probs=291.2
Q ss_pred ccccccccCCCCCHHHHHHHHhhc-CcccccHHHHHHHHHHHHhccccCCCCCcccccccCCccccccccceEEEccccc
Q 017671 27 TKIEGYDFNQGVNYSQLLKSMVST-GFQASNFGDAIEVVNQMLDWRLADEVIPEDCDERERDPEYRKSVRCKVFLGFTSN 105 (368)
Q Consensus 27 ~~V~g~d~~~~~~~~~L~~~~~~~-GFqA~~l~~A~~i~~~M~~~~~~d~~~~~~~~~~~~~~~~~~~~~~tIfL~~tgn 105 (368)
++|+++||++++++++|+++|.++ ||||++|++|++|+++|++ | ++|||||||||
T Consensus 9 ~~V~~~~~~~~~~~~~lv~~~~~~~gF~a~~l~~A~~i~~~ml~----d--------------------~~~ifL~~tg~ 64 (312)
T PRK01221 9 EPVEDIRLDDLTSISDLIEVYRKIGGFMAGHIVRASEILKEMIS----D--------------------ADLRFLSFTAN 64 (312)
T ss_pred CCCCCCCCCCCCCHHHHHHHhhccCCcchHHHHHHHHHHHHHHc----C--------------------CCeEEEEecch
Confidence 579999999999999999999999 9999999999999999998 4 36999999999
Q ss_pred cchhhhHHHHHHHHhcCceeEEEeCCCchhHHHHHhhcC-ccccCCCCCchhHHhCCCcceeeeeecCccHHH-HHHHHH
Q 017671 106 LISSGVRDTVRYLVQHHMVDVVVTTAGGIEEDLVKCLAP-TFKGDFALPGAYLRSKGLNRIGNLLVPNDNYCK-FEDWII 183 (368)
Q Consensus 106 mvssGlr~~i~~Li~~~~VD~IVtTgg~lehDi~~~l~~-~y~G~~~~dd~~Lr~~ginRigdv~ip~e~y~~-~E~~i~ 183 (368)
|+|||||++|++|||+|+|||||||||||+||++||+|+ ||+|+|.+||.+||++|||||||+|||||||+. ||+|++
T Consensus 65 mvs~Glr~ii~~Li~~~~VD~iVtTgani~hD~~~~lg~~~y~G~~~~dd~~Lr~~GinRIgdv~ip~e~y~~~~E~~i~ 144 (312)
T PRK01221 65 LVSTGLRGLIADLIKRGLFNVVITTCGTLDHDIARSFGGVYYKGSFDIDDAMLKDLGIHRLGNVLIPVESYGPLIEKFVR 144 (312)
T ss_pred hHHHHHHHHHHHHHHcCCeeEEEeCCCchHHHHHHHcCCCeEecCCCCChHHHHHcCCCcceeeccChHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999986 999999999999999999999999999999955 999999
Q ss_pred HHHHHHHHhhcccCcccCHHHHHHHhccccCCCchHHHHHHHCCCceecCCCCchhHHHHHHHhHhcCCCcEeehHHHHH
Q 017671 184 PIFDQMLKEQNEEEISWTPSKVIARLGKEINDESSYLYWAYKNNIPVFCPGLTDGSLGDMLYFHSFRSPGLIIDIVQDIR 263 (368)
Q Consensus 184 ~il~~l~~~q~~~~~~~t~~e~~~~lG~~i~~e~Sil~~A~k~~VPVf~Pa~tDgsiG~~l~~~~~~~~~~~~D~v~D~~ 263 (368)
++++++.++|+ +|||+||+++||++|++|+|||||||||||||||||++|||+|+++|+|++++++|.+|+++|++
T Consensus 145 ~il~~~~~~~~----~~s~~e~i~~lGk~i~~e~Sil~~Ay~~~VPVf~Pa~~DgsiG~~l~~~~~~~~~l~iD~~~D~~ 220 (312)
T PRK01221 145 KFLEELYKDKK----EWSTYELLWEFGKRINDENSILRAAYEKGVPVFVPGIVDGAFGTQLFTFSQRFGGFKINLLEDEE 220 (312)
T ss_pred HHHHHHHhcCC----CccHHHHHHHHHhhcCCcCcHHHHHHHcCCCEECCCccHHHHHHHHHHHhhcCCCcceeHHHHHH
Confidence 99999976554 69999999999999999999999999999999999999999999999999987789999999999
Q ss_pred HHHHHHhhcCCCceeEEEEcCCCchhhhhhcccccCCceEEEEEecCCCCCCCCCCCCccchhhcccccCCCCcEEEEee
Q 017671 264 AINGEAVHASPRKTGLIILGGGLPKHHICNANMMRNGADYAVFINTAQEFDGSDSGARPDEAVSWGKIRGSAKTVKVHCD 343 (368)
Q Consensus 264 ~l~~i~~~s~~~~~G~iilGGGVpKh~i~~~~l~r~G~DYaVqItta~e~dGslSGA~p~EAiSWGKi~~~a~~v~V~~D 343 (368)
+|+++++++ +++|+|||||||||||+|||||+|+|+|||||||||+|+|||||||||+||||||||+++++.|+||||
T Consensus 221 ~l~~~~~~a--~k~G~iilGGGvpKh~~~~~~~~~~G~DyaVqItta~~~dGslSGA~~~EAvSWGKv~~~a~~v~V~~D 298 (312)
T PRK01221 221 LLSDLVFSS--KKLGALIIGGGISKHHTIWWNQFKDGLDYAVYITTAVEYDGSLSGARPREAISWGKIKPEAKHVTIYGD 298 (312)
T ss_pred HHHHHHhcc--CceEEEEECCCcchhHHHHHHhhccCCCEEEEEeCCCCCCCcccCCChhhhhccCCccCCCceEEEEEe
Confidence 999999999 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHh
Q 017671 344 ATIAFPLLVAETFA 357 (368)
Q Consensus 344 ATIv~PLlva~~~~ 357 (368)
|||+||||+++++.
T Consensus 299 ATI~~PLi~a~~l~ 312 (312)
T PRK01221 299 ATIILPILAASLLS 312 (312)
T ss_pred hhhHHHHHHHHHhC
Confidence 99999999999873
No 5
>PRK02301 putative deoxyhypusine synthase; Provisional
Probab=100.00 E-value=9.3e-118 Score=867.59 Aligned_cols=302 Identities=28% Similarity=0.544 Sum_probs=292.2
Q ss_pred ccccccccCCCCCHHHHHHHHhhcCcccccHHHHHHHHHHHHhccccCCCCCcccccccCCccccccccceEEEcccccc
Q 017671 27 TKIEGYDFNQGVNYSQLLKSMVSTGFQASNFGDAIEVVNQMLDWRLADEVIPEDCDERERDPEYRKSVRCKVFLGFTSNL 106 (368)
Q Consensus 27 ~~V~g~d~~~~~~~~~L~~~~~~~GFqA~~l~~A~~i~~~M~~~~~~d~~~~~~~~~~~~~~~~~~~~~~tIfL~~tgnm 106 (368)
.+|+++||++++++++|+++|+++||||++|++|++++++|++ | .+|||||||||||
T Consensus 12 ~~v~~~~~~~~~~v~~l~~~~~~~gF~A~~l~~A~~i~~~ml~----~-------------------~~~~ifL~~tg~m 68 (316)
T PRK02301 12 DPVKQAEVRPGMTVGELVREYGGAGFGAGRLAEAVDIYEEMLA----D-------------------DDVTKFFGLAGAM 68 (316)
T ss_pred CCCCCCCCCCCCcHHHHHHHHHhcCccHHHHHHHHHHHHHHHh----C-------------------CCCeEEEEcccch
Confidence 5799999999999999999999999999999999999999996 4 5799999999999
Q ss_pred chhhhHHHHHHHHhcCceeEEEeCCCchhHHHHHhhc-CccccCCCCCchhHHhCCCcceeeeeecCccHHHHHHHHHHH
Q 017671 107 ISSGVRDTVRYLVQHHMVDVVVTTAGGIEEDLVKCLA-PTFKGDFALPGAYLRSKGLNRIGNLLVPNDNYCKFEDWIIPI 185 (368)
Q Consensus 107 vssGlr~~i~~Li~~~~VD~IVtTgg~lehDi~~~l~-~~y~G~~~~dd~~Lr~~ginRigdv~ip~e~y~~~E~~i~~i 185 (368)
+|||||++|++|||+|+||+|||||||||||++||+| +||+|+|.+||.+||++|||||||+|||||+|+.||+|++++
T Consensus 69 vsaGlr~ii~~Li~~~~VD~iVtTganiehD~~~~lg~~~y~G~~~~dd~~Lr~~ginRIgd~~ip~e~y~~~E~~i~~i 148 (316)
T PRK02301 69 VPAGMRGIVSDLIRDGHIDVLVTTGANLTHDVIEAIGGHHHHGTAHAHDEELRDEGIDRIYDVYLPQEHFADFEEFLQDV 148 (316)
T ss_pred hHHHHHHHHHHHHHcCCeeEEEcCCCchHHHHHHHcCCCeeccCCCCCHHHHHHcCCCccceeCCChHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999997 899999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcccCcccCHHHHHHHhccccCCCchHHHHHHHCCCceecCCCCchhHHHHHHHhHhcCCCcEeehHHHHHHH
Q 017671 186 FDQMLKEQNEEEISWTPSKVIARLGKEINDESSYLYWAYKNNIPVFCPGLTDGSLGDMLYFHSFRSPGLIIDIVQDIRAI 265 (368)
Q Consensus 186 l~~l~~~q~~~~~~~t~~e~~~~lG~~i~~e~Sil~~A~k~~VPVf~Pa~tDgsiG~~l~~~~~~~~~~~~D~v~D~~~l 265 (368)
|+++.+++ +|||+||+++||++|++|+|||||||||||||||||++|||+|+++|+|++++ ++.+|+++|+++|
T Consensus 149 l~~~~~~~-----~~s~~e~i~~lGk~i~~e~Sil~~Ay~~~VPIf~Pa~~DssiG~~l~~~~~~~-~l~iD~v~D~~~l 222 (316)
T PRK02301 149 FPGLEEEG-----TVSIRDLLTEIGRDLDDDSGILAAAYECDVPVYCPAIQDSVLGLQAWLYSQTN-KFTVDAFADMTEL 222 (316)
T ss_pred HHhhhhcC-----CcCHHHHHHHHHhhccCCCcHHHHHHHcCCCEECCCcchhHHHHHHHHHHhCC-CccccHHHHHHHH
Confidence 99986432 69999999999999999999999999999999999999999999999999975 6999999999999
Q ss_pred HHHHhhcCCCceeEEEEcCCCchhhhhhccccc-CCceEEEEEecCCCCCCCCCCCCccchhhcccccCCCCcEEEEeeh
Q 017671 266 NGEAVHASPRKTGLIILGGGLPKHHICNANMMR-NGADYAVFINTAQEFDGSDSGARPDEAVSWGKIRGSAKTVKVHCDA 344 (368)
Q Consensus 266 ~~i~~~s~~~~~G~iilGGGVpKh~i~~~~l~r-~G~DYaVqItta~e~dGslSGA~p~EAiSWGKi~~~a~~v~V~~DA 344 (368)
+++++++ +++|+|||||||||||+||+||++ +|+||+||||||+|+|||||||||+||||||||+++++.|+|||||
T Consensus 223 ~~~~~~a--~~~G~iilGGGvpKh~~~~~~l~~~~G~dYaVqItta~~~dGslSGA~~~EAvSWGKv~~~a~~v~V~~DA 300 (316)
T PRK02301 223 MDICYEA--ERAGALLVGGGVPKNYILQSMLVTPKAFDYAVQLTMDRPETGGLSGATLDEARSWGKLGEDAKNVTVYGDA 300 (316)
T ss_pred HHHHhcc--CceeEEEECCchHHHHHHHHHhccCCCCcEEEEEeCCCCCCccccCCChhhhhhcCCccCCCceEEEEEeh
Confidence 9999999 999999999999999999999999 5999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHhcc
Q 017671 345 TIAFPLLVAETFASR 359 (368)
Q Consensus 345 TIv~PLlva~~~~~~ 359 (368)
||+||||++++|++.
T Consensus 301 Ti~~PLl~a~~~~~~ 315 (316)
T PRK02301 301 TITLPLLVAAVRERI 315 (316)
T ss_pred hhHHHHHHHHHHhcc
Confidence 999999999999853
No 6
>COG1899 DYS1 Deoxyhypusine synthase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-116 Score=849.33 Aligned_cols=303 Identities=49% Similarity=0.849 Sum_probs=291.6
Q ss_pred cccccccCCCCCHHHHHHHHhhc-CcccccHHHHHHHHHHHHhccccCCCCCcccccccCCccccccccceEEEcccccc
Q 017671 28 KIEGYDFNQGVNYSQLLKSMVST-GFQASNFGDAIEVVNQMLDWRLADEVIPEDCDERERDPEYRKSVRCKVFLGFTSNL 106 (368)
Q Consensus 28 ~V~g~d~~~~~~~~~L~~~~~~~-GFqA~~l~~A~~i~~~M~~~~~~d~~~~~~~~~~~~~~~~~~~~~~tIfL~~tgnm 106 (368)
+++++++.+++++.+||+.|.++ ||||++|++|++||++|++ + ++|+||||||||
T Consensus 10 ~i~~~~~~~~~~~~eli~~~~~~~gF~a~~l~eA~~I~~~m~~----~--------------------~~tvfl~~tg~~ 65 (318)
T COG1899 10 PIKGIDISKDISVSELIDEMYKTGGFQARRLAEAVEILREMLE----S--------------------RVTVFLGLTGNL 65 (318)
T ss_pred cCCCCCccCCCcHHHHHHHHHhhccccchhHHHHHHHHHHHHh----h--------------------cCEEEEeccccc
Confidence 44559999999999999988887 6999999999999999999 3 399999999999
Q ss_pred chhhhHHHHHHHHhcCceeEEEeCCCchhHHHHHhhc-CccccCCCCCchhHHhCCCcceeeeeecCccHHHHHHHHHHH
Q 017671 107 ISSGVRDTVRYLVQHHMVDVVVTTAGGIEEDLVKCLA-PTFKGDFALPGAYLRSKGLNRIGNLLVPNDNYCKFEDWIIPI 185 (368)
Q Consensus 107 vssGlr~~i~~Li~~~~VD~IVtTgg~lehDi~~~l~-~~y~G~~~~dd~~Lr~~ginRigdv~ip~e~y~~~E~~i~~i 185 (368)
||+|||++|++|||+|+|||||||||||+||++|||| +||+|+|.+||.+||++|||||||+|||+|+|+.||+|+++|
T Consensus 66 vssGlR~iia~LIr~~~idvvVTTgg~l~hDi~~~lg~~~~~G~~~~dD~~Lr~~gi~RIgnv~vp~e~y~~~E~~i~~i 145 (318)
T COG1899 66 VSSGLREIIADLIRNGLIDVVVTTGGNLDHDIIKALGGPHYCGSFEVDDVELREEGINRIGNVFVPNEEYEVFEEFIREI 145 (318)
T ss_pred cchhHHHHHHHHHHcCCeEEEEecCCchhHHHHHHcCCCeeccCcCCCHHHHHHhccccccceecChHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998 999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcccCcccCHHHHHHHhccccC-CCchHHHHHHHCCCceecCCCCchhHHHHHHHhHhc-CCCcEeehHHHHH
Q 017671 186 FDQMLKEQNEEEISWTPSKVIARLGKEIN-DESSYLYWAYKNNIPVFCPGLTDGSLGDMLYFHSFR-SPGLIIDIVQDIR 263 (368)
Q Consensus 186 l~~l~~~q~~~~~~~t~~e~~~~lG~~i~-~e~Sil~~A~k~~VPVf~Pa~tDgsiG~~l~~~~~~-~~~~~~D~v~D~~ 263 (368)
+++|...++ .||++||+|++|++|+ +|+|||||||||||||||||++|||+|++||+|+++ ++.|.||+++|++
T Consensus 146 ~~~l~~~~~----~~s~~efi~elGk~l~~~e~SiL~~A~~~~VPIf~Pai~DssiG~~L~~~~~~~~~~l~iD~~~D~~ 221 (318)
T COG1899 146 LEKLLGIKK----EWSTREFIYELGKRLNDDESSILYTAAKNGVPIFCPAITDSSIGDMLWFHREEQGSDLKIDIVEDVH 221 (318)
T ss_pred HHHhhhccc----cccHHHHHHHHHhhhCcccchHHHHHHHcCCCEEcCCcccchHHHHHHHHHhcCCCeEEEeHHHhHH
Confidence 999987655 3999999999999999 799999999999999999999999999999999985 6689999999999
Q ss_pred HHHHHHhhcCCCceeEEEEcCCCchhhhhhcccccCCceEEEEEecCCCCCCCCCCCCccchhhcccccCCCCcEEEEee
Q 017671 264 AINGEAVHASPRKTGLIILGGGLPKHHICNANMMRNGADYAVFINTAQEFDGSDSGARPDEAVSWGKIRGSAKTVKVHCD 343 (368)
Q Consensus 264 ~l~~i~~~s~~~~~G~iilGGGVpKh~i~~~~l~r~G~DYaVqItta~e~dGslSGA~p~EAiSWGKi~~~a~~v~V~~D 343 (368)
+|+++++++ +++|+||+||||||||+|||||+|+|+|||||||||+|+|||||||||+||+|||||+++++.|+||||
T Consensus 222 ~l~di~~~a--~ktgaiilGGGvpKh~~i~~~l~r~g~DYAV~ITta~~~dGsLSGA~~~EAvSWgKI~~~a~~V~v~~D 299 (318)
T COG1899 222 ELNDIVFNA--EKTGAIILGGGVPKHHIIQANLFRGGLDYAVQITTARPYDGSLSGATPEEAVSWGKIKPDAKYVTVYGD 299 (318)
T ss_pred HHHHHHhhc--cceeEEEECCCccHHHHHHHHHhcCccceEEEEecCCCCCCCcCCCChHHcccccccCCCCceEEEEee
Confidence 999999999 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHhccc
Q 017671 344 ATIAFPLLVAETFASRR 360 (368)
Q Consensus 344 ATIv~PLlva~~~~~~~ 360 (368)
|||+||||++++|.+..
T Consensus 300 ATi~lPll~a~~~~~~~ 316 (318)
T COG1899 300 ATIVLPLLVAALLSRCG 316 (318)
T ss_pred hhhHHHHHHHHHHhhcC
Confidence 99999999999999864
No 7
>PRK00805 putative deoxyhypusine synthase; Provisional
Probab=100.00 E-value=2.5e-115 Score=854.46 Aligned_cols=304 Identities=30% Similarity=0.534 Sum_probs=290.6
Q ss_pred ccccccccCCCCCHHHHHHHHhhcCcccccHHHHHHHHHHHHhccccCCCCCcccccccCCccccccccceEEEcccccc
Q 017671 27 TKIEGYDFNQGVNYSQLLKSMVSTGFQASNFGDAIEVVNQMLDWRLADEVIPEDCDERERDPEYRKSVRCKVFLGFTSNL 106 (368)
Q Consensus 27 ~~V~g~d~~~~~~~~~L~~~~~~~GFqA~~l~~A~~i~~~M~~~~~~d~~~~~~~~~~~~~~~~~~~~~~tIfL~~tgnm 106 (368)
.+|+++++++. ++++|+++|.++||||++|++|++|+++|++ | .+|+|||||||||
T Consensus 2 ~~v~~~~i~~~-~~~~lv~~~~~~gF~A~~l~~A~~i~~~Ml~----d-------------------~~~~ifL~~tg~m 57 (329)
T PRK00805 2 KPTVPIEVKER-SISELLDAMADTGFQGRKLGESVRVWTEMLK----D-------------------PDNTIFMGLSGAM 57 (329)
T ss_pred CCCcCcCcCCC-CHHHHHHHHHHhCccHHHHHHHHHHHHHHHh----C-------------------CCCeEEEEeccch
Confidence 46999999766 9999999999999999999999999999996 4 5799999999999
Q ss_pred chhhhHHHHHHHHhcCceeEEEeCCCchhHHHHHhhc-CccccCCCCCchhHHhCCCcceeeeeecCccHHHHHHHHHHH
Q 017671 107 ISSGVRDTVRYLVQHHMVDVVVTTAGGIEEDLVKCLA-PTFKGDFALPGAYLRSKGLNRIGNLLVPNDNYCKFEDWIIPI 185 (368)
Q Consensus 107 vssGlr~~i~~Li~~~~VD~IVtTgg~lehDi~~~l~-~~y~G~~~~dd~~Lr~~ginRigdv~ip~e~y~~~E~~i~~i 185 (368)
+|||||++|++|||+|+||+|||||||||||++||+| +||+|+|.+||.+||++||||||||+||||+|+.||+|+++|
T Consensus 58 vsaGlr~~i~~Li~~g~VD~iVTTgani~hD~~~~lg~~~y~g~f~~dd~~Lr~~ginRIgdv~ip~e~y~~~E~~i~~i 137 (329)
T PRK00805 58 VPAGMRKIIKWLIRNRYVDVLVSTGANIFHDIHEALGFKHYKGSHHVDDEELFKEGIDRIYDVFAYEEEFRKADNLIAEF 137 (329)
T ss_pred HHHHHHHHHHHHHHcCCeeEEEeCCCchHHHHHHHcCCCeeccCCCCCHHHHHHcCCCcccccccCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999997 999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcccCcccCHHHHHHHhccccCC--CchHHHHHHHCCCceecCCCCchhHHHHHHHhHhcCCCcEeehHHHHH
Q 017671 186 FDQMLKEQNEEEISWTPSKVIARLGKEIND--ESSYLYWAYKNNIPVFCPGLTDGSLGDMLYFHSFRSPGLIIDIVQDIR 263 (368)
Q Consensus 186 l~~l~~~q~~~~~~~t~~e~~~~lG~~i~~--e~Sil~~A~k~~VPVf~Pa~tDgsiG~~l~~~~~~~~~~~~D~v~D~~ 263 (368)
++++.++| +|||+||+++||++|++ ++|||||||||||||||||++|||+|+++|+|+++++++.+|+++|++
T Consensus 138 l~~~~~~~-----~~s~~e~i~~lGk~i~~~~~~Sil~~Ayk~~VPVf~Pa~~DssiG~~l~~~~~~~~~~~iD~~~D~~ 212 (329)
T PRK00805 138 AETLPGFK-----SYSSREFLYLLGKWLNEKDIDSIVAAAYRANVPIFVPALCDSSIGIGLVIARRRGHRVVIDQIKDVD 212 (329)
T ss_pred HHHhccCC-----CccHHHHHHHHHHhhcccCcchHHHHHHHcCCCEEcCCcchhhhhHHHHHHhccCCceeeeHHHHHH
Confidence 99886432 69999999999999985 499999999999999999999999999999988765579999999999
Q ss_pred HHHHHHhhcCCCceeEEEEcCCCchhhhhhcccc-------cCCceEEEEEecCCCCCCCCCCCCccchhhcccccCCCC
Q 017671 264 AINGEAVHASPRKTGLIILGGGLPKHHICNANMM-------RNGADYAVFINTAQEFDGSDSGARPDEAVSWGKIRGSAK 336 (368)
Q Consensus 264 ~l~~i~~~s~~~~~G~iilGGGVpKh~i~~~~l~-------r~G~DYaVqItta~e~dGslSGA~p~EAiSWGKi~~~a~ 336 (368)
++++++++| +++|+|||||||||||+||+|++ |+|+||+||||||+|+|||||||||+||||||||+++++
T Consensus 213 ~l~~~~~~a--~~~G~iilGGGvpKh~~~~~~l~~~~~~~~~~G~dYaVqItta~~~dGslSGA~~~EAvSWGKv~~~a~ 290 (329)
T PRK00805 213 EITEIVEKS--KKTGVIYIGGGVPKNFIQQTEVIASILGEDVEGHEYAIQYTTDAPHWGGLSGCTFEEAVSWGKVAPKAK 290 (329)
T ss_pred HHHHHHhcc--CceeEEEECCchhHhHHHHHHHHHHhhccCCCCCcEEEEEeCCCCCcccccCCChHHhhhcCCcCCCCc
Confidence 999999999 99999999999999999999998 569999999999999999999999999999999999999
Q ss_pred cEEEEeehhhhHHHHHHHHHhcccc
Q 017671 337 TVKVHCDATIAFPLLVAETFASRRN 361 (368)
Q Consensus 337 ~v~V~~DATIv~PLlva~~~~~~~~ 361 (368)
.|+|||||||+||||++++|++..+
T Consensus 291 ~v~V~~DATI~~PLl~a~~~~~~~~ 315 (329)
T PRK00805 291 KVQVFVDATIALPLVAHALIEKGIK 315 (329)
T ss_pred eEEEEEehhhHHHHHHHHHHHhhhh
Confidence 9999999999999999999998763
No 8
>PRK02492 deoxyhypusine synthase-like protein; Provisional
Probab=100.00 E-value=1.2e-112 Score=840.53 Aligned_cols=308 Identities=28% Similarity=0.476 Sum_probs=289.9
Q ss_pred CccccccccCCCCCHHHHHHHHhhcCcccccHHHHHHHHHHHHhccccCCCCCcccccccCCccccccccceEEEccccc
Q 017671 26 GTKIEGYDFNQGVNYSQLLKSMVSTGFQASNFGDAIEVVNQMLDWRLADEVIPEDCDERERDPEYRKSVRCKVFLGFTSN 105 (368)
Q Consensus 26 ~~~V~g~d~~~~~~~~~L~~~~~~~GFqA~~l~~A~~i~~~M~~~~~~d~~~~~~~~~~~~~~~~~~~~~~tIfL~~tgn 105 (368)
.++|+++||++ +++++|+++|.++||||++|++|++|+++|++ | .+||||||||||
T Consensus 13 ~~~v~~~~~~~-~~v~~Lv~~~~~~gF~A~~L~~A~~i~~~Ml~----~-------------------~~~~ifL~~tga 68 (347)
T PRK02492 13 QEPVEHIDIKS-FDAVPIIDAMGKMAFQSRDLARAADIYDMMLQ----D-------------------KECAVILTLAGS 68 (347)
T ss_pred cCCCcCCCCCC-CCHHHHHHHHHHhCccHHHHHHHHHHHHHHHh----C-------------------CCCeEEEEeccc
Confidence 35799999985 69999999999999999999999999999997 4 479999999999
Q ss_pred cchhhhHHHHHHHHhcCceeEEEeCCCch-hHHHHHhhc-CccccCCCCCchhHHhCCCcceeeeeecCccHHHHHHHHH
Q 017671 106 LISSGVRDTVRYLVQHHMVDVVVTTAGGI-EEDLVKCLA-PTFKGDFALPGAYLRSKGLNRIGNLLVPNDNYCKFEDWII 183 (368)
Q Consensus 106 mvssGlr~~i~~Li~~~~VD~IVtTgg~l-ehDi~~~l~-~~y~G~~~~dd~~Lr~~ginRigdv~ip~e~y~~~E~~i~ 183 (368)
|+|||||++|++|||+|+||+|||||||+ +||++||+| +||+|+|.+||.+||++||||||||+||||+|+.||+|++
T Consensus 69 mvsaGlr~~i~~Li~~~~VD~iVTTganl~eeD~~k~~g~~~y~G~f~~dd~~Lr~~ginRIgdv~ip~e~y~~~E~~v~ 148 (347)
T PRK02492 69 LSSAGCMQVYIDLVRNNMVDAIVATGANIVDQDFFEALGFKHYQGSPFVDDAVLRDLYIDRIYDTYIDEEELQVCDHTIA 148 (347)
T ss_pred hHHHHHHHHHHHHHHcCCeeEEEECCCCchHHHHHHHcCCCeecCCCCCCHHHHHHcCCCcccccccChHHHHHHHHHHH
Confidence 99999999999999999999999999996 999999997 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcccCcccCHHHHHHHhccccCC----CchHHHHHHHCCCceecCCCCchhHHHHHHHhHhcCC--CcEee
Q 017671 184 PIFDQMLKEQNEEEISWTPSKVIARLGKEIND----ESSYLYWAYKNNIPVFCPGLTDGSLGDMLYFHSFRSP--GLIID 257 (368)
Q Consensus 184 ~il~~l~~~q~~~~~~~t~~e~~~~lG~~i~~----e~Sil~~A~k~~VPVf~Pa~tDgsiG~~l~~~~~~~~--~~~~D 257 (368)
++|+++.. ..||++||+|++|++|++ |+|||||||||||||||||++|||+|+++|+|+++++ ++.||
T Consensus 149 ~il~~~~~------~~~s~~e~~~~lGk~i~~~~~~e~Sil~~Ayk~~VPIf~Pa~tDgsiG~~l~~~~~~~~~~~l~iD 222 (347)
T PRK02492 149 EIANSLEP------RPYSSREFIWEMGKYLEENAKKENSLVQKAYEKGVPIFCPAFSDSSAGFGLVHHQVKNPDPHVTID 222 (347)
T ss_pred HHHHHhhc------cCCCHHHHHHHHHHHHHhcCCCcchHHHHHHHcCCCEECCCchhhHHHHHHHHHHhhcCCCceEEe
Confidence 99998742 259999999999999974 9999999999999999999999999999999999853 69999
Q ss_pred hHHHHHHHHHHHhhcCCCceeEEEEcCCCchhhhhhcccccC--C-----ceEEEEEecCCCCCCCCCCCCccchhhccc
Q 017671 258 IVQDIRAINGEAVHASPRKTGLIILGGGLPKHHICNANMMRN--G-----ADYAVFINTAQEFDGSDSGARPDEAVSWGK 330 (368)
Q Consensus 258 ~v~D~~~l~~i~~~s~~~~~G~iilGGGVpKh~i~~~~l~r~--G-----~DYaVqItta~e~dGslSGA~p~EAiSWGK 330 (368)
+++|+++|+++++++ +++|+|||||||||||+|||+++++ | +||+||||||+|+|||||||||+|||||||
T Consensus 223 ~~~D~~~l~~~~~~a--k~~G~iilGGGvpKh~~~~~~~~~~~~g~~~~~~dYaVqItta~~~dGslSGA~p~EAvSWGK 300 (347)
T PRK02492 223 SVKDFRELTDIKIAA--GTTGLFMIGGGVPKNFAQDTVVAAEVLGYEVSMHKYAVQITVADVRDGALSSSTLKEASSWGK 300 (347)
T ss_pred HHHHHHHHHHHHhcc--CceEEEEECCchhhhHHHHHHHHHHhhcCCCCcCCEEEEEeCCCCCCCcccCCChhhhccccc
Confidence 999999999999999 9999999999999999999887776 5 899999999999999999999999999999
Q ss_pred ccCCCCcEEEEeehhhhHHHHHHHHHhccccccccc
Q 017671 331 IRGSAKTVKVHCDATIAFPLLVAETFASRRNKFVET 366 (368)
Q Consensus 331 i~~~a~~v~V~~DATIv~PLlva~~~~~~~~~~~~~ 366 (368)
|+ ++++|+|||||||+||||++|+|++..|++|..
T Consensus 301 v~-~~~~v~V~~DATI~~PLl~a~~~~~~~~~~~~~ 335 (347)
T PRK02492 301 VD-TAYEQMVFAEATSALPLIASYAYHKGNWEGREA 335 (347)
T ss_pred cC-CCceEEEEEehhhHHHHHHHHHHHhhccccCCc
Confidence 99 568899999999999999999999988665543
No 9
>PF01916 DS: Deoxyhypusine synthase; InterPro: IPR002773 Eukaryotic initiation factor 5A (eIF-5A), now considered to be an elongation factor (see IPR001884 from INTERPRO), contains an unusual amino acid, hypusine [N epsilon-(4-aminobutyl-2-hydroxy)lysine]. The first step in the post-translational formation of hypusine is catalysed by the enzyme deoxyhypusine synthase (DS) 2.5.1.46 from EC. The enzyme catalyses the following reaction: Spermidine + [eIF-5A]-lysine = 1,3-diaminopropane + [eIF-5A]-deoxyhypusine The modified version of eIF-5A, and DS, are required for eukaryotic cell proliferation []. The structure is known for this enzyme [] in complex with its NAD+ cofactor.; GO: 0008612 peptidyl-lysine modification to hypusine; PDB: 1RQD_A 1RLZ_A 1DHS_A 1ROZ_B.
Probab=100.00 E-value=2e-113 Score=833.72 Aligned_cols=296 Identities=49% Similarity=0.830 Sum_probs=244.9
Q ss_pred HHHHHHHhhcCcccccHHHHHHHHHHHHhccccCCCCCcccccccCCccccccccceEEEccccccchhhhHHHHHHHHh
Q 017671 41 SQLLKSMVSTGFQASNFGDAIEVVNQMLDWRLADEVIPEDCDERERDPEYRKSVRCKVFLGFTSNLISSGVRDTVRYLVQ 120 (368)
Q Consensus 41 ~~L~~~~~~~GFqA~~l~~A~~i~~~M~~~~~~d~~~~~~~~~~~~~~~~~~~~~~tIfL~~tgnmvssGlr~~i~~Li~ 120 (368)
++|+++|+++||||++|++|++++++|++++ |.+.+|||||||||||+|||||++|++|||
T Consensus 2 ~~Li~~~~~~gF~a~~l~~A~~i~~~M~~~~-------------------~~~~~~tifLt~aGamvsaGLr~ii~~LIr 62 (299)
T PF01916_consen 2 EELIESMSKTGFQARNLGEAAEILKEMLSDD-------------------RSKQDCTIFLTFAGAMVSAGLRGIIADLIR 62 (299)
T ss_dssp HHHHHGGGGT-HHHHHHHHHHHHHHHHHHHH-------------------S---SSEEEEEE-THHHHSTHHHHHHHHHH
T ss_pred hHHHHHHHhcCccHHHHHHHHHHHHHHHhhc-------------------ccccCCeEEEEcccccccccHHHHHHHHHh
Confidence 6899999999999999999999999999932 333679999999999999999999999999
Q ss_pred cCceeEEEeCCCchhHHHHHhhcCccccCCCCCchhHHhCCCcceeeeeecCccHHHHHHHHHHHHHHHHHhhcccCccc
Q 017671 121 HHMVDVVVTTAGGIEEDLVKCLAPTFKGDFALPGAYLRSKGLNRIGNLLVPNDNYCKFEDWIIPIFDQMLKEQNEEEISW 200 (368)
Q Consensus 121 ~~~VD~IVtTgg~lehDi~~~l~~~y~G~~~~dd~~Lr~~ginRigdv~ip~e~y~~~E~~i~~il~~l~~~q~~~~~~~ 200 (368)
+|+||+||||||||+||++||+|++|+|+|.+||.+||++|||||||||||||+|+.+|+|++++++++.++|++.+.+|
T Consensus 63 ~g~Vd~IvtTganl~hDi~~~lg~~~~g~~~~dD~~L~~~gi~Ri~dv~ipee~~~~~E~~i~~il~~~~~~~~~~~~~~ 142 (299)
T PF01916_consen 63 NGYVDVIVTTGANLEHDIIEALGHHYYGDFNADDAELREKGINRIYDVFIPEENYRKFEDFIREILEELEEEQKKEGRPW 142 (299)
T ss_dssp TT--SEEEE-HHHHHHHHHTTTS--EE--TT--HHHHHHTTEEEETTEEEEHHHHHHHHHHHHHHHHHHHHHHHHS----
T ss_pred CCceEEEEeCCCchHHHHHHHhCcceecCccCChHHHHHcCCcchheecccHHHHHHHHHHHHHHHHHHHHHhhccCceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988877677899
Q ss_pred CHHHHHHHhccccCCCchHHHHHHHCCCceecCCCCchhHHHHHHHhHhcC--CCcEeehHHHHHHHHHHHhhcCCCcee
Q 017671 201 TPSKVIARLGKEINDESSYLYWAYKNNIPVFCPGLTDGSLGDMLYFHSFRS--PGLIIDIVQDIRAINGEAVHASPRKTG 278 (368)
Q Consensus 201 t~~e~~~~lG~~i~~e~Sil~~A~k~~VPVf~Pa~tDgsiG~~l~~~~~~~--~~~~~D~v~D~~~l~~i~~~s~~~~~G 278 (368)
||+||+++||++|++|+|||||||||||||||||++|||+|+++|+|++++ .++.+|+++|+++++++++.+ +++|
T Consensus 143 ~~~e~~~~lG~~i~~e~Sil~~A~~~~vPVf~Pa~~DssiG~~~~~~~~~~~~~~~~iD~~~D~~~l~~~~~~~--~~~G 220 (299)
T PF01916_consen 143 SPSELIYELGKRINDEDSILYAAYKNNVPVFCPAITDSSIGLQLAMHRQKGKPSKLIIDIVADMRELADIVFKA--KKTG 220 (299)
T ss_dssp -HHHHHHHHHHHH--TT-HHHHHHHTT--EE-TTTTSSHHHHHHHHHHHHS-TT-----SHHHHHHHHHHHHT---SSEE
T ss_pred cHHHHHHHHHhhcCCCCcHHHHHHHcCCCEECCCCcchHHHHHHHHHHHhcCCCceeecHHHHHHHHHHHHhhC--Ccee
Confidence 999999999999999999999999999999999999999999999999887 469999999999999999999 9999
Q ss_pred EEEEcCCCchhhhhhcccccCCceEEEEEecCCCCCCCCCCCCccchhhcccccCCCCcEEEEeehhhhHHHHHHHHHh
Q 017671 279 LIILGGGLPKHHICNANMMRNGADYAVFINTAQEFDGSDSGARPDEAVSWGKIRGSAKTVKVHCDATIAFPLLVAETFA 357 (368)
Q Consensus 279 ~iilGGGVpKh~i~~~~l~r~G~DYaVqItta~e~dGslSGA~p~EAiSWGKi~~~a~~v~V~~DATIv~PLlva~~~~ 357 (368)
+|||||||||||+||++|+|+|+||+|||||++|+|||||||||+||||||||++++++|+|||||||+||||++|+|+
T Consensus 221 ~~~iGGGvpK~~~~~~~l~~~G~dYavqItta~~~~GslSGA~~~EaiSWGKi~~~~~~v~V~~DATIv~PLi~~~~l~ 299 (299)
T PF01916_consen 221 AIIIGGGVPKHFIIQANLFRGGLDYAVQITTAQESDGSLSGATPEEAISWGKIKPDAKSVTVYGDATIVLPLIVAAVLA 299 (299)
T ss_dssp EEEES-THHHHHHHHHHHTTTSBSEEEEEE---STT--STT--HHHHHHHTSB-TT---EEEES-HHHHHHHHHHHTGG
T ss_pred EEEECCchhHhHHHhHHhhhCCccEEEEEecCCCccccccCCChhhhhhcccccCCCceEEEEEehHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999985
No 10
>PRK00770 deoxyhypusine synthase-like protein; Provisional
Probab=100.00 E-value=6.2e-108 Score=816.46 Aligned_cols=305 Identities=26% Similarity=0.413 Sum_probs=289.1
Q ss_pred ccccccccCCCCCHHHHHHHHhhcCcccccHHHHHHHHH-HHHhccccCCCCCcccccccCCccccccccceEEEccccc
Q 017671 27 TKIEGYDFNQGVNYSQLLKSMVSTGFQASNFGDAIEVVN-QMLDWRLADEVIPEDCDERERDPEYRKSVRCKVFLGFTSN 105 (368)
Q Consensus 27 ~~V~g~d~~~~~~~~~L~~~~~~~GFqA~~l~~A~~i~~-~M~~~~~~d~~~~~~~~~~~~~~~~~~~~~~tIfL~~tgn 105 (368)
++|+++++++++|+++|+++|.++ |||++|++|+++++ +|++ .+|+||||||||
T Consensus 7 ~~v~~~~i~~~~sv~~ll~~~~~~-F~A~~L~~A~~il~~~m~~------------------------~~~tvfLtltga 61 (384)
T PRK00770 7 KKIAPIPISPNISVVDLIDVYFTA-YNSARLREACQLLAQRMID------------------------DGVTVGLTLSGA 61 (384)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHH-hchHHHHHHHHHHHHHHHh------------------------cCCcEEEEeccc
Confidence 469999999999999999999998 99999999999999 9996 369999999999
Q ss_pred cchhhhH-HHHHHHHhcCceeEEEeCCCchhHHHHHhhc-CccccCCCCCchhHHhCCCcceeeeeecCccHHHHHHHHH
Q 017671 106 LISSGVR-DTVRYLVQHHMVDVVVTTAGGIEEDLVKCLA-PTFKGDFALPGAYLRSKGLNRIGNLLVPNDNYCKFEDWII 183 (368)
Q Consensus 106 mvssGlr-~~i~~Li~~~~VD~IVtTgg~lehDi~~~l~-~~y~G~~~~dd~~Lr~~ginRigdv~ip~e~y~~~E~~i~ 183 (368)
|+||||| ++|++|||+|+||+||||||||+||+++||| +||+|+|.+||.+||++|||||||||||+++|+.+|++++
T Consensus 62 misaGLr~~ii~~LIr~g~VD~IVTTGAnl~hD~~~alg~~~y~G~~~~dd~~Lr~~GinRI~dv~ip~e~~~~~e~~l~ 141 (384)
T PRK00770 62 MTPAGFGVSALAPLIEAGFIDWIISTGANLYHDLHYALGLPLFAGHPFVDDVKLREEGIIRIYDIIFDYDVLLETDAFIR 141 (384)
T ss_pred hhhhhcChHHHHHHHHcCCccEEEcCCccHHHHHHHHhCCCcccCCCCCCHHHHHHcCCCcccccCcChHHHHHHHHHHH
Confidence 9999999 9999999999999999999999999999996 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcccCcccCHHHHHHHhccccC--------CCchHHHHHHHCCCceecCCCCchhHHHHHHHhHhcCCCcE
Q 017671 184 PIFDQMLKEQNEEEISWTPSKVIARLGKEIN--------DESSYLYWAYKNNIPVFCPGLTDGSLGDMLYFHSFRSPGLI 255 (368)
Q Consensus 184 ~il~~l~~~q~~~~~~~t~~e~~~~lG~~i~--------~e~Sil~~A~k~~VPVf~Pa~tDgsiG~~l~~~~~~~~~~~ 255 (368)
+++++.. .+ .+|||+||+++||++|+ +|+|||||||||||||||||++|||+|+++|+|+++++++.
T Consensus 142 ~il~~~~-~~----~~~s~~E~i~~LGk~i~~~~~~~~~~e~SiL~~Ayk~~IPVf~Pa~~DssiG~~l~~~~~~~~~~~ 216 (384)
T PRK00770 142 EILKAEP-FQ----KRMGTAEFHYLLGKYVREVEKQLGVPHKSLLATAYEYGVPIYTSSPGDSSIGMNVAALALEGSELV 216 (384)
T ss_pred HHHHhcc-cc----CCccHHHHHHHHHHHhhhhcccCCCCcccHHHHHHHcCCCEECCCchHhHHHHHHHHHHhcCCccc
Confidence 9998642 22 36999999999999987 49999999999999999999999999999999999877899
Q ss_pred eehHHHHHHHHHHHhhcCCCce----eEEEEcCCCchhhhhhc--------ccccCCceEEEEEecCCCCCCCCCCCCcc
Q 017671 256 IDIVQDIRAINGEAVHASPRKT----GLIILGGGLPKHHICNA--------NMMRNGADYAVFINTAQEFDGSDSGARPD 323 (368)
Q Consensus 256 ~D~v~D~~~l~~i~~~s~~~~~----G~iilGGGVpKh~i~~~--------~l~r~G~DYaVqItta~e~dGslSGA~p~ 323 (368)
+|+++|+++++++++++ +++ |+|||||||||||+||| |++++|+||+||||||+|+|||||||||+
T Consensus 217 iD~v~D~~~~~~i~~~a--~~~~~~~G~iilGGGvpKh~~~~~~~~~~~il~l~~~G~dYaVqItta~~~dGslSGA~p~ 294 (384)
T PRK00770 217 LDPAIDVNETAAIAYNA--KESEGKSGAVILGGGSPKNFLLQTQPQIHEVLGLEERGHDYFIQITDARPDTGGLSGATPS 294 (384)
T ss_pred cchhcCHHHHHHHHHhc--CCCCCCceEEEECCchhhhhHhhhHHHHHHHhhccCCcccEEEEEeCCCCCCCcccCCChh
Confidence 99999999999999998 766 99999999999999999 45599999999999999999999999999
Q ss_pred chhhcccccCCC--CcEEEEeehhhhHHHHHHHHHhcccccc
Q 017671 324 EAVSWGKIRGSA--KTVKVHCDATIAFPLLVAETFASRRNKF 363 (368)
Q Consensus 324 EAiSWGKi~~~a--~~v~V~~DATIv~PLlva~~~~~~~~~~ 363 (368)
||||||||++++ +.|+|||||||+||||++++|++...|+
T Consensus 295 EAvSWGKv~~~a~~~~v~Vy~DATI~~PLl~a~~l~~~~~r~ 336 (384)
T PRK00770 295 EAVSWGKVDPDELPDTVVCYTDSTIALPLLTAYALNTCKPRP 336 (384)
T ss_pred hhhccCCCCcccCCccEEEEEehhhHHHHHHHHHHhhcCCCc
Confidence 999999999999 8999999999999999999999885444
No 11
>COG1915 Uncharacterized conserved protein [Function unknown]
Probab=94.47 E-value=0.17 Score=50.87 Aligned_cols=204 Identities=26% Similarity=0.288 Sum_probs=114.6
Q ss_pred ccceEEEccccccchhhhHHHHHHHHhcCceeEEEeCCCchhHHHHHhhcCccccCCCCCchhHHhCCCcceeeeeecCc
Q 017671 94 VRCKVFLGFTSNLISSGVRDTVRYLVQHHMVDVVVTTAGGIEEDLVKCLAPTFKGDFALPGAYLRSKGLNRIGNLLVPND 173 (368)
Q Consensus 94 ~~~tIfL~~tgnmvssGlr~~i~~Li~~~~VD~IVtTgg~lehDi~~~l~~~y~G~~~~dd~~Lr~~ginRigdv~ip~e 173 (368)
++.+|.+.--=+.+-+|-+..++.|||.||||++..--|--.||+--++=-+-+|----.+...+ |=||-
T Consensus 199 kgGkIvvv~GPaviHtg~~~~la~lIR~GyV~~L~~GNAlA~HDIE~~l~GTSLGvD~~rG~~V~--gGhrH-------- 268 (415)
T COG1915 199 KGGKIVVVAGPAVIHTGAAQHLAHLIREGYVDALLAGNALAVHDIEQALMGTSLGVDMKRGEPVR--GGHRH-------- 268 (415)
T ss_pred cCCcEEEEecCeEEecCcHHHHHHHHHhhhHHHhhcCCceeechhHHHhhccccceecccCcccC--CCchh--------
Confidence 46788888888899999999999999999999998766668999988764343332111122221 11110
Q ss_pred cHHHHHHHHHHHHHHHHHhhcccCcccCHHHHHHHhccccCCCchHHHHHHHCCCceecCCCCchhHHHHHHHhHhcC--
Q 017671 174 NYCKFEDWIIPIFDQMLKEQNEEEISWTPSKVIARLGKEINDESSYLYWAYKNNIPVFCPGLTDGSLGDMLYFHSFRS-- 251 (368)
Q Consensus 174 ~y~~~E~~i~~il~~l~~~q~~~~~~~t~~e~~~~lG~~i~~e~Sil~~A~k~~VPVf~Pa~tDgsiG~~l~~~~~~~-- 251 (368)
.+. .++.|.. .=+.++- +-+-| =.++|.|.|-|||||-..-| ||=+ .+
T Consensus 269 Hl~----~In~i~r-----------~G~ir~a---VE~Gi-ik~GvMYECvkNniPfvLAG----SIRD-------DGPl 318 (415)
T COG1915 269 HLK----AINEIRR-----------AGGIRKA---VEKGI-IKSGVMYECVKNNIPFVLAG----SIRD-------DGPL 318 (415)
T ss_pred HHH----HHHHHHH-----------cccHHHH---HHhcc-cccceeHhhhhcCCCeEEec----cccc-------CCCC
Confidence 011 1111110 0011111 11111 15799999999999965433 2211 11
Q ss_pred CCcEeehHHHHHHHHHHHhhcCCCceeEEEEcCCCchhhhhhcccccCCce-EEEEEecCCCCCCCCCCCCccchhhccc
Q 017671 252 PGLIIDIVQDIRAINGEAVHASPRKTGLIILGGGLPKHHICNANMMRNGAD-YAVFINTAQEFDGSDSGARPDEAVSWGK 330 (368)
Q Consensus 252 ~~~~~D~v~D~~~l~~i~~~s~~~~~G~iilGGGVpKh~i~~~~l~r~G~D-YaVqItta~e~dGslSGA~p~EAiSWGK 330 (368)
|+...|+++--.++.+..-.+ .=++|+- ..=|-|---|++-.+.. .+|-||.|...-=|+-|.
T Consensus 319 Pdvitdvm~Aq~~m~~~l~g~----dmvlMls--tMLHSIa~GNllPs~VKtiCVDiNPavVTKL~DRGs---------- 382 (415)
T COG1915 319 PDVITDVMEAQEEMREHLQGA----DMVLMLS--TMLHSIAVGNLLPSGVKTICVDINPAVVTKLSDRGS---------- 382 (415)
T ss_pred chHHHHHHHHHHHHHHHhccC----ccHHHHH--HHHHHHhhcCcchhhceEEEEecChHHheecccCCc----------
Confidence 233444444333333322111 1111110 01133444466665654 778899887764444432
Q ss_pred ccCCCCcEEEEeehhhhHHHHHHHHHh
Q 017671 331 IRGSAKTVKVHCDATIAFPLLVAETFA 357 (368)
Q Consensus 331 i~~~a~~v~V~~DATIv~PLlva~~~~ 357 (368)
...+-|.+|.-+.||||+..+-.
T Consensus 383 ----~qavgvVTDVGlFlplL~~elkk 405 (415)
T COG1915 383 ----SQAVGVVTDVGLFLPLLVRELKK 405 (415)
T ss_pred ----cceeEEEeehhHhHHHHHHHHHH
Confidence 46788999999999999987643
No 12
>TIGR00300 conserved hypothetical protein TIGR00300. All members of the family come from genome projects. A partial length search brings in two plant lysine-ketoglutarate reductase/saccharopine dehydrogenase bifunctional enzymes hitting the N-terminal region of the family.
Probab=91.56 E-value=1.3 Score=45.78 Aligned_cols=199 Identities=21% Similarity=0.248 Sum_probs=118.9
Q ss_pred cceEEEccccccchhhhHHHHHHHHhcCceeEEEeCCCchhHHHHHhhcCccccCCCCCchhHHhCCCcceeeeeecCcc
Q 017671 95 RCKVFLGFTSNLISSGVRDTVRYLVQHHMVDVVVTTAGGIEEDLVKCLAPTFKGDFALPGAYLRSKGLNRIGNLLVPNDN 174 (368)
Q Consensus 95 ~~tIfL~~tgnmvssGlr~~i~~Li~~~~VD~IVtTgg~lehDi~~~l~~~y~G~~~~dd~~Lr~~ginRigdv~ip~e~ 174 (368)
+.+|.+-.-=+.+-+|-|..++.|||+||||++.+==|--.||+=.+|=.+-+|-- + -.-.-+|.-+
T Consensus 201 gG~Iv~V~GPAvvhtga~~ala~Lir~GYV~~LlaGNAlAtHDiE~al~GTsLG~d------i-------~~~~~v~~GH 267 (407)
T TIGR00300 201 GGKIGVVAGPAVIHTGAAQALAHLIREGYVDALLAGNALAVHDIEQALYGTSLGVD------I-------QRGIPVPGGH 267 (407)
T ss_pred CCCEEEEecCeEEecCcHHHHHHHHHcCcccEEecchHHHHhhhhHhhhCcccccc------c-------cccccCCCch
Confidence 46666666667789999999999999999999997666689999887744444311 1 1112356666
Q ss_pred HHHHHHHHHHHHHHHHHhhcccCcccCHHHHHHHhccccCCCchHHHHHHHCCCceecCCCCchhHHHHHHHhHhcC--C
Q 017671 175 YCKFEDWIIPIFDQMLKEQNEEEISWTPSKVIARLGKEINDESSYLYWAYKNNIPVFCPGLTDGSLGDMLYFHSFRS--P 252 (368)
Q Consensus 175 y~~~E~~i~~il~~l~~~q~~~~~~~t~~e~~~~lG~~i~~e~Sil~~A~k~~VPVf~Pa~tDgsiG~~l~~~~~~~--~ 252 (368)
|..++ .++.|.. .=|..+++..-. =.++|+|+|-|||||...-| || +..+ |
T Consensus 268 ~~Hl~-~IN~irr-----------aGSI~~aVe~G~----l~~Gimy~cvk~~VPfVLAG----SI-------RDDGPLP 320 (407)
T TIGR00300 268 RHHLK-AINSVRR-----------AGGIRDAVEQGI----IKKGVMYECVKNNIPYVLAG----SI-------RDDGPLP 320 (407)
T ss_pred HHHHH-HHHHHHH-----------cCCHHHHHHhCC----CccchHHHHHhCCCCEEEee----ec-------cCCCCCC
Confidence 65543 2333331 125555555432 26899999999999987543 22 1112 2
Q ss_pred CcEeehHHHHHHHHHHHhhcCCCceeEEEEcCCCchhhhhhcccccCC-ceEEEEEecCCCCCCCCCCCCccchhhcccc
Q 017671 253 GLIIDIVQDIRAINGEAVHASPRKTGLIILGGGLPKHHICNANMMRNG-ADYAVFINTAQEFDGSDSGARPDEAVSWGKI 331 (368)
Q Consensus 253 ~~~~D~v~D~~~l~~i~~~s~~~~~G~iilGGGVpKh~i~~~~l~r~G-~DYaVqItta~e~dGslSGA~p~EAiSWGKi 331 (368)
++.-|+.+--+.|... . ++.+++|. =..-=|-|--.|+.-.. .=|+|=||.+.. .|+
T Consensus 321 dvitDv~~AQ~amR~~---~--~~a~~vim-laTmLHSIAtGNm~Ps~v~~~cVDInp~~V----------------tKL 378 (407)
T TIGR00300 321 DVITDVVRAQSKMREL---L--QGADMVLM-LSTMLHSIAVGNLLPSGVKTICVDINPAVV----------------TKL 378 (407)
T ss_pred cchhhHHHHHHHHHHH---h--ccCCeehh-HHHHHHHHhhcccccccceEEEEECCHHHh----------------hhh
Confidence 3444544444444333 2 44454432 01122444445554433 236666775443 355
Q ss_pred cC--CCCcEEEEeehhhhHHHHHHHH
Q 017671 332 RG--SAKTVKVHCDATIAFPLLVAET 355 (368)
Q Consensus 332 ~~--~a~~v~V~~DATIv~PLlva~~ 355 (368)
.. ....+-|-+|+-..+|+|...+
T Consensus 379 ~DRGs~qa~giVTdvg~Fl~~L~~~l 404 (407)
T TIGR00300 379 SDRGSSQAVGVVTDVGLFLPLLVRQI 404 (407)
T ss_pred hccCceeEEEEEecHHHHHHHHHHHH
Confidence 32 2466889999999999997665
No 13
>cd03412 CbiK_N Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), N-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=76.50 E-value=8.8 Score=33.13 Aligned_cols=73 Identities=18% Similarity=0.229 Sum_probs=53.8
Q ss_pred cCcccccH--HHHHHHHHHHHhccccCCCCCcccccccCCccccccccceEEEccccccc----------hhhhHHHHHH
Q 017671 50 TGFQASNF--GDAIEVVNQMLDWRLADEVIPEDCDERERDPEYRKSVRCKVFLGFTSNLI----------SSGVRDTVRY 117 (368)
Q Consensus 50 ~GFqA~~l--~~A~~i~~~M~~~~~~d~~~~~~~~~~~~~~~~~~~~~~tIfL~~tgnmv----------ssGlr~~i~~ 117 (368)
+||..++- .++++-+.++++.+.+ +..|..+|||+++ .--+.+.+..
T Consensus 6 v~fGS~~~~~~~~~~~i~~~l~~~~p---------------------~~~V~~afts~~i~~~l~~~~~~~p~~~eaL~~ 64 (127)
T cd03412 6 VSFGTSYPTAEKTIDAIEDKVRAAFP---------------------DYEVRWAFTSRMIRKKLKKRGIEVDTPEEALAK 64 (127)
T ss_pred EeCCCCCHHHHHHHHHHHHHHHHHCC---------------------CCeEEEEecHHHHHHHHHhcCCCCCCHHHHHHH
Confidence 37777775 2356666677764433 4789999999886 5678899999
Q ss_pred HHhcCceeEEE-----eCCCchhHHHHHhhcC
Q 017671 118 LVQHHMVDVVV-----TTAGGIEEDLVKCLAP 144 (368)
Q Consensus 118 Li~~~~VD~IV-----tTgg~lehDi~~~l~~ 144 (368)
|.++|+=+++| .+| .-.+|+-+.+..
T Consensus 65 l~~~G~~~V~V~Pl~l~~G-~e~~di~~~v~~ 95 (127)
T cd03412 65 LAADGYTEVIVQSLHIIPG-EEYEKLKREVDA 95 (127)
T ss_pred HHHCCCCEEEEEeCeeECc-HHHHHHHHHHHH
Confidence 99999888777 454 557899887763
No 14
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=69.01 E-value=40 Score=29.50 Aligned_cols=88 Identities=17% Similarity=0.123 Sum_probs=55.8
Q ss_pred HHHHHhhc-CcccccHHH---HHHHHHHHHhccccCCCCCcccccccCCccccccccceEEEccccccc--hhhhHHHHH
Q 017671 43 LLKSMVST-GFQASNFGD---AIEVVNQMLDWRLADEVIPEDCDERERDPEYRKSVRCKVFLGFTSNLI--SSGVRDTVR 116 (368)
Q Consensus 43 L~~~~~~~-GFqA~~l~~---A~~i~~~M~~~~~~d~~~~~~~~~~~~~~~~~~~~~~tIfL~~tgnmv--ssGlr~~i~ 116 (368)
++..|-+. ||.--+++. .-++++..++ . +.. +++++|-+. ..-+++++.
T Consensus 21 iv~~~l~~~GfeVi~lg~~~s~e~~v~aa~e----~--------------------~ad-ii~iSsl~~~~~~~~~~~~~ 75 (132)
T TIGR00640 21 VIATAYADLGFDVDVGPLFQTPEEIARQAVE----A--------------------DVH-VVGVSSLAGGHLTLVPALRK 75 (132)
T ss_pred HHHHHHHhCCcEEEECCCCCCHHHHHHHHHH----c--------------------CCC-EEEEcCchhhhHHHHHHHHH
Confidence 55555555 899887774 4455555555 1 233 555566553 335888999
Q ss_pred HHHhcCceeEEEeCCCchhHHHHHhhcCccccCCCCCchhHHhCCCcceeeeee
Q 017671 117 YLVQHHMVDVVVTTAGGIEEDLVKCLAPTFKGDFALPGAYLRSKGLNRIGNLLV 170 (368)
Q Consensus 117 ~Li~~~~VD~IVtTgg~lehDi~~~l~~~y~G~~~~dd~~Lr~~ginRigdv~i 170 (368)
.|-++|.-++.|--||++..+-+ .+|++.|++|+...=-
T Consensus 76 ~L~~~g~~~i~vivGG~~~~~~~---------------~~l~~~Gvd~~~~~gt 114 (132)
T TIGR00640 76 ELDKLGRPDILVVVGGVIPPQDF---------------DELKEMGVAEIFGPGT 114 (132)
T ss_pred HHHhcCCCCCEEEEeCCCChHhH---------------HHHHHCCCCEEECCCC
Confidence 99888875766666877543322 3589999998765433
No 15
>COG0521 MoaB Molybdopterin biosynthesis enzymes [Coenzyme metabolism]
Probab=65.43 E-value=5.1 Score=37.02 Aligned_cols=22 Identities=45% Similarity=0.662 Sum_probs=18.4
Q ss_pred hHHHHHHHHhcCceeEEEeCCCc
Q 017671 111 VRDTVRYLVQHHMVDVVVTTAGG 133 (368)
Q Consensus 111 lr~~i~~Li~~~~VD~IVtTgg~ 133 (368)
++..+..++.++ +|+|+||||+
T Consensus 56 I~~~l~~~~~~~-~DvvlttGGT 77 (169)
T COG0521 56 IRATLIALIDED-VDVVLTTGGT 77 (169)
T ss_pred HHHHHHHHhcCC-CCEEEEcCCc
Confidence 456777888888 9999999995
No 16
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=64.05 E-value=21 Score=31.39 Aligned_cols=88 Identities=14% Similarity=0.255 Sum_probs=56.8
Q ss_pred HHHH-HhhcCcccccHHH---HHHHHHHHHhccccCCCCCcccccccCCccccccccceEEEccccccchh--hhHHHHH
Q 017671 43 LLKS-MVSTGFQASNFGD---AIEVVNQMLDWRLADEVIPEDCDERERDPEYRKSVRCKVFLGFTSNLISS--GVRDTVR 116 (368)
Q Consensus 43 L~~~-~~~~GFqA~~l~~---A~~i~~~M~~~~~~d~~~~~~~~~~~~~~~~~~~~~~tIfL~~tgnmvss--Glr~~i~ 116 (368)
++.. ++..||+--+||. +-++++..++. +.. ++++++=|.++ .+++++.
T Consensus 18 iv~~~L~~~GfeVidLG~~v~~e~~v~aa~~~------------------------~ad-iVglS~L~t~~~~~~~~~~~ 72 (128)
T cd02072 18 ILDHAFTEAGFNVVNLGVLSPQEEFIDAAIET------------------------DAD-AILVSSLYGHGEIDCKGLRE 72 (128)
T ss_pred HHHHHHHHCCCEEEECCCCCCHHHHHHHHHHc------------------------CCC-EEEEeccccCCHHHHHHHHH
Confidence 4444 4455999999986 35566666551 122 66666655554 5788999
Q ss_pred HHHhcCceeEEEeCCCch---hHHHHHhhcCccccCCCCCchhHHhCCCcceee
Q 017671 117 YLVQHHMVDVVVTTAGGI---EEDLVKCLAPTFKGDFALPGAYLRSKGLNRIGN 167 (368)
Q Consensus 117 ~Li~~~~VD~IVtTgg~l---ehDi~~~l~~~y~G~~~~dd~~Lr~~ginRigd 167 (368)
.|-++|+=|+.|-=||++ ++|..+ +-.+|++.|+.|++.
T Consensus 73 ~l~~~gl~~v~vivGG~~~i~~~d~~~------------~~~~L~~~Gv~~vf~ 114 (128)
T cd02072 73 KCDEAGLKDILLYVGGNLVVGKQDFED------------VEKRFKEMGFDRVFA 114 (128)
T ss_pred HHHHCCCCCCeEEEECCCCCChhhhHH------------HHHHHHHcCCCEEEC
Confidence 888888878878888874 233321 334677888877643
No 17
>PF12854 PPR_1: PPR repeat
Probab=59.44 E-value=12 Score=24.98 Aligned_cols=27 Identities=26% Similarity=0.549 Sum_probs=23.6
Q ss_pred CCCHHHHHHHHhhcCcccccHHHHHHHHHHH
Q 017671 37 GVNYSQLLKSMVSTGFQASNFGDAIEVVNQM 67 (368)
Q Consensus 37 ~~~~~~L~~~~~~~GFqA~~l~~A~~i~~~M 67 (368)
-.++.-||+.|-+.| ++.+|.+++++|
T Consensus 7 ~~ty~~lI~~~Ck~G----~~~~A~~l~~~M 33 (34)
T PF12854_consen 7 VVTYNTLIDGYCKAG----RVDEAFELFDEM 33 (34)
T ss_pred HhHHHHHHHHHHHCC----CHHHHHHHHHhC
Confidence 458889999998765 899999999998
No 18
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=59.17 E-value=83 Score=27.62 Aligned_cols=105 Identities=14% Similarity=0.237 Sum_probs=65.6
Q ss_pred HHhhcCcccccHHHH---HHHHHHHHhccccCCCCCcccccccCCccccccccc-eEEEccccccchhhhHHHHHHHHhc
Q 017671 46 SMVSTGFQASNFGDA---IEVVNQMLDWRLADEVIPEDCDERERDPEYRKSVRC-KVFLGFTSNLISSGVRDTVRYLVQH 121 (368)
Q Consensus 46 ~~~~~GFqA~~l~~A---~~i~~~M~~~~~~d~~~~~~~~~~~~~~~~~~~~~~-tIfL~~tgnmvssGlr~~i~~Li~~ 121 (368)
.++..||+..+||.. -+++....+ . ++ -|.+|+...-....+++++..|-+.
T Consensus 26 ~lr~~G~eVi~LG~~vp~e~i~~~a~~----~--------------------~~d~V~lS~~~~~~~~~~~~~~~~L~~~ 81 (137)
T PRK02261 26 ALTEAGFEVINLGVMTSQEEFIDAAIE----T--------------------DADAILVSSLYGHGEIDCRGLREKCIEA 81 (137)
T ss_pred HHHHCCCEEEECCCCCCHHHHHHHHHH----c--------------------CCCEEEEcCccccCHHHHHHHHHHHHhc
Confidence 344559999999974 455555555 1 12 3466665555566788899888888
Q ss_pred CceeEEEeCCCchhHHHHHhhcCccccCCCCCchhHHhCCCcceeeeeecCccHHHHHHHHHHHH
Q 017671 122 HMVDVVVTTAGGIEEDLVKCLAPTFKGDFALPGAYLRSKGLNRIGNLLVPNDNYCKFEDWIIPIF 186 (368)
Q Consensus 122 ~~VD~IVtTgg~lehDi~~~l~~~y~G~~~~dd~~Lr~~ginRigdv~ip~e~y~~~E~~i~~il 186 (368)
+.=|..|--||++.-+ .+++..+-.+|++.|+.++ |-|......+=+|+++.+
T Consensus 82 ~~~~~~i~vGG~~~~~---------~~~~~~~~~~l~~~G~~~v---f~~~~~~~~i~~~l~~~~ 134 (137)
T PRK02261 82 GLGDILLYVGGNLVVG---------KHDFEEVEKKFKEMGFDRV---FPPGTDPEEAIDDLKKDL 134 (137)
T ss_pred CCCCCeEEEECCCCCC---------ccChHHHHHHHHHcCCCEE---ECcCCCHHHHHHHHHHHh
Confidence 7777777778876311 1122223357888886554 456766655555555544
No 19
>PF04422 FrhB_FdhB_N: Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term; InterPro: IPR007516 Coenzyme F420 hydrogenase (1.12.99.1 from EC) reduces the low-potential two-electron acceptor coenzyme F420. This entry contains the N termini of F420 hydrogenase and dehydrogenase beta subunits [, ]. The N terminus of Methanobacterium formicicum formate dehydrogenase beta chain (1.2.1.2 from EC, P06130 from SWISSPROT) is also represented in this entry []. This region is often found in association with the 4Fe-4S binding domain, fer4 (IPR001450 from INTERPRO), and the C terminus IPR007525 from INTERPRO.
Probab=58.11 E-value=11 Score=30.27 Aligned_cols=42 Identities=21% Similarity=0.415 Sum_probs=29.3
Q ss_pred ccccccchhhhHHHHHHHHhcCceeEEEeCCCc-------------hhHHHHHhhcCcc
Q 017671 101 GFTSNLISSGVRDTVRYLVQHHMVDVVVTTAGG-------------IEEDLVKCLAPTF 146 (368)
Q Consensus 101 ~~tgnmvssGlr~~i~~Li~~~~VD~IVtTgg~-------------lehDi~~~l~~~y 146 (368)
+=+|-+++ .++.+|+++|+||++|+++.. =.+|++++-|..|
T Consensus 17 ~~sGG~vT----aLl~~lLe~g~Vd~vv~~~~~~~~~~~~~~~i~~~~eel~~~aGSkY 71 (82)
T PF04422_consen 17 SQSGGVVT----ALLAYLLESGLVDGVVVVGRDDDDPWRPEPVIATSPEELLKAAGSKY 71 (82)
T ss_pred CCcHHHHH----HHHHHHHHcCCceEEEEEeecCCCCcceEEEEECCHHHHHHHcCCce
Confidence 34444444 388999999999999999932 2467777666544
No 20
>PF04210 MtrG: Tetrahydromethanopterin S-methyltransferase, subunit G ; InterPro: IPR005866 This model describes the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive a sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of a methyl group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane
Probab=56.96 E-value=11 Score=30.05 Aligned_cols=49 Identities=20% Similarity=0.374 Sum_probs=38.9
Q ss_pred eeeeecCccHHHHHHHHHHHHHHHHHhhcccCcccCHHHHHHHhccccCCCchHHHHH
Q 017671 166 GNLLVPNDNYCKFEDWIIPIFDQMLKEQNEEEISWTPSKVIARLGKEINDESSYLYWA 223 (368)
Q Consensus 166 gdv~ip~e~y~~~E~~i~~il~~l~~~q~~~~~~~t~~e~~~~lG~~i~~e~Sil~~A 223 (368)
=-+++|.+.|.++++.+..+=++. ..+-+|+..+.|+.+..+=+|||=+
T Consensus 5 P~viv~~~~~~~i~~rLd~iEeKv---------Ef~~~Ei~Qr~GkkiGRDiGIlYG~ 53 (70)
T PF04210_consen 5 PQVIVDPDDFNEIMKRLDEIEEKV---------EFTNAEIAQRAGKKIGRDIGILYGL 53 (70)
T ss_pred CeeeeCHHHHHHHHHHHHHHHHHH---------HhHHHHHHHHHhHHhhhHHHHHHHH
Confidence 346788899988877776665443 4688999999999999999999965
No 21
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=56.16 E-value=11 Score=34.66 Aligned_cols=46 Identities=20% Similarity=0.283 Sum_probs=37.3
Q ss_pred eEEEccccccchhhhHHHHHHHHhcCc-eeEEEeCCCc--hhHHHHHhh
Q 017671 97 KVFLGFTSNLISSGVRDTVRYLVQHHM-VDVVVTTAGG--IEEDLVKCL 142 (368)
Q Consensus 97 tIfL~~tgnmvssGlr~~i~~Li~~~~-VD~IVtTgg~--lehDi~~~l 142 (368)
+|.|++||+.-+--.-++++.|.++|. |++|+|-.|- +..+.++.+
T Consensus 3 ~Ill~vtGsiaa~~~~~li~~L~~~g~~V~vv~T~~A~~fi~~~~l~~l 51 (182)
T PRK07313 3 NILLAVSGSIAAYKAADLTSQLTKRGYQVTVLMTKAATKFITPLTLQVL 51 (182)
T ss_pred EEEEEEeChHHHHHHHHHHHHHHHCCCEEEEEEChhHHHHcCHHHHHHH
Confidence 689999999999999999999999885 8999998884 444444444
No 22
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases. In E.coli, the protein UbiX (3-octaprenyl-4-hydroxybenzoate carboxy-lyase) has been shown to be involved in the third step of ubiquinone biosynthesis. It catalyzes the reaction [3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2]. The knockout of the homologous protein in yeast confers sensitivity to phenylacrylic acid. Members are not restricted to ubiquinone-synthesizing species. This family represents a distinct clade within the flavoprotein family of Pfam model pfam02441.
Probab=55.80 E-value=11 Score=34.74 Aligned_cols=37 Identities=11% Similarity=0.053 Sum_probs=32.5
Q ss_pred eEEEccccccchhhhHHHHHHHHhcCc-eeEEEeCCCc
Q 017671 97 KVFLGFTSNLISSGVRDTVRYLVQHHM-VDVVVTTAGG 133 (368)
Q Consensus 97 tIfL~~tgnmvssGlr~~i~~Li~~~~-VD~IVtTgg~ 133 (368)
+|.||+||+.-.-.--++++.|.++|. |.+|+|-+|-
T Consensus 1 ~illgvtGsiaa~ka~~lir~L~~~g~~V~vv~T~~A~ 38 (181)
T TIGR00421 1 RIVVAMTGASGVIYGIRLLEVLKEAGVEVHLVISDWAK 38 (181)
T ss_pred CEEEEEECHHHHHHHHHHHHHHHHCCCEEEEEECccHH
Confidence 489999998888888899999999885 9999998885
No 23
>COG4064 MtrG Tetrahydromethanopterin S-methyltransferase, subunit G [Coenzyme metabolism]
Probab=51.86 E-value=16 Score=29.40 Aligned_cols=50 Identities=20% Similarity=0.405 Sum_probs=37.0
Q ss_pred eeeeeecCccHHHHHHHHHHHHHHHHHhhcccCcccCHHHHHHHhccccCCCchHHHHH
Q 017671 165 IGNLLVPNDNYCKFEDWIIPIFDQMLKEQNEEEISWTPSKVIARLGKEINDESSYLYWA 223 (368)
Q Consensus 165 igdv~ip~e~y~~~E~~i~~il~~l~~~q~~~~~~~t~~e~~~~lG~~i~~e~Sil~~A 223 (368)
+--+++|.++|+++-+.+.+|=++. ..+.+|+..++||++...=+|||-+
T Consensus 7 ~P~v~v~~~dfne~~kRLdeieekv---------ef~~~Ev~Qr~GkkiGRDIGILYGl 56 (75)
T COG4064 7 VPKVVVDPDDFNEIHKRLDEIEEKV---------EFVNGEVYQRIGKKIGRDIGILYGL 56 (75)
T ss_pred CCccccCHHHHHHHHHHHHHHHHHH---------HhhHHHHHHHHHHHhcchHHHHHHH
Confidence 3446788888877655555544332 4688999999999999989999965
No 24
>COG0350 Ada Methylated DNA-protein cysteine methyltransferase [DNA replication, recombination, and repair]
Probab=51.75 E-value=19 Score=32.87 Aligned_cols=52 Identities=13% Similarity=0.125 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHhhcccCcccCHHHHHHHhccccCCCchHHHHHHHCCCceecCC
Q 017671 180 DWIIPIFDQMLKEQNEEEISWTPSKVIARLGKEINDESSYLYWAYKNNIPVFCPG 234 (368)
Q Consensus 180 ~~i~~il~~l~~~q~~~~~~~t~~e~~~~lG~~i~~e~Sil~~A~k~~VPVf~Pa 234 (368)
.|-+.+|+.+.+- .-|...|=.|+-.++|. ...-..+-.++.+|-+||++|=
T Consensus 88 ~Fq~~Vw~aL~~I--P~Get~TY~eiA~~ig~-p~a~rAVG~A~~~NPl~IiIPC 139 (168)
T COG0350 88 GFQGRVWQALREI--PYGETVTYGEIARRLGR-PTAVRAVGNANGANPLPIIIPC 139 (168)
T ss_pred hHHHHHHHHHhcC--CCCCcEeHHHHHHHhCC-CcHHHHHHHHhccCCceEEecC
Confidence 5667778766332 23556788899999997 2222459999999999999994
No 25
>PRK05920 aromatic acid decarboxylase; Validated
Probab=51.53 E-value=16 Score=34.47 Aligned_cols=39 Identities=15% Similarity=0.118 Sum_probs=33.3
Q ss_pred cceEEEccccccchhhhHHHHHHHHhcCc-eeEEEeCCCc
Q 017671 95 RCKVFLGFTSNLISSGVRDTVRYLVQHHM-VDVVVTTAGG 133 (368)
Q Consensus 95 ~~tIfL~~tgnmvssGlr~~i~~Li~~~~-VD~IVtTgg~ 133 (368)
+-+|.||+||+.-+----++++.|++.|. |.+|+|-+|-
T Consensus 3 ~krIllgITGsiaa~ka~~lvr~L~~~g~~V~vi~T~~A~ 42 (204)
T PRK05920 3 MKRIVLAITGASGAIYGVRLLECLLAADYEVHLVISKAAQ 42 (204)
T ss_pred CCEEEEEEeCHHHHHHHHHHHHHHHHCCCEEEEEEChhHH
Confidence 46799999998888777789999999985 8999988873
No 26
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=51.31 E-value=14 Score=34.02 Aligned_cols=37 Identities=24% Similarity=0.310 Sum_probs=31.9
Q ss_pred eEEEccccccchhhhHHHHHHHHhcCc-eeEEEeCCCc
Q 017671 97 KVFLGFTSNLISSGVRDTVRYLVQHHM-VDVVVTTAGG 133 (368)
Q Consensus 97 tIfL~~tgnmvssGlr~~i~~Li~~~~-VD~IVtTgg~ 133 (368)
+|.|++||+.-.--.-++++.|.+.|. |++|+|..|-
T Consensus 2 ~I~lgvtGs~~a~~~~~ll~~L~~~g~~V~vi~T~~A~ 39 (177)
T TIGR02113 2 KILLAVTGSIAAYKAADLTSQLTKLGYDVTVLMTQAAT 39 (177)
T ss_pred EEEEEEcCHHHHHHHHHHHHHHHHCCCEEEEEEChHHH
Confidence 589999998877777789999999886 9999998874
No 27
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=51.16 E-value=32 Score=21.12 Aligned_cols=27 Identities=26% Similarity=0.661 Sum_probs=22.1
Q ss_pred CHHHHHHHHhhcCcccccHHHHHHHHHHHHh
Q 017671 39 NYSQLLKSMVSTGFQASNFGDAIEVVNQMLD 69 (368)
Q Consensus 39 ~~~~L~~~~~~~GFqA~~l~~A~~i~~~M~~ 69 (368)
+++-||..|.+.| ++.+|.+++++|.+
T Consensus 2 ~~n~li~~~~~~~----~~~~a~~~~~~M~~ 28 (35)
T TIGR00756 2 TYNTLIDGLCKAG----RVEEALELFKEMLE 28 (35)
T ss_pred cHHHHHHHHHHCC----CHHHHHHHHHHHHH
Confidence 4667888887654 77899999999998
No 28
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=51.10 E-value=28 Score=21.23 Aligned_cols=27 Identities=26% Similarity=0.581 Sum_probs=22.1
Q ss_pred CHHHHHHHHhhcCcccccHHHHHHHHHHHHh
Q 017671 39 NYSQLLKSMVSTGFQASNFGDAIEVVNQMLD 69 (368)
Q Consensus 39 ~~~~L~~~~~~~GFqA~~l~~A~~i~~~M~~ 69 (368)
++.-|++.|.+. .++.+|.+++++|.+
T Consensus 2 ~y~~li~~~~~~----~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 2 TYNSLISGYCKM----GQFEEALEVFDEMRE 28 (31)
T ss_pred cHHHHHHHHHcc----chHHHHHHHHHHHhH
Confidence 456788888765 478999999999987
No 29
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=50.36 E-value=59 Score=27.52 Aligned_cols=73 Identities=16% Similarity=0.135 Sum_probs=47.7
Q ss_pred HHHHHhhc-CcccccHHH---HHHHHHHHHhccccCCCCCcccccccCCccccccccceEEEccccccchhhhHHHHHHH
Q 017671 43 LLKSMVST-GFQASNFGD---AIEVVNQMLDWRLADEVIPEDCDERERDPEYRKSVRCKVFLGFTSNLISSGVRDTVRYL 118 (368)
Q Consensus 43 L~~~~~~~-GFqA~~l~~---A~~i~~~M~~~~~~d~~~~~~~~~~~~~~~~~~~~~~tIfL~~tgnmvssGlr~~i~~L 118 (368)
++..|-+. ||+..+|+. .-+++....+++. --|+|+++-.-....+++++..|
T Consensus 18 ~~~~~l~~~G~~vi~lG~~vp~e~~~~~a~~~~~-----------------------d~V~iS~~~~~~~~~~~~~~~~L 74 (122)
T cd02071 18 VIARALRDAGFEVIYTGLRQTPEEIVEAAIQEDV-----------------------DVIGLSSLSGGHMTLFPEVIELL 74 (122)
T ss_pred HHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCC-----------------------CEEEEcccchhhHHHHHHHHHHH
Confidence 44444444 999999986 4455555555211 24577777666677788899998
Q ss_pred HhcCceeEEEeCCCchhHHH
Q 017671 119 VQHHMVDVVVTTAGGIEEDL 138 (368)
Q Consensus 119 i~~~~VD~IVtTgg~lehDi 138 (368)
-+.+.-++.+--||+...+-
T Consensus 75 ~~~~~~~i~i~~GG~~~~~~ 94 (122)
T cd02071 75 RELGAGDILVVGGGIIPPED 94 (122)
T ss_pred HhcCCCCCEEEEECCCCHHH
Confidence 88877677677777654443
No 30
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=49.28 E-value=68 Score=34.22 Aligned_cols=99 Identities=12% Similarity=0.092 Sum_probs=61.1
Q ss_pred HHHHHhhc-CcccccH-HHHHHHHHHHHhccccCCCCCccccc--ccCCccc---cccccceEEEccccccchhhhHHHH
Q 017671 43 LLKSMVST-GFQASNF-GDAIEVVNQMLDWRLADEVIPEDCDE--RERDPEY---RKSVRCKVFLGFTSNLISSGVRDTV 115 (368)
Q Consensus 43 L~~~~~~~-GFqA~~l-~~A~~i~~~M~~~~~~d~~~~~~~~~--~~~~~~~---~~~~~~tIfL~~tgnmvssGlr~~i 115 (368)
+...++.- .-.++.+ .++.+|+.+.+..+. .+....... ....+.. ....+-+|.|++||..-.-..-+++
T Consensus 13 ~~~~l~~~a~~~g~s~e~e~r~il~~~~~~~~--~p~~~~~~~~~~~~~~~~~~~~~l~~k~IllgVtGsIAayka~~lv 90 (475)
T PRK13982 13 IKAELRQRAAQNGRSMEEEVRVILRDATTPRH--GPAASSAAPVSAAAPPAAREQASLASKRVTLIIGGGIAAYKALDLI 90 (475)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhccCC--CCCCccccCcccccCCCcccccccCCCEEEEEEccHHHHHHHHHHH
Confidence 44444433 2344444 356778888877442 222211100 0111111 1234678999999999999999999
Q ss_pred HHHHhcC-ceeEEEeCCCc--hhHHHHHhhc
Q 017671 116 RYLVQHH-MVDVVVTTAGG--IEEDLVKCLA 143 (368)
Q Consensus 116 ~~Li~~~-~VD~IVtTgg~--lehDi~~~l~ 143 (368)
+.|.+.| -|.+|+|-.|- +....++.+.
T Consensus 91 r~L~k~G~~V~VvmT~sA~~fv~p~~~~~ls 121 (475)
T PRK13982 91 RRLKERGAHVRCVLTKAAQQFVTPLTASALS 121 (475)
T ss_pred HHHHhCcCEEEEEECcCHHHHhhHHHHHHhc
Confidence 9999988 58889988885 6666666663
No 31
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional
Probab=48.94 E-value=15 Score=34.20 Aligned_cols=37 Identities=11% Similarity=0.115 Sum_probs=32.9
Q ss_pred eEEEccccccchhhhHHHHHHHHh-cC-ceeEEEeCCCc
Q 017671 97 KVFLGFTSNLISSGVRDTVRYLVQ-HH-MVDVVVTTAGG 133 (368)
Q Consensus 97 tIfL~~tgnmvssGlr~~i~~Li~-~~-~VD~IVtTgg~ 133 (368)
+|.||+||+.-+-.--++++.|.+ .| -|.+|+|.+|-
T Consensus 3 ~IllgVTGsiaa~ka~~l~~~L~k~~g~~V~vv~T~~A~ 41 (185)
T PRK06029 3 RLIVGISGASGAIYGVRLLQVLRDVGEIETHLVISQAAR 41 (185)
T ss_pred EEEEEEECHHHHHHHHHHHHHHHhhcCCeEEEEECHHHH
Confidence 689999999888888899999999 35 69999999984
No 32
>PF04361 DUF494: Protein of unknown function (DUF494); InterPro: IPR007456 Members of this family of uncharacterised proteins are often named Smg.
Probab=48.87 E-value=52 Score=29.83 Aligned_cols=78 Identities=10% Similarity=0.278 Sum_probs=58.0
Q ss_pred CCHHHHHHHHhhcCcccccHHHHHHHHHHHHhccccCCCCCcccccccCCccccccccceEEEccccccchhhhHHHHHH
Q 017671 38 VNYSQLLKSMVSTGFQASNFGDAIEVVNQMLDWRLADEVIPEDCDERERDPEYRKSVRCKVFLGFTSNLISSGVRDTVRY 117 (368)
Q Consensus 38 ~~~~~L~~~~~~~GFqA~~l~~A~~i~~~M~~~~~~d~~~~~~~~~~~~~~~~~~~~~~tIfL~~tgnmvssGlr~~i~~ 117 (368)
-+-++|-+.+...||......+|.+-++..-.-+... .....+.....+||---=-.-+++-+|+.|.+
T Consensus 21 ~d~~~L~~~L~~aGF~~~eI~~Al~WL~~L~~~~~~~-----------~~~~~~~~~s~Riyt~~E~~~L~~e~rgfL~f 89 (155)
T PF04361_consen 21 PDQDDLTRELSAAGFEDEEINKALDWLEGLAELQEEE-----------PPAQFASPRSMRIYTPEEQEKLDTECRGFLLF 89 (155)
T ss_pred CCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccccc-----------cccccCCCCceEecCHHHHHHCCHHHHHHHHH
Confidence 3678899999999999999999999998876622000 00111222446777666677889999999999
Q ss_pred HHhcCceeE
Q 017671 118 LVQHHMVDV 126 (368)
Q Consensus 118 Li~~~~VD~ 126 (368)
|-+.|.+|.
T Consensus 90 Leq~gvL~~ 98 (155)
T PF04361_consen 90 LEQAGVLDP 98 (155)
T ss_pred HHHcCCCCH
Confidence 999998874
No 33
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=48.85 E-value=19 Score=33.89 Aligned_cols=39 Identities=18% Similarity=0.169 Sum_probs=32.8
Q ss_pred cceEEEccccccchhh-hHHHHHHHHhcC-ceeEEEeCCCc
Q 017671 95 RCKVFLGFTSNLISSG-VRDTVRYLVQHH-MVDVVVTTAGG 133 (368)
Q Consensus 95 ~~tIfL~~tgnmvssG-lr~~i~~Li~~~-~VD~IVtTgg~ 133 (368)
+-+|.||+||+.-.-- --++++.|.++| -|.+|+|.+|-
T Consensus 5 ~k~IllgVTGsiaa~k~a~~lir~L~k~G~~V~vv~T~aA~ 45 (196)
T PRK08305 5 GKRIGFGLTGSHCTYDEVMPEIEKLVDEGAEVTPIVSYTVQ 45 (196)
T ss_pred CCEEEEEEcCHHHHHHHHHHHHHHHHhCcCEEEEEECHhHH
Confidence 4689999999887777 578999999987 68888888874
No 34
>PF13041 PPR_2: PPR repeat family
Probab=48.14 E-value=30 Score=24.27 Aligned_cols=31 Identities=19% Similarity=0.476 Sum_probs=24.7
Q ss_pred CCHHHHHHHHhhcCcccccHHHHHHHHHHHHhccc
Q 017671 38 VNYSQLLKSMVSTGFQASNFGDAIEVVNQMLDWRL 72 (368)
Q Consensus 38 ~~~~~L~~~~~~~GFqA~~l~~A~~i~~~M~~~~~ 72 (368)
.++.-||+.|.+. +++.+|.+++++|.++..
T Consensus 4 ~~yn~li~~~~~~----~~~~~a~~l~~~M~~~g~ 34 (50)
T PF13041_consen 4 VTYNTLISGYCKA----GKFEEALKLFKEMKKRGI 34 (50)
T ss_pred HHHHHHHHHHHHC----cCHHHHHHHHHHHHHcCC
Confidence 4677788888764 588999999999998443
No 35
>COG0303 MoeA Molybdopterin biosynthesis enzyme [Coenzyme metabolism]
Probab=47.95 E-value=12 Score=38.81 Aligned_cols=78 Identities=28% Similarity=0.543 Sum_probs=48.6
Q ss_pred hhhHHHHHHHHhcCceeEEEeCCCc--hhHHHHHh-----hcC-ccccCCCCCchhHHhCCCcceeee-ee-----cCcc
Q 017671 109 SGVRDTVRYLVQHHMVDVVVTTAGG--IEEDLVKC-----LAP-TFKGDFALPGAYLRSKGLNRIGNL-LV-----PNDN 174 (368)
Q Consensus 109 sGlr~~i~~Li~~~~VD~IVtTgg~--lehDi~~~-----l~~-~y~G~~~~dd~~Lr~~ginRigdv-~i-----p~e~ 174 (368)
.-+++.|+...+. .|+||||||. =+.|+.+. +|. .+.|----.++- .++-++++. ++ |-..
T Consensus 230 ~~l~~~i~~a~~~--~DviItsGG~SvG~~D~v~~~l~~~lG~v~~~gia~kPGkP---~~~g~~~~~~v~gLPGnPvSa 304 (404)
T COG0303 230 EALREAIEKALSE--ADVIITSGGVSVGDADYVKAALERELGEVLFHGVAMKPGKP---TGLGRLGGKPVFGLPGNPVSA 304 (404)
T ss_pred HHHHHHHHHhhhc--CCEEEEeCCccCcchHhHHHHHHhcCCcEEEEeeeecCCCc---eEEEEECCcEEEECCCCHHHH
Confidence 3466777766666 8999999994 34555443 442 122211112222 456677775 43 5667
Q ss_pred HHHHHHHHHHHHHHHHH
Q 017671 175 YCKFEDWIIPIFDQMLK 191 (368)
Q Consensus 175 y~~~E~~i~~il~~l~~ 191 (368)
+-.|+.|++|++.++..
T Consensus 305 lv~f~~~v~p~l~~~~g 321 (404)
T COG0303 305 LVNFELFVRPLLRKLLG 321 (404)
T ss_pred HHHHHHHHHHHHHHhcC
Confidence 88999999999988754
No 36
>PHA02575 1 deoxynucleoside monophosphate kinase; Provisional
Probab=47.38 E-value=1.7e+02 Score=28.44 Aligned_cols=121 Identities=17% Similarity=0.190 Sum_probs=71.9
Q ss_pred ccccccchhhhHHHHHHHHhcCceeEEEeCCCchhHHHHHhhc------CccccCCCCCchhHHhCCCcceeeeeecCcc
Q 017671 101 GFTSNLISSGVRDTVRYLVQHHMVDVVVTTAGGIEEDLVKCLA------PTFKGDFALPGAYLRSKGLNRIGNLLVPNDN 174 (368)
Q Consensus 101 ~~tgnmvssGlr~~i~~Li~~~~VD~IVtTgg~lehDi~~~l~------~~y~G~~~~dd~~Lr~~ginRigdv~ip~e~ 174 (368)
++|| |..||=- +++.++++...-+.++=|..|-+=+..|++ +.|.-.+..+|-+= .|.+|=.++.+.++.
T Consensus 4 ~i~G-~~gsGKs-tva~~~~~~g~~~~~~~~d~ik~~l~~~~~~~~~~~~~~~~~~~~~~~~g--~~~dre~~l~~~~~~ 79 (227)
T PHA02575 4 AISG-KKRSGKD-TVADFIIENYNAVKYQLADPIKEILAIAMGRYGADDLMFVPGLTYDDFDG--IGYDREAPLPLSNED 79 (227)
T ss_pred EEeC-CCCCCHH-HHHHHHHhcCCcEEEehhHHHHHHHHHHHHHhcccCccccCCcccccccC--cCccccCCCcCCHHH
Confidence 4444 4455544 445555555555558888888888888886 23322344444332 499999999886544
Q ss_pred -HHHHHHHHHHHHHHH------------HHhhcccCcccCHHHHHHHhcccc---CCCchHHHHHHH
Q 017671 175 -YCKFEDWIIPIFDQM------------LKEQNEEEISWTPSKVIARLGKEI---NDESSYLYWAYK 225 (368)
Q Consensus 175 -y~~~E~~i~~il~~l------------~~~q~~~~~~~t~~e~~~~lG~~i---~~e~Sil~~A~k 225 (368)
...|+..+.-+-++. .+--......|||++++..+|-.+ -++.=|+..|.+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SiR~llQ~~GTd~~R~~d~~~Wvr~a~~ 146 (227)
T PHA02575 80 VIRIFEQALMLLNDKGTCYLLYAHYDKVYEIILNNNNPWSIRRLMQTLGTDIVVNFNKMYWVKLFAL 146 (227)
T ss_pred HHHHHHHHHHHHhccccceeeecchHHHHHHHcCCCCCCCHHHHHHHhcCceeeecCcCHhHHHHHH
Confidence 456666554432211 111112345799999999999543 345677777765
No 37
>PRK09417 mogA molybdenum cofactor biosynthesis protein MogA; Provisional
Probab=46.94 E-value=16 Score=34.13 Aligned_cols=23 Identities=35% Similarity=0.439 Sum_probs=18.8
Q ss_pred hHHHHHHHHhcCceeEEEeCCCc
Q 017671 111 VRDTVRYLVQHHMVDVVVTTAGG 133 (368)
Q Consensus 111 lr~~i~~Li~~~~VD~IVtTgg~ 133 (368)
+++.|+.++++.-+|+||||||.
T Consensus 54 I~~aL~~a~~~~~~DlIITTGGt 76 (193)
T PRK09417 54 IEQTLIELVDEMGCDLVLTTGGT 76 (193)
T ss_pred HHHHHHHHhhcCCCCEEEECCCC
Confidence 56778888776679999999994
No 38
>cd01421 IMPCH Inosine monophosphate cyclohydrolase domain. This is the N-terminal domain in the purine biosynthesis pathway protein ATIC (purH). The bifunctional ATIC protein contains a C-terminal ATIC formylase domain that formylates 5-aminoimidazole-4-carboxamide-ribonucleotide. The IMPCH domain then converts the formyl-5-aminoimidazole-4-carboxamide-ribonucleotide to inosine monophosphate. This is the final step in de novo purine production.
Probab=45.72 E-value=1.1e+02 Score=28.85 Aligned_cols=112 Identities=24% Similarity=0.351 Sum_probs=65.3
Q ss_pred eEEEccccccchhhhHHHHHHHHhcCceeEEEeCCCc---hhHH------HH-------------HhhcCc-cccCCC--
Q 017671 97 KVFLGFTSNLISSGVRDTVRYLVQHHMVDVVVTTAGG---IEED------LV-------------KCLAPT-FKGDFA-- 151 (368)
Q Consensus 97 tIfL~~tgnmvssGlr~~i~~Li~~~~VD~IVtTgg~---lehD------i~-------------~~l~~~-y~G~~~-- 151 (368)
++|++++= -+++-++.+.|.+.|+ -|++|+|+ |.+- +- |.|.|. |-|-..
T Consensus 2 ~vLISVsD---K~~l~~lAk~L~~lGf--~I~AT~GTAk~L~e~GI~v~~V~k~TgfpE~l~GRVKTLHP~ihggiL~~~ 76 (187)
T cd01421 2 RALISVSD---KTGLVEFAKELVELGV--EILSTGGTAKFLKEAGIPVTDVSDITGFPEILGGRVKTLHPKIHGGILARR 76 (187)
T ss_pred EEEEEEeC---cccHHHHHHHHHHCCC--EEEEccHHHHHHHHcCCeEEEhhhccCCcHhhCCccccCChhhhhhhhcCC
Confidence 46777764 7888999999999987 46788874 2211 11 222221 112111
Q ss_pred --CCchhHHhCCCcceeeeeecCccHHHHHHHHHHHHHHHHHhhcccCcccCHHHHHHHhccccCCCchHHHHHHHCC--
Q 017671 152 --LPGAYLRSKGLNRIGNLLVPNDNYCKFEDWIIPIFDQMLKEQNEEEISWTPSKVIARLGKEINDESSYLYWAYKNN-- 227 (368)
Q Consensus 152 --~dd~~Lr~~ginRigdv~ip~e~y~~~E~~i~~il~~l~~~q~~~~~~~t~~e~~~~lG~~i~~e~Sil~~A~k~~-- 227 (368)
-++.+|.+.||..|-=|++ |+-.||+.+..- -.+..+.+..+= | -..|.|++|+||-
T Consensus 77 ~~~~~~~~~~~~i~~idlVvv---NlYpF~~~~~~~-------------~~~~~~~iEnID--I-GGpsmlRaAAKN~~~ 137 (187)
T cd01421 77 DNEEHKDLEEHGIEPIDLVVV---NLYPFEETVAKG-------------NVTLEEAIENID--I-GGPSLLRAAAKNYKD 137 (187)
T ss_pred CChhHHHHHHcCCCCeeEEEE---cccChHHHhccC-------------CCCHHHHHHhcc--C-CcHHHHHHHHhcCCC
Confidence 1223688999999866666 444466544320 123344444431 1 2579999999997
Q ss_pred Cceec
Q 017671 228 IPVFC 232 (368)
Q Consensus 228 VPVf~ 232 (368)
|.|.|
T Consensus 138 V~vv~ 142 (187)
T cd01421 138 VTVLV 142 (187)
T ss_pred eEEEc
Confidence 66654
No 39
>PRK03430 hypothetical protein; Validated
Probab=42.53 E-value=70 Score=29.28 Aligned_cols=81 Identities=11% Similarity=0.204 Sum_probs=56.8
Q ss_pred CCCHHHHHHHHhhcCcccccHHHHHHHHHHHHhccccCCCCCcccccccCCccccccccceEEEccccccchhhhHHHHH
Q 017671 37 GVNYSQLLKSMVSTGFQASNFGDAIEVVNQMLDWRLADEVIPEDCDERERDPEYRKSVRCKVFLGFTSNLISSGVRDTVR 116 (368)
Q Consensus 37 ~~~~~~L~~~~~~~GFqA~~l~~A~~i~~~M~~~~~~d~~~~~~~~~~~~~~~~~~~~~~tIfL~~tgnmvssGlr~~i~ 116 (368)
.-+-++|-+.+...||......+|.+-++..-.-+-.. ..+. .........+||-.-=-.-+++-+|+.|.
T Consensus 20 ~pd~~~L~~~L~~aGF~~~eI~~AL~WLe~L~~~~~~~--~~~~-------~~~~~~~s~RIYt~~E~~~L~~e~rGFL~ 90 (157)
T PRK03430 20 RVDQDKLEDDLTDAGFHREDIYNALLWLEKLADLQEGL--AEPM-------QLASDPLSMRIYTPEECERLDASCRGFLL 90 (157)
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcccc--cccc-------cccCCCcceeeeCHHHHHhCCHHHHHHHH
Confidence 34677899999999999999999999998885422111 0000 00000123677776667788999999999
Q ss_pred HHHhcCceeE
Q 017671 117 YLVQHHMVDV 126 (368)
Q Consensus 117 ~Li~~~~VD~ 126 (368)
||-+.|.++.
T Consensus 91 fLEq~gvL~~ 100 (157)
T PRK03430 91 FLEQIQVLNL 100 (157)
T ss_pred HHHHcCCCCH
Confidence 9999997653
No 40
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=41.89 E-value=1.4e+02 Score=26.36 Aligned_cols=88 Identities=13% Similarity=0.247 Sum_probs=57.0
Q ss_pred HHHHH-hhcCcccccHHHH---HHHHHHHHhccccCCCCCcccccccCCccccccccceEEEccccccchhh--hHHHHH
Q 017671 43 LLKSM-VSTGFQASNFGDA---IEVVNQMLDWRLADEVIPEDCDERERDPEYRKSVRCKVFLGFTSNLISSG--VRDTVR 116 (368)
Q Consensus 43 L~~~~-~~~GFqA~~l~~A---~~i~~~M~~~~~~d~~~~~~~~~~~~~~~~~~~~~~tIfL~~tgnmvssG--lr~~i~ 116 (368)
++..| +..||.--+||.. -++++...+ . +.. ++++++=|.++- +++++.
T Consensus 20 iv~~~l~~~GfeVi~LG~~v~~e~~v~aa~~----~--------------------~ad-iVglS~l~~~~~~~~~~~~~ 74 (134)
T TIGR01501 20 ILDHAFTNAGFNVVNLGVLSPQEEFIKAAIE----T--------------------KAD-AILVSSLYGHGEIDCKGLRQ 74 (134)
T ss_pred HHHHHHHHCCCEEEECCCCCCHHHHHHHHHH----c--------------------CCC-EEEEecccccCHHHHHHHHH
Confidence 44444 4459999999874 455555555 1 122 667766666655 889999
Q ss_pred HHHhcCceeEEEeCCCch---hHHHHHhhcCccccCCCCCchhHHhCCCcceee
Q 017671 117 YLVQHHMVDVVVTTAGGI---EEDLVKCLAPTFKGDFALPGAYLRSKGLNRIGN 167 (368)
Q Consensus 117 ~Li~~~~VD~IVtTgg~l---ehDi~~~l~~~y~G~~~~dd~~Lr~~ginRigd 167 (368)
.|-++|+-|.+|-=||++ ++|+.. -..+|++.|+.|++.
T Consensus 75 ~l~~~gl~~~~vivGG~~vi~~~d~~~------------~~~~l~~~Gv~~vF~ 116 (134)
T TIGR01501 75 KCDEAGLEGILLYVGGNLVVGKQDFPD------------VEKRFKEMGFDRVFA 116 (134)
T ss_pred HHHHCCCCCCEEEecCCcCcChhhhHH------------HHHHHHHcCCCEEEC
Confidence 999999878777677763 344321 123688888766543
No 41
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=40.98 E-value=23 Score=30.44 Aligned_cols=23 Identities=26% Similarity=0.410 Sum_probs=18.3
Q ss_pred hhhHHHHHHHHhcCceeEEEeCCCc
Q 017671 109 SGVRDTVRYLVQHHMVDVVVTTAGG 133 (368)
Q Consensus 109 sGlr~~i~~Li~~~~VD~IVtTgg~ 133 (368)
.-+++.|..++++ .|+|+||||.
T Consensus 46 ~~i~~~i~~~~~~--~DlvittGG~ 68 (133)
T cd00758 46 DSIRAALIEASRE--ADLVLTTGGT 68 (133)
T ss_pred HHHHHHHHHHHhc--CCEEEECCCC
Confidence 3467778878776 8999999994
No 42
>PF04492 Phage_rep_O: Bacteriophage replication protein O ; InterPro: IPR006497 This entry is represented by the N-terminal domain of Bacteriophage lambda, GpO. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.; GO: 0006260 DNA replication
Probab=40.67 E-value=28 Score=29.38 Aligned_cols=74 Identities=12% Similarity=0.319 Sum_probs=53.6
Q ss_pred ccCCCCC--HHHHHHHHhhcCcccccHHHHHHHHHHHHhccccCCCCCcccccccCCccccccccceEEEccccccchhh
Q 017671 33 DFNQGVN--YSQLLKSMVSTGFQASNFGDAIEVVNQMLDWRLADEVIPEDCDERERDPEYRKSVRCKVFLGFTSNLISSG 110 (368)
Q Consensus 33 d~~~~~~--~~~L~~~~~~~GFqA~~l~~A~~i~~~M~~~~~~d~~~~~~~~~~~~~~~~~~~~~~tIfL~~tgnmvssG 110 (368)
|.+.|.+ .++|++++....|.++++.-..-|+.+=..|+.+.+- ...+-|..+|| +-.+-
T Consensus 9 ~~~~GytriaNelld~l~~~dls~rq~ki~~ai~RkTyG~nKk~d~-----------------Is~sq~~e~tg-~~~~~ 70 (100)
T PF04492_consen 9 DLDDGYTRIANELLDALLRADLSGRQLKILLAIIRKTYGWNKKMDR-----------------ISNSQIAEMTG-LSRDH 70 (100)
T ss_pred eccCCeeecHHHHHHHHHhccccHHHHHHHHHHHHHccCCCCccce-----------------eeHHHHHHHHC-cCHHH
Confidence 3445654 7899999999999999997777777766666543321 11233556666 67788
Q ss_pred hHHHHHHHHhcCce
Q 017671 111 VRDTVRYLVQHHMV 124 (368)
Q Consensus 111 lr~~i~~Li~~~~V 124 (368)
+...+.+|++.|++
T Consensus 71 V~~al~~Li~~~vI 84 (100)
T PF04492_consen 71 VSKALNELIRRGVI 84 (100)
T ss_pred HHHHHHHHHHCCCE
Confidence 88999999999998
No 43
>COG2896 MoaA Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism]
Probab=40.11 E-value=63 Score=32.80 Aligned_cols=115 Identities=21% Similarity=0.282 Sum_probs=71.4
Q ss_pred EEEccccccchhhhHHHHHHHHhcCceeEEEeCCCchhHHHHHhhcCccccCCCCCchhHHhCCCcceeeee--ecCccH
Q 017671 98 VFLGFTSNLISSGVRDTVRYLVQHHMVDVVVTTAGGIEEDLVKCLAPTFKGDFALPGAYLRSKGLNRIGNLL--VPNDNY 175 (368)
Q Consensus 98 IfL~~tgnmvssGlr~~i~~Li~~~~VD~IVtTgg~lehDi~~~l~~~y~G~~~~dd~~Lr~~ginRigdv~--ip~e~y 175 (368)
|=||=-..++=..+.++|+-|-+.+..|+-.||=|-+=.+.. .+|.++|++||---+ ++++-|
T Consensus 63 vRlTGGEPllR~dl~eIi~~l~~~~~~~islTTNG~~L~~~a---------------~~Lk~AGl~rVNVSLDsld~e~f 127 (322)
T COG2896 63 VRLTGGEPLLRKDLDEIIARLARLGIRDLSLTTNGVLLARRA---------------ADLKEAGLDRVNVSLDSLDPEKF 127 (322)
T ss_pred EEEeCCCchhhcCHHHHHHHHhhcccceEEEecchhhHHHHH---------------HHHHHcCCcEEEeecccCCHHHH
Confidence 334444566667777777777777777777777776544443 378999999995444 356667
Q ss_pred HHHHH--HHHHHHHHHHHhhcccCcccCHHHHHHHhccccCCC--chHHHHHHHCCCce
Q 017671 176 CKFED--WIIPIFDQMLKEQNEEEISWTPSKVIARLGKEINDE--SSYLYWAYKNNIPV 230 (368)
Q Consensus 176 ~~~E~--~i~~il~~l~~~q~~~~~~~t~~e~~~~lG~~i~~e--~Sil~~A~k~~VPV 230 (368)
.++.. .+.++++.+.+.++. -.+|-++---+=+.+|+. .-++.||...++++
T Consensus 128 ~~IT~~~~~~~Vl~GI~~A~~~---Gl~pVKlN~Vv~kgvNd~ei~~l~e~~~~~~~~l 183 (322)
T COG2896 128 RKITGRDRLDRVLEGIDAAVEA---GLTPVKLNTVLMKGVNDDEIEDLLEFAKERGAQL 183 (322)
T ss_pred HHHhCCCcHHHHHHHHHHHHHc---CCCceEEEEEEecCCCHHHHHHHHHHHhhcCCce
Confidence 66663 456677666443321 134444433333445542 56788888888876
No 44
>TIGR02667 moaB_proteo molybdenum cofactor biosynthesis protein B, proteobacterial. This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA.
Probab=40.05 E-value=25 Score=31.62 Aligned_cols=24 Identities=25% Similarity=0.369 Sum_probs=18.3
Q ss_pred hhHHHHHHHHhcCceeEEEeCCCc
Q 017671 110 GVRDTVRYLVQHHMVDVVVTTAGG 133 (368)
Q Consensus 110 Glr~~i~~Li~~~~VD~IVtTgg~ 133 (368)
-+++.|+.+++..-.|+||||||.
T Consensus 50 ~i~~~l~~~~~~~~~DlVIttGGt 73 (163)
T TIGR02667 50 QIRAQVSAWIADPDVQVILITGGT 73 (163)
T ss_pred HHHHHHHHHHhcCCCCEEEECCCc
Confidence 356777777655569999999994
No 45
>PF00994 MoCF_biosynth: Probable molybdopterin binding domain; InterPro: IPR001453 Eukaryotic and prokaryotic molybdoenzymes require a molybdopterin cofactor (MoCF) for their activity. The biosynthesis of this cofactor involves a complex multistep enzymatic pathway. One of the eukaryotic proteins involved in this pathway is the Drosophila protein cinnamon [] which is highly similar to gephyrin, a rat microtubule-associated protein which was thought to anchor the glycine receptor to subsynaptic microtubules. Cinnamon and gephyrin are evolutionary related, in their N-terminal half, to the Escherichia coli MoCF biosynthesis proteins mog/chlG and moaB/chlA2 and, in their C-terminal half, to E. coli moeA/chlE.; GO: 0006777 Mo-molybdopterin cofactor biosynthetic process; PDB: 3TCR_B 1O8O_B 1O8Q_G 1EAV_D 1O8N_C 1UUX_A 1UUY_A 2G2C_A 2G4R_C 3K6A_F ....
Probab=39.91 E-value=26 Score=30.32 Aligned_cols=23 Identities=26% Similarity=0.582 Sum_probs=17.6
Q ss_pred hhhHHHHHHHHhcCceeEEEeCCCc
Q 017671 109 SGVRDTVRYLVQHHMVDVVVTTAGG 133 (368)
Q Consensus 109 sGlr~~i~~Li~~~~VD~IVtTgg~ 133 (368)
.-+.+.|+..+++. |+||||||.
T Consensus 44 ~~i~~~l~~~~~~~--D~VittGG~ 66 (144)
T PF00994_consen 44 DAIKEALRRALDRA--DLVITTGGT 66 (144)
T ss_dssp HHHHHHHHHHHHTT--SEEEEESSS
T ss_pred HHHHHHHHhhhccC--CEEEEcCCc
Confidence 44666677777776 999999984
No 46
>TIGR00679 hpr-ser Hpr(Ser) kinase/phosphatase. The hprK gene of Enterococcus faecalis encodes a bifunctional enzyme: the HPr kinase/phosphatase
Probab=39.74 E-value=17 Score=36.56 Aligned_cols=81 Identities=19% Similarity=0.190 Sum_probs=52.5
Q ss_pred cccCCCchHHHHHHHCCCceecCCCCchhHHHHHHHhHhc--CCCcEeehHHHHHHHHHHHhhcCCCceeEEEEcCCCch
Q 017671 211 KEINDESSYLYWAYKNNIPVFCPGLTDGSLGDMLYFHSFR--SPGLIIDIVQDIRAINGEAVHASPRKTGLIILGGGLPK 288 (368)
Q Consensus 211 ~~i~~e~Sil~~A~k~~VPVf~Pa~tDgsiG~~l~~~~~~--~~~~~~D~v~D~~~l~~i~~~s~~~~~G~iilGGGVpK 288 (368)
+...++.-++..|.+++||+|+....-+.++..+-.|-.+ .+...+. ..++.- ...|++|.|-.=..
T Consensus 90 ~~~~~p~~l~~~a~~~~ip~l~t~~~~~~~~~~l~~~L~~~la~~~~~h---------g~~v~i--~g~gvli~G~sg~G 158 (304)
T TIGR00679 90 KSFTDPTVLLQVNETYQVPILKTDLFSTELSFRLETYLNEQFAPTAAIH---------GVLVEV--YGVGVLITGKSGVG 158 (304)
T ss_pred CcCCCCHHHHHHHHHhCCcEEEeCCcHHHHHHHHHHHHHHhhccceeee---------eEEEEE--CCEEEEEEcCCCCC
Confidence 3445678999999999999999999999999886654221 1111111 000112 46799999965555
Q ss_pred hhhhhcccccCCce
Q 017671 289 HHICNANMMRNGAD 302 (368)
Q Consensus 289 h~i~~~~l~r~G~D 302 (368)
--.+-..|++.|+.
T Consensus 159 KS~lal~Li~rg~~ 172 (304)
T TIGR00679 159 KSETALELINRGHR 172 (304)
T ss_pred HHHHHHHHHHcCCc
Confidence 55555566666763
No 47
>PRK02122 glucosamine-6-phosphate deaminase-like protein; Validated
Probab=38.22 E-value=96 Score=34.31 Aligned_cols=120 Identities=23% Similarity=0.289 Sum_probs=62.2
Q ss_pred cccccccccccccCCCCCccccccccCCCCCHHHHHHHHhhcCcccccHHHHHHHHHHHHhccccCCCCC---ccccccc
Q 017671 9 ASVHSTVFKESESLEGKGTKIEGYDFNQGVNYSQLLKSMVSTGFQASNFGDAIEVVNQMLDWRLADEVIP---EDCDERE 85 (368)
Q Consensus 9 ~~~~~avl~~s~~~~~~~~~V~g~d~~~~~~~~~L~~~~~~~GFqA~~l~~A~~i~~~M~~~~~~d~~~~---~~~~~~~ 85 (368)
+..+.||.-=|..+-...-+...-|++ ...+.+|+..|.. -....++++|.+.+ .. ..++ |+.++-.
T Consensus 291 ~~~~~~~~~l~~~~~k~~l~l~~~d~~-~~~~~~l~~~~g~------~~~~~~~~f~~~~~-~i--~~~p~g~~~~~~~~ 360 (652)
T PRK02122 291 KLIRRAVVWLCQKLGKPILKLTDKDYN-ENGLSDLLAQYGS------AYNVNIKVFNDLQH-TI--TGWPGGKPNADDTN 360 (652)
T ss_pred HHHHHHHHHHHHHhCCCcccCchhhhh-hcCHHHHHHHhCc------HHHHHHHHHHHHHH-Hh--cCCCCCCCCccccc
Confidence 344445543333332222345555665 4478899998854 23345677777765 11 1111 1111111
Q ss_pred CCccccccccceEEEcccc--ccchhhhHHHHHHHHhcCc-eeEEEeCCCch---hHHHHH
Q 017671 86 RDPEYRKSVRCKVFLGFTS--NLISSGVRDTVRYLVQHHM-VDVVVTTAGGI---EEDLVK 140 (368)
Q Consensus 86 ~~~~~~~~~~~tIfL~~tg--nmvssGlr~~i~~Li~~~~-VD~IVtTgg~l---ehDi~~ 140 (368)
.|+. .....+-.|-++. -=-.-||+++|+.|+++|. |++++.|-|++ ++|..+
T Consensus 361 -~~~~-~~~~~~rvLv~spHPDDevi~~GGTlarl~~~G~~V~vv~~TsG~~av~d~~~~~ 419 (652)
T PRK02122 361 -RPER-ALPYPKRVIIFSPHPDDDVISMGGTFRRLVEQGHDVHVAYQTSGNIAVFDEEVLR 419 (652)
T ss_pred -CCcc-cccCCceEEEEEeCCCchHhhhHHHHHHHHHCCCcEEEEEecCCcccCCccchhh
Confidence 1111 1111121232221 1123588999999999985 89999999986 555544
No 48
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=38.07 E-value=58 Score=20.24 Aligned_cols=27 Identities=22% Similarity=0.533 Sum_probs=22.2
Q ss_pred CHHHHHHHHhhcCcccccHHHHHHHHHHHHh
Q 017671 39 NYSQLLKSMVSTGFQASNFGDAIEVVNQMLD 69 (368)
Q Consensus 39 ~~~~L~~~~~~~GFqA~~l~~A~~i~~~M~~ 69 (368)
+++-+++++.+.| +..+|.+++++|.+
T Consensus 3 ty~~ll~a~~~~g----~~~~a~~~~~~M~~ 29 (34)
T PF13812_consen 3 TYNALLRACAKAG----DPDAALQLFDEMKE 29 (34)
T ss_pred HHHHHHHHHHHCC----CHHHHHHHHHHHHH
Confidence 5677888888865 46679999999998
No 49
>PLN02800 imidazoleglycerol-phosphate dehydratase
Probab=38.00 E-value=32 Score=33.99 Aligned_cols=73 Identities=27% Similarity=0.410 Sum_probs=48.7
Q ss_pred ccceEEEcc----cc-ccchhhhH---HHHHHHHhcCceeEEEeCCCchh-------HHHHHhhcCccccCCCCCchhHH
Q 017671 94 VRCKVFLGF----TS-NLISSGVR---DTVRYLVQHHMVDVVVTTAGGIE-------EDLVKCLAPTFKGDFALPGAYLR 158 (368)
Q Consensus 94 ~~~tIfL~~----tg-nmvssGlr---~~i~~Li~~~~VD~IVtTgg~le-------hDi~~~l~~~y~G~~~~dd~~Lr 158 (368)
+++.|-+.+ +| +-++||+. .++..|.+|+.+|.-|..=|-++ ||+.=+||.-+.- .+.|
T Consensus 74 kET~I~v~l~LDG~G~~~i~TGi~FlDHML~~~a~Hg~fdL~V~a~GDl~vD~HHtvEDvgI~LG~Al~~--ALGd---- 147 (261)
T PLN02800 74 KETNVSVKINLDGTGVADSSTGIPFLDHMLDQLASHGLFDVHVKATGDLWIDDHHTNEDVALAIGTALLK--ALGD---- 147 (261)
T ss_pred cceEEEEEEEeCCCCceeeecCccHHHHHHHHHHHHcCCCeEEEEecCccccCCCchhhhhhhHHHHHHH--HhcC----
Confidence 445544444 33 45889976 58999999999999888777654 4555555532210 0111
Q ss_pred hCCCcceeeeeecC
Q 017671 159 SKGLNRIGNLLVPN 172 (368)
Q Consensus 159 ~~ginRigdv~ip~ 172 (368)
+.||+|.|+-++|-
T Consensus 148 k~GI~RyG~a~vPM 161 (261)
T PLN02800 148 RKGINRFGDFSAPL 161 (261)
T ss_pred ccccceeEeeeecc
Confidence 48999999999994
No 50
>PRK01026 tetrahydromethanopterin S-methyltransferase subunit G; Provisional
Probab=37.78 E-value=29 Score=28.31 Aligned_cols=48 Identities=17% Similarity=0.410 Sum_probs=34.9
Q ss_pred eeeecCccHHHHHHHHHHHHHHHHHhhcccCcccCHHHHHHHhccccCCCchHHHHH
Q 017671 167 NLLVPNDNYCKFEDWIIPIFDQMLKEQNEEEISWTPSKVIARLGKEINDESSYLYWA 223 (368)
Q Consensus 167 dv~ip~e~y~~~E~~i~~il~~l~~~q~~~~~~~t~~e~~~~lG~~i~~e~Sil~~A 223 (368)
-+++|.++|.++-+.+.++=++. ..|-+|+..+.||.+..+=+|||=+
T Consensus 9 ~viv~~~d~~~i~~rLD~iEeKV---------Eftn~Ei~Qr~GkkvGRDiGIlYG~ 56 (77)
T PRK01026 9 QVVVDPKDFKEIQKRLDEIEEKV---------EFTNAEIFQRIGKKVGRDIGILYGL 56 (77)
T ss_pred eeecCHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHhHHhhhHHHHHHHH
Confidence 45677777766555444443322 4688999999999999999999965
No 51
>PF14420 Clr5: Clr5 domain
Probab=37.41 E-value=26 Score=26.04 Aligned_cols=27 Identities=22% Similarity=0.439 Sum_probs=22.1
Q ss_pred ccccccCCCCCHHHHHHHHhhc-Ccccc
Q 017671 29 IEGYDFNQGVNYSQLLKSMVST-GFQAS 55 (368)
Q Consensus 29 V~g~d~~~~~~~~~L~~~~~~~-GFqA~ 55 (368)
|...=++++++++++++.|+.. ||.|+
T Consensus 12 I~~LY~~e~~tl~~v~~~M~~~~~F~at 39 (54)
T PF14420_consen 12 IERLYIDENKTLEEVMEIMKEEHGFKAT 39 (54)
T ss_pred HHHHHHhCCCcHHHHHHHHHHHhCCCcC
Confidence 4444456799999999999887 99998
No 52
>TIGR01149 mtrG N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit G. coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranfersae is membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.
Probab=36.97 E-value=30 Score=27.67 Aligned_cols=48 Identities=19% Similarity=0.368 Sum_probs=34.8
Q ss_pred eeeecCccHHHHHHHHHHHHHHHHHhhcccCcccCHHHHHHHhccccCCCchHHHHH
Q 017671 167 NLLVPNDNYCKFEDWIIPIFDQMLKEQNEEEISWTPSKVIARLGKEINDESSYLYWA 223 (368)
Q Consensus 167 dv~ip~e~y~~~E~~i~~il~~l~~~q~~~~~~~t~~e~~~~lG~~i~~e~Sil~~A 223 (368)
-+++|..+|.++-+.+.++=++. ..+-+|+..+.||.+..+=+|||=+
T Consensus 6 ~v~v~~~d~~~i~~rLd~iEeKV---------Ef~~~E~~Qr~Gkk~GRDiGIlYG~ 53 (70)
T TIGR01149 6 AVFVEPDEFNEVMKRLDEIEEKV---------EFVNGEVAQRIGKKVGRDIGILYGL 53 (70)
T ss_pred eeecCHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHhHHhhhHHHHHHHH
Confidence 46778788766544444433322 4688999999999999889999865
No 53
>smart00852 MoCF_biosynth Probable molybdopterin binding domain. This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor. The domain is presumed to bind molybdopterin. The structure of this domain is known, and it forms an alpha/beta structure. In the known structure of Gephyrin this domain mediates trimerisation.
Probab=36.68 E-value=29 Score=29.62 Aligned_cols=22 Identities=27% Similarity=0.613 Sum_probs=16.9
Q ss_pred hhHHHHHHHHhcCceeEEEeCCCc
Q 017671 110 GVRDTVRYLVQHHMVDVVVTTAGG 133 (368)
Q Consensus 110 Glr~~i~~Li~~~~VD~IVtTgg~ 133 (368)
-+++.|+.++++ .|+||||||.
T Consensus 46 ~I~~~l~~~~~~--~dliittGG~ 67 (135)
T smart00852 46 AIKEALREALER--ADLVITTGGT 67 (135)
T ss_pred HHHHHHHHHHhC--CCEEEEcCCC
Confidence 456677777764 8999999994
No 54
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=36.64 E-value=37 Score=31.47 Aligned_cols=31 Identities=23% Similarity=0.483 Sum_probs=23.9
Q ss_pred HHHHHHHHhcCceeEEEeCCCc--hhHHHHHhhcC
Q 017671 112 RDTVRYLVQHHMVDVVVTTAGG--IEEDLVKCLAP 144 (368)
Q Consensus 112 r~~i~~Li~~~~VD~IVtTgg~--lehDi~~~l~~ 144 (368)
+++|..|.+.+ ++||+|||+ +.+--.++|..
T Consensus 62 ~~vl~~l~~~~--~~ViaTGGG~v~~~enr~~l~~ 94 (172)
T COG0703 62 TEVLKELLEED--NAVIATGGGAVLSEENRNLLKK 94 (172)
T ss_pred HHHHHHHhhcC--CeEEECCCccccCHHHHHHHHh
Confidence 35899999998 799999998 44566666653
No 55
>TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family. This model describes one of two paralogous families of archaealflavoprotein. The other, described by TIGR02699 and typified by the partially characterized AF1518 of Archaeoglobus fulgidus, is a homodimeric FMN-containing flavoprotein that accepts electrons from ferredoxin and can transfer them to various oxidoreductases. The function of this protein family is unknown.
Probab=36.59 E-value=32 Score=32.67 Aligned_cols=37 Identities=19% Similarity=0.192 Sum_probs=31.1
Q ss_pred eEEEccccccchh-hhHHHHHHHHhc--Cc-eeEEEeCCCc
Q 017671 97 KVFLGFTSNLISS-GVRDTVRYLVQH--HM-VDVVVTTAGG 133 (368)
Q Consensus 97 tIfL~~tgnmvss-Glr~~i~~Li~~--~~-VD~IVtTgg~ 133 (368)
+|.+++||+-.+. ..=++++.|++. |. |++|+|-+|-
T Consensus 1 ~i~~~itGs~~~~~~~~~l~~~L~~~~~g~~V~vv~T~~a~ 41 (234)
T TIGR02700 1 RIGWGITGAGHLLVESFQVMKELKREIEELRVSTFVSRAGE 41 (234)
T ss_pred CeEEEEeCccHhHHHHHHHHHHHHhhcCCCeEEEEEChhHH
Confidence 5789999987664 666899999998 76 9999999983
No 56
>PF09743 DUF2042: Uncharacterized conserved protein (DUF2042); InterPro: IPR018611 The ubiquitin fold modifier 1 (Ufm1) is the most recently discovered ubiquitin-like modifier whose conjugation (ufmylation) system is conserved in multicellular organisms. Ufm1 is known to covalently attach with cellular protein(s) via a specific E1-activating enzyme (Uba5), an E2-conjugating enzyme (Ufc1), and a E3-ligating enzyme []. This entry represents E3 UFM1-protein ligase 1.
Probab=34.72 E-value=88 Score=30.86 Aligned_cols=21 Identities=29% Similarity=0.553 Sum_probs=19.8
Q ss_pred HHHHHHHHhcCceeEEEeCCC
Q 017671 112 RDTVRYLVQHHMVDVVVTTAG 132 (368)
Q Consensus 112 r~~i~~Li~~~~VD~IVtTgg 132 (368)
=|+|.-|++.+++|+|-|+-|
T Consensus 27 iEiv~kL~~~~~ldli~T~dG 47 (272)
T PF09743_consen 27 IEIVNKLIEKKLLDLIHTTDG 47 (272)
T ss_pred HHHHHHHHHcCCeeEEEECCC
Confidence 389999999999999999999
No 57
>PF00867 XPG_I: XPG I-region; InterPro: IPR006086 This entry represents endonucleases that cleave the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. Has 5'-endo-/exonuclease and 5'-pseudo-Y-endonuclease activities. Cleaves the junction between single and double-stranded regions of flap DNA. The endonuclease binds 2 magnesium ions per subunit. which probably participate in the reaction catalyzed by the enzyme. May bind an additional third magnesium ion after substrate binding.; GO: 0004518 nuclease activity, 0006281 DNA repair; PDB: 1UL1_Z 3Q8K_A 3Q8M_A 3Q8L_A 2IZO_A 1A77_A 1A76_A 3QEA_Z 3QE9_Y 3QEB_Z ....
Probab=34.72 E-value=26 Score=28.57 Aligned_cols=17 Identities=35% Similarity=0.599 Sum_probs=15.0
Q ss_pred HHHHHHhcCceeEEEeC
Q 017671 114 TVRYLVQHHMVDVVVTT 130 (368)
Q Consensus 114 ~i~~Li~~~~VD~IVtT 130 (368)
-+++|.++|+||+|+|.
T Consensus 17 q~A~L~~~g~vd~V~t~ 33 (94)
T PF00867_consen 17 QCAYLERNGLVDAVITE 33 (94)
T ss_dssp HHHHHHHTTSSSEEE-S
T ss_pred HHHHHHHhcceeEEEec
Confidence 58899999999999997
No 58
>PF00475 IGPD: Imidazoleglycerol-phosphate dehydratase; InterPro: IPR000807 Imidazoleglycerol-phosphate dehydratase is the enzyme that catalyses the seventh step in the biosynthesis of histidine in bacteria, fungi and plants. In most organisms it is a monofunctional protein of about 22 to 29 kD. In some bacteria such as Escherichia coli, it is the C-terminal domain of a bifunctional protein that include a histidinol-phosphatase domain [].; GO: 0004424 imidazoleglycerol-phosphate dehydratase activity, 0000105 histidine biosynthetic process; PDB: 2F1D_G 2AE8_A 1RHY_B.
Probab=34.52 E-value=30 Score=31.31 Aligned_cols=54 Identities=31% Similarity=0.511 Sum_probs=35.6
Q ss_pred HHHHHHHhcCceeEEEeCCCchh-------HHHHHhhcCccccCCCCCchhH-HhCCCcceeeeeecCc
Q 017671 113 DTVRYLVQHHMVDVVVTTAGGIE-------EDLVKCLAPTFKGDFALPGAYL-RSKGLNRIGNLLVPND 173 (368)
Q Consensus 113 ~~i~~Li~~~~VD~IVtTgg~le-------hDi~~~l~~~y~G~~~~dd~~L-r~~ginRigdv~ip~e 173 (368)
.++..|.+++.+|.-|..-|-++ ||+.-+||.-+. ..| -+.||+|.|+-++|-+
T Consensus 8 HML~~la~h~~~dl~v~a~GDl~vD~HHtvEDvgI~LG~al~-------~aLgdk~GI~Ryg~a~~PMD 69 (145)
T PF00475_consen 8 HMLEQLAKHGGFDLSVKAKGDLEVDDHHTVEDVGIVLGQALR-------QALGDKRGINRYGSASVPMD 69 (145)
T ss_dssp HHHHHHHHHHT-EEEEEEEC-TTT-CHHHHHHHHHHHHHHHH-------HHHTT-TTB--EEEEEEEET
T ss_pred HHHHHHHHHCCCCEEEEEeCCCCcCcceehhhHHHHHHHHHH-------HHhccccCceeeeccccchh
Confidence 47889999999999999888765 566666664321 122 1479999999999943
No 59
>PRK06242 flavodoxin; Provisional
Probab=34.18 E-value=1.6e+02 Score=25.11 Aligned_cols=38 Identities=11% Similarity=0.039 Sum_probs=24.0
Q ss_pred eEEEcc---ccccchhhhHHHHHHHHh-cCceeEEEeCCCchh
Q 017671 97 KVFLGF---TSNLISSGVRDTVRYLVQ-HHMVDVVVTTAGGIE 135 (368)
Q Consensus 97 tIfL~~---tgnmvssGlr~~i~~Li~-~~~VD~IVtTgg~le 135 (368)
.|+||. .+.+ +..++..|..|-. ++..=++++|+|+-.
T Consensus 46 ~ii~g~pvy~~~~-~~~~~~fl~~~~~~~~k~~~~f~t~g~~~ 87 (150)
T PRK06242 46 LIGFGSGIYFGKF-HKSLLKLIEKLPPVSGKKAFIFSTSGLPF 87 (150)
T ss_pred EEEEeCchhcCCc-CHHHHHHHHhhhhhcCCeEEEEECCCCCc
Confidence 445554 3444 5678888876643 455668888888644
No 60
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=33.39 E-value=4.6e+02 Score=28.14 Aligned_cols=275 Identities=13% Similarity=0.105 Sum_probs=0.0
Q ss_pred CCCHHHHHHHHhhcCcccccHHHHHHHHHHHHhccccCCCCCcccccccCCccccccccceEEEccccccchhhhHHHHH
Q 017671 37 GVNYSQLLKSMVSTGFQASNFGDAIEVVNQMLDWRLADEVIPEDCDERERDPEYRKSVRCKVFLGFTSNLISSGVRDTVR 116 (368)
Q Consensus 37 ~~~~~~L~~~~~~~GFqA~~l~~A~~i~~~M~~~~~~d~~~~~~~~~~~~~~~~~~~~~~tIfL~~tgnmvssGlr~~i~ 116 (368)
++|+.++++.+....| -..=.+++.+++. ....|+-+=-|.....--|+.++
T Consensus 46 g~si~eif~~~Ge~~F----R~~E~~~l~~~~~------------------------~~~~VIs~GGG~v~~~~n~~~L~ 97 (542)
T PRK14021 46 GMSIPSYFEEYGEPAF----REVEADVVADMLE------------------------DFDGIFSLGGGAPMTPSTQHALA 97 (542)
T ss_pred CcCHHHHHHHHHHHHH----HHHHHHHHHHHHh------------------------cCCeEEECCCchhCCHHHHHHHH
Q ss_pred -HHHhcCceeEEEeCCCchhHHHHHhhc-CccccCCCCCchhHHhCC---CcceeeeeecCccHHHHHHHHHHHHHHHHH
Q 017671 117 -YLVQHHMVDVVVTTAGGIEEDLVKCLA-PTFKGDFALPGAYLRSKG---LNRIGNLLVPNDNYCKFEDWIIPIFDQMLK 191 (368)
Q Consensus 117 -~Li~~~~VD~IVtTgg~lehDi~~~l~-~~y~G~~~~dd~~Lr~~g---inRigdv~ip~e~y~~~E~~i~~il~~l~~ 191 (368)
+|-++|.|=.+-++--.+.+-+...=. |.+.++....=.+|++.. +.+..|..|+.++. ..++.+..|++.+..
T Consensus 98 ~~~~~~g~vv~L~~~~~~l~~Rl~~~~~RPll~~~~~~~~~~l~~~R~~~Y~~~Ad~~i~~~~~-~~~~~~~~i~~~~~~ 176 (542)
T PRK14021 98 SYIAHGGRVVYLDADPKEAMERANRGGGRPMLNGDANKRWKKLFKQRDPVFRQVANVHVHTRGL-TPQAAAKKLIDMVAE 176 (542)
T ss_pred HHHhcCCEEEEEECCHHHHHHHHhCCCCCCCCCCCcHHHHHHHHHHHHHHHHhhCCEEEECCCC-CHHHHHHHHHHHHHh
Q ss_pred hhcccCccc-CHHHHHHHhccccCCCchHHHHHHHCCCceecCCCCchhHHHHHHHhHhcCCCcEe------eh-----H
Q 017671 192 EQNEEEISW-TPSKVIARLGKEINDESSYLYWAYKNNIPVFCPGLTDGSLGDMLYFHSFRSPGLII------DI-----V 259 (368)
Q Consensus 192 ~q~~~~~~~-t~~e~~~~lG~~i~~e~Sil~~A~k~~VPVf~Pa~tDgsiG~~l~~~~~~~~~~~~------D~-----v 259 (368)
..-.... .....-..+|..+-++-+=+......++.|.+-....- .+..+--.-... ++.+ +- +
T Consensus 177 --~~~~v~~~~~~p~~v~iG~g~l~~l~~~l~~~g~k~~iV~d~~v~~-~~~~l~~~L~~~-g~~v~~~v~p~~E~~ksl 252 (542)
T PRK14021 177 --RTVHVTGAGIEPYDVRIGEGAMNHLPQVLGPKPVKVALIHTQPVQR-HSDRARTLLRQG-GYEVSDIVIPDAEAGKTI 252 (542)
T ss_pred --cceEeecCCCCCceEEEcCChHHHHHHHHHhcCCeEEEEECccHHH-HHHHHHHHHHhC-CCceEEEEeCCCcccCCH
Q ss_pred HHHHHHHHHHhhcCCCceeEEE-EcCCCchhhhhhccc-ccCCceEEEEEecC-CCCCCCCCCCCccchhhcccccCCC-
Q 017671 260 QDIRAINGEAVHASPRKTGLII-LGGGLPKHHICNANM-MRNGADYAVFINTA-QEFDGSDSGARPDEAVSWGKIRGSA- 335 (368)
Q Consensus 260 ~D~~~l~~i~~~s~~~~~G~ii-lGGGVpKh~i~~~~l-~r~G~DYaVqItta-~e~dGslSGA~p~EAiSWGKi~~~a- 335 (368)
..+.++.+.....+..+..+|+ +|||++=.-.=-+.. +..|..|...=||- .--|+|.+|-+ +|.-..-+.-.
T Consensus 253 ~~v~~~~~~l~~~~~~r~D~IIAIGGGsv~D~AKfvA~~y~rGi~~i~vPTTllA~vDss~ggkt---~in~~~gkn~ig 329 (542)
T PRK14021 253 EVANGIWQRLGNEGFTRSDAIVGLGGGAATDLAGFVAATWMRGIRYVNCPTSLLAMVDASTGGKT---GINTPQGKNLVG 329 (542)
T ss_pred HHHHHHHHHHHhcCCCCCcEEEEEcChHHHHHHHHHHHHHHcCCCEEEeCChHHhhhccccCCce---EEECCCCceeEe
Q ss_pred ---CcEEEEeehhhh
Q 017671 336 ---KTVKVHCDATIA 347 (368)
Q Consensus 336 ---~~v~V~~DATIv 347 (368)
.+..|++|.+++
T Consensus 330 ~f~~P~~V~iD~~~l 344 (542)
T PRK14021 330 SFYTPAGVLADTKTL 344 (542)
T ss_pred eecCCCEEEEeHHHH
No 61
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=33.23 E-value=41 Score=34.76 Aligned_cols=48 Identities=29% Similarity=0.380 Sum_probs=39.3
Q ss_pred cceEEEccccccchhhhHHHHHHHHhcCc-eeEEEeCCCc--hhHHHHHhh
Q 017671 95 RCKVFLGFTSNLISSGVRDTVRYLVQHHM-VDVVVTTAGG--IEEDLVKCL 142 (368)
Q Consensus 95 ~~tIfL~~tgnmvssGlr~~i~~Li~~~~-VD~IVtTgg~--lehDi~~~l 142 (368)
+-+|.|++||+.-.--.-++++.|.+.|. |.+|+|-+|- +....++.+
T Consensus 3 ~k~IllgiTGSiaa~~~~~ll~~L~~~g~~V~vv~T~~A~~fv~~~~l~~~ 53 (390)
T TIGR00521 3 NKKILLGVTGGIAAYKTVELVRELVRQGAEVKVIMTEAAKKFITPLTLEAL 53 (390)
T ss_pred CCEEEEEEeCHHHHHHHHHHHHHHHhCCCEEEEEECHhHHHHHHHHHHHHh
Confidence 46899999999888888889999999886 9999998884 555555554
No 62
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=32.88 E-value=43 Score=34.70 Aligned_cols=50 Identities=22% Similarity=0.279 Sum_probs=41.0
Q ss_pred ccceEEEccccccchhhhHHHHHHHHhcCc-eeEEEeCCCc--hhHHHHHhhc
Q 017671 94 VRCKVFLGFTSNLISSGVRDTVRYLVQHHM-VDVVVTTAGG--IEEDLVKCLA 143 (368)
Q Consensus 94 ~~~tIfL~~tgnmvssGlr~~i~~Li~~~~-VD~IVtTgg~--lehDi~~~l~ 143 (368)
.+-+|.|++||+.-.-..-++++.|.+.|. |.+|.|.+|. +..+-++.+.
T Consensus 5 ~~k~IllgvTGsiaa~k~~~lv~~L~~~g~~V~vv~T~~A~~fi~~~~l~~l~ 57 (399)
T PRK05579 5 AGKRIVLGVSGGIAAYKALELVRRLRKAGADVRVVMTEAAKKFVTPLTFQALS 57 (399)
T ss_pred CCCeEEEEEeCHHHHHHHHHHHHHHHhCCCEEEEEECHhHHHHHhHHHHHHhh
Confidence 346899999999988888899999999985 8999999885 6666666663
No 63
>TIGR02852 spore_dpaB dipicolinic acid synthetase, B subunit. Members of this family represent the B subunit of dipicolinic acid synthetase, an enzyme that synthesizes a small molecule that appears to confer heat stability to bacterial endospores such as those of Bacillus subtilis. The A and B subunits are together in what was originally designated the spoVF locus for stage V of endospore formation.
Probab=31.21 E-value=49 Score=30.91 Aligned_cols=37 Identities=16% Similarity=0.178 Sum_probs=29.9
Q ss_pred eEEEccccccchhhh-HHHHHHHHhcC-ceeEEEeCCCc
Q 017671 97 KVFLGFTSNLISSGV-RDTVRYLVQHH-MVDVVVTTAGG 133 (368)
Q Consensus 97 tIfL~~tgnmvssGl-r~~i~~Li~~~-~VD~IVtTgg~ 133 (368)
+|.|++||+.-+=-- .++++.|++.| -|.+|+|.+|-
T Consensus 2 ~I~lgITGs~~a~~a~~~ll~~L~~~g~~V~vI~S~~A~ 40 (187)
T TIGR02852 2 RIGFGLTGSHCTLEAVMPQLEKLVDEGAEVTPIVSETVQ 40 (187)
T ss_pred EEEEEEecHHHHHHHHHHHHHHHHhCcCEEEEEEchhHH
Confidence 689999997665555 47899999987 78899998884
No 64
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=31.14 E-value=41 Score=31.73 Aligned_cols=118 Identities=13% Similarity=0.145 Sum_probs=60.3
Q ss_pred ccccchhh----hHHHHHHHHhcC-ce----eEEEeCCCc--hhHHHHHhhcCccccCCCCCchhHHhCCCccee--eee
Q 017671 103 TSNLISSG----VRDTVRYLVQHH-MV----DVVVTTAGG--IEEDLVKCLAPTFKGDFALPGAYLRSKGLNRIG--NLL 169 (368)
Q Consensus 103 tgnmvssG----lr~~i~~Li~~~-~V----D~IVtTgg~--lehDi~~~l~~~y~G~~~~dd~~Lr~~ginRig--dv~ 169 (368)
++|+...| ..+++..+.+.. +. ..|+-|||- +..|+...+. ..+++.|++-.= |=+
T Consensus 9 ~~a~~~~g~~~t~eel~~~~~~~~~f~~~sggGVt~SGGEPllq~~fl~~l~-----------~~~k~~gi~~~leTnG~ 77 (213)
T PRK10076 9 SGAFERIGRDITLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATRFL-----------QRLRLWGVSCAIETAGD 77 (213)
T ss_pred hhHHHhcCcccCHHHHHHHHHhhhHhhcCCCCEEEEeCchHHcCHHHHHHHH-----------HHHHHcCCCEEEECCCC
Confidence 45555555 356677666653 22 488888883 6666554332 134555653322 223
Q ss_pred ecCccHHHHHHHHHHHHHHHHHhhcccCcccCHHHHHHHhccccCCCchHHHHHHHCCCcee-----cCCCCchh
Q 017671 170 VPNDNYCKFEDWIIPIFDQMLKEQNEEEISWTPSKVIARLGKEINDESSYLYWAYKNNIPVF-----CPGLTDGS 239 (368)
Q Consensus 170 ip~e~y~~~E~~i~~il~~l~~~q~~~~~~~t~~e~~~~lG~~i~~e~Sil~~A~k~~VPVf-----~Pa~tDgs 239 (368)
+|.+.+..+ .+.++...- +=..|.+..+.+.-|.....=-.-+.++.+++++|. +||++|+.
T Consensus 78 ~~~~~~~~l----~~~~D~~l~----DiK~~d~~~~~~~tG~~~~~il~nl~~l~~~g~~v~iR~~vIPg~nd~~ 144 (213)
T PRK10076 78 APASKLLPL----AKLCDEVLF----DLKIMDATQARDVVKMNLPRVLENLRLLVSEGVNVIPRLPLIPGFTLSR 144 (213)
T ss_pred CCHHHHHHH----HHhcCEEEE----eeccCCHHHHHHHHCCCHHHHHHHHHHHHhCCCcEEEEEEEECCCCCCH
Confidence 343333222 122221111 112456654444456332111223577889999986 89999874
No 65
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=30.63 E-value=95 Score=30.47 Aligned_cols=63 Identities=21% Similarity=0.282 Sum_probs=43.4
Q ss_pred HHHHHHHHHHhccccCCCCCcccccccCCccccccccceEEEccccccchhh-----------hHHHHHHHHhcCceeEE
Q 017671 59 DAIEVVNQMLDWRLADEVIPEDCDERERDPEYRKSVRCKVFLGFTSNLISSG-----------VRDTVRYLVQHHMVDVV 127 (368)
Q Consensus 59 ~A~~i~~~M~~~~~~d~~~~~~~~~~~~~~~~~~~~~~tIfL~~tgnmvssG-----------lr~~i~~Li~~~~VD~I 127 (368)
++++-+++.++.+.+ +..|+++|||+||-.- +.+.+..|.++|+=+++
T Consensus 18 ~ti~~ie~~~~~~fp---------------------~~~V~~AfTS~~I~~kl~~~~g~~i~~~~eaL~~L~~~G~~~V~ 76 (262)
T PF06180_consen 18 KTIDAIEKAVREAFP---------------------DYDVRRAFTSRIIRKKLAERDGIKIDSPEEALAKLADEGYTEVV 76 (262)
T ss_dssp HHHHHHHHHHHHCST---------------------TSEEEEEES-HHHHHHHHHCHT-----HHHHHHHHHHCT--EEE
T ss_pred HHHHHHHHHHHHHCC---------------------CCcEEEEchHHHHHHHHHhcCCCCcCCHHHHHHHHHHCCCCEEE
Confidence 367777777775543 4899999999999433 34678999999999998
Q ss_pred EeC----CCchhHHHHHhh
Q 017671 128 VTT----AGGIEEDLVKCL 142 (368)
Q Consensus 128 VtT----gg~lehDi~~~l 142 (368)
|-+ .|.=+|++.+.+
T Consensus 77 VQplhiipG~Ey~~l~~~v 95 (262)
T PF06180_consen 77 VQPLHIIPGEEYEKLRATV 95 (262)
T ss_dssp EEE--SCSSHHHHHHHHHH
T ss_pred EeecceeCcHhHHHHHHHH
Confidence 854 455566666655
No 66
>PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].; GO: 0003824 catalytic activity, 0051536 iron-sulfur cluster binding; PDB: 2A5H_D 3T7V_A 3C8F_A 3CB8_A 2FB2_A 2FB3_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A ....
Probab=30.18 E-value=91 Score=25.71 Aligned_cols=27 Identities=26% Similarity=0.463 Sum_probs=16.3
Q ss_pred HHhCCCcceeeee--ecCccHHHHHHHHH
Q 017671 157 LRSKGLNRIGNLL--VPNDNYCKFEDWII 183 (368)
Q Consensus 157 Lr~~ginRigdv~--ip~e~y~~~E~~i~ 183 (368)
|++.|+.+++..+ +|.++...+++.++
T Consensus 136 l~~~g~~~~~~~i~~~~~~~~~e~~~~~~ 164 (166)
T PF04055_consen 136 LKEAGIPRVIIFIVGLPGENDEEIEETIR 164 (166)
T ss_dssp HHHTTSETEEEEEEEBTTTSHHHHHHHHH
T ss_pred HHHcCCCcEEEEEEEeCCCCHHHHHHHhC
Confidence 6777777544433 26677766666554
No 67
>PLN02891 IMP cyclohydrolase
Probab=29.97 E-value=1.2e+02 Score=33.09 Aligned_cols=104 Identities=22% Similarity=0.284 Sum_probs=62.5
Q ss_pred hhhhHHHHHHHHhcCceeEEEeCCCc---hhHH------H-------------HHhhcCccc-cCCC-----CCchhHHh
Q 017671 108 SSGVRDTVRYLVQHHMVDVVVTTAGG---IEED------L-------------VKCLAPTFK-GDFA-----LPGAYLRS 159 (368)
Q Consensus 108 ssGlr~~i~~Li~~~~VD~IVtTgg~---lehD------i-------------~~~l~~~y~-G~~~-----~dd~~Lr~ 159 (368)
=+|+-++-+.|++.|+ -|++|||+ |.+- + .|.|.|.-. |-.. .+-.+|.+
T Consensus 32 Ktgi~~fAk~L~~~gv--eIiSTgGTak~L~e~Gi~v~~Vsd~TgfPEiL~GRVKTLHPkIhgGILa~r~~~~h~~~l~~ 109 (547)
T PLN02891 32 KTDLALLANGLQELGY--TIVSTGGTASALEAAGVSVTKVEELTNFPEMLDGRVKTLHPAVHGGILARRDQEHHMEALNE 109 (547)
T ss_pred ccCHHHHHHHHHHCCC--EEEEcchHHHHHHHcCCceeeHHhccCCchhhCCcccccCchhhhhhhcCCCCHHHHHHHHH
Confidence 3899999999999987 48999995 2211 1 122223222 2211 12245899
Q ss_pred CCCcceeeeeecCccHHHHHHHHHHHHHHHHHhhcccCcccCHHHHHHHhccccCCCchHHHHHHHC--CCceec
Q 017671 160 KGLNRIGNLLVPNDNYCKFEDWIIPIFDQMLKEQNEEEISWTPSKVIARLGKEINDESSYLYWAYKN--NIPVFC 232 (368)
Q Consensus 160 ~ginRigdv~ip~e~y~~~E~~i~~il~~l~~~q~~~~~~~t~~e~~~~lG~~i~~e~Sil~~A~k~--~VPVf~ 232 (368)
+||..|==|++ |+..||+.+.. . ..+..+.+..+ .| --.|.|++|+|| +|.|.|
T Consensus 110 ~~I~~IDlVvV---NLYPF~~tv~~-------~------~~~~ee~IEnI--DI-GGpsmlRAAAKN~~~V~Vv~ 165 (547)
T PLN02891 110 HGIGTIDVVVV---NLYPFYDTVTS-------G------GISFEDGVENI--DI-GGPAMIRAAAKNHKDVLVVV 165 (547)
T ss_pred cCCCceeeEEE---eccChHHHHhc-------C------CCCHHHHHHhc--cC-CcHHHHHHHHhCCCCeEEEC
Confidence 99999865665 44445554432 0 12344555444 11 257999999999 887765
No 68
>TIGR00269 conserved hypothetical protein TIGR00269.
Probab=29.89 E-value=74 Score=26.56 Aligned_cols=54 Identities=19% Similarity=0.353 Sum_probs=38.3
Q ss_pred CCchHHHHHHHCCCcee---cCCCCchhHHH---HHHHhHhcCCCcEeehHHHHHHHHHH
Q 017671 215 DESSYLYWAYKNNIPVF---CPGLTDGSLGD---MLYFHSFRSPGLIIDIVQDIRAINGE 268 (368)
Q Consensus 215 ~e~Sil~~A~k~~VPVf---~Pa~tDgsiG~---~l~~~~~~~~~~~~D~v~D~~~l~~i 268 (368)
.|.=|+.+|..+|+|++ ||.-.++.=+. .|.-...++|++..+++.-+..+...
T Consensus 11 ~E~ei~~ya~~~~lp~~~~~CP~~~~a~R~~~k~~L~~LE~~~P~~k~~i~~s~~~~~~~ 70 (104)
T TIGR00269 11 PEKEVVLYAFLNELKVHLDECPYSSLSVRARIRDFLYDLENKKPGVKFSVLRGFEKLIPL 70 (104)
T ss_pred CHHHHHHHHHHcCCCcCCCCCCCCCCCchHHHHHHHHHHHHHCcChHHHHHHHHHHHHHH
Confidence 36678899999999999 99754444343 34444456788988888877766644
No 69
>KOG4062 consensus 6-O-methylguanine-DNA methyltransferase MGMT/MGT1, involved in DNA repair [Replication, recombination and repair]
Probab=29.31 E-value=73 Score=29.62 Aligned_cols=79 Identities=13% Similarity=0.091 Sum_probs=54.2
Q ss_pred CchhHHhCCCcceeeeeecCccH-----HHHHHHHHHHHHHHHHhhcccCcccCHHHHHHHhccccCCCchHHHHHHHCC
Q 017671 153 PGAYLRSKGLNRIGNLLVPNDNY-----CKFEDWIIPIFDQMLKEQNEEEISWTPSKVIARLGKEINDESSYLYWAYKNN 227 (368)
Q Consensus 153 dd~~Lr~~ginRigdv~ip~e~y-----~~~E~~i~~il~~l~~~q~~~~~~~t~~e~~~~lG~~i~~e~Sil~~A~k~~ 227 (368)
.+.+-.+++||-..+.+-.++.+ -.-++|-+.+|+.+.+-. .+...|-+++-+++|.-- .-.++=.+++.|+
T Consensus 57 k~~~t~k~~i~~yf~~le~~~~~p~~~~~~~t~F~~kVw~al~~i~--~Gev~tY~~iA~~iG~Ps-aaRaVg~A~~~n~ 133 (178)
T KOG4062|consen 57 KPLMTCKAWINAYFHQLEAIEEFPVHPVMRGTDFQRKVWDALCEIP--YGEVSTYGQIARRIGNPS-AARAVGSAMAHNN 133 (178)
T ss_pred CcchHHHHHHHHHHhChhhcccCCccceeccchHHHHHHHHHhccC--CCceeeHHHHHHHhCCcH-HHHHHHHHHccCC
Confidence 44455666666655554333322 345778888998875543 355678889999999432 1478899999999
Q ss_pred CceecCC
Q 017671 228 IPVFCPG 234 (368)
Q Consensus 228 VPVf~Pa 234 (368)
+|+.+|=
T Consensus 134 la~lvPc 140 (178)
T KOG4062|consen 134 LAILVPC 140 (178)
T ss_pred CcEEecc
Confidence 9999993
No 70
>COG5012 Predicted cobalamin binding protein [General function prediction only]
Probab=28.60 E-value=1.3e+02 Score=29.20 Aligned_cols=82 Identities=15% Similarity=0.421 Sum_probs=58.2
Q ss_pred HHHHHhhc-CcccccHHHH--HHHHHHHHhccccCCCCCcccccccCCccccccccceEEEccccccchh--hhHHHHHH
Q 017671 43 LLKSMVST-GFQASNFGDA--IEVVNQMLDWRLADEVIPEDCDERERDPEYRKSVRCKVFLGFTSNLISS--GVRDTVRY 117 (368)
Q Consensus 43 L~~~~~~~-GFqA~~l~~A--~~i~~~M~~~~~~d~~~~~~~~~~~~~~~~~~~~~~tIfL~~tgnmvss--Glr~~i~~ 117 (368)
++..|... ||..-+||+= .+-|-+-.+ + .+. -+++.|+-|+++ ++++++-.
T Consensus 123 iV~~ml~~aGfevidLG~dvP~e~fve~a~----e-------------------~k~-d~v~~SalMTttm~~~~~viE~ 178 (227)
T COG5012 123 IVATMLEAAGFEVIDLGRDVPVEEFVEKAK----E-------------------LKP-DLVSMSALMTTTMIGMKDVIEL 178 (227)
T ss_pred HHHHHHHhCCcEEEecCCCCCHHHHHHHHH----H-------------------cCC-cEEechHHHHHHHHHHHHHHHH
Confidence 67777777 9999999963 222222222 1 112 277777777664 89999999
Q ss_pred HHhcCceeEEEeC-CCc-hhHHHHHhhc-Ccccc
Q 017671 118 LVQHHMVDVVVTT-AGG-IEEDLVKCLA-PTFKG 148 (368)
Q Consensus 118 Li~~~~VD~IVtT-gg~-lehDi~~~l~-~~y~G 148 (368)
|-+.|+=|=+++= ||. +.+|+.+.+| .-|..
T Consensus 179 L~eeGiRd~v~v~vGGApvtq~~a~~iGAD~~~~ 212 (227)
T COG5012 179 LKEEGIRDKVIVMVGGAPVTQDWADKIGADAYAE 212 (227)
T ss_pred HHHcCCccCeEEeecCccccHHHHHHhCCCccCc
Confidence 9999999988887 544 9999999997 45543
No 71
>PRK05446 imidazole glycerol-phosphate dehydratase/histidinol phosphatase; Provisional
Probab=28.27 E-value=59 Score=33.24 Aligned_cols=73 Identities=21% Similarity=0.423 Sum_probs=50.4
Q ss_pred cccccceEEEcc----cc-ccchhhhH---HHHHHHHhcCceeEEEeCCCchh-------HHHHHhhcCcc---ccCCCC
Q 017671 91 RKSVRCKVFLGF----TS-NLISSGVR---DTVRYLVQHHMVDVVVTTAGGIE-------EDLVKCLAPTF---KGDFAL 152 (368)
Q Consensus 91 ~~~~~~tIfL~~----tg-nmvssGlr---~~i~~Li~~~~VD~IVtTgg~le-------hDi~~~l~~~y---~G~~~~ 152 (368)
|.-+++.|-+.+ +| +-++||+. .++..|.+|+.+|.-|..=|-++ ||+.=+||.-+ .|+
T Consensus 172 R~t~et~i~~~l~ldg~g~~~i~tgi~f~dhml~~~~~h~~~~l~v~~~gd~~vd~hh~~ed~~i~lG~a~~~alg~--- 248 (354)
T PRK05446 172 RNTKETDIDVEVWLDREGKSKINTGIGFFDHMLDQIATHGGFRLEIKVKGDLHIDDHHTVEDTALALGEALKQALGD--- 248 (354)
T ss_pred ecccceEEEEEEEeCCCCceeeecCCcHHHHHHHHHHHHcCCCeEEEEecCccccCCchHHHHHHHHHHHHHHHhcC---
Confidence 333445544443 33 45889976 59999999999999998888554 56666666433 232
Q ss_pred CchhHHhCCCcceeeeeecCc
Q 017671 153 PGAYLRSKGLNRIGNLLVPND 173 (368)
Q Consensus 153 dd~~Lr~~ginRigdv~ip~e 173 (368)
+.||+|.|. ++|-+
T Consensus 249 ------~~gi~r~g~-~~pmd 262 (354)
T PRK05446 249 ------KRGIGRFGF-VLPMD 262 (354)
T ss_pred ------ccccceeee-ccchh
Confidence 589999999 99933
No 72
>KOG3614 consensus Ca2+/Mg2+-permeable cation channels (LTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=27.03 E-value=20 Score=42.36 Aligned_cols=82 Identities=13% Similarity=0.272 Sum_probs=63.0
Q ss_pred HHHHHHHhhcCcccccHHH-----------HHHHHHHHHh-ccccCCCCCcccccccCCccccccccceEEEccccccch
Q 017671 41 SQLLKSMVSTGFQASNFGD-----------AIEVVNQMLD-WRLADEVIPEDCDERERDPEYRKSVRCKVFLGFTSNLIS 108 (368)
Q Consensus 41 ~~L~~~~~~~GFqA~~l~~-----------A~~i~~~M~~-~~~~d~~~~~~~~~~~~~~~~~~~~~~tIfL~~tgnmvs 108 (368)
..-.++|+..-||+..... ...|+.=|.+ |+++- .+...++.|.|-.
T Consensus 71 ~~pTdafG~i~F~G~~~~~akyiR~S~dt~P~~i~hLm~k~W~l~~---------------------P~LvISV~GG~~n 129 (1381)
T KOG3614|consen 71 TVPTDAFGDIVFQGGGHKPAKYIRVSYDTDPGAILHLMTKEWQLEV---------------------PKLVISVHGGLQN 129 (1381)
T ss_pred cccccceeeEEeccCCcCcceeEEeCCCCChHHHHHHHHHHhCcCC---------------------CcEEEEEecCCCC
Confidence 3456778888888887764 3456666654 77643 6778899998887
Q ss_pred hhhHHHHHHHHhcCceeEEEeCCC-----chhHHHHHhhc
Q 017671 109 SGVRDTVRYLVQHHMVDVVVTTAG-----GIEEDLVKCLA 143 (368)
Q Consensus 109 sGlr~~i~~Li~~~~VD~IVtTgg-----~lehDi~~~l~ 143 (368)
=-|..-++.+.++|+|-+-.|||| |+..+++|-+|
T Consensus 130 F~L~pkl~~~frkGLvkaAqtTGAWIiTsG~~tGv~khVg 169 (1381)
T KOG3614|consen 130 FELQPKLKSVFRKGLIKAAQTTGAWIITSGLDTGVMKHVG 169 (1381)
T ss_pred ccccHHHHHHHHHHHHHHHhhcCeEEEecCcccchHHHHH
Confidence 778888888888999999999998 78888888765
No 73
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=27.03 E-value=6.5e+02 Score=25.17 Aligned_cols=39 Identities=15% Similarity=0.231 Sum_probs=28.1
Q ss_pred ccchhhhHHHHHHHHhcCceeEEEeCCCchhHHHHHhhc
Q 017671 105 NLISSGVRDTVRYLVQHHMVDVVVTTAGGIEEDLVKCLA 143 (368)
Q Consensus 105 nmvssGlr~~i~~Li~~~~VD~IVtTgg~lehDi~~~l~ 143 (368)
.++--.+.++++.+-+.|+.-.|+|.|-.|.++.++.|.
T Consensus 73 Pll~~~~~~il~~~~~~g~~~~i~TNG~ll~~~~~~~L~ 111 (378)
T PRK05301 73 PLLRKDLEELVAHARELGLYTNLITSGVGLTEARLAALK 111 (378)
T ss_pred cCCchhHHHHHHHHHHcCCcEEEECCCccCCHHHHHHHH
Confidence 455666788888887777655666666668888887774
No 74
>TIGR01747 diampropi_NH3ly diaminopropionate ammonia-lyase family. This small subfamily includes diaminopropionate ammonia-lyase from Salmonella typhimurium and a small number of close homologs, about 50 % identical in sequence. The enzyme is a pyridoxal phosphate-binding homodimer homologous to threonine dehydratase (threonine deaminase).
Probab=26.50 E-value=75 Score=32.51 Aligned_cols=47 Identities=15% Similarity=0.208 Sum_probs=36.7
Q ss_pred cceEEEccccccchhhhHHHHH-----HHHhcCcee-----EEEeCCCchhHHHHHh
Q 017671 95 RCKVFLGFTSNLISSGVRDTVR-----YLVQHHMVD-----VVVTTAGGIEEDLVKC 141 (368)
Q Consensus 95 ~~tIfL~~tgnmvssGlr~~i~-----~Li~~~~VD-----~IVtTgg~lehDi~~~ 141 (368)
+++|+..=+|+.--++|..++. .+++.+.+| +|+.||||++.+...-
T Consensus 316 ~~~i~~epaga~~la~l~~~~~~~~~~~~~~~~~~~~~~~vvvi~t~gn~d~~~~~~ 372 (376)
T TIGR01747 316 DPRIISGESGAVGLGLLAAVMYHPQYQSLMEKLQLDKDAVVLVISTEGDTDPDHYRE 372 (376)
T ss_pred CCeEeeeCchHHHHHHHHHHHhCchHHHHHHHcCCCCCCEEEEEeCCCCCCHHHHHH
Confidence 5789999999999888886553 556665555 8999999999887763
No 75
>cd07914 IGPD Imidazoleglycerol-phosphate dehydratase. Imidazoleglycerol-phosphate dehydratase (IGPD; EC 4.2.1.19) catalyzes the dehydration of imidazole glycerol phosphate to imidazole acetol phosphate, the sixth step of histidine biosynthesis in plants and microorganisms where the histidine is synthesized de novo. There is an internal repeat in the protein domain that is related by pseudo-dyad symmetry, perhaps as a result of an ancient gene duplication. The apo-form of IGPD exists as a catalytically inactive trimer which, in the presence of specific divalent metal cations such as manganese (Mn2+), cobalt (Co2+), cadmium (Cd2+), nickel (Ni2+), iron (Fe2+) and zinc (Zn2+), assembles to form a biologically active high molecular weight metalloenzyme; a 24-mer with 4-3-2 symmetry. Each 24-mer has 24 active sites, and contains around 1.5 metal ions per monomer, each monomer contributing residues to three separate active sites. IGPD enzymes are monofunctional in fungi, plants, archaea and s
Probab=25.85 E-value=73 Score=30.11 Aligned_cols=61 Identities=31% Similarity=0.520 Sum_probs=44.0
Q ss_pred ccchhhhH---HHHHHHHhcCceeEEEeCCCchh-------HHHHHhhcCccccCCCCCchhH-HhCCCcceeeeeecC
Q 017671 105 NLISSGVR---DTVRYLVQHHMVDVVVTTAGGIE-------EDLVKCLAPTFKGDFALPGAYL-RSKGLNRIGNLLVPN 172 (368)
Q Consensus 105 nmvssGlr---~~i~~Li~~~~VD~IVtTgg~le-------hDi~~~l~~~y~G~~~~dd~~L-r~~ginRigdv~ip~ 172 (368)
+-|+||+. .++..|.+|+.+|.-|..-|-++ ||+.=+||.-+. ..| -+.||+|.|.-++|-
T Consensus 24 ~~i~TGi~FlDHML~~~a~H~~~dL~v~a~GDl~vD~HHtvEDvgI~LG~al~-------~aLgdk~GI~RyG~a~~PM 95 (190)
T cd07914 24 SKIDTGIGFFDHMLTLFARHGGFDLTVKAKGDLEVDDHHTVEDVGIVLGQALK-------KALGDKKGIRRYGSALVPM 95 (190)
T ss_pred cceecCCcHHHHHHHHHHHHcCCCeEEEEecCccccCCcchhhhHhhHHHHHH-------HHhcCccccceeEcccccc
Confidence 56889977 58999999999999999888655 444444443221 111 137999999999993
No 76
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=25.66 E-value=2.7e+02 Score=27.85 Aligned_cols=47 Identities=28% Similarity=0.296 Sum_probs=39.2
Q ss_pred ceEEEccccccchhhhHHHHHHHHhcCceeEEEeCCCchhHHHHHhhc
Q 017671 96 CKVFLGFTSNLISSGVRDTVRYLVQHHMVDVVVTTAGGIEEDLVKCLA 143 (368)
Q Consensus 96 ~tIfL~~tgnmvssGlr~~i~~Li~~~~VD~IVtTgg~lehDi~~~l~ 143 (368)
..+|-++.+|=....+.++++.+-+ .-+|+||.-||+---|+.|+++
T Consensus 54 ~~~~~~~~~~p~~~~v~~~~~~~~~-~~~d~IiaiGGGs~~D~AK~va 100 (370)
T cd08551 54 VVIFDGVEPNPTLSNVDAAVAAYRE-EGCDGVIAVGGGSVLDTAKAIA 100 (370)
T ss_pred EEEECCCCCCCCHHHHHHHHHHHHh-cCCCEEEEeCCchHHHHHHHHH
Confidence 5566678888888899998877654 4589999999999999999885
No 77
>smart00484 XPGI Xeroderma pigmentosum G I-region. domain in nucleases
Probab=25.38 E-value=56 Score=25.94 Aligned_cols=17 Identities=29% Similarity=0.604 Sum_probs=15.5
Q ss_pred HHHHHHhcCceeEEEeC
Q 017671 114 TVRYLVQHHMVDVVVTT 130 (368)
Q Consensus 114 ~i~~Li~~~~VD~IVtT 130 (368)
-.++|.++|+||+|+|.
T Consensus 17 q~A~L~~~g~vdav~s~ 33 (73)
T smart00484 17 QCAYLAKSGLVDAIITE 33 (73)
T ss_pred HHHHHHhCCCeeEEEcC
Confidence 58899999999999985
No 78
>KOG1361 consensus Predicted hydrolase involved in interstrand cross-link repair [Replication, recombination and repair]
Probab=25.26 E-value=27 Score=37.32 Aligned_cols=105 Identities=13% Similarity=0.127 Sum_probs=66.3
Q ss_pred ceeEEEeCCCchhHHHHHhhcC--ccccCCCCCchhH-----Hh-CCCccee--eeee-cCccHHHHHHHHHHHHHHHHH
Q 017671 123 MVDVVVTTAGGIEEDLVKCLAP--TFKGDFALPGAYL-----RS-KGLNRIG--NLLV-PNDNYCKFEDWIIPIFDQMLK 191 (368)
Q Consensus 123 ~VD~IVtTgg~lehDi~~~l~~--~y~G~~~~dd~~L-----r~-~ginRig--dv~i-p~e~y~~~E~~i~~il~~l~~ 191 (368)
.+|+..|=|+-+..+-.. +++ .|.|+|.++...+ .. ..|+++| +++- |.-+|+..|+.++.+.+....
T Consensus 177 ~ldAnHCPGa~mf~F~~~-~~~~~lhtGDFR~s~~m~~~p~~~~~~~i~~lyLDtTycnp~y~Fpsq~esvq~v~~~i~~ 255 (481)
T KOG1361|consen 177 LLDANHCPGAVMFLFELS-FGPCILHTGDFRASADMSKEPALTLEQTIDILYLDTTYCNPKYDFPSQEESVQEVVDVIRS 255 (481)
T ss_pred EeccccCCCceEEEeecC-CCceEEecCCcccChhhhhChHHhcCCccceEEEeecccCCCCCCccHHHHHHHHHHHHHh
Confidence 456777777766543322 232 5679998876543 33 5677766 4444 677788888888887775543
Q ss_pred hhcccCcccCHHHHHHHhccccCCCchHHHHHHHCCCceecC
Q 017671 192 EQNEEEISWTPSKVIARLGKEINDESSYLYWAYKNNIPVFCP 233 (368)
Q Consensus 192 ~q~~~~~~~t~~e~~~~lG~~i~~e~Sil~~A~k~~VPVf~P 233 (368)
....+ +.-++.-.-+.|.+|+=++.-|.+.+.|||+=
T Consensus 256 ~~~~~-----~~~Li~v~~ysiGkE~l~~eia~~l~~kI~v~ 292 (481)
T KOG1361|consen 256 HASKN-----DRVLIVVGTYSIGKEKLLLEIARILNSKIWVE 292 (481)
T ss_pred hhhhC-----CceEEEEEEEecchhHHHHHHHHHhCCceEEe
Confidence 32211 21222222256778888899999999999986
No 79
>PRK14498 putative molybdopterin biosynthesis protein MoeA/LysR substrate binding-domain-containing protein; Provisional
Probab=25.19 E-value=94 Score=33.70 Aligned_cols=77 Identities=21% Similarity=0.359 Sum_probs=45.4
Q ss_pred hhHHHHHHHHhcCceeEEEeCCCc------hhHHHHHhhcC-ccccCCCCCchhHHhCCCcceeeeee---c---CccHH
Q 017671 110 GVRDTVRYLVQHHMVDVVVTTAGG------IEEDLVKCLAP-TFKGDFALPGAYLRSKGLNRIGNLLV---P---NDNYC 176 (368)
Q Consensus 110 Glr~~i~~Li~~~~VD~IVtTgg~------lehDi~~~l~~-~y~G~~~~dd~~Lr~~ginRigdv~i---p---~e~y~ 176 (368)
-+++.|..+++ -.|+||||||. +-.++++.+|. +|.|-.-..++.+ ...++++++| | ...+.
T Consensus 241 ~i~~~l~~~~~--~~D~iIttGG~s~g~~D~~~~~l~~~g~~~~~~v~~~PG~~~---~~g~~~~~~v~~LPG~p~aa~~ 315 (633)
T PRK14498 241 ELEAALRKALK--ECDLVLLSGGTSAGAGDVTYRVIEELGEVLVHGVAIKPGKPT---ILGVIGGKPVVGLPGYPVSALT 315 (633)
T ss_pred HHHHHHHHHHh--cCCEEEECCCCcCCCcccHHHHHHhcCCEEEeeEeecCCCCE---EEEEECCEEEEECCCCHHHHHH
Confidence 35666666665 48999999994 45566666663 2222111122211 2333445543 4 44467
Q ss_pred HHHHHHHHHHHHHHH
Q 017671 177 KFEDWIIPIFDQMLK 191 (368)
Q Consensus 177 ~~E~~i~~il~~l~~ 191 (368)
-|+.++.|++..+..
T Consensus 316 ~~~~~v~P~l~~l~g 330 (633)
T PRK14498 316 IFEEFVAPLLRKLAG 330 (633)
T ss_pred HHHHHHHHHHHHhcC
Confidence 788899999998854
No 80
>PRK09224 threonine dehydratase; Reviewed
Probab=24.53 E-value=1.2e+02 Score=32.40 Aligned_cols=47 Identities=11% Similarity=0.153 Sum_probs=36.1
Q ss_pred cceEEEccccccchhhhHHHHHHH-HhcCceeEEEeCCCchhHHHHHhh
Q 017671 95 RCKVFLGFTSNLISSGVRDTVRYL-VQHHMVDVVVTTAGGIEEDLVKCL 142 (368)
Q Consensus 95 ~~tIfL~~tgnmvssGlr~~i~~L-i~~~~VD~IVtTgg~lehDi~~~l 142 (368)
+..+++.-+|+..-+|+....... ++ +.-=++|.||||++-+..+-+
T Consensus 270 ~~~~~~epagA~~lAal~~~~~~~~~~-g~~vv~i~sG~n~~~~~l~~~ 317 (504)
T PRK09224 270 DTRSIAEPAGALALAGLKKYVAQHGIE-GETLVAILSGANMNFDRLRYV 317 (504)
T ss_pred hcCeEEcHHHHHHHHHHHHhhhhcCCC-CCeEEEEECCCCCCHHHHHHH
Confidence 377899999999999988766543 23 556688999999998877743
No 81
>TIGR00589 ogt O-6-methylguanine DNA methyltransferase. All proteins in this family for which functions are known are involved alkyl-DNA transferases which remove alkyl groups from DNA as part of alkylation DNA repair. Some of the proteins in this family are also transcription regulators and have a distinct transcription regulatory domain. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=24.27 E-value=1.6e+02 Score=23.73 Aligned_cols=59 Identities=14% Similarity=0.126 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHhhcccCcccCHHHHHHHhccccCCCchHHHHHHHCCCceecCC----CCchhHHH
Q 017671 181 WIIPIFDQMLKEQNEEEISWTPSKVIARLGKEINDESSYLYWAYKNNIPVFCPG----LTDGSLGD 242 (368)
Q Consensus 181 ~i~~il~~l~~~q~~~~~~~t~~e~~~~lG~~i~~e~Sil~~A~k~~VPVf~Pa----~tDgsiG~ 242 (368)
|-+.+++.+.. =..+...|-.++-..+|..- ....+-.++.+|.+|+++|- -.||++|.
T Consensus 3 f~~~V~~~l~~--IP~G~v~TYg~iA~~~g~p~-~~RaVg~al~~np~~~~iPcHRVv~s~G~l~~ 65 (80)
T TIGR00589 3 FQQRVWQALRT--IPYGETKSYGQLAARIGNPK-AVRAVGGANGRNPLAILVPCHRVIGKNGSLTG 65 (80)
T ss_pred HHHHHHHHHhC--CCCCCcCCHHHHHHHhCCCC-hHHHHHHHHHhCCCCCCCCCceeECCCCCCCC
Confidence 44556665532 22355678888888888532 34789999999999999998 56777764
No 82
>TIGR02699 archaeo_AfpA archaeoflavoprotein AfpA. The prototypical member of this archaeal protein family is AF1518 from Archaeoglobus fulgidus. This homodimer with two non-covalently bound FMN cofactors can receive electrons from ferredoxin, but not from a number of other electron donors such as NADH or rubredoxin. It can then donate electrons to various reductases.
Probab=24.21 E-value=70 Score=29.54 Aligned_cols=35 Identities=20% Similarity=0.354 Sum_probs=25.9
Q ss_pred eEEEccccccchhhhHHHHHHHH----hcCc-eeEEEeCCCc
Q 017671 97 KVFLGFTSNLISSGVRDTVRYLV----QHHM-VDVVVTTAGG 133 (368)
Q Consensus 97 tIfL~~tgnmvssGlr~~i~~Li----~~~~-VD~IVtTgg~ 133 (368)
+|.+++||+ ..++.+++..|. ++|+ |++++|-+|.
T Consensus 1 ~i~~gitGs--g~~l~e~v~~l~~L~~~~g~eV~vv~S~~A~ 40 (174)
T TIGR02699 1 RIAWGITGS--GDKLPETYSIMKDVKNRYGDEIDVFLSKAGE 40 (174)
T ss_pred CEEEEEEcc--HHHHHHHHHHHHHHHHhcCCEEEEEECHhHH
Confidence 477899996 566776665555 4464 9999999996
No 83
>cd00885 cinA Competence-damaged protein. CinA is the first gene in the competence- inducible (cin) operon and is thought to be specifically required at some stage in the process of transformation. This domain is closely related to a domain, found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, where the domain is presumed to bind molybdopterin.
Probab=23.88 E-value=63 Score=29.31 Aligned_cols=22 Identities=27% Similarity=0.462 Sum_probs=17.1
Q ss_pred hhHHHHHHHHhcCceeEEEeCCCc
Q 017671 110 GVRDTVRYLVQHHMVDVVVTTAGG 133 (368)
Q Consensus 110 Glr~~i~~Li~~~~VD~IVtTgg~ 133 (368)
-+++.|+.+.++ .|+||||||.
T Consensus 47 ~I~~~l~~~~~~--~dlVIttGG~ 68 (170)
T cd00885 47 RIAEALRRASER--ADLVITTGGL 68 (170)
T ss_pred HHHHHHHHHHhC--CCEEEECCCC
Confidence 366777777763 8999999984
No 84
>PRK14491 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoeA; Provisional
Probab=23.62 E-value=96 Score=33.82 Aligned_cols=77 Identities=19% Similarity=0.290 Sum_probs=43.8
Q ss_pred hhHHHHHHHHhcCceeEEEeCCCc------hhHHHHHhhcC-ccccCCCCCchhHHhCCCcceeeeee------cCccHH
Q 017671 110 GVRDTVRYLVQHHMVDVVVTTAGG------IEEDLVKCLAP-TFKGDFALPGAYLRSKGLNRIGNLLV------PNDNYC 176 (368)
Q Consensus 110 Glr~~i~~Li~~~~VD~IVtTgg~------lehDi~~~l~~-~y~G~~~~dd~~Lr~~ginRigdv~i------p~e~y~ 176 (368)
-+++.|+.+++ -.|+||||||. +-.++++.+|. .|.|-.--.++.+ .+-.+++..| |...+.
T Consensus 422 ~i~~~l~~a~~--~~DlIIttGG~s~G~~D~~~~al~~lG~i~f~~v~~kPGkp~---~~g~~~~~~v~~LPGnP~aa~~ 496 (597)
T PRK14491 422 ALEATLEQAAA--QADVVISSGGVSVGDADYIKTALAKLGQIDFWRINMRPGRPL---AFGQIGDSPFFGLPGNPVAVMV 496 (597)
T ss_pred HHHHHHHHhhh--cCCEEEEcCCccCCCcccHHHHHHhcCcEEEEEEEeecCCcE---EEEEECCEEEEEccCCcHHHHH
Confidence 35556666654 38999999994 34555666652 2222111122221 1222334443 455677
Q ss_pred HHHHHHHHHHHHHHH
Q 017671 177 KFEDWIIPIFDQMLK 191 (368)
Q Consensus 177 ~~E~~i~~il~~l~~ 191 (368)
-|+.++.|++..|..
T Consensus 497 ~~~~~v~P~l~~l~g 511 (597)
T PRK14491 497 SFLQFVEPALRKLAG 511 (597)
T ss_pred HHHHHHHHHHHHHcC
Confidence 889999999988743
No 85
>PF07005 DUF1537: Protein of unknown function, DUF1537; InterPro: IPR010737 This entry represents a conserved region found in a range of Proteobacteria as well as the Gram-positive Oceanobacillus iheyensis. This entry includes YgbK from Escherichia coli, which is dependent upon FlhDC, the master regulator of the flagellar genes. The ygbK gene appears to be regulated by sigmaF [].; PDB: 3DQQ_B 1YZY_B.
Probab=23.59 E-value=86 Score=28.93 Aligned_cols=37 Identities=16% Similarity=0.305 Sum_probs=33.5
Q ss_pred chhhhHHHHHHHHhcCceeEEEeCCCchhHHHHHhhc
Q 017671 107 ISSGVRDTVRYLVQHHMVDVVVTTAGGIEEDLVKCLA 143 (368)
Q Consensus 107 vssGlr~~i~~Li~~~~VD~IVtTgg~lehDi~~~l~ 143 (368)
++..|.++.+.++++..+..|+.|||-.--.+++.|+
T Consensus 179 i~~~la~l~~~l~~~~~~~~li~tGGDTa~av~~~Lg 215 (223)
T PF07005_consen 179 IADALAELAARLLERVGISGLILTGGDTASAVLKALG 215 (223)
T ss_dssp HHHHHHHHHHHHHHC-TEEEEEEESHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEeCChHHHHHHHHhC
Confidence 8999999999999998899999999998888888876
No 86
>cd00886 MogA_MoaB MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers.
Probab=23.38 E-value=72 Score=28.11 Aligned_cols=23 Identities=26% Similarity=0.453 Sum_probs=17.4
Q ss_pred hHHHHHHHHhcCceeEEEeCCCc
Q 017671 111 VRDTVRYLVQHHMVDVVVTTAGG 133 (368)
Q Consensus 111 lr~~i~~Li~~~~VD~IVtTgg~ 133 (368)
+++.|+.+.++--.|.||||||.
T Consensus 49 i~~~l~~~~~~~~~DlVittGG~ 71 (152)
T cd00886 49 IREALIEWADEDGVDLILTTGGT 71 (152)
T ss_pred HHHHHHHHHhcCCCCEEEECCCc
Confidence 56667777764359999999994
No 87
>PRK00951 hisB imidazoleglycerol-phosphate dehydratase; Validated
Probab=23.15 E-value=1.1e+02 Score=28.95 Aligned_cols=60 Identities=30% Similarity=0.521 Sum_probs=43.8
Q ss_pred ccchhhhH---HHHHHHHhcCceeEEEeCCCchh-------HHHHHhhcCccccCCCCCchhH-HhCCCcceeeeeec
Q 017671 105 NLISSGVR---DTVRYLVQHHMVDVVVTTAGGIE-------EDLVKCLAPTFKGDFALPGAYL-RSKGLNRIGNLLVP 171 (368)
Q Consensus 105 nmvssGlr---~~i~~Li~~~~VD~IVtTgg~le-------hDi~~~l~~~y~G~~~~dd~~L-r~~ginRigdv~ip 171 (368)
+-|+||+. ..+..|.+|+.+|.-|..=|-++ ||+.=+||.-+. ..| -+.||+|.|+-++|
T Consensus 28 ~~i~TGi~FlDHML~~~a~H~~~dL~v~a~GDl~vD~HHtvEDvgI~LG~al~-------~aLgdk~GI~Ryg~a~~P 98 (195)
T PRK00951 28 SDIDTGVGFLDHMLDQFARHGLFDLTVKAKGDLHIDDHHTVEDVGIVLGQALK-------EALGDKKGIRRYGHAYVP 98 (195)
T ss_pred cceeCCccHHHHHHHHHHHHcCCCeEEEEecCccccCCchHHHHHHHHHHHHH-------HHhcCccccceeEeeeec
Confidence 45889976 58999999999999999877654 455555553221 111 13899999999999
No 88
>TIGR01001 metA homoserine O-succinyltransferase. The apparent equivalog from Bacillus subtilis is broken into two tandem reading frames.
Probab=22.94 E-value=55 Score=32.97 Aligned_cols=34 Identities=15% Similarity=0.137 Sum_probs=28.7
Q ss_pred ccccchhhhHHHHHHH--HhcCceeEEEeCCCchhH
Q 017671 103 TSNLISSGVRDTVRYL--VQHHMVDVVVTTAGGIEE 136 (368)
Q Consensus 103 tgnmvssGlr~~i~~L--i~~~~VD~IVtTgg~leh 136 (368)
+.|..+.=|...-..+ |++...|++|.|||.||+
T Consensus 77 ~k~t~~~hl~~fY~~f~~ik~~~fDGlIITGAPvE~ 112 (300)
T TIGR01001 77 SKNTPIEHLNKFYTTFEAVKDRKFDGLIITGAPVEL 112 (300)
T ss_pred CCCCCHHHHHHHhhCHHHHhcCCCCEEEEcCCCcCC
Confidence 3466677788888888 999999999999998875
No 89
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=22.65 E-value=1.3e+02 Score=32.00 Aligned_cols=47 Identities=9% Similarity=0.064 Sum_probs=35.2
Q ss_pred cceEEEccccccchhhhHHHHHHHHhcCceeEEEeCCCchhHHHHHh
Q 017671 95 RCKVFLGFTSNLISSGVRDTVRYLVQHHMVDVVVTTAGGIEEDLVKC 141 (368)
Q Consensus 95 ~~tIfL~~tgnmvssGlr~~i~~Li~~~~VD~IVtTgg~lehDi~~~ 141 (368)
+..+++.-+|+..-+|+.......--.|.-=++|.||||++-|.++-
T Consensus 267 ~~gii~EpagA~~lAal~~~~~~~~~~~~~vv~i~sG~n~~~~~l~~ 313 (499)
T TIGR01124 267 DTRAVAEPAGALALAGLKKYVALHGIRGQTLVAILSGANMNFHRLRY 313 (499)
T ss_pred hcCcEEechHHHHHHHHHHhhhhcCCCCCeEEEEECCCCCCHHHHHH
Confidence 47789999999999999886654311244448899999999887774
No 90
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=22.36 E-value=90 Score=26.54 Aligned_cols=37 Identities=24% Similarity=0.392 Sum_probs=31.4
Q ss_pred eEEEccccccchhhhHHHHHHHHhcC-ceeEEEeCCCc
Q 017671 97 KVFLGFTSNLISSGVRDTVRYLVQHH-MVDVVVTTAGG 133 (368)
Q Consensus 97 tIfL~~tgnmvssGlr~~i~~Li~~~-~VD~IVtTgg~ 133 (368)
+|.|++||+.-.-..-++++.|.+.| -|++|+|-.|-
T Consensus 2 ~i~l~vtGs~~~~~~~~~l~~L~~~g~~v~vv~S~~A~ 39 (129)
T PF02441_consen 2 RILLGVTGSIAAYKAPDLLRRLKRAGWEVRVVLSPSAE 39 (129)
T ss_dssp EEEEEE-SSGGGGGHHHHHHHHHTTTSEEEEEESHHHH
T ss_pred EEEEEEECHHHHHHHHHHHHHHhhCCCEEEEEECCcHH
Confidence 68999999988888889999999996 68999988773
No 91
>TIGR00177 molyb_syn molybdenum cofactor synthesis domain. The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.
Probab=22.16 E-value=73 Score=27.78 Aligned_cols=22 Identities=41% Similarity=0.592 Sum_probs=16.7
Q ss_pred hhHHHHHHHHhcCceeEEEeCCCc
Q 017671 110 GVRDTVRYLVQHHMVDVVVTTAGG 133 (368)
Q Consensus 110 Glr~~i~~Li~~~~VD~IVtTgg~ 133 (368)
-+.+.|+.+.+ -.|.||||||.
T Consensus 55 ~i~~~l~~~~~--~~DliIttGG~ 76 (144)
T TIGR00177 55 EIREILRKAVD--EADVVLTTGGT 76 (144)
T ss_pred HHHHHHHHHHh--CCCEEEECCCC
Confidence 45666777666 49999999984
No 92
>cd08177 MAR Maleylacetate reductase is involved in many aromatic compounds degradation pathways of aerobic microbes. Maleylacetate reductases (MAR) play an important role in the degradation of aromatic compounds in aerobic microbes. In fungi and yeasts, the enzymes are involved in the catabolism of compounds such as phenol, tyrosine, benzoate, 4-hydroxybenzoate and resorcinol. In bacteria, the enzymes contribute to the degradation of resorcinol, 2,4-dihydroxybenzoate ([beta]-resorcylate) and 2,6-dihydroxybenzoate ([gamma]-resorcylate) via hydroxyquinol and maleylacetate. Maleylacetate reductases catalyze NADH- or NADPH-dependent reduction, at the carbon-carbon double bond, of maleylacetate or 2-chloromaleylacetate to 3-oxoadipate. In the case of 2-chloromaleylacetate, Maleylacetate reductases initially catalyses the NAD(P)H-dependent dechlorination to maleylacetate, which is then reduced to 3-oxoadipate. This enzyme is a homodimer. It is inhibited by thiol-blocking reagents such as p-
Probab=21.99 E-value=4.4e+02 Score=26.16 Aligned_cols=47 Identities=23% Similarity=0.231 Sum_probs=35.0
Q ss_pred ceEEEccccccchhhhHHHHHHHHhcCceeEEEeCCCchhHHHHHhhc
Q 017671 96 CKVFLGFTSNLISSGVRDTVRYLVQHHMVDVVVTTAGGIEEDLVKCLA 143 (368)
Q Consensus 96 ~tIfL~~tgnmvssGlr~~i~~Li~~~~VD~IVtTgg~lehDi~~~l~ 143 (368)
..+|-.+..|=...-+.+++.. ++..-+|+||.=|||--.|+.|+++
T Consensus 51 ~~~~~~~~~~p~~~~v~~~~~~-~~~~~~d~IIaiGGGs~iD~aK~ia 97 (337)
T cd08177 51 AGTFDGAVMHTPVEVTEAAVAA-AREAGADGIVAIGGGSTIDLAKAIA 97 (337)
T ss_pred cEEeCCCCCCCCHHHHHHHHHH-HHhcCCCEEEEeCCcHHHHHHHHHH
Confidence 4567667776655555555544 4445699999999999999999884
No 93
>COG0131 HisB Imidazoleglycerol-phosphate dehydratase [Amino acid transport and metabolism]
Probab=21.98 E-value=92 Score=29.57 Aligned_cols=64 Identities=31% Similarity=0.492 Sum_probs=46.3
Q ss_pred cccc-chhhhH---HHHHHHHhcCceeEEEeCCCchh-------HHHHHhhcCccccCCCCCchhH-HhCCCcceeeeee
Q 017671 103 TSNL-ISSGVR---DTVRYLVQHHMVDVVVTTAGGIE-------EDLVKCLAPTFKGDFALPGAYL-RSKGLNRIGNLLV 170 (368)
Q Consensus 103 tgnm-vssGlr---~~i~~Li~~~~VD~IVtTgg~le-------hDi~~~l~~~y~G~~~~dd~~L-r~~ginRigdv~i 170 (368)
+|.. +.||+. ..+..|.+|+.+|..|.+-|-++ ||+.=+||.-.. ..| -++||.|+|.-++
T Consensus 26 ~G~~~i~TGv~FfDHML~~~a~H~~~dl~V~a~GDl~iDdHHtvED~gIaLGqAl~-------~AlGdk~GI~Rfg~~~v 98 (195)
T COG0131 26 TGKSKIDTGVGFFDHMLDQLARHGGFDLEVSAKGDLHIDDHHTVEDTGIALGQALK-------EALGDKRGIRRFGSAYV 98 (195)
T ss_pred CCceeecCCCchHHHHHHHHHHhCCCceEEEEccCccccccchHHHHHHHHHHHHH-------HHhcccccceecccccc
Confidence 4444 889976 59999999999999999999754 555555553221 011 2589999999999
Q ss_pred cCc
Q 017671 171 PND 173 (368)
Q Consensus 171 p~e 173 (368)
|-+
T Consensus 99 PMD 101 (195)
T COG0131 99 PMD 101 (195)
T ss_pred cch
Confidence 933
No 94
>PRK09529 bifunctional acetyl-CoA decarbonylase/synthase complex subunit alpha/beta; Reviewed
Probab=21.66 E-value=1.3e+02 Score=33.71 Aligned_cols=119 Identities=12% Similarity=0.238 Sum_probs=69.0
Q ss_pred ccceEEEccccccchhhhHHHHHHHHhcCceeEEEe---------------------CCCchhHHHHHhhcCccccCCCC
Q 017671 94 VRCKVFLGFTSNLISSGVRDTVRYLVQHHMVDVVVT---------------------TAGGIEEDLVKCLAPTFKGDFAL 152 (368)
Q Consensus 94 ~~~tIfL~~tgnmvssGlr~~i~~Li~~~~VD~IVt---------------------Tgg~lehDi~~~l~~~y~G~~~~ 152 (368)
.+++..=-+.-.|+||||=|+|.+++=+ +|.+.. |||+..-.=+-..+.+|..+..
T Consensus 563 ~~v~lys~~~~P~TsCGCfE~i~~~~Pe--~nG~~iv~R~~~g~TP~Gm~FstlAg~~gGG~Q~pGF~G~~~~y~~S~K- 639 (711)
T PRK09529 563 ERVNLYSIMEDPMTSCGCFEAIAAILPE--CNGFMVVNREYSGMTPCGMTFSTLAGTIGGGVQTPGFMGISKSYITSRK- 639 (711)
T ss_pred EEEEEEEeccCCCcccchHHhHhhhccc--CceEEEEecCcCCCCCCCCchHHHhhccCCCccCCCceeeehhhccCcc-
Confidence 3467777788999999999999999876 555542 4444443333333445544432
Q ss_pred CchhH-HhCCCcceeeeeecCccHHHHHHHHHHHHHHHHHhhcccCcccCHHHHHHHhccccC--CCchHHHHHHHCCCc
Q 017671 153 PGAYL-RSKGLNRIGNLLVPNDNYCKFEDWIIPIFDQMLKEQNEEEISWTPSKVIARLGKEIN--DESSYLYWAYKNNIP 229 (368)
Q Consensus 153 dd~~L-r~~ginRigdv~ip~e~y~~~E~~i~~il~~l~~~q~~~~~~~t~~e~~~~lG~~i~--~e~Sil~~A~k~~VP 229 (368)
-| -+-|++|| |..|.+-. +++.+.+.+-.++ ...-+|..+++-+-+ +.+.++..-.+++=|
T Consensus 640 ---F~~adGG~~Ri--VWmPk~lK----e~v~~~i~~~~~e-------~g~~~~~dkIa~E~~~~~~eel~~fL~~~~HP 703 (711)
T PRK09529 640 ---FIQADGGIARL--VWMPKELK----EELKDRLNARAKE-------EGLPDFYDKIADETVGTTEEEILPFLEEKGHP 703 (711)
T ss_pred ---ceecCCCeeeE--EECCHHHH----HHHHHHhhhhhhh-------ccchHHHHhhcCccccCCHHHHHHHHHhcCCc
Confidence 22 23679998 66775543 3444444322111 122466666664322 356666666666666
Q ss_pred ee
Q 017671 230 VF 231 (368)
Q Consensus 230 Vf 231 (368)
+.
T Consensus 704 ~l 705 (711)
T PRK09529 704 AL 705 (711)
T ss_pred cc
Confidence 54
No 95
>PF13378 MR_MLE_C: Enolase C-terminal domain-like; PDB: 3FCP_B 3P0W_D 3VFC_A 3VDG_A 3FJ4_B 3CT2_B 3DGB_A 3V3W_A 3V4B_A 3NO1_E ....
Probab=21.63 E-value=1.2e+02 Score=24.80 Aligned_cols=31 Identities=19% Similarity=0.221 Sum_probs=25.7
Q ss_pred chHHHHHHHCCCceecCCCCchhHHHHHHHhH
Q 017671 217 SSYLYWAYKNNIPVFCPGLTDGSLGDMLYFHS 248 (368)
Q Consensus 217 ~Sil~~A~k~~VPVf~Pa~tDgsiG~~l~~~~ 248 (368)
.-|...|.++|+|+.+=+. +|.+|.....|-
T Consensus 36 ~~i~~~A~~~gi~~~~h~~-~~~i~~aa~~hl 66 (111)
T PF13378_consen 36 LRIAALAEAHGIPVMPHSM-ESGIGLAASLHL 66 (111)
T ss_dssp HHHHHHHHHTT-EEEEBSS-SSHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCEEecCC-CCcHHHHHHHHH
Confidence 4577889999999998888 999999877774
No 96
>cd03409 Chelatase_Class_II Class II Chelatase: a family of ATP-independent monomeric or homodimeric enzymes that catalyze the insertion of metal into protoporphyrin rings. This family includes protoporphyrin IX ferrochelatase (HemH), sirohydrochlorin ferrochelatase (SirB) and the cobaltochelatases, CbiK and CbiX. HemH and SirB are involved in heme and siroheme biosynthesis, respectively, while the cobaltochelatases are associated with cobalamin biosynthesis. Excluded from this family are the ATP-dependent heterotrimeric chelatases (class I) and the multifunctional homodimeric enzymes with dehydrogenase and chelatase activities (class III).
Probab=21.56 E-value=3e+02 Score=21.61 Aligned_cols=69 Identities=20% Similarity=0.295 Sum_probs=46.3
Q ss_pred cHHHHHHHHHHHHhccccCCCCCcccccccCCccccccccceEEEccccccchhhhHHHHHHHHhcCceeEEE-----eC
Q 017671 56 NFGDAIEVVNQMLDWRLADEVIPEDCDERERDPEYRKSVRCKVFLGFTSNLISSGVRDTVRYLVQHHMVDVVV-----TT 130 (368)
Q Consensus 56 ~l~~A~~i~~~M~~~~~~d~~~~~~~~~~~~~~~~~~~~~~tIfL~~tgnmvssGlr~~i~~Li~~~~VD~IV-----tT 130 (368)
...+.++-+.++++.++++ ..++++|.... .--+.+.+..|.++|.=+++| ..
T Consensus 14 ~~~~~~~~~~~~l~~~~~~---------------------~~v~~a~~~~~-~P~i~~~l~~l~~~g~~~vvvvPl~~~~ 71 (101)
T cd03409 14 PYKKDIEAQAHNLAESLPD---------------------FPYYVGFQSGL-GPDTEEAIRELAEEGYQRVVIVPLAPVS 71 (101)
T ss_pred cHHHHHHHHHHHHHHHCCC---------------------CCEEEEEECCC-CCCHHHHHHHHHHcCCCeEEEEeCcccc
Confidence 4556666667777644322 34677777653 445889999999998766665 46
Q ss_pred CCchhHHHHHhhcCcc
Q 017671 131 AGGIEEDLVKCLAPTF 146 (368)
Q Consensus 131 gg~lehDi~~~l~~~y 146 (368)
|....+|+.+-++.+.
T Consensus 72 g~h~~~di~~~~~~~~ 87 (101)
T cd03409 72 GDEVFYDIDSEIGLVR 87 (101)
T ss_pred ChhhHHHHHHHHHHHH
Confidence 7778888888776433
No 97
>PRK15321 putative type III secretion system effector protein OrgC; Provisional
Probab=20.90 E-value=38 Score=29.07 Aligned_cols=12 Identities=42% Similarity=0.808 Sum_probs=8.0
Q ss_pred CCCCCccchhhc
Q 017671 317 DSGARPDEAVSW 328 (368)
Q Consensus 317 lSGA~p~EAiSW 328 (368)
|||-+++|+++|
T Consensus 109 LS~G~~~E~~~W 120 (120)
T PRK15321 109 LSGGENKEAIDW 120 (120)
T ss_pred hcCCCccccccC
Confidence 566666777666
No 98
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=20.50 E-value=1.8e+02 Score=27.41 Aligned_cols=76 Identities=8% Similarity=0.104 Sum_probs=51.9
Q ss_pred HHHHHhhc-CcccccHHH---HHHHHHHHHhccccCCCCCcccccccCCccccccccceEEEccccccchhhhHHHHHHH
Q 017671 43 LLKSMVST-GFQASNFGD---AIEVVNQMLDWRLADEVIPEDCDERERDPEYRKSVRCKVFLGFTSNLISSGVRDTVRYL 118 (368)
Q Consensus 43 L~~~~~~~-GFqA~~l~~---A~~i~~~M~~~~~~d~~~~~~~~~~~~~~~~~~~~~~tIfL~~tgnmvssGlr~~i~~L 118 (368)
++..|-+. ||+-..||. .-++++...+++. --|.||++..-....+++++..|
T Consensus 107 iv~~~l~~~G~~Vi~LG~~vp~e~~v~~~~~~~~-----------------------~~V~lS~~~~~~~~~~~~~i~~L 163 (213)
T cd02069 107 LVGVILSNNGYEVIDLGVMVPIEKILEAAKEHKA-----------------------DIIGLSGLLVPSLDEMVEVAEEM 163 (213)
T ss_pred HHHHHHHhCCCEEEECCCCCCHHHHHHHHHHcCC-----------------------CEEEEccchhccHHHHHHHHHHH
Confidence 44444444 999999996 4455555555221 23456665555666788999999
Q ss_pred HhcCceeEEEeCCCc-hhHHHHHhh
Q 017671 119 VQHHMVDVVVTTAGG-IEEDLVKCL 142 (368)
Q Consensus 119 i~~~~VD~IVtTgg~-lehDi~~~l 142 (368)
-+.+. ++-|-=||+ +.+++.+..
T Consensus 164 ~~~~~-~~~i~vGG~~~~~~~~~~~ 187 (213)
T cd02069 164 NRRGI-KIPLLIGGAATSRKHTAVK 187 (213)
T ss_pred HhcCC-CCeEEEEChhcCHHHHhhh
Confidence 98877 777777775 888888753
No 99
>TIGR00316 cdhC CO dehydrogenase/CO-methylating acetyl-CoA synthase complex, beta subunit. Nomenclature follows the description for Methanosarcina thermophila. The CO-methylating acetyl-CoA synthase is considered the defining enzyme of the Wood-Ljungdahl pathway, used for acetate catabolism by sulfate reducing bacteria but for acetate biosynthesis by acetogenic bacteria such as oorella thermoacetica (f. Clostridium thermoaceticum).
Probab=20.35 E-value=91 Score=33.09 Aligned_cols=90 Identities=18% Similarity=0.283 Sum_probs=54.8
Q ss_pred ccceEEEccccccchhhhHHHHHHHHhcCceeEEEe---------------------CCCchhHHHHHhhcCccccCCCC
Q 017671 94 VRCKVFLGFTSNLISSGVRDTVRYLVQHHMVDVVVT---------------------TAGGIEEDLVKCLAPTFKGDFAL 152 (368)
Q Consensus 94 ~~~tIfL~~tgnmvssGlr~~i~~Li~~~~VD~IVt---------------------Tgg~lehDi~~~l~~~y~G~~~~ 152 (368)
.+++..=.+.-.|+||||=++|.+.+=. +|.|.. |||+..-.=+-.++.+|..+..
T Consensus 262 e~v~lys~~~~P~TsCGCfE~i~~~iPe--~~G~~iv~R~y~g~TP~Gm~FstlAg~~gGG~Q~pGF~Gi~~~y~~S~K- 338 (458)
T TIGR00316 262 ERVKLHSAFEYPHTSCGCFEAIVFYIPE--VDGIGIVHRGYRGETPNGLPFSTMAGQCSGGKQVPGFVGISISYMRSPK- 338 (458)
T ss_pred EEEEEEEeccCCCcccchHhhheeeeec--CceeEEEecCcCCCCCCCCchHHhhhccCCcccCCCceeeehhhccCcc-
Confidence 3467677788999999999999998866 555542 3444433333333445544432
Q ss_pred CchhH-HhCCCcceeeeeecCccHHHHHHHH-HHHHHHHHH
Q 017671 153 PGAYL-RSKGLNRIGNLLVPNDNYCKFEDWI-IPIFDQMLK 191 (368)
Q Consensus 153 dd~~L-r~~ginRigdv~ip~e~y~~~E~~i-~~il~~l~~ 191 (368)
-| .+-|++|| |..|.+-...+-+.+ .++++++..
T Consensus 339 ---Fl~adGG~~Ri--VWmPk~lKe~v~~~i~~~~~dkIa~ 374 (458)
T TIGR00316 339 ---FLQADGGWERV--VWMPKELKERVKDAIPEDLRDKIAT 374 (458)
T ss_pred ---ceecCCCeeeE--EECCHHHHHHHHHhcCHHHHhhhcC
Confidence 22 23679998 667866655554444 335555543
Done!