Query 017672
Match_columns 368
No_of_seqs 171 out of 2026
Neff 9.3
Searched_HMMs 29240
Date Mon Mar 25 03:06:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017672.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017672hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i68_A Protein EMRE; transmemb 99.1 7.4E-11 2.5E-15 93.7 5.5 71 264-334 34-105 (137)
2 3b5d_A Multidrug transporter E 98.6 3.1E-07 1.1E-11 70.2 10.4 69 84-158 34-103 (110)
3 3b5d_A Multidrug transporter E 98.6 1.1E-07 3.6E-12 72.8 7.2 70 264-333 34-104 (110)
4 2i68_A Protein EMRE; transmemb 98.6 9.6E-08 3.3E-12 75.7 6.9 69 84-158 34-103 (137)
5 2jo1_A Phospholemman; FXYD1, N 53.7 3.5 0.00012 27.5 0.5 20 317-336 22-41 (72)
6 3rko_J NADH-quinone oxidoreduc 50.3 1E+02 0.0034 25.0 13.9 32 301-332 127-160 (184)
7 3l1l_A Arginine/agmatine antip 43.4 55 0.0019 30.1 7.3 42 295-337 389-431 (445)
8 1pw4_A Glycerol-3-phosphate tr 33.8 2.6E+02 0.0088 25.0 24.1 38 19-57 94-132 (451)
9 4aps_A DI-OR tripeptide H+ sym 28.3 3.4E+02 0.012 24.6 12.3 20 201-220 63-83 (491)
10 4aps_A DI-OR tripeptide H+ sym 23.2 4.2E+02 0.014 24.0 19.3 17 24-40 156-172 (491)
11 2xq2_A Sodium/glucose cotransp 23.2 5.1E+02 0.017 24.9 13.1 30 299-328 533-562 (593)
No 1
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=99.10 E-value=7.4e-11 Score=93.70 Aligned_cols=71 Identities=8% Similarity=0.192 Sum_probs=54.4
Q ss_pred HHHHHhhhHHHHHHHHHHhccCcceeeec-chhHHHHHHHHHHHHhcccccchhHhHHHHHHHHHHHhhccc
Q 017672 264 YCGLVINGITYWIQVWAIEKKGPVFIAIF-TPFALIITAIFSAFLWKETLHWGSVGGAVLLVGGLYSVLWGK 334 (368)
Q Consensus 264 ~~gi~~~~i~~~l~~~a~~~~~a~~~~~~-~~~~pv~~~i~~~~~~~e~~~~~~~~G~~lii~gi~~~~~~~ 334 (368)
.+++++++++++++.+++++.+++++..+ ..+.|+++.+++++++||++++.+++|+++|++|+++....+
T Consensus 34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 45667888999999999999999999998 899999999999999999999999999999999999987644
No 2
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.61 E-value=3.1e-07 Score=70.20 Aligned_cols=69 Identities=13% Similarity=0.185 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHHHHHhccccChhhhhhc-ccchhHHHHHHHHHHhcccccccccccccchhhHHHhHHhHHHHhh
Q 017672 84 LVSLFGLTLSLNLYYVAINYTTATFAAAT-TNTIPAITFVLAGLLRIESISIKYLHGIAKVLGSVVSVSGALVFAF 158 (368)
Q Consensus 84 ~~g~~~~~~~~~~~~~al~~~~~~~~~~i-~~~~p~~~~ll~~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~~ 158 (368)
+.++++...++.++..++++.|.+.+..+ ..+.|+++.+++++++||+++.. +++|+.++++|++++..
T Consensus 34 ~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~------~~~Gi~lIi~Gv~~l~~ 103 (110)
T 3b5d_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLP------AIIGMMLICAGVLIINL 103 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHhc
Confidence 45666677888899999999999999988 79999999999999999999999 99999999999999865
No 3
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.59 E-value=1.1e-07 Score=72.82 Aligned_cols=70 Identities=9% Similarity=0.195 Sum_probs=63.8
Q ss_pred HHHHHhhhHHHHHHHHHHhccCcceeeec-chhHHHHHHHHHHHHhcccccchhHhHHHHHHHHHHHhhcc
Q 017672 264 YCGLVINGITYWIQVWAIEKKGPVFIAIF-TPFALIITAIFSAFLWKETLHWGSVGGAVLLVGGLYSVLWG 333 (368)
Q Consensus 264 ~~gi~~~~i~~~l~~~a~~~~~a~~~~~~-~~~~pv~~~i~~~~~~~e~~~~~~~~G~~lii~gi~~~~~~ 333 (368)
..++++.++++.++.+++|+.+.+.+..+ ..+.|+++.+++++++||++++.+++|.++|+.|+++....
T Consensus 34 ~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~ 104 (110)
T 3b5d_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL 104 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 35566778999999999999999999888 89999999999999999999999999999999999987653
No 4
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.58 E-value=9.6e-08 Score=75.73 Aligned_cols=69 Identities=13% Similarity=0.185 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHHHHhccccChhhhhhc-ccchhHHHHHHHHHHhcccccccccccccchhhHHHhHHhHHHHhh
Q 017672 84 LVSLFGLTLSLNLYYVAINYTTATFAAAT-TNTIPAITFVLAGLLRIESISIKYLHGIAKVLGSVVSVSGALVFAF 158 (368)
Q Consensus 84 ~~g~~~~~~~~~~~~~al~~~~~~~~~~i-~~~~p~~~~ll~~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~~ 158 (368)
+++++...+++.++..++++.|++.+..+ .++.|+++.++++++++|++++. +++|+.++++|++++..
T Consensus 34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~------~~~Gi~LIi~GV~ll~~ 103 (137)
T 2i68_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLP------AIIGMMLICAGVLIINL 103 (137)
T ss_dssp CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHhc
Confidence 46667778889999999999999999998 89999999999999999999999 99999999999999975
No 5
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=53.73 E-value=3.5 Score=27.50 Aligned_cols=20 Identities=30% Similarity=0.401 Sum_probs=11.3
Q ss_pred HhHHHHHHHHHHHhhccccc
Q 017672 317 VGGAVLLVGGLYSVLWGKNR 336 (368)
Q Consensus 317 ~~G~~lii~gi~~~~~~~~~ 336 (368)
++++++.++|+++...+|-+
T Consensus 22 ifA~vLfi~GI~iilS~Kck 41 (72)
T 2jo1_A 22 VIAGILFILGILIVLSRRCR 41 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCccc
Confidence 34555666676666654443
No 6
>3rko_J NADH-quinone oxidoreductase subunit J; complex I, proton pump, membrane protein, Na ubiquinone, cytoplasmic membrane; HET: LFA CA7; 3.00A {Escherichia coli}
Probab=50.34 E-value=1e+02 Score=25.01 Aligned_cols=32 Identities=13% Similarity=0.003 Sum_probs=23.8
Q ss_pred HHHHHHHhcccccchhHhHHHHHH--HHHHHhhc
Q 017672 301 AIFSAFLWKETLHWGSVGGAVLLV--GGLYSVLW 332 (368)
Q Consensus 301 ~i~~~~~~~e~~~~~~~~G~~lii--~gi~~~~~ 332 (368)
--+|..++++..-+.+..+..+.+ +|.+...+
T Consensus 127 ~~iG~~Lft~Y~lpFElaSvlLLvAmIGAIvLar 160 (184)
T 3rko_J 127 KAVGITLFGPYVLAVELASMLLLAGLVVAFHVGR 160 (184)
T ss_dssp HHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 467888899999999999988876 34444443
No 7
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=43.39 E-value=55 Score=30.08 Aligned_cols=42 Identities=12% Similarity=-0.089 Sum_probs=22.4
Q ss_pred hHHHHHHHHHHHH-hcccccchhHhHHHHHHHHHHHhhcccccc
Q 017672 295 FALIITAIFSAFL-WKETLHWGSVGGAVLLVGGLYSVLWGKNRE 337 (368)
Q Consensus 295 ~~pv~~~i~~~~~-~~e~~~~~~~~G~~lii~gi~~~~~~~~~~ 337 (368)
.-++++.++..+. +...+ ...+.|.++++.|+.++.+.++++
T Consensus 389 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~y~~~~~~~ 431 (445)
T 3l1l_A 389 AVTTIAFLYCIWAVVGSGA-KEVMWSFVTLMVITAMYALNYNRL 431 (445)
T ss_dssp HHHHHHHHHHHHHHHHSCH-HHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHHHHcCH-HHHHHHHHHHHHHHHHHHHHhhhc
Confidence 3344444444333 33222 234567888888877776554443
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=33.82 E-value=2.6e+02 Score=24.97 Aligned_cols=38 Identities=13% Similarity=-0.104 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHh-cCCChHHHHHHHHHHHHH
Q 017672 19 AMIFVQFAYAGMALFSKAAIA-KGMNPFVFVVYRQAFASL 57 (368)
Q Consensus 19 ~~~l~~~~~~~~~~~~k~~~~-~g~~~~~~~~~r~~~~~l 57 (368)
.++++.++++...+..-.... . -+...+...|.+.+..
T Consensus 94 ~l~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~l~G~~ 132 (451)
T 1pw4_A 94 FLPAGLILAAAVMLFMGFVPWAT-SSIAVMFVLLFLCGWF 132 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHHH-SSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhcc-ccHHHHHHHHHHHHHH
Confidence 344445555555544433110 1 2344566667766543
No 9
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=28.28 E-value=3.4e+02 Score=24.64 Aligned_cols=20 Identities=10% Similarity=0.095 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHhhhh-CC
Q 017672 201 ANTAWSLWLVLQGYIIKQ-YP 220 (368)
Q Consensus 201 a~~~~a~~~~~~~~~~~~-~~ 220 (368)
..+...+......++.++ .+
T Consensus 63 ~~~~~~~~~~~~g~l~dr~~g 83 (491)
T 4aps_A 63 YASMVYLSGTIGGFVADRIIG 83 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHHhcccc
Confidence 344555555555565565 44
No 10
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=23.24 E-value=4.2e+02 Score=23.98 Aligned_cols=17 Identities=18% Similarity=-0.013 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHhc
Q 017672 24 QFAYAGMALFSKAAIAK 40 (368)
Q Consensus 24 ~~~~~~~~~~~k~~~~~ 40 (368)
.+.....+.+.....+.
T Consensus 156 ~~g~~~~~~~~~~l~~~ 172 (491)
T 4aps_A 156 NLGAFIAPLIVGAAQEA 172 (491)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 34444555556655554
No 11
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A
Probab=23.18 E-value=5.1e+02 Score=24.90 Aligned_cols=30 Identities=10% Similarity=-0.120 Sum_probs=20.2
Q ss_pred HHHHHHHHHhcccccchhHhHHHHHHHHHH
Q 017672 299 ITAIFSAFLWKETLHWGSVGGAVLLVGGLY 328 (368)
Q Consensus 299 ~~~i~~~~~~~e~~~~~~~~G~~lii~gi~ 328 (368)
..++.-+++|.+.....-.+++.+++.|++
T Consensus 533 ~~~~~~~~~f~~~~~~~i~l~v~~~~~~~~ 562 (593)
T 2xq2_A 533 IVLAVLYTLFWVNADAEITLIIFGVMAGVI 562 (593)
T ss_dssp HHHHHHHHHHHHCTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 344444555677777777788888887765
Done!