Query 017672
Match_columns 368
No_of_seqs 171 out of 2026
Neff 9.3
Searched_HMMs 13730
Date Mon Mar 25 03:07:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017672.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/017672hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1iwga8 f.35.1.1 (A:513-566,A: 33.7 95 0.0069 23.7 8.9 28 299-326 96-123 (222)
2 d2e74g1 f.23.26.1 (G:9-35) Pet 31.0 27 0.002 16.7 2.9 18 192-209 2-19 (27)
3 d1pw4a_ f.38.1.1 (A:) Glycerol 20.8 2E+02 0.015 23.2 27.1 25 264-288 352-376 (447)
4 d1q90r_ f.23.12.1 (R:) ISP sub 10.6 1.3E+02 0.0096 16.1 3.7 34 71-104 4-37 (39)
5 d2axtt1 f.23.34.1 (T:1-30) Pho 9.5 1.2E+02 0.0084 14.6 2.4 17 297-313 12-28 (30)
6 d1fftb2 f.17.2.1 (B:27-117) Cy 8.7 60 0.0044 21.1 1.3 19 321-339 29-47 (91)
7 d1iwga7 f.35.1.1 (A:7-37,A:331 5.5 1.3E+02 0.0098 22.3 2.1 27 300-326 79-105 (199)
8 d1gl4a1 d.22.1.2 (A:399-631) D 3.6 1.5E+02 0.011 23.0 0.9 36 99-135 43-78 (233)
9 d1kqfb2 f.23.22.1 (B:246-290) 3.0 4.3E+02 0.031 14.4 2.3 25 307-331 7-31 (45)
10 d1xioa_ f.13.1.1 (A:) Sensory 2.3 1.1E+03 0.079 17.0 16.9 173 42-243 1-179 (226)
No 1
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=33.71 E-value=95 Score=23.71 Aligned_cols=28 Identities=21% Similarity=0.044 Sum_probs=20.4
Q ss_pred HHHHHHHHHhcccccchhHhHHHHHHHH
Q 017672 299 ITAIFSAFLWKETLHWGSVGGAVLLVGG 326 (368)
Q Consensus 299 ~~~i~~~~~~~e~~~~~~~~G~~lii~g 326 (368)
.+.+.+..+.+.+++.....|.++.++-
T Consensus 96 ~~~~~~l~~~g~~~~~~~~~g~i~l~Gi 123 (222)
T d1iwga8 96 IGALLAATFRGLTNDVYFQVGLLTTIGL 123 (222)
T ss_dssp HHHHHHHHHTTCCBCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCchhhhhcccccchhhh
Confidence 4455566678899998888888776654
No 2
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=30.99 E-value=27 Score=16.67 Aligned_cols=18 Identities=6% Similarity=0.180 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 017672 192 IKGALIMISANTAWSLWL 209 (368)
Q Consensus 192 ~~G~~~~l~a~~~~a~~~ 209 (368)
.+|.+++-+++++||.|.
T Consensus 2 vlgli~~tl~glf~aayq 19 (27)
T d2e74g1 2 VLGLVFATLGGLFYAAYQ 19 (27)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred eeeehHHHHHHHHHHHHH
Confidence 468888889999998874
No 3
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=20.78 E-value=2e+02 Score=23.19 Aligned_cols=25 Identities=24% Similarity=0.242 Sum_probs=11.0
Q ss_pred HHHHHhhhHHHHHHHHHHhccCcce
Q 017672 264 YCGLVINGITYWIQVWAIEKKGPVF 288 (368)
Q Consensus 264 ~~gi~~~~i~~~l~~~a~~~~~a~~ 288 (368)
..|...............+..+...
T Consensus 352 ~~g~~~~~~~~~~~~~~~~~~p~~~ 376 (447)
T d1pw4a_ 352 VIGFLIYGPVMLIGLHALELAPKKA 376 (447)
T ss_dssp HHHHHHTHHHHHHHHHHHHTSCTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCHHH
Confidence 3343333333444445555555443
No 4
>d1q90r_ f.23.12.1 (R:) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=10.60 E-value=1.3e+02 Score=16.06 Aligned_cols=34 Identities=9% Similarity=0.127 Sum_probs=20.4
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 017672 71 ASPLSYSSVCKIFLVSLFGLTLSLNLYYVAINYT 104 (368)
Q Consensus 71 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~ 104 (368)
.++..+|+..-++.+|..+......++=++..++
T Consensus 4 VpDMgrR~~MNLll~G~~~~~~~g~l~py~~fFv 37 (39)
T d1q90r_ 4 VPDMNKRNIMNLILAGGAGLPITTLALGYGAFFV 37 (39)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred ccchhHHHHHHHHHHhccchhhhhhccceeEEec
Confidence 3455577777788888766555554554444333
No 5
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=9.46 E-value=1.2e+02 Score=14.64 Aligned_cols=17 Identities=29% Similarity=0.487 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHhccccc
Q 017672 297 LIITAIFSAFLWKETLH 313 (368)
Q Consensus 297 pv~~~i~~~~~~~e~~~ 313 (368)
.++++.+-.++|.|+|.
T Consensus 12 c~i~lfffaiffreppr 28 (30)
T d2axtt1 12 CIIALFFFAIFFREPPR 28 (30)
T ss_dssp HHHHHHHHHHHTSCCCC
T ss_pred HHHHHHHHHHHhcCCCC
Confidence 34444444555667663
No 6
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=8.73 E-value=60 Score=21.06 Aligned_cols=19 Identities=16% Similarity=-0.123 Sum_probs=9.5
Q ss_pred HHHHHHHHHhhccccccch
Q 017672 321 VLLVGGLYSVLWGKNREER 339 (368)
Q Consensus 321 ~lii~gi~~~~~~~~~~~~ 339 (368)
.+++.|.+++...|.|+++
T Consensus 29 ~v~V~~~~~~~~~ryR~~~ 47 (91)
T d1fftb2 29 VIPAILMAVGFAWKYRASN 47 (91)
T ss_dssp TTHHHHHHHTTTTTTTTST
T ss_pred HHHHHHHHHhhheeeeccC
Confidence 3344555555555555443
No 7
>d1iwga7 f.35.1.1 (A:7-37,A:331-498) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=5.47 E-value=1.3e+02 Score=22.28 Aligned_cols=27 Identities=15% Similarity=0.052 Sum_probs=17.5
Q ss_pred HHHHHHHHhcccccchhHhHHHHHHHH
Q 017672 300 TAIFSAFLWKETLHWGSVGGAVLLVGG 326 (368)
Q Consensus 300 ~~i~~~~~~~e~~~~~~~~G~~lii~g 326 (368)
.......++|..++.....+..++++.
T Consensus 79 ~~~~~m~~~g~~l~~~s~~~~~i~igi 105 (199)
T d1iwga7 79 GTFAVLAAFGFSINTLTMFGMVLAIGL 105 (199)
T ss_dssp HHHHHHHTTTCCSCHHHHHHHHHHHHH
T ss_pred HHHHHhhcCCCchHHHHHHHHHHHHHH
Confidence 333344567888887777777766654
No 8
>d1gl4a1 d.22.1.2 (A:399-631) Domain G2 of nidogen-1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=3.62 E-value=1.5e+02 Score=22.96 Aligned_cols=36 Identities=17% Similarity=0.158 Sum_probs=28.1
Q ss_pred HhccccChhhhhhcccchhHHHHHHHHHHhccccccc
Q 017672 99 VAINYTTATFAAATTNTIPAITFVLAGLLRIESISIK 135 (368)
Q Consensus 99 ~al~~~~~~~~~~i~~~~p~~~~ll~~~~~~e~~~~~ 135 (368)
.++..+|+.....+..+.|+.. .++|+|-+|.-...
T Consensus 43 taIs~IP~~~G~~L~~L~~ig~-~igWlFA~e~~~a~ 78 (233)
T d1gl4a1 43 TAISTIPETVGYSLLPLAPIGG-IIGWMFAVEQDGFK 78 (233)
T ss_dssp EEEESCCHHHHGGGTTCTHHHH-HHHHHTCEECTTCC
T ss_pred EEccCCChhHhhhhhhhhhhcC-ceeeeEEeecCCcc
Confidence 4677888888888888888776 67899988775544
No 9
>d1kqfb2 f.23.22.1 (B:246-290) Iron-sulfur subunit of formate dehydrogenase N, transmembrane anchor {Escherichia coli [TaxId: 562]}
Probab=3.03 E-value=4.3e+02 Score=14.40 Aligned_cols=25 Identities=28% Similarity=0.384 Sum_probs=16.2
Q ss_pred HhcccccchhHhHHHHHHHHHHHhh
Q 017672 307 LWKETLHWGSVGGAVLLVGGLYSVL 331 (368)
Q Consensus 307 ~~~e~~~~~~~~G~~lii~gi~~~~ 331 (368)
++....-+...+|++..+++.++..
T Consensus 7 lWKgv~Kpl~~~~~~~~~~~~~fHY 31 (45)
T d1kqfb2 7 LWKGALKPLAAAGFIATFAGLIFHY 31 (45)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHhh
Confidence 3555566667777777777766643
No 10
>d1xioa_ f.13.1.1 (A:) Sensory rhodopsin {Anabaena sp. PCC 7120 [TaxId: 103690]}
Probab=2.27 E-value=1.1e+03 Score=17.01 Aligned_cols=173 Identities=12% Similarity=0.013 Sum_probs=0.0
Q ss_pred CChHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccChhhhhhccc-----ch
Q 017672 42 MNPFVFVVYRQAFASLALSPFAFFLESQNASPLSYSSVCKIFLVSLFGLTLSLNLYYVAINYTTATFAAATTN-----TI 116 (368)
Q Consensus 42 ~~~~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~~~~i~~-----~~ 116 (368)
|+.....++-..........+.+...++..++.+.......++.++.+..-.......+....+........+ +.
T Consensus 1 m~~~s~~~wv~~~~m~~~~~~f~~~~~~~~~~~r~~~~~~~~I~~iA~~~Y~~ma~~~g~~~~~~~~v~~~RYiDW~lTt 80 (226)
T d1xioa_ 1 MNLESLLHWIYVAGMTIGALHFWSLSRNPRGVPQYEYLVAMFIPIWSGLAYMAMAIDQGKVEAAGQIAHYARYIDWMVTT 80 (226)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHTSCTTCCHHHHHHHHHHHHHHHHHHHHHHHC---------CTTHHHHHHHHHHH
T ss_pred CchHhHHHHHHHHHHHHHHHHHHHHHccCCccchhhHHHHHHHHHHHHHHHHHHHhcCCeeeecCceeeHHHHHHHHHcc
Q ss_pred hHHHHHHHHHHhcccccccccccccchhhHHHhHHhHHHHhhhcCCCCCCCCCChhhhhcccCCCCCCCCCCchh-HHHH
Q 017672 117 PAITFVLAGLLRIESISIKYLHGIAKVLGSVVSVSGALVFAFVKGPPLRFLNWYPEIQKQVSESSPTNDCPIGRW-IKGA 195 (368)
Q Consensus 117 p~~~~ll~~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~G~ 195 (368)
|+....+..+...++-..+ +.+...+...-++++...-++. ..... ..+.
T Consensus 81 Plll~~l~l~~~~~~~~~~------~~~~~li~~~~~Mi~~G~~g~~-----------------------~~~~~~~~~~ 131 (226)
T d1xioa_ 81 PLLLLSLSWTAMQFIKKDW------TLIGFLMSTQIVVITSGLIADL-----------------------SERDWVRYLW 131 (226)
T ss_dssp HHHHHHHHHHHTTTSCCCH------HHHHHHHHHHHHHHHHHHHHHH-----------------------CSSHHHHHHH
T ss_pred cHHHHHHHHHHHHhccccH------HHHHHHHHHHHHHHHHHHHHhc-----------------------ccchHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhCCCcchhHHHHHHHHHHHHHHHHHH
Q 017672 196 LIMISANTAWSLWLVLQGYIIKQYPAKVRLTTLQCFFSCIQSAFWAVA 243 (368)
Q Consensus 196 ~~~l~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (368)
...-..++.+-+|.+...-..+....+-...........+........
T Consensus 132 f~~~~~~f~~i~y~l~~~~~~~~~~~~~~~~~~~~~l~~~~~v~W~~Y 179 (226)
T d1xioa_ 132 YICGVCAFLIILWGIWNPLRAKTRTQSSELANLYDKLVTYFTVLWIGY 179 (226)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHH
Done!