Query 017673
Match_columns 368
No_of_seqs 239 out of 2880
Neff 9.4
Searched_HMMs 46136
Date Fri Mar 29 02:26:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017673.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017673hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0787 Dehydrogenase kinase [ 100.0 1.9E-45 4.1E-50 325.6 35.1 349 13-368 37-390 (414)
2 COG5002 VicK Signal transducti 100.0 4.5E-38 9.7E-43 276.2 16.9 234 105-364 220-453 (459)
3 COG2205 KdpD Osmosensitive K+ 100.0 4.3E-36 9.3E-41 290.4 21.1 228 104-362 654-882 (890)
4 COG4191 Signal transduction hi 100.0 8.7E-35 1.9E-39 273.3 24.5 272 50-360 329-602 (603)
5 PRK09303 adaptive-response sen 100.0 2.7E-33 5.8E-38 266.0 24.0 229 108-361 149-379 (380)
6 PRK10618 phosphotransfer inter 100.0 7E-32 1.5E-36 277.5 23.3 221 108-360 448-673 (894)
7 PRK11006 phoR phosphate regulo 100.0 2.1E-31 4.6E-36 257.6 23.8 223 108-360 202-424 (430)
8 PRK15347 two component system 100.0 3.1E-30 6.7E-35 271.9 26.4 217 110-361 398-616 (921)
9 PRK10841 hybrid sensory kinase 100.0 1.9E-30 4.2E-35 270.1 22.6 221 109-360 446-668 (924)
10 PRK11091 aerobic respiration c 100.0 1.9E-30 4.2E-35 268.5 22.2 222 110-361 283-507 (779)
11 TIGR02956 TMAO_torS TMAO reduc 100.0 4.7E-30 1E-34 271.8 25.3 221 108-361 462-685 (968)
12 COG3852 NtrB Signal transducti 100.0 4.5E-30 9.8E-35 222.8 19.7 216 108-361 130-356 (363)
13 PRK10815 sensor protein PhoQ; 100.0 2.7E-29 5.9E-34 245.4 27.8 239 79-362 243-481 (485)
14 PRK11466 hybrid sensory histid 100.0 5.4E-30 1.2E-34 269.8 23.5 220 108-360 442-663 (914)
15 PRK10604 sensor protein RstB; 100.0 6.4E-29 1.4E-33 240.3 29.1 242 76-363 186-427 (433)
16 PRK11107 hybrid sensory histid 100.0 9.5E-30 2.1E-34 268.1 24.3 220 110-360 293-519 (919)
17 TIGR02938 nifL_nitrog nitrogen 100.0 1.2E-29 2.6E-34 248.8 23.1 220 108-359 274-494 (494)
18 PRK10549 signal transduction h 100.0 1.3E-28 2.7E-33 240.5 29.8 249 76-363 214-462 (466)
19 PRK10490 sensor protein KdpD; 100.0 2E-29 4.3E-34 261.5 22.1 221 109-361 663-884 (895)
20 PRK10364 sensor protein ZraS; 100.0 5E-29 1.1E-33 242.9 23.7 216 108-362 235-451 (457)
21 PRK10755 sensor protein BasS/P 100.0 1.6E-28 3.5E-33 231.7 26.1 238 78-362 113-353 (356)
22 PRK13837 two-component VirA-li 100.0 7.9E-29 1.7E-33 257.2 23.1 216 106-361 446-677 (828)
23 COG5000 NtrY Signal transducti 100.0 1.7E-28 3.6E-33 230.4 22.6 228 103-359 479-708 (712)
24 TIGR03785 marine_sort_HK prote 100.0 1.8E-28 4E-33 248.8 23.9 243 77-358 460-703 (703)
25 TIGR01386 cztS_silS_copS heavy 100.0 4.9E-28 1.1E-32 235.6 25.1 241 78-358 217-457 (457)
26 COG4251 Bacteriophytochrome (l 100.0 1.8E-28 3.9E-33 230.6 20.5 225 109-365 523-747 (750)
27 PRK09835 sensor kinase CusS; P 100.0 2E-27 4.4E-32 233.0 25.4 243 79-360 239-481 (482)
28 PRK11100 sensory histidine kin 100.0 3.6E-27 7.7E-32 230.5 25.8 244 76-360 231-474 (475)
29 TIGR02966 phoR_proteo phosphat 100.0 2.3E-27 5E-32 220.7 22.8 219 111-357 115-333 (333)
30 PRK10337 sensor protein QseC; 100.0 8.1E-27 1.7E-31 226.8 26.1 236 78-357 213-449 (449)
31 TIGR02916 PEP_his_kin putative 100.0 3.8E-27 8.1E-32 239.9 23.5 210 104-358 469-679 (679)
32 PRK09959 hybrid sensory histid 100.0 3.7E-27 8E-32 254.5 22.7 220 109-360 711-937 (1197)
33 PRK11073 glnL nitrogen regulat 100.0 7.6E-27 1.6E-31 219.5 20.6 208 109-359 129-347 (348)
34 PRK09470 cpxA two-component se 100.0 8E-26 1.7E-30 220.4 27.8 241 77-361 218-459 (461)
35 PRK11360 sensory histidine kin 99.9 1.5E-26 3.4E-31 232.2 22.1 216 108-363 388-605 (607)
36 PRK09467 envZ osmolarity senso 99.9 4.2E-25 9.2E-30 213.9 28.9 230 77-360 204-434 (435)
37 PRK13557 histidine kinase; Pro 99.9 1.7E-25 3.7E-30 222.2 21.7 220 108-361 161-396 (540)
38 COG0642 BaeS Signal transducti 99.9 1.2E-24 2.6E-29 201.3 22.7 219 110-363 115-333 (336)
39 COG4192 Signal transduction hi 99.9 9.5E-24 2.1E-28 192.0 20.9 272 49-360 395-667 (673)
40 PRK11086 sensory histidine kin 99.9 2.3E-23 5E-28 207.2 20.4 125 216-362 411-538 (542)
41 PRK15053 dpiB sensor histidine 99.9 4.9E-23 1.1E-27 205.2 22.3 204 108-362 336-542 (545)
42 COG3290 CitA Signal transducti 99.9 4.6E-22 9.9E-27 186.7 19.9 207 103-363 326-535 (537)
43 PRK13560 hypothetical protein; 99.9 9.9E-22 2.2E-26 204.4 23.9 201 109-361 604-805 (807)
44 PRK11644 sensory histidine kin 99.9 4.8E-21 1.1E-25 187.5 24.5 191 110-359 302-494 (495)
45 PF02518 HATPase_c: Histidine 99.9 6.7E-23 1.4E-27 160.3 8.8 110 231-359 1-110 (111)
46 PF10436 BCDHK_Adom3: Mitochon 99.9 1.8E-20 4E-25 154.9 16.8 159 27-188 1-162 (164)
47 PRK13559 hypothetical protein; 99.8 6.2E-19 1.3E-23 166.7 20.0 187 110-360 170-360 (361)
48 PRK10600 nitrate/nitrite senso 99.8 8.9E-18 1.9E-22 168.1 23.2 160 149-360 396-557 (569)
49 PRK10935 nitrate/nitrite senso 99.8 7E-18 1.5E-22 168.8 22.2 191 115-362 365-562 (565)
50 PRK10547 chemotaxis protein Ch 99.8 3E-18 6.6E-23 170.2 19.1 156 191-361 342-525 (670)
51 COG0643 CheA Chemotaxis protei 99.7 3.9E-17 8.5E-22 163.0 14.8 158 191-360 389-574 (716)
52 PRK04184 DNA topoisomerase VI 99.6 1.1E-15 2.4E-20 147.1 11.3 117 230-360 31-153 (535)
53 smart00387 HATPase_c Histidine 99.6 4.6E-15 9.9E-20 114.6 10.3 109 232-359 2-110 (111)
54 COG4585 Signal transduction hi 99.6 5.1E-14 1.1E-18 133.2 18.4 91 231-359 275-365 (365)
55 COG3850 NarQ Signal transducti 99.6 1.2E-12 2.6E-17 122.8 22.3 126 192-360 442-569 (574)
56 COG3920 Signal transduction hi 99.5 5.7E-12 1.2E-16 109.8 22.1 194 111-362 20-218 (221)
57 TIGR01925 spIIAB anti-sigma F 99.5 1.1E-13 2.4E-18 112.2 10.6 100 233-357 37-136 (137)
58 PRK14868 DNA topoisomerase VI 99.5 9.2E-14 2E-18 136.6 11.1 122 216-349 24-148 (795)
59 cd00075 HATPase_c Histidine ki 99.5 1.2E-13 2.6E-18 104.9 9.1 103 236-357 1-103 (103)
60 TIGR01052 top6b DNA topoisomer 99.5 2.1E-13 4.6E-18 130.1 11.2 111 229-353 22-134 (488)
61 PRK03660 anti-sigma F factor; 99.4 1.2E-12 2.7E-17 107.2 11.7 106 232-362 36-141 (146)
62 COG3851 UhpB Signal transducti 99.4 2.4E-11 5.2E-16 108.6 19.9 189 111-359 304-494 (497)
63 PRK14867 DNA topoisomerase VI 99.4 1.1E-12 2.4E-17 128.9 11.2 114 234-360 35-150 (659)
64 COG3275 LytS Putative regulato 99.3 2.7E-10 5.9E-15 105.6 17.6 159 165-363 394-555 (557)
65 PRK04069 serine-protein kinase 99.3 4.4E-11 9.5E-16 99.5 11.1 104 233-359 40-143 (161)
66 PF14501 HATPase_c_5: GHKL dom 99.2 4.3E-10 9.2E-15 85.8 13.4 99 232-358 2-100 (100)
67 TIGR01924 rsbW_low_gc serine-p 99.2 2.5E-10 5.5E-15 94.6 11.0 103 234-359 41-143 (159)
68 COG2972 Predicted signal trans 99.2 2.7E-09 5.9E-14 103.8 19.0 127 207-361 325-454 (456)
69 COG4564 Signal transduction hi 99.1 2.7E-09 5.9E-14 94.5 15.9 111 216-362 338-450 (459)
70 COG1389 DNA topoisomerase VI, 98.9 1.7E-08 3.8E-13 93.3 10.5 120 233-366 34-157 (538)
71 PF13581 HATPase_c_2: Histidin 98.8 5.6E-08 1.2E-12 77.2 10.1 95 234-356 30-124 (125)
72 COG2172 RsbW Anti-sigma regula 98.5 1.3E-06 2.8E-11 70.9 11.3 96 234-353 39-134 (146)
73 KOG0519 Sensory transduction h 98.5 4.7E-08 1E-12 100.6 2.1 216 113-361 224-490 (786)
74 TIGR00585 mutl DNA mismatch re 98.5 4.7E-07 1E-11 83.7 8.4 60 235-305 22-81 (312)
75 PF13589 HATPase_c_3: Histidin 98.0 1.7E-06 3.6E-11 70.0 1.2 101 237-358 4-106 (137)
76 PRK00095 mutL DNA mismatch rep 97.9 2.6E-05 5.5E-10 78.6 7.2 60 235-305 22-81 (617)
77 PRK05559 DNA topoisomerase IV 97.8 6E-05 1.3E-09 75.9 8.0 89 232-335 34-130 (631)
78 PF00512 HisKA: His Kinase A ( 97.8 6.2E-05 1.3E-09 52.6 5.6 63 111-178 3-65 (68)
79 PRK05218 heat shock protein 90 97.1 0.00074 1.6E-08 67.9 6.2 59 238-298 29-95 (613)
80 COG0323 MutL DNA mismatch repa 97.0 0.00027 6E-09 71.1 1.9 59 235-305 23-82 (638)
81 smart00433 TOP2c Topoisomerase 97.0 0.001 2.2E-08 66.8 5.6 48 236-292 2-49 (594)
82 PRK05644 gyrB DNA gyrase subun 96.9 0.0014 3.1E-08 66.1 5.8 51 232-291 34-84 (638)
83 PTZ00272 heat shock protein 83 96.9 0.00095 2.1E-08 67.5 4.4 58 239-296 29-92 (701)
84 TIGR01059 gyrB DNA gyrase, B s 96.7 0.0046 1E-07 62.9 7.7 51 232-291 27-77 (654)
85 PRK14083 HSP90 family protein; 96.6 0.0022 4.9E-08 64.0 4.5 58 238-296 26-83 (601)
86 PTZ00130 heat shock protein 90 96.5 0.0039 8.4E-08 63.6 5.3 55 240-294 93-153 (814)
87 TIGR01055 parE_Gneg DNA topois 96.5 0.0047 1E-07 62.2 5.8 87 235-336 30-124 (625)
88 cd00082 HisKA Histidine Kinase 96.4 0.028 6E-07 37.6 7.9 62 110-177 4-65 (65)
89 PRK14939 gyrB DNA gyrase subun 96.4 0.0044 9.6E-08 63.3 5.1 49 234-291 36-84 (756)
90 TIGR01058 parE_Gpos DNA topois 96.4 0.009 2E-07 60.3 7.2 51 232-291 31-81 (637)
91 COG5381 Uncharacterized protei 96.0 0.0053 1.2E-07 48.4 2.6 49 234-291 62-110 (184)
92 smart00388 HisKA His Kinase A 96.0 0.049 1.1E-06 36.6 7.3 61 111-178 3-63 (66)
93 COG0326 HtpG Molecular chapero 95.4 0.017 3.6E-07 57.1 4.1 55 239-293 31-91 (623)
94 PF10090 DUF2328: Uncharacteri 94.7 1.6 3.4E-05 36.9 13.5 99 233-356 83-181 (182)
95 COG0187 GyrB Type IIA topoisom 94.5 0.011 2.3E-07 58.1 0.0 87 234-335 35-129 (635)
96 PLN03237 DNA topoisomerase 2; 94.0 0.13 2.7E-06 56.1 6.7 90 235-337 77-174 (1465)
97 KOG1979 DNA mismatch repair pr 93.6 0.044 9.4E-07 53.2 2.2 56 238-304 30-85 (694)
98 PTZ00108 DNA topoisomerase 2-l 93.5 0.11 2.5E-06 56.4 5.4 111 235-359 57-176 (1388)
99 COG5385 Uncharacterized protei 93.3 3.8 8.3E-05 33.5 14.9 193 113-358 18-213 (214)
100 KOG1978 DNA mismatch repair pr 93.2 0.067 1.5E-06 53.0 2.9 59 236-305 21-79 (672)
101 PHA02569 39 DNA topoisomerase 93.0 0.067 1.5E-06 53.7 2.7 51 235-292 45-95 (602)
102 PLN03128 DNA topoisomerase 2; 91.8 0.31 6.8E-06 52.4 5.9 50 235-291 52-101 (1135)
103 KOG1977 DNA mismatch repair pr 91.7 0.15 3.3E-06 50.8 3.1 59 235-305 21-79 (1142)
104 PTZ00109 DNA gyrase subunit b; 91.1 0.041 8.9E-07 56.8 -1.3 51 232-291 126-176 (903)
105 KOG0020 Endoplasmic reticulum 68.2 5 0.00011 38.7 3.1 54 239-292 99-158 (785)
106 KOG0019 Molecular chaperone (H 62.7 8.1 0.00018 38.3 3.5 58 236-293 58-119 (656)
107 PF14689 SPOB_a: Sensor_kinase 56.1 49 0.0011 22.3 5.5 47 104-161 6-52 (62)
108 PF07568 HisKA_2: Histidine ki 56.0 69 0.0015 22.5 7.8 73 117-207 2-74 (76)
109 KOG0355 DNA topoisomerase type 53.7 15 0.00033 37.9 3.7 50 234-291 52-101 (842)
110 COG4191 Signal transduction hi 52.9 42 0.00091 33.5 6.5 40 113-157 375-415 (603)
111 COG2865 Predicted transcriptio 45.5 48 0.001 32.4 5.6 105 238-360 273-381 (467)
112 COG0813 DeoD Purine-nucleoside 45.5 30 0.00065 30.0 3.8 55 225-289 15-69 (236)
113 PF07492 Trehalase_Ca-bi: Neut 42.4 21 0.00046 20.2 1.6 15 272-286 10-24 (30)
114 PF01106 NifU: NifU-like domai 39.5 47 0.001 22.9 3.4 27 330-358 8-34 (68)
115 PF15290 Syntaphilin: Golgi-lo 33.6 1.8E+02 0.0038 26.3 6.7 54 48-106 71-124 (305)
116 PF03891 DUF333: Domain of unk 32.8 1.3E+02 0.0028 19.4 4.4 31 330-360 7-37 (50)
117 PF09182 PuR_N: Bacterial puri 30.7 99 0.0021 21.5 3.8 28 327-354 41-69 (70)
118 PF00367 PTS_EIIB: phosphotran 27.5 65 0.0014 19.0 2.2 30 330-359 1-30 (35)
119 KOG4013 Predicted Cu2+ homeost 22.6 77 0.0017 26.9 2.5 19 326-344 166-184 (255)
120 KOG3938 RGS-GAIP interacting p 20.3 1E+02 0.0023 27.5 3.0 27 262-288 125-151 (334)
No 1
>KOG0787 consensus Dehydrogenase kinase [Signal transduction mechanisms]
Probab=100.00 E-value=1.9e-45 Score=325.63 Aligned_cols=349 Identities=43% Similarity=0.768 Sum_probs=313.9
Q ss_pred HHHHHHHhhhcCCCCCcCHHHHHhcCCCCChHHHHHHHHHHHHHhHHHHHHHHHHHhcCCccccCChhHHHHHHHHHHHH
Q 017673 13 SLIEEVGRWGCMKQTGVSLRYMMEFGSKPTDKNLLISAQFLHKELPIRIARRAIELETLPYGLSEKPAVLKVRDWYLDSF 92 (368)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~rv~~r~~~l~~~~~~l~~~~~i~~~~~~~~~~~ 92 (368)
.+.+.|..|+.+++.|+|+.|+++|+.+++......++.|+++||+.|+++++++++.+|+.+..||++..+.+||.++|
T Consensus 37 ~~~~~i~~~s~f~pspls~kq~l~fg~~~t~~~e~~S~~flr~ELpvRlA~~lkeiq~LP~nl~~npsi~~V~s~Y~~sf 116 (414)
T KOG0787|consen 37 SLPEYINPYSSFPPSPLSLKQFLDFGSDLTNACEKTSGIFLRQELPVRLANRLKEIQLLPFNLVNNPSIQLVQSWYIRSF 116 (414)
T ss_pred chHHHhchhhcCCCCcccHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhccCchHHHHHHHHHHHH
Confidence 57899999999999999999999999988888888999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCCCCC-chhHHHHHHHHHHHHHhccCchHHHHHHHHHHhcccCccccccChHHHHHHHHHHHHhhHHHHHhHHH
Q 017673 93 RDLRSFPDIRS-TSDERDFTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIGQ 171 (368)
Q Consensus 93 ~~l~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~l~~i~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~li~~ 171 (368)
+++.....+.. .++..+|+..+..+..++...+..|+.|+.|++..... -.....++.+|++++++++++|+|+++
T Consensus 117 e~ll~~~~~~~~~~~~~qf~d~l~~l~~rH~dvv~~lA~Gl~E~~~~~~d---p~~~~~iqyFLdr~y~sRIsiRMLv~q 193 (414)
T KOG0787|consen 117 EDLLEFPTISPDLEDLSQFNDLLNTLRNRHNDVVPTLAQGLIEYREKDGD---PVTEKNIQYFLDRFYMSRISIRMLVNQ 193 (414)
T ss_pred HHHHccCCCCcchhhHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhcCC---cchHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999988887 88889999999999999999999999999998866551 112568999999999999999999999
Q ss_pred HhhhcC--CCCCCCcccccccCCCHHHHHHHHHHHHHHHHHhhhCCCCceEEEcCCCceee-ccchhHHHHHHHHHHHHH
Q 017673 172 HVELHN--PNPPPHCIGYIDTKMSPVQVARNASEHARCVCLREYGSAPDFNIYGDPSFTFP-YVPSHLHLMVFELVKNSL 248 (368)
Q Consensus 172 ~l~l~~--~~~~~~~~~~~~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~d~~~l~~vl~nLl~NAi 248 (368)
++.+.. .......+|.....|++.++|+++.+.++.+|..+|...+++.++++....+. +.|.+|..++.+|++||.
T Consensus 194 h~~l~~~~kp~~~~~iG~I~~~c~v~~vi~~a~e~ar~lCd~yy~~sPel~i~~~~a~~~~vyvPshL~ymlfElfKNam 273 (414)
T KOG0787|consen 194 HLLLFASGKPDHPRHIGIIDPRCSVKKVIKDASENARFLCDQYYLNSPELIIEGHNALSFTVYVPSHLYYMLFELFKNAM 273 (414)
T ss_pred hhheecCCCCCCcceeeeeCCCCCHHHHHHHHHHHHHHHHHHhccCCCeeEecCcccccCccccchHHHHHHHHHHHHHH
Confidence 999976 22234589999999999999999999999999999999999999998888877 799999999999999999
Q ss_pred HHHHHhhcCCCCCCCCEEEEEEeCCCeEEEEEeeeCCCCCCCCcccccccccccCCCCCCcccccccCCCCCCccccChH
Q 017673 249 RAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAADKGTMAGYGYGLP 328 (368)
Q Consensus 249 ~~~~~~~~~~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~~~~~~~~~~~g~GlGL~ 328 (368)
+|+-++|+......++|.|.+...++.+.|.|+|.|+||+.+..+++|...|+|.+.++-+. .+..+..|.|+||+
T Consensus 274 rATve~h~~~~~~~ppI~V~V~~gdeDl~ikISDrGGGV~~~~~drlf~Y~ySTa~~~~~d~----~~~~plaGfG~GLP 349 (414)
T KOG0787|consen 274 RATVEHHGDDGDELPPIKVTVAKGDEDLLIKISDRGGGVPHRDIDRLFSYMYSTAPAPSSDN----NRTAPLAGFGFGLP 349 (414)
T ss_pred HHHHHHhccCCCCCCCeEEEEecCCcceEEEEecCCCCcChhHHHHHHhhhcccCCCCCCCC----CCcCcccccccCCc
Confidence 99999888776557889999999999999999999999999999999999999987643111 12455789999999
Q ss_pred HHHHHHHHhCCeEEEEecCCCceEEEEEeCCCCCC-CCCCC
Q 017673 329 ISRLYARYFGGDLQIISMEGYGTDAYLHLSRLGDS-QEPLP 368 (368)
Q Consensus 329 i~k~iv~~~gG~i~v~s~~g~Gt~f~i~lP~~~~~-~e~~~ 368 (368)
|+|.+++++||++.+.|..|.||+++|.|...... .|.+|
T Consensus 350 isrlYa~yf~Gdl~L~SleG~GTD~yI~Lk~ls~~~~e~l~ 390 (414)
T KOG0787|consen 350 ISRLYARYFGGDLKLQSLEGIGTDVYIYLKALSMEAPESLP 390 (414)
T ss_pred HHHHHHHHhCCCeeEEeeeccccceEEEeccCCccchhhcc
Confidence 99999999999999999999999999999987543 45443
No 2
>COG5002 VicK Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=100.00 E-value=4.5e-38 Score=276.23 Aligned_cols=234 Identities=19% Similarity=0.222 Sum_probs=202.1
Q ss_pred hhHHHHHHHHHHHHHhccCchHHHHHHHHHHhcccCccccccChHHHHHHHHHHHHhhHHHHHhHHHHhhhcCCCCCCCc
Q 017673 105 SDERDFTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIGQHVELHNPNPPPHC 184 (368)
Q Consensus 105 ~~~~~~~~~l~~~~~~~~~~l~~i~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~li~~~l~l~~~~~~~~~ 184 (368)
+.++..+++++.++|++|+||+++.+.+..|....- .+.+-...|+.....+..+|-.||++++.+|+. +...
T Consensus 220 k~e~ErRefvanvSHElRTPltsmksyLEALe~ga~-----~d~eiAp~Fl~vt~~ETeRMiRlV~DLl~lsr~--d~~~ 292 (459)
T COG5002 220 KVERERREFVANVSHELRTPLTSMKSYLEALEEGAW-----EDKEIAPRFLRVTLNETERMIRLVNDLLQLSRM--DNAR 292 (459)
T ss_pred HHHHHHHHHHHhcchhhcCchHHHHHHHHHHhcCCc-----cChhhhhHHHHHhHHHHHHHHHHHHHHHHHccC--cchh
Confidence 334567899999999999999999988877764433 334457889998888999999999999999999 6677
Q ss_pred ccccccCCCHHHHHHHHHHHHHHHHHhhhCCCCceEEEcCCCceeeccchhHHHHHHHHHHHHHHHHHHhhcCCCCCCCC
Q 017673 185 IGYIDTKMSPVQVARNASEHARCVCLREYGSAPDFNIYGDPSFTFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPP 264 (368)
Q Consensus 185 ~~~~~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~d~~~l~~vl~nLl~NAi~~~~~~~~~~~~~~~~ 264 (368)
.+++.+.+++...+..+++.+........... -+.--...++++..|++.+.||+.|+|+||+||+|. |+.
T Consensus 293 ~qln~e~inft~fl~~ii~R~e~~~~~e~~~~-~vR~~p~~~~~veiD~DK~tQVldNii~NA~KYsP~--------Gg~ 363 (459)
T COG5002 293 YQLNKEWINFTAFLNEIINRFEMILKKETIAR-FVRDIPKQDIWVEIDPDKMTQVLDNIISNALKYSPD--------GGR 363 (459)
T ss_pred hhhhHHHHHhHHHHHHHHHHHHHHHhhHHHHH-HHhcCCCCceEEEeChhHHHHHHHHHHHHHhhcCCC--------CCe
Confidence 88889999999999999999887755441110 122223467889999999999999999999999999 799
Q ss_pred EEEEEEeCCCeEEEEEeeeCCCCCCCCcccccccccccCCCCCCcccccccCCCCCCccccChHHHHHHHHHhCCeEEEE
Q 017673 265 IRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAADKGTMAGYGYGLPISRLYARYFGGDLQII 344 (368)
Q Consensus 265 I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~i~v~ 344 (368)
|++++...++++.|+|+|+|.|||.+.+++||++||+.+.. +.+..+|+||||+|+|.+++.|||.+|.+
T Consensus 364 Itv~~~~~~~~v~iSI~D~G~gIPk~d~~~iFdrfyRvdkA----------RsR~~gGTGLGLaIakeiV~~hgG~iWA~ 433 (459)
T COG5002 364 ITVSVKQRETWVEISISDQGLGIPKEDLEKIFDRFYRVDKA----------RSRKMGGTGLGLAIAKEIVQAHGGRIWAE 433 (459)
T ss_pred EEEEEeeeCcEEEEEEccCCCCCCchhHHHHHHHHhhhhhh----------hhhcCCCCchhHHHHHHHHHHhCCeEEEe
Confidence 99999999999999999999999999999999999999887 67888999999999999999999999999
Q ss_pred ecCCCceEEEEEeCCCCCCC
Q 017673 345 SMEGYGTDAYLHLSRLGDSQ 364 (368)
Q Consensus 345 s~~g~Gt~f~i~lP~~~~~~ 364 (368)
|..|+||+|+++||..+...
T Consensus 434 s~~gkgtt~~ftLPy~~~~~ 453 (459)
T COG5002 434 SEEGKGTTFSFTLPYSGEAG 453 (459)
T ss_pred cccCCceEEEEEecccCccc
Confidence 99999999999999886543
No 3
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=100.00 E-value=4.3e-36 Score=290.36 Aligned_cols=228 Identities=18% Similarity=0.207 Sum_probs=199.4
Q ss_pred chhHHHHHHHHHHHHHhccCchHHHHHHHHHHhcccCccccccChHHHHHHHHHHHHhhHHHHHhHHHHhhhcCCCCCCC
Q 017673 104 TSDERDFTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIGQHVELHNPNPPPH 183 (368)
Q Consensus 104 ~~~~~~~~~~l~~~~~~~~~~l~~i~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~li~~~l~l~~~~~~~~ 183 (368)
.+.++-.+.+++.++||+|+||+.|.+.+..|..... ....+...+.+..+..+...+..+|.++|+++|. +++
T Consensus 654 ~e~E~lRsaLL~sISHDLRTPLt~i~Gaa~tL~~~~~----~l~~~~~aeLl~~I~ees~~L~rlV~NLLdmTRi--~sG 727 (890)
T COG2205 654 AERERLRSALLASISHDLRTPLTAIMGAAETLLLDGE----ALSPEDRAELLSSIREESERLTRLVTNLLDMTRL--QSG 727 (890)
T ss_pred HHHHHHHHHHHHHhhccccCcHHHHhhhHHHhhhccc----ccCcHhHHHHHHHHHHHHHHHHHHHHHHHhHHHH--hcC
Confidence 3444555889999999999999999977777765554 2335567888889999999999999999999999 788
Q ss_pred cccccccCCCHHHHHHHHHHHHHHHHHhhhCCCCceEEEcCCCce-eeccchhHHHHHHHHHHHHHHHHHHhhcCCCCCC
Q 017673 184 CIGYIDTKMSPVQVARNASEHARCVCLREYGSAPDFNIYGDPSFT-FPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVA 262 (368)
Q Consensus 184 ~~~~~~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~d~~~l~~vl~nLl~NAi~~~~~~~~~~~~~~ 262 (368)
.+.+...+..+.+++.+++..+....... .+.+..+.+.+ +.+|+..++||+.|||+||+||+++ +
T Consensus 728 ~~~l~~~~~~veEvVg~Al~r~~k~~~~~-----~i~v~~~~dl~li~~D~~LieQVLiNLleNA~Kyap~--------~ 794 (890)
T COG2205 728 GVNLKLDWVLVEEVVGEALQRLRKRFTGH-----KIVVSVPVDLPLIHVDSPLIEQVLINLLENALKYAPP--------G 794 (890)
T ss_pred CcccccchhhHHHHHHHHHHHhhhhcCCc-----eEEEecCCCCceEecCHHHHHHHHHHHHHHHHhhCCC--------C
Confidence 89999999999999999998877655544 57777677654 8999999999999999999999998 6
Q ss_pred CCEEEEEEeCCCeEEEEEeeeCCCCCCCCcccccccccccCCCCCCcccccccCCCCCCccccChHHHHHHHHHhCCeEE
Q 017673 263 PPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAADKGTMAGYGYGLPISRLYARYFGGDLQ 342 (368)
Q Consensus 263 ~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~i~ 342 (368)
+.|.|.+..+.+.++|.|.|+|+|||++++++||++||+.... +...|+||||+||+.|++.|||+|+
T Consensus 795 s~I~I~~~~~~~~v~~~V~DeGpGIP~~~~~~IFD~F~r~~~~------------~~~~G~GLGLsIc~~iv~ahgG~I~ 862 (890)
T COG2205 795 SEIRINAGVERENVVFSVIDEGPGIPEGELERIFDKFYRGNKE------------SATRGVGLGLAICRGIVEAHGGTIS 862 (890)
T ss_pred CeEEEEEEEecceEEEEEEeCCCCCChhHHHHhhhhhhcCCCC------------CCCCCccccHHHHHHHHHHcCCeEE
Confidence 8899999999999999999999999999999999999999865 2267999999999999999999999
Q ss_pred EEecCCCceEEEEEeCCCCC
Q 017673 343 IISMEGYGTDAYLHLSRLGD 362 (368)
Q Consensus 343 v~s~~g~Gt~f~i~lP~~~~ 362 (368)
+.+.+++|++|++.||....
T Consensus 863 a~~~~~gGa~f~~~LP~~~~ 882 (890)
T COG2205 863 AENNPGGGAIFVFTLPVEED 882 (890)
T ss_pred EEEcCCCceEEEEEeecCCC
Confidence 99999999999999998754
No 4
>COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms]
Probab=100.00 E-value=8.7e-35 Score=273.28 Aligned_cols=272 Identities=18% Similarity=0.202 Sum_probs=211.6
Q ss_pred HHHHHHHhHHHHHHHHHHHhcCCccccCChhHHHHHHHHHHHHHHhhc-CCCCCCchhHHHHHHHHHHHHHhccCchHHH
Q 017673 50 AQFLHKELPIRIARRAIELETLPYGLSEKPAVLKVRDWYLDSFRDLRS-FPDIRSTSDERDFTQMIKAIKVRHNNVVPMM 128 (368)
Q Consensus 50 ~~~~~~~l~~rv~~r~~~l~~~~~~l~~~~~i~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~i 128 (368)
.+.++.+|+.||++||++|...+..+.. +|..- .+....++. ..++-+.-+...+.+|...++||+++||..+
T Consensus 329 ~~~a~~eLE~rV~eRTadL~~~n~~l~~--EIaer----~~ae~~LR~~QdeLvQA~kLA~LGQmSA~iaHElNQPLaai 402 (603)
T COG4191 329 LQEARAELERRVEERTADLTRANARLQA--EIAER----EQAEAALRRAQDELVQAGKLAALGQMSAGIAHELNQPLAAI 402 (603)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHH--HHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 3567889999999999999988776666 44321 222222222 2334445555667888888889999998888
Q ss_pred HHHHHHHhcccCccccccChHHHHHHHHHHHHhhHHHHHhHHHHhhhcCCCCCCCcccccccCCCHHHHHHHHHHHHHHH
Q 017673 129 ALGLQQLKKEMDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIGQHVELHNPNPPPHCIGYIDTKMSPVQVARNASEHARCV 208 (368)
Q Consensus 129 ~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~li~~~l~l~~~~~~~~~~~~~~~~~~l~~li~~~~~~~~~~ 208 (368)
......-..-+. ....++....+..+..=..+|-.|..++..|++... .. ..++.+.+.|++++..+...
T Consensus 403 Rt~adna~~lLe----rgr~e~a~~Nl~~I~~LteRma~It~~Lk~FArk~~--~a----~~~v~l~~ai~~Al~ll~~R 472 (603)
T COG4191 403 RTYADNARLLLE----RGRTEEARENLERISALTERMAAITAHLKSFARKSR--DA----AGPVSLREAIEGALELLRGR 472 (603)
T ss_pred HhHHHHHHHHHH----cCChHHHHhHHHHHHHHHHHHHHHHHHHHHHhccCc--cc----cCCccHHHHHHHHHHHHHHh
Confidence 866643333333 122344455555544445557778999999998733 22 25899999999999998887
Q ss_pred HHhhhCCCCceEEEcCC-CceeeccchhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEEEEeCCCeEEEEEeeeCCCC
Q 017673 209 CLREYGSAPDFNIYGDP-SFTFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGI 287 (368)
Q Consensus 209 ~~~~~~~~~~i~~~~~~-~~~~~~d~~~l~~vl~nLl~NAi~~~~~~~~~~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi 287 (368)
+... ...+.+..++ +++|.+++.+|+||+.|||+||++++.... .+.|.|.+..+++.+.|+|+||||||
T Consensus 473 ~~~~---~~~l~~~~~~~~~~V~~~~iRLeQVLvNLl~NALDA~~~~~------~~~i~i~~~~~~~~v~l~VrDnGpGi 543 (603)
T COG4191 473 LRAA---GVELELDLPDAPLWVMANEIRLEQVLVNLLQNALDAMAGQE------DRRLSIRAQREGGQVVLTVRDNGPGI 543 (603)
T ss_pred hhcc---CceeeccCCCCCceeecchhhHHHHHHHHHHHHHHHhcCCC------CCeeEEEEEecCCeEEEEEccCCCCC
Confidence 7765 6666666554 678999999999999999999999997521 58899999999999999999999999
Q ss_pred CCCCcccccccccccCCCCCCcccccccCCCCCCccccChHHHHHHHHHhCCeEEEEecCCCceEEEEEeCCC
Q 017673 288 PRSGLPKIFTYLYSTARNPLDENTDLAADKGTMAGYGYGLPISRLYARYFGGDLQIISMEGYGTDAYLHLSRL 360 (368)
Q Consensus 288 ~~~~~~~if~~f~~~~~~~~~~~~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~i~v~s~~g~Gt~f~i~lP~~ 360 (368)
+++.++++|+||||+|+. .+|.||||+||+.|++.+||+|.+.|.++.|+.|+|.||+.
T Consensus 544 ~~e~~~~lFePF~TtK~~--------------~~GLGLGLaIS~~i~~d~GGsL~v~n~~~~Ga~F~i~L~~a 602 (603)
T COG4191 544 APEALPHLFEPFFTTKPV--------------GKGLGLGLAISQNIARDLGGSLEVANHPEGGASFTIELRRA 602 (603)
T ss_pred CHHHHHhhcCCccccCcc--------------cCCcchhHHHHHHHHHHhCCeEEeecCCCCceEEEEEeecC
Confidence 999999999999999966 56999999999999999999999999988999999999975
No 5
>PRK09303 adaptive-response sensory kinase; Validated
Probab=100.00 E-value=2.7e-33 Score=266.04 Aligned_cols=229 Identities=16% Similarity=0.186 Sum_probs=190.2
Q ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHhcccCccccccChHHHHHHHHHHHHhhHHHHHhHHHHhhhcCCCCCCCcccc
Q 017673 108 RDFTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIGQHVELHNPNPPPHCIGY 187 (368)
Q Consensus 108 ~~~~~~l~~~~~~~~~~l~~i~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~li~~~l~l~~~~~~~~~~~~ 187 (368)
+....+++.++||++|||+.+...+..+.............+...++++.+......+..++++++.+++. ......+
T Consensus 149 ~~~~~l~~~iaHeLrtPLt~i~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~ll~~~~~--~~~~~~~ 226 (380)
T PRK09303 149 KFKDRVLAMLAHDLRTPLTAASLALETLELGQIDEDTELKPALIEQLQDQARRQLEEIERLITDLLEVGRT--RWEALRF 226 (380)
T ss_pred HHHHHHHHHHhHhhcchHHHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hcCCcee
Confidence 34577999999999999999997777666443311112233457777787777888888999999999998 5555556
Q ss_pred cccCCCHHHHHHHHHHHHHHHHHhhhCCCCceEEEcCCCc-eeeccchhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEE
Q 017673 188 IDTKMSPVQVARNASEHARCVCLREYGSAPDFNIYGDPSF-TFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIR 266 (368)
Q Consensus 188 ~~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~d~~~l~~vl~nLl~NAi~~~~~~~~~~~~~~~~I~ 266 (368)
....+++.+++.+++..+...+..+ .+.+.++.+.+. .+.+|+..|.+|+.||++||++|++. ++.|.
T Consensus 227 ~~~~~~l~~ll~~~~~~~~~~~~~~---~i~l~~~~~~~~~~v~~d~~~l~qvl~NLl~NAik~~~~--------~~~I~ 295 (380)
T PRK09303 227 NPQKLDLGSLCQEVILELEKRWLAK---SLEIQTDIPSDLPSVYADQERIRQVLLNLLDNAIKYTPE--------GGTIT 295 (380)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHc---CCEEEEEcCCCCCeEEeCHHHHHHHHHHHHHHHHhcCCC--------CceEE
Confidence 6789999999999999998887776 777777765554 58999999999999999999999877 68899
Q ss_pred EEEEe-CCCeEEEEEeeeCCCCCCCCcccccccccccCCCCCCcccccccCCCCCCccccChHHHHHHHHHhCCeEEEEe
Q 017673 267 IIVAD-GLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAADKGTMAGYGYGLPISRLYARYFGGDLQIIS 345 (368)
Q Consensus 267 i~~~~-~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~i~v~s 345 (368)
|.+.. .++++.|.|.|+|+|||++.++++|+|||+++.. ....|+||||+||+.+++.|||+|++.|
T Consensus 296 i~~~~~~~~~v~i~V~D~G~GI~~~~~~~iF~pf~~~~~~------------~~~~G~GLGL~i~~~iv~~~gG~i~v~s 363 (380)
T PRK09303 296 LSMLHRTTQKVQVSICDTGPGIPEEEQERIFEDRVRLPRD------------EGTEGYGIGLSVCRRIVRVHYGQIWVDS 363 (380)
T ss_pred EEEEecCCCEEEEEEEEcCCCCCHHHHHHHccCceeCCCC------------CCCCcccccHHHHHHHHHHcCCEEEEEe
Confidence 98754 5677999999999999999999999999988743 2246999999999999999999999999
Q ss_pred cCCCceEEEEEeCCCC
Q 017673 346 MEGYGTDAYLHLSRLG 361 (368)
Q Consensus 346 ~~g~Gt~f~i~lP~~~ 361 (368)
.+|+||+|+|+||...
T Consensus 364 ~~~~Gt~f~i~lP~~~ 379 (380)
T PRK09303 364 EPGQGSCFHFTLPVYR 379 (380)
T ss_pred cCCCccEEEEEEecCC
Confidence 9999999999999753
No 6
>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional
Probab=100.00 E-value=7e-32 Score=277.46 Aligned_cols=221 Identities=16% Similarity=0.139 Sum_probs=187.2
Q ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHhcccCccccccChHHHHHHHHHHHHhhHHHHHhHHHHhhhcCCCCCCCcccc
Q 017673 108 RDFTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIGQHVELHNPNPPPHCIGY 187 (368)
Q Consensus 108 ~~~~~~l~~~~~~~~~~l~~i~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~li~~~l~l~~~~~~~~~~~~ 187 (368)
+...++++.++||+|+||+.|.+.+..+..... .+...++++.+..+..++..++++++++++. +.+....
T Consensus 448 ~~k~~fla~iSHELRtPL~aI~g~~elL~~~~~-------~~~~~~~l~~I~~~~~~L~~lI~dILdlsrl--e~~~~~l 518 (894)
T PRK10618 448 QARKAFLQNIGDELKQPLQSLAQLAAQLRQTSD-------EEQQQPELDQLAEQSDVLVRLVDNIQLLNML--ETQDWKP 518 (894)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHhCCCC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hcCCCcc
Confidence 445789999999999999999977766654322 3566788888888888899999999999998 5566666
Q ss_pred cccCCCHHHHHHHHHHHHHHHHHhhhCCCCceEEEcC--CCceeeccchhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCE
Q 017673 188 IDTKMSPVQVARNASEHARCVCLREYGSAPDFNIYGD--PSFTFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPI 265 (368)
Q Consensus 188 ~~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~~d~~~l~~vl~nLl~NAi~~~~~~~~~~~~~~~~I 265 (368)
..+++++.+++++++..+...+..+ ++.+.+..+ .+..+.+|+..|.||+.||++||++|++. |.|
T Consensus 519 ~~~~~~L~~ll~~vl~~~~~~a~~k---~i~l~~~~~~~~~~~v~~D~~~L~QVL~NLL~NAik~t~~---------G~I 586 (894)
T PRK10618 519 EQELFSLQDLIDEVLPEVLPAIKRK---GLQLLIHNHLKAEQLRIGDRDALRKILLLLLNYAITTTAY---------GKI 586 (894)
T ss_pred cceeECHHHHHHHHHHHHHHHHHHC---CCEEEEEeCCCCCcEEEecHHHHHHHHHHHHHHHHHhCCC---------CeE
Confidence 7789999999999999999888876 666666543 44568899999999999999999999854 678
Q ss_pred EEEEEeC---CCeEEEEEeeeCCCCCCCCcccccccccccCCCCCCcccccccCCCCCCccccChHHHHHHHHHhCCeEE
Q 017673 266 RIIVADG---LEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAADKGTMAGYGYGLPISRLYARYFGGDLQ 342 (368)
Q Consensus 266 ~i~~~~~---~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~i~ 342 (368)
.|.+... ++.+.|+|+|+|+|||++.+++||+|||+++.. .+..+|+||||+|||++++.|||+|+
T Consensus 587 ~I~v~~~~~~~~~l~I~V~DtG~GI~~e~l~~IFePF~t~~~~-----------~~~~~GtGLGLaI~k~Lve~~GG~I~ 655 (894)
T PRK10618 587 TLEVDQDESSPDRLTIRILDTGAGVSIKELDNLHFPFLNQTQG-----------DRYGKASGLTFFLCNQLCRKLGGHLT 655 (894)
T ss_pred EEEEEEccCCCcEEEEEEEECCCCCCHHHHHHhcCccccCCCC-----------CCCCCCcChhHHHHHHHHHHcCCEEE
Confidence 8888643 367999999999999999999999999987643 23346999999999999999999999
Q ss_pred EEecCCCceEEEEEeCCC
Q 017673 343 IISMEGYGTDAYLHLSRL 360 (368)
Q Consensus 343 v~s~~g~Gt~f~i~lP~~ 360 (368)
++|.+|+||+|+|+||..
T Consensus 656 v~S~~g~GT~F~I~LPl~ 673 (894)
T PRK10618 656 IKSREGLGTRYSIHLKML 673 (894)
T ss_pred EEECCCCcEEEEEEEEcc
Confidence 999999999999999985
No 7
>PRK11006 phoR phosphate regulon sensor protein; Provisional
Probab=100.00 E-value=2.1e-31 Score=257.56 Aligned_cols=223 Identities=16% Similarity=0.149 Sum_probs=182.7
Q ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHhcccCccccccChHHHHHHHHHHHHhhHHHHHhHHHHhhhcCCCCCCCcccc
Q 017673 108 RDFTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIGQHVELHNPNPPPHCIGY 187 (368)
Q Consensus 108 ~~~~~~l~~~~~~~~~~l~~i~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~li~~~l~l~~~~~~~~~~~~ 187 (368)
+...++++.++||++|||+.+.+.+..+..... ..+....+++.+.....++..++++++++++.. ......
T Consensus 202 ~~~~~~~~~isHelrtPL~~i~~~~~~l~~~~~------~~~~~~~~l~~i~~~~~~l~~li~~ll~~~r~~--~~~~~~ 273 (430)
T PRK11006 202 GARRNFFANVSHELRTPLTVLQGYLEMMQDQPL------EGALREKALHTMREQTQRMEGLVKQLLTLSKIE--AAPTID 273 (430)
T ss_pred HHHHHHHHHhHHHhcchHHHHHHHHHHHhcCCC------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCCcc
Confidence 345679999999999999999966665543322 234566778887788888999999999999873 333333
Q ss_pred cccCCCHHHHHHHHHHHHHHHHHhhhCCCCceEEEcCCCceeeccchhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEE
Q 017673 188 IDTKMSPVQVARNASEHARCVCLREYGSAPDFNIYGDPSFTFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRI 267 (368)
Q Consensus 188 ~~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~d~~~l~~vl~nLl~NAi~~~~~~~~~~~~~~~~I~i 267 (368)
....+++..+++.+...+.... . ..+.+.+..+....+.+|+..|.+++.||++||++|+++ ++.|.|
T Consensus 274 ~~~~~~~~~~~~~l~~~~~~~~-~---~~~~i~~~~~~~~~i~~d~~~l~~vl~NLl~NAik~~~~--------~~~I~i 341 (430)
T PRK11006 274 LNEKVDVPMMLRVLEREAQTLS-Q---GKHTITFEVDNSLKVFGNEDQLRSAISNLVYNAVNHTPE--------GTHITV 341 (430)
T ss_pred cCCccCHHHHHHHHHHHHHHHh-c---CCcEEEEecCCCceEEECHHHHHHHHHHHHHHHHhcCCC--------CCeEEE
Confidence 3567888888887766655443 2 356777777777789999999999999999999999876 578999
Q ss_pred EEEeCCCeEEEEEeeeCCCCCCCCcccccccccccCCCCCCcccccccCCCCCCccccChHHHHHHHHHhCCeEEEEecC
Q 017673 268 IVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAADKGTMAGYGYGLPISRLYARYFGGDLQIISME 347 (368)
Q Consensus 268 ~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~i~v~s~~ 347 (368)
++...++.+.|+|.|+|+|||++.++++|+|||+++.. .....+|+||||+|||.+++.|||+|+++|.+
T Consensus 342 ~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~----------~~~~~~G~GLGL~ivk~iv~~~gG~i~i~s~~ 411 (430)
T PRK11006 342 RWQRVPQGAEFSVEDNGPGIAPEHIPRLTERFYRVDKA----------RSRQTGGSGLGLAIVKHALSHHDSRLEIESEV 411 (430)
T ss_pred EEEEcCCEEEEEEEEcCCCCCHHHHHHhccCcccccCC----------CCCCCCCCchHHHHHHHHHHHCCCEEEEEecC
Confidence 99888889999999999999999999999999988754 23344699999999999999999999999999
Q ss_pred CCceEEEEEeCCC
Q 017673 348 GYGTDAYLHLSRL 360 (368)
Q Consensus 348 g~Gt~f~i~lP~~ 360 (368)
|.||+|+|.||..
T Consensus 412 ~~Gt~f~i~lP~~ 424 (430)
T PRK11006 412 GKGTRFSFVLPER 424 (430)
T ss_pred CCceEEEEEechH
Confidence 9999999999975
No 8
>PRK15347 two component system sensor kinase SsrA; Provisional
Probab=99.97 E-value=3.1e-30 Score=271.91 Aligned_cols=217 Identities=17% Similarity=0.209 Sum_probs=186.9
Q ss_pred HHHHHHHHHHhccCchHHHHHHHHHHhcccCccccccChHHHHHHHHHHHHhhHHHHHhHHHHhhhcCCCCCCCcccccc
Q 017673 110 FTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIGQHVELHNPNPPPHCIGYID 189 (368)
Q Consensus 110 ~~~~l~~~~~~~~~~l~~i~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~li~~~l~l~~~~~~~~~~~~~~ 189 (368)
...++..++||+|+||+.+.+.++.+..... .....++++.+.....++..++++++++++. +.+...+..
T Consensus 398 ~~~~~~~isHelrtPL~~i~~~~~~l~~~~~-------~~~~~~~~~~i~~~~~~l~~li~~ll~~~~~--~~~~~~~~~ 468 (921)
T PRK15347 398 KSEHLTTISHEIRTPLNGVLGALELLQNTPL-------TAEQMDLADTARQCTLSLLAIINNLLDFSRI--ESGQMTLSL 468 (921)
T ss_pred HHHHHHHhHHHhchhHHHHHHHHHHHhcCCC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hcCCcccee
Confidence 4568899999999999999977666654322 3455678888888888899999999999998 556667777
Q ss_pred cCCCHHHHHHHHHHHHHHHHHhhhCCCCceEEEcCCC--ceeeccchhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEE
Q 017673 190 TKMSPVQVARNASEHARCVCLREYGSAPDFNIYGDPS--FTFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRI 267 (368)
Q Consensus 190 ~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~d~~~l~~vl~nLl~NAi~~~~~~~~~~~~~~~~I~i 267 (368)
+.+++.+++++++..+...+..+ .+.+.+..++. ..+.+|+.+|.|++.||+.||++|++. |.|.|
T Consensus 469 ~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~d~~~l~~il~NLl~NAik~~~~---------g~I~i 536 (921)
T PRK15347 469 EETALLPLLDQAMLTIQGPAQSK---SLTLRTFVGAHVPLYLHLDSLRLRQILVNLLGNAVKFTET---------GGIRL 536 (921)
T ss_pred cccCHHHHHHHHHHHHHHHHHHC---CcEEEEEECCCCCceEEECHHHHHHHHHHHHHHHhhcCCC---------CCEEE
Confidence 89999999999999988877766 66666655443 468899999999999999999999855 67999
Q ss_pred EEEeCCCeEEEEEeeeCCCCCCCCcccccccccccCCCCCCcccccccCCCCCCccccChHHHHHHHHHhCCeEEEEecC
Q 017673 268 IVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAADKGTMAGYGYGLPISRLYARYFGGDLQIISME 347 (368)
Q Consensus 268 ~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~i~v~s~~ 347 (368)
++...++.+.|+|+|+|+|||++.++++|+|||+++.. .+|+||||+||+++++.|||+|+++|.+
T Consensus 537 ~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~--------------~~g~GLGL~i~~~~~~~~gG~i~i~s~~ 602 (921)
T PRK15347 537 RVKRHEQQLCFTVEDTGCGIDIQQQQQIFTPFYQADTH--------------SQGTGLGLTIASSLAKMMGGELTLFSTP 602 (921)
T ss_pred EEEEcCCEEEEEEEEcCCCCCHHHHHHHhcCcccCCCC--------------CCCCchHHHHHHHHHHHcCCEEEEEecC
Confidence 99999999999999999999999999999999987754 4699999999999999999999999999
Q ss_pred CCceEEEEEeCCCC
Q 017673 348 GYGTDAYLHLSRLG 361 (368)
Q Consensus 348 g~Gt~f~i~lP~~~ 361 (368)
|.||+|++.||...
T Consensus 603 ~~Gt~f~i~lp~~~ 616 (921)
T PRK15347 603 GVGSCFSLVLPLNE 616 (921)
T ss_pred CCceEEEEEEECCC
Confidence 99999999999753
No 9
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional
Probab=99.97 E-value=1.9e-30 Score=270.12 Aligned_cols=221 Identities=14% Similarity=0.233 Sum_probs=188.2
Q ss_pred HHHHHHHHHHHhccCchHHHHHHHHHHhcccCccccccChHHHHHHHHHHHHhhHHHHHhHHHHhhhcCCCCCCCccccc
Q 017673 109 DFTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIGQHVELHNPNPPPHCIGYI 188 (368)
Q Consensus 109 ~~~~~l~~~~~~~~~~l~~i~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~li~~~l~l~~~~~~~~~~~~~ 188 (368)
....++..++||+|+||+.|.+.+..+..... .++..++++.+..+...+..+|++++++++. +.+...+.
T Consensus 446 ~k~~fla~iSHELRTPL~~I~g~lelL~~~~~-------~~~~~~~l~~i~~~~~~L~~lI~dlLd~sri--e~~~~~l~ 516 (924)
T PRK10841 446 SKSMFLATVSHELRTPLYGIIGNLDLLQTKEL-------PKGVDRLVTAMNNSSSLLLKIISDILDFSKI--ESEQLKIE 516 (924)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHhCCCC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCCceee
Confidence 34569999999999999999966665543322 4566788888888888899999999999998 55666666
Q ss_pred ccCCCHHHHHHHHHHHHHHHHHhhhCCCCceEEEcCCC--ceeeccchhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEE
Q 017673 189 DTKMSPVQVARNASEHARCVCLREYGSAPDFNIYGDPS--FTFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIR 266 (368)
Q Consensus 189 ~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~d~~~l~~vl~nLl~NAi~~~~~~~~~~~~~~~~I~ 266 (368)
..++++.+++++++..+...+..+ .+.+.+..+++ ..+.+|+..|.||+.||++||+||++. +.|.
T Consensus 517 ~~~~~l~~li~~v~~~~~~~~~~k---~i~l~~~i~~~~~~~v~~D~~~L~qvl~NLl~NAik~t~~---------G~I~ 584 (924)
T PRK10841 517 PREFSPREVINHITANYLPLVVKK---RLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDT---------GCIV 584 (924)
T ss_pred eEEecHHHHHHHHHHHHHHHHHHc---CcEEEEEeCCCCCcEEEECHHHHHHHHHHHHHHHHhhCCC---------CcEE
Confidence 788999999999999998877776 66766655443 458999999999999999999999855 6799
Q ss_pred EEEEeCCCeEEEEEeeeCCCCCCCCcccccccccccCCCCCCcccccccCCCCCCccccChHHHHHHHHHhCCeEEEEec
Q 017673 267 IIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAADKGTMAGYGYGLPISRLYARYFGGDLQIISM 346 (368)
Q Consensus 267 i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~i~v~s~ 346 (368)
|.+...++.+.|+|.|+|+||+++.++++|+|||+.+.. .....+|+||||+||+++++.|||+|+++|.
T Consensus 585 I~v~~~~~~l~i~V~DtG~GI~~e~~~~lFepF~~~~~~----------~~~~~~GtGLGL~I~k~lv~~~gG~I~v~S~ 654 (924)
T PRK10841 585 LHVRVDGDYLSFRVRDTGVGIPAKEVVRLFDPFFQVGTG----------VQRNFQGTGLGLAICEKLINMMDGDISVDSE 654 (924)
T ss_pred EEEEEeCCEEEEEEEEcCcCCCHHHHHHHhcccccCCCC----------CCCCCCCeehhHHHHHHHHHHCCCEEEEEEc
Confidence 998888889999999999999999999999999987654 2334569999999999999999999999999
Q ss_pred CCCceEEEEEeCCC
Q 017673 347 EGYGTDAYLHLSRL 360 (368)
Q Consensus 347 ~g~Gt~f~i~lP~~ 360 (368)
+|.||+|+|.||..
T Consensus 655 ~g~Gt~F~i~LP~~ 668 (924)
T PRK10841 655 PGMGSQFTIRIPLY 668 (924)
T ss_pred CCCcEEEEEEEECC
Confidence 99999999999975
No 10
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=99.97 E-value=1.9e-30 Score=268.54 Aligned_cols=222 Identities=18% Similarity=0.231 Sum_probs=186.5
Q ss_pred HHHHHHHHHHhccCchHHHHHHHHHHhcccCccccccChHHHHHHHHHHHHhhHHHHHhHHHHhhhcCCCCCCCcccccc
Q 017673 110 FTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIGQHVELHNPNPPPHCIGYID 189 (368)
Q Consensus 110 ~~~~l~~~~~~~~~~l~~i~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~li~~~l~l~~~~~~~~~~~~~~ 189 (368)
...+++.++||+++||+.|.+.+..+.... ..++..++++.+..+..++..++++++++++. +.+...+..
T Consensus 283 ~~~~~a~isHelrtPL~~I~g~~~ll~~~~-------~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~--~~~~~~~~~ 353 (779)
T PRK11091 283 KTTFISTISHELRTPLNGIVGLSRILLDTE-------LTAEQRKYLKTIHVSAITLGNIFNDIIDMDKM--ERRKLQLDN 353 (779)
T ss_pred HHHHHHHhhHhhcCcHHHHHHHHHHHhcCC-------CCHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH--hCCCcEEEe
Confidence 467889999999999999985555443322 23456778888888888899999999999998 556667778
Q ss_pred cCCCHHHHHHHHHHHHHHHHHhhhCCCCceEEEcCCCc--eeeccchhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEE
Q 017673 190 TKMSPVQVARNASEHARCVCLREYGSAPDFNIYGDPSF--TFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRI 267 (368)
Q Consensus 190 ~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~d~~~l~~vl~nLl~NAi~~~~~~~~~~~~~~~~I~i 267 (368)
.++++.++++++...+...+..+ ++.+.+..+.+. .+.+|+..|.||+.||++||++|++. +.|.|
T Consensus 354 ~~~~l~~~i~~~~~~~~~~~~~~---~i~~~~~~~~~~~~~v~~d~~~l~qvl~NLl~NAik~~~~---------g~v~i 421 (779)
T PRK11091 354 QPIDFTDFLADLENLSGLQAEQK---GLRFDLEPLLPLPHKVITDGTRLRQILWNLISNAVKFTQQ---------GGVTV 421 (779)
T ss_pred eccCHHHHHHHHHHHHHHHHHhc---CCEEEEEeCCCCCceEEeCHHHHHHHHHHHHHHHHHhCCC---------CcEEE
Confidence 89999999999999988887776 677777655443 48899999999999999999999854 77888
Q ss_pred EEEeC-CCeEEEEEeeeCCCCCCCCcccccccccccCCCCCCcccccccCCCCCCccccChHHHHHHHHHhCCeEEEEec
Q 017673 268 IVADG-LEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAADKGTMAGYGYGLPISRLYARYFGGDLQIISM 346 (368)
Q Consensus 268 ~~~~~-~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~i~v~s~ 346 (368)
.+... ++.+.|+|+|+|+|||++.++++|+|||+++... ..+...|+||||+|||.+++.|||+|++.|.
T Consensus 422 ~~~~~~~~~~~i~V~D~G~Gi~~~~~~~iF~~f~~~~~~~---------~~~~~~GtGLGL~i~~~iv~~~gG~i~v~s~ 492 (779)
T PRK11091 422 RVRYEEGDMLTFEVEDSGIGIPEDELDKIFAMYYQVKDSH---------GGKPATGTGIGLAVSKRLAQAMGGDITVTSE 492 (779)
T ss_pred EEEEccCCEEEEEEEecCCCCCHHHHHHHHHHhhcccCCC---------CCCCCCCcchHHHHHHHHHHHcCCEEEEEec
Confidence 88766 7789999999999999999999999999995320 2233579999999999999999999999999
Q ss_pred CCCceEEEEEeCCCC
Q 017673 347 EGYGTDAYLHLSRLG 361 (368)
Q Consensus 347 ~g~Gt~f~i~lP~~~ 361 (368)
+|.||+|+|.||...
T Consensus 493 ~g~Gt~f~i~lP~~~ 507 (779)
T PRK11091 493 EGKGSCFTLTIHAPA 507 (779)
T ss_pred CCCeEEEEEEEeccc
Confidence 999999999999764
No 11
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).
Probab=99.97 E-value=4.7e-30 Score=271.79 Aligned_cols=221 Identities=13% Similarity=0.141 Sum_probs=190.3
Q ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHhcccCccccccChHHHHHHHHHHHHhhHHHHHhHHHHhhhcCCCCCCCcccc
Q 017673 108 RDFTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIGQHVELHNPNPPPHCIGY 187 (368)
Q Consensus 108 ~~~~~~l~~~~~~~~~~l~~i~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~li~~~l~l~~~~~~~~~~~~ 187 (368)
+....++..++||+|+||+.|.+.+..+..... .+...++++.+..+..++..++++++++++. +.+...+
T Consensus 462 ~~~~~~~~~~sHelrtPL~~i~~~~~ll~~~~~-------~~~~~~~l~~i~~~~~~l~~~i~~ll~~~~~--e~~~~~~ 532 (968)
T TIGR02956 462 RAKSAFLATMSHEIRTPLNGILGTLELLGDTGL-------TSQQQQYLQVINRSGESLLDILNDILDYSKI--EAGHLSI 532 (968)
T ss_pred HHHHHHHHHhHHHhhhHHHHHHHHHHHHhCCCC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hcCCCee
Confidence 445779999999999999999976665543322 3566788888888889999999999999998 5566677
Q ss_pred cccCCCHHHHHHHHHHHHHHHHHhhhCCCCceEEEcCC--CceeeccchhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCE
Q 017673 188 IDTKMSPVQVARNASEHARCVCLREYGSAPDFNIYGDP--SFTFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPI 265 (368)
Q Consensus 188 ~~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~d~~~l~~vl~nLl~NAi~~~~~~~~~~~~~~~~I 265 (368)
...++++.+++++++..+...+..+ ++.+.+..++ +..+.+|+.+|.+|+.|||+||++|++. |.|
T Consensus 533 ~~~~~~l~~ll~~~~~~~~~~~~~~---~i~~~~~~~~~~~~~~~~d~~~l~~il~nLi~NAik~~~~---------g~i 600 (968)
T TIGR02956 533 SPRPFDLNALLDDVHHLMVSRAQLK---GIQLRLNIPEQLPNWWQGDGPRIRQVLINLVGNAIKFTDR---------GSV 600 (968)
T ss_pred eecccCHHHHHHHHHHHHHHHHHHc---CcEEEEEeCCCCCceEeeCHHHHHHHHHHHHHHHHhhCCC---------CeE
Confidence 7889999999999999999888877 6777777553 3458899999999999999999999855 789
Q ss_pred EEEEEeCCCe-EEEEEeeeCCCCCCCCcccccccccccCCCCCCcccccccCCCCCCccccChHHHHHHHHHhCCeEEEE
Q 017673 266 RIIVADGLED-VTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAADKGTMAGYGYGLPISRLYARYFGGDLQII 344 (368)
Q Consensus 266 ~i~~~~~~~~-~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~i~v~ 344 (368)
.|.+...++. +.|.|+|+|+|||++.++++|+|||+++.. +..+|+||||+|||.+++.|||+|+++
T Consensus 601 ~i~~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~------------~~~~g~GLGL~i~~~l~~~~gG~i~~~ 668 (968)
T TIGR02956 601 VLRVSLNDDSSLLFEVEDTGCGIAEEEQATLFDAFTQADGR------------RRSGGTGLGLAISQRLVEAMDGELGVE 668 (968)
T ss_pred EEEEEEcCCCeEEEEEEeCCCCCCHHHHHHHHhhhhccCCC------------CCCCCccHHHHHHHHHHHHcCCEEEEE
Confidence 9998877777 999999999999999999999999998733 334699999999999999999999999
Q ss_pred ecCCCceEEEEEeCCCC
Q 017673 345 SMEGYGTDAYLHLSRLG 361 (368)
Q Consensus 345 s~~g~Gt~f~i~lP~~~ 361 (368)
|.+|+||+|++.||...
T Consensus 669 s~~~~Gt~f~~~lp~~~ 685 (968)
T TIGR02956 669 SELGVGSCFWFTLPLTR 685 (968)
T ss_pred ecCCCcEEEEEEEEcCC
Confidence 99999999999999764
No 12
>COG3852 NtrB Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms]
Probab=99.97 E-value=4.5e-30 Score=222.78 Aligned_cols=216 Identities=18% Similarity=0.206 Sum_probs=173.7
Q ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHhcccCccccccChHHHHHHHHHHHHhhHHHHHhHHHHhhhcCCCCCCCcccc
Q 017673 108 RDFTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIGQHVELHNPNPPPHCIGY 187 (368)
Q Consensus 108 ~~~~~~l~~~~~~~~~~l~~i~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~li~~~l~l~~~~~~~~~~~~ 187 (368)
.....+++.++||++|||+.|.++++-|...+. .+....+..-+..+..+++.||+.+.-++... +..
T Consensus 130 ~a~~~L~r~LAHEIKNPL~GiRGAAQLLe~~lp-------d~~~~~lt~lIieE~DRl~~LVDRme~~~~~r--p~~--- 197 (363)
T COG3852 130 RAVKGLVRGLAHEIKNPLGGIRGAAQLLERALP-------DEALRELTQLIIEEADRLRNLVDRLEVLGPQR--PGD--- 197 (363)
T ss_pred HHHHHHHHHHHHHhcCcccchhhHHHHHHhhCC-------ChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC--Ccc---
Confidence 345668899999999999999977788877776 33467777778888999999999997776552 211
Q ss_pred cccCCCHHHHHHHHHHHHHHHHHhhhCCCCceEEEcCCCce-eeccchhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEE
Q 017673 188 IDTKMSPVQVARNASEHARCVCLREYGSAPDFNIYGDPSFT-FPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIR 266 (368)
Q Consensus 188 ~~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~d~~~l~~vl~nLl~NAi~~~~~~~~~~~~~~~~I~ 266 (368)
..++++.++++.+...+. ..++..+.+.-+.|+.++ +.+|++.|.|++.||++||+++...+ .+ .+|.|.
T Consensus 198 -r~~~NIH~VLerV~~lv~----~e~~~~i~l~rdYDPSLP~v~~d~DqliQv~LNlVrNAaqA~~~~-~~---~~g~I~ 268 (363)
T COG3852 198 -RVPVNIHEVLERVRALVE----AEFADNVRLIRDYDPSLPEVLGDRDQLIQVFLNLVRNAAQALGGR-AD---EGGEII 268 (363)
T ss_pred -cccchHHHHHHHHHHHHh----cccCCceEEeecCCCCCccccCCHHHHHHHHHHHHHHHHHHhcCC-CC---CCceEE
Confidence 236788777666655544 444556788888888877 99999999999999999999998641 11 147888
Q ss_pred EEEEe------CCC----eEEEEEeeeCCCCCCCCcccccccccccCCCCCCcccccccCCCCCCccccChHHHHHHHHH
Q 017673 267 IIVAD------GLE----DVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAADKGTMAGYGYGLPISRLYARY 336 (368)
Q Consensus 267 i~~~~------~~~----~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~~~~~~~~~~~g~GlGL~i~k~iv~~ 336 (368)
++.+. .+. .+.+.|.|||||+|++.++++|.||.+++.. |+||||+++++++..
T Consensus 269 LrTR~~~q~~i~g~r~rl~l~leViDNGPGVP~~L~~~lF~P~Vs~r~~----------------GsGLGLala~~li~q 332 (363)
T COG3852 269 LRTRTGIQLTIAGTRYRLALPLEVIDNGPGVPPDLQDHLFYPMVSGREG----------------GTGLGLALAQNLIDQ 332 (363)
T ss_pred EEeccceEEEccCceeEeeeeeEEecCCCCCChHHhhhccccccccCCC----------------CccccHHHHHHHHHh
Confidence 77732 111 2567899999999999999999999999977 999999999999999
Q ss_pred hCCeEEEEecCCCceEEEEEeCCCC
Q 017673 337 FGGDLQIISMEGYGTDAYLHLSRLG 361 (368)
Q Consensus 337 ~gG~i~v~s~~g~Gt~f~i~lP~~~ 361 (368)
|||.|+++|.|| .|+|+|.+|...
T Consensus 333 H~G~Ie~~S~Pg-~T~FrvllP~~~ 356 (363)
T COG3852 333 HGGKIEFDSWPG-RTVFRVLLPIRK 356 (363)
T ss_pred cCCEEEEeccCC-ceEEEEEeeccc
Confidence 999999999998 799999999765
No 13
>PRK10815 sensor protein PhoQ; Provisional
Probab=99.97 E-value=2.7e-29 Score=245.39 Aligned_cols=239 Identities=14% Similarity=0.122 Sum_probs=184.0
Q ss_pred hhHHHHHHHHHHHHHHhhcCCCCCCchhHHHHHHHHHHHHHhccCchHHHHHHHHHHhcccCccccccChHHHHHHHHHH
Q 017673 79 PAVLKVRDWYLDSFRDLRSFPDIRSTSDERDFTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDRF 158 (368)
Q Consensus 79 ~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~ 158 (368)
.++..+.+.++...++.+ +..++..++++.++||+||||+.+.+.+..+..... ...++ ....+
T Consensus 243 ~El~~L~~~ln~~l~~~~--------~~~~~~~~~l~~isHELRTPLt~I~~~l~~L~~~~~-----~~~~~---~~~~~ 306 (485)
T PRK10815 243 RELTSLVRNLNRLLKNER--------ERYTKYRTTLTDLTHSLKTPLAVLQSTLRSLRSGKQ-----MSVEQ---AEPIM 306 (485)
T ss_pred HHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCC-----CCHHH---HHHHH
Confidence 345555555555444322 122344668999999999999999977776754432 01111 11222
Q ss_pred HHhhHHHHHhHHHHhhhcCCCCCCCcccccccCCCHHHHHHHHHHHHHHHHHhhhCCCCceEEEcCCCceeeccchhHHH
Q 017673 159 YMSRIGIRMLIGQHVELHNPNPPPHCIGYIDTKMSPVQVARNASEHARCVCLREYGSAPDFNIYGDPSFTFPYVPSHLHL 238 (368)
Q Consensus 159 ~~~~~~~~~li~~~l~l~~~~~~~~~~~~~~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~d~~~l~~ 238 (368)
.....++..++++++..++. ..+......+.+++..++++++..+...+..+ ++.+.++.+++..+.+|+..+.+
T Consensus 307 ~~~i~ri~~~i~~ll~~~~~--~~~~~~~~~~~~~l~~ll~~~~~~l~~~~~~~---~i~i~~~~~~~~~v~~d~~~l~~ 381 (485)
T PRK10815 307 LEQISRISQQIGYYLHRASM--RSEHNLLSRELHSVAPLLDNLTSALNKVYQRK---GVNITLDISPEITFVGEKNDFME 381 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHh--hcCCcccccceecHHHHHHHHHHHHHHHHHHC---CcEEEEecCCCcEEEeCHHHHHH
Confidence 23334455677888888776 33444455678899999999999998877776 67788777777788899999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCCCEEEEEEeCCCeEEEEEeeeCCCCCCCCcccccccccccCCCCCCcccccccCCC
Q 017673 239 MVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAADKG 318 (368)
Q Consensus 239 vl~nLl~NAi~~~~~~~~~~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~~~~~~~~ 318 (368)
++.||++||++|++ +.|.|++...++.+.|.|+|+|+|||++.++++|+|||+.+..
T Consensus 382 vl~NLi~NAik~~~----------~~i~I~~~~~~~~v~I~V~D~G~GI~~e~~~~iF~~f~~~~~~------------- 438 (485)
T PRK10815 382 VMGNVLDNACKYCL----------EFVEISARQTDEHLHIVVEDDGPGIPESKRELIFDRGQRADTL------------- 438 (485)
T ss_pred HHHHHHHHHHHhcC----------CcEEEEEEEeCCEEEEEEEECCCCcCHHHHHHHhCCcccCCCC-------------
Confidence 99999999999984 3688888888899999999999999999999999999987654
Q ss_pred CCCccccChHHHHHHHHHhCCeEEEEecCCCceEEEEEeCCCCC
Q 017673 319 TMAGYGYGLPISRLYARYFGGDLQIISMEGYGTDAYLHLSRLGD 362 (368)
Q Consensus 319 ~~~g~GlGL~i~k~iv~~~gG~i~v~s~~g~Gt~f~i~lP~~~~ 362 (368)
.+|+||||+||+++++.|||++.+.|.+++||+|+|.||+...
T Consensus 439 -~~G~GLGL~Ivk~iv~~~gG~i~v~s~~~~Gt~f~i~lp~~~~ 481 (485)
T PRK10815 439 -RPGQGLGLSVAREITEQYEGKISAGDSPLGGARMEVIFGRQHS 481 (485)
T ss_pred -CCCcchhHHHHHHHHHHcCCEEEEEECCCCEEEEEEEEcCCCC
Confidence 3599999999999999999999999999999999999998743
No 14
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=99.97 E-value=5.4e-30 Score=269.76 Aligned_cols=220 Identities=17% Similarity=0.172 Sum_probs=186.2
Q ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHhcccCccccccChHHHHHHHHHHHHhhHHHHHhHHHHhhhcCCCCCCCcccc
Q 017673 108 RDFTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIGQHVELHNPNPPPHCIGY 187 (368)
Q Consensus 108 ~~~~~~l~~~~~~~~~~l~~i~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~li~~~l~l~~~~~~~~~~~~ 187 (368)
+....++..++||+++||+.+.+.+..+..... .+...+++..+.....++..++++++++++.......+.+
T Consensus 442 ~~~~~~l~~isHelrtPL~~i~~~~~ll~~~~~-------~~~~~~~l~~i~~~~~~l~~li~~ll~~s~~~~~~~~~~~ 514 (914)
T PRK11466 442 QAKSAFLAAMSHEIRTPLYGILGTAQLLADNPA-------LNAQRDDLRAITDSGESLLTILNDILDYSAIEAGGKNVSV 514 (914)
T ss_pred HHHHHHHHHhHHHHhhHHHHHHHHHHHHhCCCC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccee
Confidence 345679999999999999999866655543222 3466778888888888899999999999987433334556
Q ss_pred cccCCCHHHHHHHHHHHHHHHHHhhhCCCCceEEEcCCC--ceeeccchhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCE
Q 017673 188 IDTKMSPVQVARNASEHARCVCLREYGSAPDFNIYGDPS--FTFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPI 265 (368)
Q Consensus 188 ~~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~d~~~l~~vl~nLl~NAi~~~~~~~~~~~~~~~~I 265 (368)
..+++++.+++++++..+...+..+ ++.+.++.++. ..+.+|+..|.+|+.||+.||++|++. |.|
T Consensus 515 ~~~~~~l~~ll~~~~~~~~~~~~~~---~i~~~~~~~~~~~~~v~~d~~~l~qil~NLl~NAik~~~~---------g~I 582 (914)
T PRK11466 515 SDEPFEPRPLLESTLQLMSGRVKGR---PIRLATDIADDLPTALMGDPRRIRQVITNLLSNALRFTDE---------GSI 582 (914)
T ss_pred cccccCHHHHHHHHHHHHHHHHHhC---CcEEEEEeCCCCCceEEECHHHHHHHHHHHHHHHHHhCCC---------CeE
Confidence 6789999999999999999887776 67777665543 458899999999999999999999754 789
Q ss_pred EEEEEeCCCeEEEEEeeeCCCCCCCCcccccccccccCCCCCCcccccccCCCCCCccccChHHHHHHHHHhCCeEEEEe
Q 017673 266 RIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAADKGTMAGYGYGLPISRLYARYFGGDLQIIS 345 (368)
Q Consensus 266 ~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~i~v~s 345 (368)
.|.+..+++.+.|.|.|+|+|||++.++++|+|||+.... .+|+||||+||+.+++.|||+|++.|
T Consensus 583 ~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~--------------~~g~GLGL~i~~~l~~~~gG~i~v~s 648 (914)
T PRK11466 583 VLRSRTDGEQWLVEVEDSGCGIDPAKLAEIFQPFVQVSGK--------------RGGTGLGLTISSRLAQAMGGELSATS 648 (914)
T ss_pred EEEEEEcCCEEEEEEEECCCCCCHHHHHHHhchhhcCCCC--------------CCCCcccHHHHHHHHHHcCCEEEEEe
Confidence 9999888899999999999999999999999999986544 46999999999999999999999999
Q ss_pred cCCCceEEEEEeCCC
Q 017673 346 MEGYGTDAYLHLSRL 360 (368)
Q Consensus 346 ~~g~Gt~f~i~lP~~ 360 (368)
.+|.||+|++.||..
T Consensus 649 ~~~~Gt~f~i~lP~~ 663 (914)
T PRK11466 649 TPEVGSCFCLRLPLR 663 (914)
T ss_pred cCCCCeEEEEEEEcc
Confidence 999999999999975
No 15
>PRK10604 sensor protein RstB; Provisional
Probab=99.97 E-value=6.4e-29 Score=240.26 Aligned_cols=242 Identities=13% Similarity=0.094 Sum_probs=186.5
Q ss_pred cCChhHHHHHHHHHHHHHHhhcCCCCCCchhHHHHHHHHHHHHHhccCchHHHHHHHHHHhcccCccccccChHHHHHHH
Q 017673 76 SEKPAVLKVRDWYLDSFRDLRSFPDIRSTSDERDFTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFL 155 (368)
Q Consensus 76 ~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~~~~~l~~~~~~~~~~~~~~~~~~~l 155 (368)
....++..+...++.+.+++... .+...+++..++||+++||+.+...+..+. ... .++...
T Consensus 186 ~~~~el~~L~~~fn~m~~~l~~~--------~~~~~~l~~~vsHeLrtPL~~i~~~l~~l~-~~~-------~~~~~~-- 247 (433)
T PRK10604 186 DEGSSLERLGVAFNQMADNINAL--------IASKKQLIDGIAHELRTPLVRLRYRLEMSD-NLS-------AAESQA-- 247 (433)
T ss_pred CCccHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHhhHhhcChHHHHHHHHHHhc-CCC-------cHHHHH--
Confidence 34457777887787777766542 122345889999999999999986555444 222 111111
Q ss_pred HHHHHhhHHHHHhHHHHhhhcCCCCCCCcccccccCCCHHHHHHHHHHHHHHHHHhhhCCCCceEEEcCCCceeeccchh
Q 017673 156 DRFYMSRIGIRMLIGQHVELHNPNPPPHCIGYIDTKMSPVQVARNASEHARCVCLREYGSAPDFNIYGDPSFTFPYVPSH 235 (368)
Q Consensus 156 ~~~~~~~~~~~~li~~~l~l~~~~~~~~~~~~~~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~d~~~ 235 (368)
+......+..++++++.+++. +........+.+++.+++++++..+....... .+.+.+.. ....+.+|+..
T Consensus 248 --i~~~~~~l~~li~~ll~~~rl--~~~~~~~~~~~~~l~~~l~~~i~~~~~~~~~~---~i~~~~~~-~~~~~~~d~~~ 319 (433)
T PRK10604 248 --LNRDIGQLEALIEELLTYARL--DRPQNELHLSEPDLPAWLSTHLADIQAVTPEK---TVRLDTPH-QGDYGALDMRL 319 (433)
T ss_pred --HHHHHHHHHHHHHHHHHHHhc--cCCCcccCCCCCCHHHHHHHHHHHHHHHhhcC---cEEEEecC-CCceEecCHHH
Confidence 233445577899999999998 44445556679999999999998887655443 33443332 23456789999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEEEEeCCCeEEEEEeeeCCCCCCCCcccccccccccCCCCCCccccccc
Q 017673 236 LHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAA 315 (368)
Q Consensus 236 l~~vl~nLl~NAi~~~~~~~~~~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~~~~~ 315 (368)
+.+++.||++||++|+ ++.|.|++..+++.+.|.|.|+|+|||++.++++|+|||+.+..
T Consensus 320 l~~vl~NLl~NAik~~----------~~~I~I~~~~~~~~~~I~V~D~G~Gi~~e~~~~if~~f~r~~~~---------- 379 (433)
T PRK10604 320 MERVLDNLLNNALRYA----------HSRVRVSLLLDGNQACLIVEDDGPGIPPEERERVFEPFVRLDPS---------- 379 (433)
T ss_pred HHHHHHHHHHHHHHhC----------CCeEEEEEEEECCEEEEEEEEcCCCCCHHHHhhcCCCCccCCCC----------
Confidence 9999999999999996 36899999888999999999999999999999999999998755
Q ss_pred CCCCCCccccChHHHHHHHHHhCCeEEEEecCCCceEEEEEeCCCCCC
Q 017673 316 DKGTMAGYGYGLPISRLYARYFGGDLQIISMEGYGTDAYLHLSRLGDS 363 (368)
Q Consensus 316 ~~~~~~g~GlGL~i~k~iv~~~gG~i~v~s~~g~Gt~f~i~lP~~~~~ 363 (368)
..+..+|+|+||++|+++++.|||++++++.+++||+|++.||.....
T Consensus 380 ~~~~~~g~GLGL~ivk~i~~~~gG~i~v~s~~~~G~~f~i~lP~~~~~ 427 (433)
T PRK10604 380 RDRATGGCGLGLAIVHSIALAMGGSVNCDESELGGARFSFSWPVWHNL 427 (433)
T ss_pred CCCCCCCccchHHHHHHHHHHCCCEEEEEecCCCeeEEEEEEeCCCCC
Confidence 333456899999999999999999999999999999999999987544
No 16
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=99.97 E-value=9.5e-30 Score=268.14 Aligned_cols=220 Identities=15% Similarity=0.178 Sum_probs=182.7
Q ss_pred HHHHHHHHHHhccCchHHHHHHHHHHhcccCccccccChHHHHHHHHHHHHhhHHHHHhHHHHhhhcCCCCCCCcccccc
Q 017673 110 FTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIGQHVELHNPNPPPHCIGYID 189 (368)
Q Consensus 110 ~~~~l~~~~~~~~~~l~~i~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~li~~~l~l~~~~~~~~~~~~~~ 189 (368)
..+++..++||+|+||+.+.+.+..+..... .+...++++.+..+...+..++++++++++. +.+...+..
T Consensus 293 ~~~~l~~isHelrtPL~~i~~~~~~l~~~~~-------~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~--~~~~~~~~~ 363 (919)
T PRK11107 293 KSEFLANMSHELRTPLNGVIGFTRQTLKTPL-------TPTQRDYLQTIERSANNLLAIINDILDFSKL--EAGKLVLEN 363 (919)
T ss_pred HHHHHHHhhHhhcccHHHHHHHHHHHhcCCC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hcCCcEEEE
Confidence 4679999999999999999866655543222 3456778888888888899999999999998 556666677
Q ss_pred cCCCHHHHHHHHHHHHHHHHHhhhCCCCceEEEcCCCc--eeeccchhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEE
Q 017673 190 TKMSPVQVARNASEHARCVCLREYGSAPDFNIYGDPSF--TFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRI 267 (368)
Q Consensus 190 ~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~d~~~l~~vl~nLl~NAi~~~~~~~~~~~~~~~~I~i 267 (368)
.++++.+++++++..+...+..+ ++.+.+..++.. .+.+|+.+|.||+.||++||++|++. |.|.|
T Consensus 364 ~~~~l~~~l~~~~~~~~~~~~~~---~i~~~~~~~~~~~~~~~~d~~~l~~vl~NLl~NAik~~~~---------g~v~i 431 (919)
T PRK11107 364 IPFSLRETLDEVVTLLAHSAHEK---GLELTLNIDPDVPDNVIGDPLRLQQIITNLVGNAIKFTES---------GNIDI 431 (919)
T ss_pred eecCHHHHHHHHHHHHHHHHHHc---CCEEEEEeCCCCCceEEeCHHHHHHHHHHHHHHHhhcCCC---------CcEEE
Confidence 89999999999999999888776 677777665543 47899999999999999999999865 55655
Q ss_pred EEE--eC---CCeEEEEEeeeCCCCCCCCcccccccccccCCCCCCcccccccCCCCCCccccChHHHHHHHHHhCCeEE
Q 017673 268 IVA--DG---LEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAADKGTMAGYGYGLPISRLYARYFGGDLQ 342 (368)
Q Consensus 268 ~~~--~~---~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~i~ 342 (368)
.+. .. ...+.|.|.|+|+|||++.++++|+|||+.+.. ..+..+|+||||+||+++++.|||+|+
T Consensus 432 ~v~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~----------~~~~~~g~GLGL~i~~~i~~~~gG~i~ 501 (919)
T PRK11107 432 LVELRALSNTKVQLEVQIRDTGIGISERQQSQLFQAFRQADAS----------ISRRHGGTGLGLVITQKLVNEMGGDIS 501 (919)
T ss_pred EEEEEecCCCeeEEEEEEEEeCCCcCHHHHHHHhhhhccCCCC----------CCCCCCCcchhHHHHHHHHHHhCCEEE
Confidence 553 22 225889999999999999999999999987655 334457999999999999999999999
Q ss_pred EEecCCCceEEEEEeCCC
Q 017673 343 IISMEGYGTDAYLHLSRL 360 (368)
Q Consensus 343 v~s~~g~Gt~f~i~lP~~ 360 (368)
+.|.+|.||+|++.||..
T Consensus 502 v~s~~~~Gt~f~i~lp~~ 519 (919)
T PRK11107 502 FHSQPNRGSTFWFHLPLD 519 (919)
T ss_pred EEecCCCCEEEEEEEEec
Confidence 999999999999999975
No 17
>TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL. NifL is a modulator of the nitrogen fixation positive regulator protein NifA, and is therefore a negative regulator. It binds NifA. NifA and NifL are encoded by adjacent genes.
Probab=99.97 E-value=1.2e-29 Score=248.78 Aligned_cols=220 Identities=14% Similarity=0.139 Sum_probs=163.7
Q ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHhcccCccccccChHHHHHHHHHHHHhhHHHHHhHHHHhhhcCCCCCCCcccc
Q 017673 108 RDFTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIGQHVELHNPNPPPHCIGY 187 (368)
Q Consensus 108 ~~~~~~l~~~~~~~~~~l~~i~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~li~~~l~l~~~~~~~~~~~~ 187 (368)
+.+.+++..+.|++++||+.|.+.+..+..... ..........+....... ..++..+..+.... ...
T Consensus 274 ~~l~~~~~~~~h~lr~pL~~i~~~~~~l~~~~~----~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~-----~~~ 341 (494)
T TIGR02938 274 EAIRETLSAAIHRLQGPMNLISAAISVLQRRGD----DAGNPASAAMLQQALSAG---REHMEALRQVIPQS-----PQE 341 (494)
T ss_pred HHHHHHHHHHHHHHhcHHHHHHHHHHHHHhccc----cccCHHHHHHHHHHHHHH---HHHHHHHHHhhccC-----ccc
Confidence 445667788889999999999877665554322 011123333333322222 22333333332211 112
Q ss_pred cccCCCHHHHHHHHHHHHHHHHHhhhCCCCceEEEcCCCc-eeeccchhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEE
Q 017673 188 IDTKMSPVQVARNASEHARCVCLREYGSAPDFNIYGDPSF-TFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIR 266 (368)
Q Consensus 188 ~~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~d~~~l~~vl~nLl~NAi~~~~~~~~~~~~~~~~I~ 266 (368)
...++++..++++++..+...+..+ ++.+.+..+... .+.+|+..|.+|+.||+.||+||++..... .+.|.
T Consensus 342 ~~~~~dl~~~~~~~~~~~~~~~~~~---~i~~~~~~~~~~~~v~~d~~~l~~vl~Nl~~NAik~~~~~~~~----~~~i~ 414 (494)
T TIGR02938 342 IVVPVNLNQILRDVITLSTPRLLAA---GIVVDWQPAATLPAILGRELQLRSLFKALVDNAIEAMNIKGWK----RRELS 414 (494)
T ss_pred ccccccHHHHHHHHHHHhHHHHHhC---CCEEEEecCCCCCeeecCHHHHHHHHHHHHHHHHHHhhccCCC----cceEE
Confidence 2358999999999998887766665 677777765544 488999999999999999999999773100 14588
Q ss_pred EEEEeCCCeEEEEEeeeCCCCCCCCcccccccccccCCCCCCcccccccCCCCCCccccChHHHHHHHHHhCCeEEEEec
Q 017673 267 IIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAADKGTMAGYGYGLPISRLYARYFGGDLQIISM 346 (368)
Q Consensus 267 i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~i~v~s~ 346 (368)
|.+...++.+.|+|+|+|+|||++.+++||+|||+++.. ..+|+||||+|||.+++.|||+|+++|.
T Consensus 415 i~~~~~~~~~~~~V~D~G~Gi~~~~~~~iF~~f~~~~~~-------------~~~G~GlGL~i~~~iv~~~gG~i~~~s~ 481 (494)
T TIGR02938 415 ITTALNGDLIVVSILDSGPGIPQDLRYKVFEPFFTTKGG-------------SRKHIGMGLSVAQEIVADHGGIIDLDDD 481 (494)
T ss_pred EEEEecCCEEEEEEEeCCCCCCHHHHHHhcCCCcccCCC-------------CCCCCcccHHHHHHHHHHcCCEEEEEEC
Confidence 888888999999999999999999999999999998854 1469999999999999999999999999
Q ss_pred CCCceEEEEEeCC
Q 017673 347 EGYGTDAYLHLSR 359 (368)
Q Consensus 347 ~g~Gt~f~i~lP~ 359 (368)
+|.||+|+|+||.
T Consensus 482 ~~~G~~f~i~lp~ 494 (494)
T TIGR02938 482 YSEGCRIIVEFRV 494 (494)
T ss_pred CCCCEEEEEEecC
Confidence 9999999999994
No 18
>PRK10549 signal transduction histidine-protein kinase BaeS; Provisional
Probab=99.97 E-value=1.3e-28 Score=240.55 Aligned_cols=249 Identities=15% Similarity=0.141 Sum_probs=200.5
Q ss_pred cCChhHHHHHHHHHHHHHHhhcCCCCCCchhHHHHHHHHHHHHHhccCchHHHHHHHHHHhcccCccccccChHHHHHHH
Q 017673 76 SEKPAVLKVRDWYLDSFRDLRSFPDIRSTSDERDFTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFL 155 (368)
Q Consensus 76 ~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~~~~~l~~~~~~~~~~~~~~~~~~~l 155 (368)
....++..+...++.+.++++.. .+...+++..+.|++++||..+...+..+..... ... .+.+
T Consensus 214 ~~~dE~~~l~~~~n~m~~~l~~~--------~~~~~~~~~~~shel~~pL~~i~~~~~~l~~~~~----~~~----~~~l 277 (466)
T PRK10549 214 TSRDELGRLAQDFNQLASTLEKN--------EQMRRDFMADISHELRTPLAVLRGELEAIQDGVR----KFT----PESV 277 (466)
T ss_pred CChhHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHhHHhCChHHHHHHHHHHHHhccc----cCC----HHHH
Confidence 34568888888888887777532 2234568899999999999999877776654433 011 2233
Q ss_pred HHHHHhhHHHHHhHHHHhhhcCCCCCCCcccccccCCCHHHHHHHHHHHHHHHHHhhhCCCCceEEEcCCCceeeccchh
Q 017673 156 DRFYMSRIGIRMLIGQHVELHNPNPPPHCIGYIDTKMSPVQVARNASEHARCVCLREYGSAPDFNIYGDPSFTFPYVPSH 235 (368)
Q Consensus 156 ~~~~~~~~~~~~li~~~l~l~~~~~~~~~~~~~~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~d~~~ 235 (368)
..+......+..+++++..+++. ..+...+....+++.++++.++..+...+..+ .+.+.+.+++...+.+|+..
T Consensus 278 ~~~~~~~~~l~~li~~l~~l~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~---~i~i~~~~~~~~~~~~d~~~ 352 (466)
T PRK10549 278 ASLQAEVGTLTKLVDDLHQLSLS--DEGALAYRKTPVDLVPLLEVAGGAFRERFASR---GLTLQLSLPDSATVFGDPDR 352 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh--cCCCcccccCCCCHHHHHHHHHHHHHHHHHHC---CcEEEEecCCCcEEEeCHHH
Confidence 34444445566788888888776 44556666789999999999999988777665 67888887777888899999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEEEEeCCCeEEEEEeeeCCCCCCCCcccccccccccCCCCCCccccccc
Q 017673 236 LHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAA 315 (368)
Q Consensus 236 l~~vl~nLl~NAi~~~~~~~~~~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~~~~~ 315 (368)
+.|++.||+.||++|+++ ++.|.|.+...++.+.|.|.|+|+|||++.++++|+|||+++..
T Consensus 353 l~qvl~nll~NAi~~~~~--------~~~I~i~~~~~~~~~~i~V~D~G~Gi~~e~~~~lf~~~~~~~~~---------- 414 (466)
T PRK10549 353 LMQLFNNLLENSLRYTDS--------GGSLHISAEQRDKTLRLTFADSAPGVSDEQLQKLFERFYRTEGS---------- 414 (466)
T ss_pred HHHHHHHHHHHHHHhCCC--------CCEEEEEEEEcCCEEEEEEEecCCCcCHHHHHHhccCcccCCCC----------
Confidence 999999999999999866 58999999999999999999999999999999999999998754
Q ss_pred CCCCCCccccChHHHHHHHHHhCCeEEEEecCCCceEEEEEeCCCCCC
Q 017673 316 DKGTMAGYGYGLPISRLYARYFGGDLQIISMEGYGTDAYLHLSRLGDS 363 (368)
Q Consensus 316 ~~~~~~g~GlGL~i~k~iv~~~gG~i~v~s~~g~Gt~f~i~lP~~~~~ 363 (368)
..+..+|+|+||++|+++++.|||+++++|.+++||+|+|.||.....
T Consensus 415 ~~~~~~g~GlGL~iv~~i~~~~~G~l~~~s~~~~G~~~~i~lP~~~~~ 462 (466)
T PRK10549 415 RNRASGGSGLGLAICLNIVEAHNGRIIAAHSPFGGVSITVELPLERDL 462 (466)
T ss_pred cCCCCCCCcHHHHHHHHHHHHcCCEEEEEECCCCeEEEEEEccCCCCC
Confidence 233456899999999999999999999999999999999999987543
No 19
>PRK10490 sensor protein KdpD; Provisional
Probab=99.97 E-value=2e-29 Score=261.47 Aligned_cols=221 Identities=13% Similarity=0.116 Sum_probs=179.6
Q ss_pred HHHHHHHHHHHhccCchHHHHHHHHHHhcccCccccccChHHHHHHHHHHHHhhHHHHHhHHHHhhhcCCCCCCCccccc
Q 017673 109 DFTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIGQHVELHNPNPPPHCIGYI 188 (368)
Q Consensus 109 ~~~~~l~~~~~~~~~~l~~i~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~li~~~l~l~~~~~~~~~~~~~ 188 (368)
....+++.++||++|||+.|.+.+..+...+. .........++.+.....++..++++++++++. ..+...+.
T Consensus 663 lr~~lla~isHELrtPLt~I~g~~~lL~~~l~-----~~~~~~~~~~~~i~~~~~~l~~li~~LL~~srl--~~~~~~l~ 735 (895)
T PRK10490 663 LRNALLAALSHDLRTPLTVLFGQAEILTLDLA-----SEGSPHARQASEIRQQVLNTTRLVNNLLDMARI--QSGGFNLR 735 (895)
T ss_pred HHHHHHHHhHHHHhHHHHHHHHHHHHHhhccc-----ccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hcCCCccc
Confidence 34679999999999999999865554443332 111222344555556666677799999999998 55666667
Q ss_pred ccCCCHHHHHHHHHHHHHHHHHhhhCCCCceEEEcCCCc-eeeccchhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEE
Q 017673 189 DTKMSPVQVARNASEHARCVCLREYGSAPDFNIYGDPSF-TFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRI 267 (368)
Q Consensus 189 ~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~d~~~l~~vl~nLl~NAi~~~~~~~~~~~~~~~~I~i 267 (368)
..++++.+++++++..+...+... .+.++.+.+. .+.+|+..|.||+.||++||++|+++ ++.|.|
T Consensus 736 ~~~~~L~eli~~~l~~l~~~~~~~-----~i~l~~~~~~~~v~~D~~~L~qVL~NLL~NAik~s~~--------g~~I~I 802 (895)
T PRK10490 736 KEWLTLEEVVGSALQMLEPGLSGH-----PINLSLPEPLTLIHVDGPLFERVLINLLENAVKYAGA--------QAEIGI 802 (895)
T ss_pred ccccCHHHHHHHHHHHHHHHhcCC-----CEEEEcCCCCeEEEECHHHHHHHHHHHHHHHHHhCCC--------CCeEEE
Confidence 789999999999998887655443 5555555554 58999999999999999999999876 578999
Q ss_pred EEEeCCCeEEEEEeeeCCCCCCCCcccccccccccCCCCCCcccccccCCCCCCccccChHHHHHHHHHhCCeEEEEecC
Q 017673 268 IVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAADKGTMAGYGYGLPISRLYARYFGGDLQIISME 347 (368)
Q Consensus 268 ~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~i~v~s~~ 347 (368)
.+...++.+.|.|.|+|+|||++.++++|++||+++.. +...|+||||+|||.+++.|||+|+++|.+
T Consensus 803 ~~~~~~~~v~I~V~D~G~GI~~e~~~~IFepF~~~~~~------------~~~~G~GLGL~Ivk~ive~hGG~I~v~s~~ 870 (895)
T PRK10490 803 DAHVEGERLQLDVWDNGPGIPPGQEQLIFDKFARGNKE------------SAIPGVGLGLAICRAIVEVHGGTIWAENRP 870 (895)
T ss_pred EEEEeCCEEEEEEEECCCCCCHHHHHHhcCCCccCCCC------------CCCCCccHHHHHHHHHHHHcCCEEEEEECC
Confidence 99989999999999999999999999999999987643 224599999999999999999999999999
Q ss_pred CCceEEEEEeCCCC
Q 017673 348 GYGTDAYLHLSRLG 361 (368)
Q Consensus 348 g~Gt~f~i~lP~~~ 361 (368)
++||+|+|.||...
T Consensus 871 ~~Gt~f~i~LPl~~ 884 (895)
T PRK10490 871 EGGACFRVTLPLET 884 (895)
T ss_pred CCeEEEEEEeECCC
Confidence 99999999999863
No 20
>PRK10364 sensor protein ZraS; Provisional
Probab=99.97 E-value=5e-29 Score=242.89 Aligned_cols=216 Identities=18% Similarity=0.221 Sum_probs=179.6
Q ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHhcccCccccccChHHHHHHHHHHHHhhHHHHHhHHHHhhhcCCCCCCCcccc
Q 017673 108 RDFTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIGQHVELHNPNPPPHCIGY 187 (368)
Q Consensus 108 ~~~~~~l~~~~~~~~~~l~~i~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~li~~~l~l~~~~~~~~~~~~ 187 (368)
....++...++|+++|||+.+.+.++.+..... ..++..++++.+.....++..++++++.+++. .. .
T Consensus 235 ~~~~~~~~~laHelrtpL~~i~~~~~~l~~~~~------~~~~~~~~~~~i~~~~~~l~~~i~~ll~~~~~--~~----~ 302 (457)
T PRK10364 235 VALGHLAAGVAHEIRNPLSSIKGLAKYFAERAP------AGGEAHQLAQVMAKEADRLNRVVSELLELVKP--TH----L 302 (457)
T ss_pred HHHHHHHHHhhHHhccHHHHHHHHHHHHHhhcc------CchHHHHHHHHHHHHHHHHHHHHHHHHHHhCc--CC----C
Confidence 344568888999999999999966665554333 12344566666666777788899999999875 22 2
Q ss_pred cccCCCHHHHHHHHHHHHHHHHHhhhCCCCceEEEcCCC-ceeeccchhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEE
Q 017673 188 IDTKMSPVQVARNASEHARCVCLREYGSAPDFNIYGDPS-FTFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIR 266 (368)
Q Consensus 188 ~~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~d~~~l~~vl~nLl~NAi~~~~~~~~~~~~~~~~I~ 266 (368)
...++++.++++.++..+...+..+ ++.+.++.+.. ..+.+|+..|.+++.||++||++|+.. ++.|.
T Consensus 303 ~~~~~~l~~~l~~~~~~~~~~~~~~---~i~l~~~~~~~~~~~~~d~~~l~~il~NLl~NA~k~~~~--------~~~I~ 371 (457)
T PRK10364 303 ALQAVDLNDLINHSLQLVSQDANSR---EIQLRFTANDTLPEIQADPDRLTQVLLNLYLNAIQAIGQ--------HGVIS 371 (457)
T ss_pred cceEecHHHHHHHHHHHHHHHHHhc---CeEEEEEcCCCCceEEECHHHHHHHHHHHHHHHHHhcCC--------CCeEE
Confidence 2357899999999999988877776 77777776553 357899999999999999999999865 57899
Q ss_pred EEEEeCCCeEEEEEeeeCCCCCCCCcccccccccccCCCCCCcccccccCCCCCCccccChHHHHHHHHHhCCeEEEEec
Q 017673 267 IIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAADKGTMAGYGYGLPISRLYARYFGGDLQIISM 346 (368)
Q Consensus 267 i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~i~v~s~ 346 (368)
|++..+++.+.|.|.|+|+|||++.++++|++||+++.. |+|+||++|+++++.|||++++.|.
T Consensus 372 i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~~~~~k~~----------------g~GlGL~iv~~~v~~~gG~i~i~s~ 435 (457)
T PRK10364 372 VTASESGAGVKISVTDSGKGIAADQLEAIFTPYFTTKAE----------------GTGLGLAVVHNIVEQHGGTIQVASQ 435 (457)
T ss_pred EEEEEeCCeEEEEEEECCCCCCHHHHHHHhCccccCCCC----------------CCcccHHHHHHHHHHCCCEEEEEeC
Confidence 999988889999999999999999999999999988755 9999999999999999999999999
Q ss_pred CCCceEEEEEeCCCCC
Q 017673 347 EGYGTDAYLHLSRLGD 362 (368)
Q Consensus 347 ~g~Gt~f~i~lP~~~~ 362 (368)
+|+||+|+|.||....
T Consensus 436 ~~~Gt~f~i~lP~~~~ 451 (457)
T PRK10364 436 EGKGATFTLWLPVNIT 451 (457)
T ss_pred CCCcEEEEEEecCCCc
Confidence 9999999999998643
No 21
>PRK10755 sensor protein BasS/PmrB; Provisional
Probab=99.97 E-value=1.6e-28 Score=231.69 Aligned_cols=238 Identities=16% Similarity=0.150 Sum_probs=180.5
Q ss_pred ChhHHHHHHHHHHHHHHhhcCCCCCCchhHHHHHHHHHHHHHhccCchHHHHHHHHHHhcccCccccccChHHHHHHHHH
Q 017673 78 KPAVLKVRDWYLDSFRDLRSFPDIRSTSDERDFTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDR 157 (368)
Q Consensus 78 ~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~~~~~l~~~~~~~~~~~~~~~~~~~l~~ 157 (368)
.+++..+...++++.+++.... +....++..++|++++||+.+...+..+..... .......+
T Consensus 113 ~~E~~~l~~~~n~~~~~l~~~~--------~~~~~~~~~~sHelrtPL~~i~~~~e~l~~~~~--------~~~~~~~~- 175 (356)
T PRK10755 113 TLEIEAVTSALNQLVSRLTSTL--------DQERLFTADVAHELRTPLAGIRLHLELLEKQHH--------IDVAPLIA- 175 (356)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHhhHhhcChHHHHHHHHHHHHhccc--------hhHHHHHH-
Confidence 3567777777777666665421 112348889999999999999866654442222 11222222
Q ss_pred HHHhhHHHHHhHHHHhhhcCCCCCCCcccccccCCCH-HHHHHHHHHHHHHHHHhhhCCCCceEEE-cCCCceeeccchh
Q 017673 158 FYMSRIGIRMLIGQHVELHNPNPPPHCIGYIDTKMSP-VQVARNASEHARCVCLREYGSAPDFNIY-GDPSFTFPYVPSH 235 (368)
Q Consensus 158 ~~~~~~~~~~li~~~l~l~~~~~~~~~~~~~~~~~~l-~~li~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~~d~~~ 235 (368)
...++..++++++.+++.. ..........+++ .+++..++..+...+..+ .+.+.+. .+.+..+.+|+..
T Consensus 176 ---~~~~l~~~i~~ll~~~r~~--~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~---~~~~~~~~~~~~~~v~~d~~~ 247 (356)
T PRK10755 176 ---RLDQMMHTVEQLLQLARAG--QSFSSGHYQTVKLLEDVILPSQDELSEMLEQR---QQTLLLPESAADITVQGDATL 247 (356)
T ss_pred ---HHHHHHHHHHHHHHHHHcc--cccccccchhhhHHHHHHHHHHHHHHHHHHHh---CCeEEeccCCCceEEEECHHH
Confidence 2223555788888888862 2222233456777 888888887787777666 6666664 3455678999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEEEEeCCCeEEEEEeeeCCCCCCCCcccccccccccCCCCCCccccccc
Q 017673 236 LHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAA 315 (368)
Q Consensus 236 l~~vl~nLl~NAi~~~~~~~~~~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~~~~~ 315 (368)
+.+++.||++||++|++. ++.|.|.+..+++.+.|.|.|+|+||+++.++++|++||+.+..
T Consensus 248 l~~il~nLi~NA~k~~~~--------~~~I~I~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~---------- 309 (356)
T PRK10755 248 LRLLLRNLVENAHRYSPE--------GSTITIKLSQEDGGAVLAVEDEGPGIDESKCGELSKAFVRMDSR---------- 309 (356)
T ss_pred HHHHHHHHHHHHHhhCCC--------CCcEEEEEEEcCCEEEEEEEECCCCCCHHHHHHhCCCeEeCCCC----------
Confidence 999999999999999866 57899999989999999999999999999999999999976543
Q ss_pred CCCCCCccccChHHHHHHHHHhCCeEEEEecCC-CceEEEEEeCCCCC
Q 017673 316 DKGTMAGYGYGLPISRLYARYFGGDLQIISMEG-YGTDAYLHLSRLGD 362 (368)
Q Consensus 316 ~~~~~~g~GlGL~i~k~iv~~~gG~i~v~s~~g-~Gt~f~i~lP~~~~ 362 (368)
.+|+|+||++|+++++.|||+++++|.++ .||+|++.||....
T Consensus 310 ----~~g~GlGL~i~~~i~~~~gg~i~i~s~~~~~Gt~~~i~~p~~~~ 353 (356)
T PRK10755 310 ----YGGIGLGLSIVSRITQLHHGQFFLQNRQERSGTRAWVWLPKAQN 353 (356)
T ss_pred ----CCCcCHHHHHHHHHHHHCCCEEEEEECCCCCeEEEEEEecCCCc
Confidence 46999999999999999999999999987 89999999998654
No 22
>PRK13837 two-component VirA-like sensor kinase; Provisional
Probab=99.96 E-value=7.9e-29 Score=257.19 Aligned_cols=216 Identities=18% Similarity=0.243 Sum_probs=178.8
Q ss_pred hHHHHHHHHHHHHHhccCchHHHHHHHHHHhcccCccccccChHHHHHHHHHHHHhhHHHHHhHHHHhhhcCCCCCCCcc
Q 017673 106 DERDFTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIGQHVELHNPNPPPHCI 185 (368)
Q Consensus 106 ~~~~~~~~l~~~~~~~~~~l~~i~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~li~~~l~l~~~~~~~~~~ 185 (368)
+.+.+..++..++||+++||+.|.+.+..+..... ......++++.+..+..++..++++++++++.. ..
T Consensus 446 rl~~l~~~~~~iaHeLrtPL~~I~~~~~~l~~~~~------~~~~~~~~l~~i~~~~~rl~~li~~ll~~sr~~--~~-- 515 (828)
T PRK13837 446 RLEAVGTLASGIAHNFNNILGAILGYAEMALNKLA------RHSRAARYIDEIISAGARARLIIDQILAFGRKG--ER-- 515 (828)
T ss_pred HHHHHHHHHHHhhHHhhhHHHHHHHHHHHHHhhcc------CChHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--CC--
Confidence 33456789999999999999999866655444333 234677888888888888999999999999862 22
Q ss_pred cccccCCCHHHHHHHHHHHHHHHHHhhhCCCCceEEEcCC-CceeeccchhHHHHHHHHHHHHHHHHHHhhcCCCCCCCC
Q 017673 186 GYIDTKMSPVQVARNASEHARCVCLREYGSAPDFNIYGDP-SFTFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPP 264 (368)
Q Consensus 186 ~~~~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~d~~~l~~vl~nLl~NAi~~~~~~~~~~~~~~~~ 264 (368)
..+++++.+++++++..+..... ..+.+.+..+. ...+.+|+..|.+++.||++||++|++. +++
T Consensus 516 --~~~~~~l~~ll~~~~~~~~~~~~----~~i~l~~~~~~~~~~v~~d~~~L~qvl~NLl~NAik~~~~--------~g~ 581 (828)
T PRK13837 516 --NTKPFDLSELVTEIAPLLRVSLP----PGVELDFDQDQEPAVVEGNPAELQQVLMNLCSNAAQAMDG--------AGR 581 (828)
T ss_pred --CCcEEcHHHHHHHHHHHHHHHcc----CCcEEEEEeCCCCceEEECHHHHHHHHHHHHHHHHHHccc--------CCe
Confidence 23589999999999887764332 25566666544 4568999999999999999999999976 588
Q ss_pred EEEEEEeC---------------CCeEEEEEeeeCCCCCCCCcccccccccccCCCCCCcccccccCCCCCCccccChHH
Q 017673 265 IRIIVADG---------------LEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAADKGTMAGYGYGLPI 329 (368)
Q Consensus 265 I~i~~~~~---------------~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~~~~~~~~~~~g~GlGL~i 329 (368)
|.|++... ++++.|.|+|+|+|||++.++++|+|||+++.. |+|+||++
T Consensus 582 I~I~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~GI~~e~~~~iFe~F~~~~~~----------------G~GLGL~i 645 (828)
T PRK13837 582 VDISLSRAKLRAPKVLSHGVLPPGRYVLLRVSDTGAGIDEAVLPHIFEPFFTTRAG----------------GTGLGLAT 645 (828)
T ss_pred EEEEEEEeecccccccccccCCCCCEEEEEEEECCCCCCHHHHHHhhCCcccCCCC----------------CCcchHHH
Confidence 98888765 778999999999999999999999999988754 99999999
Q ss_pred HHHHHHHhCCeEEEEecCCCceEEEEEeCCCC
Q 017673 330 SRLYARYFGGDLQIISMEGYGTDAYLHLSRLG 361 (368)
Q Consensus 330 ~k~iv~~~gG~i~v~s~~g~Gt~f~i~lP~~~ 361 (368)
|+.+++.|||+|++.|.+|.||+|+|+||...
T Consensus 646 ~~~iv~~~gG~i~v~s~~g~Gt~f~i~LP~~~ 677 (828)
T PRK13837 646 VHGIVSAHAGYIDVQSTVGRGTRFDVYLPPSS 677 (828)
T ss_pred HHHHHHHCCCEEEEEecCCCeEEEEEEEeCCC
Confidence 99999999999999999999999999999753
No 23
>COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms]
Probab=99.96 E-value=1.7e-28 Score=230.39 Aligned_cols=228 Identities=16% Similarity=0.159 Sum_probs=191.3
Q ss_pred CchhHHHHHHHHHHHHHhccCchHHHHHHHHHHhcccCccccccChHHHHHHHHHHHHhhHHHHHhHHHHhhhcCCCCCC
Q 017673 103 STSDERDFTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIGQHVELHNPNPPP 182 (368)
Q Consensus 103 ~~~~~~~~~~~l~~~~~~~~~~l~~i~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~li~~~l~l~~~~~~~ 182 (368)
..|+..++.+..+.++||++|||+-|..++..+...+..+..+ +.+...+..+.+.+.-..+..||+++..++|...
T Consensus 479 ~AQRs~AW~dVArRIAHEIKNPLTPIQLSAERl~rk~gk~i~e-Drevfd~~tdTIirQV~dI~rMVdeF~afARmP~-- 555 (712)
T COG5000 479 IAQRSAAWGDVARRIAHEIKNPLTPIQLSAERLLRKLGKEIDE-DREVFDRCTDTIIRQVEDIKRMVDEFRAFARMPA-- 555 (712)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCchhhhhHHHHHHHhccccch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--
Confidence 4566688999999999999999999999999998888744333 6778899999999999999999999999999833
Q ss_pred CcccccccCCCHHHHHHHHHHHHHHHHHhhhCCCCceEEEc-CCCceeeccchhHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 017673 183 HCIGYIDTKMSPVQVARNASEHARCVCLREYGSAPDFNIYG-DPSFTFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKV 261 (368)
Q Consensus 183 ~~~~~~~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~~d~~~l~~vl~nLl~NAi~~~~~~~~~~~~~ 261 (368)
...++.||.+++++++..+... +..+.+..+. +++.+..+|+..|.|+|.||++||.++........ .+
T Consensus 556 ----p~~e~~dL~~ll~e~~~L~e~~-----~~~i~f~~e~g~epl~~~~D~~~l~Qvf~NliKNA~EAi~~~~~~e-~~ 625 (712)
T COG5000 556 ----PKLEKSDLRALLKEVSFLYEIG-----NDHIVFAAEFGGEPLIGMADATLLGQVFGNLLKNAAEAIEAVEAEE-RR 625 (712)
T ss_pred ----CCCCcchHHHHHHHHHHHHhcc-----CCCeEEEeecCCCceeeecCHHHHHHHHHHHHHhHHHHhhhccccc-CC
Confidence 2256899999999998876531 2345565553 34677889999999999999999999987632211 11
Q ss_pred CCCEEEEEEeCCCeEEEEEeeeCCCCCCCCcccccccccccCCCCCCcccccccCCCCCCccccChHHHHHHHHHhCCeE
Q 017673 262 APPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAADKGTMAGYGYGLPISRLYARYFGGDL 341 (368)
Q Consensus 262 ~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~i 341 (368)
.+.|+++....++.+++.|.|||.|+|.+.+.++|+||.|++.. ||||||+|||+|+|.|||.|
T Consensus 626 ~~~i~~~~~~~~g~i~v~V~DNGkG~p~e~r~r~~EPYvTtr~K----------------GTGLGLAiVKkIvEeHGG~l 689 (712)
T COG5000 626 TALIRVSLDDADGRIVVDVIDNGKGFPRENRHRALEPYVTTREK----------------GTGLGLAIVKKIVEEHGGRL 689 (712)
T ss_pred cceEEEEEecCCCeEEEEEecCCCCCChHHhhhhccCceecccc----------------cccccHHHHHHHHHhcCCeE
Confidence 23588888888999999999999999999999999999999976 99999999999999999999
Q ss_pred EEEecC-CCceEEEEEeCC
Q 017673 342 QIISME-GYGTDAYLHLSR 359 (368)
Q Consensus 342 ~v~s~~-g~Gt~f~i~lP~ 359 (368)
++++.+ -.|+++.|.||.
T Consensus 690 eL~da~d~~GA~i~i~fp~ 708 (712)
T COG5000 690 ELHNAPDFDGAMIRIKFPL 708 (712)
T ss_pred EecCCCCCCCcEEEEEccc
Confidence 999983 349999999997
No 24
>TIGR03785 marine_sort_HK proteobacterial dedicated sortase system histidine kinase. This histidine kinase protein is paired with an adjacent response regulator (TIGR03787) gene. It co-occurs with a variant sortase enzyme (TIGR03784), usually in the same gene neighborhood, in proteobacterial species most of which are marine, and with an LPXTG motif-containing sortase target conserved protein (TIGR03788). Sortases and LPXTG proteins are far more common in Gram-positive bacteria, where sortase systems mediate attachment to the cell wall or cross-linking of pilin structures. We give this predicted sensor histidine kinase the gene symbol psdS, for Proteobacterial Dedicated Sortase system Sensor histidine kinase.
Probab=99.96 E-value=1.8e-28 Score=248.78 Aligned_cols=243 Identities=16% Similarity=0.183 Sum_probs=194.8
Q ss_pred CChhHHHHHHHHHHHHHHhhcCCCCCCchhHHHHHHHHHHHHHhccCchHHHHHHHHHHhcccCccccccChHHHHHHHH
Q 017673 77 EKPAVLKVRDWYLDSFRDLRSFPDIRSTSDERDFTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLD 156 (368)
Q Consensus 77 ~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~~~~~l~~~~~~~~~~~~~~~~~~~l~ 156 (368)
...|++.+.+.++.+..++++. .+....+...++|++++|+..+...+..+..... .+...++++
T Consensus 460 ~~DEIg~La~afn~M~~~L~~~--------~~~l~~~s~~lSHELrtPL~~I~~~le~L~~~~~-------~~~~~~~le 524 (703)
T TIGR03785 460 SRDEIGDLSRSFAQMVARLRQY--------THYLENMSSRLSHELRTPVAVVRSSLENLELQAL-------EQEKQKYLE 524 (703)
T ss_pred ChHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCC-------CHHHHHHHH
Confidence 4568888888888887776543 2334568889999999999999977766653322 345556777
Q ss_pred HHHHhhHHHHHhHHHHhhhcCCCCCCCcccccccCCCHHHHHHHHHHHHHHHHHhhhCCCCceEEEcCCCceeeccchhH
Q 017673 157 RFYMSRIGIRMLIGQHVELHNPNPPPHCIGYIDTKMSPVQVARNASEHARCVCLREYGSAPDFNIYGDPSFTFPYVPSHL 236 (368)
Q Consensus 157 ~~~~~~~~~~~li~~~l~l~~~~~~~~~~~~~~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~d~~~l 236 (368)
.+......+..++++++.+++. +........+.+++.+++++++..+...+..+ .+.+.+.. .+..+.+|+..|
T Consensus 525 ~i~~~i~~L~~li~~l~~~arl--e~~~~~~~~~~~dl~~ll~~~i~~~~~~~~~~---~i~l~i~~-~~~~i~~d~~~L 598 (703)
T TIGR03785 525 RAREGTERLSMILNNMSEATRL--EQAIQSAEVEDFDLSEVLSGCMQGYQMTYPPQ---RFELNIPE-TPLVMRGSPELI 598 (703)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh--hcccccccceeecHHHHHHHHHHHHHHHhhcC---CEEEEecC-CCeEEEECHHHH
Confidence 7777777788899999998886 33333444578999999999999888766654 44444433 334789999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEEEEeCCCeEEEEEeeeCCCCCCCCcccccccccccCCCCCCcccccccC
Q 017673 237 HLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAAD 316 (368)
Q Consensus 237 ~~vl~nLl~NAi~~~~~~~~~~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~~~~~~ 316 (368)
.+++.|||+||++|+++ ++.|.|.+...++.+.|.|+|+|+|||++.++++|++||+++.. .
T Consensus 599 ~~il~NLI~NAik~s~~--------~~~I~I~~~~~~~~v~I~V~D~G~GI~~e~~~~IFe~F~t~~~~----------~ 660 (703)
T TIGR03785 599 AQMLDKLVDNAREFSPE--------DGLIEVGLSQNKSHALLTVSNEGPPLPEDMGEQLFDSMVSVRDQ----------G 660 (703)
T ss_pred HHHHHHHHHHHHHHCCC--------CCeEEEEEEEcCCEEEEEEEEcCCCCCHHHHHHHhCCCeecCCC----------C
Confidence 99999999999999876 57899999999999999999999999999999999999988754 2
Q ss_pred CCCCCccccChHHHHHHHHHhCCeEEEEecCC-CceEEEEEeC
Q 017673 317 KGTMAGYGYGLPISRLYARYFGGDLQIISMEG-YGTDAYLHLS 358 (368)
Q Consensus 317 ~~~~~g~GlGL~i~k~iv~~~gG~i~v~s~~g-~Gt~f~i~lP 358 (368)
.....|+||||+|||.+++.|||+|++.+.++ .|++|+|+||
T Consensus 661 ~~~~~g~GLGL~Ivr~Iv~~~gG~I~v~s~~~g~Gt~f~I~LP 703 (703)
T TIGR03785 661 AQDQPHLGLGLYIVRLIADFHQGRIQAENRQQNDGVVFRISLP 703 (703)
T ss_pred CCCCCCccHHHHHHHHHHHHcCCEEEEEECCCCCeEEEEEEeC
Confidence 23335899999999999999999999999865 7999999998
No 25
>TIGR01386 cztS_silS_copS heavy metal sensor kinase. Members of this family contain a sensor histidine kinase domain (Pfam:PF00512) and a domain found in bacterial signal proteins (Pfam:PF00672). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc.
Probab=99.96 E-value=4.9e-28 Score=235.57 Aligned_cols=241 Identities=14% Similarity=0.155 Sum_probs=193.2
Q ss_pred ChhHHHHHHHHHHHHHHhhcCCCCCCchhHHHHHHHHHHHHHhccCchHHHHHHHHHHhcccCccccccChHHHHHHHHH
Q 017673 78 KPAVLKVRDWYLDSFRDLRSFPDIRSTSDERDFTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDR 157 (368)
Q Consensus 78 ~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~~~~~l~~~~~~~~~~~~~~~~~~~l~~ 157 (368)
..++..+...++.+.+++... .....++...++|++++|++.+......+.... ...+...+.+..
T Consensus 217 ~dEi~~l~~~~n~m~~~l~~~--------~~~~~~~~~~~~h~l~tpl~~~~~~~~~~~~~~------~~~~~~~~~~~~ 282 (457)
T TIGR01386 217 PAELRELAQSFNAMLGRLEDA--------FQRLSQFSADLAHELRTPLTNLLGQTQVALSQP------RTGEEYREVLES 282 (457)
T ss_pred hHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHhhhhhhcCcHHHHHHHHHHHHcCC------CCHHHHHHHHHH
Confidence 358888888888887776532 233456888999999999999886654433221 234556667777
Q ss_pred HHHhhHHHHHhHHHHhhhcCCCCCCCcccccccCCCHHHHHHHHHHHHHHHHHhhhCCCCceEEEcCCCceeeccchhHH
Q 017673 158 FYMSRIGIRMLIGQHVELHNPNPPPHCIGYIDTKMSPVQVARNASEHARCVCLREYGSAPDFNIYGDPSFTFPYVPSHLH 237 (368)
Q Consensus 158 ~~~~~~~~~~li~~~l~l~~~~~~~~~~~~~~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~d~~~l~ 237 (368)
.......+..++++++.+++. +..........+++.+++.+++..+...+..+ .+.+.+. .+..+.+|+..|.
T Consensus 283 ~~~~~~~l~~~i~~ll~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~i~~~~~--~~~~~~~~~~~l~ 355 (457)
T TIGR01386 283 NLEELERLSRMVSDMLFLARA--DNGQLALERVRLDLAAELAKVAEYFEPLAEER---GVRIRVE--GEGLVRGDPQMFR 355 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHh--hcccccccccccCHHHHHHHHHHHHHHHHHhC---CeEEEec--CCceEEECHHHHH
Confidence 666667778899999999887 33444455578999999999999987666655 4444444 4467899999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCCCEEEEEEeCCCeEEEEEeeeCCCCCCCCcccccccccccCCCCCCcccccccCC
Q 017673 238 LMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAADK 317 (368)
Q Consensus 238 ~vl~nLl~NAi~~~~~~~~~~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~~~~~~~ 317 (368)
+++.|++.||++|++. ++.|.|.+...++.+.|+|.|+|+|||++.++++|++||+++.. ..
T Consensus 356 ~~~~nll~Nai~~~~~--------~~~I~i~~~~~~~~~~i~v~D~G~g~~~~~~~~~~~~~~~~~~~----------~~ 417 (457)
T TIGR01386 356 RAISNLLSNALRHTPD--------GGTITVRIERRSDEVRVSVSNPGPGIPPEHLSRLFDRFYRVDPA----------RS 417 (457)
T ss_pred HHHHHHHHHHHHcCCC--------CceEEEEEEecCCEEEEEEEeCCCCCCHHHHHHhccccccCCcc----------cC
Confidence 9999999999999866 57899999999999999999999999999999999999998765 23
Q ss_pred CCCCccccChHHHHHHHHHhCCeEEEEecCCCceEEEEEeC
Q 017673 318 GTMAGYGYGLPISRLYARYFGGDLQIISMEGYGTDAYLHLS 358 (368)
Q Consensus 318 ~~~~g~GlGL~i~k~iv~~~gG~i~v~s~~g~Gt~f~i~lP 358 (368)
...+|+||||++|+++++.|||++++.+ +++||+|++.||
T Consensus 418 ~~~~g~GlGL~i~~~~~~~~~G~~~~~~-~~~G~~~~~~~P 457 (457)
T TIGR01386 418 NSGEGTGLGLAIVRSIMEAHGGRASAES-PDGKTRFILRFP 457 (457)
T ss_pred CCCCCccccHHHHHHHHHHCCCEEEEEe-CCCceEEEEecC
Confidence 3457999999999999999999999999 899999999998
No 26
>COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms]
Probab=99.96 E-value=1.8e-28 Score=230.62 Aligned_cols=225 Identities=16% Similarity=0.143 Sum_probs=186.0
Q ss_pred HHHHHHHHHHHhccCchHHHHHHHHHHhcccCccccccChHHHHHHHHHHHHhhHHHHHhHHHHhhhcCCCCCCCccccc
Q 017673 109 DFTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIGQHVELHNPNPPPHCIGYI 188 (368)
Q Consensus 109 ~~~~~l~~~~~~~~~~l~~i~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~li~~~l~l~~~~~~~~~~~~~ 188 (368)
.+..+...+.|++++||..|++.++.+....+ ....++..+++..+.+....+..||++++.+++... ....
T Consensus 523 el~~f~yv~sHdlqePl~~I~~~a~lL~~~~~----~~~d~~~~~~i~~~~~~~~~~~~lidd~l~~s~l~~--~~~~-- 594 (750)
T COG4251 523 ELRAFAYVASHDLQEPLRQISNYAQLLSERYS----DALDEEAKEFITFISRLTSLMQQLIDDLLTYSKLGL--TEAP-- 594 (750)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHhhhhccc----cccChHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcc--ccCC--
Confidence 35568888899999999999988877776644 234567777788777777788899999999999833 2222
Q ss_pred ccCCCHHHHHHHHHHHHHHHHHhhhCCCCceEEEcCCCceeeccchhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEE
Q 017673 189 DTKMSPVQVARNASEHARCVCLREYGSAPDFNIYGDPSFTFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRII 268 (368)
Q Consensus 189 ~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~d~~~l~~vl~nLl~NAi~~~~~~~~~~~~~~~~I~i~ 268 (368)
.++.++.+++++++.......... ++.+. .++-..+.+|+..+.|++.|||.||+||..+. .+.|.|+
T Consensus 595 l~~td~~~vv~~vl~~l~~ri~dt---gaei~--i~~lp~v~~d~~~l~qv~~NLi~Naik~~~~e-------~~~i~I~ 662 (750)
T COG4251 595 LQPTDVQKVVDKVLLELSQRIADT---GAEIR--IAPLPVVAADATQLGQVFQNLIANAIKFGGPE-------NPDIEIS 662 (750)
T ss_pred CCCcchHHHHHHHHHhcccccccc---cceEE--ecccceeecCHHHHHHHHHHHHhhheecCCCC-------CCceEEe
Confidence 347889999999988877766655 44444 44555689999999999999999999998662 3889999
Q ss_pred EEeCCCeEEEEEeeeCCCCCCCCcccccccccccCCCCCCcccccccCCCCCCccccChHHHHHHHHHhCCeEEEEecCC
Q 017673 269 VADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAADKGTMAGYGYGLPISRLYARYFGGDLQIISMEG 348 (368)
Q Consensus 269 ~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~i~v~s~~g 348 (368)
+.+.++.+++.|+|+|.||++...++||..|.+.... ....|+|+||+|||.|++.|+|+|+++|.+|
T Consensus 663 ~~r~ed~~t~sV~dng~Gi~~a~~~riF~iFqRl~s~------------~~y~gtG~GL~I~kkI~e~H~G~i~vEs~~g 730 (750)
T COG4251 663 AERQEDEWTFSVRDNGIGIDPAYFERIFVIFQRLHSR------------DEYLGTGLGLAICKKIAERHQGRIWVESTPG 730 (750)
T ss_pred eeccCCceEEEecCCCCCcCHHHHHHHHHHHHhcCch------------hhhcCCCccHHHHHHHHHHhCceEEEeecCC
Confidence 9999999999999999999999999999999887744 3457899999999999999999999999999
Q ss_pred CceEEEEEeCCCCCCCC
Q 017673 349 YGTDAYLHLSRLGDSQE 365 (368)
Q Consensus 349 ~Gt~f~i~lP~~~~~~e 365 (368)
.|.||++++|..+...+
T Consensus 731 EgsTF~f~lp~~~~e~~ 747 (750)
T COG4251 731 EGSTFYFTLPVGGEEPG 747 (750)
T ss_pred CceeEEEEeecCCcCcc
Confidence 99999999998876544
No 27
>PRK09835 sensor kinase CusS; Provisional
Probab=99.96 E-value=2e-27 Score=233.00 Aligned_cols=243 Identities=13% Similarity=0.135 Sum_probs=192.0
Q ss_pred hhHHHHHHHHHHHHHHhhcCCCCCCchhHHHHHHHHHHHHHhccCchHHHHHHHHHHhcccCccccccChHHHHHHHHHH
Q 017673 79 PAVLKVRDWYLDSFRDLRSFPDIRSTSDERDFTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDRF 158 (368)
Q Consensus 79 ~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~ 158 (368)
+++..+...++.+.+++... .....+++..++|++++|++.+......+..... ...+....+...
T Consensus 239 dEl~~l~~~~n~m~~~l~~~--------~~~~~~~~~~laheL~tpl~~i~~~~~~~~~~~~------~~~~~~~~l~~~ 304 (482)
T PRK09835 239 IELEQLVLSFNHMIERIEDV--------FTRQSNFSADIAHEIRTPITNLITQTEIALSQSR------SQKELEDVLYSN 304 (482)
T ss_pred hHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhCCC------CHHHHHHHHHHH
Confidence 58888999998888877653 1223458899999999999999866644432211 234555566665
Q ss_pred HHhhHHHHHhHHHHhhhcCCCCCCCcccccccCCCHHHHHHHHHHHHHHHHHhhhCCCCceEEEcCCCceeeccchhHHH
Q 017673 159 YMSRIGIRMLIGQHVELHNPNPPPHCIGYIDTKMSPVQVARNASEHARCVCLREYGSAPDFNIYGDPSFTFPYVPSHLHL 238 (368)
Q Consensus 159 ~~~~~~~~~li~~~l~l~~~~~~~~~~~~~~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~d~~~l~~ 238 (368)
..+..++..++++++.+++. ...........+++.++++.++..+......+ .+.+.+.. ....+.+|+..|.+
T Consensus 305 ~~~~~~~~~~i~~ll~~~~~--~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~---~~~~~~~~-~~~~v~~d~~~l~~ 378 (482)
T PRK09835 305 LEELTRMAKMVSDMLFLAQA--DNNQLIPEKKMLDLADEVGKVFDFFEAWAEER---GVELRFVG-DPCQVAGDPLMLRR 378 (482)
T ss_pred HHHHHHHHHHHHHHHHHHHh--cCCCCCCCceeecHHHHHHHHHHHHHHHHhhC---CEEEEEeC-CCcEEEECHHHHHH
Confidence 55666677789999999887 33333344568999999999999888766655 55555553 34568899999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCCCEEEEEEeCCCeEEEEEeeeCCCCCCCCcccccccccccCCCCCCcccccccCCC
Q 017673 239 MVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAADKG 318 (368)
Q Consensus 239 vl~nLl~NAi~~~~~~~~~~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~~~~~~~~ 318 (368)
++.|+++||++|+++ ++.|.|.+..+++.+.|.|.|+|+|||++.++++|+|||+.+.. ...
T Consensus 379 vl~nll~Na~~~~~~--------~~~I~i~~~~~~~~~~i~v~d~G~gi~~~~~~~if~~f~~~~~~----------~~~ 440 (482)
T PRK09835 379 AISNLLSNALRYTPA--------GEAITVRCQEVDHQVQLVVENPGTPIAPEHLPRLFDRFYRVDPS----------RQR 440 (482)
T ss_pred HHHHHHHHHHhcCCC--------CCeEEEEEEEeCCEEEEEEEECCCCcCHHHHHHHhCCcccCCCC----------CCC
Confidence 999999999999866 56799999888889999999999999999999999999998754 233
Q ss_pred CCCccccChHHHHHHHHHhCCeEEEEecCCCceEEEEEeCCC
Q 017673 319 TMAGYGYGLPISRLYARYFGGDLQIISMEGYGTDAYLHLSRL 360 (368)
Q Consensus 319 ~~~g~GlGL~i~k~iv~~~gG~i~v~s~~g~Gt~f~i~lP~~ 360 (368)
...|+||||++|+++++.|||+++++|.+ .||+|+|.||..
T Consensus 441 ~~~g~GlGL~i~~~i~~~~~g~i~~~s~~-~g~~~~i~lP~~ 481 (482)
T PRK09835 441 KGEGSGIGLAIVKSIVVAHKGTVAVTSDA-RGTRFVISLPRL 481 (482)
T ss_pred CCCCcchHHHHHHHHHHHCCCEEEEEECC-CcEEEEEEeeCC
Confidence 34699999999999999999999999975 599999999964
No 28
>PRK11100 sensory histidine kinase CreC; Provisional
Probab=99.96 E-value=3.6e-27 Score=230.54 Aligned_cols=244 Identities=18% Similarity=0.204 Sum_probs=199.5
Q ss_pred cCChhHHHHHHHHHHHHHHhhcCCCCCCchhHHHHHHHHHHHHHhccCchHHHHHHHHHHhcccCccccccChHHHHHHH
Q 017673 76 SEKPAVLKVRDWYLDSFRDLRSFPDIRSTSDERDFTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFL 155 (368)
Q Consensus 76 ~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~~~~~l~~~~~~~~~~~~~~~~~~~l 155 (368)
....++..+...++.+.+.+.. .....++++.+.|++++|++.+...+..+....+ .+...+++
T Consensus 231 ~~~dEi~~l~~~~~~m~~~l~~---------~~~~~~~~~~~~h~l~~pl~~i~~~~~~l~~~~~-------~~~~~~~~ 294 (475)
T PRK11100 231 LGSSELRELAQALESMRVKLEG---------KAYVEQYVQTLTHELKSPLAAIRGAAELLQEDPP-------PEDRARFT 294 (475)
T ss_pred cchHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHhhhhhcCcHHHHHHHHHHHhccCC-------hHHHHHHH
Confidence 3446777777777776666533 2334568889999999999999977776665333 55677788
Q ss_pred HHHHHhhHHHHHhHHHHhhhcCCCCCCCcccccccCCCHHHHHHHHHHHHHHHHHhhhCCCCceEEEcCCCceeeccchh
Q 017673 156 DRFYMSRIGIRMLIGQHVELHNPNPPPHCIGYIDTKMSPVQVARNASEHARCVCLREYGSAPDFNIYGDPSFTFPYVPSH 235 (368)
Q Consensus 156 ~~~~~~~~~~~~li~~~l~l~~~~~~~~~~~~~~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~d~~~ 235 (368)
+.+......+..++++++.+++. ...........+++.++++++...+...+... .+.+.+..+ +..+.+|...
T Consensus 295 ~~~~~~~~~~~~~i~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~i~~~~~~~-~~~~~~~~~~ 368 (475)
T PRK11100 295 GNILTQSARLQQLIDRLLELARL--EQRQELEVLEPVALAALLEELVEAREAQAAAK---GITLRLRPD-DARVLGDPFL 368 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc--ccCCCCccceeccHHHHHHHHHHHHHHHHHhC---CceEEEeCC-CceEEECHHH
Confidence 88888888889999999999887 33333334578999999999999988776665 677777665 6678899999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEEEEeCCCeEEEEEeeeCCCCCCCCcccccccccccCCCCCCccccccc
Q 017673 236 LHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAA 315 (368)
Q Consensus 236 l~~vl~nLl~NAi~~~~~~~~~~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~~~~~ 315 (368)
|.+++.||+.||++|+.+ ++.|.|++...++.+.|.|+|+|+|||++.++++|++||+....
T Consensus 369 l~~vl~nli~Na~~~~~~--------~~~i~i~~~~~~~~~~i~i~D~G~Gi~~~~~~~i~~~~~~~~~~---------- 430 (475)
T PRK11100 369 LRQALGNLLDNAIDFSPE--------GGTITLSAEVDGEQVALSVEDQGPGIPDYALPRIFERFYSLPRP---------- 430 (475)
T ss_pred HHHHHHHHHHHHHHhCCC--------CCEEEEEEEEcCCEEEEEEEECCCCCCHHHHHHHHHHHccCCCC----------
Confidence 999999999999999755 57899999999999999999999999999999999999987542
Q ss_pred CCCCCCccccChHHHHHHHHHhCCeEEEEecCCCceEEEEEeCCC
Q 017673 316 DKGTMAGYGYGLPISRLYARYFGGDLQIISMEGYGTDAYLHLSRL 360 (368)
Q Consensus 316 ~~~~~~g~GlGL~i~k~iv~~~gG~i~v~s~~g~Gt~f~i~lP~~ 360 (368)
.....|+|+||++|+.+++.|||++.++|.+++||+|.|.||..
T Consensus 431 -~~~~~~~GlGL~i~~~~~~~~~G~i~i~s~~~~Gt~v~i~lp~~ 474 (475)
T PRK11100 431 -ANGRKSTGLGLAFVREVARLHGGEVTLRNRPEGGVLATLTLPRH 474 (475)
T ss_pred -CCCCCCcchhHHHHHHHHHHCCCEEEEEEcCCCeEEEEEEeeCC
Confidence 12246899999999999999999999999998999999999974
No 29
>TIGR02966 phoR_proteo phosphate regulon sensor kinase PhoR. Members of this protein family are the regulatory histidine kinase PhoR associated with the phosphate ABC transporter in most Proteobacteria. Related proteins from Gram-positive organisms are not included in this model. The phoR gene usually is adjacent to the response regulator phoB gene (TIGR02154).
Probab=99.96 E-value=2.3e-27 Score=220.74 Aligned_cols=219 Identities=16% Similarity=0.188 Sum_probs=182.9
Q ss_pred HHHHHHHHHhccCchHHHHHHHHHHhcccCccccccChHHHHHHHHHHHHhhHHHHHhHHHHhhhcCCCCCCCccccccc
Q 017673 111 TQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIGQHVELHNPNPPPHCIGYIDT 190 (368)
Q Consensus 111 ~~~l~~~~~~~~~~l~~i~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~li~~~l~l~~~~~~~~~~~~~~~ 190 (368)
.+++..+.|++++||..+...+..+..... ...+....+++.+......+..++++++.+++. ..........
T Consensus 115 ~~~~~~l~h~l~~pL~~i~~~~~~l~~~~~-----~~~~~~~~~~~~i~~~~~~l~~~i~~l~~~~~~--~~~~~~~~~~ 187 (333)
T TIGR02966 115 RDFVANVSHELRTPLTVLRGYLETLADGPD-----EDPEEWNRALEIMLEQSQRMQSLVEDLLTLSRL--ESAASPLEDE 187 (333)
T ss_pred HHHHHhhhhhhcccHHHHHHHHHHHHhccc-----CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hcCCcccccc
Confidence 558899999999999999866665543321 234566677787777788888899999999886 3334445567
Q ss_pred CCCHHHHHHHHHHHHHHHHHhhhCCCCceEEEcCCCceeeccchhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEEEE
Q 017673 191 KMSPVQVARNASEHARCVCLREYGSAPDFNIYGDPSFTFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVA 270 (368)
Q Consensus 191 ~~~l~~li~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~d~~~l~~vl~nLl~NAi~~~~~~~~~~~~~~~~I~i~~~ 270 (368)
.+++.+++..++..+...+..+ .+.+.+..+....+.+|+..|.+++.||+.||++|++. ++.|.|.+.
T Consensus 188 ~~~l~~~i~~~~~~~~~~~~~~---~i~i~~~~~~~~~~~~d~~~l~~vl~nll~Nai~~~~~--------~~~i~i~~~ 256 (333)
T TIGR02966 188 PVDMPALLDHLRDEAEALSQGK---NHQITFEIDGGVDVLGDEDELRSAFSNLVSNAIKYTPE--------GGTITVRWR 256 (333)
T ss_pred ccCHHHHHHHHHHHHHHHHHHc---CcEEEEcCCCCceEEECHHHHHHHHHHHHHHhheeCCC--------CCeEEEEEE
Confidence 8999999999999998877775 67777777667789999999999999999999999765 578999998
Q ss_pred eCCCeEEEEEeeeCCCCCCCCcccccccccccCCCCCCcccccccCCCCCCccccChHHHHHHHHHhCCeEEEEecCCCc
Q 017673 271 DGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAADKGTMAGYGYGLPISRLYARYFGGDLQIISMEGYG 350 (368)
Q Consensus 271 ~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~i~v~s~~g~G 350 (368)
..++.+.|.|.|+|+|||++.++++|++||+.+.. ......|+|+||++|+.+++.|||++++.|.++.|
T Consensus 257 ~~~~~~~i~i~d~G~gi~~~~~~~if~~~~~~~~~----------~~~~~~g~glGL~~~~~~~~~~gG~i~~~s~~~~G 326 (333)
T TIGR02966 257 RDGGGAEFSVTDTGIGIAPEHLPRLTERFYRVDKS----------RSRDTGGTGLGLAIVKHVLSRHHARLEIESELGKG 326 (333)
T ss_pred EcCCEEEEEEEecCCCCCHHHHhhhccCceecCcc----------cccCCCCCcccHHHHHHHHHHCCCEEEEEecCCCC
Confidence 88889999999999999999999999999987644 12334689999999999999999999999999999
Q ss_pred eEEEEEe
Q 017673 351 TDAYLHL 357 (368)
Q Consensus 351 t~f~i~l 357 (368)
|+|+|+|
T Consensus 327 t~~~i~l 333 (333)
T TIGR02966 327 STFSFIF 333 (333)
T ss_pred eEEEEEC
Confidence 9999975
No 30
>PRK10337 sensor protein QseC; Provisional
Probab=99.96 E-value=8.1e-27 Score=226.84 Aligned_cols=236 Identities=14% Similarity=0.123 Sum_probs=186.2
Q ss_pred ChhHHHHHHHHHHHHHHhhcCCCCCCchhHHHHHHHHHHHHHhccCchHHHHHHHHHHhcccCccccccChHHHHHHHHH
Q 017673 78 KPAVLKVRDWYLDSFRDLRSFPDIRSTSDERDFTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDR 157 (368)
Q Consensus 78 ~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~~~~~l~~~~~~~~~~~~~~~~~~~l~~ 157 (368)
..++..+...++...+++... .++ ..+++..++|++++|+..+......+.... ...+....++..
T Consensus 213 ~~Ei~~l~~~~n~~~~~l~~~-----~~~---~~~~~~~~ahelrtpl~~i~~~~~~~~~~~------~~~~~~~~~l~~ 278 (449)
T PRK10337 213 PSEVRPLVEALNQLFARTHAM-----MVR---ERRFTSDAAHELRSPLAALKVQTEVAQLSD------DDPQARKKALLQ 278 (449)
T ss_pred ChHHHHHHHHHHHHHHHHHHH-----HHH---HHHHHHHHHHHhcCHHHHHHHHHHHHhccC------CCHHHHHHHHHH
Confidence 567888888888887776542 111 234789999999999999986665443321 223445567777
Q ss_pred HHHhhHHHHHhHHHHhhhcCCCCCCCcccccccCCCHHHHHHHHHHHHHHHHHhhhCCCCceEEEcCCC-ceeeccchhH
Q 017673 158 FYMSRIGIRMLIGQHVELHNPNPPPHCIGYIDTKMSPVQVARNASEHARCVCLREYGSAPDFNIYGDPS-FTFPYVPSHL 236 (368)
Q Consensus 158 ~~~~~~~~~~li~~~l~l~~~~~~~~~~~~~~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~d~~~l 236 (368)
+.....++..++++++.+++. +........+++++.+++++++..+...+..+ .+.+.+..++. ..+.+|+..+
T Consensus 279 ~~~~~~~~~~l~~~ll~~~r~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~---~i~~~~~~~~~~~~~~~~~~~l 353 (449)
T PRK10337 279 LHAGIDRATRLVDQLLTLSRL--DSLDNLQDVAEIPLEDLLQSAVMDIYHTAQQA---GIDVRLTLNAHPVIRTGQPLLL 353 (449)
T ss_pred HHHHHHHHHHHHHHHHHHHhc--CCCCCCCCCcccCHHHHHHHHHHHHHHHHHHc---CCEEEEecCCCCceeecCHHHH
Confidence 777777888899999999987 33333334568999999999999888777765 67777776544 4568999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEEEEeCCCeEEEEEeeeCCCCCCCCcccccccccccCCCCCCcccccccC
Q 017673 237 HLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAAD 316 (368)
Q Consensus 237 ~~vl~nLl~NAi~~~~~~~~~~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~~~~~~ 316 (368)
.+++.||++||++|+++ ++.|.|.+... .+.|+|+|+|||++.++++|+|||+.+..
T Consensus 354 ~~vl~Nli~NA~k~~~~--------~~~i~i~~~~~----~i~i~D~G~Gi~~~~~~~if~~f~~~~~~----------- 410 (449)
T PRK10337 354 SLLVRNLLDNAIRYSPQ--------GSVVDVTLNAR----NFTVRDNGPGVTPEALARIGERFYRPPGQ----------- 410 (449)
T ss_pred HHHHHHHHHHHHhhCCC--------CCeEEEEEEee----EEEEEECCCCCCHHHHHHhcccccCCCCC-----------
Confidence 99999999999999866 57788877543 69999999999999999999999986432
Q ss_pred CCCCCccccChHHHHHHHHHhCCeEEEEecCCCceEEEEEe
Q 017673 317 KGTMAGYGYGLPISRLYARYFGGDLQIISMEGYGTDAYLHL 357 (368)
Q Consensus 317 ~~~~~g~GlGL~i~k~iv~~~gG~i~v~s~~g~Gt~f~i~l 357 (368)
..+|+||||+||+++++.|||+++++|.+++|++|+|.|
T Consensus 411 --~~~g~GlGL~iv~~i~~~~gg~l~~~s~~~~G~~~~i~~ 449 (449)
T PRK10337 411 --EATGSGLGLSIVRRIAKLHGMNVSFGNAPEGGFEAKVSW 449 (449)
T ss_pred --CCCccchHHHHHHHHHHHcCCEEEEEecCCCeEEEEEeC
Confidence 135999999999999999999999999999999999875
No 31
>TIGR02916 PEP_his_kin putative PEP-CTERM system histidine kinase. Members of this protein family have a novel N-terminal domain, a single predicted membrane-spanning helix, and a predicted cystosolic histidine kinase domain. We designate this protein PrsK, and its companion DNA-binding response regulator protein (TIGR02915) PrsR. These predicted signal-transducing proteins appear to enable enhancer-dependent transcriptional activation. The prsK gene is often associated with exopolysaccharide biosynthesis genes.
Probab=99.95 E-value=3.8e-27 Score=239.86 Aligned_cols=210 Identities=20% Similarity=0.232 Sum_probs=166.9
Q ss_pred chhHHHHHHHHHHHHHhccCchHHHHHHHHHHhcccCccccccChHHHHHHHHHHHHhhHHHHHhHHHHhhhcCCCCCCC
Q 017673 104 TSDERDFTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIGQHVELHNPNPPPH 183 (368)
Q Consensus 104 ~~~~~~~~~~l~~~~~~~~~~l~~i~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~li~~~l~l~~~~~~~~ 183 (368)
.++.+.++++...+.||++||+..+...+........ ..+...+.++.+.....+++.++.++.....
T Consensus 469 ~~~~~~~~~~~a~i~HdLrn~l~~l~~~l~~~~~~~~------~~~~~~~~l~~i~~~~~rl~~ll~~l~~~~~------ 536 (679)
T TIGR02916 469 ARQFEAFNRMSAFVVHDLKNLVAQLSLLLRNAERHKD------NPEFQDDMLETVENAVNRMKKLLAQLRSKGL------ 536 (679)
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhccc------CHHHHHHHHHHHHHHHHHHHHHHHHHHhccc------
Confidence 3334556778889999999999998865554433222 2344555666666666677777777654332
Q ss_pred cccccccCCCHHHHHHHHHHHHHHHHHhhhCCCCceEEEcCCCceeeccchhHHHHHHHHHHHHHHHHHHhhcCCCCCCC
Q 017673 184 CIGYIDTKMSPVQVARNASEHARCVCLREYGSAPDFNIYGDPSFTFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAP 263 (368)
Q Consensus 184 ~~~~~~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~d~~~l~~vl~nLl~NAi~~~~~~~~~~~~~~~ 263 (368)
......+++.++++++.+..... ...+.+..+.+..+.+|+..+.+++.||++||++|+++ ++
T Consensus 537 --~~~~~~~~l~~ll~~~~~~~~~~-------~~~~~l~~~~~~~v~~d~~~l~~vl~nLl~NAik~~~~--------~~ 599 (679)
T TIGR02916 537 --EEEKLCVDLVDLLRRAIASKRAQ-------GPRPEVSIDTDLSVRADRERLERVLGHLVQNALEATPG--------EG 599 (679)
T ss_pred --ccCCccccHHHHHHHHHHHhhhh-------cCCceEEeCCCceEEECHHHHHHHHHHHHHHHHHhCCC--------CC
Confidence 22345789999999888765431 33444544566789999999999999999999999876 57
Q ss_pred CEEEEEEeCCCeEEEEEeeeCCCCCCCC-cccccccccccCCCCCCcccccccCCCCCCccccChHHHHHHHHHhCCeEE
Q 017673 264 PIRIIVADGLEDVTIKVSDEGGGIPRSG-LPKIFTYLYSTARNPLDENTDLAADKGTMAGYGYGLPISRLYARYFGGDLQ 342 (368)
Q Consensus 264 ~I~i~~~~~~~~~~i~V~D~G~Gi~~~~-~~~if~~f~~~~~~~~~~~~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~i~ 342 (368)
+|.|++...++.+.|+|+|+|+|||++. .+++|+||++++.. |+|+||++||++++.|||+++
T Consensus 600 ~I~I~~~~~~~~~~i~V~D~G~Gi~~~~i~~~lF~pf~~~~~~----------------G~GLGL~i~~~iv~~~gG~i~ 663 (679)
T TIGR02916 600 RVAIRVERECGAARIEIEDSGCGMSPAFIRERLFKPFDTTKGA----------------GMGIGVYECRQYVEEIGGRIE 663 (679)
T ss_pred cEEEEEEEcCCEEEEEEEEcCCCcChHHHHHhcCCCCCCCCCC----------------CcchhHHHHHHHHHHcCCEEE
Confidence 9999999888999999999999999998 99999999998755 999999999999999999999
Q ss_pred EEecCCCceEEEEEeC
Q 017673 343 IISMEGYGTDAYLHLS 358 (368)
Q Consensus 343 v~s~~g~Gt~f~i~lP 358 (368)
++|.+|+||+|+++||
T Consensus 664 v~s~~g~Gt~f~i~LP 679 (679)
T TIGR02916 664 VESTPGQGTIFTLVLP 679 (679)
T ss_pred EEecCCCceEEEEEeC
Confidence 9999999999999998
No 32
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
Probab=99.95 E-value=3.7e-27 Score=254.54 Aligned_cols=220 Identities=15% Similarity=0.209 Sum_probs=177.8
Q ss_pred HHHHHHHHHHHhccCchHHHHHHHHHHhcccCccccccChHHHHHHHHHHHHhhHHHHHhHHHHhhhcCCCCCCCccccc
Q 017673 109 DFTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIGQHVELHNPNPPPHCIGYI 188 (368)
Q Consensus 109 ~~~~~l~~~~~~~~~~l~~i~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~li~~~l~l~~~~~~~~~~~~~ 188 (368)
...+++..++||+||||+.|.+.+..+..... ..+.....+..+.....++..++++++++++. ..+.....
T Consensus 711 ~~~~~~~~isHelrtPL~~i~~~~~ll~~~~~------~~~~~~~~l~~~~~~~~~l~~li~~ll~~~~~--~~~~~~~~ 782 (1197)
T PRK09959 711 AKSQFLATMSHEIRTPISSIMGFLELLSGSGL------SKEQRVEAISLAYATGQSLLGLIGEILDVDKI--ESGNYQLQ 782 (1197)
T ss_pred HHHHHHHhcChhhCccHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hcCCceee
Confidence 45778999999999999999966655543222 23455667777777777888899999999998 55556666
Q ss_pred ccCCCHHHHHHHHHHHHHHHHHhhhCCCCceEEEcC--CCceeeccchhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEE
Q 017673 189 DTKMSPVQVARNASEHARCVCLREYGSAPDFNIYGD--PSFTFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIR 266 (368)
Q Consensus 189 ~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~~d~~~l~~vl~nLl~NAi~~~~~~~~~~~~~~~~I~ 266 (368)
...+++.+++++++..+...+..+ .+.+.+..+ ....+.+|+..|.||+.||++||++|++. +.+.
T Consensus 783 ~~~~~l~~~i~~~~~~~~~~~~~~---~i~~~~~~~~~~~~~v~~d~~~l~qvl~NLl~NAik~~~~---------g~i~ 850 (1197)
T PRK09959 783 PQWVDIPTLVQNTCHSFGAIAASK---SIALSCSSTFPDHYLVKIDPQAFKQVLSNLLSNALKFTTE---------GAVK 850 (1197)
T ss_pred eeeeCHHHHHHHHHHHHHHHHHhc---CcEEEEecCCCCceEEEECHHHHHHHHHHHHHHHHHhCCC---------CCEE
Confidence 789999999999999998877766 666666543 34568999999999999999999999865 4555
Q ss_pred EEEE-----eCCCeEEEEEeeeCCCCCCCCcccccccccccCCCCCCcccccccCCCCCCccccChHHHHHHHHHhCCeE
Q 017673 267 IIVA-----DGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAADKGTMAGYGYGLPISRLYARYFGGDL 341 (368)
Q Consensus 267 i~~~-----~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~i 341 (368)
|.+. .+...+.|+|+|+|+|||++.++++|+|||+++.. +..+|+||||+|||.+++.|||+|
T Consensus 851 i~~~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~~iF~~f~~~~~~------------~~~~G~GLGL~i~~~iv~~~gG~i 918 (1197)
T PRK09959 851 ITTSLGHIDDNHAVIKMTIMDSGSGLSQEEQQQLFKRYSQTSAG------------RQQTGSGLGLMICKELIKNMQGDL 918 (1197)
T ss_pred EEEEEeeecCCceEEEEEEEEcCCCCCHHHHHHhhccccccccC------------CCCCCcCchHHHHHHHHHHcCCEE
Confidence 5442 12335789999999999999999999999987643 224699999999999999999999
Q ss_pred EEEecCCCceEEEEEeCCC
Q 017673 342 QIISMEGYGTDAYLHLSRL 360 (368)
Q Consensus 342 ~v~s~~g~Gt~f~i~lP~~ 360 (368)
++.|.+|.||+|+|.||..
T Consensus 919 ~v~s~~~~Gt~f~i~lP~~ 937 (1197)
T PRK09959 919 SLESHPGIGTTFTITIPVE 937 (1197)
T ss_pred EEEeCCCCcEEEEEEEEcc
Confidence 9999999999999999975
No 33
>PRK11073 glnL nitrogen regulation protein NR(II); Provisional
Probab=99.95 E-value=7.6e-27 Score=219.51 Aligned_cols=208 Identities=18% Similarity=0.228 Sum_probs=163.7
Q ss_pred HHHHHHHHHHHhccCchHHHHHHHHHHhcccCccccccChHHHHHHHHHHHHhhHHHHHhHHHHhhhcCCCCCCCccccc
Q 017673 109 DFTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIGQHVELHNPNPPPHCIGYI 188 (368)
Q Consensus 109 ~~~~~l~~~~~~~~~~l~~i~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~li~~~l~l~~~~~~~~~~~~~ 188 (368)
...+++..++|++++||+.+.+.++.+..... .+....+++.+.....++..++++++.+.+...
T Consensus 129 ~~~~~~~~iaHelr~pL~~i~~~~~~l~~~~~-------~~~~~~~~~~i~~~~~~l~~lv~~l~~~~~~~~-------- 193 (348)
T PRK11073 129 AARDLVRGLAHEIKNPLGGLRGAAQLLSKALP-------DPALTEYTKVIIEQADRLRNLVDRLLGPQRPGT-------- 193 (348)
T ss_pred HHHHHHHhhhHhhcChHHHHHHHHHHhhhcCC-------ChHHHHHHHHHHHHHHHHHHHHHHHhcccCCCC--------
Confidence 44678999999999999999866655554333 345677788877788888889999987765521
Q ss_pred ccCCCHHHHHHHHHHHHHHHHHhhhCCCCceEEEcCCC-ceeeccchhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEE
Q 017673 189 DTKMSPVQVARNASEHARCVCLREYGSAPDFNIYGDPS-FTFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRI 267 (368)
Q Consensus 189 ~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~d~~~l~~vl~nLl~NAi~~~~~~~~~~~~~~~~I~i 267 (368)
....++..+++.+...+..... ..+.+.+..++. ..+.+|+..|.+++.||++||++|+... ++.|.|
T Consensus 194 ~~~~~l~~~~~~~~~~~~~~~~----~~i~i~~~~~~~~~~i~~d~~~l~~vl~nLl~NA~~~~~~~-------~~~i~i 262 (348)
T PRK11073 194 HVTESIHKVAERVVQLVSLELP----DNVRLIRDYDPSLPELAHDPDQIEQVLLNIVRNALQALGPE-------GGTITL 262 (348)
T ss_pred CccccHHHHHHHHHHHHhhhcc----CCcEEEEecCCCCCceeeCHHHHHHHHHHHHHHHHHHhccC-------CCeEEE
Confidence 2367888888887776653322 245666665444 3588999999999999999999998421 578888
Q ss_pred EEEeC----------CCeEEEEEeeeCCCCCCCCcccccccccccCCCCCCcccccccCCCCCCccccChHHHHHHHHHh
Q 017673 268 IVADG----------LEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAADKGTMAGYGYGLPISRLYARYF 337 (368)
Q Consensus 268 ~~~~~----------~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~~~~~~~~~~~g~GlGL~i~k~iv~~~ 337 (368)
.+... ...+.+.|.|+|+|||++..+++|+|||+++.. |+||||++|+.+++.|
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~i~v~D~G~Gi~~~~~~~iF~~~~~~~~~----------------g~GlGL~i~~~iv~~~ 326 (348)
T PRK11073 263 RTRTAFQLTLHGERYRLAARIDIEDNGPGIPPHLQDTLFYPMVSGREG----------------GTGLGLSIARNLIDQH 326 (348)
T ss_pred EEccccccccCCccCCceEEEEEEeCCCCCCHHHHhhccCCcccCCCC----------------CccCCHHHHHHHHHHc
Confidence 76432 113679999999999999999999999988755 9999999999999999
Q ss_pred CCeEEEEecCCCceEEEEEeCC
Q 017673 338 GGDLQIISMEGYGTDAYLHLSR 359 (368)
Q Consensus 338 gG~i~v~s~~g~Gt~f~i~lP~ 359 (368)
||+|+++|.+| ||+|+|.||.
T Consensus 327 gG~i~~~s~~~-~~~f~i~lP~ 347 (348)
T PRK11073 327 SGKIEFTSWPG-HTEFSVYLPI 347 (348)
T ss_pred CCeEEEEecCC-ceEEEEEEec
Confidence 99999999888 5999999995
No 34
>PRK09470 cpxA two-component sensor protein; Provisional
Probab=99.95 E-value=8e-26 Score=220.39 Aligned_cols=241 Identities=15% Similarity=0.175 Sum_probs=187.4
Q ss_pred CChhHHHHHHHHHHHHHHhhcCCCCCCchhHHHHHHHHHHHHHhccCchHHHHHHHHHHhcccCccccccChHHHHHHHH
Q 017673 77 EKPAVLKVRDWYLDSFRDLRSFPDIRSTSDERDFTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLD 156 (368)
Q Consensus 77 ~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~~~~~l~~~~~~~~~~~~~~~~~~~l~ 156 (368)
...|+..+...++.+.+++... .....+++..++|++++||+.+......+..... ... .+.
T Consensus 218 ~~dEi~~l~~~~n~m~~~l~~~--------~~~~~~~~~~~shel~tpl~~i~~~~~~~~~~~~------~~~----~~~ 279 (461)
T PRK09470 218 GPQEFRQAGASFNQMVTALERM--------MTSQQRLLSDISHELRTPLTRLQLATALLRRRQG------ESK----ELE 279 (461)
T ss_pred ChHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHhhhHhhCCHHHHHHHHHHHHhhccC------ChH----HHH
Confidence 3578888888888888777653 1223457889999999999999865554433222 111 233
Q ss_pred HHHHhhHHHHHhHHHHhhhcCCCCCCCcccccccCCCHHHHHHHHHHHHHHHHHhhhCCCCceEEEcC-CCceeeccchh
Q 017673 157 RFYMSRIGIRMLIGQHVELHNPNPPPHCIGYIDTKMSPVQVARNASEHARCVCLREYGSAPDFNIYGD-PSFTFPYVPSH 235 (368)
Q Consensus 157 ~~~~~~~~~~~li~~~l~l~~~~~~~~~~~~~~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~d~~~ 235 (368)
.+.....++..++++++.+++.... .....+.+++.+++++++..+....... .+.+.+... ....+.+|+..
T Consensus 280 ~i~~~~~~l~~~i~~l~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~~~~~ 353 (461)
T PRK09470 280 RIETEAQRLDSMINDLLVLSRNQQK---NHLERETFKANSLWSEVLEDAKFEAEQM---GKSLTVSAPPGPWPINGNPNA 353 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcc---cccccceecHHHHHHHHHHHHHHHHHHC---CCeEEEecCCcceEEEECHHH
Confidence 3444566678899999999886321 1234567999999999988877655554 566777643 34578999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEEEEeCCCeEEEEEeeeCCCCCCCCcccccccccccCCCCCCccccccc
Q 017673 236 LHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAA 315 (368)
Q Consensus 236 l~~vl~nLl~NAi~~~~~~~~~~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~~~~~ 315 (368)
|.+++.||++||++|++ +.|.|.+...++.+.|+|.|+|+||+++.++++|+|||+++..
T Consensus 354 l~~~l~nli~NA~~~~~----------~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~~~~~~~~---------- 413 (461)
T PRK09470 354 LASALENIVRNALRYSH----------TKIEVAFSVDKDGLTITVDDDGPGVPEEEREQIFRPFYRVDEA---------- 413 (461)
T ss_pred HHHHHHHHHHHHHHhCC----------CcEEEEEEEECCEEEEEEEECCCCCCHHHHHHhcCCCccCCcc----------
Confidence 99999999999999962 5688888888889999999999999999999999999998754
Q ss_pred CCCCCCccccChHHHHHHHHHhCCeEEEEecCCCceEEEEEeCCCC
Q 017673 316 DKGTMAGYGYGLPISRLYARYFGGDLQIISMEGYGTDAYLHLSRLG 361 (368)
Q Consensus 316 ~~~~~~g~GlGL~i~k~iv~~~gG~i~v~s~~g~Gt~f~i~lP~~~ 361 (368)
..+..+|+|+||++|+++++.|||++.+.|.+++||+|+|.+|...
T Consensus 414 ~~~~~~g~GlGL~iv~~~v~~~~G~l~~~s~~~~Gt~~~i~lp~~~ 459 (461)
T PRK09470 414 RDRESGGTGLGLAIVENAIQQHRGWVKAEDSPLGGLRLTIWLPLYK 459 (461)
T ss_pred cCCCCCCcchhHHHHHHHHHHCCCEEEEEECCCCeEEEEEEeeCCC
Confidence 2334569999999999999999999999999999999999999753
No 35
>PRK11360 sensory histidine kinase AtoS; Provisional
Probab=99.95 E-value=1.5e-26 Score=232.20 Aligned_cols=216 Identities=19% Similarity=0.252 Sum_probs=178.0
Q ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHhcccCccccccChHHHHHHHHHHHHhhHHHHHhHHHHhhhcCCCCCCCcccc
Q 017673 108 RDFTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIGQHVELHNPNPPPHCIGY 187 (368)
Q Consensus 108 ~~~~~~l~~~~~~~~~~l~~i~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~li~~~l~l~~~~~~~~~~~~ 187 (368)
..+.+++..+.|++++|+..+.+.++.+.... ......++++.+.....++..++++++.+++... .
T Consensus 388 ~~l~~~~~~~~hel~~~l~~i~~~~~~~~~~~-------~~~~~~~~l~~i~~~~~~~~~~~~~l~~~~~~~~--~---- 454 (607)
T PRK11360 388 AALGELVAGVAHEIRNPLTAIRGYVQIWRQQT-------SDPPSQEYLSVVLREVDRLNKVIDQLLEFSRPRE--S---- 454 (607)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcc-------cChhHHHHHHHHHHHHHHHHHHHHHHHHhhCCCc--C----
Confidence 34567889999999999999986665544332 2345667777777777888889999999988732 2
Q ss_pred cccCCCHHHHHHHHHHHHHHHHHhhhCCCCceEEEcCCCc-eeeccchhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEE
Q 017673 188 IDTKMSPVQVARNASEHARCVCLREYGSAPDFNIYGDPSF-TFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIR 266 (368)
Q Consensus 188 ~~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~d~~~l~~vl~nLl~NAi~~~~~~~~~~~~~~~~I~ 266 (368)
...++++..++..+...+....... .+.+.+.+++.. .+.+|+..|.+++.|++.||++|+.. ++.|.
T Consensus 455 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~nli~na~~~~~~--------~~~i~ 523 (607)
T PRK11360 455 QWQPVSLNALVEEVLQLFQTAGVQA---RVDFETELDNELPPIWADPELLKQVLLNILINAVQAISA--------RGKIR 523 (607)
T ss_pred ccceecHHHHHHHHHHHHHHhhhcc---CcEEEEEcCCCCCeEEECHHHHHHHHHHHHHHHHHHhcC--------CCeEE
Confidence 1358999999999988877554443 667777766554 48899999999999999999999866 58899
Q ss_pred EEEEeCCCe-EEEEEeeeCCCCCCCCcccccccccccCCCCCCcccccccCCCCCCccccChHHHHHHHHHhCCeEEEEe
Q 017673 267 IIVADGLED-VTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAADKGTMAGYGYGLPISRLYARYFGGDLQIIS 345 (368)
Q Consensus 267 i~~~~~~~~-~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~i~v~s 345 (368)
|++...++. +.|+|+|+|+|||++.++++|+|||+++.. |+|+||++|+.+++.|||+++++|
T Consensus 524 v~~~~~~~~~~~i~v~D~G~G~~~~~~~~~f~~~~~~~~~----------------g~glGL~~~~~~~~~~~G~i~~~s 587 (607)
T PRK11360 524 IRTWQYSDGQVAVSIEDNGCGIDPELLKKIFDPFFTTKAK----------------GTGLGLALSQRIINAHGGDIEVES 587 (607)
T ss_pred EEEEEcCCCEEEEEEEeCCCCCCHHHHhhhcCCceeCCCC----------------CCchhHHHHHHHHHHcCCEEEEEE
Confidence 998876666 999999999999999999999999988755 999999999999999999999999
Q ss_pred cCCCceEEEEEeCCCCCC
Q 017673 346 MEGYGTDAYLHLSRLGDS 363 (368)
Q Consensus 346 ~~g~Gt~f~i~lP~~~~~ 363 (368)
.+|+||+|+|.||.....
T Consensus 588 ~~~~Gt~~~i~lp~~~~~ 605 (607)
T PRK11360 588 EPGVGTTFTLYLPINPQG 605 (607)
T ss_pred cCCCceEEEEEecCCCCC
Confidence 999999999999986544
No 36
>PRK09467 envZ osmolarity sensor protein; Provisional
Probab=99.95 E-value=4.2e-25 Score=213.88 Aligned_cols=230 Identities=15% Similarity=0.159 Sum_probs=176.4
Q ss_pred CChhHHHHHHHHHHHHHHhhcCCCCCCchhHHHHHHHHHHHHHhccCchHHHHHHHHHHhcccCccccccChHHHHHHHH
Q 017673 77 EKPAVLKVRDWYLDSFRDLRSFPDIRSTSDERDFTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLD 156 (368)
Q Consensus 77 ~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~~~~~l~~~~~~~~~~~~~~~~~~~l~ 156 (368)
...|+..+.+.++++.+++.+. ++....+++.++|+++|||+.+......+... . ....+
T Consensus 204 ~~~Ei~~L~~~~n~m~~~l~~~--------~~~~~~~~~~lsHeLrtPL~~i~~~~e~~~~~---------~---~~~~~ 263 (435)
T PRK09467 204 GASEVRSVTRAFNQMAAGIKQL--------EDDRTLLMAGVSHDLRTPLTRIRLATEMMSEE---------D---GYLAE 263 (435)
T ss_pred CchHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHhhhhccchHHHHHHHHHhcccc---------h---HHHHH
Confidence 4568888888888887776432 22345589999999999999998544333210 1 11122
Q ss_pred HHHHhhHHHHHhHHHHhhhcCCCCCCCcccccccCCCHHHHHHHHHHHHHHHHHhhhCCCCceEEEcCCC-ceeeccchh
Q 017673 157 RFYMSRIGIRMLIGQHVELHNPNPPPHCIGYIDTKMSPVQVARNASEHARCVCLREYGSAPDFNIYGDPS-FTFPYVPSH 235 (368)
Q Consensus 157 ~~~~~~~~~~~li~~~l~l~~~~~~~~~~~~~~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~d~~~ 235 (368)
.+......+..++++++.+++.... .....+++.+++++++.... . ....+.+..+.. ..+.+|+..
T Consensus 264 ~i~~~~~~~~~~i~~~l~~~r~~~~-----~~~~~~~l~~~~~~~~~~~~----~---~~~~i~~~~~~~~~~~~~~~~~ 331 (435)
T PRK09467 264 SINKDIEECNAIIEQFIDYLRTGQE-----MPMEMADLNALLGEVIAAES----G---YEREIETALQPGPIEVPMNPIA 331 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCC-----CCccccCHHHHHHHHHHHhh----h---cCCeEEEecCCCCceEEECHHH
Confidence 3334455677789999999886321 22457899999988876543 1 244565554443 478999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEEEEeCCCeEEEEEeeeCCCCCCCCcccccccccccCCCCCCccccccc
Q 017673 236 LHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAA 315 (368)
Q Consensus 236 l~~vl~nLl~NAi~~~~~~~~~~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~~~~~ 315 (368)
|.+++.||++||++|+ .+.|.|++...++.+.|+|.|+|+||+++.++++|+|||+.+..
T Consensus 332 l~~il~NLl~NA~k~~----------~~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~~~~~f~~~~~~---------- 391 (435)
T PRK09467 332 IKRALANLVVNAARYG----------NGWIKVSSGTEGKRAWFQVEDDGPGIPPEQLKHLFQPFTRGDSA---------- 391 (435)
T ss_pred HHHHHHHHHHHHHHhC----------CCeEEEEEEecCCEEEEEEEecCCCcCHHHHHHhcCCcccCCCC----------
Confidence 9999999999999996 36899999888889999999999999999999999999987643
Q ss_pred CCCCCCccccChHHHHHHHHHhCCeEEEEecCCCceEEEEEeCCC
Q 017673 316 DKGTMAGYGYGLPISRLYARYFGGDLQIISMEGYGTDAYLHLSRL 360 (368)
Q Consensus 316 ~~~~~~g~GlGL~i~k~iv~~~gG~i~v~s~~g~Gt~f~i~lP~~ 360 (368)
+..+|+|+||+||+++++.|||++.+.+.+++|++|+|.||..
T Consensus 392 --~~~~g~GlGL~iv~~i~~~~~g~l~i~~~~~~G~~~~i~lp~~ 434 (435)
T PRK09467 392 --RGSSGTGLGLAIVKRIVDQHNGKVELGNSEEGGLSARAWLPLT 434 (435)
T ss_pred --CCCCCeehhHHHHHHHHHHCCCEEEEEECCCCcEEEEEEEeCC
Confidence 2236999999999999999999999999999999999999964
No 37
>PRK13557 histidine kinase; Provisional
Probab=99.94 E-value=1.7e-25 Score=222.17 Aligned_cols=220 Identities=19% Similarity=0.248 Sum_probs=171.2
Q ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHhcccCccccccChHHHHHHHHHHHHhhHHHHHhHHHHhhhcCCCCCCCcccc
Q 017673 108 RDFTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIGQHVELHNPNPPPHCIGY 187 (368)
Q Consensus 108 ~~~~~~l~~~~~~~~~~l~~i~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~li~~~l~l~~~~~~~~~~~~ 187 (368)
+.+..++..+.|++++|+..+.+.+..+..... ......+.+.+.++.+.....++..++++++.+++... .
T Consensus 161 ~~l~~~~~~i~h~l~~pl~~i~~~~~~l~~~~~--~~~~~~~~~~~~l~~i~~~~~~~~~li~~l~~~~~~~~------~ 232 (540)
T PRK13557 161 EALGQLTGGIAHDFNNLLQVMSGYLDVIQAALS--HPDADRGRMARSVENIRAAAERAATLTQQLLAFARKQR------L 232 (540)
T ss_pred HHhhhhhhhhhHHhhhHHHHHHhHHHHHHHhhc--cCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCC------C
Confidence 445668889999999999999866665543332 11123456667777777777788889999999987521 2
Q ss_pred cccCCCHHHHHHHHHHHHHHHHHhhhCCCCceEEEcCCC-ceeeccchhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEE
Q 017673 188 IDTKMSPVQVARNASEHARCVCLREYGSAPDFNIYGDPS-FTFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIR 266 (368)
Q Consensus 188 ~~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~d~~~l~~vl~nLl~NAi~~~~~~~~~~~~~~~~I~ 266 (368)
....+++..++..+...+... ....+.+.+..+.. ..+.+|+..+.+++.||+.||++|++. ++.|.
T Consensus 233 ~~~~~~l~~~i~~~~~~~~~~----~~~~~~i~~~~~~~~~~~~~d~~~l~~vl~nll~NA~~~~~~--------~~~i~ 300 (540)
T PRK13557 233 EGRVLNLNGLVSGMGELAERT----LGDAVTIETDLAPDLWNCRIDPTQAEVALLNVLINARDAMPE--------GGRVT 300 (540)
T ss_pred CCcccCHHHHHHHHHHHHHHh----cCCCeEEEEecCCCCCceeeCHHHHHHHHHHHHHHHHHhccc--------CCeEE
Confidence 235788888888776654422 12345565555444 348889999999999999999999976 57777
Q ss_pred EEEEe---------------CCCeEEEEEeeeCCCCCCCCcccccccccccCCCCCCcccccccCCCCCCccccChHHHH
Q 017673 267 IIVAD---------------GLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAADKGTMAGYGYGLPISR 331 (368)
Q Consensus 267 i~~~~---------------~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~~~~~~~~~~~g~GlGL~i~k 331 (368)
|.+.. .++.+.|.|.|+|+|||++..+++|++||+++.. ..|+||||++||
T Consensus 301 i~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~G~Gi~~~~~~~if~~~~~~~~~--------------~~g~GlGL~i~~ 366 (540)
T PRK13557 301 IRTRNVEIEDEDLAMYHGLPPGRYVSIAVTDTGSGMPPEILARVMDPFFTTKEE--------------GKGTGLGLSMVY 366 (540)
T ss_pred EEEeeeccCccccccccCCCCCCEEEEEEEcCCCCCCHHHHHhccCCCcccCCC--------------CCCCCccHHHHH
Confidence 77652 4567899999999999999999999999998754 469999999999
Q ss_pred HHHHHhCCeEEEEecCCCceEEEEEeCCCC
Q 017673 332 LYARYFGGDLQIISMEGYGTDAYLHLSRLG 361 (368)
Q Consensus 332 ~iv~~~gG~i~v~s~~g~Gt~f~i~lP~~~ 361 (368)
.+++.|||+|++.|.+|.||+|+|+||...
T Consensus 367 ~~v~~~gG~i~~~s~~~~G~~f~i~lP~~~ 396 (540)
T PRK13557 367 GFAKQSGGAVRIYSEVGEGTTVRLYFPASD 396 (540)
T ss_pred HHHHHCCCEEEEEecCCCceEEEEEeeCCC
Confidence 999999999999999999999999999753
No 38
>COG0642 BaeS Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=99.93 E-value=1.2e-24 Score=201.31 Aligned_cols=219 Identities=19% Similarity=0.229 Sum_probs=172.8
Q ss_pred HHHHHHHHHHhccCchHHHHHHHHHHhcccCccccccChHHHHHHHHHHHHhhHHHHHhHHHHhhhcCCCCCCCcccccc
Q 017673 110 FTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIGQHVELHNPNPPPHCIGYID 189 (368)
Q Consensus 110 ~~~~l~~~~~~~~~~l~~i~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~li~~~l~l~~~~~~~~~~~~~~ 189 (368)
...++..+.|++++|+..+......+... . .......+..+.....++..++++++.+++..... ......
T Consensus 115 ~~~~~~~~~hel~~pl~~i~~~~~~~~~~-~-------~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~ 185 (336)
T COG0642 115 KREFLANISHELRTPLTAIRGLLELLLEG-L-------LDPQRELLEIIEEEAERLLRLVNDLLDLSRLEAGT-KLKLLL 185 (336)
T ss_pred HHHHHHhhhhhhcCcHHHHHHHHHHhccC-C-------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-ccccCC
Confidence 56688889999999999999644433221 1 11144555555556666777899999998873321 122225
Q ss_pred cCCCHHHHHHHHHHHHHHHHHhhhCCCCceEEEcCCCceeeccchhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEEE
Q 017673 190 TKMSPVQVARNASEHARCVCLREYGSAPDFNIYGDPSFTFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIV 269 (368)
Q Consensus 190 ~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~d~~~l~~vl~nLl~NAi~~~~~~~~~~~~~~~~I~i~~ 269 (368)
...++..++.+++..+...+... .+.+....+....+.+|+..+.+++.||++||++|++. +.|.|.+
T Consensus 186 ~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~v~~~~~~l~~vl~nLi~NAi~~~~~---------~~i~i~~ 253 (336)
T COG0642 186 ELVDLAELLEEVVRLLAPLAQEK---GIELAVDLPELPYVLGDPERLRQVLVNLLSNAIKYTPG---------GEITISV 253 (336)
T ss_pred CCcCHHHHHHHHHHHHHHHHHHc---CCEEEEecCCCceEeeCHHHHHHHHHHHHHHHhccCCC---------CeEEEEE
Confidence 67778999999999888776654 45555444345678889999999999999999999862 7899999
Q ss_pred EeCCCeEEEEEeeeCCCCCCCCcccccccccccCCCCCCcccccccCCCCCCccccChHHHHHHHHHhCCeEEEEecCCC
Q 017673 270 ADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAADKGTMAGYGYGLPISRLYARYFGGDLQIISMEGY 349 (368)
Q Consensus 270 ~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~i~v~s~~g~ 349 (368)
...++++.++|.|+|+||+++.++++|++|++++.. ..|+|+||++|+.+++.|||.+.+.+.++.
T Consensus 254 ~~~~~~i~i~V~D~G~Gi~~~~~~~if~~~~~~~~~--------------~~g~GlGL~i~~~~~~~~~g~i~~~~~~~~ 319 (336)
T COG0642 254 RQDDEQVTISVEDTGPGIPEEELERIFEPFFRTDKS--------------RSGTGLGLAIVKRIVELHGGTISVESEPGK 319 (336)
T ss_pred EecCCeEEEEEEcCCCCCCHHHHHHhccCeeccCCC--------------CCCCCccHHHHHHHHHHcCCEEEEEecCCC
Confidence 888889999999999999999999999999999876 239999999999988999999999999988
Q ss_pred ceEEEEEeCCCCCC
Q 017673 350 GTDAYLHLSRLGDS 363 (368)
Q Consensus 350 Gt~f~i~lP~~~~~ 363 (368)
||+|+|++|.....
T Consensus 320 Gt~~~i~lP~~~~~ 333 (336)
T COG0642 320 GTTFTIRLPLAPAA 333 (336)
T ss_pred ceEEEEEEeccccc
Confidence 99999999987543
No 39
>COG4192 Signal transduction histidine kinase regulating phosphoglycerate transport system [Signal transduction mechanisms]
Probab=99.92 E-value=9.5e-24 Score=191.98 Aligned_cols=272 Identities=16% Similarity=0.133 Sum_probs=203.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHhcCCccccCChhHHHHHHHHHHHHHHhhcCCCCCCchhHHHHHHHHHHHHHhccCchHHH
Q 017673 49 SAQFLHKELPIRIARRAIELETLPYGLSEKPAVLKVRDWYLDSFRDLRSFPDIRSTSDERDFTQMIKAIKVRHNNVVPMM 128 (368)
Q Consensus 49 ~~~~~~~~l~~rv~~r~~~l~~~~~~l~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~i 128 (368)
....+.+-+..++.+.+.+|..-+..+.. ++.+-.+. +. .-.....++-+..+....+.-+..++|++..||+.|
T Consensus 395 Ria~llRl~l~~~n~kt~~l~~rnq~L~~--EveeR~e~-ea--~L~~~Q~ELiQaAKlAvVGqTmTslaHEinQPLnAm 469 (673)
T COG4192 395 RIAQLLRLLLQRVNEKTQSLRERNQELQA--EVEERQEA-EA--HLKKTQGELIQAAKLAVVGQTMTSLAHEINQPLNAM 469 (673)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHH--HHHHHHHH-HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHH
Confidence 33445567778888888888776555544 22211100 00 001112333444455666788899999999999999
Q ss_pred HHHHHHHhcccCccccccChHHHHHHHHHHHHhhHHHHHhHHHHhhhcCCCCCCCcccccccCCCHHHHHHHHHHHHHHH
Q 017673 129 ALGLQQLKKEMDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIGQHVELHNPNPPPHCIGYIDTKMSPVQVARNASEHARCV 208 (368)
Q Consensus 129 ~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~li~~~l~l~~~~~~~~~~~~~~~~~~l~~li~~~~~~~~~~ 208 (368)
++++-.-+..+. .........+++.+..-..++..+|+.+.-|+|.......+ .++++.+.+..+.+.+...
T Consensus 470 saYLFsA~~A~e----~~~s~qa~~~L~kie~L~eR~~~Iv~sLRqF~Rk~s~~~~l----qpV~L~~~v~~AweLl~~k 541 (673)
T COG4192 470 SAYLFSARLALE----EAPSAQAATSLDKIENLTERMGKIVNSLRQFARKNSSDESL----QPVRLNSVVEQAWELLQTK 541 (673)
T ss_pred HHHHHHHHHHHh----hCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCc----ccccHHHHHHHHHHHHHhh
Confidence 988733333333 23455677777777666667888999999999983322223 4899999999999988776
Q ss_pred HHhhhCCCCceEEEcCCCceeeccchhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEEEEe-CCCeEEEEEeeeCCCC
Q 017673 209 CLREYGSAPDFNIYGDPSFTFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVAD-GLEDVTIKVSDEGGGI 287 (368)
Q Consensus 209 ~~~~~~~~~~i~~~~~~~~~~~~d~~~l~~vl~nLl~NAi~~~~~~~~~~~~~~~~I~i~~~~-~~~~~~i~V~D~G~Gi 287 (368)
...+ .+.+.... ++++|.+|.-.++||+.|++-||++++... .+-|.|.+.. .++..++.|.|+|+|.
T Consensus 542 hk~r---Q~~Li~pt-D~~~V~gd~v~ieQVlvNl~~NaldA~~h~-------~p~i~~~~~~~~~e~l~i~i~DnGqGw 610 (673)
T COG4192 542 HKRR---QIKLINPT-DDLMVMGDAVSIEQVLVNLIVNALDASTHF-------APWIKLIALGTEQEMLRIAIIDNGQGW 610 (673)
T ss_pred hhhc---cccccCCc-ccceecchhhhHHHHHHHHHHHHHhhhccC-------CceEEEEeecCcccceEEEEecCCCCC
Confidence 6655 33433322 457899999999999999999999998762 3678888755 6778999999999999
Q ss_pred CCCCcccccccccccCCCCCCcccccccCCCCCCccccChHHHHHHHHHhCCeEEEEecCCCceEEEEEeCCC
Q 017673 288 PRSGLPKIFTYLYSTARNPLDENTDLAADKGTMAGYGYGLPISRLYARYFGGDLQIISMEGYGTDAYLHLSRL 360 (368)
Q Consensus 288 ~~~~~~~if~~f~~~~~~~~~~~~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~i~v~s~~g~Gt~f~i~lP~~ 360 (368)
|.+..+++|.||.++|.. |.|+||+||..+++.+.|++.+.|.-.+|+++.+.|...
T Consensus 611 p~~l~dkLl~PFttsK~v----------------gLGlGLSIsqSlmeqmqG~l~lAStLt~nA~ViL~f~v~ 667 (673)
T COG4192 611 PHELVDKLLTPFTTSKEV----------------GLGLGLSISQSLMEQMQGRLALASTLTKNAMVILEFQVD 667 (673)
T ss_pred chhHHHHhcCCccccccc----------------ccccchhHHHHHHHHhcCcchHhhhcccCcEEEEEEeec
Confidence 999999999999999977 999999999999999999999999999999999999765
No 40
>PRK11086 sensory histidine kinase DcuS; Provisional
Probab=99.91 E-value=2.3e-23 Score=207.22 Aligned_cols=125 Identities=24% Similarity=0.300 Sum_probs=107.1
Q ss_pred CCceEEEcCCCceeeccc---hhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEEEEeCCCeEEEEEeeeCCCCCCCCc
Q 017673 216 APDFNIYGDPSFTFPYVP---SHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGL 292 (368)
Q Consensus 216 ~~~i~~~~~~~~~~~~d~---~~l~~vl~nLl~NAi~~~~~~~~~~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~ 292 (368)
.+.+.+..+..++...++ ..|.+++.||++||++|+.... ++.|.|++...++.+.|.|+|+|+|||++.+
T Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~l~~vl~nLl~NAi~~~~~~~------~~~I~i~~~~~~~~~~i~V~D~G~gi~~~~~ 484 (542)
T PRK11086 411 GITLIISEDSQLPDSGDEDQVHELITILGNLIENALEAVGGEE------GGEISVSLHYRNGWLHCEVSDDGPGIAPDEI 484 (542)
T ss_pred CCEEEEeCCCCCCcccccccHHHHHHHHHHHHHHHHHHhhcCC------CcEEEEEEEEcCCEEEEEEEECCCCCCHHHH
Confidence 566666655544443333 4699999999999999986421 4789999998999999999999999999999
Q ss_pred ccccccccccCCCCCCcccccccCCCCCCccccChHHHHHHHHHhCCeEEEEecCCCceEEEEEeCCCCC
Q 017673 293 PKIFTYLYSTARNPLDENTDLAADKGTMAGYGYGLPISRLYARYFGGDLQIISMEGYGTDAYLHLSRLGD 362 (368)
Q Consensus 293 ~~if~~f~~~~~~~~~~~~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~i~v~s~~g~Gt~f~i~lP~~~~ 362 (368)
+++|++||+++.. |+|+||++||.+++.|||+++++|.+|.||+|+|+||....
T Consensus 485 ~~iF~~~~~~~~~----------------g~GlGL~iv~~iv~~~~G~i~v~s~~~~G~~f~i~lP~~~~ 538 (542)
T PRK11086 485 DAIFDKGYSTKGS----------------NRGVGLYLVKQSVENLGGSIAVESEPGVGTQFFVQIPWDGE 538 (542)
T ss_pred HHHHhCCCccCCC----------------CCcCcHHHHHHHHHHcCCEEEEEeCCCCcEEEEEEEeCCCC
Confidence 9999999988755 99999999999999999999999999999999999998644
No 41
>PRK15053 dpiB sensor histidine kinase DpiB; Provisional
Probab=99.91 E-value=4.9e-23 Score=205.18 Aligned_cols=204 Identities=20% Similarity=0.215 Sum_probs=143.7
Q ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHhcccCccccccChHHHHHHHHHHHHhhHHHHHhHHHHhhhcCCCCCCCcccc
Q 017673 108 RDFTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIGQHVELHNPNPPPHCIGY 187 (368)
Q Consensus 108 ~~~~~~l~~~~~~~~~~l~~i~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~li~~~l~l~~~~~~~~~~~~ 187 (368)
+.+.+.+..+.|++++++..+.+.++ +. ...+.++.+......+..+++.+......
T Consensus 336 ~~~~e~l~~~~he~~n~L~~i~g~l~-~~-------------~~~~~~~~i~~~s~~~~~l~~~l~~~~~~--------- 392 (545)
T PRK15053 336 KQYVESLRTLRHEHLNWMSTLNGLLQ-MK-------------EYDRVLEMVQGESQAQQQLIDSLREAFAD--------- 392 (545)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHh-hc-------------hhhHHHHHHHHHHHHHHHHHHHHHHhccc---------
Confidence 44566778889999999998884433 21 11223333333444455556655543221
Q ss_pred cccCCCHHHHHHHHHHHHHHHHHhhhCCCCceEEEcCCC---ceeeccchhHHHHHHHHHHHHHHHHHHhhcCCCCCCCC
Q 017673 188 IDTKMSPVQVARNASEHARCVCLREYGSAPDFNIYGDPS---FTFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPP 264 (368)
Q Consensus 188 ~~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~~~d~~~l~~vl~nLl~NAi~~~~~~~~~~~~~~~~ 264 (368)
..+...+.... ..+... .+.+.+..+.. ++...|+..|.+++.||++||++|+.... .+++.
T Consensus 393 -------~~~~~~l~~~~-~~~~~~---~i~~~~~~~~~~~~l~~~~~~~~l~~vl~nLl~NAi~~~~~~~----~~~~~ 457 (545)
T PRK15053 393 -------RQVAGLLFGKV-QRAREL---GLKMVIVPGSQLSQLPPGLDSTEFAAIVGNLLDNAFEASLRSD----EGNKI 457 (545)
T ss_pred -------HHHHHHHHHHH-HHHHHh---CCceEEcCCCccccccccCCHHHHHHHHHHHHHHHHHHHhhCC----CCCce
Confidence 11111111111 122222 45555543322 45677899999999999999999975311 01367
Q ss_pred EEEEEEeCCCeEEEEEeeeCCCCCCCCcccccccccccCCCCCCcccccccCCCCCCccccChHHHHHHHHHhCCeEEEE
Q 017673 265 IRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAADKGTMAGYGYGLPISRLYARYFGGDLQII 344 (368)
Q Consensus 265 I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~i~v~ 344 (368)
|.|.+...++.+.|.|.|+|+|||++..+++|++||+++.. ..+|+|+||++||.+++.|||+|+++
T Consensus 458 i~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~iF~~~~~tk~~-------------~~~g~GlGL~ivk~iv~~~~G~i~v~ 524 (545)
T PRK15053 458 VELFLSDEGDDVVIEVADQGCGVPESLRDKIFEQGVSTRAD-------------EPGEHGIGLYLIASYVTRCGGVITLE 524 (545)
T ss_pred EEEEEEECCCEEEEEEEeCCCCcCHHHHHHHhCCCCCCCCC-------------CCCCceeCHHHHHHHHHHcCCEEEEE
Confidence 99999888889999999999999999999999999998754 12479999999999999999999999
Q ss_pred ecCCCceEEEEEeCCCCC
Q 017673 345 SMEGYGTDAYLHLSRLGD 362 (368)
Q Consensus 345 s~~g~Gt~f~i~lP~~~~ 362 (368)
|.+|.||+|+|.||....
T Consensus 525 s~~~~Gt~f~i~lP~~~~ 542 (545)
T PRK15053 525 DNDPCGTLFSIFIPKVKP 542 (545)
T ss_pred ECCCCeEEEEEEECCCCC
Confidence 999999999999998654
No 42
>COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms]
Probab=99.89 E-value=4.6e-22 Score=186.71 Aligned_cols=207 Identities=20% Similarity=0.275 Sum_probs=149.8
Q ss_pred CchhHHHHHHHHHHHHHhccCchHHHHHHHHHHhcccCccccccChHHHHHHHHHHHHhhHHHHHhHHHHhhhcCCCCCC
Q 017673 103 STSDERDFTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIGQHVELHNPNPPP 182 (368)
Q Consensus 103 ~~~~~~~~~~~l~~~~~~~~~~l~~i~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~li~~~l~l~~~~~~~ 182 (368)
++..-+++.+.++...||+.|.|..|. |+-++. ..++...++........ ..++.+..-.+.
T Consensus 326 qLt~vr~ya~aLRaq~HEfmNkLhtI~-GLlql~----------~yd~a~~~I~~~~~~qq---~~~~~l~~~i~~---- 387 (537)
T COG3290 326 QLTGVRQYAEALRAQSHEFMNKLHTIL-GLLQLG----------EYDDALDYIQQESEEQQ---ELIDSLSEKIKD---- 387 (537)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHH-HHHhhc----------cHHHHHHHHHHHHhhhh---hhHHHHHHhccc----
Confidence 333447889999999999999999999 554444 23355555554332111 112221111111
Q ss_pred CcccccccCCCHHHHHHHHHHHHHHHHHhhhCCCCceEEEcCCC---ceeeccchhHHHHHHHHHHHHHHHHHHhhcCCC
Q 017673 183 HCIGYIDTKMSPVQVARNASEHARCVCLREYGSAPDFNIYGDPS---FTFPYVPSHLHLMVFELVKNSLRAVEERYMDSD 259 (368)
Q Consensus 183 ~~~~~~~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~~~d~~~l~~vl~nLl~NAi~~~~~~~~~~~ 259 (368)
--++-++=.-... +++. ++.+.++.+.. .+-..++..+--++.|||+||+++....
T Consensus 388 ---------~~lAg~LlgK~~r----ArEl---gv~l~Id~~S~l~~~p~~~~~~~litIlGNLidNA~eA~~~~----- 446 (537)
T COG3290 388 ---------PVLAGFLLGKISR----AREL---GVSLIIDPNSQLPQLPSELQPHDLVTILGNLIDNALEALLAP----- 446 (537)
T ss_pred ---------HHHHHHHHhHHHH----HHHc---CceEEEcCCCcCCCCCCccChHHHHHHHHHHHHHHHHHhhcc-----
Confidence 1122222222222 2333 66666665433 3355677789999999999999999731
Q ss_pred CCCCCEEEEEEeCCCeEEEEEeeeCCCCCCCCcccccccccccCCCCCCcccccccCCCCCCccccChHHHHHHHHHhCC
Q 017673 260 KVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAADKGTMAGYGYGLPISRLYARYFGG 339 (368)
Q Consensus 260 ~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~~~~~~~~~~~g~GlGL~i~k~iv~~~gG 339 (368)
.++..|.+++..+++.+.++|.|+|||||++..+++|+..|+++.. .+.|+||++||++++.+||
T Consensus 447 ~~~k~I~l~i~~~~~~lvieV~D~G~GI~~~~~~~iFe~G~Stk~~---------------~~rGiGL~Lvkq~V~~~~G 511 (537)
T COG3290 447 EENKEIELSLSDRGDELVIEVADTGPGIPPEVRDKIFEKGVSTKNT---------------GGRGIGLYLVKQLVERLGG 511 (537)
T ss_pred CCCcEEEEEEEecCCEEEEEEeCCCCCCChHHHHHHHhcCccccCC---------------CCCchhHHHHHHHHHHcCc
Confidence 1157899999999999999999999999999999999999999973 4999999999999999999
Q ss_pred eEEEEecCCCceEEEEEeCCCCCC
Q 017673 340 DLQIISMEGYGTDAYLHLSRLGDS 363 (368)
Q Consensus 340 ~i~v~s~~g~Gt~f~i~lP~~~~~ 363 (368)
.|+++|..+.||+|+|++|..++.
T Consensus 512 ~I~~~s~~~~Gt~F~i~iP~~~~~ 535 (537)
T COG3290 512 SIEVESEKGQGTRFSIYIPKVKER 535 (537)
T ss_pred eEEEeeCCCCceEEEEECCCCccc
Confidence 999999999999999999988654
No 43
>PRK13560 hypothetical protein; Provisional
Probab=99.89 E-value=9.9e-22 Score=204.37 Aligned_cols=201 Identities=14% Similarity=0.099 Sum_probs=135.9
Q ss_pred HHHHHHHHHHHhccCchHHHHHHHHHHhcccCccccccChHHHHHHHHHHHHhhHHHHHhHHHHhhhcCCCCCCCccccc
Q 017673 109 DFTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIGQHVELHNPNPPPHCIGYI 188 (368)
Q Consensus 109 ~~~~~l~~~~~~~~~~l~~i~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~li~~~l~l~~~~~~~~~~~~~ 188 (368)
+...++..++|+++|||+.|.+.+..+...+. .+....++.........+..+...+ .+.. .
T Consensus 604 ~~~~~l~~isHelrnpL~~I~~~~~l~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~l---~~~~--------~ 665 (807)
T PRK13560 604 EKEVLLKEIHHRVKNNLQIISSLLDLQAEKLH-------DEEAKCAFAESQDRICAMALAHEKL---YQSE--------D 665 (807)
T ss_pred HHHHHHHHhHHHHhChHHHHHHHHHHhhhhcC-------CHHHHHHHHHHHHHHHHHHHHHHHH---hccc--------c
Confidence 35678999999999999999865554444433 1223333333222111222222222 2221 1
Q ss_pred ccCCCHHHHHHHHHHHHHHHHHhhhCCCCceEEEcCCCceeeccchhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEE
Q 017673 189 DTKMSPVQVARNASEHARCVCLREYGSAPDFNIYGDPSFTFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRII 268 (368)
Q Consensus 189 ~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~d~~~l~~vl~nLl~NAi~~~~~~~~~~~~~~~~I~i~ 268 (368)
...+++..++++++..+...+... ...+.+.+..+.......+...+.+||.||+.||+||+.+.. ..+.|.|+
T Consensus 666 ~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~il~NLl~NAik~~~~~~-----~~~~i~i~ 739 (807)
T PRK13560 666 LADIDFLDYIESLTAHLKNSFAID-FGRIDCKIDADDGCLDIDKAIPCGLIISELLSNALKHAFPDG-----AAGNIKVE 739 (807)
T ss_pred chhccHHHHHHHHHHHHHHHhccc-cCceEEEEecCccccccccccchHHHHHHHHHHHHHhhccCC-----CCceEEEE
Confidence 247889999999988877655443 112334444333222334455688899999999999986521 13678988
Q ss_pred EEeC-CCeEEEEEeeeCCCCCCCCcccccccccccCCCCCCcccccccCCCCCCccccChHHHHHHHHHhCCeEEEEecC
Q 017673 269 VADG-LEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAADKGTMAGYGYGLPISRLYARYFGGDLQIISME 347 (368)
Q Consensus 269 ~~~~-~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~i~v~s~~ 347 (368)
+... ++.+.|.|+|+|+|||++.. . ..|.||||+|||.+|+.|||+|+++|.
T Consensus 740 ~~~~~~~~v~i~V~D~G~GI~~~~~----------~----------------~~~~gLGLai~~~iv~~~gG~I~v~S~- 792 (807)
T PRK13560 740 IREQGDGMVNLCVADDGIGLPAGFD----------F----------------RAAETLGLQLVCALVKQLDGEIALDSR- 792 (807)
T ss_pred EEEcCCCEEEEEEEeCCCcCCcccc----------c----------------cccCCccHHHHHHHHHHcCCEEEEEcC-
Confidence 8776 67899999999999998731 0 137889999999999999999999994
Q ss_pred CCceEEEEEeCCCC
Q 017673 348 GYGTDAYLHLSRLG 361 (368)
Q Consensus 348 g~Gt~f~i~lP~~~ 361 (368)
+||+|+|+||..+
T Consensus 793 -~Gt~F~i~lP~~~ 805 (807)
T PRK13560 793 -GGARFNIRFPMSP 805 (807)
T ss_pred -CceEEEEEecCCC
Confidence 6999999999753
No 44
>PRK11644 sensory histidine kinase UhpB; Provisional
Probab=99.88 E-value=4.8e-21 Score=187.46 Aligned_cols=191 Identities=15% Similarity=0.135 Sum_probs=141.3
Q ss_pred HHHHHHHHHHhccCchHHHHHHHHHHhcccCccccccChHHHHHHHHHHHHhhHHHHHhHHHHhhhcCCCCCCCcccccc
Q 017673 110 FTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIGQHVELHNPNPPPHCIGYID 189 (368)
Q Consensus 110 ~~~~l~~~~~~~~~~l~~i~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~li~~~l~l~~~~~~~~~~~~~~ 189 (368)
..++.+.++|++++|++.+......++.... ..++..+..+.+.....++...+.+++...+.. ..
T Consensus 302 r~~ia~elhdeI~~pLtaI~~~a~ll~~~~~------~~~~~~~~~~~I~~~~~~l~~~vr~LL~~lr~~--------~l 367 (495)
T PRK11644 302 RRDVARELHDEIGQTITAIRTQAGIIKRLAA------DNASVKQSAQLIEQLSLGVYDTVRRLLGRLRPR--------QL 367 (495)
T ss_pred HHHHHHHhhhhhhhHHHHHHHHHHHHHhhcc------CChHHHHHHHHHHHHHHHHHHHHHHHHhccCCc--------cc
Confidence 3457788889999999999755544433211 123344455555555555666777777655541 12
Q ss_pred cCCCHHHHHHHHHHHHHHHHHhhhCCCCceEEE--cCCCceeeccchhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEE
Q 017673 190 TKMSPVQVARNASEHARCVCLREYGSAPDFNIY--GDPSFTFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRI 267 (368)
Q Consensus 190 ~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~~~--~~~~~~~~~d~~~l~~vl~nLl~NAi~~~~~~~~~~~~~~~~I~i 267 (368)
+.+++.+.+++++..+..... +..++++ .+.......++..+.+++.|++.||+||++. +.|.|
T Consensus 368 ~~~~L~~~l~~l~~~l~~~~~-----~~~v~l~~~~~~~~l~~~~~~~L~ril~nlL~NAiKha~~---------~~I~I 433 (495)
T PRK11644 368 DDLTLEQAIRSLMREMELEDR-----GIVSHLDWRIDESALSETQRVTLFRVCQEGLNNIVKHADA---------SAVTL 433 (495)
T ss_pred ccCCHHHHHHHHHHHHHHhhc-----CceEEEEecCCcccCChhHHHHHHHHHHHHHHHHHHhCCC---------CEEEE
Confidence 468899998888877653221 3344443 4443445566778999999999999999754 67999
Q ss_pred EEEeCCCeEEEEEeeeCCCCCCCCcccccccccccCCCCCCcccccccCCCCCCccccChHHHHHHHHHhCCeEEEEecC
Q 017673 268 IVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAADKGTMAGYGYGLPISRLYARYFGGDLQIISME 347 (368)
Q Consensus 268 ~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~i~v~s~~ 347 (368)
++..+++.+.++|+|+|+|||++. .|.|+||+++|++++.|||+++++|
T Consensus 434 ~l~~~~~~i~l~V~DnG~Gi~~~~-----------------------------~~~GLGL~ivr~iv~~~GG~i~v~S-- 482 (495)
T PRK11644 434 QGWQQDERLMLVIEDDGSGLPPGS-----------------------------GQQGFGLRGMRERVTALGGTLTISC-- 482 (495)
T ss_pred EEEEcCCEEEEEEEECCCCCCcCC-----------------------------CCCCCcHHHHHHHHHHcCCEEEEEc--
Confidence 998888999999999999999762 3789999999999999999999999
Q ss_pred CCceEEEEEeCC
Q 017673 348 GYGTDAYLHLSR 359 (368)
Q Consensus 348 g~Gt~f~i~lP~ 359 (368)
+.||+|+|.+|.
T Consensus 483 ~~Gt~f~I~LP~ 494 (495)
T PRK11644 483 THGTRLSVSLPQ 494 (495)
T ss_pred CCCEEEEEEEeC
Confidence 679999999996
No 45
>PF02518 HATPase_c: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; InterPro: IPR003594 This domain is found in several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases [], heat shock protein HSP90 [, , ], phytochrome-like ATPases and DNA mismatch repair proteins. The fold of this domain consists of two layers, alpha/beta, which contains an 8-stranded mixed beta-sheet. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0005524 ATP binding; PDB: 3JZ3_A 3DGE_A 2C2A_A 2BU5_A 2BU8_A 2BU6_A 2BU7_A 2BU2_A 2BTZ_A 3K99_D ....
Probab=99.88 E-value=6.7e-23 Score=160.29 Aligned_cols=110 Identities=31% Similarity=0.521 Sum_probs=101.7
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEEEEeCCCeEEEEEeeeCCCCCCCCcccccccccccCCCCCCcc
Q 017673 231 YVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDEN 310 (368)
Q Consensus 231 ~d~~~l~~vl~nLl~NAi~~~~~~~~~~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~ 310 (368)
+|+..|.+++.||+.||++|+++ ++.|.|.+...++++.|.|.|+|+|||++.++++|++|++.+..
T Consensus 1 gd~~~l~~il~~ll~Na~~~~~~--------~~~I~i~~~~~~~~~~i~i~d~G~gi~~~~l~~~~~~~~~~~~~----- 67 (111)
T PF02518_consen 1 GDPDRLRQILSELLDNAIKHSPE--------GGKIDITIEEDDDHLSIEISDNGVGIPPEELEKLFEPFFTSDKS----- 67 (111)
T ss_dssp ETHHHHHHHHHHHHHHHHHHHHH--------TSEEEEEEEEETTEEEEEEEESSSSTTHHHHHHHCSTTSHSSSS-----
T ss_pred CcHHHHHHHHHHHHHHHHHHhcC--------CCEEEEEEEEecCeEEEEEEeccccccccccccchhhccccccc-----
Confidence 58899999999999999999998 58999999999999999999999999999999999999988753
Q ss_pred cccccCCCCCCccccChHHHHHHHHHhCCeEEEEecCCCceEEEEEeCC
Q 017673 311 TDLAADKGTMAGYGYGLPISRLYARYFGGDLQIISMEGYGTDAYLHLSR 359 (368)
Q Consensus 311 ~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~i~v~s~~g~Gt~f~i~lP~ 359 (368)
....+|.|+||++|+.+++.|+|++++.+.+++||+|++.+|.
T Consensus 68 ------~~~~~g~GlGL~~~~~~~~~~~g~l~~~~~~~~gt~v~~~~p~ 110 (111)
T PF02518_consen 68 ------ETSISGHGLGLYIVKQIAERHGGELTIESSEGGGTTVTFTLPL 110 (111)
T ss_dssp ------SGGSSSSSHHHHHHHHHHHHTTEEEEEEEETTTEEEEEEEEEG
T ss_pred ------ccccCCCChHHHHHHHHHHHCCCEEEEEEcCCCcEEEEEEEEC
Confidence 2224689999999999999999999999999999999999995
No 46
>PF10436 BCDHK_Adom3: Mitochondrial branched-chain alpha-ketoacid dehydrogenase kinase; InterPro: IPR018955 Catabolism and synthesis of leucine, isoleucine and valine are finely balanced, allowing the body to make the most of dietary input but removing excesses to prevent toxic build-up of their corresponding keto-acids. Regulating the activity of the branched-chain alpha-ketoacid dehydrogenase (BCDH) complex is the primary means by which these processes are coordinated. BCDH kinase regulates BCDH by phosphorylation, thereby inactivating it when synthesis is required. Pyruvate dehydrogenase kinase inhibits the pyruvate dehydrogenase complex by phosphorylation of the E1 alpha subunit, thus contributing to the regulation of glucose metabolism. It is also involved in telomere maintenance. This entry is associated with IPR003594 from INTERPRO which is found towards the C terminus. ; PDB: 1GKX_A 1GJV_A 1GKZ_A 1JM6_B 3CRL_B 3CRK_B 1Y8O_A 2PNR_A 1Y8P_A 1Y8N_A ....
Probab=99.86 E-value=1.8e-20 Score=154.85 Aligned_cols=159 Identities=47% Similarity=0.830 Sum_probs=141.4
Q ss_pred CCcCHHHHHhcCCCCChHHHHHHHHHHHHHhHHHHHHHHHHHhcCCccccCChhHHHHHHHHHHHHHHhhcCCCCCCchh
Q 017673 27 TGVSLRYMMEFGSKPTDKNLLISAQFLHKELPIRIARRAIELETLPYGLSEKPAVLKVRDWYLDSFRDLRSFPDIRSTSD 106 (368)
Q Consensus 27 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~rv~~r~~~l~~~~~~l~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~ 106 (368)
.|+|+++|+.||.+++.+.++.++++++.||+.|+|+|+++++.+|+.+..||.+..+++||.++|++++..+.++..++
T Consensus 1 tplSL~~L~~fg~~~~~~~l~~sa~fl~~ELpvRlA~ri~~l~~LP~~l~~~p~i~~V~~~Y~~sF~~L~~~~~~~~~~~ 80 (164)
T PF10436_consen 1 TPLSLKQLLQFGRNPTEETLLQSAQFLRRELPVRLAHRIRELQNLPYILVSNPSIQQVYEWYLQSFEELRSFPPPKTLED 80 (164)
T ss_dssp --EBHHHHHHHHCTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-HHHHTSHHHHHHHHHHHHHHHHHHTTSTTTSCCH
T ss_pred CCcCHHHHHHhCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHhCChhhccChhHHHHHHHHHHHHHHHHhcCCCCCHHH
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccCchHHHHHHHHHHhcccCccccccChHHHHHHHHHHHHhhHHHHHhHHHHhhhcCCCC---CCC
Q 017673 107 ERDFTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIGQHVELHNPNP---PPH 183 (368)
Q Consensus 107 ~~~~~~~l~~~~~~~~~~l~~i~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~li~~~l~l~~~~~---~~~ 183 (368)
+.+|++++..+..++.+.+..++.|+.|++.... -....+.++.+|++++.+++++|.|+++++.++.... .++
T Consensus 81 ~~~F~~~l~~i~~~H~~vv~~lA~G~~E~~~~~~---~~~~~~~i~~fLd~f~~sRIgiR~L~~qHlaL~~~~~~~~~~~ 157 (164)
T PF10436_consen 81 NEKFTELLERILDRHSDVVPTLAQGVLELKKYLQ---SSESEEQIQSFLDRFYRSRIGIRMLAEQHLALSEQSLNPSKPN 157 (164)
T ss_dssp HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSSSSSSTT
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhc---ccccHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCccCCCCCC
Confidence 9999999999999999999999999999998871 0113569999999999999999999999999965421 256
Q ss_pred ccccc
Q 017673 184 CIGYI 188 (368)
Q Consensus 184 ~~~~~ 188 (368)
++|..
T Consensus 158 ~vG~I 162 (164)
T PF10436_consen 158 YVGII 162 (164)
T ss_dssp SBTTB
T ss_pred eeeee
Confidence 66644
No 47
>PRK13559 hypothetical protein; Provisional
Probab=99.82 E-value=6.2e-19 Score=166.65 Aligned_cols=187 Identities=14% Similarity=0.122 Sum_probs=132.7
Q ss_pred HHHHHHHHHHhccCchHHHHHHHHHHhcccCccccccChHHHHHHHHHHHHhhHHHHHhHHHHhhhcCCCCCCCcccccc
Q 017673 110 FTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIGQHVELHNPNPPPHCIGYID 189 (368)
Q Consensus 110 ~~~~l~~~~~~~~~~l~~i~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~li~~~l~l~~~~~~~~~~~~~~ 189 (368)
..+++..++|+++|||+.+.+.+ ++..... ....+++.+......+..+++++++..+.
T Consensus 170 ~~~l~~~l~H~~~n~L~~i~~~~-~l~~~~~---------~~~~~~~~i~~~~~~l~~~~~~ll~~~~~----------- 228 (361)
T PRK13559 170 ERRLAREVDHRSKNVFAVVDSIV-RLTGRAD---------DPSLYAAAIQERVQALARAHETLLDERGW----------- 228 (361)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHH-HhhccCC---------CHHHHHHHHHHHHHHHHHHHHHHhccCCc-----------
Confidence 45688899999999999987444 3332111 22334444444444455566676655432
Q ss_pred cCCCHHHHHHHHHHHHHHHHHhhhCCCCceEEEcCCCceeecc-chhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEE
Q 017673 190 TKMSPVQVARNASEHARCVCLREYGSAPDFNIYGDPSFTFPYV-PSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRII 268 (368)
Q Consensus 190 ~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~d-~~~l~~vl~nLl~NAi~~~~~~~~~~~~~~~~I~i~ 268 (368)
..+++.++++.++..+... ...+.+..+ ++.+..+ ...|.+||.||+.||+||.... .+++.|.|.
T Consensus 229 ~~v~l~~~~~~~~~~~~~~-------~~~i~~~~~-~~~~~~~~~~~l~~vl~nLi~NA~k~~~~~-----~~~g~i~v~ 295 (361)
T PRK13559 229 ETVEVEELIRAQVAPYAPR-------ATRVAFEGP-GIRLGAASVQPLGLVLHELAVNAIKHGALS-----ADQGRISIS 295 (361)
T ss_pred CcccHHHHHHHHHHhhcCC-------CceEEEECC-CeeeCHHHHHHHHHHHHHHHHhHHHhcccc-----CCCcEEEEE
Confidence 4789999998887765321 345555542 3344333 3469999999999999994210 115889999
Q ss_pred E--EeCCCeEEEEEeeeCCCCCCCCcccccccccccCCCCCCcccccccCCCCCCccccChHHHHHHHHH-hCCeEEEEe
Q 017673 269 V--ADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAADKGTMAGYGYGLPISRLYARY-FGGDLQIIS 345 (368)
Q Consensus 269 ~--~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~~~~~~~~~~~g~GlGL~i~k~iv~~-~gG~i~v~s 345 (368)
+ ...++.+.+.|.|+|+|++++. .|+|+||.+|+.+++. |||++++.+
T Consensus 296 ~~~~~~~~~~~i~v~d~G~~~~~~~-----------------------------~~~g~Gl~i~~~~v~~~~gG~i~~~~ 346 (361)
T PRK13559 296 WKPSPEGAGFRIDWQEQGGPTPPKL-----------------------------AKRGFGTVIIGAMVESQLNGQLEKTW 346 (361)
T ss_pred EEecCCCCeEEEEEECCCCCCCCCC-----------------------------CCCCcHHHHHHHHHHHHcCCeEEEEE
Confidence 8 6678889999999999987652 3889999999999987 999999999
Q ss_pred cCCCceEEEEEeCCC
Q 017673 346 MEGYGTDAYLHLSRL 360 (368)
Q Consensus 346 ~~g~Gt~f~i~lP~~ 360 (368)
.+ .||+|+++||..
T Consensus 347 ~~-~G~~~~l~~P~~ 360 (361)
T PRK13559 347 SD-DGLLARIEIPSR 360 (361)
T ss_pred cC-CeEEEEEEEeCC
Confidence 74 599999999953
No 48
>PRK10600 nitrate/nitrite sensor protein NarX; Provisional
Probab=99.80 E-value=8.9e-18 Score=168.11 Aligned_cols=160 Identities=18% Similarity=0.184 Sum_probs=118.8
Q ss_pred HHHHHHHHHHHHhhHHHHHhHHHHhhhcCCCCCCCcccccccCCCHHHHHHHHHHHHHHHHHhhhCCCCceEEEcCCC-c
Q 017673 149 DEIHQFLDRFYMSRIGIRMLIGQHVELHNPNPPPHCIGYIDTKMSPVQVARNASEHARCVCLREYGSAPDFNIYGDPS-F 227 (368)
Q Consensus 149 ~~~~~~l~~~~~~~~~~~~li~~~l~l~~~~~~~~~~~~~~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~ 227 (368)
+...+.+..+......+...+.+++..++.. ....++.+.++.++..+.... ...+.+..+.+ .
T Consensus 396 ~~~~~~l~~i~~~~~~~~~~lr~ll~~~r~~---------~~~~~l~~~l~~~~~~~~~~~------~~~i~~~~~~~~~ 460 (569)
T PRK10600 396 ESSRELLSQIRNELNASWRQLRELLTTFRLQ---------LTEPGLRPALEASCEEFSARF------GFPVKLDYQLPPR 460 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCcC---------cccCCHHHHHHHHHHHHHHHh------CCeEEEEecCCcc
Confidence 3445555555554455555677777766652 235788888888887765432 23344443222 2
Q ss_pred eee-ccchhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEEEEeCCCeEEEEEeeeCCCCCCCCcccccccccccCCCC
Q 017673 228 TFP-YVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNP 306 (368)
Q Consensus 228 ~~~-~d~~~l~~vl~nLl~NAi~~~~~~~~~~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~ 306 (368)
.+. .++..+.+++.|++.||+||++. +.|.|.+...++.+.|.|.|+|+|||++.
T Consensus 461 ~~~~~~~~~l~~il~ell~NA~kha~a---------~~i~V~~~~~~~~~~l~V~D~G~Gi~~~~--------------- 516 (569)
T PRK10600 461 LVPSHQAIHLLQIAREALSNALKHAQA---------SEVVVTVAQNQNQVKLSVQDNGCGVPENA--------------- 516 (569)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHhCCC---------CeEEEEEEEcCCEEEEEEEECCCCCCccc---------------
Confidence 222 33456999999999999999754 67999998888999999999999999863
Q ss_pred CCcccccccCCCCCCccccChHHHHHHHHHhCCeEEEEecCCCceEEEEEeCCC
Q 017673 307 LDENTDLAADKGTMAGYGYGLPISRLYARYFGGDLQIISMEGYGTDAYLHLSRL 360 (368)
Q Consensus 307 ~~~~~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~i~v~s~~g~Gt~f~i~lP~~ 360 (368)
..+.|+||++|+.+++.|||++++.|.+|+||+|+|+||..
T Consensus 517 -------------~~~~glGL~i~~~~~~~lgG~l~i~s~~~~Gt~v~i~lp~~ 557 (569)
T PRK10600 517 -------------ERSNHYGLIIMRDRAQSLRGDCRVRRRESGGTEVVVTFIPE 557 (569)
T ss_pred -------------cCCCCccHHHHHHHHHHcCCEEEEEECCCCCEEEEEEEecC
Confidence 12779999999999999999999999999999999999975
No 49
>PRK10935 nitrate/nitrite sensor protein NarQ; Provisional
Probab=99.80 E-value=7e-18 Score=168.85 Aligned_cols=191 Identities=17% Similarity=0.166 Sum_probs=129.1
Q ss_pred HHHHHhccCchHHHHHHHH----HHhcccCccccccChHHHHHHHHHHHHhhHHHHHhHHHHhhhcCCCCCCCccccccc
Q 017673 115 KAIKVRHNNVVPMMALGLQ----QLKKEMDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIGQHVELHNPNPPPHCIGYIDT 190 (368)
Q Consensus 115 ~~~~~~~~~~l~~i~~~~~----~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~li~~~l~l~~~~~~~~~~~~~~~ 190 (368)
..++|++++|+..+...+. .+...+. ...+.....+..+..........+.+++...+. ...
T Consensus 365 ~~la~el~~~l~~~l~~~~~~~~~l~~~~~-----~~~~~~~~~l~~~~~~~~~~~~~l~~l~~~~~~---------~~~ 430 (565)
T PRK10935 365 ATIARELHDSLAQVLSYLKIQLTLLKRSLD-----EDNAKAQSIIAEFDQALSDAYRQLRELLTTFRL---------TIQ 430 (565)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHHhcc-----cChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC---------CCC
Confidence 4466777777766653332 1222222 223444444444333333333344555544433 124
Q ss_pred CCCHHHHHHHHHHHHHHHHHhhhCCCCceEEEcC--CCceeeccchhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEE
Q 017673 191 KMSPVQVARNASEHARCVCLREYGSAPDFNIYGD--PSFTFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRII 268 (368)
Q Consensus 191 ~~~l~~li~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~~d~~~l~~vl~nLl~NAi~~~~~~~~~~~~~~~~I~i~ 268 (368)
.+++.+.+..++..+... . ...+.+..+ .......++..+.+++.|++.||++|++. +.|.|.
T Consensus 431 ~~~l~~~l~~~~~~~~~~----~--~~~i~~~~~~~~~~~~~~~~~~l~qv~~nll~NA~k~~~~---------~~i~i~ 495 (565)
T PRK10935 431 EANLGSALEEMLDQLRNQ----T--DAKITLDCRLPSQALDAQQQVHLLQIIREATLNAIKHANA---------SEIAVS 495 (565)
T ss_pred CCCHHHHHHHHHHHHHHh----h--CCeEEEEeeCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCC---------CeEEEE
Confidence 788999999888877642 1 233444332 22223444556999999999999999644 678888
Q ss_pred EEeC-CCeEEEEEeeeCCCCCCCCcccccccccccCCCCCCcccccccCCCCCCccccChHHHHHHHHHhCCeEEEEecC
Q 017673 269 VADG-LEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAADKGTMAGYGYGLPISRLYARYFGGDLQIISME 347 (368)
Q Consensus 269 ~~~~-~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~i~v~s~~ 347 (368)
+... ++.+.++|.|+|+|||++. ..|+|+||++|+.+++.|||+|++.|.+
T Consensus 496 ~~~~~~~~~~i~V~D~G~Gi~~~~----------------------------~~~~glGL~i~~~iv~~~~G~i~v~s~~ 547 (565)
T PRK10935 496 CVTNPDGEHTVSIRDDGIGIGELK----------------------------EPEGHYGLNIMQERAERLGGTLTISQPP 547 (565)
T ss_pred EEEcCCCEEEEEEEECCcCcCCCC----------------------------CCCCCcCHHHHHHHHHHcCCEEEEEECC
Confidence 8766 6789999999999999752 1378999999999999999999999999
Q ss_pred CCceEEEEEeCCCCC
Q 017673 348 GYGTDAYLHLSRLGD 362 (368)
Q Consensus 348 g~Gt~f~i~lP~~~~ 362 (368)
|+||+|++.||....
T Consensus 548 ~~Gt~~~i~lP~~~~ 562 (565)
T PRK10935 548 GGGTTVSLTFPSQQE 562 (565)
T ss_pred CCcEEEEEEECCCCC
Confidence 999999999998744
No 50
>PRK10547 chemotaxis protein CheA; Provisional
Probab=99.80 E-value=3e-18 Score=170.18 Aligned_cols=156 Identities=22% Similarity=0.288 Sum_probs=120.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHhhhCCCCceEEEcCCCceeeccchhHHHH---HHHHHHHHHHHHHH----hhcCCCCCCC
Q 017673 191 KMSPVQVARNASEHARCVCLREYGSAPDFNIYGDPSFTFPYVPSHLHLM---VFELVKNSLRAVEE----RYMDSDKVAP 263 (368)
Q Consensus 191 ~~~l~~li~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~d~~~l~~v---l~nLl~NAi~~~~~----~~~~~~~~~~ 263 (368)
.+.+..++...-..++..+... ++.+.+.+.+. .+..|+..+.++ |.||+.||++|+.+ +...++...+
T Consensus 342 ~~p~~~~~~~~~rlvrdla~~~-gk~v~l~~~g~---~~~lD~~~l~~l~dpL~hLirNAidHgie~p~~R~~~gkp~~G 417 (670)
T PRK10547 342 MMPMEYVFSRFPRLVRDLAGKL-GKQVELTLVGS---STELDKSLIERIIDPLTHLVRNSLDHGIELPEKRLAAGKNSVG 417 (670)
T ss_pred cccHHHHHHHHHHHHHHHHHHc-CCcEEEEEeCC---ceecCHHHHHHHHHHHHHHHHHHHHhhccchhhHHhcCCCCCC
Confidence 4556666666666666665554 34455555443 356788888887 67999999999843 1112223357
Q ss_pred CEEEEEEeCCCeEEEEEeeeCCCCCCCCc---------------------ccccccccccCCCCCCcccccccCCCCCCc
Q 017673 264 PIRIIVADGLEDVTIKVSDEGGGIPRSGL---------------------PKIFTYLYSTARNPLDENTDLAADKGTMAG 322 (368)
Q Consensus 264 ~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~---------------------~~if~~f~~~~~~~~~~~~~~~~~~~~~~g 322 (368)
.|.|++...++.+.|.|+|+|.||+++.+ ..||.|||++... .+..+|
T Consensus 418 ~I~l~a~~~~~~v~I~V~DdG~GId~e~i~~~a~~~Gl~~~~~ls~~e~~~lIF~pgfst~~~-----------~~~~sG 486 (670)
T PRK10547 418 NLILSAEHQGGNICIEVTDDGAGLNRERILAKAASQGLAVSENMSDEEVGMLIFAPGFSTAEQ-----------VTDVSG 486 (670)
T ss_pred ceEEEEEEcCCEEEEEEEeCCCCCCHHHHHHHHHHcCCCccccCCHHHHHHHhhcCCcccccc-----------cccCCC
Confidence 89999999999999999999999998643 3699999988754 233469
Q ss_pred cccChHHHHHHHHHhCCeEEEEecCCCceEEEEEeCCCC
Q 017673 323 YGYGLPISRLYARYFGGDLQIISMEGYGTDAYLHLSRLG 361 (368)
Q Consensus 323 ~GlGL~i~k~iv~~~gG~i~v~s~~g~Gt~f~i~lP~~~ 361 (368)
.|+||.+||.+++.|||+|++.|.+|+||+|++.||..-
T Consensus 487 rGvGL~iVk~~ve~lgG~I~v~S~~g~Gt~f~i~LPltl 525 (670)
T PRK10547 487 RGVGMDVVKRNIQEMGGHVEIQSKQGKGTTIRILLPLTL 525 (670)
T ss_pred CchhHHHHHHHHHHcCCEEEEEecCCCcEEEEEEEechh
Confidence 999999999999999999999999999999999999753
No 51
>COG0643 CheA Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms]
Probab=99.73 E-value=3.9e-17 Score=162.96 Aligned_cols=158 Identities=23% Similarity=0.270 Sum_probs=126.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHhhhCCCCceEEEcCCCceeeccchhHHHHHHHHHHHHHHHHHH----hhcCCCCCCCCEE
Q 017673 191 KMSPVQVARNASEHARCVCLREYGSAPDFNIYGDPSFTFPYVPSHLHLMVFELVKNSLRAVEE----RYMDSDKVAPPIR 266 (368)
Q Consensus 191 ~~~l~~li~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~d~~~l~~vl~nLl~NAi~~~~~----~~~~~~~~~~~I~ 266 (368)
.+.+..++...-..++.+... +++.+++.+.+.....-...-.+|.--|.+|+.||+.|..+ +...++.+.|+|.
T Consensus 389 MvP~~~vf~RfpR~VRdla~~-lgK~V~L~ieG~~telDksIlE~l~dPL~HLvRNAvDHGIE~pE~R~a~GKp~~G~I~ 467 (716)
T COG0643 389 MVPFEQVFSRFPRMVRDLARK-LGKQVELVIEGEDTELDKSILERLGDPLTHLVRNAVDHGIETPEERRAAGKPEEGTIT 467 (716)
T ss_pred ceeHHHHHhhccHHHHHHHHH-hCCeeEEEEecCCeeehHHHHHHhcccHHHHHhcchhccCCCHHHHHHcCCCCcceEE
Confidence 456777777777777766554 47788888887654322233334555699999999999843 4455566679999
Q ss_pred EEEEeCCCeEEEEEeeeCCCCCCC------------------------CcccccccccccCCCCCCcccccccCCCCCCc
Q 017673 267 IIVADGLEDVTIKVSDEGGGIPRS------------------------GLPKIFTYLYSTARNPLDENTDLAADKGTMAG 322 (368)
Q Consensus 267 i~~~~~~~~~~i~V~D~G~Gi~~~------------------------~~~~if~~f~~~~~~~~~~~~~~~~~~~~~~g 322 (368)
+++...++++.|.|+|+|.||+.+ ...-||.|.|+|... ....+|
T Consensus 468 L~A~~~gn~ivIev~DDG~Gid~ekI~~KAiErGli~~~~a~~lSd~Ei~~LIF~PGFSTa~~-----------VtdvSG 536 (716)
T COG0643 468 LSAYHEGNNIVIEVSDDGAGIDREKIREKAIERGLITEEEAETLSDEEILNLIFAPGFSTAEQ-----------VTDVSG 536 (716)
T ss_pred EEEEcCCCeEEEEEeeCCCCCCHHHHHHHHHHcCCCChHHhccCCHHHHHHHHhcCCCCcchh-----------hhcccC
Confidence 999999999999999999999972 234589999999876 455789
Q ss_pred cccChHHHHHHHHHhCCeEEEEecCCCceEEEEEeCCC
Q 017673 323 YGYGLPISRLYARYFGGDLQIISMEGYGTDAYLHLSRL 360 (368)
Q Consensus 323 ~GlGL~i~k~iv~~~gG~i~v~s~~g~Gt~f~i~lP~~ 360 (368)
.|.||-+||.-++.+||+|.++|.+|+||+|+|.||..
T Consensus 537 RGVGMDVVk~~I~~LgG~I~V~S~~G~GT~Fti~LPLT 574 (716)
T COG0643 537 RGVGMDVVKTNIEQLGGSISVSSEPGKGTTFTIRLPLT 574 (716)
T ss_pred CccCHHHHHHHHHHcCCEEEEEecCCCCeEEEEecCcH
Confidence 99999999999999999999999999999999999963
No 52
>PRK04184 DNA topoisomerase VI subunit B; Validated
Probab=99.64 E-value=1.1e-15 Score=147.05 Aligned_cols=117 Identities=31% Similarity=0.428 Sum_probs=92.1
Q ss_pred eccchhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEEEEe---CCCeEEEEEeeeCCCCCCCCcccccccccccCCCC
Q 017673 230 PYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVAD---GLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNP 306 (368)
Q Consensus 230 ~~d~~~l~~vl~nLl~NAi~~~~~~~~~~~~~~~~I~i~~~~---~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~ 306 (368)
..++..|.+++.||++||++|+.... . .+.|.|.+.. +++.+.|.|.|||+||+++.++++|.+|+.+....
T Consensus 31 ~~p~~~L~qVLkNLIeNAIDa~~~~g-i----lp~I~I~I~~~~~~~~~~~I~V~DNG~GIp~e~l~~iF~~f~~~SK~~ 105 (535)
T PRK04184 31 DNPARALYTTVKELVDNSLDACEEAG-I----LPDIKIEIKRVDEGKDHYRVTVEDNGPGIPPEEIPKVFGKLLYGSKFH 105 (535)
T ss_pred cCCHHHHHHHHHHHHHHHHHHhhhcC-C----CceEEEEEEEccCCCcEEEEEEEcCCCCCCHHHHHHHhhhhhcccccc
Confidence 34456799999999999999997620 0 1368888765 45679999999999999999999999986553320
Q ss_pred CCcccccccC-CCCCCccccChHHHHHHHHHhCCe-EEEEecCCCce-EEEEEeCCC
Q 017673 307 LDENTDLAAD-KGTMAGYGYGLPISRLYARYFGGD-LQIISMEGYGT-DAYLHLSRL 360 (368)
Q Consensus 307 ~~~~~~~~~~-~~~~~g~GlGL~i~k~iv~~~gG~-i~v~s~~g~Gt-~f~i~lP~~ 360 (368)
. ....++.|+||++|+.+++.|+|. +++.|.++.|+ .|++.||..
T Consensus 106 ---------~~~~s~G~~GLGLsiv~~isq~~~G~~I~V~S~~~~g~~~~~~~l~id 153 (535)
T PRK04184 106 ---------NLRQSRGQQGIGISAAVLYAQMTTGKPVRVISSTGGSKKAYYFELKID 153 (535)
T ss_pred ---------ccccCCCCCCcchHHHHHHHHHhcCCcEEEEEecCCCceEEEEEEEec
Confidence 1 123457999999999999999997 99999988887 788888743
No 53
>smart00387 HATPase_c Histidine kinase-like ATPases. Histidine kinase-, DNA gyrase B-, phytochrome-like ATPases.
Probab=99.61 E-value=4.6e-15 Score=114.60 Aligned_cols=109 Identities=28% Similarity=0.468 Sum_probs=95.4
Q ss_pred cchhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEEEEeCCCeEEEEEeeeCCCCCCCCcccccccccccCCCCCCccc
Q 017673 232 VPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENT 311 (368)
Q Consensus 232 d~~~l~~vl~nLl~NAi~~~~~~~~~~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~ 311 (368)
|+..|.+++.|++.||++|... ++.|.|.+...++.+.+.|.|+|.|++++..+.+|.++++.+..
T Consensus 2 ~~~~l~~~~~~l~~n~~~~~~~--------~~~v~i~~~~~~~~~~i~i~d~g~g~~~~~~~~~~~~~~~~~~~------ 67 (111)
T smart00387 2 DPDRLRQVLSNLLDNAIKYTPE--------GGRITVTLERDGDHLEITVEDNGPGIPPEDLEKIFEPFFRTDGR------ 67 (111)
T ss_pred CHHHHHHHHHHHHHHHHhcCCC--------CCeEEEEEEEcCCEEEEEEEeCCCCCCHHHHHHHhcCeEECCCC------
Confidence 5678999999999999999865 47899999988899999999999999999999999998876521
Q ss_pred ccccCCCCCCccccChHHHHHHHHHhCCeEEEEecCCCceEEEEEeCC
Q 017673 312 DLAADKGTMAGYGYGLPISRLYARYFGGDLQIISMEGYGTDAYLHLSR 359 (368)
Q Consensus 312 ~~~~~~~~~~g~GlGL~i~k~iv~~~gG~i~v~s~~g~Gt~f~i~lP~ 359 (368)
.....+.|+||++|+.+++.|+|.+++.+.++.|+.|++.+|.
T Consensus 68 -----~~~~~~~g~gl~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~ 110 (111)
T smart00387 68 -----SRKIGGTGLGLSIVKKLVELHGGEISVESEPGGGTTFTITLPL 110 (111)
T ss_pred -----CCCCCcccccHHHHHHHHHHcCCEEEEEecCCCcEEEEEEeeC
Confidence 1123578999999999999999999999987889999999985
No 54
>COG4585 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=99.60 E-value=5.1e-14 Score=133.24 Aligned_cols=91 Identities=26% Similarity=0.386 Sum_probs=83.0
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEEEEeCCCeEEEEEeeeCCCCCCCCcccccccccccCCCCCCcc
Q 017673 231 YVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDEN 310 (368)
Q Consensus 231 ~d~~~l~~vl~nLl~NAi~~~~~~~~~~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~ 310 (368)
.....+.+++++.+.||+||+.. ..|.|++...++.++++|.|||.|++++.
T Consensus 275 ~~e~~l~rivQEaltN~~rHa~A---------~~v~V~l~~~~~~l~l~V~DnG~Gf~~~~------------------- 326 (365)
T COG4585 275 EAEDALFRIVQEALTNAIRHAQA---------TEVRVTLERTDDELRLEVIDNGVGFDPDK------------------- 326 (365)
T ss_pred hHHHHHHHHHHHHHHHHHhccCC---------ceEEEEEEEcCCEEEEEEEECCcCCCccc-------------------
Confidence 44568999999999999999877 78999999999999999999999999884
Q ss_pred cccccCCCCCCccccChHHHHHHHHHhCCeEEEEecCCCceEEEEEeCC
Q 017673 311 TDLAADKGTMAGYGYGLPISRLYARYFGGDLQIISMEGYGTDAYLHLSR 359 (368)
Q Consensus 311 ~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~i~v~s~~g~Gt~f~i~lP~ 359 (368)
.+.|+||.-+|+.++..||++.+.|.+|.||++++.+|.
T Consensus 327 ----------~~~~~GL~~mreRv~~lgG~l~i~S~~g~Gt~i~i~lPl 365 (365)
T COG4585 327 ----------EGGGFGLLGMRERVEALGGTLTIDSAPGQGTTVTITLPL 365 (365)
T ss_pred ----------cCCCcchhhHHHHHHHcCCEEEEEecCCCceEEEEecCC
Confidence 126799999999999999999999999999999999994
No 55
>COG3850 NarQ Signal transduction histidine kinase, nitrate/nitrite-specific [Signal transduction mechanisms]
Probab=99.55 E-value=1.2e-12 Score=122.78 Aligned_cols=126 Identities=25% Similarity=0.342 Sum_probs=96.8
Q ss_pred CCHHHHHHHHHHHHHHHHHhhhCCCCceEEEcCCCc-eeecc-chhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEEE
Q 017673 192 MSPVQVARNASEHARCVCLREYGSAPDFNIYGDPSF-TFPYV-PSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIV 269 (368)
Q Consensus 192 ~~l~~li~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~d-~~~l~~vl~nLl~NAi~~~~~~~~~~~~~~~~I~i~~ 269 (368)
-++..-++.+++.+.. . .++.+++++..+. .+..+ .-++-||+.+-++||+||+.. ..|.|++
T Consensus 442 ~~L~~AL~~~~~~f~~----q--tg~~~~l~~qlp~~~lpa~qqvHlLqIvREAlsNa~KHa~A---------s~i~V~~ 506 (574)
T COG3850 442 AELPPALEQMLAEFSN----Q--TGITVTLDYQLPPRALPAHQQVHLLQIVREALSNAIKHAQA---------SEIKVTV 506 (574)
T ss_pred CchHHHHHHHHHHHHh----c--cCCeEEEeccCCCCCCCHHHHHHHHHHHHHHHHHHHHhccc---------CeEEEEE
Confidence 3555555666665543 2 3555665543322 12222 226889999999999999876 8999999
Q ss_pred EeCCCeEEEEEeeeCCCCCCCCcccccccccccCCCCCCcccccccCCCCCCccccChHHHHHHHHHhCCeEEEEecCCC
Q 017673 270 ADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAADKGTMAGYGYGLPISRLYARYFGGDLQIISMEGY 349 (368)
Q Consensus 270 ~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~i~v~s~~g~ 349 (368)
...++.+.+.|.|||+|||+...+ +| -+||.|++..++.+||.+.+++.+|+
T Consensus 507 ~~~~g~~~~~VeDnG~Gi~~~~e~---------------------------~g-HyGL~IM~ERA~~L~~~L~i~~~~~g 558 (574)
T COG3850 507 SQNDGQVTLTVEDNGVGIDEAAEP---------------------------SG-HYGLNIMRERAQRLGGQLRIRRREGG 558 (574)
T ss_pred EecCCeEEEEEeeCCcCCCCccCC---------------------------CC-CcchHHHHHHHHHhcCeEEEeecCCC
Confidence 988899999999999999987411 24 58999999999999999999999999
Q ss_pred ceEEEEEeCCC
Q 017673 350 GTDAYLHLSRL 360 (368)
Q Consensus 350 Gt~f~i~lP~~ 360 (368)
||.+.++||-.
T Consensus 559 GT~V~ltf~~~ 569 (574)
T COG3850 559 GTEVSLTFPPE 569 (574)
T ss_pred CeEEEEEeccc
Confidence 99999999954
No 56
>COG3920 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=99.51 E-value=5.7e-12 Score=109.80 Aligned_cols=194 Identities=23% Similarity=0.241 Sum_probs=133.4
Q ss_pred HHHHHHHHHhccCchHHHHHHH-HHHhcccCccccccChHHHHHHHHHHHHhhHHHHHhHHHHhhhcCCCCCCCcccccc
Q 017673 111 TQMIKAIKVRHNNVVPMMALGL-QQLKKEMDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIGQHVELHNPNPPPHCIGYID 189 (368)
Q Consensus 111 ~~~l~~~~~~~~~~l~~i~~~~-~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~li~~~l~l~~~~~~~~~~~~~~ 189 (368)
.-++..+.|+.+|.|..+++-+ ...+...+ +..+++... .+++..-.++.+.|.-+ . .
T Consensus 20 ~~ll~Ei~HRVKNnLqiIsSll~lq~r~~~~---------~~~~~~~~~-~~Ri~sla~~He~L~~s-~----------~ 78 (221)
T COG3920 20 ELLLREIHHRVKNNLQIISSLLRLQARKFED---------EVLEALRES-QNRIQSLALIHELLYKS-G----------D 78 (221)
T ss_pred HHHHHHhhhhhhhHHHHHHHHHHHHHhhcCC---------HHHHHHHHH-HHHHHHHHHHHHHHhcC-C----------c
Confidence 3488999999999999999555 33322222 133333332 22222222444444433 1 1
Q ss_pred cCCCHHHHHHHHHHHHHHHHHhhhCCCCceEEEcCCCceeecc-chhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEE
Q 017673 190 TKMSPVQVARNASEHARCVCLREYGSAPDFNIYGDPSFTFPYV-PSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRII 268 (368)
Q Consensus 190 ~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~d-~~~l~~vl~nLl~NAi~~~~~~~~~~~~~~~~I~i~ 268 (368)
..++...+++.+...+...+ ....+.+....++++.+..| ...|.-++.+|+.||+||.... .+.|.|.|+
T Consensus 79 ~~~~~~~~~~~L~~~l~~~~---~~~~~~~~~~~~~~~~l~~d~A~~Lgliv~EL~tNa~Khaf~~-----~~~G~I~I~ 150 (221)
T COG3920 79 DTWDFASYLELLASNLFPSY---GGKDIRLILDSGPNVFLDPDTAVPLGLIVHELVTNALKHAFLS-----RPGGEIRIT 150 (221)
T ss_pred ceEcHHHHHHHHHHHHHHhc---CCCCceEEEecCCceEECchhhHHHHHHHHHHHHHHHHhcCCC-----CCCCEEEEE
Confidence 36788888888888776654 12345555555555555444 2358899999999999998652 125899999
Q ss_pred EEeCCCe--EEEEEeeeCCCCCCCCcccccccccccCCCCCCcccccccCCCCCCccccChHHHHHHH-HHhCCeEEEEe
Q 017673 269 VADGLED--VTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAADKGTMAGYGYGLPISRLYA-RYFGGDLQIIS 345 (368)
Q Consensus 269 ~~~~~~~--~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~~~~~~~~~~~g~GlGL~i~k~iv-~~~gG~i~v~s 345 (368)
+...++. +.+.|.|+|.|+|.+.- + ...|+|+.+++.++ +..||.+...+
T Consensus 151 ~~~~~~~~~~~l~v~deg~G~~~~~~------~---------------------~~~g~G~~Lv~~lv~~q~~g~~~~~~ 203 (221)
T COG3920 151 LSREGDGGRFLLTVWDEGGGPPVEAP------L---------------------SRGGFGLQLVERLVPEQLGGELEDER 203 (221)
T ss_pred EEEcCCCCeEEEEEEECCCCCCCCCC------C---------------------CCCCcHHHHHHHHHHHHcCCeEEEEc
Confidence 9887764 89999999999998741 0 26789999999999 89999998887
Q ss_pred cCCCceEEEEEeCCCCC
Q 017673 346 MEGYGTDAYLHLSRLGD 362 (368)
Q Consensus 346 ~~g~Gt~f~i~lP~~~~ 362 (368)
.. ||.|+|.+|....
T Consensus 204 ~~--Gt~~~i~~~~~~~ 218 (221)
T COG3920 204 PD--GTEFRLRFPLSEA 218 (221)
T ss_pred CC--CEEEEEEEecccc
Confidence 54 8999999998753
No 57
>TIGR01925 spIIAB anti-sigma F factor. This model describes the SpoIIAB anti-sigma F factor. Sigma F regulates spore development in B subtilis. SpoIIAB binds to sigma F, preventing formation of the transcription complex at the promoter. SpoIIAA (anti-anti-sigma F factor) binds to SpoIIAB to inhibit association with sigma F, however SpoIIAB can phosphorylate SpoIIAA, causing disassociation of the SpoIIAA/B complex. The SpoIIE phosphatase dephosphorylates SpoIIAA.
Probab=99.51 E-value=1.1e-13 Score=112.24 Aligned_cols=100 Identities=24% Similarity=0.266 Sum_probs=81.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEEEEeCCCeEEEEEeeeCCCCCCCCcccccccccccCCCCCCcccc
Q 017673 233 PSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTD 312 (368)
Q Consensus 233 ~~~l~~vl~nLl~NAi~~~~~~~~~~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~~ 312 (368)
...+..++.|++.||++|+... ..++.|.|.+...++.+.+.|.|+|+|||+ .+++|++|++.+..
T Consensus 37 ~~~l~~~l~eli~Nai~h~~~~-----~~~~~I~v~~~~~~~~~~i~I~D~G~gi~~--~~~~~~~~~~~~~~------- 102 (137)
T TIGR01925 37 LTDIKTAVSEAVTNAIIHGYEE-----NCEGVVYISATIEDHEVYITVRDEGIGIEN--LEEAREPLYTSKPE------- 102 (137)
T ss_pred HHHHHHHHHHHHHHHHHhccCC-----CCCcEEEEEEEEeCCEEEEEEEEcCCCcCc--hhHhhCCCcccCCC-------
Confidence 4468899999999999985320 114689999988889999999999999983 67899999976543
Q ss_pred cccCCCCCCccccChHHHHHHHHHhCCeEEEEecCCCceEEEEEe
Q 017673 313 LAADKGTMAGYGYGLPISRLYARYFGGDLQIISMEGYGTDAYLHL 357 (368)
Q Consensus 313 ~~~~~~~~~g~GlGL~i~k~iv~~~gG~i~v~s~~g~Gt~f~i~l 357 (368)
..+.|+||+++++ +.+++++++.++.||+|+++.
T Consensus 103 -------~~~~GlGL~lv~~----~~~~l~~~~~~~~Gt~v~i~~ 136 (137)
T TIGR01925 103 -------LERSGMGFTVMEN----FMDDVSVDSEKEKGTKIIMKK 136 (137)
T ss_pred -------CCCCcccHHHHHH----hCCcEEEEECCCCCeEEEEEe
Confidence 3589999998876 567999999999999998863
No 58
>PRK14868 DNA topoisomerase VI subunit B; Provisional
Probab=99.50 E-value=9.2e-14 Score=136.59 Aligned_cols=122 Identities=22% Similarity=0.186 Sum_probs=83.1
Q ss_pred CCceEEEcCCCc---eeeccchhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEEEEeCCCeEEEEEeeeCCCCCCCCc
Q 017673 216 APDFNIYGDPSF---TFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGL 292 (368)
Q Consensus 216 ~~~i~~~~~~~~---~~~~d~~~l~~vl~nLl~NAi~~~~~~~~~~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~ 292 (368)
.+.+...+..+. .+..|...|.+++.|||+||++|+.... . .+.|.|.+...++.+.|.|.|||+||+++.+
T Consensus 24 ~iS~aEfF~kN~~~lgfD~d~r~L~tVLkNLIeNALDAs~~~g-i----lp~I~V~Ie~~g~~v~I~VeDNG~GIp~EdL 98 (795)
T PRK14868 24 EISIAEFFEKNKHMLGFDSGARGLVTAVKEAVDNALDATEEAG-I----LPDIYVEIEEVGDYYRLVVEDNGPGITKEQI 98 (795)
T ss_pred ccceeeecccCcceeeccCCHHHHHHHHHHHHHHHHHhCcccC-C----CceEEEEEEECCCEEEEEEEEcCCCCCHHHH
Confidence 444444443333 2444566899999999999999986510 0 1268899888888899999999999999999
Q ss_pred ccccccccccCCCCCCcccccccCCCCCCccccChHHHHHHHHHhCCeEEEEecCCC
Q 017673 293 PKIFTYLYSTARNPLDENTDLAADKGTMAGYGYGLPISRLYARYFGGDLQIISMEGY 349 (368)
Q Consensus 293 ~~if~~f~~~~~~~~~~~~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~i~v~s~~g~ 349 (368)
+++|++|+++...... ....+..|.|||+.++...+ .+||.+.+.|..+.
T Consensus 99 p~IFerf~~tSKf~~~------~~srG~rG~GLglai~~sql-t~GgpI~I~S~~~~ 148 (795)
T PRK14868 99 PKVFGKLLYGSRFHAR------EQSRGQQGIGISAAVLYSQL-TSGKPAKITSRTQG 148 (795)
T ss_pred HHHhhhhccccccccc------ccCCCCCceehHHHHHHHHH-cCCCcEEEEeCCCC
Confidence 9999999855321000 00122345555555555544 46888999998643
No 59
>cd00075 HATPase_c Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins
Probab=99.50 E-value=1.2e-13 Score=104.93 Aligned_cols=103 Identities=29% Similarity=0.485 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEEEEeCCCeEEEEEeeeCCCCCCCCcccccccccccCCCCCCccccccc
Q 017673 236 LHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAA 315 (368)
Q Consensus 236 l~~vl~nLl~NAi~~~~~~~~~~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~~~~~ 315 (368)
|.+++.+++.||++|+... ++.|.|.+...++.+.|.|.|+|.|+++...+..|.++.....
T Consensus 1 l~~~~~~ll~Na~~~~~~~-------~~~v~i~~~~~~~~~~v~i~d~g~g~~~~~~~~~~~~~~~~~~----------- 62 (103)
T cd00075 1 LQQVLLNLLSNAIKHTPEG-------GGRITISVERDGDHLEIRVEDNGPGIPEEDLERIFERFSDGSR----------- 62 (103)
T ss_pred CHHHHHHHHHHHHHhCcCC-------CCeEEEEEEecCCEEEEEEEeCCCCCCHHHHHHHhhhhhcCCC-----------
Confidence 4678999999999997641 3679999988888999999999999999999998887611111
Q ss_pred CCCCCCccccChHHHHHHHHHhCCeEEEEecCCCceEEEEEe
Q 017673 316 DKGTMAGYGYGLPISRLYARYFGGDLQIISMEGYGTDAYLHL 357 (368)
Q Consensus 316 ~~~~~~g~GlGL~i~k~iv~~~gG~i~v~s~~g~Gt~f~i~l 357 (368)
.....+.|+||++++.+++.|||.+++.+..+.|+.|++.+
T Consensus 63 -~~~~~~~g~gl~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~ 103 (103)
T cd00075 63 -SRKGGGTGLGLSIVKKLVELHGGRIEVESEPGGGTTFTITL 103 (103)
T ss_pred -CCCCCccccCHHHHHHHHHHcCCEEEEEeCCCCcEEEEEEC
Confidence 12235899999999999999999999999887799998764
No 60
>TIGR01052 top6b DNA topoisomerase VI, B subunit. This model describes DNA topoisomerase VI, an archaeal type II DNA topoisomerase (DNA gyrase).
Probab=99.48 E-value=2.1e-13 Score=130.06 Aligned_cols=111 Identities=27% Similarity=0.399 Sum_probs=87.3
Q ss_pred eeccchhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEEEEeCC-CeEEEEEeeeCCCCCCCCcccccccccccCCCCC
Q 017673 229 FPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGL-EDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPL 307 (368)
Q Consensus 229 ~~~d~~~l~~vl~nLl~NAi~~~~~~~~~~~~~~~~I~i~~~~~~-~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~ 307 (368)
+.++...|.+++.||++||++|+.... ..+.|.|.+...+ +.+.|+|.|||+||+++.++++|++|+.+.....
T Consensus 22 f~~~~~~L~~VlkELVeNAIDA~~~~g-----~~p~I~V~i~~~g~~~~~I~V~DNG~GIp~edl~~iF~rf~~tsK~~~ 96 (488)
T TIGR01052 22 YSGKIRSLTTVIHELVTNSLDACEEAG-----ILPDIKVEIEKIGKDHYKVTVEDNGPGIPEEYIPKVFGKMLAGSKFHR 96 (488)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhhccC-----CCceEEEEEEECCCceEEEEEEECCCCCCHHHHHhhhhhccccCcccc
Confidence 556677899999999999999987510 0137888887643 5689999999999999999999999877654300
Q ss_pred CcccccccCCCCCCccccChHHHHHHHHHhCCe-EEEEecCCCceEE
Q 017673 308 DENTDLAADKGTMAGYGYGLPISRLYARYFGGD-LQIISMEGYGTDA 353 (368)
Q Consensus 308 ~~~~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~-i~v~s~~g~Gt~f 353 (368)
.....++.|+||++++.+++.|+|+ +++.|..+ |..|
T Consensus 97 --------~~~s~G~~GlGLs~~~~isq~~~G~~i~V~S~~~-g~~~ 134 (488)
T TIGR01052 97 --------IIQSRGQQGIGISGAVLYSQMTTGKPVKVISSTG-GEIY 134 (488)
T ss_pred --------ccccCCCccEehhHHHHHHHHcCCceEEEEEecC-CceE
Confidence 0123468999999999999999998 99999875 5544
No 61
>PRK03660 anti-sigma F factor; Provisional
Probab=99.44 E-value=1.2e-12 Score=107.22 Aligned_cols=106 Identities=24% Similarity=0.274 Sum_probs=85.0
Q ss_pred cchhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEEEEeCCCeEEEEEeeeCCCCCCCCcccccccccccCCCCCCccc
Q 017673 232 VPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENT 311 (368)
Q Consensus 232 d~~~l~~vl~nLl~NAi~~~~~~~~~~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~ 311 (368)
+...+.+++.|++.||++|..... .++.|.|.+...++.+.+.|.|+|+||++ ....|++|+++...
T Consensus 36 ~~~~l~~~l~eli~Nai~h~~~~~-----~~~~i~i~~~~~~~~l~i~I~D~G~g~~~--~~~~~~~~~~~~~~------ 102 (146)
T PRK03660 36 ELTEIKTAVSEAVTNAIIHGYENN-----PDGVVYIEVEIEEEELEITVRDEGKGIED--IEEAMQPLYTTKPE------ 102 (146)
T ss_pred HHHhHHHHHHHHHHHHHHHhcCCC-----CCCEEEEEEEECCCEEEEEEEEccCCCCh--HHHhhCCCcccCCC------
Confidence 345789999999999999864311 13679999988888999999999999986 56789999876643
Q ss_pred ccccCCCCCCccccChHHHHHHHHHhCCeEEEEecCCCceEEEEEeCCCCC
Q 017673 312 DLAADKGTMAGYGYGLPISRLYARYFGGDLQIISMEGYGTDAYLHLSRLGD 362 (368)
Q Consensus 312 ~~~~~~~~~~g~GlGL~i~k~iv~~~gG~i~v~s~~g~Gt~f~i~lP~~~~ 362 (368)
..+.|+||++++. +.+.+++++.++.||+|+++.+....
T Consensus 103 --------~~~~GlGL~i~~~----~~~~i~~~~~~~~Gt~~~i~~~~~~~ 141 (146)
T PRK03660 103 --------LERSGMGFTVMES----FMDEVEVESEPGKGTTVRMKKYLKKS 141 (146)
T ss_pred --------CCCccccHHHHHH----hCCeEEEEecCCCcEEEEEEEEeccc
Confidence 2478999998775 56789999988899999999886543
No 62
>COG3851 UhpB Signal transduction histidine kinase, glucose-6-phosphate specific [Signal transduction mechanisms]
Probab=99.43 E-value=2.4e-11 Score=108.61 Aligned_cols=189 Identities=15% Similarity=0.175 Sum_probs=129.2
Q ss_pred HHHHHHHHHhccCchHHHHHHHHHHhcccCccccccChHHHHHHHHHHHHhhHHHHHhHHHHhhhcCCCCCCCccccccc
Q 017673 111 TQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIGQHVELHNPNPPPHCIGYIDT 190 (368)
Q Consensus 111 ~~~l~~~~~~~~~~l~~i~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~li~~~l~l~~~~~~~~~~~~~~~ 190 (368)
.+..+++++|+-..++.|.-...-++.--+ ....++....+..-+.++..-+.+++.--|+ ..+ .
T Consensus 304 k~vARELHDeIGQnITAIr~Qa~ivkR~~~-------~~q~kqaas~Ie~LslrI~~svrqLL~rLRP----~~L----D 368 (497)
T COG3851 304 KDVARELHDEIGQNITAIRTQAGIVKRAAD-------NAQVKQAASLIEQLSLRIYDSVRQLLGRLRP----RQL----D 368 (497)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHhccC-------CHhHHhHHHHHHHHHHHHHHHHHHHHHhcCC----ccc----c
Confidence 447788888899999988755543433222 1222222222222222233334444444444 222 3
Q ss_pred CCCHHHHHHHHHHHHHHHHHhhhCCCCceEEEcCCC--ceeeccchhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEE
Q 017673 191 KMSPVQVARNASEHARCVCLREYGSAPDFNIYGDPS--FTFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRII 268 (368)
Q Consensus 191 ~~~l~~li~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~d~~~l~~vl~nLl~NAi~~~~~~~~~~~~~~~~I~i~ 268 (368)
+..+.+.++.+++.+.. .++ ++...++...+ ..-..-+-.|+++..+++.|-+||... +.|+|.
T Consensus 369 dL~l~qai~~l~~Em~~--~er---gihcq~~~~~n~~~ldet~rvTLyRl~QE~LNNI~KHA~A---------S~V~i~ 434 (497)
T COG3851 369 DLTLEQAIRSLLREMEL--EER---GIHCQLDWRINETALDETQRVTLYRLCQELLNNICKHADA---------SAVTIQ 434 (497)
T ss_pred cccHHHHHHHHHHHhhh--hhc---CeEEEeccccCcccCCcceeEeHHHHHHHHHHHHHhcccc---------ceEEEE
Confidence 67788888888887754 222 44444442211 112223446999999999999999877 899999
Q ss_pred EEeCCCeEEEEEeeeCCCCCCCCcccccccccccCCCCCCcccccccCCCCCCccccChHHHHHHHHHhCCeEEEEecCC
Q 017673 269 VADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAADKGTMAGYGYGLPISRLYARYFGGDLQIISMEG 348 (368)
Q Consensus 269 ~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~i~v~s~~g 348 (368)
+...++.+.+.|+|||.|+|+.. +-.|+||.-+++.|...||++.++|.
T Consensus 435 l~~~~e~l~Lei~DdG~Gl~~~~-----------------------------~v~G~Gl~GmrERVsaLGG~ltlssq-- 483 (497)
T COG3851 435 LWQQDERLMLEIEDDGSGLPPGS-----------------------------GVQGFGLTGMRERVSALGGTLTLSSQ-- 483 (497)
T ss_pred EeeCCcEEEEEEecCCcCCCCCC-----------------------------CccCcCcchHHHHHHHhCCceEEEec--
Confidence 99999999999999999999874 35789999999999999999999994
Q ss_pred CceEEEEEeCC
Q 017673 349 YGTDAYLHLSR 359 (368)
Q Consensus 349 ~Gt~f~i~lP~ 359 (368)
.||.+.|.+|.
T Consensus 484 ~GTrviVnLPq 494 (497)
T COG3851 484 HGTRVIVNLPQ 494 (497)
T ss_pred cCcEEEEecch
Confidence 58999999994
No 63
>PRK14867 DNA topoisomerase VI subunit B; Provisional
Probab=99.41 E-value=1.1e-12 Score=128.86 Aligned_cols=114 Identities=25% Similarity=0.354 Sum_probs=89.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEEEEeC-CCeEEEEEeeeCCCCCCCCcccccccccccCCCCCCcccc
Q 017673 234 SHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADG-LEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTD 312 (368)
Q Consensus 234 ~~l~~vl~nLl~NAi~~~~~~~~~~~~~~~~I~i~~~~~-~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~~ 312 (368)
..|.+++.||++||++|+.... ..+.|.|.+... .+.+.|.|.|||+|||++.++++|++|+++..-..
T Consensus 35 r~L~~VVkELVeNAIDA~~~~g-----~~p~I~V~I~~~g~~~~~I~V~DNG~GIp~e~l~~iFerF~atSK~~~----- 104 (659)
T PRK14867 35 RSMTTIIHELVTNSLDACEEAE-----ILPDIKVEIEKLGSDHYKVAVEDNGPGIPPEFVPKVFGKMLAGSKMHR----- 104 (659)
T ss_pred HHHHHHHHHHHHHHHHHhhccC-----CCceEEEEEEECCCcEEEEEEEeeCeeCCHHHHhhhhccccccCcccc-----
Confidence 3466999999999999987521 024788888764 45789999999999999999999999887653200
Q ss_pred cccCCCCCCccccChHHHHHHHHHh-CCeEEEEecCCCceEEEEEeCCC
Q 017673 313 LAADKGTMAGYGYGLPISRLYARYF-GGDLQIISMEGYGTDAYLHLSRL 360 (368)
Q Consensus 313 ~~~~~~~~~g~GlGL~i~k~iv~~~-gG~i~v~s~~g~Gt~f~i~lP~~ 360 (368)
...+.++.|+||+++..+.+.+ ||.+.+.|.++.|++|++.+|..
T Consensus 105 ---~~qS~G~rG~GLa~a~~vsql~~G~pI~I~S~~g~G~~f~i~L~i~ 150 (659)
T PRK14867 105 ---LIQSRGQQGIGAAGVLLFSQITTGKPLKITTSTGDGKIHEMEIKMS 150 (659)
T ss_pred ---eeccCCCCcccHHHHHHHHHHhcCCcEEEEEEcCCCEEEEEEEEEE
Confidence 0123457899999999999775 56699999999999999998864
No 64
>COG3275 LytS Putative regulator of cell autolysis [Signal transduction mechanisms]
Probab=99.28 E-value=2.7e-10 Score=105.59 Aligned_cols=159 Identities=21% Similarity=0.202 Sum_probs=116.0
Q ss_pred HHHhHHHHhhhcCCCCCCCcccccccCCCHHHHHHHHHHHHHHHHHhhhCCCCceEEEcCCCceeeccchhHHHHHHHHH
Q 017673 165 IRMLIGQHVELHNPNPPPHCIGYIDTKMSPVQVARNASEHARCVCLREYGSAPDFNIYGDPSFTFPYVPSHLHLMVFELV 244 (368)
Q Consensus 165 ~~~li~~~l~l~~~~~~~~~~~~~~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~d~~~l~~vl~nLl 244 (368)
.|.|+-++..+.|.+-+... .+.+.+.+-+..+-..+.- -+.+++...++.++.|+...-...|.. +++-|+
T Consensus 394 AreLil~LS~yfR~NL~~~~----~~~v~L~kEl~~v~AYl~I-EkARF~~rL~v~i~id~~l~~~~iP~f---ilQPLV 465 (557)
T COG3275 394 ARELILYLSTYFRYNLENNT----QEIVTLSKELEHVNAYLSI-EKARFGDRLDVVIDIDEELRQVQIPSF---ILQPLV 465 (557)
T ss_pred HHHHHHHHHHHHHHHhcCCc----ceEeehHHHHHHHHHHHHH-HHHhcCCceEEEEecCHHHhhccCchh---hhhHHH
Confidence 34455555555444211111 2467888888777666553 344556677888887776654444544 456689
Q ss_pred HHHHHHHHHhhcCCCCCCCCEEEEEEeCCCeEEEEEeeeCCCCCCCCcccccccccccCCCCCCcccccccCCCCCCccc
Q 017673 245 KNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAADKGTMAGYG 324 (368)
Q Consensus 245 ~NAi~~~~~~~~~~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~~~~~~~~~~~g~G 324 (368)
.||+||...... +.+.|.|++..++..+++.|+|||.|++|+. ..|+|
T Consensus 466 ENAIKHG~~~~~----~~g~V~I~V~~~d~~l~i~VeDng~li~p~~----------------------------~~g~g 513 (557)
T COG3275 466 ENAIKHGISQLK----DTGRVTISVEKEDADLRIEVEDNGGLIQPDE----------------------------EDGTG 513 (557)
T ss_pred HHHHHhcccchh----cCCceEEEEEEeCCeEEEEEecCCCCcCCCC----------------------------CCCCC
Confidence 999999854221 2589999999999999999999999999972 24999
Q ss_pred cChHHHHHHHHHhCC---eEEEEecCCCceEEEEEeCCCCCC
Q 017673 325 YGLPISRLYARYFGG---DLQIISMEGYGTDAYLHLSRLGDS 363 (368)
Q Consensus 325 lGL~i~k~iv~~~gG---~i~v~s~~g~Gt~f~i~lP~~~~~ 363 (368)
+||+.+++.++.+-| -+.+.+.+..||++.+++|..+..
T Consensus 514 iGL~nv~~RLk~lyG~~~gl~i~~~~q~gTri~f~lp~~~~~ 555 (557)
T COG3275 514 IGLANVHKRLKLLYGDDEGLHIESLEQAGTRIIFRLPLQRTA 555 (557)
T ss_pred hHHHHHHHHHHHhcCccccceEEeccCCCcEEEEEecCcccc
Confidence 999999999977777 688999988899999999987654
No 65
>PRK04069 serine-protein kinase RsbW; Provisional
Probab=99.27 E-value=4.4e-11 Score=99.51 Aligned_cols=104 Identities=13% Similarity=0.082 Sum_probs=81.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEEEEeCCCeEEEEEeeeCCCCCCCCcccccccccccCCCCCCcccc
Q 017673 233 PSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTD 312 (368)
Q Consensus 233 ~~~l~~vl~nLl~NAi~~~~~~~~~~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~~ 312 (368)
...+..++.+++.||++|.... ..++.|.|++...++.+.|.|+|+|+||+++.++..|.+|+.....
T Consensus 40 ~~~l~lav~Ea~~Nai~Hg~~~-----~~~~~I~I~~~~~~~~l~i~V~D~G~g~d~~~~~~~~~p~~~~~~~------- 107 (161)
T PRK04069 40 IEDMKIAVSEACTNAVQHAYKE-----DEVGEIHIRFEIYEDRLEIVVADNGVSFDYETLKSKLGPYDISKPI------- 107 (161)
T ss_pred HHHHHHHHHHHHHHHHHhccCC-----CCCCeEEEEEEEECCEEEEEEEECCcCCChHHhccccCCCCCCCcc-------
Confidence 3468889999999999998541 1146899999888999999999999999998888889988765543
Q ss_pred cccCCCCCCccccChHHHHHHHHHhCCeEEEEecCCCceEEEEEeCC
Q 017673 313 LAADKGTMAGYGYGLPISRLYARYFGGDLQIISMEGYGTDAYLHLSR 359 (368)
Q Consensus 313 ~~~~~~~~~g~GlGL~i~k~iv~~~gG~i~v~s~~g~Gt~f~i~lP~ 359 (368)
....+.|+||++++.+++. +.+.+ ..|++|++.-..
T Consensus 108 -----~~~~~~G~GL~li~~l~d~----v~~~~--~~G~~v~~~k~~ 143 (161)
T PRK04069 108 -----EDLREGGLGLFLIETLMDD----VTVYK--DSGVTVSMTKYI 143 (161)
T ss_pred -----cccCCCceeHHHHHHHHHh----EEEEc--CCCcEEEEEEEc
Confidence 1124679999999999986 66665 347888776543
No 66
>PF14501 HATPase_c_5: GHKL domain
Probab=99.22 E-value=4.3e-10 Score=85.80 Aligned_cols=99 Identities=18% Similarity=0.181 Sum_probs=76.5
Q ss_pred cchhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEEEEeCCCeEEEEEeeeCCCCCCCCcccccccccccCCCCCCccc
Q 017673 232 VPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENT 311 (368)
Q Consensus 232 d~~~l~~vl~nLl~NAi~~~~~~~~~~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~ 311 (368)
++..|..+|.||++||++|+..... .+.|.|.+...++.+.|.|.+.-.+ + .+.++ +...
T Consensus 2 ~~~dl~~il~nlldNAiea~~~~~~-----~~~I~i~~~~~~~~~~i~i~N~~~~---~-~~~~~----~~~~------- 61 (100)
T PF14501_consen 2 DDLDLCRILGNLLDNAIEACKKYED-----KRFISISIREENGFLVIIIENSCEK---E-IEKLE----SSSS------- 61 (100)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCC-----CcEEEEEEEecCCEEEEEEEECCCC---c-ccccc----cccc-------
Confidence 3456889999999999999876211 3689999999999999999998554 2 12322 1111
Q ss_pred ccccCCCCCCccccChHHHHHHHHHhCCeEEEEecCCCceEEEEEeC
Q 017673 312 DLAADKGTMAGYGYGLPISRLYARYFGGDLQIISMEGYGTDAYLHLS 358 (368)
Q Consensus 312 ~~~~~~~~~~g~GlGL~i~k~iv~~~gG~i~v~s~~g~Gt~f~i~lP 358 (368)
...+.|+||..++.+++.++|.+.++...+ -.++.|.||
T Consensus 62 -------~~~~~G~GL~~v~~i~~~y~g~~~~~~~~~-~f~~~i~ip 100 (100)
T PF14501_consen 62 -------KKKGHGIGLKNVKKILEKYNGSLSIESEDG-IFTVKIVIP 100 (100)
T ss_pred -------CCCCCCcCHHHHHHHHHHCCCEEEEEEECC-EEEEEEEEC
Confidence 135999999999999999999999988765 477778877
No 67
>TIGR01924 rsbW_low_gc serine-protein kinase RsbW. This model describes the anti-sigma B factor also known as serine-protein kinase RsbW. Sigma B controls the general stress regulon in B subtilis and is activated by cell stresses such as stationary phase and heat shock. RsbW binds to sigma B and prevents formation of the transcription complex at the promoter. RsbV (anti-anti-sigma factor) binds to RsbW to inhibit association with sigma B, however RsbW can phosphorylate RsbV, causing disassociation of the RsbV/RsbW complex. Low ATP level or environmental stress causes the dephosphorylation of RsbV.
Probab=99.17 E-value=2.5e-10 Score=94.60 Aligned_cols=103 Identities=15% Similarity=0.137 Sum_probs=79.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEEEEeCCCeEEEEEeeeCCCCCCCCcccccccccccCCCCCCccccc
Q 017673 234 SHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDL 313 (368)
Q Consensus 234 ~~l~~vl~nLl~NAi~~~~~~~~~~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~~~ 313 (368)
..+..++.+++.||++|+... ..++.|.|.+...++.+.+.|+|+|+|++++.++..|.+++.....
T Consensus 41 ~~l~lav~Ea~~Nai~ha~~~-----~~~~~I~I~~~~~~~~l~i~V~D~G~gfd~~~~~~~~~~~~~~~~~-------- 107 (159)
T TIGR01924 41 EDLKIAVSEACTNAVKHAYKE-----GENGEIGISFHIYEDRLEIIVSDQGDSFDMDTFKQSLGPYDGSEPI-------- 107 (159)
T ss_pred HHHHHHHHHHHHHHHHhccCC-----CCCCeEEEEEEEeCCEEEEEEEEcccccCchhhccccCCCCCCCCc--------
Confidence 358889999999999998531 1146899999989999999999999999999888888776654432
Q ss_pred ccCCCCCCccccChHHHHHHHHHhCCeEEEEecCCCceEEEEEeCC
Q 017673 314 AADKGTMAGYGYGLPISRLYARYFGGDLQIISMEGYGTDAYLHLSR 359 (368)
Q Consensus 314 ~~~~~~~~g~GlGL~i~k~iv~~~gG~i~v~s~~g~Gt~f~i~lP~ 359 (368)
....+.|+||++++.+++ .+.+.+ +.|+++++....
T Consensus 108 ----~~~~~~G~GL~Li~~L~D----~v~~~~--~~G~~l~l~k~~ 143 (159)
T TIGR01924 108 ----DDLREGGLGLFLIETLMD----EVEVYE--DSGVTVAMTKYL 143 (159)
T ss_pred ----ccCCCCccCHHHHHHhcc----EEEEEe--CCCEEEEEEEEE
Confidence 113467999999999998 567766 346777776543
No 68
>COG2972 Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]
Probab=99.16 E-value=2.7e-09 Score=103.82 Aligned_cols=127 Identities=23% Similarity=0.245 Sum_probs=95.2
Q ss_pred HHHHhhhCCCCceEEEcCCCceeeccchhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEEEEeCCCeEEEEEeeeCCC
Q 017673 207 CVCLREYGSAPDFNIYGDPSFTFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGG 286 (368)
Q Consensus 207 ~~~~~~~~~~~~i~~~~~~~~~~~~d~~~l~~vl~nLl~NAi~~~~~~~~~~~~~~~~I~i~~~~~~~~~~i~V~D~G~G 286 (368)
.....+++..+++.+..++...-..||. .+++.|++||++|+.+.. .+++.|.|.+...++.+.++|+|||+|
T Consensus 325 ~iq~~r~~~~le~~~~i~~~~~~l~~p~---l~lqpLvENAi~hgi~~~----~~~~~I~i~~~~~~~~i~i~i~Dng~g 397 (456)
T COG2972 325 EIQKLRIGDRLEVPLPIDEELEPLIDPK---LVLQPLVENAIEHGIEPK----RPGGSIAISAKKQDDVIQISISDNGPG 397 (456)
T ss_pred HHHHhccCcceEEEeccCcccccccCch---HHHhHHHHHHHHHhcccC----CCCCEEEEEEEEcCCEEEEEEeeCCCC
Confidence 3334444455666666555544345554 578899999999995522 225789999999999999999999999
Q ss_pred CCCCCcccccccccccCCCCCCcccccccCCCCCCc-cccChHHHHHHHHHhCCe--EEEEecCCCceEEEEEeCCCC
Q 017673 287 IPRSGLPKIFTYLYSTARNPLDENTDLAADKGTMAG-YGYGLPISRLYARYFGGD--LQIISMEGYGTDAYLHLSRLG 361 (368)
Q Consensus 287 i~~~~~~~if~~f~~~~~~~~~~~~~~~~~~~~~~g-~GlGL~i~k~iv~~~gG~--i~v~s~~g~Gt~f~i~lP~~~ 361 (368)
|+++....+ +++.. + .|+||.-++.+++.|-|. +.++|.+++||.+.+.+|...
T Consensus 398 ~~~~~~~~~-----~~~~~----------------~r~giGL~Nv~~rl~~~~g~~~~~i~s~~~~gt~v~~~~~~~~ 454 (456)
T COG2972 398 IDEEKLEGL-----STKGE----------------NRSGIGLSNVKERLKLYFGEPGLSIDSQPGKGTFVQIIIPKRE 454 (456)
T ss_pred CChhHHHHH-----Hhhcc----------------CcccccHHHHHHHHHHeeCCcceeEeecCCCcEEEEEEeehhh
Confidence 999865443 22222 3 599999999999888887 689999999999999999753
No 69
>COG4564 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=99.13 E-value=2.7e-09 Score=94.53 Aligned_cols=111 Identities=23% Similarity=0.229 Sum_probs=88.6
Q ss_pred CCceEEEcCCCce--eeccchhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEEEEeCCCeEEEEEeeeCCCCCCCCcc
Q 017673 216 APDFNIYGDPSFT--FPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLP 293 (368)
Q Consensus 216 ~~~i~~~~~~~~~--~~~d~~~l~~vl~nLl~NAi~~~~~~~~~~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~ 293 (368)
++.+++..+.... .......|++|.++-+.|-=+|+.. .+|.|.+...++.+.+.|+|||+|++-+...
T Consensus 338 g~~itle~~~~p~~l~~e~~talyRv~QEaltNIErHa~A---------trv~ill~~~~d~vql~vrDnG~GF~~~~~~ 408 (459)
T COG4564 338 GIEITLEFDTQPGKLKPEVATALYRVVQEALTNIERHAGA---------TRVTILLQQMGDMVQLMVRDNGVGFSVKEAL 408 (459)
T ss_pred CeEEEEEecCCcccCCcHHHHHHHHHHHHHHHHHHhhcCC---------eEEEEEeccCCcceEEEEecCCCCccchhhc
Confidence 5566665443322 2333457999999999998888744 7899999999999999999999999976422
Q ss_pred cccccccccCCCCCCcccccccCCCCCCccccChHHHHHHHHHhCCeEEEEecCCCceEEEEEeCCCCC
Q 017673 294 KIFTYLYSTARNPLDENTDLAADKGTMAGYGYGLPISRLYARYFGGDLQIISMEGYGTDAYLHLSRLGD 362 (368)
Q Consensus 294 ~if~~f~~~~~~~~~~~~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~i~v~s~~g~Gt~f~i~lP~~~~ 362 (368)
. .-.|+||--+++.+..+||.+.++|.+. ||.+++.||....
T Consensus 409 ~--------------------------~~~GiGLRNMrERma~~GG~~~v~s~p~-GTel~v~Lp~~~~ 450 (459)
T COG4564 409 Q--------------------------KRHGIGLRNMRERMAHFGGELEVESSPQ-GTELTVLLPLDAS 450 (459)
T ss_pred c--------------------------CccccccccHHHHHHHhCceEEEEecCC-CcEEEEEecchhh
Confidence 1 2369999999999999999999999987 9999999998643
No 70
>COG1389 DNA topoisomerase VI, subunit B [DNA replication, recombination, and repair]
Probab=98.86 E-value=1.7e-08 Score=93.25 Aligned_cols=120 Identities=29% Similarity=0.399 Sum_probs=90.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEEEEeC-CCeEEEEEeeeCCCCCCCCcccccccccc-cCCCCCCcc
Q 017673 233 PSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADG-LEDVTIKVSDEGGGIPRSGLPKIFTYLYS-TARNPLDEN 310 (368)
Q Consensus 233 ~~~l~~vl~nLl~NAi~~~~~~~~~~~~~~~~I~i~~~~~-~~~~~i~V~D~G~Gi~~~~~~~if~~f~~-~~~~~~~~~ 310 (368)
...|.+++.+|++||++++... |- -+.|.|.+... .+++.+.|.|||+|||++.++++|-+++- ++-. .
T Consensus 34 ~RsL~~tv~ElV~NSLDA~eea-GI----LPdI~v~I~~~~~d~y~v~veDNGpGIP~e~IPkvFGk~LygSKfh-~--- 104 (538)
T COG1389 34 IRSLTTTVHELVTNSLDACEEA-GI----LPDIKVEIERIGKDHYKVIVEDNGPGIPEEQIPKVFGKMLYGSKFH-R--- 104 (538)
T ss_pred hhHHHHHHHHHHhcchhhHHhc-CC----CCceEEEEEecCCceEEEEEecCCCCCChhHhHHHHHHHhccchhh-h---
Confidence 4569999999999999999872 22 26789998765 78899999999999999999999976543 3321 0
Q ss_pred cccccCCCCCCccccChHHHHHHHHHhCCe-EEEEecCC-CceEEEEEeCCCCCCCCC
Q 017673 311 TDLAADKGTMAGYGYGLPISRLYARYFGGD-LQIISMEG-YGTDAYLHLSRLGDSQEP 366 (368)
Q Consensus 311 ~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~-i~v~s~~g-~Gt~f~i~lP~~~~~~e~ 366 (368)
...+.+-.|+|.+-|--+.+..-|+ +.|.|..+ .++...+.|....+.||+
T Consensus 105 -----~~QsRGqqGiGis~avLysQmTtGkPv~V~s~T~~s~~~~~~~l~id~~kNEp 157 (538)
T COG1389 105 -----NIQSRGQQGIGISAAVLYSQMTTGKPVRVISSTGDSGTAYEYELKIDVQKNEP 157 (538)
T ss_pred -----hhhccccccccHHHHHHHHHhcCCCceEEEecCCCCcceEEEEEEecCCCCcc
Confidence 1122345789999999999998885 56666644 377777777766666655
No 71
>PF13581 HATPase_c_2: Histidine kinase-like ATPase domain
Probab=98.78 E-value=5.6e-08 Score=77.24 Aligned_cols=95 Identities=21% Similarity=0.231 Sum_probs=72.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEEEEeCCCeEEEEEeeeCCCCCCCCcccccccccccCCCCCCccccc
Q 017673 234 SHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDL 313 (368)
Q Consensus 234 ~~l~~vl~nLl~NAi~~~~~~~~~~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~~~ 313 (368)
..+..++.+++.||++|+.... ..++|.|.+...++.+.|.|.|+|+|+++...+.-...-.
T Consensus 30 ~~~~lav~E~~~Nav~H~~~~~-----~~~~v~v~~~~~~~~l~i~v~D~G~~~d~~~~~~~~~~~~------------- 91 (125)
T PF13581_consen 30 DDLELAVSEALTNAVEHGYPGD-----PDGPVDVRLEVDPDRLRISVRDNGPGFDPEQLPQPDPWEP------------- 91 (125)
T ss_pred HHHHHHHHHHHHHHHHHcCCCC-----CCcEEEEEEEEcCCEEEEEEEECCCCCChhhccCcccccC-------------
Confidence 3688899999999999986521 1267999999999999999999999999886443221100
Q ss_pred ccCCCCCCccccChHHHHHHHHHhCCeEEEEecCCCceEEEEE
Q 017673 314 AADKGTMAGYGYGLPISRLYARYFGGDLQIISMEGYGTDAYLH 356 (368)
Q Consensus 314 ~~~~~~~~g~GlGL~i~k~iv~~~gG~i~v~s~~g~Gt~f~i~ 356 (368)
......|+||.+++.+++.+ .+ + .+.|+++++.
T Consensus 92 ----~~~~~~G~Gl~li~~l~D~~----~~-~-~~~gn~v~l~ 124 (125)
T PF13581_consen 92 ----DSLREGGRGLFLIRSLMDEV----DY-R-EDGGNTVTLR 124 (125)
T ss_pred ----CCCCCCCcCHHHHHHHHcEE----EE-E-CCCeEEEEEE
Confidence 11357899999999999875 44 4 5669998875
No 72
>COG2172 RsbW Anti-sigma regulatory factor (Ser/Thr protein kinase) [Signal transduction mechanisms]
Probab=98.54 E-value=1.3e-06 Score=70.93 Aligned_cols=96 Identities=21% Similarity=0.206 Sum_probs=70.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEEEEeCCCeEEEEEeeeCCCCCCCCcccccccccccCCCCCCccccc
Q 017673 234 SHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDL 313 (368)
Q Consensus 234 ~~l~~vl~nLl~NAi~~~~~~~~~~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~~~ 313 (368)
..+.-++.+++.||++|.-+.. +..++|.|.+...++.+.+.|.|.|+|+++ .+..+.+.+.+.+.
T Consensus 39 ~~l~~av~E~~~N~v~Ha~~~~----~~~g~I~i~~~~~~~~~~i~i~D~G~~~~~--~~~~~~~~~~~~~~-------- 104 (146)
T COG2172 39 ADLAIAVSEALTNAVKHAYKLD----PSEGEIRIEVSLDDGKLEIRIWDQGPGIED--LEESLGPGDTTAEG-------- 104 (146)
T ss_pred HHHHHHHHHHHHHHHHHHhhcC----CCCceEEEEEEEcCCeEEEEEEeCCCCCCC--HHHhcCCCCCCCcc--------
Confidence 4688899999999999986532 113789999999999999999999977764 45556666554433
Q ss_pred ccCCCCCCccccChHHHHHHHHHhCCeEEEEecCCCceEE
Q 017673 314 AADKGTMAGYGYGLPISRLYARYFGGDLQIISMEGYGTDA 353 (368)
Q Consensus 314 ~~~~~~~~g~GlGL~i~k~iv~~~gG~i~v~s~~g~Gt~f 353 (368)
....|+||++++++++ ++.+++..+.++++
T Consensus 105 ------~~~~G~Gl~l~~~~~D----~~~~~~~~~~~~~~ 134 (146)
T COG2172 105 ------LQEGGLGLFLAKRLMD----EFSYERSEDGRNRL 134 (146)
T ss_pred ------cccccccHHHHhhhhe----eEEEEeccCCceEE
Confidence 3466999999998775 47788555543333
No 73
>KOG0519 consensus Sensory transduction histidine kinase [Signal transduction mechanisms]
Probab=98.49 E-value=4.7e-08 Score=100.59 Aligned_cols=216 Identities=13% Similarity=0.057 Sum_probs=156.0
Q ss_pred HHHHHHHhccCchHHHHHHHHHHhcccCccccccChHHHHHHHHHHHHhhHHHHHhHHHHhhhcCCCCCCCcccccccCC
Q 017673 113 MIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIGQHVELHNPNPPPHCIGYIDTKM 192 (368)
Q Consensus 113 ~l~~~~~~~~~~l~~i~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~li~~~l~l~~~~~~~~~~~~~~~~~ 192 (368)
+...+.|++++|+.. ++..-+.. .........++............+++++++.++. ..+...+...++
T Consensus 224 ~~~~~sHeir~p~~~--~~~~~~~~-------t~~~~~~~~~~~~~~~~~~~~~s~ln~i~d~~~v--~~g~~~l~~~rf 292 (786)
T KOG0519|consen 224 FLATLSHEIRTPLNG--GMLGGLSD-------TDLDSDQRLILNTDRVSAKSLLSLLNDILDLSKV--ESGKGELVAKRF 292 (786)
T ss_pred hcccccceeeccccc--CcceEEec-------cccchHHHHHHHHHhhhccccchhHHHhhccccc--ccccceeeeeec
Confidence 666677888777664 11111111 1223455566666555666667789999999987 677788888999
Q ss_pred CHHHHHHHHHHHHHHHHHhhhCCCCceEEEcCCC--ceeeccchhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEEEE
Q 017673 193 SPVQVARNASEHARCVCLREYGSAPDFNIYGDPS--FTFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVA 270 (368)
Q Consensus 193 ~l~~li~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~d~~~l~~vl~nLl~NAi~~~~~~~~~~~~~~~~I~i~~~ 270 (368)
++..++..++..+...+..+ ...+....+.. -.+.+|+..+.|++.|++.||++++.. +.|.+++.
T Consensus 293 ~l~~ll~~~~~~~~e~~~~~---~~~l~~~~~~~~p~~v~~de~~~~qv~~n~v~naik~t~~---------~~i~~~~~ 360 (786)
T KOG0519|consen 293 DLRTLLNFVISLLSELSQAK---YAILVLDLSSGVPRNVRGDEARLRQVIANLVSNAIKFTHA---------GHLEESVI 360 (786)
T ss_pred chHhhhhhhhhhhHHHhhcC---CeEEEEecCCCCcceeeccceeeeeeehhhccceeccccc---------ceEEEEEE
Confidence 99999999999998888877 44444444433 458899999999999999999997755 45554443
Q ss_pred eCC------------------------------------------------CeEEEEEeeeCCCCCCCCccc-ccccccc
Q 017673 271 DGL------------------------------------------------EDVTIKVSDEGGGIPRSGLPK-IFTYLYS 301 (368)
Q Consensus 271 ~~~------------------------------------------------~~~~i~V~D~G~Gi~~~~~~~-if~~f~~ 301 (368)
... -.-.+.+.|+|.||+...... +|..|-.
T Consensus 361 ~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~q 440 (786)
T KOG0519|consen 361 AREELSESNDVLLRAKEEAHMAGKARIDFLQKMSHAMRAPRHNIISLLSLLLQDIVLSPDSGLEIQTVMRSSNVFTSLIQ 440 (786)
T ss_pred eehhcchhhHHHHhhhhhhhhccchhhhHHHHhccccccccccccccchhhHhheEeccCCceeEehhhhhhhHHHHHhc
Confidence 100 012356778888888876666 7777766
Q ss_pred cCCCCCCcccccccCCCCCCccccChHHHHHHHHHhCCeEEEEecCCCceEEEEEeCCCC
Q 017673 302 TARNPLDENTDLAADKGTMAGYGYGLPISRLYARYFGGDLQIISMEGYGTDAYLHLSRLG 361 (368)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~i~v~s~~g~Gt~f~i~lP~~~ 361 (368)
.... ..+..+|+|+|+.+++.+++..+|.+.+.+....|++|++.++...
T Consensus 441 ~~~~----------~~~~~~gt~~~~~i~~~l~~l~~~~~~~~~~~~~~~t~~~~~~~~~ 490 (786)
T KOG0519|consen 441 ADPD----------ITRLYGGTGLGESIVFSLVELMSGEISDISCISLGKTFSFTLDLLT 490 (786)
T ss_pred cccc----------cccccCCCcccchhhccHHHHHHHHhhhhhhhccCceeeEEEEecc
Confidence 6554 3455689999999999999999999999999888999988887653
No 74
>TIGR00585 mutl DNA mismatch repair protein MutL. All proteins in this family for which the functions are known are involved in the process of generalized mismatch repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.48 E-value=4.7e-07 Score=83.71 Aligned_cols=60 Identities=32% Similarity=0.315 Sum_probs=51.0
Q ss_pred hHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEEEEeCCCeEEEEEeeeCCCCCCCCcccccccccccCCC
Q 017673 235 HLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARN 305 (368)
Q Consensus 235 ~l~~vl~nLl~NAi~~~~~~~~~~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~ 305 (368)
.+.+++.|||.||++|. ...|.|.+.. ++...|.|.|+|.||+++.++++|++|++++..
T Consensus 22 ~~~~~l~eLi~Na~dA~----------a~~I~i~~~~-~~~~~i~V~DnG~Gi~~~~l~~~~~~~~tsk~~ 81 (312)
T TIGR00585 22 RPASVVKELVENSLDAG----------ATRIDVEIEE-GGLKLIEVSDNGSGIDKEDLPLACERHATSKIQ 81 (312)
T ss_pred hHHHHHHHHHHHHHHCC----------CCEEEEEEEe-CCEEEEEEEecCCCCCHHHHHHHhhCCCcCCCC
Confidence 58899999999999974 2578887764 345679999999999999999999999998765
No 75
>PF13589 HATPase_c_3: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PDB: 3IED_A 2XCM_B 2JKI_B 3OPD_A 2O1V_B 2GQP_A 2O1W_C 1YT2_A 1TC6_A 2H8M_B ....
Probab=98.03 E-value=1.7e-06 Score=69.95 Aligned_cols=101 Identities=23% Similarity=0.375 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEEEEeC-CCeEEEEEeeeCCCCCCCCcccccccccccCCCCCCccccccc
Q 017673 237 HLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADG-LEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAA 315 (368)
Q Consensus 237 ~~vl~nLl~NAi~~~~~~~~~~~~~~~~I~i~~~~~-~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~~~~~ 315 (368)
..+|.+||.||+++... .|.|.+... .+...|.|.|||.||+++.+..+|...++.+....
T Consensus 4 ~~al~ElI~Ns~DA~a~----------~I~I~i~~~~~~~~~i~I~DnG~Gm~~~~l~~~~~~g~s~k~~~~-------- 65 (137)
T PF13589_consen 4 EDALRELIDNSIDAGAT----------NIKISIDEDKKGERYIVIEDNGEGMSREDLESFFRIGRSSKKSEK-------- 65 (137)
T ss_dssp THHHHHHHHHHHHHHHH----------HEEEEEEEETTTTTEEEEEESSS---HHHHHHHTTCHHTHHHHHH--------
T ss_pred HHHHHHHHHHHHHccCC----------EEEEEEEcCCCCCcEEEEEECCcCCCHHHHHHhccccCCCCCchh--------
Confidence 57899999999999866 477777665 46679999999999999999998877766654100
Q ss_pred CCCCCCccccChHHHHHHHHHhCCeEEEEecC-CCceEEEEEeC
Q 017673 316 DKGTMAGYGYGLPISRLYARYFGGDLQIISME-GYGTDAYLHLS 358 (368)
Q Consensus 316 ~~~~~~g~GlGL~i~k~iv~~~gG~i~v~s~~-g~Gt~f~i~lP 358 (368)
.....+..|+|+..+ +-.++..+.+.|.. +....+.+..+
T Consensus 66 ~~~~~G~~G~G~k~A---~~~~~~~~~v~S~~~~~~~~~~~~~~ 106 (137)
T PF13589_consen 66 DRQSIGRFGIGLKLA---IFSLGDRVEVISKTNGESFTYTIDYD 106 (137)
T ss_dssp HGGGGGGGTSGCGGG---GGGTEEEEEEEEESTTSSSEEEEEEE
T ss_pred hhhcCCCcceEHHHH---HHHhcCEEEEEEEECCCCcEEEEEEe
Confidence 011234567773221 11357788888874 33345555554
No 76
>PRK00095 mutL DNA mismatch repair protein; Reviewed
Probab=97.89 E-value=2.6e-05 Score=78.62 Aligned_cols=60 Identities=28% Similarity=0.256 Sum_probs=51.3
Q ss_pred hHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEEEEeCCCeEEEEEeeeCCCCCCCCcccccccccccCCC
Q 017673 235 HLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARN 305 (368)
Q Consensus 235 ~l~~vl~nLl~NAi~~~~~~~~~~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~ 305 (368)
.+..++.+||+||++|. .+.|.|.+. .++...|+|.|||.||+++.++.+|.++++++-.
T Consensus 22 ~~~svvkElveNsiDAg----------at~I~v~i~-~~g~~~i~V~DnG~Gi~~~~~~~~~~~~~tsKi~ 81 (617)
T PRK00095 22 RPASVVKELVENALDAG----------ATRIDIEIE-EGGLKLIRVRDNGCGISKEDLALALARHATSKIA 81 (617)
T ss_pred CHHHHHHHHHHHHHhCC----------CCEEEEEEE-eCCeEEEEEEEcCCCCCHHHHHHHhhccCCCCCC
Confidence 57889999999999964 367888885 4567899999999999999999999998877654
No 77
>PRK05559 DNA topoisomerase IV subunit B; Reviewed
Probab=97.80 E-value=6e-05 Score=75.85 Aligned_cols=89 Identities=24% Similarity=0.262 Sum_probs=62.5
Q ss_pred cchhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEEEEeCCCeEEEEEeeeCCCCCCCCccc--------ccccccccC
Q 017673 232 VPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPK--------IFTYLYSTA 303 (368)
Q Consensus 232 d~~~l~~vl~nLl~NAi~~~~~~~~~~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~--------if~~f~~~~ 303 (368)
+...+..++.+||.||++....++ .+.|.|.+..++ .|+|.|||.|||.+..+. +|....++.
T Consensus 34 ~~~gl~~lv~EivdNaiDe~~ag~------a~~I~V~i~~dg---~I~V~DnGrGIP~~~~~~~~~~~~E~v~t~lhags 104 (631)
T PRK05559 34 DTRGLHHLVQEVIDNSVDEALAGH------GKRIEVTLHADG---SVSVRDNGRGIPVGIHPEEGKSGVEVILTKLHAGG 104 (631)
T ss_pred CCchhhhhhhhhhccccchhhcCC------CCEEEEEEeCCC---cEEEEEcCCCCCcccccccCCcchheeeeeccccC
Confidence 356799999999999999875522 478999987664 799999999999998887 777654433
Q ss_pred CCCCCcccccccCCCCCCccccChHHHHHHHH
Q 017673 304 RNPLDENTDLAADKGTMAGYGYGLPISRLYAR 335 (368)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~g~GlGL~i~k~iv~ 335 (368)
.-.. +....+.+-.|.|++.+..+.+
T Consensus 105 Kf~~------~~yk~SgGl~GvGls~vNalS~ 130 (631)
T PRK05559 105 KFSN------KAYKFSGGLHGVGVSVVNALSS 130 (631)
T ss_pred ccCC------ccccccCcccccchhhhhhhee
Confidence 2200 0011222337899998877644
No 78
>PF00512 HisKA: His Kinase A (phospho-acceptor) domain; InterPro: IPR003661 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the dimerisation and phosphoacceptor domain found in histidine kinases. It has been found in bacterial sensor protein/histidine kinases. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms []. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and the phosphotransfer from aspartyl phosphate back to ADP or to water []. The homodimeric domain includes the site of histidine autophosphorylation and phosphate transfer reactions. The structure of the homodimeric domain comprises a closed, four-helical bundle with a left-handed twist, formed by two identical alpha-hairpin subunits.; GO: 0000155 two-component sensor activity, 0007165 signal transduction, 0016020 membrane; PDB: 3DGE_A 2C2A_A 3A0R_A 4EW8_A 2LFS_B 2LFR_B 3JZ3_A 1JOY_B 3ZRW_C 3ZRV_A ....
Probab=97.78 E-value=6.2e-05 Score=52.61 Aligned_cols=63 Identities=17% Similarity=0.292 Sum_probs=51.9
Q ss_pred HHHHHHHHHhccCchHHHHHHHHHHhcccCccccccChHHHHHHHHHHHHhhHHHHHhHHHHhhhcCC
Q 017673 111 TQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIGQHVELHNP 178 (368)
Q Consensus 111 ~~~l~~~~~~~~~~l~~i~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~li~~~l~l~~~ 178 (368)
.+++..++||+|+||+.|.+.++.+..... ...+...++++.+..+..++..++++++++++.
T Consensus 3 ~~~~~~isHelr~PL~~i~~~~~~l~~~~~-----~~~~~~~~~l~~i~~~~~~l~~li~~ll~~sr~ 65 (68)
T PF00512_consen 3 GEFLASISHELRNPLTAIRGYLELLERDSD-----LDPEQLREYLDRIRSAADRLNELINDLLDFSRI 65 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCSSC-----C-HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHccC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 569999999999999999988887776111 124445899999999999999999999999886
No 79
>PRK05218 heat shock protein 90; Provisional
Probab=97.15 E-value=0.00074 Score=67.93 Aligned_cols=59 Identities=24% Similarity=0.339 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHhhcCC--------CCCCCCEEEEEEeCCCeEEEEEeeeCCCCCCCCccccccc
Q 017673 238 LMVFELVKNSLRAVEERYMDS--------DKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTY 298 (368)
Q Consensus 238 ~vl~nLl~NAi~~~~~~~~~~--------~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~ 298 (368)
-.+.+||+||.+|........ ......|.|.+ +.+...|.|.|||.||+.+++...|..
T Consensus 29 v~lRELiqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~--d~~~~~i~I~DnG~GMt~eel~~~l~~ 95 (613)
T PRK05218 29 IFLRELISNASDAIDKLRFEALTDPALYEGDGDLKIRISF--DKEARTLTISDNGIGMTREEVIENLGT 95 (613)
T ss_pred HHHHHHHhCHHHHHHHHHHHhccCccccCCCCCcEEEEEE--cCCCCeEEEEECCCCCCHHHHHHHHHh
Confidence 368999999999986432100 01123455544 333345999999999999988876543
No 80
>COG0323 MutL DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair]
Probab=97.04 E-value=0.00027 Score=71.14 Aligned_cols=59 Identities=32% Similarity=0.335 Sum_probs=47.6
Q ss_pred hHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEEEEeCCCeE-EEEEeeeCCCCCCCCcccccccccccCCC
Q 017673 235 HLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDV-TIKVSDEGGGIPRSGLPKIFTYLYSTARN 305 (368)
Q Consensus 235 ~l~~vl~nLl~NAi~~~~~~~~~~~~~~~~I~i~~~~~~~~~-~i~V~D~G~Gi~~~~~~~if~~f~~~~~~ 305 (368)
+-..|+.+|+.||+++.. ..|.|.+ +++++ .|+|+|||.||++++++-.+.++.|.|-.
T Consensus 23 rPaSVVKELVENSlDAGA----------t~I~I~v--e~gG~~~I~V~DNG~Gi~~~Dl~la~~rHaTSKI~ 82 (638)
T COG0323 23 RPASVVKELVENSLDAGA----------TRIDIEV--EGGGLKLIRVRDNGSGIDKEDLPLALLRHATSKIA 82 (638)
T ss_pred cHHHHHHHHHhcccccCC----------CEEEEEE--ccCCccEEEEEECCCCCCHHHHHHHHhhhccccCC
Confidence 456789999999999742 3566655 44444 59999999999999999999999988865
No 81
>smart00433 TOP2c TopoisomeraseII. Eukaryotic DNA topoisomerase II, GyrB, ParE
Probab=97.01 E-value=0.001 Score=66.76 Aligned_cols=48 Identities=31% Similarity=0.461 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEEEEeCCCeEEEEEeeeCCCCCCCCc
Q 017673 236 LHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGL 292 (368)
Q Consensus 236 l~~vl~nLl~NAi~~~~~~~~~~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~ 292 (368)
|.+++.+||.||+++....+ ...|.|.+..++ .|+|.|||.|||.+..
T Consensus 2 L~~~v~ElvdNAiD~~~~g~------at~I~V~i~~~g---~I~V~DnG~GIp~~~h 49 (594)
T smart00433 2 LHHLVDEIVDNAADEALAGY------MDTIKVTIDKDN---SISVEDNGRGIPVEIH 49 (594)
T ss_pred ceEEEeeehhcccchhccCC------CCEEEEEEeCCC---eEEEEEeCCceeCCcc
Confidence 44577889999999875532 478888887664 8999999999997543
No 82
>PRK05644 gyrB DNA gyrase subunit B; Validated
Probab=96.92 E-value=0.0014 Score=66.09 Aligned_cols=51 Identities=31% Similarity=0.508 Sum_probs=40.1
Q ss_pred cchhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEEEEeCCCeEEEEEeeeCCCCCCCC
Q 017673 232 VPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSG 291 (368)
Q Consensus 232 d~~~l~~vl~nLl~NAi~~~~~~~~~~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~ 291 (368)
++.-|..++.+||.||++-...++ ...|.|.+..++ .|+|.|||.|||.+.
T Consensus 34 ~~~gl~~~v~ElvdNaiDe~~ag~------a~~I~V~i~~~g---~I~V~DnG~GIp~~~ 84 (638)
T PRK05644 34 GERGLHHLVYEIVDNSIDEALAGY------CDHIEVTINEDG---SITVTDNGRGIPVDI 84 (638)
T ss_pred ChhhHHhhhHHhhhcccccccCCC------CCEEEEEEeCCC---cEEEEEeCccccCCc
Confidence 355789999999999998443311 368999987654 799999999999874
No 83
>PTZ00272 heat shock protein 83 kDa (Hsp83); Provisional
Probab=96.91 E-value=0.00095 Score=67.54 Aligned_cols=58 Identities=24% Similarity=0.327 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHhhcC----C--CCCCCCEEEEEEeCCCeEEEEEeeeCCCCCCCCccccc
Q 017673 239 MVFELVKNSLRAVEERYMD----S--DKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIF 296 (368)
Q Consensus 239 vl~nLl~NAi~~~~~~~~~----~--~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if 296 (368)
.+.+||+||.+|....... . ....+.+.|.+..+.+...+.|.|+|.||+++++.+-+
T Consensus 29 flRELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~i~~d~~~~~L~I~DnGiGMt~edl~~~L 92 (701)
T PTZ00272 29 FLRELISNASDACDKIRYQSLTDPSVLGESPRLCIRVVPDKENKTLTVEDNGIGMTKADLVNNL 92 (701)
T ss_pred hHHHHHhhHHHHHHHHHHHhcCCchhcCCCCceEEEEEEcCCCCEEEEEECCCCCCHHHHHHHh
Confidence 4789999999998653210 0 01135677777777777789999999999998755543
No 84
>TIGR01059 gyrB DNA gyrase, B subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV. Proteins scoring above the noise cutoff for this model and below the trusted cutoff for topoisomerase IV models probably should be designated GyrB.
Probab=96.72 E-value=0.0046 Score=62.89 Aligned_cols=51 Identities=31% Similarity=0.524 Sum_probs=39.4
Q ss_pred cchhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEEEEeCCCeEEEEEeeeCCCCCCCC
Q 017673 232 VPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSG 291 (368)
Q Consensus 232 d~~~l~~vl~nLl~NAi~~~~~~~~~~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~ 291 (368)
++.-|.+++.+||.||++....++ ...|.|.+..++ .|+|.|||.|||.+.
T Consensus 27 ~~~gl~~vv~Elv~NaiDe~~ag~------a~~I~V~i~~~g---~I~V~DnG~GIp~~~ 77 (654)
T TIGR01059 27 GETGLHHLVYEVVDNSIDEAMAGY------CDTINVTINDDG---SVTVEDNGRGIPVDI 77 (654)
T ss_pred CcchHHhhhHHhhhccccccccCC------CCEEEEEEeCCC---cEEEEEeCCCcCccc
Confidence 345799999999999998443311 378999887554 399999999999873
No 85
>PRK14083 HSP90 family protein; Provisional
Probab=96.61 E-value=0.0022 Score=64.03 Aligned_cols=58 Identities=24% Similarity=0.326 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCCCEEEEEEeCCCeEEEEEeeeCCCCCCCCccccc
Q 017673 238 LMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIF 296 (368)
Q Consensus 238 ~vl~nLl~NAi~~~~~~~~~~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if 296 (368)
..+.+||+||.+|...+........+.|.|.+. +.+...|.|+|||.||+.+++.+.|
T Consensus 26 iflrELiqNA~DA~~~~~~~~~~~~~~I~I~~~-d~~~~~l~I~DnGiGmt~eel~~~l 83 (601)
T PRK14083 26 VYVRELLQNAVDAITARRALDPTAPGRIRIELT-DAGGGTLIVEDNGIGLTEEEVHEFL 83 (601)
T ss_pred HHHHHHHHhHHHHHHhhhccCCCCCceEEEEEc-cCCCcEEEEEeCCCCCCHHHHHHHH
Confidence 468999999999987633222111356777764 4556789999999999999888765
No 86
>PTZ00130 heat shock protein 90; Provisional
Probab=96.49 E-value=0.0039 Score=63.60 Aligned_cols=55 Identities=22% Similarity=0.281 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHhhcCC------CCCCCCEEEEEEeCCCeEEEEEeeeCCCCCCCCccc
Q 017673 240 VFELVKNSLRAVEERYMDS------DKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPK 294 (368)
Q Consensus 240 l~nLl~NAi~~~~~~~~~~------~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~ 294 (368)
|.+||+||.+|........ ......+.|.+..+.+.-.|.|+|||.||+.+++..
T Consensus 93 LRELISNAsDAldKlr~~~lt~~~~~~~~~~~~I~I~~D~~~~tLtI~DnGIGMT~eEl~~ 153 (814)
T PTZ00130 93 LRELISNAADALEKIRFLSLSDESVLGEEKKLEIRISANKEKNILSITDTGIGMTKEDLIN 153 (814)
T ss_pred eehHhhhHHHHHHHHHHHHcCCchhcCCCCCceEEEEECCCCCEEEEEECCCCCCHHHHHH
Confidence 6789999999986321100 011234555555555455889999999999987554
No 87
>TIGR01055 parE_Gneg DNA topoisomerase IV, B subunit, proteobacterial. This protein is active as an alpha(2)beta(2) heterotetramer.
Probab=96.48 E-value=0.0047 Score=62.25 Aligned_cols=87 Identities=21% Similarity=0.255 Sum_probs=54.7
Q ss_pred hHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEEEEeCCCeEEEEEeeeCCCCCCCC--------cccccccccccCCCC
Q 017673 235 HLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSG--------LPKIFTYLYSTARNP 306 (368)
Q Consensus 235 ~l~~vl~nLl~NAi~~~~~~~~~~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~--------~~~if~~f~~~~~~~ 306 (368)
....++.+||.||++-...++ ...|.|.+..+ -.|+|.|||.|||.+. ++-+|...+++..-.
T Consensus 30 ~~~~lv~ElvdNsiDE~~ag~------a~~I~V~i~~d---~~I~V~DnGrGIp~~~h~~~g~~~~e~v~t~lhagsK~~ 100 (625)
T TIGR01055 30 RPNHLVQEVIDNSVDEALAGF------ASIIMVILHQD---QSIEVFDNGRGMPVDIHPKEGVSAVEVILTTLHAGGKFS 100 (625)
T ss_pred CcceeehhhhhcccchhhcCC------CCEEEEEEeCC---CeEEEEecCCccCcccccccCCcHHHHhhhcccccCCCC
Confidence 347788899999998433311 47888888655 3799999999999887 555562222221110
Q ss_pred CCcccccccCCCCCCccccChHHHHHHHHH
Q 017673 307 LDENTDLAADKGTMAGYGYGLPISRLYARY 336 (368)
Q Consensus 307 ~~~~~~~~~~~~~~~g~GlGL~i~k~iv~~ 336 (368)
-+....+.+-.|.||+.+..+.+.
T Consensus 101 ------~~~~~~SgG~~GvGls~vnalS~~ 124 (625)
T TIGR01055 101 ------NKNYHFSGGLHGVGISVVNALSKR 124 (625)
T ss_pred ------CCcceecCCCcchhHHHHHHhcCe
Confidence 000112233379999998887773
No 88
>cd00082 HisKA Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via trans-autophosphorylation by the catalytic domain of the histidine kinase. They subsequently transfer the phosphoryl group to the Asp acceptor residue of a response regulator protein. Two-component signalling systems, consisting of a histidine protein kinase that senses a signal input and a response regulator that mediates the output, are ancient and evolutionarily conserved signaling mechanisms in prokaryotes and eukaryotes.
Probab=96.42 E-value=0.028 Score=37.59 Aligned_cols=62 Identities=16% Similarity=0.237 Sum_probs=46.9
Q ss_pred HHHHHHHHHHhccCchHHHHHHHHHHhcccCccccccChHHHHHHHHHHHHhhHHHHHhHHHHhhhcC
Q 017673 110 FTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIGQHVELHN 177 (368)
Q Consensus 110 ~~~~l~~~~~~~~~~l~~i~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~li~~~l~l~~ 177 (368)
...++..+.|++++|+..+...+..+..... ..+.....++.+......+..++++++.+++
T Consensus 4 ~~~~~~~~~hel~~pl~~i~~~~~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 65 (65)
T cd00082 4 KGEFLANVSHELRTPLTAIRGALELLEEELL------DDEEQREYLERIREEAERLLRLINDLLDLSR 65 (65)
T ss_pred HHHHHHHHhHHhcchHHHHHHHHHHHHhccc------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4558888999999999999877766665433 1456677777777777888888988887753
No 89
>PRK14939 gyrB DNA gyrase subunit B; Provisional
Probab=96.39 E-value=0.0044 Score=63.29 Aligned_cols=49 Identities=31% Similarity=0.480 Sum_probs=39.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEEEEeCCCeEEEEEeeeCCCCCCCC
Q 017673 234 SHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSG 291 (368)
Q Consensus 234 ~~l~~vl~nLl~NAi~~~~~~~~~~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~ 291 (368)
.-|+.++.++++||++-...++ ...|.|.+..++ .|+|.|||.|||.+.
T Consensus 36 ~GLhhlv~EivdNaiDE~~AG~------a~~I~V~i~~dg---sIsV~DnGrGIPvd~ 84 (756)
T PRK14939 36 TGLHHMVYEVVDNAIDEALAGH------CDDITVTIHADG---SVSVSDNGRGIPTDI 84 (756)
T ss_pred cchhhhhhHhhcccccccccCC------CCEEEEEEcCCC---eEEEEEcCCcccCCc
Confidence 4699999999999998443322 478999987654 799999999999873
No 90
>TIGR01058 parE_Gpos DNA topoisomerase IV, B subunit, Gram-positive. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation step of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=96.38 E-value=0.009 Score=60.28 Aligned_cols=51 Identities=35% Similarity=0.531 Sum_probs=40.0
Q ss_pred cchhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEEEEeCCCeEEEEEeeeCCCCCCCC
Q 017673 232 VPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSG 291 (368)
Q Consensus 232 d~~~l~~vl~nLl~NAi~~~~~~~~~~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~ 291 (368)
++.-|.+++.++|+||++-....+ +..|.|.+..++ .|+|.|||.|||-+.
T Consensus 31 ~~~GL~hlv~EIvdNavDE~~ag~------~~~I~V~i~~dg---sitV~DnGrGIPv~~ 81 (637)
T TIGR01058 31 DSKGLHHLVWEIVDNSVDEVLAGY------ADNITVTLHKDN---SITVQDDGRGIPTGI 81 (637)
T ss_pred CcchhheehhhhhcchhhhhhcCC------CcEEEEEEcCCC---eEEEEECCCcccCcc
Confidence 356788999999999998655433 578999887544 799999999999753
No 91
>COG5381 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.00 E-value=0.0053 Score=48.42 Aligned_cols=49 Identities=16% Similarity=0.048 Sum_probs=40.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEEEEeCCCeEEEEEeeeCCCCCCCC
Q 017673 234 SHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSG 291 (368)
Q Consensus 234 ~~l~~vl~nLl~NAi~~~~~~~~~~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~ 291 (368)
..+..+..+||.||+||... ++|.|.+.-....+.+.|++.-++-....
T Consensus 62 hsvgYl~NELiENAVKfra~---------geIvieasl~s~~f~~kvsN~vd~~t~~~ 110 (184)
T COG5381 62 HSVGYLANELIENAVKFRAT---------GEIVIEASLYSHKFIFKVSNIVDLPTTID 110 (184)
T ss_pred hhHHHHHHHHHHhhhcccCC---------CcEEEEEEeccceEEEEecccCCCccHHH
Confidence 35778899999999999865 79999999888889999998766554444
No 92
>smart00388 HisKA His Kinase A (phosphoacceptor) domain. Dimerisation and phosphoacceptor domain of histidine kinases.
Probab=95.96 E-value=0.049 Score=36.63 Aligned_cols=61 Identities=13% Similarity=0.153 Sum_probs=45.4
Q ss_pred HHHHHHHHHhccCchHHHHHHHHHHhcccCccccccChHHHHHHHHHHHHhhHHHHHhHHHHhhhcCC
Q 017673 111 TQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIGQHVELHNP 178 (368)
Q Consensus 111 ~~~l~~~~~~~~~~l~~i~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~li~~~l~l~~~ 178 (368)
.+++..+.|++++||..+...+..+..... ......+++.+......+..++++++.+++.
T Consensus 3 ~~~~~~i~Hel~~pl~~i~~~~~~l~~~~~-------~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~ 63 (66)
T smart00388 3 REFLANLSHELRTPLTAIRGYLELLEDTEL-------SEEQREYLETILRSAERLLRLINDLLDLSRI 63 (66)
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHhCCC-------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 458888999999999999877755554111 2223677777777778888899999988765
No 93
>COG0326 HtpG Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones]
Probab=95.40 E-value=0.017 Score=57.11 Aligned_cols=55 Identities=20% Similarity=0.370 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHhhcCC------CCCCCCEEEEEEeCCCeEEEEEeeeCCCCCCCCcc
Q 017673 239 MVFELVKNSLRAVEERYMDS------DKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLP 293 (368)
Q Consensus 239 vl~nLl~NAi~~~~~~~~~~------~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~ 293 (368)
.|.+||+||.+|........ ....+.++|.+..+.+.-+++|+|||.||..+++.
T Consensus 31 FLRELISNAsDAidKlr~~al~~~~~~~~~~~~~I~i~~Dk~~kTLtI~DNGIGMT~~Ev~ 91 (623)
T COG0326 31 FLRELISNASDAIDKLRFEALSDPELGEGDSDLRIRISFDKDNKTLTISDNGIGMTKDEVI 91 (623)
T ss_pred HHHHHHhhhHHHHHHHHHHhccCccccCCCCCceEEEEEcccCCEEEEEeCCCCCCHHHHH
Confidence 57899999999997642111 11123566666667666789999999999987654
No 94
>PF10090 DUF2328: Uncharacterized protein conserved in bacteria (DUF2328); InterPro: IPR018762 Members of this family of hypothetical bacterial proteins have no known function.
Probab=94.65 E-value=1.6 Score=36.91 Aligned_cols=99 Identities=16% Similarity=0.171 Sum_probs=67.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEEEEeCCCeEEEEEeeeCCCCCCCCcccccccccccCCCCCCcccc
Q 017673 233 PSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTD 312 (368)
Q Consensus 233 ~~~l~~vl~nLl~NAi~~~~~~~~~~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~~ 312 (368)
|....+++.|++-=|..+.|. ||.|.|.+....+...++|.=+|+.+..+ +.+++-+-.....
T Consensus 83 ~k~~vklllnl~l~a~~alpr--------GG~i~V~~~~~~~~~~~~v~a~G~~~~~~--~~~~~~L~g~~~~------- 145 (182)
T PF10090_consen 83 PKPEVKLLLNLLLCAEDALPR--------GGEITVSIEGSEGDGGWRVRAEGPRARLD--PDLWAALAGEDPE------- 145 (182)
T ss_pred CHHHHHHHHHHHHHHHhhcCC--------CCEEEEEEeccCCCceEEEEEeccccCCC--HHHHHHhcCCCCC-------
Confidence 445668999999999998888 79999998888888888888888865433 1222222111100
Q ss_pred cccCCCCCCccccChHHHHHHHHHhCCeEEEEecCCCceEEEEE
Q 017673 313 LAADKGTMAGYGYGLPISRLYARYFGGDLQIISMEGYGTDAYLH 356 (368)
Q Consensus 313 ~~~~~~~~~g~GlGL~i~k~iv~~~gG~i~v~s~~g~Gt~f~i~ 356 (368)
........=-++...+++..|++|.++.. ++.+.|.
T Consensus 146 -----~~l~~~~VQ~~~~~~la~~~G~~l~~~~~---~~~i~l~ 181 (182)
T PF10090_consen 146 -----EDLDPRNVQFYLLPLLAREAGRRLSVEAT---EDAIVLT 181 (182)
T ss_pred -----CCCCHHhHHHHHHHHHHHHcCCeEEEEec---CCEEEEe
Confidence 11223444567888999999999998874 4455544
No 95
>COG0187 GyrB Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [DNA replication, recombination, and repair]
Probab=94.46 E-value=0.011 Score=58.14 Aligned_cols=87 Identities=30% Similarity=0.397 Sum_probs=56.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEEEEeCCCeEEEEEeeeCCCCCCCCcc--------cccccccccCCC
Q 017673 234 SHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLP--------KIFTYLYSTARN 305 (368)
Q Consensus 234 ~~l~~vl~nLl~NAi~~~~~~~~~~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~--------~if~~f~~~~~~ 305 (368)
.-|+.++.++++||++-.-..+ +..|.|++..++ .|+|.|||.|||-+.-+ -||....++..-
T Consensus 35 ~GLhHlv~EVvDNsiDEalaG~------~~~I~V~l~~d~---sisV~DnGRGIPvdiH~~~~~~~vEvI~T~LHAGGKF 105 (635)
T COG0187 35 RGLHHLVWEVVDNSIDEALAGY------ADRIDVTLHEDG---SISVEDNGRGIPVDIHPKEKVSAVEVIFTVLHAGGKF 105 (635)
T ss_pred CcceeeEeEeeechHhHHhhCc------CcEEEEEEcCCC---eEEEEECCCCCccccCCCCCCCceEEEEEeeccCccc
Confidence 5688888888888888776655 678999987665 69999999999977633 344433322211
Q ss_pred CCCcccccccCCCCCCccccChHHHHHHHH
Q 017673 306 PLDENTDLAADKGTMAGYGYGLPISRLYAR 335 (368)
Q Consensus 306 ~~~~~~~~~~~~~~~~g~GlGL~i~k~iv~ 335 (368)
+.+...-+.+=.|.|.++|..+-+
T Consensus 106 ------d~~~YkvSGGLHGVG~SVVNALS~ 129 (635)
T COG0187 106 ------DNDSYKVSGGLHGVGVSVVNALST 129 (635)
T ss_pred ------CCCccEeecCCCccceEEEecccc
Confidence 111122223347888887766544
No 96
>PLN03237 DNA topoisomerase 2; Provisional
Probab=94.00 E-value=0.13 Score=56.08 Aligned_cols=90 Identities=21% Similarity=0.328 Sum_probs=54.9
Q ss_pred hHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEEEEeCCCeEEEEEeeeCCCCCCCCcc--------cccccccccCCCC
Q 017673 235 HLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLP--------KIFTYLYSTARNP 306 (368)
Q Consensus 235 ~l~~vl~nLl~NAi~~~~~~~~~~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~--------~if~~f~~~~~~~ 306 (368)
-|..+|.++|.||++..... .....|.|.+..+++ .|+|.|||.|||-+.-+ -||....++..-
T Consensus 77 GL~kifdEIldNAvDe~~r~-----g~~~~I~V~I~~~~g--sIsV~DnGRGIPV~iH~~eg~~~pElIft~LhAGgkF- 148 (1465)
T PLN03237 77 GLYKIFDEILVNAADNKQRD-----PKMDSLRVVIDVEQN--LISVYNNGDGVPVEIHQEEGVYVPEMIFGHLLTSSNY- 148 (1465)
T ss_pred hhhhhHHHHhhhhHhHHhhc-----CCCCEEEEEEEcCCC--EEEEEecCccccCCCCCCCCCccceEEEEeeeccccC-
Confidence 48889999999999876321 115788888875544 59999999999976322 223322222211
Q ss_pred CCcccccccCCCCCCccccChHHHHHHHHHh
Q 017673 307 LDENTDLAADKGTMAGYGYGLPISRLYARYF 337 (368)
Q Consensus 307 ~~~~~~~~~~~~~~~g~GlGL~i~k~iv~~~ 337 (368)
+-+...-+++-.|+|.++|.-+-+.+
T Consensus 149 -----dd~~yKvSGGlhGVGasvvNaLS~~f 174 (1465)
T PLN03237 149 -----DDNEKKTTGGRNGYGAKLTNIFSTEF 174 (1465)
T ss_pred -----CCCcceeeccccccCccccccccCee
Confidence 00011222334789998887665543
No 97
>KOG1979 consensus DNA mismatch repair protein - MLH1 family [Replication, recombination and repair]
Probab=93.55 E-value=0.044 Score=53.18 Aligned_cols=56 Identities=29% Similarity=0.398 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCCCEEEEEEeCCCeEEEEEeeeCCCCCCCCcccccccccccCC
Q 017673 238 LMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTAR 304 (368)
Q Consensus 238 ~vl~nLl~NAi~~~~~~~~~~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~ 304 (368)
-++-+|+.|+++|. .+.|.|.+ .+++--.+.|+|||.||-.++++-+-++|-|.+-
T Consensus 30 NAlKEliENSLDA~----------ST~I~V~v-k~GGLKLlQisDnG~GI~reDl~ilCeRftTSKL 85 (694)
T KOG1979|consen 30 NALKELIENSLDAN----------STSIDVLV-KDGGLKLLQISDNGSGIRREDLPILCERFTTSKL 85 (694)
T ss_pred HHHHHHHhccccCC----------CceEEEEE-ecCCeEEEEEecCCCccchhhhHHHHHHhhhhhc
Confidence 36778889999874 24566654 3444557899999999999999999999987764
No 98
>PTZ00108 DNA topoisomerase 2-like protein; Provisional
Probab=93.49 E-value=0.11 Score=56.41 Aligned_cols=111 Identities=16% Similarity=0.254 Sum_probs=62.8
Q ss_pred hHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEEEEeCCCeEEEEEeeeCCCCCCCCcc--------cccccccccCCCC
Q 017673 235 HLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLP--------KIFTYLYSTARNP 306 (368)
Q Consensus 235 ~l~~vl~nLl~NAi~~~~~~~~~~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~--------~if~~f~~~~~~~ 306 (368)
-|..++.++|.||++...... ....+..|.|.+..+.+ .|+|.|||.|||-+.-+ -||....++..-
T Consensus 57 GL~ki~dEIldNAvDe~~r~~--~~g~~~~I~V~i~~d~g--~IsV~dnGrGIPv~~h~~~~~~~pElIft~L~aGgkf- 131 (1388)
T PTZ00108 57 GLYKIFDEILVNAADNKARDK--GGHRMTYIKVTIDEENG--EISVYNDGEGIPVQIHKEHKIYVPEMIFGHLLTSSNY- 131 (1388)
T ss_pred hhhhhHHHHhhhhhhhhcccC--CCCCccEEEEEEeccCC--eEEEEecCCcccCCCCCCCCCccceEEEEEeeccccC-
Confidence 488899999999998765210 00115778888876633 59999999999976432 233322222211
Q ss_pred CCcccccccCCCCCCccccChHHHHHHHHHhCCeEEEEecCC-CceEEEEEeCC
Q 017673 307 LDENTDLAADKGTMAGYGYGLPISRLYARYFGGDLQIISMEG-YGTDAYLHLSR 359 (368)
Q Consensus 307 ~~~~~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~i~v~s~~g-~Gt~f~i~lP~ 359 (368)
+-+...-+.+-.|+|.++|.-+-+. +.|+...+ .|-.|...+-.
T Consensus 132 -----dd~~yKvSGGlhGVGasvvNalS~~----f~Vev~r~~~gk~y~q~f~~ 176 (1388)
T PTZ00108 132 -----DDTEKRVTGGRNGFGAKLTNIFSTK----FTVECVDSKSGKKFKMTWTD 176 (1388)
T ss_pred -----CCCceeeecccccCCccccccccce----EEEEEEECCCCCEEEEEecC
Confidence 0001112233468999887765544 33333322 24555555543
No 99
>COG5385 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.32 E-value=3.8 Score=33.50 Aligned_cols=193 Identities=11% Similarity=0.114 Sum_probs=107.9
Q ss_pred HHHHHHHhccCchHHHHHHHHHHhcccCccccccChHHHHHHHHHHHHhhHHHHHhHHHHhhhcCCCC-CCCcccccccC
Q 017673 113 MIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIGQHVELHNPNP-PPHCIGYIDTK 191 (368)
Q Consensus 113 ~l~~~~~~~~~~l~~i~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~li~~~l~l~~~~~-~~~~~~~~~~~ 191 (368)
+-+++.||+-.|.+.|.+|+..|..+-. .++....+.. +... ....|.|+|... .++..+ ..
T Consensus 18 LcsRvCHDiISPvgAInnGLeLLdeg~a-------ddDAm~LIrs---SArn----as~rLqFaR~AFGAsgSag---~~ 80 (214)
T COG5385 18 LCSRVCHDIISPVGAINNGLELLDEGGA-------DDDAMDLIRS---SARN----ASVRLQFARLAFGASGSAG---AS 80 (214)
T ss_pred HHHHHHhhccCcHHHhhchhhhhccCCc-------cHHHHHHHHH---Hhhh----HHHHHHHHHHHhccccccc---cc
Confidence 6688999999999999999988776655 1222222222 1111 234455555521 223333 23
Q ss_pred CCHHHHHHHHHHHHHHHHHhhhCCCCceEEEcCCCceeeccchhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEEEEe
Q 017673 192 MSPVQVARNASEHARCVCLREYGSAPDFNIYGDPSFTFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVAD 271 (368)
Q Consensus 192 ~~l~~li~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~d~~~l~~vl~nLl~NAi~~~~~~~~~~~~~~~~I~i~~~~ 271 (368)
+|-.+.-. +. ...+.. ..+++...+...+ + |..=...+.||+.=|.-+.|. +|.+.+++..
T Consensus 81 iDtgeaek-~A---~~~~a~---ekpe~~W~g~r~~-~---~Kn~vkllLNl~lia~~aiPr--------GG~~~vtle~ 141 (214)
T COG5385 81 IDTGEAEK-AA---QDFFAN---EKPELTWNGPRAI-L---PKNRVKLLLNLFLIAYGAIPR--------GGSLVVTLEN 141 (214)
T ss_pred ccchhHHH-HH---HHHHhc---cCCcccccCChhh-c---CcchHHHHHHHHHHHcccCCC--------CCeeEEEeec
Confidence 44333211 11 111222 2456655543321 1 222335678888888777777 7999999987
Q ss_pred CCCeEEEEEeeeCCC--CCCCCcccccccccccCCCCCCcccccccCCCCCCccccChHHHHHHHHHhCCeEEEEecCCC
Q 017673 272 GLEDVTIKVSDEGGG--IPRSGLPKIFTYLYSTARNPLDENTDLAADKGTMAGYGYGLPISRLYARYFGGDLQIISMEGY 349 (368)
Q Consensus 272 ~~~~~~i~V~D~G~G--i~~~~~~~if~~f~~~~~~~~~~~~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~i~v~s~~g~ 349 (368)
.+..-+|+|.-.|+= .||+.++ .+++.+. .....+...--|..--+++.-|++|.++....
T Consensus 142 ~e~d~rfsi~akG~m~Rvppk~le-----l~~G~~~-----------eE~vdahsVQpyYt~lLa~eAgm~I~v~~~~e- 204 (214)
T COG5385 142 PETDARFSIIAKGRMMRVPPKFLE-----LHSGEPP-----------EEAVDAHSVQPYYTLLLAEEAGMTISVHATAE- 204 (214)
T ss_pred CCcCceEEEEecCccccCCHHHHh-----hhcCCCc-----------cccCCCccccHHHHHHHHHHcCCeEEEEeccc-
Confidence 666667777766653 3443322 2222211 01123444555667778899999999998654
Q ss_pred ceEEEEEeC
Q 017673 350 GTDAYLHLS 358 (368)
Q Consensus 350 Gt~f~i~lP 358 (368)
-..|+-..|
T Consensus 205 ~iv~~A~v~ 213 (214)
T COG5385 205 RIVFTAWVV 213 (214)
T ss_pred eEEEEEecc
Confidence 356655443
No 100
>KOG1978 consensus DNA mismatch repair protein - MLH2/PMS1/Pms2 family [Replication, recombination and repair]
Probab=93.17 E-value=0.067 Score=52.99 Aligned_cols=59 Identities=34% Similarity=0.321 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEEEEeCCCeEEEEEeeeCCCCCCCCcccccccccccCCC
Q 017673 236 LHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARN 305 (368)
Q Consensus 236 l~~vl~nLl~NAi~~~~~~~~~~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~ 305 (368)
+.-++.+|++|++++. ...|.|.+..- +.=.|.|+|||.||++...+-+-.++++.+-.
T Consensus 21 l~sAVKELvENSiDAG----------AT~I~I~~kdy-G~d~IEV~DNG~GI~~~n~~~l~lkh~TSKi~ 79 (672)
T KOG1978|consen 21 LVSAVKELVENSIDAG----------ATAIDIKVKDY-GSDSIEVSDNGSGISATDFEGLALKHTTSKIV 79 (672)
T ss_pred HHHHHHHHHhcCcccC----------CceeeEecCCC-CcceEEEecCCCCCCccchhhhhhhhhhhccc
Confidence 5688999999999975 34677776543 45579999999999999888877777777654
No 101
>PHA02569 39 DNA topoisomerase II large subunit; Provisional
Probab=93.04 E-value=0.067 Score=53.74 Aligned_cols=51 Identities=27% Similarity=0.383 Sum_probs=36.2
Q ss_pred hHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEEEEeCCCeEEEEEeeeCCCCCCCCc
Q 017673 235 HLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGL 292 (368)
Q Consensus 235 ~l~~vl~nLl~NAi~~~~~~~~~~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~ 292 (368)
-|..++.++|.||++...... ...+..|.|.+. ++ .|+|.|||.|||-+..
T Consensus 45 GL~hi~~EIldNavDe~~~~~---~g~~~~I~V~i~-dg---sisV~dnGrGIPv~~h 95 (602)
T PHA02569 45 GLVKIIDEIIDNSVDEAIRTN---FKFANKIDVTIK-NN---QVTVSDNGRGIPQAMV 95 (602)
T ss_pred cceeeeehhhhhhhhhhhccC---CCCCcEEEEEEc-CC---EEEEEECCCcccCCcc
Confidence 477888888888888654310 011467888886 33 5999999999997643
No 102
>PLN03128 DNA topoisomerase 2; Provisional
Probab=91.75 E-value=0.31 Score=52.41 Aligned_cols=50 Identities=20% Similarity=0.237 Sum_probs=38.1
Q ss_pred hHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEEEEeCCCeEEEEEeeeCCCCCCCC
Q 017673 235 HLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSG 291 (368)
Q Consensus 235 ~l~~vl~nLl~NAi~~~~~~~~~~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~ 291 (368)
-|..++.++|.||++..... +.+..|.|.+..+++ .|+|.|||.|||-+.
T Consensus 52 GL~ki~dEIldNAvDe~~~~-----g~~~~I~V~i~~~dg--sIsV~DnGrGIPv~i 101 (1135)
T PLN03128 52 GLYKIFDEILVNAADNKQRD-----PSMDSLKVDIDVEQN--TISVYNNGKGIPVEI 101 (1135)
T ss_pred hHHHHHHHHHHHHHHHhhhc-----CCCcEEEEEEEcCCC--eEEEEecCccccCCC
Confidence 58889999999999976321 115788888876433 699999999999763
No 103
>KOG1977 consensus DNA mismatch repair protein - MLH3 family [Replication, recombination and repair]
Probab=91.66 E-value=0.15 Score=50.76 Aligned_cols=59 Identities=29% Similarity=0.360 Sum_probs=48.9
Q ss_pred hHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEEEEeCCCeEEEEEeeeCCCCCCCCcccccccccccCCC
Q 017673 235 HLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARN 305 (368)
Q Consensus 235 ~l~~vl~nLl~NAi~~~~~~~~~~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~ 305 (368)
.|.|++.+|+-|++++. .-.|.+..+-..+.+.|.|+|.|+..+++..+-++||+.+-.
T Consensus 21 sla~~VeElv~NSiDA~------------At~V~v~V~~~t~sv~ViDdG~G~~rdDl~~lg~ry~TSK~h 79 (1142)
T KOG1977|consen 21 SLAQCVEELVLNSIDAE------------ATCVAVRVNMETFSVQVIDDGFGMGRDDLEKLGNRYFTSKCH 79 (1142)
T ss_pred HHHHHHHHHHhhccccC------------ceEEEEEecCceeEEEEEecCCCccHHHHHHHHhhhhhhhce
Confidence 58999999999999974 223444446667889999999999999999999999988755
No 104
>PTZ00109 DNA gyrase subunit b; Provisional
Probab=91.14 E-value=0.041 Score=56.77 Aligned_cols=51 Identities=25% Similarity=0.430 Sum_probs=39.3
Q ss_pred cchhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEEEEeCCCeEEEEEeeeCCCCCCCC
Q 017673 232 VPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSG 291 (368)
Q Consensus 232 d~~~l~~vl~nLl~NAi~~~~~~~~~~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~ 291 (368)
+..-|++++.++|+||++-....+ +..|.|.+..++ .|+|.|+|.|||-+.
T Consensus 126 ~~~GLhhLv~EIlDNSVDE~laG~------~~~I~V~i~~Dg---sItV~DnGRGIPvd~ 176 (903)
T PTZ00109 126 DEKGLHQLLFEILDNSVDEYLAGE------CNKITVVLHKDG---SVEISDNGRGIPCDV 176 (903)
T ss_pred CCCcceEEEEEEeeccchhhccCC------CcEEEEEEcCCC---eEEEEeCCccccccc
Confidence 344688888889999998665433 678999886654 699999999999754
No 105
>KOG0020 consensus Endoplasmic reticulum glucose-regulated protein (GRP94/endoplasmin), HSP90 family [Posttranslational modification, protein turnover, chaperones]
Probab=68.23 E-value=5 Score=38.71 Aligned_cols=54 Identities=22% Similarity=0.333 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHhh----cCC--CCCCCCEEEEEEeCCCeEEEEEeeeCCCCCCCCc
Q 017673 239 MVFELVKNSLRAVEERY----MDS--DKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGL 292 (368)
Q Consensus 239 vl~nLl~NAi~~~~~~~----~~~--~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~ 292 (368)
.+.+||+||-.+...-. .+. -.......|.+..+...-.+.|.|+|.||..+.+
T Consensus 99 FLRELISNASDAlDKIRllaLtd~~~L~~~~el~ikIK~Dke~klLhi~DtGiGMT~edL 158 (785)
T KOG0020|consen 99 FLRELISNASDALDKIRLLALTDKDVLGETEELEIKIKADKEKKLLHITDTGIGMTREDL 158 (785)
T ss_pred HHHHHHhhhhhhhhheeeeeccChhHhCcCcceEEEEeechhhCeeeEecccCCccHHHH
Confidence 46789999998874300 000 0113456666666666678999999999997653
No 106
>KOG0019 consensus Molecular chaperone (HSP90 family) [Posttranslational modification, protein turnover, chaperones]
Probab=62.71 E-value=8.1 Score=38.34 Aligned_cols=58 Identities=24% Similarity=0.371 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhcC----CCCCCCCEEEEEEeCCCeEEEEEeeeCCCCCCCCcc
Q 017673 236 LHLMVFELVKNSLRAVEERYMD----SDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLP 293 (368)
Q Consensus 236 l~~vl~nLl~NAi~~~~~~~~~----~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~ 293 (368)
-+.-+..||+||-+|...-+.. ....++...|.+..+.+.-.++|.|+|.||..+++.
T Consensus 58 kEvFlRELISNaSDAldKiRy~~lt~~~~~~~~l~I~i~~nk~~~tlti~DtGIGMTk~dLv 119 (656)
T KOG0019|consen 58 KEVFLRELISNASDALEKLRYLELKGDEKALPELEIRIITNKDKRTITIQDTGIGMTKEDLV 119 (656)
T ss_pred hHHHHHhhhccccchHHHHHHHhhcCccccccceeEEeccCCCcceEEEEecCCCcCHHHHH
Confidence 3445788999998887642211 011146777888777778899999999999987654
No 107
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=56.09 E-value=49 Score=22.27 Aligned_cols=47 Identities=17% Similarity=0.321 Sum_probs=31.4
Q ss_pred chhHHHHHHHHHHHHHhccCchHHHHHHHHHHhcccCccccccChHHHHHHHHHHHHh
Q 017673 104 TSDERDFTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDRFYMS 161 (368)
Q Consensus 104 ~~~~~~~~~~l~~~~~~~~~~l~~i~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~ 161 (368)
....+.+...++...||+.|-|..|. |+.++.. .++..+++..+...
T Consensus 6 ~~~~~~~~~~lR~~RHD~~NhLqvI~-gllqlg~----------~~~a~eYi~~~~~~ 52 (62)
T PF14689_consen 6 LEELEELIDSLRAQRHDFLNHLQVIY-GLLQLGK----------YEEAKEYIKELSKD 52 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHTT-----------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHH-HHHHCCC----------HHHHHHHHHHHHHH
Confidence 33445566788999999999999999 5544442 44566666665443
No 108
>PF07568 HisKA_2: Histidine kinase; InterPro: IPR011495 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This is the dimerisation and phosphoacceptor domain of a subfamily of histidine kinases. It shares sequence similarity with IPR003661 from INTERPRO and IPR011102 from INTERPRO. It is usually found adjacent to a C-terminal ATPase domain (IPR003594 from INTERPRO). This domain is found in a wide range of bacteria and also several archaea.
Probab=56.01 E-value=69 Score=22.53 Aligned_cols=73 Identities=15% Similarity=0.151 Sum_probs=40.2
Q ss_pred HHHhccCchHHHHHHHHHHhcccCccccccChHHHHHHHHHHHHhhHHHHHhHHHHhhhcCCCCCCCcccccccCCCHHH
Q 017673 117 IKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIGQHVELHNPNPPPHCIGYIDTKMSPVQ 196 (368)
Q Consensus 117 ~~~~~~~~l~~i~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~li~~~l~l~~~~~~~~~~~~~~~~~~l~~ 196 (368)
+.|+.+|.|..+++.+ .+...-. ..++....+.... +++..-..+.+.|.-+.. ...+++.+
T Consensus 2 ~~HRVkNnLq~i~sll-~lq~~~~------~~~e~~~~L~~~~-~RI~aia~vh~~L~~~~~----------~~~v~l~~ 63 (76)
T PF07568_consen 2 LHHRVKNNLQIISSLL-RLQARRS------EDPEAREALEDAQ-NRIQAIALVHEQLYQSED----------LSEVDLRE 63 (76)
T ss_pred hHHhHHhHHHHHHHHH-HHHHhcC------CCHHHHHHHHHHH-HHHHHHHHHHHHHhcCCC----------CCeecHHH
Confidence 5788999999998555 3322222 1234444444422 222222234444433322 24789999
Q ss_pred HHHHHHHHHHH
Q 017673 197 VARNASEHARC 207 (368)
Q Consensus 197 li~~~~~~~~~ 207 (368)
.+++++..+..
T Consensus 64 yl~~L~~~l~~ 74 (76)
T PF07568_consen 64 YLEELCEDLRQ 74 (76)
T ss_pred HHHHHHHHHHH
Confidence 99999887654
No 109
>KOG0355 consensus DNA topoisomerase type II [Chromatin structure and dynamics]
Probab=53.67 E-value=15 Score=37.90 Aligned_cols=50 Identities=22% Similarity=0.286 Sum_probs=35.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEEEEeCCCeEEEEEeeeCCCCCCCC
Q 017673 234 SHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSG 291 (368)
Q Consensus 234 ~~l~~vl~nLl~NAi~~~~~~~~~~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~ 291 (368)
.-|++|+.+++.||.. -.. +.....|.+.+..+. -.++|.|||.|||-+.
T Consensus 52 pGl~ki~dEilvNaad-k~r-----d~~m~~i~v~i~~e~--~~isv~nnGkGIPv~~ 101 (842)
T KOG0355|consen 52 PGLYKIFDEILVNAAD-KQR-----DPKMNTIKVTIDKEK--NEISVYNNGKGIPVTI 101 (842)
T ss_pred CcHHHHHHHHhhcccc-ccc-----CCCcceeEEEEccCC--CEEEEEeCCCcceeee
Confidence 3589999999999998 322 111355666665444 4799999999999664
No 110
>COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms]
Probab=52.86 E-value=42 Score=33.54 Aligned_cols=40 Identities=20% Similarity=0.399 Sum_probs=28.7
Q ss_pred HHHHHHHhccCchHHHHHHH-HHHhcccCccccccChHHHHHHHHH
Q 017673 113 MIKAIKVRHNNVVPMMALGL-QQLKKEMDPKIVYEDLDEIHQFLDR 157 (368)
Q Consensus 113 ~l~~~~~~~~~~l~~i~~~~-~~l~~~~~~~~~~~~~~~~~~~l~~ 157 (368)
+++.-+. ..|+.|+.++ ||+++|+. .+....++...++++
T Consensus 375 LvQA~kL---A~LGQmSA~iaHElNQPLa--aiRt~adna~~lLer 415 (603)
T COG4191 375 LVQAGKL---AALGQMSAGIAHELNQPLA--AIRTYADNARLLLER 415 (603)
T ss_pred HHHHHHH---HHHHHHHHHHHHHhcCcHH--HHHhHHHHHHHHHHc
Confidence 5444444 7889999999 99999999 555555566655555
No 111
>COG2865 Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen [Transcription]
Probab=45.53 E-value=48 Score=32.38 Aligned_cols=105 Identities=18% Similarity=0.109 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCCCEEEEEEeCCCeEEEEEeeeCCCCCCCCcccccccccccCCCCCCcccccc---
Q 017673 238 LMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLA--- 314 (368)
Q Consensus 238 ~vl~nLl~NAi~~~~~~~~~~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~~~~--- 314 (368)
.++.+++.||+-|-.= ... +..|.|.+..+ +|.|.+.|.-.+.-....+.. +.+.... +.++
T Consensus 273 ~alREai~NAv~HRDY--s~~---~~~v~I~iydD----RieI~NPGgl~~gi~~~~l~~-~~s~~RN-----p~LA~~l 337 (467)
T COG2865 273 EALREAIINAVIHRDY--SIR---GRNVHIEIYDD----RIEITNPGGLPPGITPEDLLK-GRSKSRN-----PVLAKVL 337 (467)
T ss_pred HHHHHHHHHHHHhhcc--ccC---CCceEEEEECC----eEEEECCCCCCCCCChhHccc-CCCcccC-----HHHHHHH
Confidence 5789999999988642 111 34899988776 688888775333333333322 2211111 0000
Q ss_pred cCCCCCCccccChHHHHHHHHHhCCe-EEEEecCCCceEEEEEeCCC
Q 017673 315 ADKGTMAGYGYGLPISRLYARYFGGD-LQIISMEGYGTDAYLHLSRL 360 (368)
Q Consensus 315 ~~~~~~~g~GlGL~i~k~iv~~~gG~-i~v~s~~g~Gt~f~i~lP~~ 360 (368)
.+..-....|-|+.-++.+++.||.. ..+... ...|++.++..
T Consensus 338 ~~~~liE~~GSGi~rm~~~~~~~gl~~p~f~~~---~~~~~~~~~~~ 381 (467)
T COG2865 338 RDMGLIEERGSGIRRMFDLMEENGLPKPEFEED---NDYVTVILHGK 381 (467)
T ss_pred HHhhhHHHhCccHHHHHHHHHHcCCCCceeecc---CCeEEEEEecc
Confidence 00111235788999999999999874 344332 33455555543
No 112
>COG0813 DeoD Purine-nucleoside phosphorylase [Nucleotide transport and metabolism]
Probab=45.51 E-value=30 Score=29.97 Aligned_cols=55 Identities=20% Similarity=0.216 Sum_probs=39.0
Q ss_pred CCceeeccchhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEEEEeCCCeEEEEEeeeCCCCCC
Q 017673 225 PSFTFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPR 289 (368)
Q Consensus 225 ~~~~~~~d~~~l~~vl~nLl~NAi~~~~~~~~~~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~ 289 (368)
+.+.+++||-+-+.+-.|.+.|++.++.-+ +-.-.+-.-. +-.++|.-+|.|||.
T Consensus 15 ~~VLmPGDPlRAK~iAetfLe~~~~vnevR--------~mlgfTGtYK--Gk~iSvmg~GmGipS 69 (236)
T COG0813 15 EVVLMPGDPLRAKYIAETFLENAVCVNEVR--------GMLGFTGTYK--GKKISVMGHGMGIPS 69 (236)
T ss_pred ceeecCCCCchHHHHHHHHHhhhhhhhhhc--------chhcccceec--CcEEEEEEecCCCcc
Confidence 345578999999999999999999998653 2222222222 236788888999886
No 113
>PF07492 Trehalase_Ca-bi: Neutral trehalase Ca2+ binding domain; InterPro: IPR011120 Neutral trehalases mobilise trehalose accumulated by fungal cells as a protective and storage carbohydrate. This family represents a calcium-binding domain similar to EF hand. Residues 97 and 108 in O42893 from SWISSPROT have been implicated in this interaction. It is thought that this domain may provide a general mechanism for regulating neutral trehalase activity in yeasts and filamentous fungi [].; GO: 0004555 alpha,alpha-trehalase activity, 0005509 calcium ion binding, 0005993 trehalose catabolic process, 0005737 cytoplasm
Probab=42.38 E-value=21 Score=20.16 Aligned_cols=15 Identities=20% Similarity=0.275 Sum_probs=11.6
Q ss_pred CCCeEEEEEeeeCCC
Q 017673 272 GLEDVTIKVSDEGGG 286 (368)
Q Consensus 272 ~~~~~~i~V~D~G~G 286 (368)
.++...|+|.|+||-
T Consensus 10 TDgn~qITIeD~GPK 24 (30)
T PF07492_consen 10 TDGNFQITIEDTGPK 24 (30)
T ss_pred cCCCcEEEEecCCCe
Confidence 355678999999973
No 114
>PF01106 NifU: NifU-like domain; InterPro: IPR001075 Iron-sulphur (FeS) clusters are important cofactors for numerous proteins involved in electron transfer, in redox and non-redox catalysis, in gene regulation, and as sensors of oxygen and iron. These functions depend on the various FeS cluster prosthetic groups, the most common being [2Fe-2S] and [4Fe-4S] []. FeS cluster assembly is a complex process involving the mobilisation of Fe and S atoms from storage sources, their assembly into [Fe-S] form, their transport to specific cellular locations, and their transfer to recipient apoproteins. So far, three FeS assembly machineries have been identified, which are capable of synthesising all types of [Fe-S] clusters: ISC (iron-sulphur cluster), SUF (sulphur assimilation), and NIF (nitrogen fixation) systems. The ISC system is conserved in eubacteria and eukaryotes (mitochondria), and has broad specificity, targeting general FeS proteins [, ]. It is encoded by the isc operon (iscRSUA-hscBA-fdx-iscX). IscS is a cysteine desulphurase, which obtains S from cysteine (converting it to alanine) and serves as a S donor for FeS cluster assembly. IscU and IscA act as scaffolds to accept S and Fe atoms, assembling clusters and transfering them to recipient apoproteins. HscA is a molecular chaperone and HscB is a co-chaperone. Fdx is a [2Fe-2S]-type ferredoxin. IscR is a transcription factor that regulates expression of the isc operon. IscX (also known as YfhJ) appears to interact with IscS and may function as an Fe donor during cluster assembly []. The SUF system is an alternative pathway to the ISC system that operates under iron starvation and oxidative stress. It is found in eubacteria, archaea and eukaryotes (plastids). The SUF system is encoded by the suf operon (sufABCDSE), and the six encoded proteins are arranged into two complexes (SufSE and SufBCD) and one protein (SufA). SufS is a pyridoxal-phosphate (PLP) protein displaying cysteine desulphurase activity. SufE acts as a scaffold protein that accepts S from SufS and donates it to SufA []. SufC is an ATPase with an unorthodox ATP-binding cassette (ABC)-like component. No specific functions have been assigned to SufB and SufD. SufA is homologous to IscA [], acting as a scaffold protein in which Fe and S atoms are assembled into [FeS] cluster forms, which can then easily be transferred to apoproteins targets. In the NIF system, NifS and NifU are required for the formation of metalloclusters of nitrogenase in Azotobacter vinelandii, and other organisms, as well as in the maturation of other FeS proteins. Nitrogenase catalyses the fixation of nitrogen. It contains a complex cluster, the FeMo cofactor, which contains molybdenum, Fe and S. NifS is a cysteine desulphurase. NifU binds one Fe atom at its N-terminal, assembling an FeS cluster that is transferred to nitrogenase apoproteins []. Nif proteins involved in the formation of FeS clusters can also be found in organisms that do not fix nitrogen []. This entry represents the C-terminal of NifU and homologous proteins. NifU contains two domains: an N-terminal (IPR002871 from INTERPRO) and a C-terminal domain []. These domains exist either together or on different polypeptides, both domains being found in organisms that do not fix nitrogen (e.g. yeast), so they have a broader significance in the cell than nitrogen fixation. ; GO: 0005506 iron ion binding, 0051536 iron-sulfur cluster binding, 0016226 iron-sulfur cluster assembly; PDB: 2JNV_A 2Z51_A 1TH5_A 1VEH_A 1XHJ_A.
Probab=39.52 E-value=47 Score=22.89 Aligned_cols=27 Identities=26% Similarity=0.536 Sum_probs=21.5
Q ss_pred HHHHHHHhCCeEEEEecCCCceEEEEEeC
Q 017673 330 SRLYARYFGGDLQIISMEGYGTDAYLHLS 358 (368)
Q Consensus 330 ~k~iv~~~gG~i~v~s~~g~Gt~f~i~lP 358 (368)
+|-.+..|||++.+....+. +++|.|.
T Consensus 8 IrP~L~~dGGdv~lv~v~~~--~V~V~l~ 34 (68)
T PF01106_consen 8 IRPYLQSDGGDVELVDVDDG--VVYVRLT 34 (68)
T ss_dssp CHHHHHHTTEEEEEEEEETT--EEEEEEE
T ss_pred hChHHHhcCCcEEEEEecCC--EEEEEEE
Confidence 56678899999999998774 6777774
No 115
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=33.64 E-value=1.8e+02 Score=26.25 Aligned_cols=54 Identities=17% Similarity=0.242 Sum_probs=30.3
Q ss_pred HHHHHHHHHhHHHHHHHHHHHhcCCccccCChhHHHHHHHHHHHHHHhhcCCCCCCchh
Q 017673 48 ISAQFLHKELPIRIARRAIELETLPYGLSEKPAVLKVRDWYLDSFRDLRSFPDIRSTSD 106 (368)
Q Consensus 48 ~~~~~~~~~l~~rv~~r~~~l~~~~~~l~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~ 106 (368)
+.++--.++-+.|+.+|-.++..+.-.|..+. .+|+.+-.+++.++-.++++++
T Consensus 71 RHLkakLkes~~~l~dRetEI~eLksQL~RMr-----EDWIEEECHRVEAQLALKEARk 124 (305)
T PF15290_consen 71 RHLKAKLKESENRLHDRETEIDELKSQLARMR-----EDWIEEECHRVEAQLALKEARK 124 (305)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH
Confidence 44444456777778888777776655555422 3466666666554433333333
No 116
>PF03891 DUF333: Domain of unknown function (DUF333); InterPro: IPR005590 This family consists of bacterial proteins whose function has not been characterised.
Probab=32.80 E-value=1.3e+02 Score=19.39 Aligned_cols=31 Identities=23% Similarity=0.232 Sum_probs=24.5
Q ss_pred HHHHHHHhCCeEEEEecCCCceEEEEEeCCC
Q 017673 330 SRLYARYFGGDLQIISMEGYGTDAYLHLSRL 360 (368)
Q Consensus 330 ~k~iv~~~gG~i~v~s~~g~Gt~f~i~lP~~ 360 (368)
+...+..+||++.+.+.+.++..=...||..
T Consensus 7 As~yC~~~GG~~~~~~~~~G~~~g~C~lpdG 37 (50)
T PF03891_consen 7 ASVYCVEQGGKLEIRKQPDGSQVGYCVLPDG 37 (50)
T ss_pred HHHHHHHhCCEEEEEEcCCCCeEeEEECCCC
Confidence 4567889999999999887557777888854
No 117
>PF09182 PuR_N: Bacterial purine repressor, N-terminal; InterPro: IPR015265 The N-terminal domain of the bacterial purine repressor PuR is a winged-helix domain, a subdivision of the HTH structural family. It consists of a canonical arrangement of secondary structures: a1-b1-a2-T-a3-b2-W-b3, where a2-T-a3 is the HTH motif, a3 is the recognition helix, and W is the wing. The domain allows for recognition of a conserved CGAA sequence in the centre of a DNA PurBox, resulting in binding to the major groove of DNA []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1O57_B 1P4A_D.
Probab=30.73 E-value=99 Score=21.52 Aligned_cols=28 Identities=18% Similarity=0.161 Sum_probs=21.0
Q ss_pred hHHHHHHHHHhC-CeEEEEecCCCceEEE
Q 017673 327 LPISRLYARYFG-GDLQIISMEGYGTDAY 354 (368)
Q Consensus 327 L~i~k~iv~~~g-G~i~v~s~~g~Gt~f~ 354 (368)
|.|+|...+..| |.|...+-..+|..|.
T Consensus 41 l~iik~~~~~~g~G~ieT~~GaaGGv~yi 69 (70)
T PF09182_consen 41 LSIIKETFEKEGLGRIETVPGAAGGVRYI 69 (70)
T ss_dssp HHHHHHHHHHTTSEEEEEE-STT-EEEEE
T ss_pred HHHHHHHHHHcCCceEEEecCCCCCeEeC
Confidence 789999998888 8888777766788773
No 118
>PF00367 PTS_EIIB: phosphotransferase system, EIIB; InterPro: IPR018113 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred to enzyme-I (EI) of PTS which in turn transfers it to a phosphoryl carrier protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease which consists of at least three structurally distinct domains (IIA, IIB, and IIC) [] which can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA) carries the first permease-specific phoshorylation site, a histidine, which is phosphorylated by phospho-HPr. The second domain (IIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the permease. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate in a process catalyzed by the IIC domain; this process is coupled to the transmembrane transport of the sugar. This entry covers the phosphorylation site of EIIB domains. ; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity; PDB: 3IPJ_B 3BP3_A 1O2F_B 3BP8_C 1IBA_A.
Probab=27.49 E-value=65 Score=18.98 Aligned_cols=30 Identities=17% Similarity=0.231 Sum_probs=23.0
Q ss_pred HHHHHHHhCCeEEEEecCCCceEEEEEeCC
Q 017673 330 SRLYARYFGGDLQIISMEGYGTDAYLHLSR 359 (368)
Q Consensus 330 ~k~iv~~~gG~i~v~s~~g~Gt~f~i~lP~ 359 (368)
++.|++..||.=.+.+....-|..++.+..
T Consensus 1 A~~il~~lGG~~NI~~v~~C~TRLR~~v~d 30 (35)
T PF00367_consen 1 AKQILEALGGKENIKSVTNCATRLRFTVKD 30 (35)
T ss_dssp HHHHHHHCTTCCCEEEEEE-SSEEEEEEST
T ss_pred ChHHHHHhCCHHHHHHHhcCcceEEEEecC
Confidence 578999999987777776667888887754
No 119
>KOG4013 consensus Predicted Cu2+ homeostasis protein CutC [Inorganic ion transport and metabolism]
Probab=22.65 E-value=77 Score=26.89 Aligned_cols=19 Identities=21% Similarity=0.426 Sum_probs=17.4
Q ss_pred ChHHHHHHHHHhCCeEEEE
Q 017673 326 GLPISRLYARYFGGDLQII 344 (368)
Q Consensus 326 GL~i~k~iv~~~gG~i~v~ 344 (368)
|+++.+++++.|.|+|.+-
T Consensus 166 Gv~~i~~lie~hkg~i~Vm 184 (255)
T KOG4013|consen 166 GVYIIRELIELHKGKIDVM 184 (255)
T ss_pred chHHHHHHHHHhcCCEEEe
Confidence 8999999999999999764
No 120
>KOG3938 consensus RGS-GAIP interacting protein GIPC, contains PDZ domain [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=20.35 E-value=1e+02 Score=27.48 Aligned_cols=27 Identities=15% Similarity=0.377 Sum_probs=22.8
Q ss_pred CCCEEEEEEeCCCeEEEEEeeeCCCCC
Q 017673 262 APPIRIIVADGLEDVTIKVSDEGGGIP 288 (368)
Q Consensus 262 ~~~I~i~~~~~~~~~~i~V~D~G~Gi~ 288 (368)
+..-+|.+.++.+.+-++|.|||.|..
T Consensus 125 Gq~kEv~v~KsedalGlTITDNG~GyA 151 (334)
T KOG3938|consen 125 GQAKEVEVVKSEDALGLTITDNGAGYA 151 (334)
T ss_pred CcceeEEEEecccccceEEeeCCccee
Confidence 456778888889999999999999964
Done!