Query 017673
Match_columns 368
No_of_seqs 239 out of 2880
Neff 9.4
Searched_HMMs 29240
Date Mon Mar 25 03:07:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017673.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017673hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gkz_A [3-methyl-2-oxobutanoat 100.0 2.5E-49 8.6E-54 376.1 34.1 344 16-367 27-380 (388)
2 2q8g_A [pyruvate dehydrogenase 100.0 6.9E-45 2.4E-49 347.5 33.2 351 5-368 4-372 (407)
3 2e0a_A Pyruvate dehydrogenase 100.0 4.8E-44 1.7E-48 340.2 36.2 342 14-368 3-359 (394)
4 1y8o_A [pyruvate dehydrogenase 100.0 2.8E-44 9.5E-49 344.3 31.6 352 5-368 16-383 (419)
5 2btz_A Pyruvate dehydrogenase 100.0 5.9E-44 2E-48 339.7 30.8 341 14-368 3-359 (394)
6 2c2a_A Sensor histidine kinase 100.0 1.1E-35 3.9E-40 266.5 19.1 228 110-361 20-249 (258)
7 4ew8_A Sensor protein DIVL; si 100.0 1.2E-32 4E-37 248.0 20.6 220 110-364 40-260 (268)
8 3a0r_A Sensor protein; four he 100.0 6.6E-32 2.2E-36 252.1 17.0 220 104-362 126-347 (349)
9 3jz3_A Sensor protein QSEC; he 100.0 6.8E-33 2.3E-37 242.2 9.5 215 112-362 4-219 (222)
10 3d36_A Sporulation kinase B; G 100.0 7.2E-32 2.4E-36 239.1 15.4 218 106-362 10-227 (244)
11 4fpp_A Phosphotransferase; fou 100.0 1.2E-29 3.9E-34 225.9 16.0 197 113-359 49-247 (247)
12 1id0_A PHOQ histidine kinase; 100.0 2E-27 7E-32 195.2 16.3 147 190-363 2-148 (152)
13 3a0y_A Sensor protein; ATP-LID 99.9 1.2E-26 4.1E-31 190.4 15.9 146 189-362 3-150 (152)
14 1ysr_A Sensor-type histidine k 99.9 4E-27 1.4E-31 193.1 10.6 145 189-360 5-149 (150)
15 1bxd_A ENVZ(290-450), protein 99.9 7.4E-26 2.5E-30 187.8 15.0 145 189-362 7-152 (161)
16 3sl2_A Sensor histidine kinase 99.9 4.3E-26 1.5E-30 192.3 12.1 149 191-361 2-153 (177)
17 1b3q_A Protein (chemotaxis pro 99.9 3.3E-26 1.1E-30 215.8 11.6 209 110-361 10-249 (379)
18 1r62_A Nitrogen regulation pro 99.9 1.3E-25 4.5E-30 185.7 9.9 144 189-360 5-159 (160)
19 1i58_A Chemotaxis protein CHEA 99.9 3.7E-25 1.3E-29 188.6 7.3 156 190-359 3-188 (189)
20 3ehh_A Sensor kinase (YOCF pro 99.9 1.8E-23 6E-28 182.1 17.9 189 108-360 26-216 (218)
21 3ehg_A Sensor kinase (YOCF pro 99.9 2.3E-21 8E-26 154.4 12.8 123 192-360 2-126 (128)
22 3zxo_A Redox sensor histidine 99.8 7.3E-21 2.5E-25 151.5 9.1 123 190-360 3-128 (129)
23 3zxq_A Hypoxia sensor histidin 99.8 4.8E-20 1.7E-24 145.7 9.6 120 193-360 2-123 (124)
24 1th8_A Anti-sigma F factor; SP 99.8 5.4E-19 1.8E-23 143.7 8.1 107 231-362 35-141 (145)
25 1mu5_A Type II DNA topoisomera 99.7 2.6E-18 9E-23 164.6 9.2 116 228-360 25-148 (471)
26 2zbk_B Type 2 DNA topoisomeras 99.7 3.2E-18 1.1E-22 165.8 9.0 119 225-360 20-147 (530)
27 2q2e_B Type 2 DNA topoisomeras 99.6 2E-15 6.9E-20 148.2 8.8 120 228-360 30-154 (621)
28 1h7s_A PMS1 protein homolog 2; 98.9 3.7E-09 1.3E-13 98.0 7.6 60 235-305 34-93 (365)
29 3na3_A DNA mismatch repair pro 98.8 1.1E-08 3.7E-13 93.8 8.2 60 235-305 28-87 (348)
30 1kij_A DNA gyrase subunit B; t 98.7 1.9E-08 6.5E-13 94.1 7.5 87 231-336 32-126 (390)
31 3ke6_A Protein RV1364C/MT1410; 98.7 2E-08 7E-13 94.8 7.6 90 234-360 296-386 (399)
32 1b63_A MUTL; DNA mismatch repa 98.7 9.4E-09 3.2E-13 94.4 4.1 84 235-333 24-107 (333)
33 3h4l_A DNA mismatch repair pro 98.6 5.7E-08 1.9E-12 89.8 7.8 60 235-305 25-84 (367)
34 1ixm_A SPO0B, protein (sporula 98.6 1.2E-06 4.1E-11 73.6 14.8 157 101-301 12-171 (192)
35 2wer_A ATP-dependent molecular 98.4 6.6E-08 2.2E-12 83.5 2.5 122 238-360 29-180 (220)
36 1qy5_A Endoplasmin; GRP94, NEC 98.3 8.9E-08 3E-12 84.6 -0.7 122 238-359 31-185 (269)
37 1yc1_A HSP 86, heat shock prot 98.2 6.9E-07 2.4E-11 78.8 4.4 122 238-359 71-220 (264)
38 2ior_A Chaperone protein HTPG; 98.1 3.3E-07 1.1E-11 79.8 -0.8 62 238-301 50-119 (235)
39 1s16_A Topoisomerase IV subuni 98.0 1.1E-05 3.8E-10 75.2 7.0 84 237-335 33-124 (390)
40 3t0h_A Heat shock protein HSP 97.9 2.5E-06 8.4E-11 73.5 1.7 62 238-299 35-102 (228)
41 2gqp_A Endoplasmin; GRP94, HSP 97.9 2.7E-06 9.2E-11 73.9 1.5 60 238-299 35-102 (236)
42 1ei1_A DNA gyrase B, GYRB; ATP 97.9 2.7E-05 9.3E-10 72.6 8.2 86 235-335 34-127 (391)
43 3o0i_A HSP90AA1 protein; HSP90 97.8 3.2E-06 1.1E-10 73.7 0.2 60 238-297 63-128 (256)
44 4duh_A DNA gyrase subunit B; s 97.7 8.6E-05 2.9E-09 63.5 7.7 86 234-334 34-127 (220)
45 3peh_A Endoplasmin homolog; st 97.6 1.6E-05 5.5E-10 70.0 2.0 57 238-294 49-111 (281)
46 1y4s_A Chaperone protein HTPG; 97.6 7.1E-05 2.4E-09 72.7 6.4 120 238-359 30-182 (559)
47 3nmq_A Heat shock protein HSP 97.6 9.8E-06 3.4E-10 69.9 0.2 57 238-294 42-104 (239)
48 2cg9_A ATP-dependent molecular 97.5 6.6E-05 2.2E-09 74.2 4.6 119 238-359 29-179 (677)
49 3cwv_A DNA gyrase, B subunit, 97.5 0.00016 5.4E-09 66.9 6.7 53 232-296 27-79 (369)
50 4emv_A DNA topoisomerase IV, B 97.5 0.00013 4.5E-09 62.5 5.5 87 233-334 38-131 (226)
51 1zxm_A TOPO IIA ATPase, DNA to 97.4 0.00033 1.1E-08 65.4 7.2 86 234-333 51-145 (400)
52 2o1u_A Endoplasmin; GRP94, HSP 97.3 5.1E-05 1.8E-09 75.0 1.7 121 238-360 48-203 (666)
53 3fv5_A DNA topoisomerase 4 sub 97.3 0.00026 8.8E-09 59.8 5.4 48 237-293 19-66 (201)
54 3ttz_A DNA gyrase subunit B; p 97.3 0.00042 1.4E-08 58.2 6.3 51 232-291 28-78 (198)
55 2ioq_A Chaperone protein HTPG; 97.2 6E-05 2E-09 74.2 0.7 120 238-359 30-182 (624)
56 1pvg_A DNA topoisomerase II; G 97.2 0.001 3.5E-08 62.4 8.3 87 235-335 64-159 (418)
57 3ied_A Heat shock protein; HSP 97.2 6E-05 2.1E-09 65.1 -0.1 31 264-296 120-150 (272)
58 3lnu_A Topoisomerase IV subuni 96.9 0.00068 2.3E-08 63.1 4.8 48 237-293 52-99 (408)
59 3zcc_A HAMP, osmolarity sensor 95.3 0.24 8.1E-06 36.3 10.8 79 78-176 36-114 (114)
60 4gfh_A DNA topoisomerase 2; to 94.3 0.13 4.3E-06 54.5 9.0 88 235-335 59-154 (1177)
61 3zrx_A AF1503 protein, osmolar 92.7 1.5 5.2E-05 31.7 10.6 81 77-177 35-115 (115)
62 3lmm_A Uncharacterized protein 69.8 7.8 0.00027 37.8 6.5 104 237-360 298-408 (583)
63 4avr_A PA4485; unknown functio 27.7 60 0.0021 23.1 3.5 28 262-289 39-66 (95)
64 1xhj_A Nitrogen fixation prote 25.5 1.1E+02 0.0038 21.3 4.6 29 328-358 17-45 (88)
No 1
>1gkz_A [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase; transferase, mitochondrial protein kinase, potassium; HET: ADP; 2.2A {Rattus norvegicus} SCOP: a.29.5.1 d.122.1.4 PDB: 1gjv_A 1gkx_A*
Probab=100.00 E-value=2.5e-49 Score=376.09 Aligned_cols=344 Identities=33% Similarity=0.649 Sum_probs=288.9
Q ss_pred HHHHhhhcCCCCCcCHHHHHhcCCCCChHHHHHHHHHHHHHhHHHHHHHHHHHhcCCccccCChhHHHHHHHHHHHHHHh
Q 017673 16 EEVGRWGCMKQTGVSLRYMMEFGSKPTDKNLLISAQFLHKELPIRIARRAIELETLPYGLSEKPAVLKVRDWYLDSFRDL 95 (368)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~rv~~r~~~l~~~~~~l~~~~~i~~~~~~~~~~~~~l 95 (368)
..|.+|+.++..++|+++|+.|+..++...++.++++++++|+.|+++++++++.+++.+..++++..+.++|.++++++
T Consensus 27 ~~i~~~~~~~~~~~sl~~l~~~g~~~~~~~ll~s~~~l~~elp~rla~ri~~l~~lp~~~~~~~~i~~~~~~~~~~~~~l 106 (388)
T 1gkz_A 27 SAIDVVAEKPSVRLTPTMMLYSGRSQDGSHLLKSGRYLQQELPVRIAHRIKGFRSLPFIIGCNPTILHVHELYIRAFQKL 106 (388)
T ss_dssp -----------CEESSSCEECCCCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHcCCCCCcCHHHHHHhCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHhhhcCchHHHHHHHHHHHHHHH
Confidence 46778999999999999999999998888999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCchhHHHHHHHHHHHHHhccCchHHHHHHHHHHhcccCccccccChHHHHHHHHHHHHhhHHHHHhHHHHhhh
Q 017673 96 RSFPDIRSTSDERDFTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIGQHVEL 175 (368)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~li~~~l~l 175 (368)
+....++..++++++.++++.+.|++++||..|+.++.++..... ..+...++++.+..++.+++.|+++++++
T Consensus 107 ~~~~~~~~~~~~~~~~~~l~~i~helrtpL~~i~~g~~~l~~~~~------~~~~~~~~l~~i~~~~~~l~~li~~ll~l 180 (388)
T 1gkz_A 107 TDFPPIKDQADEAQYCQLVRQLLDDHKDVVTLLAEGLRESRKHIE------DEKLVRYFLDKTLTSRLGIRMLATHHLAL 180 (388)
T ss_dssp HHSCCCCSHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHSSSSCC------STTHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HhCcCCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhcc------CcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998888888999999999999999999999999988887765433 35678999999999999999999999999
Q ss_pred cCCCCCCCcccccccCCCHHHHHHHHHHHHHHHHHhhhCCCCceEEEcCCCceeeccchhHHHHHHHHHHHHHHHHHHhh
Q 017673 176 HNPNPPPHCIGYIDTKMSPVQVARNASEHARCVCLREYGSAPDFNIYGDPSFTFPYVPSHLHLMVFELVKNSLRAVEERY 255 (368)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~d~~~l~~vl~nLl~NAi~~~~~~~ 255 (368)
++. +.+.+++..+.+++.+++++++..+...+..+++..+.+.+.++.+..+.+|+.+|.+||.|||+||++|+.+++
T Consensus 181 ~~~--~~~~~~~~~~~~~l~~li~~~~~~~~~~~~~~~g~~~~i~i~~~~~~~~~~~~~~L~~il~NLl~NAik~~~~~~ 258 (388)
T 1gkz_A 181 HED--KPDFVGIICTRLSPKKIIEKWVDFARRLCEHKYGNAPRVRINGHVAARFPFIPMPLDYILPELLKNAMRATMESH 258 (388)
T ss_dssp TSC--CTTEETTEEEEECHHHHHHHHHHHHHHHHHHHHSCCCCEEEEESTTCCEEECCHHHHHHHHHHHHHHHHHHHHTC
T ss_pred hcc--CCCccceecCCCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEccCCCceeecHHHHHHHHHHHHHHHHHHhhccc
Confidence 998 677788888999999999999999999999998888899998888888999999999999999999999998832
Q ss_pred cCCCCCCCCEEEEEEeCCCeEEEEEeeeCCCCCCCCcccccccccccCCCCCCc---ccccc-------cCCCCCCcccc
Q 017673 256 MDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDE---NTDLA-------ADKGTMAGYGY 325 (368)
Q Consensus 256 ~~~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~---~~~~~-------~~~~~~~g~Gl 325 (368)
.......++|.|.+...++.+.|+|+|+|+|||++.+++||++||+++...... ...++ ...+...|+||
T Consensus 259 ~~~~~~~~~I~I~~~~~~~~v~i~V~D~G~GI~~~~~~~iF~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~GL 338 (388)
T 1gkz_A 259 LDTPYNVPDVVITIANNDVDLIIRISDRGGGIAHKDLDRVMDYHFTTAEASTQDPRISPLFGHLDMHSGGQSGPMHGFGF 338 (388)
T ss_dssp TTCTTSCCCEEEEEEECSSEEEEEEECCSCCCCTTTTTTTTSTTCCCC-------------------------CCSCSSC
T ss_pred cCCCCCCCCEEEEEEeCCCEEEEEEEEeCCCcCHHHHHHhcCcccccCCCcccccccccchhhcccccccCCCCcCCccC
Confidence 211111248999999999999999999999999999999999999998641000 00000 01223469999
Q ss_pred ChHHHHHHHHHhCCeEEEEecCCCceEEEEEeCCCCCCCCCC
Q 017673 326 GLPISRLYARYFGGDLQIISMEGYGTDAYLHLSRLGDSQEPL 367 (368)
Q Consensus 326 GL~i~k~iv~~~gG~i~v~s~~g~Gt~f~i~lP~~~~~~e~~ 367 (368)
||+|||.+++.|||+|++.|.+|+||+|+|+||+.+...++.
T Consensus 339 GL~i~r~i~~~~gG~i~v~s~~g~Gt~f~i~LP~~~~~~~~~ 380 (388)
T 1gkz_A 339 GLPTSRAYAEYLGGSLQLQSLQGIGTDVYLRLRHIDGREESF 380 (388)
T ss_dssp HHHHHHHHHHHTTCEEEEEEETTTEEEEEEEEECSSSCCC--
T ss_pred CHHHHHHHHHHhCCEEEEEecCCCcEEEEEEecCCCCCCCCC
Confidence 999999999999999999999999999999999987766554
No 2
>2q8g_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; GHKL ATPase/kinase family, pyruvate dehydrogenase complex, mitochondrial kinase; HET: AZX; 1.90A {Homo sapiens} PDB: 2q8f_A* 2q8h_A
Probab=100.00 E-value=6.9e-45 Score=347.48 Aligned_cols=351 Identities=38% Similarity=0.638 Sum_probs=274.2
Q ss_pred hhhHHhhHHHHHHHHhhhcCCCCCcCHHHHHhcC-CCCChHHHHHHHHHHHHHhHHHHHHHHHHHhcCCccccCChhHHH
Q 017673 5 KLSETFSKSLIEEVGRWGCMKQTGVSLRYMMEFG-SKPTDKNLLISAQFLHKELPIRIARRAIELETLPYGLSEKPAVLK 83 (368)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~l~~rv~~r~~~l~~~~~~l~~~~~i~~ 83 (368)
++--++.+++...|..|+.+++.++|+++|+.|| ..+++.. ++.|++.+++.|+++++++++.+++.+..++.+.+
T Consensus 4 ~~~~~~~~~~~~~i~~~~~~~~~~~sl~~~~~~g~~~~~~~~---s~~fl~~elPirla~~~~~i~~l~~~~~~~~~~~e 80 (407)
T 2q8g_A 4 GSSPASERGVPGQVDFYARFSPSPLSMKQFLDFGSVNACEKT---SFMFLRQELPVRLANIMKEISLLPDNLLRTPSVQL 80 (407)
T ss_dssp --------CHHHHHHHHHTSCCCCCBHHHHHHHHHTTCCHHH---HHHHHHHHHHHHHHHHHHHHTTSCHHHHTSHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHcCCCCCCCHHHHHHhCCCCCCHhH---HHHHHHHHHHHHHHHHHHHHHhCchhhhcChhHHH
Confidence 4556788899999999999999999999999999 6777665 88999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCCchhHHHHHHHHHHHHHhccC-----chHHHHHHHHHHhcccCccccccChHHHHHHHHHH
Q 017673 84 VRDWYLDSFRDLRSFPDIRSTSDERDFTQMIKAIKVRHNN-----VVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDRF 158 (368)
Q Consensus 84 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~l~~i~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~ 158 (368)
+..+|.++|+.+....+. ..++++....+...+ ||+|+ ||+.+.+.+. +...... -....+.+..+++.+
T Consensus 81 v~~~l~~s~n~m~~~~~~-~~~~~~~~~~f~~~~-HeLrt~~~~vPLt~i~g~~e-ll~~~~~--~~~~~~~~~~~l~~~ 155 (407)
T 2q8g_A 81 VQSWYIQSLQELLDFKDK-SAEDAKAIYDFTDTV-IRIRNRHNDVIPTMAQGVIE-YKESFGV--DPVTSQNVQYFLDRF 155 (407)
T ss_dssp HHHHHHHHHHHHHTTSSS-CTTCHHHHHHHHHHH-HHHHHHTTTHHHHHHHHHHH-HHHHC----CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhchhc-CccchHHHHHHHHHH-HHHHhhhccchHHHHHHHHH-HHHhhcc--CccCHHHHHHHHHHH
Confidence 999999999999886442 222233334455555 99999 9999995555 4433210 011246778889986
Q ss_pred HHhhHHHHHhHHHHhhhcCCCC-----CCCcccccccCCCHHHHHHHHHHHHHHHHHhhhCCCCceEEEc------CCCc
Q 017673 159 YMSRIGIRMLIGQHVELHNPNP-----PPHCIGYIDTKMSPVQVARNASEHARCVCLREYGSAPDFNIYG------DPSF 227 (368)
Q Consensus 159 ~~~~~~~~~li~~~l~l~~~~~-----~~~~~~~~~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~~~~------~~~~ 227 (368)
+..+...+++|++++++++... ....++...+.+++.+++++++..+...+..+|+..+.+.+.. +.+.
T Consensus 156 ~~~~~~~rlli~~ll~l~~~e~~~~~~~~~~~~~~~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~ 235 (407)
T 2q8g_A 156 YMSRISIRMLLNQHSLLFGGKGKGSPSHRKHIGSINPNCNVLEVIKDGYENARRLCDLYYINSPELELEELNAKSPGQPI 235 (407)
T ss_dssp HHHHHHHHHHHHHHHHHHC----------CCBTTBEEEEEHHHHHHHHHHHHHHHHHHHHSCCCCEEEEEEESSSTTSCC
T ss_pred HHHHHHHHHHHHHHHHHhccccccCCCCccccccccCCCCHHHHHHHHHHHHHHHHHHhcCCCCceEEEEeecCCCCCCe
Confidence 6666666669999999998832 1235667788999999999999999999998877666777665 5567
Q ss_pred eeeccchhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEEEEeCCCeEEEEEeeeCCCCCCCCcccccccccccCCCCC
Q 017673 228 TFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPL 307 (368)
Q Consensus 228 ~~~~d~~~l~~vl~nLl~NAi~~~~~~~~~~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~ 307 (368)
.+.+|+.+|.+||.|||+||++|+.++++.. ...++|.|.+...++.+.|.|+|+|+|||++.+++||++||+++....
T Consensus 236 ~v~~d~~~L~~il~NLl~NAik~t~~~~~~~-~~~~~I~I~~~~~~~~v~i~V~D~G~GI~~e~~~~if~~f~~~~~~~~ 314 (407)
T 2q8g_A 236 QVVYVPSHLYHMVFELFKNAMRATMEHHANR-GVYPPIQVHVTLGNEDLTVKMSDRGGGVPLRKIDRLFNYMYSTAPRPR 314 (407)
T ss_dssp EEEECHHHHHHHHHHHHHHHHHHHHHHSTTT-CCCCCEEEEEEECSSEEEEEEEECSCCCCHHHHGGGGCTTTTCCCCCC
T ss_pred EEEEcHHHHHHHHHHHHHHHHHHHhhccccC-CCCCCEEEEEEeCCCEEEEEEEecCCCCCHHHHHHHhCccccCCCCCC
Confidence 7999999999999999999999998842111 112489999999999999999999999999999999999999876410
Q ss_pred CcccccccCCCCCCccccChHHHHHHHHHhCCeEEEEecCCCceEEEEEeCCCC-CCCCCCC
Q 017673 308 DENTDLAADKGTMAGYGYGLPISRLYARYFGGDLQIISMEGYGTDAYLHLSRLG-DSQEPLP 368 (368)
Q Consensus 308 ~~~~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~i~v~s~~g~Gt~f~i~lP~~~-~~~e~~~ 368 (368)
.. +...+...|+||||+|||.+++.|||+|++.|.+|+||+|+|.||..+ ...|++|
T Consensus 315 ~~----~~~~~~~~G~GLGL~Ivr~i~~~~gG~i~v~s~~g~Gt~f~i~LP~~~~~~~e~~p 372 (407)
T 2q8g_A 315 VE----TSRAVPLAGFGYGLPISRLYAQYFQGDLKLYSLEGYGTDAVIYIKALSTDSIERLP 372 (407)
T ss_dssp SS----CCSCCCSSCTTCHHHHHHHHHHHTTCEEEEEEETTTEEEEEEEEESSGGGCBCCCC
T ss_pred cc----ccCCCCCCCcCCCHHHHHHHHHHhCCEEEEEEcCCCceEEEEEECCCCCCCCCCCC
Confidence 00 001223469999999999999999999999999999999999999986 5566655
No 3
>2e0a_A Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP-binding, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: ANP; 1.86A {Homo sapiens} PDB: 2zdx_A* 2zdy_A* 2zkj_A* 3d2r_A*
Probab=100.00 E-value=4.8e-44 Score=340.20 Aligned_cols=342 Identities=38% Similarity=0.662 Sum_probs=265.5
Q ss_pred HHHHHHhhhcCCCCCcCHHHHHhcC-CCCChHHHHHHHHHHHHHhHHHHHHHHHHHhcCCccccCChhHHHHHHHHHHHH
Q 017673 14 LIEEVGRWGCMKQTGVSLRYMMEFG-SKPTDKNLLISAQFLHKELPIRIARRAIELETLPYGLSEKPAVLKVRDWYLDSF 92 (368)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~l~~rv~~r~~~l~~~~~~l~~~~~i~~~~~~~~~~~ 92 (368)
+...|.+|+.+++.|+|+++|+.|| .++.+.+ ++.+++++|+.|+++++++++.+++.+..++.+.++..+|.++|
T Consensus 3 ~~~~~~~~~~~~~~~~sl~~l~~fg~~~~~~~~---s~~~l~~el~~rla~~~~~l~~l~~~l~~~~~~~ev~~~l~~s~ 79 (394)
T 2e0a_A 3 VPREVEHFSRYSPSPLSMKQLLDFGSENACERT---SFAFLRQELPVRLANILKEIDILPTQLVNTSSVQLVKSWYIQSL 79 (394)
T ss_dssp CCHHHHHHTTSCCCCCBHHHHHHTTC---CHHH---HHHHHHHHHHHHHHHHHHHHTTSCHHHHTSHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHcCCCCCCcHHHHHHhCCCCCCHHH---HHHHHHHHHHHHHHHHHHHHHhccHhhhcCchHHHHHHHHHHHH
Confidence 4467899999999999999999999 5666665 88999999999999999999999999999999999999999999
Q ss_pred HHhhcCCCCCCchhHHHHHHHHHHHHHhccC-----chHHHHHHHHHHhcccCccccccChHHHHHHHHHHHHhhHHHHH
Q 017673 93 RDLRSFPDIRSTSDERDFTQMIKAIKVRHNN-----VVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDRFYMSRIGIRM 167 (368)
Q Consensus 93 ~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~l~~i~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 167 (368)
+++....+.. .++++.. +++..+.||+|+ |++.+.+.+. +..... .-....+.+..+++++...+...++
T Consensus 80 ~~l~~~~~~~-~~~~~~~-~~~~~~~HeLrtpl~~vPlt~i~g~~e-l~~~~~--~~~~~~~~~~~~l~~~~i~~~~~rl 154 (394)
T 2e0a_A 80 MDLVEFHEKS-PDDQKAL-SDFVDTLIKVRNRHHNVVPTMAQGIIE-YKDACT--VDPVTNQNLQYFLDRFYMNRISTRM 154 (394)
T ss_dssp HHHHTTSSSC-TTCHHHH-HHHHHHHHHHHHHHTTHHHHHHHHHHH-HHTTSC--CCTTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccccC-ccchHHH-HHHHHHHHHHHhhhhhhHHHHHHHHHH-HHhhhc--cCcccHHHHHHHHHHHHHHHHHHHH
Confidence 9998875432 2222222 245556799999 7877785554 554332 1123456788999964444444444
Q ss_pred hHHHHhh-hcCC-CCCCCcccccccCCCHHHHHHHHHHHHHHHHHhhhCCCCceEEEc------CCCceeeccchhHHHH
Q 017673 168 LIGQHVE-LHNP-NPPPHCIGYIDTKMSPVQVARNASEHARCVCLREYGSAPDFNIYG------DPSFTFPYVPSHLHLM 239 (368)
Q Consensus 168 li~~~l~-l~~~-~~~~~~~~~~~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~~~~------~~~~~~~~d~~~l~~v 239 (368)
+|+++++ +++. .......+...+.+++.+++++++..+...+..+|+..+.+.+.. +.+..+.+|+.+|.+|
T Consensus 155 li~~lL~l~~~~~~~~~~~~g~i~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~v~~d~~~L~~i 234 (394)
T 2e0a_A 155 LMNQHILIFSDSQTGNPSHIGSIDPNCDVVAVVQDAFECSRMLCDQYYLSSPELKLTQVNGKFPDQPIHIVYVPSHLHHM 234 (394)
T ss_dssp HHHHHHHHHCSSCCCCTTSBTTBEEEEEHHHHHHHHHHHHHHHHHHHHSCCCCEEEEEEESSSTTSCCEEEECHHHHHHH
T ss_pred HHHHHHHHhhcccCCCCCccccccCCCCHHHHHHHHHHHHHHHHHHhcCCCCceEEEEeccCCCCCCeEEEEcHHHHHHH
Confidence 9999998 5553 112223333447899999999999999999999888777777775 4567799999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCCCEEEEEEeCCCeEEEEEeeeCCCCCCCCcccccccccccCCCCCCcccccccCCCC
Q 017673 240 VFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAADKGT 319 (368)
Q Consensus 240 l~nLl~NAi~~~~~~~~~~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~~~~~~~~~ 319 (368)
|.|||+||++|+.+++... ...++|.|.+...++.+.|.|+|+|+|||++.+++||++||+++..+..+ +...+.
T Consensus 235 l~NLl~NAik~~~~~~~~~-~~~~~I~I~~~~~~~~v~i~V~D~G~GI~~~~~~~if~~f~~~~~~~~~~----~~~~~~ 309 (394)
T 2e0a_A 235 LFELFKNAMRATVEHQENQ-PSLTPIEVIVVLGKEDLTIKISDRGGGVPLRIIDRLFSYTYSTAPTPVMD----NSRNAP 309 (394)
T ss_dssp HHHHHHHHHHHHHHHTTTS-SSCCCEEEEEEECSSEEEEEEEECSCCCCGGGHHHHTSTTCCSSCCC----------CCC
T ss_pred HHHHHHHHHHHHHhccccc-CCCCCEEEEEEeCCCEEEEEEEeCCCCcCHHHHHHHhCcCccCCCCCCcC----cCCCCC
Confidence 9999999999998842111 11247999999999999999999999999999999999999987530000 001223
Q ss_pred CCccccChHHHHHHHHHhCCeEEEEecCCCceEEEEEeCCCC-CCCCCCC
Q 017673 320 MAGYGYGLPISRLYARYFGGDLQIISMEGYGTDAYLHLSRLG-DSQEPLP 368 (368)
Q Consensus 320 ~~g~GlGL~i~k~iv~~~gG~i~v~s~~g~Gt~f~i~lP~~~-~~~e~~~ 368 (368)
..|+||||+|||.+++.|||+|++.|.+|+||+|+|.||..+ ...|++|
T Consensus 310 ~~G~GLGL~i~~~i~~~~gG~i~v~s~~g~Gt~f~i~lP~~~~~~~e~lp 359 (394)
T 2e0a_A 310 LAGFGYGLPISRLYAKYFQGDLNLYSLSGYGTDAIIYLKALSSESIEKLP 359 (394)
T ss_dssp SSCSSCHHHHHHHHHHHTTCEEEEEEETTTEEEEEEEEESSGGGCBCCCC
T ss_pred CCCcccCHHHHHHHHHHhCCEEEEEecCCccEEEEEEeCCCCCCccCCCC
Confidence 469999999999999999999999999999999999999986 5666665
No 4
>1y8o_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: a.29.5.1 d.122.1.4 PDB: 1y8n_A* 1y8p_A* 2pnr_A* 2q8i_A*
Probab=100.00 E-value=2.8e-44 Score=344.31 Aligned_cols=352 Identities=38% Similarity=0.646 Sum_probs=262.8
Q ss_pred hhhHHhhHHHHHHHHhhhcCCCCCcCHHHHHhcC-CCCChHHHHHHHHHHHHHhHHHHHHHHHHHhcCCccccCChhHHH
Q 017673 5 KLSETFSKSLIEEVGRWGCMKQTGVSLRYMMEFG-SKPTDKNLLISAQFLHKELPIRIARRAIELETLPYGLSEKPAVLK 83 (368)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~l~~rv~~r~~~l~~~~~~l~~~~~i~~ 83 (368)
-+.|.+...+...|.+|+.++..|+|+++++.|+ ..+... .++.+++++++.|++++++++..+++.+..+|.+..
T Consensus 16 ~~~~~~~~~~~~~i~~y~~~~~~~~sl~~l~~~g~~~~~~~---~s~~~l~~elPirLa~~~~~i~~~~~~~~~~~~~~~ 92 (419)
T 1y8o_A 16 NLYFQGKQPVPKQIERYSRFSPSPLSIKQFLDFGRDNACEK---TSYMFLRKELPVRLANTMREVNLLPDNLLNRPSVGL 92 (419)
T ss_dssp ----------CHHHHHHHHSCCCCCBHHHHHHHHHHTCCHH---HHHHHHHHHHHHHHHHHHHHHTTSCHHHHTSHHHHH
T ss_pred cccchhHHHHHHHHHHHhcCCCCCCCHHHHHHhcCCCCCHH---HHHHHHHHHhHHHHHHHHHHHHhCCHhhhcChhHHH
Confidence 3689999999999999999999999999999998 555553 378899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCCchhHHHHHHHHHHHHHhccCchH-----HHHHHHHHHhcccCccccccChHHHHHHHHHH
Q 017673 84 VRDWYLDSFRDLRSFPDIRSTSDERDFTQMIKAIKVRHNNVVP-----MMALGLQQLKKEMDPKIVYEDLDEIHQFLDRF 158 (368)
Q Consensus 84 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~-----~i~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~ 158 (368)
...+|.++|+++....+.. .++++...++.. +.||+|+||+ .+. +..++......+ ....+++..+++.+
T Consensus 93 e~~~l~~sf~~m~~~~~~~-~~~~~~~~~f~~-~~HeLrtPL~~vi~~~i~-g~~ell~~~~~~--~~~~~~~~~~l~~i 167 (419)
T 1y8o_A 93 VQSWYMQSFLELLEYENKS-PEDPQVLDNFLQ-VLIKVRNRHNDVVPTMAQ-GVIEYKEKFGFD--PFISTNIQYFLDRF 167 (419)
T ss_dssp HHHHHHHHHHHHHGGGGCC-TTCHHHHHHHHH-HHHHHHHHGGGHHHHHHH-HHHHHHHHHCCC--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhcC-ccchHHHHHHHH-HHHHHhcchhhhHHHHHH-HHHHHHHHhccC--cccHHHHHHHHHHH
Confidence 9999999999988754322 222223344554 5599999999 444 444444332100 11356788999998
Q ss_pred HHhhHHHHHhHHHHhhhcCCC---CCCCcccccccCCCHHHHHHHHHHHHHHHHHhhhCCCCceEEEc------CCCcee
Q 017673 159 YMSRIGIRMLIGQHVELHNPN---PPPHCIGYIDTKMSPVQVARNASEHARCVCLREYGSAPDFNIYG------DPSFTF 229 (368)
Q Consensus 159 ~~~~~~~~~li~~~l~l~~~~---~~~~~~~~~~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~~~~------~~~~~~ 229 (368)
..++...+++|++++.+++.. .....++...+.+++.++++++++.+...+...++....+.+.. +.+..+
T Consensus 168 ~~~~~~~rlli~~lL~l~~~~~~~~~~~~~~~~~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~v 247 (419)
T 1y8o_A 168 YTNRISFRMLINQHTLLFGGDTNPVHPKHIGSIDPTCNVADVVKDAYETAKMLCEQYYLVAPELEVEEFNAKAPDKPIQV 247 (419)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCSSCSSTTSBTTBEEEEEHHHHHHHHHHHHHHHHHHHHSCCCCEEEEEEETTSTTSCCEE
T ss_pred HHHHHHHHHHHHHHHHHhcccccCCCCCccccccCcCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeeecCCCCCCeEE
Confidence 888777777999998776552 12334445568999999999999999999988666555666654 556779
Q ss_pred eccchhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEEEEeCCCeEEEEEeeeCCCCCCCCcccccccccccCCCCCCc
Q 017673 230 PYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDE 309 (368)
Q Consensus 230 ~~d~~~l~~vl~nLl~NAi~~~~~~~~~~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~ 309 (368)
.+|+.+|.+||.|||+||++|+++++.......++|.|.+...++.+.|+|+|+|+|||++.+++||+|||+++..+...
T Consensus 248 ~~d~~~L~~vl~NLl~NAik~~~~~~~~~~~~~~~I~I~~~~~~~~v~I~V~D~G~GI~~e~l~~iF~~f~~~~~~~~~~ 327 (419)
T 1y8o_A 248 VYVPSHLFHMLFELFKNSMRATVELYEDRKEGYPAVKTLVTLGKEDLSIKISDLGGGVPLRKIDRLFNYMYSTAPRPSLE 327 (419)
T ss_dssp EECHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCCCEEEEEEECSSEEEEEEEECSCCCCHHHHGGGGCTTTC--------
T ss_pred EEcHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCEEEEEEeCCCEEEEEEEECCCCCCHHHHHHHhCcccccCCCCCcc
Confidence 99999999999999999999998843221111248999999999999999999999999999999999999987530000
Q ss_pred ccccccCCCCCCccccChHHHHHHHHHhCCeEEEEecCCCceEEEEEeCCCC-CCCCCCC
Q 017673 310 NTDLAADKGTMAGYGYGLPISRLYARYFGGDLQIISMEGYGTDAYLHLSRLG-DSQEPLP 368 (368)
Q Consensus 310 ~~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~i~v~s~~g~Gt~f~i~lP~~~-~~~e~~~ 368 (368)
+...+...|+||||+|||.+++.|||+|++.|.+|+||+|+|.||... ...|++|
T Consensus 328 ----~~~~~~~~G~GLGL~I~k~iv~~~gG~I~v~s~~g~Gt~f~i~LP~~~~~~~e~~p 383 (419)
T 1y8o_A 328 ----PTRAAPLAGFGYGLPISRLYARYFQGDLKLYSMEGVGTDAVIYLKALSSESFERLP 383 (419)
T ss_dssp ---------CC--CTTHHHHHHHHHHHTTCEEEEEEETTTEEEEEEEEESCGGGCBCCCC
T ss_pred ----ccCCCCcCCeecCHHHHHHHHHHhCCEEEEEecCCCCEEEEEEecCCCCCcCCCCC
Confidence 001223469999999999999999999999999999999999999986 5667665
No 5
>2btz_A Pyruvate dehydrogenase kinase isoenzyme 2; GHKL motif regulation, transferase; 2.2A {Homo sapiens} PDB: 2bu2_A* 2bu5_A* 2bu6_A* 2bu7_A* 2bu8_A* 3crk_A* 1jm6_A* 3crl_A*
Probab=100.00 E-value=5.9e-44 Score=339.74 Aligned_cols=341 Identities=39% Similarity=0.648 Sum_probs=259.2
Q ss_pred HHHHHHhhhcCCCCCcCHHHHHhcC-CCCChHHHHHHHHHHHHHhHHHHHHHHHHHhcCCccccCChhHHHHHHHHHHHH
Q 017673 14 LIEEVGRWGCMKQTGVSLRYMMEFG-SKPTDKNLLISAQFLHKELPIRIARRAIELETLPYGLSEKPAVLKVRDWYLDSF 92 (368)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~l~~rv~~r~~~l~~~~~~l~~~~~i~~~~~~~~~~~ 92 (368)
+...+.+|+.+++.++|+++|+.|+ .+..+.. ++.+++++|+.|++++++++..+++.+..++.+.++..+|..+|
T Consensus 3 ~~~~~~~~~~~~~~~~sl~~~~~fg~~~~~~~~---s~~~l~~el~~rla~~~~~l~~l~~~l~~~~~~~ev~~~~~~~~ 79 (394)
T 2btz_A 3 APKYIEHFSKFSPSPLSMKQFLDFGSSNACEKT---SFTFLRQELPVRLANIMKEINLLPDRVLSTPSVQLVQSWYVQSL 79 (394)
T ss_dssp HHHHHHHHTTSCCCCCBHHHHHHHHSSSCCHHH---HHHHHHHHHHHHHHHHHHHHTTSCHHHHHSHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhCCCCCCcCHHHHHHhcCCCCCHHH---HHHHHHHHHHHHHHHHHHHHHhCChhhhcCccHHHHHHHHHHHH
Confidence 5678899999999999999999999 5566554 78999999999999999999999999999999999999999999
Q ss_pred HHhhcCCCCCCchhHHHHHHHHHHHHHhccC-----chHHHHHHHHHHhcccCccccccChHHHHHHHHHHHHhhHHHHH
Q 017673 93 RDLRSFPDIRSTSDERDFTQMIKAIKVRHNN-----VVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDRFYMSRIGIRM 167 (368)
Q Consensus 93 ~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~l~~i~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 167 (368)
+++..........++ ..+++..+.||+|+ |++.+.+.+..+..... -....+.+..+++++...+...++
T Consensus 80 ~~l~~~~~~~~~~~~--~~~~~~~~~HeLrtpl~~vPlt~i~g~~ell~~~~~---~~~~~~~~~~~l~~~~i~~~~~rl 154 (394)
T 2btz_A 80 LDIMEFLDKDPEDHR--TLSQFTDALVTIRNRHNDVVPTMAQGVLEYKDTYGD---DPVSNQNIQYFLDRFYLSRISIRM 154 (394)
T ss_dssp HHHHTTTTCCTTSTT--TTHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccccCccchH--HHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHhhcC---CcccHHHHHHHHHHHHHhhhHHHH
Confidence 999876443222111 11245667799999 88888855544432211 012245677788875555555566
Q ss_pred hHHHHhhhcCCCC---CCCcccccccCCCHHHHHHHHHHHHHHHHHhhhCCCCceEEEc------CCCceeeccchhHHH
Q 017673 168 LIGQHVELHNPNP---PPHCIGYIDTKMSPVQVARNASEHARCVCLREYGSAPDFNIYG------DPSFTFPYVPSHLHL 238 (368)
Q Consensus 168 li~~~l~l~~~~~---~~~~~~~~~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~~~~------~~~~~~~~d~~~l~~ 238 (368)
+|++++++++... ....++...+.+++.+++++++..+...+...++....+.+.. +.+..+.+|+.+|.+
T Consensus 155 li~~ll~l~~~~~~~~~~~~~g~i~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~v~~d~~~L~~ 234 (394)
T 2btz_A 155 LINQHTLIFDGSTNPAHPKHIGSIDPNCNVSEVVKDAYDMAKLLCDKYYMASPDLEIQEINAANSKQPIHMVYVPSHLYH 234 (394)
T ss_dssp HHHHHHHHCC--------CCBTTBEEEEEHHHHHHHHHHHHHHHHHHHHSCCCCEEEEEEETTSTTSCCEEEECHHHHHH
T ss_pred HHHHHHHHhcccccCCCCcccceecCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEEEeccCCCCCCeEEEecHHHHHH
Confidence 9999999998822 1223333347899999999999999999988655445565554 456779999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCCCEEEEEEeCCCeEEEEEeeeCCCCCCCCcccccccccccCCCCCCcccccccCCC
Q 017673 239 MVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAADKG 318 (368)
Q Consensus 239 vl~nLl~NAi~~~~~~~~~~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~~~~~~~~ 318 (368)
||.|||+||++|+++++... ...++|.|.+...++.+.|.|+|+|+|||++.+++||++||+++..+... ....
T Consensus 235 il~NLl~NAik~~~~~~~~~-~~~~~I~I~~~~~~~~v~i~V~D~G~GI~~~~~~~iF~~f~~~~~~~~~~-----~~~~ 308 (394)
T 2btz_A 235 MLFELFKNAMRATVESHESS-LILPPIKVMVALGEEDLSIKMSDRGGGVPLRKIERLFSYMYSTAPTPQPG-----TGGT 308 (394)
T ss_dssp HHHHHHHHHHHHHHHTTTTC-SCCCCEEEEEEECSSEEEEEEEECSCCCCHHHHHHHTCTTTTCCC--------------
T ss_pred HHHHHHHHHHHHhhhccccC-CCCCCEEEEEEeCCCEEEEEEEeCCCCCCHHHHHHHhcccccCCCCCCcc-----cCCC
Confidence 99999999999998832100 11247999999999999999999999999999999999999987530000 0012
Q ss_pred CCCccccChHHHHHHHHHhCCeEEEEecCCCceEEEEEeCCCC-CCCCCCC
Q 017673 319 TMAGYGYGLPISRLYARYFGGDLQIISMEGYGTDAYLHLSRLG-DSQEPLP 368 (368)
Q Consensus 319 ~~~g~GlGL~i~k~iv~~~gG~i~v~s~~g~Gt~f~i~lP~~~-~~~e~~~ 368 (368)
...|+||||+|||.+++.|||+|++.|.+|+||+|+|.||..+ ...|++|
T Consensus 309 ~~~G~GLGL~i~~~i~~~~gG~i~v~s~~g~Gt~f~i~lP~~~~~~~e~~p 359 (394)
T 2btz_A 309 PLAGFGYGLPISRLYAKYFQGDLQLFSMEGFGTDAVIYLKALSTDSVERLP 359 (394)
T ss_dssp -----CCHHHHHHHHHHHTTCEEEEEEETTTEEEEEEEEESSTTTCBCCCC
T ss_pred CCCCccCCHHHHHHHHHHhCCEEEEEecCCCceEEEEEecCCCCCCCCCCC
Confidence 2469999999999999999999999999999999999999986 5566665
No 6
>2c2a_A Sensor histidine kinase; phosphotransfer, PHOQ, selenomethionyl MAD, two-component systems, transferase; HET: ADP; 1.9A {Thermotoga maritima} SCOP: a.30.2.1 d.122.1.3 PDB: 3dge_A*
Probab=100.00 E-value=1.1e-35 Score=266.47 Aligned_cols=228 Identities=15% Similarity=0.239 Sum_probs=181.6
Q ss_pred HHHHHHHHHHhccCchHHHHHHHHHHhcccCccccccChHHHHHHHHHHHHhhHHHHHhHHHHhhhcCCCCCCCcccccc
Q 017673 110 FTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIGQHVELHNPNPPPHCIGYID 189 (368)
Q Consensus 110 ~~~~l~~~~~~~~~~l~~i~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~li~~~l~l~~~~~~~~~~~~~~ 189 (368)
..+++..++||+|+||+.|.+.+..+..... ....+...++++.+.....++..++++++++++. .........
T Consensus 20 ~~~~~~~isHelrtPL~~i~~~~~~l~~~~~----~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~--~~~~~~~~~ 93 (258)
T 2c2a_A 20 KTEFIANISHELRTPLTAIKAYAETIYNSLG----ELDLSTLKEFLEVIIDQSNHLENLLNELLDFSRL--ERKSLQINR 93 (258)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHHHHTGG----GCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHTCCCCCC
T ss_pred HHHHHHHhhhhhcCCHHHHHHHHHHHHhhcc----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hCCCccCcc
Confidence 3569999999999999999977776654432 1123455677888888888899999999999886 333344445
Q ss_pred cCCCHHHHHHHHHHHHHHHHHhhhCCCCceEEEcC--CCceeeccchhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEE
Q 017673 190 TKMSPVQVARNASEHARCVCLREYGSAPDFNIYGD--PSFTFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRI 267 (368)
Q Consensus 190 ~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~~d~~~l~~vl~nLl~NAi~~~~~~~~~~~~~~~~I~i 267 (368)
+.+++.+++++++..+...+..+ .+.+.+..+ .+..+.+|+..|.+|+.|||.||++|++... ..+.|.|
T Consensus 94 ~~~~l~~~~~~~~~~~~~~~~~~---~i~~~~~~~~~~~~~~~~d~~~l~~il~NLl~NAik~~~~~~-----~~~~i~i 165 (258)
T 2c2a_A 94 EKVDLCDLVESAVNAIKEFASSH---NVNVLFESNVPCPVEAYIDPTRIRQVLLNLLNNGVKYSKKDA-----PDKYVKV 165 (258)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHHT---TCEEEEEESSCSCCEEEECHHHHHHHHHHHHHHHHHTCCTTC-----TTCEEEE
T ss_pred ceecHHHHHHHHHHHHHHHHHHc---CcEEEeecCCCCCceEEeCHHHHHHHHHHHHHHHHhcCcCCC-----CceeEEE
Confidence 68999999999999998887776 666666543 3456889999999999999999999986511 1245888
Q ss_pred EEEeCCCeEEEEEeeeCCCCCCCCcccccccccccCCCCCCcccccccCCCCCCccccChHHHHHHHHHhCCeEEEEecC
Q 017673 268 IVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAADKGTMAGYGYGLPISRLYARYFGGDLQIISME 347 (368)
Q Consensus 268 ~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~i~v~s~~ 347 (368)
.+...++.+.|.|+|+|+|||++.++++|+|||+++.. ......|+||||+|||.+++.|||+|++.|.+
T Consensus 166 ~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~----------~~~~~~G~GLGL~i~~~iv~~~gG~i~v~s~~ 235 (258)
T 2c2a_A 166 ILDEKDGGVLIIVEDNGIGIPDHAKDRIFEQFYRVDSS----------LTYEVPGTGLGLAITKEIVELHGGRIWVESEV 235 (258)
T ss_dssp EEEEETTEEEEEEEECSSCCCGGGTTGGGSTTCCCC-------------------CCCTHHHHHHHHHHTTCEEEEEEET
T ss_pred EEecCCCeEEEEEEecCCCCCHHHHHhhccccccCCCC----------CCCCCCCcchHHHHHHHHHHHcCCEEEEEecC
Confidence 88888899999999999999999999999999998754 22234699999999999999999999999999
Q ss_pred CCceEEEEEeCCCC
Q 017673 348 GYGTDAYLHLSRLG 361 (368)
Q Consensus 348 g~Gt~f~i~lP~~~ 361 (368)
|.||+|+|.||...
T Consensus 236 ~~Gt~f~i~lP~~~ 249 (258)
T 2c2a_A 236 GKGSRFFVWIPKDR 249 (258)
T ss_dssp TTEEEEEEEEECCC
T ss_pred CCCcEEEEEeeCCC
Confidence 99999999999864
No 7
>4ew8_A Sensor protein DIVL; signal transduction, two-component regulatory system, hiska GHKL domain, structural genomics; 2.50A {Caulobacter crescentus}
Probab=100.00 E-value=1.2e-32 Score=248.00 Aligned_cols=220 Identities=15% Similarity=0.161 Sum_probs=188.0
Q ss_pred HHHHHHHHHHhccCchHHHHHHHHHHhcccCccccccChHHHHHHHHHHHHhhHHHHHhHHHHhhhcCCCCCCCcccccc
Q 017673 110 FTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIGQHVELHNPNPPPHCIGYID 189 (368)
Q Consensus 110 ~~~~l~~~~~~~~~~l~~i~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~li~~~l~l~~~~~~~~~~~~~~ 189 (368)
..+++..++|++++||+.+.+.+..+..... ..+....+++.+......+..++++++++++. ..+......
T Consensus 40 ~~~~~~~l~Helr~pL~~i~~~~~~l~~~~~------~~~~~~~~l~~i~~~~~~l~~~i~~l~~~~~~--~~~~~~~~~ 111 (268)
T 4ew8_A 40 KRDFVGNVSYELRTPLTTIIGYSELLERADG------ISERGRNHVAAVRAAATQLARSIDDVLDMAQI--DAGEMALEI 111 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTCSS------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HTTCCCCCC
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhhccC------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hcCCcceee
Confidence 3568999999999999999977776654332 34567788888888888889999999999886 333344445
Q ss_pred cCCCHHHHHHHHHHHHHHHHHhhhCCCCceEEEcCCCc-eeeccchhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEE
Q 017673 190 TKMSPVQVARNASEHARCVCLREYGSAPDFNIYGDPSF-TFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRII 268 (368)
Q Consensus 190 ~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~d~~~l~~vl~nLl~NAi~~~~~~~~~~~~~~~~I~i~ 268 (368)
..+++.+++.+++..+...+..+ .+.+.+..+... .+.+|+..|.+|+.|||.||++|+.. ++.|.|.
T Consensus 112 ~~~~l~~~l~~~~~~~~~~~~~~---~i~i~~~~~~~~~~v~~d~~~l~~il~nLl~NA~~~~~~--------~~~I~i~ 180 (268)
T 4ew8_A 112 EDIRVSDLLLNAQERALKDAQLG---GVTLAVECEEDVGLIRGDGKRLAQTLDHLVENALRQTPP--------GGRVTLS 180 (268)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHHT---TCEEEEECCTTSCEEEECHHHHHHHHHHHHHHHHHHSCT--------TCEEEEE
T ss_pred eeccHHHHHHHHHHHHHhhhhcc---CceEEEEcCCCCceEecCHHHHHHHHHHHHHHHHHhCCC--------CCEEEEE
Confidence 68999999999999998877776 778888877665 58899999999999999999999866 5899999
Q ss_pred EEeCCCeEEEEEeeeCCCCCCCCcccccccccccCCCCCCcccccccCCCCCCccccChHHHHHHHHHhCCeEEEEecCC
Q 017673 269 VADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAADKGTMAGYGYGLPISRLYARYFGGDLQIISMEG 348 (368)
Q Consensus 269 ~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~i~v~s~~g 348 (368)
+...++.+.|.|+|+|+||+++.++++|++||+++.. |+|+||++|+.+++.|||+|++.+.+|
T Consensus 181 ~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~~~~~~~~----------------g~GlGL~i~~~~~~~~gG~i~i~s~~~ 244 (268)
T 4ew8_A 181 ARRALGEVRLDVSDTGRGVPFHVQAHIFDRFVGRDRG----------------GPGLGLALVKALVELHGGWVALESEPG 244 (268)
T ss_dssp EEECSSEEEEEEEESSCCCCHHHHTTTTSTTCCCSSC----------------CCTTHHHHHHHHHHHTTCEEEEEECTT
T ss_pred EEecCCEEEEEEEcCCCCCCHHHHHHHHHHHhcCCCC----------------CCcccHHHHHHHHHHcCCEEEEEecCC
Confidence 9999999999999999999999999999999987755 999999999999999999999999999
Q ss_pred CceEEEEEeCCCCCCC
Q 017673 349 YGTDAYLHLSRLGDSQ 364 (368)
Q Consensus 349 ~Gt~f~i~lP~~~~~~ 364 (368)
.||+|+|.||......
T Consensus 245 ~Gt~~~i~lP~~~~~~ 260 (268)
T 4ew8_A 245 NGSTFTCHLPETQQPG 260 (268)
T ss_dssp SCEEEEEEEECCC---
T ss_pred CCEEEEEEecCCCCCC
Confidence 9999999999875443
No 8
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima}
Probab=99.98 E-value=6.6e-32 Score=252.08 Aligned_cols=220 Identities=18% Similarity=0.241 Sum_probs=177.9
Q ss_pred chhHHHHHHHHHHHHHhccCchHHHHHHHHHHhcccCccccccChHHHHHHHHHHHHhhHHHHHhHHHHhhhcCCCCCCC
Q 017673 104 TSDERDFTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIGQHVELHNPNPPPH 183 (368)
Q Consensus 104 ~~~~~~~~~~l~~~~~~~~~~l~~i~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~li~~~l~l~~~~~~~~ 183 (368)
.++...+.++++.++|++++||+.+.+.+..+..... ..+...++++.+.....++..++++++++++.. .
T Consensus 126 ~~~~~~~~~~~~~i~Helr~pL~~i~~~~~~l~~~~~------~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~--~- 196 (349)
T 3a0r_A 126 RERLSILGEMTARVAHEIRNPITIIGGFIMRMKKHLD------DPETLKKYINIITNELSRLETIVKEILEYSKER--Q- 196 (349)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCS------CSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHCC----
T ss_pred HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhcc------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc--c-
Confidence 3334556789999999999999999977776665443 123345666666677777888999999999852 1
Q ss_pred cccccccCCCHHHHHHHHHHHHHHHHHhhhCCCCceEEEcCC-CceeeccchhHHHHHHHHHHHHHHHHHHhhcCCCCCC
Q 017673 184 CIGYIDTKMSPVQVARNASEHARCVCLREYGSAPDFNIYGDP-SFTFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVA 262 (368)
Q Consensus 184 ~~~~~~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~d~~~l~~vl~nLl~NAi~~~~~~~~~~~~~~ 262 (368)
......+++.+++++++..+...+..+ .+.+.+..+. ...+.+|+..|.+|+.||+.||++|+++ +
T Consensus 197 --~~~~~~~~l~~~~~~~~~~~~~~~~~~---~i~~~~~~~~~~~~~~~d~~~l~~vl~nLl~NA~k~~~~--------~ 263 (349)
T 3a0r_A 197 --VLEFTEFNLNELIREVYVLFEEKIRKM---NIDFCFETDNEDLRVEADRTRIKQVLINLVQNAIEATGE--------N 263 (349)
T ss_dssp --CEEEEEEEHHHHHHHHHHHHHHHHTTT---TCCCEEEESCSCCEEEECHHHHHHHHHHHHTHHHHTTCT--------T
T ss_pred --ccCCcccCHHHHHHHHHHHHHHHHHHc---CcEEEEecCCCCceEEeCHHHHHHHHHHHHHHHHHhccC--------C
Confidence 123467999999999999988777665 6777777654 4568999999999999999999999865 5
Q ss_pred CCEEEEEEeCCCeEEEEEeeeCCCCCCCCcccccccccccCCCCCCcccccccCCCCCCccccChHHHHHHHH-HhCCeE
Q 017673 263 PPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAADKGTMAGYGYGLPISRLYAR-YFGGDL 341 (368)
Q Consensus 263 ~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~~~~~~~~~~~g~GlGL~i~k~iv~-~~gG~i 341 (368)
+.|.|++...++.+.|.|+|+|+|||++.++++|+|||+++.. |+||||++|+.+++ .|||.+
T Consensus 264 ~~i~i~~~~~~~~~~i~v~D~G~Gi~~~~~~~if~~f~~~~~~----------------g~GlGL~i~~~~v~~~~gg~i 327 (349)
T 3a0r_A 264 GKIKITSEDMYTKVRVSVWNSGPPIPEELKEKIFSPFFTTKTQ----------------GTGLGLSICRKIIEDEHGGKI 327 (349)
T ss_dssp CCEEEEEEEETTEEEEEEEEESCCCCGGGGTTTSSSCCCC----------------------CCCTHHHHHHHHTTCSBC
T ss_pred CEEEEEEEecCCEEEEEEEECCCCCChHHHhhcCCCCccCCCC----------------CccchHHHHHHHHHHhCCCEE
Confidence 8999999999999999999999999999999999999998755 99999999999998 899999
Q ss_pred EEEecCCCceEEEEEeCCCCC
Q 017673 342 QIISMEGYGTDAYLHLSRLGD 362 (368)
Q Consensus 342 ~v~s~~g~Gt~f~i~lP~~~~ 362 (368)
++++.++ ||+|+|.||....
T Consensus 328 ~~~~~~~-Gt~f~i~lP~~~~ 347 (349)
T 3a0r_A 328 WTENREN-GVVFIFEIPKTPE 347 (349)
T ss_dssp CEEECSS-EEEEEEEEESCTT
T ss_pred EEEeCCC-cEEEEEEecCCCC
Confidence 9999865 9999999998653
No 9
>3jz3_A Sensor protein QSEC; helix-turn-helix, kinase domain, ATP-binding, cell inner MEM cell membrane, kinase, membrane, nucleotide-binding; 2.50A {Escherichia coli}
Probab=99.98 E-value=6.8e-33 Score=242.22 Aligned_cols=215 Identities=15% Similarity=0.132 Sum_probs=125.8
Q ss_pred HHHHHHHHhccCchHHHHHHHHHHhcccCccccccChHHHHHHHHHHHHhhHHHHHhHHHHhhhcCCCCCCCcccccccC
Q 017673 112 QMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIGQHVELHNPNPPPHCIGYIDTK 191 (368)
Q Consensus 112 ~~l~~~~~~~~~~l~~i~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~li~~~l~l~~~~~~~~~~~~~~~~ 191 (368)
++++.++||+++||+.|.+.+..+..... ..+....+++.+.....++..++++++++++. .........+.
T Consensus 4 ~~~~~~~Helr~pL~~i~~~~~~l~~~~~------~~~~~~~~l~~i~~~~~~l~~~i~~l~~~~~~--~~~~~~~~~~~ 75 (222)
T 3jz3_A 4 RFTSDAAHELRSPLTALKVQTEVAQLSDD------DPQARKKALLQLHSGIDRATRLVDQLLTLSRL--DSLDNLQDVAE 75 (222)
T ss_dssp ------------------------------------------CEECCC-CHHHHHHHHHHHHHHHTC--CCSTTSTTCEE
T ss_pred HHHHHHhHHhcCcHHHHHHHHHHHhhccC------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hccCCccCccc
Confidence 48899999999999999866654443222 12233344444444555677789999999997 44444455678
Q ss_pred CCHHHHHHHHHHHHHHHHHhhhCCCCceEEEcCCC-ceeeccchhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEEEE
Q 017673 192 MSPVQVARNASEHARCVCLREYGSAPDFNIYGDPS-FTFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVA 270 (368)
Q Consensus 192 ~~l~~li~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~d~~~l~~vl~nLl~NAi~~~~~~~~~~~~~~~~I~i~~~ 270 (368)
+++.+++++++..+...+..+ .+.+.+..+.. ..+.+|+..|.+|+.||+.||++|++. ++.|.|.+.
T Consensus 76 ~~l~~~~~~~~~~~~~~~~~~---~i~~~~~~~~~~~~~~~d~~~l~~il~nLl~NAi~~~~~--------~~~i~i~~~ 144 (222)
T 3jz3_A 76 IPLEDLLQSSVMDIYHTAQQA---KIDVRLTLNAHSIKRTGQPLLLSLLVRNLLDNAVRYSPQ--------GSVVDVTLN 144 (222)
T ss_dssp EEHHHHHHHHHHHHHHHHHHT---TCEEEEEESSCSCEEEECHHHHHHHHHHHHHHHHHTCCT--------TCEEEEEEC
T ss_pred CCHHHHHHHHHHHHHHHHHHh---CCeEEEeeCCcceEEecCHHHHHHHHHHHHHHHHHcCCC--------CCeEEEEEc
Confidence 999999999999998888776 77777776554 568899999999999999999999866 567888775
Q ss_pred eCCCeEEEEEeeeCCCCCCCCcccccccccccCCCCCCcccccccCCCCCCccccChHHHHHHHHHhCCeEEEEecCCCc
Q 017673 271 DGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAADKGTMAGYGYGLPISRLYARYFGGDLQIISMEGYG 350 (368)
Q Consensus 271 ~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~i~v~s~~g~G 350 (368)
..+ |.|.|+|+|||++.++++|++||+++.. ...|+|+||++|+.+++.|||+|++.|.+|+|
T Consensus 145 ~~~----i~V~D~G~Gi~~~~~~~if~~f~~~~~~-------------~~~g~GlGL~i~~~i~~~~gG~i~i~s~~~~G 207 (222)
T 3jz3_A 145 ADN----FIVRDNGPGVTPEALARIGERFYRPPGQ-------------TATGSGLGLSIVQRIAKLHGMNVEFGNAEQGG 207 (222)
T ss_dssp SSE----EEEECSCC---------------------------------------CTHHHHHHHHHHTTCEEECCBCTTSS
T ss_pred cCe----EEEEECCCCCCHHHHHHHHhhhccCCCC-------------CCCcccccHHHHHHHHHHcCCEEEEEcCCCCc
Confidence 543 8999999999999999999999986532 13599999999999999999999999999999
Q ss_pred eEEEEEeCCCCC
Q 017673 351 TDAYLHLSRLGD 362 (368)
Q Consensus 351 t~f~i~lP~~~~ 362 (368)
|+|+++||....
T Consensus 208 t~v~~~~P~~~~ 219 (222)
T 3jz3_A 208 FEAKVSWLEHHH 219 (222)
T ss_dssp BEEEEECCCC--
T ss_pred EEEEEeecCCCC
Confidence 999999998754
No 10
>3d36_A Sporulation kinase B; GHKL ATPase, four helix bundle, class I two-component histidine kinase, phosphoprotein; HET: ADP; 2.03A {Geobacillus stearothermophilus}
Probab=99.97 E-value=7.2e-32 Score=239.15 Aligned_cols=218 Identities=16% Similarity=0.179 Sum_probs=180.0
Q ss_pred hHHHHHHHHHHHHHhccCchHHHHHHHHHHhcccCccccccChHHHHHHHHHHHHhhHHHHHhHHHHhhhcCCCCCCCcc
Q 017673 106 DERDFTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIGQHVELHNPNPPPHCI 185 (368)
Q Consensus 106 ~~~~~~~~l~~~~~~~~~~l~~i~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~li~~~l~l~~~~~~~~~~ 185 (368)
+.+....++..++||+++||+.|.+.+..+..... ..+...++++.+.....++..++++++.+++.. ..
T Consensus 10 ~~~~~~~~~~~l~Helr~pL~~i~~~~~~l~~~~~------~~~~~~~~~~~i~~~~~~l~~~i~~l~~~~~~~--~~-- 79 (244)
T 3d36_A 10 KMEAVTHLAASISHEIRNPLTAARGFIQLIEEQPL------AADKRRQYARIAIEELDRAEAIITDYLTFAKPA--PE-- 79 (244)
T ss_dssp -------CCCCHHHHHHHHHHHHHHHHHHGGGCTT------CHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSS--CC--
T ss_pred HHHHHHHHHHHhhHHhccHHHHHHHHHHHHHhccc------ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--cC--
Confidence 33445668889999999999999977776654433 356677888888888888899999999998873 22
Q ss_pred cccccCCCHHHHHHHHHHHHHHHHHhhhCCCCceEEEcCCCceeeccchhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCE
Q 017673 186 GYIDTKMSPVQVARNASEHARCVCLREYGSAPDFNIYGDPSFTFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPI 265 (368)
Q Consensus 186 ~~~~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~d~~~l~~vl~nLl~NAi~~~~~~~~~~~~~~~~I 265 (368)
....+++..++++++..+...+..+ .+.+.+..++ ..+.+|+..|.+++.||+.||++|++. ++.|
T Consensus 80 --~~~~~~l~~~l~~~~~~~~~~~~~~---~i~~~~~~~~-~~~~~d~~~l~~il~nLl~NA~~~~~~--------~~~i 145 (244)
T 3d36_A 80 --TPEKLNVKLEIERVIDILRPLANMS---CVDIQATLAP-FSVIGEREKFRQCLLNVMKNAIEAMPN--------GGTL 145 (244)
T ss_dssp --CCEEEEHHHHHHHHHHHHHHHHTTT---TEEEEEECCC-CEEEECHHHHHHHHHHHHHHHHHTCTT--------CEEE
T ss_pred --CcchhhHHHHHHHHHHHHHHHHHhc---CeEEeccCCC-ceEEeCHHHHHHHHHHHHHHHHHhccC--------CCeE
Confidence 2357899999999999988776655 5566665443 668899999999999999999999865 5889
Q ss_pred EEEEEeCCCeEEEEEeeeCCCCCCCCcccccccccccCCCCCCcccccccCCCCCCccccChHHHHHHHHHhCCeEEEEe
Q 017673 266 RIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAADKGTMAGYGYGLPISRLYARYFGGDLQIIS 345 (368)
Q Consensus 266 ~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~i~v~s 345 (368)
.|.+...++.+.|.|+|+|+||+++..+++|++||+++.. .|.|+||++|+.+++.|||+|++.+
T Consensus 146 ~i~~~~~~~~~~i~i~D~G~gi~~~~~~~if~~~~~~~~~---------------~g~GlGL~i~~~i~~~~gG~i~~~~ 210 (244)
T 3d36_A 146 QVYVSIDNGRVLIRIADTGVGMTKEQLERLGEPYFTTKGV---------------KGTGLGMMVVYRIIESMNGTIRIES 210 (244)
T ss_dssp EEEEEEETTEEEEEEEECSSCCCHHHHHHTTSTTCCSSGG---------------GCCSCHHHHHHHHHHHTTCEEEEEE
T ss_pred EEEEEEeCCEEEEEEEecCCCCCHHHHHHHhcccccCCCC---------------CCcchhHHHHHHHHHHcCCEEEEEe
Confidence 9999999999999999999999999999999999987743 5999999999999999999999999
Q ss_pred cCCCceEEEEEeCCCCC
Q 017673 346 MEGYGTDAYLHLSRLGD 362 (368)
Q Consensus 346 ~~g~Gt~f~i~lP~~~~ 362 (368)
.++.||+|+|.||....
T Consensus 211 ~~~~G~~~~i~lP~~~~ 227 (244)
T 3d36_A 211 EIHKGTTVSIYLPLASS 227 (244)
T ss_dssp ETTTEEEEEEEEECCC-
T ss_pred cCCCcEEEEEEecCCCC
Confidence 99999999999998743
No 11
>4fpp_A Phosphotransferase; four helix bundle, bergerat fold, CCKA, CTRA, CPDR, bacterial cytoplasme; 2.20A {Caulobacter crescentus} PDB: 4fmt_A
Probab=99.96 E-value=1.2e-29 Score=225.93 Aligned_cols=197 Identities=10% Similarity=0.043 Sum_probs=143.1
Q ss_pred HHHHHHHhccCchHHHHHHHHHHhcccCccccccChHHHHHHHHHHHHhhHHHHHhHHHHhhhcCCCCCCCcccccccCC
Q 017673 113 MIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIGQHVELHNPNPPPHCIGYIDTKM 192 (368)
Q Consensus 113 ~l~~~~~~~~~~l~~i~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~li~~~l~l~~~~~~~~~~~~~~~~~ 192 (368)
+.+.++||+||||+.|.+.+..+..... .+...++++.+.....++..+++.+ .++..... ....+
T Consensus 49 las~IaHELrtPL~~I~~~~elL~~~~~-------~~~~~~~l~~I~~~~~~~~~ll~~~-r~~~~~~~------~~~~~ 114 (247)
T 4fpp_A 49 LAARLCHDFISPASAIVSGLDLLEDPSA-------QDMRDDAMNLIASSARKLADLLQFT-RVAFGASA------SAENF 114 (247)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCTTC-------GGGHHHHHHHHHHHHHHHHHHHHHH-HHHTTCCS------SCCCE
T ss_pred HHhccCHHHhHHHHHHHHHHHHHhccCC-------chHHHHHHHHHHHHHHHHHHHHHHH-HHhhcccc------ccccc
Confidence 6678999999999999977777765544 3344556666655555555555433 22222111 12356
Q ss_pred CHHHHHHHHHHHHHHHHHhhhCCCCceEEEcCCCceeeccchhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEEEEeC
Q 017673 193 SPVQVARNASEHARCVCLREYGSAPDFNIYGDPSFTFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADG 272 (368)
Q Consensus 193 ~l~~li~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~d~~~l~~vl~nLl~NAi~~~~~~~~~~~~~~~~I~i~~~~~ 272 (368)
++.++.. .+...+..+ .+.+.+..+.. .++..+.|++.||+.||++|++. ++.|.|.+...
T Consensus 115 ~~~~l~~----~~~~~~~~~---~i~l~~~~~~~----~~~~~~~qvl~NLl~NA~~a~~~--------gg~I~v~~~~~ 175 (247)
T 4fpp_A 115 DSRELEK----LAQGVFAHV---RPTLDWQIEPQ----AMNKPSSRAVLNIAQIAASALPA--------GGVATVKGVAA 175 (247)
T ss_dssp EHHHHHH----HHHHHHTTS---SSEEEECCCSC----EECHHHHHHHHHHHHHHHTTCTT--------CCEEEEEEEEE
T ss_pred cHHHHHH----HHHHHHHhh---hhhccccccch----hhhHHHHHHHHHHHHHHHHhcCC--------CCeEEEEEEEE
Confidence 6655432 333333333 45555443332 23667899999999999999987 68999999999
Q ss_pred CCeEEEEEeeeCCC--CCCCCcccccccccccCCCCCCcccccccCCCCCCccccChHHHHHHHHHhCCeEEEEecCCCc
Q 017673 273 LEDVTIKVSDEGGG--IPRSGLPKIFTYLYSTARNPLDENTDLAADKGTMAGYGYGLPISRLYARYFGGDLQIISMEGYG 350 (368)
Q Consensus 273 ~~~~~i~V~D~G~G--i~~~~~~~if~~f~~~~~~~~~~~~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~i~v~s~~g~G 350 (368)
++.+.|.|+|+|+| ||++..+++|++|++++. .|+||||+|||.|++.|||+|+++|.+| |
T Consensus 176 ~~~~~i~V~D~G~Gi~i~~~~~~~~f~~~~~~~~----------------~G~GLGLai~~~iv~~hGG~i~v~s~~~-G 238 (247)
T 4fpp_A 176 DGRFSIIADAKGPRARLRPEVLAGLKGEPLAEGL----------------GGPWVQAAYLNALVRAAGGQIAVEIGED-R 238 (247)
T ss_dssp TTEEEEEEEEESTTCCCCHHHHHHHTTCCCCSSC----------------HHHHHHHHHHHHHHHHTTCEEEEEEETT-E
T ss_pred CCEEEEEEEEcCCCCCCCHHHHHHhcCCCCCCCC----------------CCccHHHHHHHHHHHHcCCEEEEEEcCC-E
Confidence 99999999999988 556677777887776654 4999999999999999999999999876 9
Q ss_pred eEEEEEeCC
Q 017673 351 TDAYLHLSR 359 (368)
Q Consensus 351 t~f~i~lP~ 359 (368)
++|+|+||.
T Consensus 239 ~~f~v~LPA 247 (247)
T 4fpp_A 239 ASIAAWVPA 247 (247)
T ss_dssp EEEEEEEEC
T ss_pred EEEEEEecC
Confidence 999999994
No 12
>1id0_A PHOQ histidine kinase; PHOQ/PHOP, signal transduction, transferase; HET: ANP; 1.60A {Escherichia coli} SCOP: d.122.1.3 PDB: 3cgz_A 3cgy_A
Probab=99.95 E-value=2e-27 Score=195.18 Aligned_cols=147 Identities=18% Similarity=0.168 Sum_probs=131.6
Q ss_pred cCCCHHHHHHHHHHHHHHHHHhhhCCCCceEEEcCCCceeeccchhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEEE
Q 017673 190 TKMSPVQVARNASEHARCVCLREYGSAPDFNIYGDPSFTFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIV 269 (368)
Q Consensus 190 ~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~d~~~l~~vl~nLl~NAi~~~~~~~~~~~~~~~~I~i~~ 269 (368)
+++++.+++++++..+...+..+ .+.+.++.+.+..+.+|+..|.+++.||+.||++|+. +.|.|.+
T Consensus 2 e~~~l~~~l~~~~~~~~~~~~~~---~i~~~~~~~~~~~~~~d~~~l~~il~nLl~NAi~~~~----------~~i~i~~ 68 (152)
T 1id0_A 2 ELHPVAPLLDNLTSALNKVYQRK---GVNISLDISPEISFVGEQNDFVEVMGNVLDNACKYCL----------EFVEISA 68 (152)
T ss_dssp CEEEHHHHHHHHHHHHHHHTTTT---TCEEEEECCTTCEEESCHHHHHHHHHHHHHHHHHHCS----------SEEEEEE
T ss_pred CcccHHHHHHHHHHHHHHHHHhC---CcEEEEEcCCCceEeeCHHHHHHHHHHHHHHHHHhCc----------CeEEEEE
Confidence 46889999999999998877766 7788888777778999999999999999999999972 4788999
Q ss_pred EeCCCeEEEEEeeeCCCCCCCCcccccccccccCCCCCCcccccccCCCCCCccccChHHHHHHHHHhCCeEEEEecCCC
Q 017673 270 ADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAADKGTMAGYGYGLPISRLYARYFGGDLQIISMEGY 349 (368)
Q Consensus 270 ~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~i~v~s~~g~ 349 (368)
...++.+.|.|+|+|+||+++.++++|++|++++.. ..|+|+||++|+.+++.|||++++.+.++.
T Consensus 69 ~~~~~~~~i~i~D~G~gi~~~~~~~~f~~~~~~~~~--------------~~g~GlGL~i~~~~~~~~gG~i~~~~~~~~ 134 (152)
T 1id0_A 69 RQTDEHLYIVVEDDGPGIPLSKREVIFDRGQRVDTL--------------RPGQGVGLAVAREITEQYEGKIVAGESMLG 134 (152)
T ss_dssp EECSSCEEEEEEESSSCCCGGGTTGGGSCCCCTTCC--------------CTTCCSCHHHHHHHHHHTTCEEEEEECTTS
T ss_pred EecCCEEEEEEEeCCCCcCHHHHHHHhccceeccCC--------------CCCcccCHHHHHHHHHHcCCEEEEEeCCCC
Confidence 889999999999999999999999999999998765 369999999999999999999999999988
Q ss_pred ceEEEEEeCCCCCC
Q 017673 350 GTDAYLHLSRLGDS 363 (368)
Q Consensus 350 Gt~f~i~lP~~~~~ 363 (368)
||+|++.||.....
T Consensus 135 G~~~~i~lP~~~~~ 148 (152)
T 1id0_A 135 GARMEVIFGRQHSA 148 (152)
T ss_dssp SEEEEEEECCCC--
T ss_pred cEEEEEEEeccccC
Confidence 99999999987543
No 13
>3a0y_A Sensor protein; ATP-LID, kinase, phosphoprotein, transferase, two-component regulatory system; 1.57A {Thermotoga maritima} PDB: 3a0t_A* 3a0x_A 3a0w_A 3a0z_A
Probab=99.94 E-value=1.2e-26 Score=190.41 Aligned_cols=146 Identities=22% Similarity=0.284 Sum_probs=129.5
Q ss_pred ccCCCHHHHHHHHHHHHHHHHHhhhCCCCceEEEcC-CCceeeccchhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEE
Q 017673 189 DTKMSPVQVARNASEHARCVCLREYGSAPDFNIYGD-PSFTFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRI 267 (368)
Q Consensus 189 ~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~d~~~l~~vl~nLl~NAi~~~~~~~~~~~~~~~~I~i 267 (368)
.+.+++.+++++++..+...+..+ .+.+.+..+ ....+.+|+..|.+++.||+.||++|++. ++.|.|
T Consensus 3 ~~~~~l~~~~~~~~~~~~~~~~~~---~i~~~~~~~~~~~~i~~d~~~l~~il~nll~NAi~~~~~--------~~~I~i 71 (152)
T 3a0y_A 3 FTEFNLNELIREVYVLFEEKIRKM---NIDFCFETDNEDLRVEADRTRIKQVLINLVQNAIEATGE--------NGKIKI 71 (152)
T ss_dssp CEEEEHHHHHHHHHHHHHHHHHHT---TCEEEEEESCSSCEEEECHHHHHHHHHHHHHHHHHHHCT--------TCEEEE
T ss_pred cEEecHHHHHHHHHHHHHHHHHHc---CcEEEEecCCCCcEEEECHHHHHHHHHHHHHHHHHhcCC--------CCEEEE
Confidence 357899999999999999888877 777777765 35678999999999999999999999965 589999
Q ss_pred EEEeCCCeEEEEEeeeCCCCCCCCcccccccccccCCCCCCcccccccCCCCCCccccChHHHHHHHH-HhCCeEEEEec
Q 017673 268 IVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAADKGTMAGYGYGLPISRLYAR-YFGGDLQIISM 346 (368)
Q Consensus 268 ~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~~~~~~~~~~~g~GlGL~i~k~iv~-~~gG~i~v~s~ 346 (368)
.+...++.+.|.|+|+|+|++++.++++|++|++++.. |+|+||++|+.+++ .|||.+.+.+.
T Consensus 72 ~~~~~~~~~~i~i~D~G~g~~~~~~~~~f~~~~~~~~~----------------g~GlGL~i~~~~~~~~~gg~~~~~~~ 135 (152)
T 3a0y_A 72 TSEDMYTKVRVSVWNSGPPIPEELKEKIFSPFFTTKTQ----------------GTGLGLSICRKIIEDEHGGKIWTENR 135 (152)
T ss_dssp EEEECSSEEEEEEEEESCCCCGGGTTGGGSTTCCCC------------------CCCCSHHHHHHHHHTTTSCEEEEEEE
T ss_pred EEEecCCEEEEEEEeCCCCcCHHHHHhHhhhhccCCCC----------------CCCcCHHHHHHHHHHhCCcEEEEecC
Confidence 99999999999999999999999999999999987754 99999999999999 99999999998
Q ss_pred CCCceEEEEEeCCCCC
Q 017673 347 EGYGTDAYLHLSRLGD 362 (368)
Q Consensus 347 ~g~Gt~f~i~lP~~~~ 362 (368)
++ ||+|++.||....
T Consensus 136 ~~-g~~~~i~lP~~~~ 150 (152)
T 3a0y_A 136 EN-GVVFIFEIPKTPE 150 (152)
T ss_dssp TT-EEEEEEEEESCC-
T ss_pred CC-CEEEEEEeCCCCC
Confidence 65 9999999998643
No 14
>1ysr_A Sensor-type histidine kinase PRRB; ATP-binding domain, structural genomics, mycobacterium tuberculosis structural proteomics project; 1.78A {Mycobacterium tuberculosis} SCOP: d.122.1.3 PDB: 1ys3_A
Probab=99.94 E-value=4e-27 Score=193.11 Aligned_cols=145 Identities=18% Similarity=0.282 Sum_probs=120.5
Q ss_pred ccCCCHHHHHHHHHHHHHHHHHhhhCCCCceEEEcCCCceeeccchhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEE
Q 017673 189 DTKMSPVQVARNASEHARCVCLREYGSAPDFNIYGDPSFTFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRII 268 (368)
Q Consensus 189 ~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~d~~~l~~vl~nLl~NAi~~~~~~~~~~~~~~~~I~i~ 268 (368)
.+.+++.+++++++..+.... ....+.+..+.+..+.+|+..|.+++.||+.||++|++. +.|.|.
T Consensus 5 ~~~~~l~~~~~~~~~~~~~~~-----~~~~i~~~~~~~~~~~~d~~~l~~il~nLl~NA~~~~~~---------~~I~i~ 70 (150)
T 1ysr_A 5 HVPVDITDLLDRAAHDAARIY-----PDLDVSLVPSPTCIIVGLPAGLRLAVDNAIANAVKHGGA---------TLVQLS 70 (150)
T ss_dssp CEEEEHHHHHHHHHHHHHHHS-----TTCEEEECSCCCCEEEECHHHHHHHHHHHHHHHHHTTCC---------SEEEEE
T ss_pred ccccCHHHHHHHHHHHHHHhc-----cCCceEEccCCCceEecCHHHHHHHHHHHHHHHHhcCCC---------cEEEEE
Confidence 357899999999999876543 245777777777789999999999999999999999754 589999
Q ss_pred EEeCCCeEEEEEeeeCCCCCCCCcccccccccccCCCCCCcccccccCCCCCCccccChHHHHHHHHHhCCeEEEEecCC
Q 017673 269 VADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAADKGTMAGYGYGLPISRLYARYFGGDLQIISMEG 348 (368)
Q Consensus 269 ~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~i~v~s~~g 348 (368)
+...++.+.|.|.|+|+||+++.++++|++||++... ...|+|+||++|+.+++.|||++++.+.++
T Consensus 71 ~~~~~~~~~i~v~D~G~gi~~~~~~~if~~f~~~~~~-------------~~~g~GlGL~i~~~~~~~~gG~i~~~~~~~ 137 (150)
T 1ysr_A 71 AVSSRAGVEIAIDDNGSGVPEGERQVVFERFSRGSTA-------------SHSGSGLGLALVAQQAQLHGGTASLENSPL 137 (150)
T ss_dssp EEEETTEEEEEEEESSSCCCGGGHHHHHTSCC------------------------CCCHHHHHHHHHTTCEEEEEECTT
T ss_pred EEecCCEEEEEEEECCCCCCHHHHHHHhcccccCCCC-------------CCCCCCcCHHHHHHHHHHcCCEEEEeecCC
Confidence 9988999999999999999999999999999976432 135999999999999999999999999998
Q ss_pred CceEEEEEeCCC
Q 017673 349 YGTDAYLHLSRL 360 (368)
Q Consensus 349 ~Gt~f~i~lP~~ 360 (368)
.||+|+|.||..
T Consensus 138 ~G~~~~i~lP~~ 149 (150)
T 1ysr_A 138 GGARLVLRLPGP 149 (150)
T ss_dssp SSEEEEEEEECC
T ss_pred CCEEEEEEEeCC
Confidence 899999999974
No 15
>1bxd_A ENVZ(290-450), protein (osmolarity sensor protein (ENVZ)); histidine kinase, osmosensor, His-Asp phosphorelay system, signal transduction; HET: ANP; NMR {Escherichia coli BL21} SCOP: d.122.1.3
Probab=99.94 E-value=7.4e-26 Score=187.84 Aligned_cols=145 Identities=17% Similarity=0.128 Sum_probs=125.5
Q ss_pred ccCCCHHHHHHHHHHHHHHHHHhhhCCCCceEEEc-CCCceeeccchhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEE
Q 017673 189 DTKMSPVQVARNASEHARCVCLREYGSAPDFNIYG-DPSFTFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRI 267 (368)
Q Consensus 189 ~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~~d~~~l~~vl~nLl~NAi~~~~~~~~~~~~~~~~I~i 267 (368)
.+.+++.+++++++..+.. ....+.+.. +....+.+|+..|.+++.||+.||++|+ . +.|.|
T Consensus 7 ~~~~~l~~~~~~~~~~~~~-------~~~~i~~~~~~~~~~v~~d~~~l~~il~nll~NAik~~-~---------~~I~i 69 (161)
T 1bxd_A 7 MEMADLNAVLGEVIAAESG-------YEREIETALYPGSIEVKMHPLSIKRAVANMVVNAARYG-N---------GWIKV 69 (161)
T ss_dssp SEEECHHHHHHHHHHHHCS-------SSCCEEEECCSSCCCEEECHHHHHHHHHHHHHHHHTTC-C---------SCEEE
T ss_pred ccccCHHHHHHHHHHHhhh-------hcceEEEEecCCCceEEECHHHHHHHHHHHHHHHHhhc-C---------CeEEE
Confidence 4689999999999887432 245666663 3456689999999999999999999997 3 79999
Q ss_pred EEEeCCCeEEEEEeeeCCCCCCCCcccccccccccCCCCCCcccccccCCCCCCccccChHHHHHHHHHhCCeEEEEecC
Q 017673 268 IVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAADKGTMAGYGYGLPISRLYARYFGGDLQIISME 347 (368)
Q Consensus 268 ~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~i~v~s~~ 347 (368)
.+...++.+.|.|+|+|+||+++.++++|++||+++.. +...|+|+||++|+.+++.|||++++.+.+
T Consensus 70 ~~~~~~~~~~i~i~D~G~gi~~~~~~~~f~~f~~~~~~------------~~~~g~GlGL~i~~~~~~~~gG~i~~~~~~ 137 (161)
T 1bxd_A 70 SSGTEPNRAWFQVEDDGPGIAPEQRKHLFQPFVRGDSA------------RTISGTGLGLAIVQRIVDNHNGMLELGTSE 137 (161)
T ss_dssp EEEEETTEEEEEEEEESSCSCTTGGGCSSCCCCCCSCC------------CCCCCCSCCCCTTHHHHHHHTSEEEEEEET
T ss_pred EEEEcCCEEEEEEEeCCCCCCHHHHHHhCCCceeCCCC------------CCCCCcccCHHHHHHHHHHcCCEEEEEECC
Confidence 99999999999999999999999999999999998754 223699999999999999999999999998
Q ss_pred CCceEEEEEeCCCCC
Q 017673 348 GYGTDAYLHLSRLGD 362 (368)
Q Consensus 348 g~Gt~f~i~lP~~~~ 362 (368)
+.||+|++.||....
T Consensus 138 ~~G~~~~i~lP~~~~ 152 (161)
T 1bxd_A 138 RGGLSIRAWLPVPVT 152 (161)
T ss_dssp TTEEEEEEEECCCSC
T ss_pred CCeEEEEEEEeCCcc
Confidence 899999999998744
No 16
>3sl2_A Sensor histidine kinase YYCG; ATP binding, intact ATP, bergerat fold, TR; HET: ATP; 1.61A {Bacillus subtilis}
Probab=99.93 E-value=4.3e-26 Score=192.33 Aligned_cols=149 Identities=21% Similarity=0.297 Sum_probs=123.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHhhhCCCCceEEEcCC-CceeeccchhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEEE
Q 017673 191 KMSPVQVARNASEHARCVCLREYGSAPDFNIYGDP-SFTFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIV 269 (368)
Q Consensus 191 ~~~l~~li~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~d~~~l~~vl~nLl~NAi~~~~~~~~~~~~~~~~I~i~~ 269 (368)
++++.++++.++..+... .. ..+.+.+..+. ...+.+|+..|.+++.|||.||++|+.. ++.|.|.+
T Consensus 2 ~v~l~~~l~~~~~~~~~~-~~---~~i~~~~~~~~~~~~~~~d~~~l~~il~nLl~NAi~~~~~--------~~~i~I~i 69 (177)
T 3sl2_A 2 WIQIVRFMSLIIDRFEMT-KE---QHVEFIRNLPDRDLYVEIDQDKITQVLDNIISNALKYSPE--------GGHVTFSI 69 (177)
T ss_dssp EEEHHHHHHHHHHHHHTS-SC---C--CEEEECCSSCCEEESCHHHHHHHHHHHHHHHHHTCCT--------TCCEEEEE
T ss_pred eeeHHHHHHHHHHHHHHH-Hh---cCcEEEEecCCCCcEEEeCHHHHHHHHHHHHHHHHHhCCC--------CCeEEEEE
Confidence 467889999999888765 33 36777777655 4668999999999999999999999865 47777776
Q ss_pred --EeCCCeEEEEEeeeCCCCCCCCcccccccccccCCCCCCcccccccCCCCCCccccChHHHHHHHHHhCCeEEEEecC
Q 017673 270 --ADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAADKGTMAGYGYGLPISRLYARYFGGDLQIISME 347 (368)
Q Consensus 270 --~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~i~v~s~~ 347 (368)
...++.+.|.|+|+|+||+++.++++|++||+.... ......|+|+||++|+.+++.|||++++.+.+
T Consensus 70 ~~~~~~~~~~i~V~D~G~gi~~~~~~~lf~~~~~~~~~----------~~~~~~g~GlGL~iv~~~~~~~~G~i~i~~~~ 139 (177)
T 3sl2_A 70 DVNEEEELLYISVKDEGIGIPKKDVEKVFDRFYRVDKA----------RTRKLGGTGLGLAIAKEMVQAHGGDIWADSIE 139 (177)
T ss_dssp EEETTTTEEEEEEECCSSCCCTTTTTTTTSTTCCCC----------------CCCCCCHHHHHHHHHHHTTCCEEEEEET
T ss_pred EEccCCCEEEEEEEECCCCCCHHHHHHHHhhhccCCCC----------CCCCCCCCCcCHHHHHHHHHHcCCEEEEEecC
Confidence 677889999999999999999999999999987654 23334699999999999999999999999999
Q ss_pred CCceEEEEEeCCCC
Q 017673 348 GYGTDAYLHLSRLG 361 (368)
Q Consensus 348 g~Gt~f~i~lP~~~ 361 (368)
+.||+|+|.||...
T Consensus 140 ~~Gt~~~i~lP~~~ 153 (177)
T 3sl2_A 140 GKGTTITFTLPYKE 153 (177)
T ss_dssp TTEEEEEEEEEEEC
T ss_pred CCCeEEEEEEeCCC
Confidence 99999999999764
No 17
>1b3q_A Protein (chemotaxis protein CHEA); histine kinase, signal transduction, multi-domai protein, transferase; 2.60A {Thermotoga maritima} SCOP: a.30.2.1 b.40.7.1 d.122.1.3 PDB: 2ch4_A* 3ur1_A
Probab=99.93 E-value=3.3e-26 Score=215.83 Aligned_cols=209 Identities=14% Similarity=0.148 Sum_probs=145.8
Q ss_pred HHHHHHHHHHhccCchHHHHHHHHHHhcccCccccccChHHHHHHHHHHHHhhHHHHHhHHHHhhhcCCCCCCCcccccc
Q 017673 110 FTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIGQHVELHNPNPPPHCIGYID 189 (368)
Q Consensus 110 ~~~~l~~~~~~~~~~l~~i~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~li~~~l~l~~~~~~~~~~~~~~ 189 (368)
..+++..+.|++++|++.+...... +. .+.+. .....+..+++++++++.. .
T Consensus 10 k~d~l~~~~~el~~~~~~l~~~~~~----~~-------~~~i~-------~~~~~l~~l~~~l~~~~~~----------~ 61 (379)
T 1b3q_A 10 KLDNLMDLMGELVIARSRILETLKK----YN-------IKELD-------ESLSHLSRITLDLQNVVMK----------I 61 (379)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSS----CC-------CHHHH-------HHHHHHHHHHHHHHHHHHH----------H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh----hh-------HHHHH-------HHHHHHHHHHHHHHHHHHH----------c
Confidence 4567888999999999887743222 12 12232 3333455677777776532 2
Q ss_pred cCCCHHHHHHHHHHHHHHHHHhhhCCCCceEEEcCCCceeeccch---hHHHHHHHHHHHHHHHHHH----hhcCCCCCC
Q 017673 190 TKMSPVQVARNASEHARCVCLREYGSAPDFNIYGDPSFTFPYVPS---HLHLMVFELVKNSLRAVEE----RYMDSDKVA 262 (368)
Q Consensus 190 ~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~d~~---~l~~vl~nLl~NAi~~~~~----~~~~~~~~~ 262 (368)
+.+++..++..+...++..+... +..+.+.+.++ .+..|+. .+.+++.||+.||++|+.+ +...++...
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~-~~~v~l~~~~~---~~~~d~~~~~~l~~~l~nLl~NAi~h~~e~~~~r~~~gk~~~ 137 (379)
T 1b3q_A 62 RMVPISFVFNRFPRMVRDLAKKM-NKEVNFIMRGE---DTELDRTFVEEIGEPLLHLLRNAIDHGIEPKEERIAKGKPPI 137 (379)
T ss_dssp HEEETHHHHTTHHHHHHHHHHHT-TCCEEEEEECT---TCEEEHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHTTCCSS
T ss_pred ceecHHHHHHHHHHHHHHHHHHh-CCeEEEEEcCC---CeeecHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhcCCCCC
Confidence 35567788888888888877765 33344444433 2345664 5556699999999999721 111111225
Q ss_pred CCEEEEEEeCCCeEEEEEeeeCCCCCCCCc------------------------ccccccccccCCCCCCcccccccCCC
Q 017673 263 PPIRIIVADGLEDVTIKVSDEGGGIPRSGL------------------------PKIFTYLYSTARNPLDENTDLAADKG 318 (368)
Q Consensus 263 ~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~------------------------~~if~~f~~~~~~~~~~~~~~~~~~~ 318 (368)
+.|.|++...++++.|+|+|+|+||+++.+ +++|+|||+++.. ..
T Consensus 138 g~I~i~~~~~~~~v~i~V~D~G~Gi~~~~~~~~a~~~gl~~~~~~~~~~~~~~~~~iF~p~fst~~~-----------~~ 206 (379)
T 1b3q_A 138 GTLILSARHEGNNVVIEVEDDGRGIDKEKIIRKAIEKGLIDESKAATLSDQEILNFLFVPGFSTKEK-----------VS 206 (379)
T ss_dssp EEEEEEEEEETTEEEEEEEECSCCCCHHHHHHHHHHSSSCCSTTTTTSCTHHHHSGGGSTTCC-----------------
T ss_pred cEEEEEEEEeCCEEEEEEEECCCCCCHHHHHHHHHHcCCCChhhhhcCCHHHHHHHhcCCCCccCCc-----------cC
Confidence 889999999999999999999999999876 8999999998765 23
Q ss_pred CCCccccChHHHHHHHHHhCCeEEEEecCCCceEEEEEeCCCC
Q 017673 319 TMAGYGYGLPISRLYARYFGGDLQIISMEGYGTDAYLHLSRLG 361 (368)
Q Consensus 319 ~~~g~GlGL~i~k~iv~~~gG~i~v~s~~g~Gt~f~i~lP~~~ 361 (368)
..+|+|+||++||.+++.|||+++++|.+|+||+|+++||...
T Consensus 207 ~~~G~GlGL~iv~~~v~~~gG~i~v~s~~g~Gt~f~i~lPl~~ 249 (379)
T 1b3q_A 207 EVSGRGVGMDVVKNVVESLNGSMGIESEKDKGTKVTIRLPLTL 249 (379)
T ss_dssp -----CCCSHHHHHHHHHTTCEEEEEEETTTEEEEEEEEESSC
T ss_pred CCCCccccHHHHHHHHHHCCCEEEEEEcCCCCeEEEeccCCcc
Confidence 3569999999999999999999999999999999999999754
No 18
>1r62_A Nitrogen regulation protein NR(II); PII, histidine kinase, two component system, transfera; 1.60A {Escherichia coli} SCOP: d.122.1.3
Probab=99.92 E-value=1.3e-25 Score=185.69 Aligned_cols=144 Identities=23% Similarity=0.295 Sum_probs=106.0
Q ss_pred ccCCCHHHHHHHHHHHHHHHHHhhhCCCCceEEEcCCCc-eeeccchhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEE
Q 017673 189 DTKMSPVQVARNASEHARCVCLREYGSAPDFNIYGDPSF-TFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRI 267 (368)
Q Consensus 189 ~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~d~~~l~~vl~nLl~NAi~~~~~~~~~~~~~~~~I~i 267 (368)
.+.+++.+++++++..+... .. ..+.+.+..+... .+.+|+..|.+++.||+.||++|+... ++.|.|
T Consensus 5 ~~~~~l~~~~~~~~~~~~~~-~~---~~i~~~~~~~~~~~~i~~d~~~l~~il~nLl~NAik~~~~~-------~~~I~i 73 (160)
T 1r62_A 5 RVTESIHKVAERVVTLVSME-LP---DNVRLIRDYDPSLPELAHDPDQIEQVLLNIVRNALQALGPE-------GGEIIL 73 (160)
T ss_dssp CEEECHHHHHHHHHHHHTTT-CC---TTEEEEEECCTTCCCEEECHHHHHHHHHHHHHHHHHHHGGG-------CEEEEE
T ss_pred cccCCHHHHHHHHHHHHHhh-cc---cCcEEEEEcCCCCCeeeeCHHHHHHHHHHHHHHHHHHhhcc-------CCeEEE
Confidence 46789999999999887654 22 3567777766554 589999999999999999999999752 378999
Q ss_pred EEEeCCC----------eEEEEEeeeCCCCCCCCcccccccccccCCCCCCcccccccCCCCCCccccChHHHHHHHHHh
Q 017673 268 IVADGLE----------DVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAADKGTMAGYGYGLPISRLYARYF 337 (368)
Q Consensus 268 ~~~~~~~----------~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~~~~~~~~~~~g~GlGL~i~k~iv~~~ 337 (368)
.+...++ .+.|.|+|+|+||+++.++++|++|++++.. |+|+||++|+.+++.|
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~i~v~D~G~gi~~~~~~~lf~~~~~~~~~----------------g~GlGL~i~~~~~~~~ 137 (160)
T 1r62_A 74 RTRTAFQLTLHGERYRLAARIDVEDNGPGIPPHLQDTLFYPMVSGREG----------------GTGLGLSIARNLIDQH 137 (160)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEEEEECTTC------------------------------------CHHHHHHHHHHHHT
T ss_pred EEeccccccccccccccEEEEEEEeCCCCCCHHHHHHhhCccccCCCC----------------CCccCHHHHHHHHHHC
Confidence 9887776 8999999999999999999999999987755 9999999999999999
Q ss_pred CCeEEEEecCCCceEEEEEeCCC
Q 017673 338 GGDLQIISMEGYGTDAYLHLSRL 360 (368)
Q Consensus 338 gG~i~v~s~~g~Gt~f~i~lP~~ 360 (368)
||++++.+.+++ |+|++.||..
T Consensus 138 gG~l~i~s~~~~-~~~~i~lP~~ 159 (160)
T 1r62_A 138 SGKIEFTSWPGH-TEFSVYLPIR 159 (160)
T ss_dssp TCEEEEEEETTE-EEEEEEEEEE
T ss_pred CCeEEEEeCCCC-EEEEEEEecc
Confidence 999999999875 9999999963
No 19
>1i58_A Chemotaxis protein CHEA; beta-alpha sandwich, signaling protein, transferase; HET: ACP ADP; 1.60A {Thermotoga maritima} SCOP: d.122.1.3 PDB: 1i59_A* 1i5a_A* 1i5b_A* 1i5c_A* 1i5d_A*
Probab=99.91 E-value=3.7e-25 Score=188.59 Aligned_cols=156 Identities=16% Similarity=0.185 Sum_probs=121.8
Q ss_pred cCCCHHHHHHHHHHHHHHHHHhhhCCCCceEEEcCCC-ce-eeccchhHHHHHHHHHHHHHHHHHHhh----cCCCCCCC
Q 017673 190 TKMSPVQVARNASEHARCVCLREYGSAPDFNIYGDPS-FT-FPYVPSHLHLMVFELVKNSLRAVEERY----MDSDKVAP 263 (368)
Q Consensus 190 ~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~-~~~d~~~l~~vl~nLl~NAi~~~~~~~----~~~~~~~~ 263 (368)
+++++.++++.+...+...+..+ .+.+.+..+.+ .. ...+...+.+++.||+.||++|+.+.. ......++
T Consensus 3 ~~~~l~~~~~~~~~~~~~~~~~~---~~~i~~~~~~~~~~~~~~~~~~l~~il~nLl~NAik~~~~~~~~~~~~~~~~~~ 79 (189)
T 1i58_A 3 HMVPISFVFNRFPRMVRDLAKKM---NKEVNFIMRGEDTELDRTFVEEIGEPLLHLLRNAIDHGIEPKEERIAKGKPPIG 79 (189)
T ss_dssp SEEETHHHHTTHHHHHHHHHHHT---TCCEEEEEECTTCEEEHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHTSCSSE
T ss_pred eEecHHHHHHHHHHHHHHHHHHh---CCcEEEEEcCCcccccHHHHHHHHHHHHHHHHHHHHhhhccccccccccCCCCC
Confidence 46889999999999999888876 55555554333 11 233345566779999999999972100 00000157
Q ss_pred CEEEEEEeCCCeEEEEEeeeCCCCCCCCc------------------------ccccccccccCCCCCCcccccccCCCC
Q 017673 264 PIRIIVADGLEDVTIKVSDEGGGIPRSGL------------------------PKIFTYLYSTARNPLDENTDLAADKGT 319 (368)
Q Consensus 264 ~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~------------------------~~if~~f~~~~~~~~~~~~~~~~~~~~ 319 (368)
.|.|.+...++.+.|.|+|+|+||+++.+ +++|+|||+++.. ...
T Consensus 80 ~I~I~~~~~~~~~~i~V~D~G~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~if~~~~~~~~~-----------~~~ 148 (189)
T 1i58_A 80 TLILSARHEGNNVVIEVEDDGRGIDKEKIIRKAIEKGLIDESKAATLSDQEILNFLFVPGFSTKEK-----------VSE 148 (189)
T ss_dssp EEEEEEEEETTEEEEEEEECSSCCCHHHHHHHHHHTTSSCHHHHTTCCHHHHHGGGGSTTCSHHHH-----------HHG
T ss_pred eEEEEEEecCCEEEEEEEeCCCCcCHHHHhhhhhhccchhhhhhcccchhhhHHHhcCCccccccc-----------CCC
Confidence 89999999999999999999999999876 9999999998653 111
Q ss_pred CCccccChHHHHHHHHHhCCeEEEEecCCCceEEEEEeCC
Q 017673 320 MAGYGYGLPISRLYARYFGGDLQIISMEGYGTDAYLHLSR 359 (368)
Q Consensus 320 ~~g~GlGL~i~k~iv~~~gG~i~v~s~~g~Gt~f~i~lP~ 359 (368)
..|+|+||++|+.+++.|||++++.|.++.||+|++.||.
T Consensus 149 ~~g~GlGL~iv~~~~~~~~G~i~i~s~~~~Gt~~~i~lPl 188 (189)
T 1i58_A 149 VSGRGVGMDVVKNVVESLNGSISIESEKDKGTKVTIRLPL 188 (189)
T ss_dssp GGTCCCHHHHHHHHHHHTTCEEEEEEETTTEEEEEEEEEC
T ss_pred CCCCccCHHHHHHHHHHcCCEEEEEeCCCCceEEEEEEeC
Confidence 2589999999999999999999999999999999999996
No 20
>3ehh_A Sensor kinase (YOCF protein); four-helix bundle, GHL ATPase domain, transferase; HET: MSE ADP; 2.10A {Bacillus subtilis} PDB: 3ehj_A* 3gie_A* 3gif_A* 3gig_A* 3ehf_A*
Probab=99.91 E-value=1.8e-23 Score=182.09 Aligned_cols=189 Identities=15% Similarity=0.081 Sum_probs=130.7
Q ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHhcccCccccccChHHHHHHHHHHHHhhHHHHHhHHHHhhhcCCCCCCCcccc
Q 017673 108 RDFTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIGQHVELHNPNPPPHCIGY 187 (368)
Q Consensus 108 ~~~~~~l~~~~~~~~~~l~~i~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~li~~~l~l~~~~~~~~~~~~ 187 (368)
+....+.+.++|++.++|+.+...+..+..... ...+.....+..+......+...+..++...
T Consensus 26 ~er~~la~~l~~~l~~~L~~i~~~~~~~~~~~~-----~~~~~~~~~l~~i~~~~~~~~~~~r~~~~~~----------- 89 (218)
T 3ehh_A 26 EERQRMARDLVDTLGQKLSLMGLKSDLARKLIY-----KDPEQAARELKSVQQTARTSLNEVRKIVSSM----------- 89 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-----TCHHHHHHHHHHHHHHHHHHHHHHHHHHTTT-----------
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhc-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----------
Confidence 445668888899999999999877665544332 2234455555554433333333333333222
Q ss_pred cccCCCHHHHHHHHHHHHHHHHHhhhCCCCceEEEcCCCc--eeeccchhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCE
Q 017673 188 IDTKMSPVQVARNASEHARCVCLREYGSAPDFNIYGDPSF--TFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPI 265 (368)
Q Consensus 188 ~~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~d~~~l~~vl~nLl~NAi~~~~~~~~~~~~~~~~I 265 (368)
.+.++.+.+..+...+ ... ++.+.+..+... ....++..+.+++.|++.||++|++. +.|
T Consensus 90 --~~~~l~~~l~~~~~~~----~~~---~~~~~~~~~~~~~~~~~~~~~~l~~il~nll~Na~k~~~~---------~~i 151 (218)
T 3ehh_A 90 --KGIRLKDELINIKQIL----EAA---DIMFIYEEEKWPENISLLNENILSMCLKEAVTNVVKHSQA---------KTC 151 (218)
T ss_dssp --CCCCHHHHHHHHHHHH----HHT---TCEEECCCCCCCSCCCHHHHHHHHHHHHHHHHHHHHHTCC---------SEE
T ss_pred --CCcCHHHHHHHHHHHH----Hhc---CCEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCC---------CEE
Confidence 2456777776665554 333 556666554332 23566778999999999999999843 789
Q ss_pred EEEEEeCCCeEEEEEeeeCCCCCCCCcccccccccccCCCCCCcccccccCCCCCCccccChHHHHHHHHHhCCeEEEEe
Q 017673 266 RIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAADKGTMAGYGYGLPISRLYARYFGGDLQIIS 345 (368)
Q Consensus 266 ~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~i~v~s 345 (368)
.|.+...++.+.|.|+|+|+|||++.. . |+|+||++|+.+++.|||+|++.|
T Consensus 152 ~i~~~~~~~~~~i~V~D~G~Gi~~~~~------------~----------------g~GlGL~~~~~~v~~~gG~i~~~s 203 (218)
T 3ehh_A 152 RVDIQQLWKEVVITVSDDGTFKGEENS------------F----------------SKGHGLLGMRERLEFANGSLHIDT 203 (218)
T ss_dssp EEEEEEETTEEEEEEEESSCCCC------------------------------------CHHHHHHHHHHHTTCEEEEEC
T ss_pred EEEEEEeCCEEEEEEEECCcCCCCCCC------------C----------------CCCCCHHHHHHHHHHcCCEEEEeC
Confidence 999999999999999999999999863 2 899999999999999999999999
Q ss_pred cCCCceEEEEEeCCC
Q 017673 346 MEGYGTDAYLHLSRL 360 (368)
Q Consensus 346 ~~g~Gt~f~i~lP~~ 360 (368)
.+ ||+|+|+||..
T Consensus 204 ~~--Gt~~~i~lP~~ 216 (218)
T 3ehh_A 204 EN--GTKLTMAIPNN 216 (218)
T ss_dssp SS--SEEEEEEEEC-
T ss_pred CC--CeEEEEEEecC
Confidence 88 99999999975
No 21
>3ehg_A Sensor kinase (YOCF protein); GHL ATPase domain, transferase; HET: ATP; 1.74A {Bacillus subtilis}
Probab=99.86 E-value=2.3e-21 Score=154.36 Aligned_cols=123 Identities=18% Similarity=0.101 Sum_probs=98.6
Q ss_pred CCHHHHHHHHHHHHHHHHHhhhCCCCceEEEcCCC--ceeeccchhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEEE
Q 017673 192 MSPVQVARNASEHARCVCLREYGSAPDFNIYGDPS--FTFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIV 269 (368)
Q Consensus 192 ~~l~~li~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~d~~~l~~vl~nLl~NAi~~~~~~~~~~~~~~~~I~i~~ 269 (368)
+++.+.+..+...+ ... ++.+.+..+.+ .....++..+.+++.|++.||++|+.. +.|.|.+
T Consensus 2 v~l~~~l~~~~~~~----~~~---~i~~~~~~~~~~~~~~~~~~~~l~~il~nll~Na~k~~~~---------~~i~i~~ 65 (128)
T 3ehg_A 2 IRLKDELINIKQIL----EAA---DIMFIYEEEKWPENISLLNENILSMCLKEAVTNVVKHSQA---------KTCRVDI 65 (128)
T ss_dssp CCHHHHHHHHHHHH----HHT---TCEEECCCCSCCSCCCHHHHHHHHHHHHHHHHHHHHHTCC---------SEEEEEE
T ss_pred ccHHHHHHHHHHHH----HHc---CCEEEEEcCccccccCHHHHHHHHHHHHHHHHHHHhcCCC---------cEEEEEE
Confidence 45655555555443 333 56666655432 224567788999999999999999743 7899999
Q ss_pred EeCCCeEEEEEeeeCCCCCCCCcccccccccccCCCCCCcccccccCCCCCCccccChHHHHHHHHHhCCeEEEEecCCC
Q 017673 270 ADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAADKGTMAGYGYGLPISRLYARYFGGDLQIISMEGY 349 (368)
Q Consensus 270 ~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~i~v~s~~g~ 349 (368)
...++.+.|.|+|+|+|||++.. . |+|+||++++.+++.|||++++.|.+
T Consensus 66 ~~~~~~~~i~V~D~G~Gi~~~~~------------~----------------g~GlGL~~~~~~~~~~gG~i~~~s~~-- 115 (128)
T 3ehg_A 66 QQLWKEVVITVSDDGTFKGEENS------------F----------------SKGHGLLGMRERLEFANGSLHIDTEN-- 115 (128)
T ss_dssp EEETTEEEEEEEESSCCCSCSSC------------C----------------CTTSHHHHHHHHHHHTTCEEEEECSS--
T ss_pred EEeCCEEEEEEEECCcCcCcccC------------C----------------CCCccHHHHHHHHHHcCCEEEEEeCC--
Confidence 99999999999999999998863 2 88999999999999999999999988
Q ss_pred ceEEEEEeCCC
Q 017673 350 GTDAYLHLSRL 360 (368)
Q Consensus 350 Gt~f~i~lP~~ 360 (368)
||+|++.||..
T Consensus 116 Gt~~~i~lP~~ 126 (128)
T 3ehg_A 116 GTKLTMAIPNN 126 (128)
T ss_dssp SEEEEEEEEC-
T ss_pred CEEEEEEEecC
Confidence 99999999975
No 22
>3zxo_A Redox sensor histidine kinase response regulator; transferase; HET: MSE; 1.90A {Mycobacterium tuberculosis}
Probab=99.83 E-value=7.3e-21 Score=151.50 Aligned_cols=123 Identities=23% Similarity=0.200 Sum_probs=100.4
Q ss_pred cCCCHHHHHHHHHHHHHHHHHhhhCCCCceEEEcCCCc--eeeccchhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEE
Q 017673 190 TKMSPVQVARNASEHARCVCLREYGSAPDFNIYGDPSF--TFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRI 267 (368)
Q Consensus 190 ~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~d~~~l~~vl~nLl~NAi~~~~~~~~~~~~~~~~I~i 267 (368)
+.+++.+++++++..+ .. ..+.+.+..+.+. ....++..|.+++.||+.||++|++ .+.|.|
T Consensus 3 ~~~~l~~~l~~~~~~~----~~---~~~~~~~~~~~~~~~~~~~~~~~l~~il~nll~NA~k~~~---------~~~i~i 66 (129)
T 3zxo_A 3 MVTRLRQRIDAAVAQF----AD---SGLRTSVQFVGPLSVVDSALADQAEAVVREAVSNAVRHAA---------ASTLTV 66 (129)
T ss_dssp --CCHHHHHHHHHHHH----SC---TTSEEEEEEESCGGGSCHHHHHHHHHHHHHHHHHCCCCSS---------CCEEEE
T ss_pred ccccHHHHHHHHHHHH----hh---cCceEEEEecCCcccCCHHHHHHHHHHHHHHHHHHHHhCC---------CceEEE
Confidence 4678888888888776 22 2555555544433 2345588999999999999999983 378999
Q ss_pred EEEeCCCeEEEEEeeeCCCCCCCCcccccccccccCCCCCCcccccccCCCCCCccccChHHHHHHHHHhCCeEEEEecC
Q 017673 268 IVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAADKGTMAGYGYGLPISRLYARYFGGDLQIISME 347 (368)
Q Consensus 268 ~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~i~v~s~~ 347 (368)
.+..+++ +.|.|+|+|+||+++. +|+||++|+.+++.|||++.+.+.+
T Consensus 67 ~~~~~~~-~~i~v~D~G~gi~~~~-------------------------------~GlGL~i~~~~~~~~gG~i~~~~~~ 114 (129)
T 3zxo_A 67 RVKVDDD-LCIEVTDNGRGMPDEF-------------------------------TGSGLTNLRQRAEQAGGEFTLASMP 114 (129)
T ss_dssp EEEESSE-EEEEEEECCCCCTTTT-------------------------------CSHHHHHHHHHHHHTTCEEEEEECT
T ss_pred EEEEcCC-EEEEEecCCCCCCccc-------------------------------CCcCHHHHHHHHHHcCCEEEEeeCC
Confidence 9998888 9999999999998762 5899999999999999999999998
Q ss_pred C-CceEEEEEeCCC
Q 017673 348 G-YGTDAYLHLSRL 360 (368)
Q Consensus 348 g-~Gt~f~i~lP~~ 360 (368)
+ +|++|++.||..
T Consensus 115 ~~~G~~~~i~lP~~ 128 (129)
T 3zxo_A 115 GASGTVLRWSAPLS 128 (129)
T ss_dssp TTCCEEEEEEEESC
T ss_pred CCCcEEEEEEecCC
Confidence 8 899999999964
No 23
>3zxq_A Hypoxia sensor histidine kinase response regulato; transferase; 1.90A {Mycobacterium tuberculosis}
Probab=99.81 E-value=4.8e-20 Score=145.69 Aligned_cols=120 Identities=19% Similarity=0.138 Sum_probs=94.9
Q ss_pred CHHHHHHHHHHHHHHHHHhhhCCCCceEEEcCCC--ceeeccchhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEEEE
Q 017673 193 SPVQVARNASEHARCVCLREYGSAPDFNIYGDPS--FTFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVA 270 (368)
Q Consensus 193 ~l~~li~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~d~~~l~~vl~nLl~NAi~~~~~~~~~~~~~~~~I~i~~~ 270 (368)
++.+.+++++..+ .. ..+.+.+..+.+ .....++..+.+++.|++.||++|++. +.|.|.+.
T Consensus 2 ~l~~~l~~~~~~~----~~---~~~~~~~~~~~~~~~~~~~~~~~l~~il~nll~Na~k~~~~---------~~i~i~~~ 65 (124)
T 3zxq_A 2 GLRHRLDKVIDQL----AI---PALHTTVQYTGPLSVVDTVLANHAEAVLREAVSNAVRHANA---------TSLAINVS 65 (124)
T ss_dssp CHHHHHHHHHHHH----TT---TTSEEEEEEESCGGGCCHHHHHHHHHHHHHHHHHHHTCTTC---------CEEEEEEE
T ss_pred cHHHHHHHHHHHH----Hh---cCceEEEEeeCccccccHHHHHHHHHHHHHHHHHHHHhCCC---------CEEEEEEE
Confidence 4555666665554 22 244555554333 223445778999999999999999854 68999998
Q ss_pred eCCCeEEEEEeeeCCCCCCCCcccccccccccCCCCCCcccccccCCCCCCccccChHHHHHHHHHhCCeEEEEecCCCc
Q 017673 271 DGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAADKGTMAGYGYGLPISRLYARYFGGDLQIISMEGYG 350 (368)
Q Consensus 271 ~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~i~v~s~~g~G 350 (368)
..++ +.+.|+|+|+||+++ ..|+||++++.+++.|||++++.+.+++|
T Consensus 66 ~~~~-~~i~v~D~G~gi~~~-------------------------------~~GlGL~~~~~~~~~~gG~i~~~~~~~~G 113 (124)
T 3zxq_A 66 VEDD-VRVEVVDDGVGISGD-------------------------------ITESGLRNLRQRADDAGGEFTVENMPTGG 113 (124)
T ss_dssp EEEE-EEEEEEECCCSSCGG-------------------------------GSHHHHHHHHHHHHHHTCEEEEEECTTSS
T ss_pred eCCC-EEEEEEECCCCCCcc-------------------------------ccccCHHHHHHHHHHhCCEEEEEEcCCCc
Confidence 8888 999999999999876 24899999999999999999999999999
Q ss_pred eEEEEEeCCC
Q 017673 351 TDAYLHLSRL 360 (368)
Q Consensus 351 t~f~i~lP~~ 360 (368)
|+|+++||..
T Consensus 114 ~~~~i~lP~~ 123 (124)
T 3zxq_A 114 TLLRWSAPLR 123 (124)
T ss_dssp EEEEEEEECC
T ss_pred EEEEEEEecC
Confidence 9999999964
No 24
>1th8_A Anti-sigma F factor; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: d.122.1.3 PDB: 1thn_A* 1til_A* 1l0o_A* 1tid_A*
Probab=99.77 E-value=5.4e-19 Score=143.72 Aligned_cols=107 Identities=22% Similarity=0.245 Sum_probs=87.5
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEEEEeCCCeEEEEEeeeCCCCCCCCcccccccccccCCCCCCcc
Q 017673 231 YVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDEN 310 (368)
Q Consensus 231 ~d~~~l~~vl~nLl~NAi~~~~~~~~~~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~ 310 (368)
.|...+.+++.||+.||++|+.... .++.|.|.+...++.+.|.|+|+|+||+ .++++|++|++++..
T Consensus 35 ~~~~~l~~il~~l~~Nai~h~~~~~-----~~~~I~i~~~~~~~~~~i~V~D~G~g~~--~~~~~~~~~~~~~~~----- 102 (145)
T 1th8_A 35 DELTEIKTVVSEAVTNAIIHGYNND-----PNGIVSISVIIEDGVVHLTVRDEGVGIP--DIEEARQPLFTTKPE----- 102 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSTTC-----TTSEEEEEEEEETTEEEEEEEECSSCCS--CHHHHTCCC-----------
T ss_pred hhHHHHHHHHHHHHHHHHHHhcCCC-----CCCEEEEEEEEeCCEEEEEEEECCCCcC--hHHHhhcccccCCCC-----
Confidence 4567899999999999999985411 1478999999889999999999999999 789999999988753
Q ss_pred cccccCCCCCCccccChHHHHHHHHHhCCeEEEEecCCCceEEEEEeCCCCC
Q 017673 311 TDLAADKGTMAGYGYGLPISRLYARYFGGDLQIISMEGYGTDAYLHLSRLGD 362 (368)
Q Consensus 311 ~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~i~v~s~~g~Gt~f~i~lP~~~~ 362 (368)
..|.|+||++|+.+++ ++++.+.+++||+|++.||....
T Consensus 103 ---------~~~~GlGL~iv~~~~~----~i~~~~~~~~Gt~v~~~lp~~~~ 141 (145)
T 1th8_A 103 ---------LERSGMGFTIMENFMD----EVIVESEVNKGTTVYLKKHGIHH 141 (145)
T ss_dssp ----------CCCSCHHHHHHHHSS----EEEEEEETTTEEEEEEEECCC--
T ss_pred ---------CCCCcchHHHHHHHHh----eEEEEeCCCCCEEEEEEEecccc
Confidence 3589999999999998 89999999999999999998643
No 25
>1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A*
Probab=99.74 E-value=2.6e-18 Score=164.62 Aligned_cols=116 Identities=24% Similarity=0.300 Sum_probs=96.2
Q ss_pred eeeccchhHHHHHHHHHHHHHHHHHHhhcCCCCCCC---CEEEEEEeCC---CeEEEEEeeeCCCCCCCCcccccccccc
Q 017673 228 TFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAP---PIRIIVADGL---EDVTIKVSDEGGGIPRSGLPKIFTYLYS 301 (368)
Q Consensus 228 ~~~~d~~~l~~vl~nLl~NAi~~~~~~~~~~~~~~~---~I~i~~~~~~---~~~~i~V~D~G~Gi~~~~~~~if~~f~~ 301 (368)
.+..|+..|.+++.||++||++|+.. ++ .|.|.+...+ +.+.|+|+|||+||+++.++++|++||+
T Consensus 25 ~~~~d~~~L~qvl~nLv~NAida~~~--------gg~~p~I~I~i~~~~~~~~~~~I~V~DnG~GI~~e~l~~iF~~f~~ 96 (471)
T 1mu5_A 25 GFPNPARALYQTVRELIENSLDATDV--------HGILPNIKITIDLIDDARQIYKVNVVDNGIGIPPQEVPNAFGRVLY 96 (471)
T ss_dssp TCSSHHHHHHHHHHHHHHHHHHTTGG--------GTCCCEEEEEEEEEETTTTEEEEEEECCSCCCCGGGHHHHHHCCCC
T ss_pred EEeCCHHHHHHHHHHHHHHHHHHhhc--------CCCceEEEEEEEECCCcCcEEEEEEEECCCCCCHHHHHHHhccccc
Confidence 35677889999999999999999977 34 7999887654 7899999999999999999999999977
Q ss_pred cCCCCCCcccccccCCCCCCccccChHHHHHHHHHhCCe-EEEEecCCCce-EEEEEeCCC
Q 017673 302 TARNPLDENTDLAADKGTMAGYGYGLPISRLYARYFGGD-LQIISMEGYGT-DAYLHLSRL 360 (368)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~-i~v~s~~g~Gt-~f~i~lP~~ 360 (368)
+.... .....+|+|+||++|+.+++.|||+ +++.|..+.|+ .|++.||..
T Consensus 97 tsk~~---------~~~~~gg~GLGL~iv~~l~~~~gG~~i~v~S~~~~g~~~~~~~Lpl~ 148 (471)
T 1mu5_A 97 SSKYV---------NRQTRGMYGLGVKAAVLYSQMHQDKPIEIETSPVNSKRIYTFKLKID 148 (471)
T ss_dssp C-CCC---------CSCCSCSCTTTHHHHHHHHHHHCCCCEEEEEECTTCSEEEEEEEEEC
T ss_pred ccccc---------cccCCCCceeeHHHHHHHHHHhCCCceeEEEecCCCceEEEEEEecc
Confidence 65430 1133568999999999999999999 99999988776 777666644
No 26
>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae}
Probab=99.74 E-value=3.2e-18 Score=165.82 Aligned_cols=119 Identities=23% Similarity=0.253 Sum_probs=97.5
Q ss_pred CCceeecc-chhHHHHHHHHHHHHHHHHHHhhcCCCCCCC---CEEEEEEeCC---CeEEEEEeeeCCCCCCCCcccccc
Q 017673 225 PSFTFPYV-PSHLHLMVFELVKNSLRAVEERYMDSDKVAP---PIRIIVADGL---EDVTIKVSDEGGGIPRSGLPKIFT 297 (368)
Q Consensus 225 ~~~~~~~d-~~~l~~vl~nLl~NAi~~~~~~~~~~~~~~~---~I~i~~~~~~---~~~~i~V~D~G~Gi~~~~~~~if~ 297 (368)
++..+..+ +..|.+++.||+.||++|+.. ++ .|.|.+...+ +.+.|+|+|||+|||++.++++|+
T Consensus 20 ~~l~i~~~d~~~L~qvl~NLV~NAida~~~--------gg~~p~I~I~i~~~~~~~~~~~I~V~DnG~GI~~e~l~~iF~ 91 (530)
T 2zbk_B 20 PELAGFPNPARALYQTVRELIENSLDATDV--------HGILPNIKITIDLIDDARQIYKVNVVDNGIGIPPQEVPNAFG 91 (530)
T ss_dssp CGGGTCSSHHHHHHHHHHHHHHHHHTTTTT--------TTCCCCCEEEEEEEETTTTEEEEEEECCSCCCCGGGSHHHHT
T ss_pred CCceEEcCcHHHHHHHHHHHHHHHHHHHhc--------cCCCeEEEEEEEECCCcCceEEEEEEECCCCCCHHHHHHHhc
Confidence 34444444 489999999999999999876 35 8999987655 789999999999999999999999
Q ss_pred cccccCCCCCCcccccccCCCCCCccccChHHHHHHHHHhCCe-EEEEecCCCce-EEEEEeCCC
Q 017673 298 YLYSTARNPLDENTDLAADKGTMAGYGYGLPISRLYARYFGGD-LQIISMEGYGT-DAYLHLSRL 360 (368)
Q Consensus 298 ~f~~~~~~~~~~~~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~-i~v~s~~g~Gt-~f~i~lP~~ 360 (368)
+|+++.... .....+|+|+||++|+.+++.|||+ +++.|.++.|+ .|++.||..
T Consensus 92 ~f~~tsk~~---------~~~~~gg~GLGLsiv~~l~~~~gG~~I~V~S~~~~g~~~~~~~Lpl~ 147 (530)
T 2zbk_B 92 RVLYSSKYV---------NRQTRGMYGLGVKAAVLYSQMHQDKPIEIETSPVNSKRIYTFKLKID 147 (530)
T ss_dssp SCCCSCCCC---------CSCCSCSSSSHHHHHHHHHHHHCCCCEEEEEECTTCSEEEEEEEEEE
T ss_pred cccccCCcc---------cccCCCCccchHHHHHHHHHHhCCCceEEEEecCCCeEEEEEEEEec
Confidence 997765430 1134579999999999999999999 99999988776 777776643
No 27
>2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei}
Probab=99.58 E-value=2e-15 Score=148.16 Aligned_cols=120 Identities=30% Similarity=0.358 Sum_probs=94.3
Q ss_pred eeeccchhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEEEEeCC-CeEEEEEeeeCCCCCCCCcccccccccccCCCC
Q 017673 228 TFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGL-EDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNP 306 (368)
Q Consensus 228 ~~~~d~~~l~~vl~nLl~NAi~~~~~~~~~~~~~~~~I~i~~~~~~-~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~ 306 (368)
.+.+|+..|.+++.||+.||++|+.... ..+.|.|.+..++ +.+.|+|+|+|+|||++.++++|.+|+++....
T Consensus 30 ~~~~D~~~L~~Vl~ELV~NAIDa~~~~g-----~~~~I~V~i~~~~~~~~~I~V~DnG~GIp~e~l~~iF~~~~atskf~ 104 (621)
T 2q2e_B 30 GFDSAPRSLITTVKEAVDNALDACEEAG-----ILPDILVQVERTGPDYVTVIIEDNGPGIVREQIPKVFAKLLYGSRFH 104 (621)
T ss_dssp SCSSHHHHHHHHHHHHHHHHHHHHTTTS-----CSCEEEECCEEETTTEEEEEEECCSCCCCGGGHHHHHSCCCCC--CC
T ss_pred EEecCHHHHHHHHHHHHHHHHHHHhhcC-----CCcEEEEEEEECCCcEEEEEEEECCCCCCHHHHHHHhhhhccCCccc
Confidence 3678999999999999999999997510 0137899887776 789999999999999999999998887665320
Q ss_pred CCcccccccCCCCCCccccChHHHHHHHHHhCCe-EEEEecCC---CceEEEEEeCCC
Q 017673 307 LDENTDLAADKGTMAGYGYGLPISRLYARYFGGD-LQIISMEG---YGTDAYLHLSRL 360 (368)
Q Consensus 307 ~~~~~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~-i~v~s~~g---~Gt~f~i~lP~~ 360 (368)
. .....+|.|+||++|+.+++.|||. |++.|..+ .|++|++.+|..
T Consensus 105 ~--------~~~s~Gg~GlGLsiv~~ls~~~gG~~I~V~S~~~gg~~g~~~~~~lp~~ 154 (621)
T 2q2e_B 105 A--------LKQSRGQQGIGISAAVLYAQMTAGRHTKILSKTSPTAPAHYYELMINTS 154 (621)
T ss_dssp C--------CC-CCSSSSHHHHHHHHHHHHHTCCCCEEEEECSSSSCEEEEECCCCSS
T ss_pred c--------ccccCCCceechhhhhHHHHHhCCCceeEEeeccCCccceEEEEecchh
Confidence 0 1123468999999999999999999 89998865 366666666654
No 28
>1h7s_A PMS1 protein homolog 2; DNA repair, GHL ATPase, mismatch repair, HNPCC; 1.95A {Homo sapiens} SCOP: d.14.1.3 d.122.1.2 PDB: 1h7u_A* 1ea6_A*
Probab=98.85 E-value=3.7e-09 Score=98.03 Aligned_cols=60 Identities=30% Similarity=0.293 Sum_probs=45.5
Q ss_pred hHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEEEEeCCCeEEEEEeeeCCCCCCCCcccccccccccCCC
Q 017673 235 HLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARN 305 (368)
Q Consensus 235 ~l~~vl~nLl~NAi~~~~~~~~~~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~ 305 (368)
.+.+++.||++||++|. .+.|.|.+.. ++...|+|.|||+||+++.++++|++|++++..
T Consensus 34 ~~~~vl~eLv~NAiDA~----------a~~I~I~i~~-~~~~~I~V~DnG~Gi~~~~l~~~f~~~~tsK~~ 93 (365)
T 1h7s_A 34 SLSTAVKELVENSLDAG----------ATNIDLKLKD-YGVDLIEVSDNGCGVEEENFEGLTLKHHTSKIQ 93 (365)
T ss_dssp CHHHHHHHHHHHHHHTT----------CSEEEEEEEG-GGTSEEEEEECSCCCCGGGSGGGGC--------
T ss_pred hHHHHHHHHHHHHHHCC----------CCEEEEEEEe-CCcEEEEEEECCCCcCHHHHHHHhhhccccccc
Confidence 58999999999999974 3578888865 355789999999999999999999999998754
No 29
>3na3_A DNA mismatch repair protein MLH1; MUTL protein homolog 1, DNA damag repair, structural genomics consortium, SGC, protein bindin; HET: DNA ATP; 2.50A {Homo sapiens}
Probab=98.79 E-value=1.1e-08 Score=93.77 Aligned_cols=60 Identities=22% Similarity=0.311 Sum_probs=52.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEEEEeCCCeEEEEEeeeCCCCCCCCcccccccccccCCC
Q 017673 235 HLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARN 305 (368)
Q Consensus 235 ~l~~vl~nLl~NAi~~~~~~~~~~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~ 305 (368)
.+.+++.||++||++|. .+.|.|.+.. ++...|+|.|||+|||++.++.+|++|++++..
T Consensus 28 ~~~~vv~eLv~NAidA~----------a~~I~I~i~~-~~~~~I~V~DnG~GI~~~~l~~~~~~~~tsK~~ 87 (348)
T 3na3_A 28 RPANAIKEMIENCLDAK----------STSIQVIVKE-GGLKLIQIQDNGTGIRKEDLDIVCERFTTSKLQ 87 (348)
T ss_dssp SHHHHHHHHHHHHHHTT----------CSEEEEEEEG-GGTSEEEEEECSCCCCGGGGGTTTSTTCCSSCC
T ss_pred CHHHHHHHHHHHHHHcC----------CCEEEEEEEe-CCEEEEEEEECCcCcChHHhhhhhccccccccC
Confidence 58899999999999983 3688888863 455789999999999999999999999999865
No 30
>1kij_A DNA gyrase subunit B; topoisomerase, gyrase B-coumarin complex, isomerase; HET: DNA NOV; 2.30A {Thermus thermophilus} SCOP: d.14.1.3 d.122.1.2
Probab=98.71 E-value=1.9e-08 Score=94.09 Aligned_cols=87 Identities=22% Similarity=0.288 Sum_probs=59.4
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEEEEeCCCeEEEEEeeeCCCCCCCCccc--------cccccccc
Q 017673 231 YVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPK--------IFTYLYST 302 (368)
Q Consensus 231 ~d~~~l~~vl~nLl~NAi~~~~~~~~~~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~--------if~~f~~~ 302 (368)
++...+..++.|+++||+++ + .+.|.|.+..++ .|+|.|+|+|||++..++ +|.+++++
T Consensus 32 g~~~~v~Elv~N~iD~a~~~----~------~~~I~V~i~~~~---~i~V~DnG~GIp~~~~~~~~~~~~e~if~~~~~~ 98 (390)
T 1kij_A 32 GYHHLFKEILDNAVDEALAG----Y------ATEILVRLNEDG---SLTVEDNGRGIPVDLMPEEGKPAVEVIYNTLHSG 98 (390)
T ss_dssp HHHHHHHHHHHHHHHHHHTT----S------CCEEEEEECTTS---CEEEEECSSCCCCSEETTTTEEHHHHHHHSSCEE
T ss_pred hHHHHHHHHHHHHHHHhhhC----C------CCEEEEEEEcCC---EEEEEEcCCCCCHHHhhhccccchhhheeeeeec
Confidence 44445555666666666542 1 478888886553 899999999999999888 89888776
Q ss_pred CCCCCCcccccccCCCCCCccccChHHHHHHHHH
Q 017673 303 ARNPLDENTDLAADKGTMAGYGYGLPISRLYARY 336 (368)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~g~GlGL~i~k~iv~~ 336 (368)
..-.. +......++.|+||++|+.+++.
T Consensus 99 ~kf~~------~~~~~s~G~~G~Gls~v~als~~ 126 (390)
T 1kij_A 99 GKFEQ------GAYKVSGGLHGVGASVVNALSEW 126 (390)
T ss_dssp SGGGG------SSCCCCSCSSTTSHHHHHHTEEE
T ss_pred ccccC------ccccccCCCCCcceeeecccccc
Confidence 43100 00112345699999999999863
No 31
>3ke6_A Protein RV1364C/MT1410; anti-sigma factor, anti-sigma factor antagonist, phosphatase serine kinase, ATPase, unknown function; 2.60A {Mycobacterium tuberculosis}
Probab=98.71 E-value=2e-08 Score=94.79 Aligned_cols=90 Identities=21% Similarity=0.168 Sum_probs=62.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEEEEeC-CCeEEEEEeeeCCCCCCCCcccccccccccCCCCCCcccc
Q 017673 234 SHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADG-LEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTD 312 (368)
Q Consensus 234 ~~l~~vl~nLl~NAi~~~~~~~~~~~~~~~~I~i~~~~~-~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~~ 312 (368)
..+..++.||+.||++|+.+. ..++.|.|.+... ++.+.|.|+|+|+|+|+. ..
T Consensus 296 ~~~~l~v~El~~Nav~Ha~~~-----~~~g~i~v~~~~~~~~~l~i~V~D~G~g~~~~-----------~~--------- 350 (399)
T 3ke6_A 296 ADIVHAISEFVENAVEHGYAT-----DVSKGIVVAAALAGDGNVRASVIDRGQWKDHR-----------DG--------- 350 (399)
T ss_dssp HHHHHHHHHHHHHHHHHBCCS-----CCTTCEEEEEEECTTSEEEEEEEESCBC--------------------------
T ss_pred HHHHHHHHHHHHHHHHhcccC-----CCCceEEEEEEEcCCCEEEEEEEECCCCCCCC-----------CC---------
Confidence 468889999999999997321 1147899999877 568999999999999976 11
Q ss_pred cccCCCCCCccccChHHHHHHHHHhCCeEEEEecCCCceEEEEEeCCC
Q 017673 313 LAADKGTMAGYGYGLPISRLYARYFGGDLQIISMEGYGTDAYLHLSRL 360 (368)
Q Consensus 313 ~~~~~~~~~g~GlGL~i~k~iv~~~gG~i~v~s~~g~Gt~f~i~lP~~ 360 (368)
..+.|+||++++.+++.++ +.+. +.|+++++.+|..
T Consensus 351 -------~~~~G~GL~lv~~l~~~~~----~~~~-~~G~~v~~~~~~~ 386 (399)
T 3ke6_A 351 -------ARGRGRGLAMAEALVSEAR----IMHG-AGGTTATLTHRLS 386 (399)
T ss_dssp -------------CHHHHHTTSSEEE----EEEE-TTEEEEEEEEECE
T ss_pred -------CCCCCcHHHHHHHHHHhee----eEEC-CCcEEEEEEEEcC
Confidence 1377999999999887554 4444 4599999999854
No 32
>1b63_A MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A {Escherichia coli K12} SCOP: d.14.1.3 d.122.1.2 PDB: 1nhh_A* 1nhi_A* 1bkn_A 1nhj_A* 1b62_A*
Probab=98.67 E-value=9.4e-09 Score=94.41 Aligned_cols=84 Identities=27% Similarity=0.234 Sum_probs=62.3
Q ss_pred hHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEEEEeCCCeEEEEEeeeCCCCCCCCcccccccccccCCCCCCcccccc
Q 017673 235 HLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLA 314 (368)
Q Consensus 235 ~l~~vl~nLl~NAi~~~~~~~~~~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~~~~ 314 (368)
.+.+++.||++||++|. .+.|.|.+.. ++...|+|.|||.||++++++.+|.+|++.+....+ |.
T Consensus 24 ~~~~~v~ELi~NaidA~----------a~~I~I~i~~-~~~~~i~V~DnG~Gi~~~~l~~~~~~~~tsK~~~~~---d~- 88 (333)
T 1b63_A 24 RPASVVKELVENSLDAG----------ATRIDIDIER-GGAKLIRIRDNGCGIKKDELALALARHATSKIASLD---DL- 88 (333)
T ss_dssp SHHHHHHHHHHHHHHTT----------CSEEEEEEEG-GGTSEEEEEECSCCCCGGGHHHHHSTTCCSSCCSHH---HH-
T ss_pred CHHHHHHHHHHHHHHCC----------CCeEEEEEEe-CCceEEEEEEcCCCcCHHHHHHhhhcccccCccccc---hh-
Confidence 58899999999999985 2578888865 344789999999999999999999999987642000 00
Q ss_pred cCCCCCCccccChHHHHHH
Q 017673 315 ADKGTMAGYGYGLPISRLY 333 (368)
Q Consensus 315 ~~~~~~~g~GlGL~i~k~i 333 (368)
......++.|+||+.+..+
T Consensus 89 ~~~~~~G~~G~gl~si~~v 107 (333)
T 1b63_A 89 EAIISLGFRGEALASISSV 107 (333)
T ss_dssp HTCCSSCCSSCHHHHHHTT
T ss_pred hhccccCccccchhhhhcC
Confidence 0012345689999887654
No 33
>3h4l_A DNA mismatch repair protein PMS1; ATP binding, DNA repair, DNA damage, nucleus, phosphop DNA binding protein, protein binding; HET: DNA ANP; 2.50A {Saccharomyces cerevisiae}
Probab=98.62 E-value=5.7e-08 Score=89.77 Aligned_cols=60 Identities=33% Similarity=0.341 Sum_probs=49.5
Q ss_pred hHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEEEEeCCCeEEEEEeeeCCCCCCCCcccccccccccCCC
Q 017673 235 HLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARN 305 (368)
Q Consensus 235 ~l~~vl~nLl~NAi~~~~~~~~~~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~ 305 (368)
.+.+++.||++||++|. .+.|.|.+. +++...|+|.|||+||+++.++.+|++|++++..
T Consensus 25 ~~~~vv~eLv~NaiDA~----------a~~I~I~i~-~~~~~~i~V~DnG~Gi~~~~l~~~~~~~~tsK~~ 84 (367)
T 3h4l_A 25 DLTTAVKELVDNSIDAN----------ANQIEIIFK-DYGLESIECSDNGDGIDPSNYEFLALKHYTSKIA 84 (367)
T ss_dssp SHHHHHHHHHHHHHHTT----------CSEEEEEEE-TTTTSEEEEEECSCCCCGGGTTTTTCCEEC----
T ss_pred CHHHHHHHHHHHHHHCC----------CCEEEEEEE-eCCEEEEEEEECCCCcChhHhccceeccccCcCC
Confidence 58899999999999974 367888875 4557799999999999999999999999998865
No 34
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A
Probab=98.61 E-value=1.2e-06 Score=73.60 Aligned_cols=157 Identities=9% Similarity=0.081 Sum_probs=90.4
Q ss_pred CCCchhHHHHHHHHHHHHHhccCchHHHHHHHHHHhcccCccccccChHHHHHHHHHHHHhhHHHHHhHHHHhhhcCCCC
Q 017673 101 IRSTSDERDFTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIGQHVELHNPNP 180 (368)
Q Consensus 101 ~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~li~~~l~l~~~~~ 180 (368)
+.++...+.+.+.++...||+.|-|..|. |+-++. ..++...++..+....... ..+.+..
T Consensus 12 ~~~l~~~~~~~~~LR~qrHdf~NkLqvI~-GLlql~----------~ydea~~yI~~~~~~~q~~-------~~~~~i~- 72 (192)
T 1ixm_A 12 ISDTALTNELIHLLGHSRHDWMNKLQLIK-GNLSLQ----------KYDRVFEMIEEMVIDAKHE-------SKLSNLK- 72 (192)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHTT----------CHHHHHHHHHHHHHHHHHH-------HHHHTTT-
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHH-HHHHcC----------CHHHHHHHHHHHHHHHHHH-------HHHHhCC-
Confidence 44666678889999999999999999999 554444 3556777777654433321 1122220
Q ss_pred CCCcccccccCCCHHHHHHHHHHHHHHHHHhhhCCCCceEE-EcCCCceeeccchhHHHHHHHHHHHHHHHHHHhhcCCC
Q 017673 181 PPHCIGYIDTKMSPVQVARNASEHARCVCLREYGSAPDFNI-YGDPSFTFPYVPSHLHLMVFELVKNSLRAVEERYMDSD 259 (368)
Q Consensus 181 ~~~~~~~~~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~~d~~~l~~vl~nLl~NAi~~~~~~~~~~~ 259 (368)
.+ .+..++ ..... ....+.+.+ ..++...+...|. -+.||+.||..+....-. .
T Consensus 73 ~P----------~la~lL-------l~K~~--~a~e~~i~lev~~~~s~l~~~~~----~lgnLi~na~~Ai~~~~~--~ 127 (192)
T 1ixm_A 73 TP----------HLAFDF-------LTFNW--KTHYMTLEYEVLGEIKDLSAYDQ----KLAKLMRKLFHLFDQAVS--R 127 (192)
T ss_dssp CH----------HHHHHH-------HHGGG--SCCSSEEEEEEESSCCCCTTTHH----HHHHHHHHHHHHHHHHBC--T
T ss_pred CH----------HHHHHH-------HHHHH--HhccCCeEEEEecCccccCCCcH----HHHHHHHHHHHHHHhhhc--c
Confidence 00 111111 11111 123556666 3343333333333 347888888887743100 0
Q ss_pred CCCCCEEEEEEeC--CCeEEEEEeeeCCCCCCCCcccccccccc
Q 017673 260 KVAPPIRIIVADG--LEDVTIKVSDEGGGIPRSGLPKIFTYLYS 301 (368)
Q Consensus 260 ~~~~~I~i~~~~~--~~~~~i~V~D~G~Gi~~~~~~~if~~f~~ 301 (368)
...+.|.|++... ++.+.|.|.|+|++|+++.++++|+..|+
T Consensus 128 ~~~~~I~i~i~~~~~~~~l~i~V~d~G~~i~~e~~~~if~~~~~ 171 (192)
T 1ixm_A 128 ESENHLTVSLQTDHPDRQLILYLDFHGAFADPSAFDDIRQNGYE 171 (192)
T ss_dssp TSCCEEEEEEECCCSSSSCEEEEEEESCBSCGGGCC--------
T ss_pred CCCCeEEEEEEEecCCCEEEEEEEeCCCCCCHHHHHHHHhCCCC
Confidence 1147899999887 78999999999999999999999986654
No 35
>2wer_A ATP-dependent molecular chaperone HSP82; ATPase, ATP-binding, phosphoprotein, stress respo nucleotide-binding; HET: RDC; 1.60A {Saccharomyces cerevisiae} PDB: 2weq_A* 2wep_A* 1zwh_A* 1zw9_A* 2fxs_A* 3c11_A* 3c0e_A* 2yge_A* 2ygf_A* 2akp_A
Probab=98.43 E-value=6.6e-08 Score=83.46 Aligned_cols=122 Identities=20% Similarity=0.257 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHHHHHhhcC----C--CCCCCCEEEEEEeCCCeEEEEEeeeCCCCCCCCcccccccccccCCC-CCCcc
Q 017673 238 LMVFELVKNSLRAVEERYMD----S--DKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARN-PLDEN 310 (368)
Q Consensus 238 ~vl~nLl~NAi~~~~~~~~~----~--~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~-~~~~~ 310 (368)
.++.+||+||++|....... . ...++.+.|.+..+++...|.|.|||.||+++++...|..+.+.... ... .
T Consensus 29 ~~lrELI~NA~DA~a~~~~~~~~~~~~~~~~~~i~I~i~~~~~~~~i~I~DnG~GMs~edl~~~l~~ia~S~~~~f~~-k 107 (220)
T 2wer_A 29 IFLREIVSNASDALDKIRYKSLSDPKQLETEPDLFIRITPKPEQKVLEIRDSGIGMTKAELINNLGTIAKSGTKAFME-A 107 (220)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCGGGGGGCCCCCEEEEEEGGGTEEEEEECSCCCCHHHHHHHTTTSCCTTHHHHHH-H
T ss_pred HHHHHHHHhHHHHHHHHHhhcccCchhccCCCcEEEEEEECCCCCEEEEEEcCCCCCHHHHHHHHHhHhcccchhHHH-H
Confidence 58999999999998741100 0 00024555555444556689999999999999987777554322100 000 0
Q ss_pred cccccCCCCCCccccChHHHHHHHH------H------------hCCeEEEEec-----CCCceEEEEEeCCC
Q 017673 311 TDLAADKGTMAGYGYGLPISRLYAR------Y------------FGGDLQIISM-----EGYGTDAYLHLSRL 360 (368)
Q Consensus 311 ~~~~~~~~~~~g~GlGL~i~k~iv~------~------------~gG~i~v~s~-----~g~Gt~f~i~lP~~ 360 (368)
..-+......+..|+|++.+..+++ . .+|.+.+... .+.||+++|.|+..
T Consensus 108 ~~~~~~~~~iG~fGiG~~s~~~~~~~v~v~S~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~GT~I~l~Lk~~ 180 (220)
T 2wer_A 108 LSAGADVSMIGQFGVGFYSLFLVADRVQVISKSNDDEQYIWESNAGGSFTVTLDEVNERIGRGTILRLFLKDD 180 (220)
T ss_dssp HTTTCCGGGGGGGTCGGGGGGGTEEEEEEEEECTTSCCEEEEECSSSEEEEEECSSSCCCSSEEEEEEEECTT
T ss_pred hhccCCcccCCccchhHHHhhhcCCeeEEEEecCCCceeEEEeCCCCceEeecccCCCCCCCCeEEEEEECcc
Confidence 0000011123346888876654432 0 1244555432 35699999998753
No 36
>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A* 1u0y_A* 1yt2_A*
Probab=98.26 E-value=8.9e-08 Score=84.59 Aligned_cols=122 Identities=21% Similarity=0.269 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHHHHHhhc----CC--CCCCCCEEEEEEeCCCeEEEEEeeeCCCCCCCCcccccccc-cccCCCCCCcc
Q 017673 238 LMVFELVKNSLRAVEERYM----DS--DKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYL-YSTARNPLDEN 310 (368)
Q Consensus 238 ~vl~nLl~NAi~~~~~~~~----~~--~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f-~~~~~~~~~~~ 310 (368)
.+|.+||+||++|...... +. ...++.+.|.+..+.+...|+|.|||.||+.+.+...|... +++.......-
T Consensus 31 ifLrELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~i~~d~~~~~l~I~DnGiGMt~edl~~~l~tia~Sgtk~F~~kl 110 (269)
T 1qy5_A 31 IFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCDKEKNLLHVTDTGVGMTREELVKNLGTIAKSGTSEFLNKM 110 (269)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCTTTTTTCCCCCEEEEEETTTTEEEEEECSCCCCHHHHHHHHHSCCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhhccCchhccCCCceEEEEEEcCCceEEEEEECCCCCCHHHHHHHhhhhcccccHHHHHhh
Confidence 3789999999999863110 00 00123445555445555689999999999999876555332 22110000000
Q ss_pred ccc----ccCCCCCCccccChHHHHHHHH-----------------HhCCeEEEEec-----CCCceEEEEEeCC
Q 017673 311 TDL----AADKGTMAGYGYGLPISRLYAR-----------------YFGGDLQIISM-----EGYGTDAYLHLSR 359 (368)
Q Consensus 311 ~~~----~~~~~~~~g~GlGL~i~k~iv~-----------------~~gG~i~v~s~-----~g~Gt~f~i~lP~ 359 (368)
... +......+..|+|++.+..+++ ..||.+.+... .+.||++++.|+.
T Consensus 111 ~~~~~~~~~d~~~IG~fGvGfySaf~va~~v~V~Sk~~~~~~~~w~s~gg~~~i~~~~~~~~~~~GT~I~L~Lk~ 185 (269)
T 1qy5_A 111 TEAQEDGQSTSELIGQFGVGFYSAFLVADKVIVTSKHNNDTQHIWESDSNEFSVIADPRGNTLGRGTTITLVLKE 185 (269)
T ss_dssp HHHHHHTCCCHHHHHHTTCGGGGGGGTEEEEEEEEECTTSCCEEEEECSSCEEEEECTTCSCSSSEEEEEEEECG
T ss_pred hhcccccccchhhcCCccccHHHHhhccceEEEEEEecCCcEEEEEEeCCEEEEEeccCCCcCCCCeEEEEEEcc
Confidence 000 0000112357888877765442 11245666543 3679999999874
No 37
>1yc1_A HSP 86, heat shock protein HSP 90-alpha; cell-cycle, cancer, drug design, cell cycle; HET: 4BC; 1.70A {Homo sapiens} SCOP: d.122.1.1 PDB: 1yc3_A* 1yc4_A*
Probab=98.23 E-value=6.9e-07 Score=78.77 Aligned_cols=122 Identities=22% Similarity=0.330 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHHHHHhhcC----C--CCCCCCEEEEEEeCCCeEEEEEeeeCCCCCCCCcccccccccccCCCCCCccc
Q 017673 238 LMVFELVKNSLRAVEERYMD----S--DKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENT 311 (368)
Q Consensus 238 ~vl~nLl~NAi~~~~~~~~~----~--~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~ 311 (368)
.++.+||+||++|....... . ....+.|.|.+..+.+.-.|.|.|||.||+++++...|..+.+.....-....
T Consensus 71 ~~lrELI~NA~DA~ak~r~~~l~~~~~~~~~~~i~I~i~~d~~~~~I~I~DnG~GMs~edL~~~l~~ia~S~~~~f~~~l 150 (264)
T 1yc1_A 71 IFLRELISNSSDALDKIRYETLTDPSKLDSGKELHINLIPNKQDRTLTIVDTGIGMTKADLINNLGTIAKSGTKAFMEAL 150 (264)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCGGGGGGCCCCCEEEEEETTTTEEEEEECSCCCCHHHHHHHHHSCTTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhhhhccCccccCCCCeEEEEEEECCCeeEEEEEECCcCCCHHHHHHHHHhhccccchhhhhhh
Confidence 47899999999998721000 0 00024555665544445579999999999999887666544322210000000
Q ss_pred ccccCCCCCCccccChHHHHHHHHH------------------hCCeEEEEec----CCCceEEEEEeCC
Q 017673 312 DLAADKGTMAGYGYGLPISRLYARY------------------FGGDLQIISM----EGYGTDAYLHLSR 359 (368)
Q Consensus 312 ~~~~~~~~~~g~GlGL~i~k~iv~~------------------~gG~i~v~s~----~g~Gt~f~i~lP~ 359 (368)
..+......+..|+|++.+..+++. .+|.+.+... .+.||+++|.|..
T Consensus 151 ~~~~d~~~iG~fGiGf~S~f~va~~v~V~Sr~~~~~~~~w~~~~~~~~~i~~~~~~~~~~GT~I~l~Lk~ 220 (264)
T 1yc1_A 151 QAGADISMIGQFGVGFYSAYLVAEKVTVITKHNDDEQYAWESSAGGSFTVRTDTGEPMGRGTKVILHLKE 220 (264)
T ss_dssp HTTCCGGGGGGGTCGGGGHHHHEEEEEEEEECTTSCCEEEEECSTTEEEEEECCSSCCSSEEEEEEEECG
T ss_pred ccccchhhcCCCCCCccccccCCCEEEEEEecCCCceEEEEEcCCceEEEeecCCCCCCCCeEEEEEECC
Confidence 0000111234578998877665531 1244555542 3568988888753
No 38
>2ior_A Chaperone protein HTPG; heat shock protein, HSP90; HET: ADP; 1.65A {Escherichia coli}
Probab=98.08 E-value=3.3e-07 Score=79.75 Aligned_cols=62 Identities=18% Similarity=0.285 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHhhcC--------CCCCCCCEEEEEEeCCCeEEEEEeeeCCCCCCCCcccccccccc
Q 017673 238 LMVFELVKNSLRAVEERYMD--------SDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYS 301 (368)
Q Consensus 238 ~vl~nLl~NAi~~~~~~~~~--------~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~ 301 (368)
.++.+||+||++|....... .......|.|.+. .+...|.|.|||.||+++++...|..+.+
T Consensus 50 ~~lrELI~NA~DA~~~~r~~~~~~~~~~~~~~~~~I~i~~~--~~~~~i~I~DnG~GMs~edl~~~~~~ia~ 119 (235)
T 2ior_A 50 IFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFD--KDKRTLTISDNGVGMTRDEVIDHLGTIAK 119 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSCGGGGTTCCCCCEEEEEE--TTTTEEEEEECSSCCCHHHHHHHHTTCCC
T ss_pred HHHHHHHhCHHHHHHHHHhhhccCccccCCCceEEEEEEEc--CCceEEEEEECCCCCCHHHHHHHHHHHcc
Confidence 58999999999998521100 0000134555543 33346999999999999998877755433
No 39
>1s16_A Topoisomerase IV subunit B; two-domain protein complexed with ADPNP; HET: ANP; 2.10A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=97.96 E-value=1.1e-05 Score=75.24 Aligned_cols=84 Identities=17% Similarity=0.219 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEEEEeCCCeEEEEEeeeCCCCCCCC--------cccccccccccCCCCCC
Q 017673 237 HLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSG--------LPKIFTYLYSTARNPLD 308 (368)
Q Consensus 237 ~~vl~nLl~NAi~~~~~~~~~~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~--------~~~if~~f~~~~~~~~~ 308 (368)
..++.+++.||+++....+ .+.|.|.+..++ .|+|.|||.|||.+. ++.+|..++.+..-..
T Consensus 33 ~~lv~ElvdNsiD~a~~g~------a~~I~V~i~~~g---~I~V~DnG~GIp~~~~~~~~~~~~e~v~~~lhagsKf~~- 102 (390)
T 1s16_A 33 NHLGQEVIDNSVDEALAGH------AKRVDVILHADQ---SLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSN- 102 (390)
T ss_dssp HHHHHHHHHHHHHHHHTTC------CSEEEEEECTTS---CEEEEECSSCCCCSBCTTTCSBHHHHHHHCTTEESCSSS-
T ss_pred HHHHHHHHHHHHHHHhcCC------CCEEEEEEecCC---EEEEEECCCCcCcccccccCcchhhheeeeecccCCcCC-
Confidence 6677788888887765421 477888886554 799999999999987 4667888766532200
Q ss_pred cccccccCCCCCCccccChHHHHHHHH
Q 017673 309 ENTDLAADKGTMAGYGYGLPISRLYAR 335 (368)
Q Consensus 309 ~~~~~~~~~~~~~g~GlGL~i~k~iv~ 335 (368)
+....+.+=.|.||+.+..+.+
T Consensus 103 -----~~~~~sgGl~GvGls~vnalS~ 124 (390)
T 1s16_A 103 -----KNYQFSGGLHGVGISVVNALSK 124 (390)
T ss_dssp -----SSCSSCSCCSSCHHHHHHHTEE
T ss_pred -----CcccccCCccccchHHHHHhhc
Confidence 0011112228999999988764
No 40
>3t0h_A Heat shock protein HSP 90-alpha; chaperone, ATPase; 1.20A {Homo sapiens} SCOP: d.122.1.1 PDB: 3r4m_A 3t0z_A* 3t10_A* 3t1k_A* 3t2s_A* 1uyl_A 1uy7_A* 1uy8_A* 1uy9_A* 1uyc_A* 1uyd_A* 1uye_A* 1uyf_A* 1uyg_A* 1uyh_A* 1uyk_A* 1uy6_A 2cdd_A* 2uwd_A* 2vci_A* ...
Probab=97.92 E-value=2.5e-06 Score=73.49 Aligned_cols=62 Identities=21% Similarity=0.309 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHhhc----CC--CCCCCCEEEEEEeCCCeEEEEEeeeCCCCCCCCcccccccc
Q 017673 238 LMVFELVKNSLRAVEERYM----DS--DKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYL 299 (368)
Q Consensus 238 ~vl~nLl~NAi~~~~~~~~----~~--~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f 299 (368)
.++.+||+||++|...... .. ...++.+.|.+..+.+.-.|+|.|||.||+++++...|...
T Consensus 35 ~~lrELi~NA~DA~~k~r~~~~~~~~~~~~~~~i~I~I~~d~~~~~i~V~DnG~GMs~edl~~~l~~i 102 (228)
T 3t0h_A 35 IFLRELISNSSDALDKIRYESLTDPSKLDSGKELHINLIPNKQDRTLTIVDTGIGMTKADLINNLGTI 102 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCGGGGTTCCCCCEEEEEETTTTEEEEEECSCCCCHHHHHTGGGSC
T ss_pred HHHHHHHHCHHHHHHHHHhhhccCcccccCCCceEEEEEEeCCeeEEEEEeCCCCCCHHHHHHHHHhh
Confidence 4689999999999864210 00 00123455655545556689999999999999887666544
No 41
>2gqp_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, ligand, NECA, NPCA, adenosine; HET: PA7 PG4 1PE; 1.50A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1tc0_A* 1tbw_A* 1u0z_A* 1u2o_A* 1ysz_A* 1yt0_A* 1yt1_A* 2exl_A* 2fyp_A* 2gfd_A* 1tc6_A* 2h8m_A* 2hch_A* 2hg1_A* 3o2f_A* 2esa_A*
Probab=97.90 E-value=2.7e-06 Score=73.94 Aligned_cols=60 Identities=23% Similarity=0.362 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHhhc----CC----CCCCCCEEEEEEeCCCeEEEEEeeeCCCCCCCCcccccccc
Q 017673 238 LMVFELVKNSLRAVEERYM----DS----DKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYL 299 (368)
Q Consensus 238 ~vl~nLl~NAi~~~~~~~~----~~----~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f 299 (368)
.++.+||+||++|...... +. ......|.|.. +.+.-.|.|.|||.||+++++...|...
T Consensus 35 ~~lrELI~NA~DA~ak~~~~~~~~~~~~~~~~~~~I~i~~--d~~~~~i~I~DnG~GMt~edl~~~l~~i 102 (236)
T 2gqp_A 35 IFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKC--DKEKNLLHVTDTGVGMTREELVKNLGTI 102 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCTTTTTTCCCCCEEEEE--ETTTTEEEEEECSCCCCHHHHHHHHHCC
T ss_pred HHHHHHHHhHHHhhhhhhhhcccCcccccCCCceEEEEEE--cCCCCEEEEEECCcCCCHHHHHHHHhhh
Confidence 5789999999999863110 00 00123455554 3334579999999999999887766544
No 42
>1ei1_A DNA gyrase B, GYRB; ATPase domain, dimer, isomerase; HET: DNA ANP; 2.30A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=97.89 E-value=2.7e-05 Score=72.59 Aligned_cols=86 Identities=26% Similarity=0.346 Sum_probs=59.0
Q ss_pred hHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEEEEeCCCeEEEEEeeeCCCCCCCCccc--------ccccccccCCCC
Q 017673 235 HLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPK--------IFTYLYSTARNP 306 (368)
Q Consensus 235 ~l~~vl~nLl~NAi~~~~~~~~~~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~--------if~~f~~~~~~~ 306 (368)
-+..++.++++||+++....+ .+.|.|.+..++ .|+|.|||.|||.+..+. +|..++++..-.
T Consensus 34 gl~~lv~ElvdNsiDea~~g~------a~~I~V~i~~~g---~I~V~DnG~GIp~~~~~~~~~~~~elv~~~lhagsKf~ 104 (391)
T 1ei1_A 34 GLHHMVFEVVDNAIDEALAGH------CKEIIVTIHADN---SVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFD 104 (391)
T ss_dssp HHHHHHHHHHHHHHHHHHTTC------CCEEEEEECTTS---CEEEEECSSCCCCSBCTTTSSBHHHHHHHSTTEESCSS
T ss_pred CHHHHHHHHHHhHHHHHhcCC------CCEEEEEEeCCC---EEEEEECCCCcccCcccccCcchHHHhheeccccCCcC
Confidence 689999999999999876522 467888886654 899999999999987443 666555442210
Q ss_pred CCcccccccCCCCCCccccChHHHHHHHH
Q 017673 307 LDENTDLAADKGTMAGYGYGLPISRLYAR 335 (368)
Q Consensus 307 ~~~~~~~~~~~~~~~g~GlGL~i~k~iv~ 335 (368)
. +....+.+=.|.||+.+..+.+
T Consensus 105 ~------~~~~vSgGl~GvGls~vnalS~ 127 (391)
T 1ei1_A 105 D------NSYKVSGGLHGVGVSVVNALSQ 127 (391)
T ss_dssp S------SSCSSCSCCSSCHHHHHHHTEE
T ss_pred C------CcccccCCccccchHHHHHhcC
Confidence 0 0011122227999999887764
No 43
>3o0i_A HSP90AA1 protein; HSP90 heat-shock proteins, chaperone-inhibitor complex; HET: P54; 1.47A {Homo sapiens} PDB: 2fwz_A* 2fwy_A* 2h55_A*
Probab=97.79 E-value=3.2e-06 Score=73.68 Aligned_cols=60 Identities=22% Similarity=0.314 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHhhc----CC--CCCCCCEEEEEEeCCCeEEEEEeeeCCCCCCCCcccccc
Q 017673 238 LMVFELVKNSLRAVEERYM----DS--DKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFT 297 (368)
Q Consensus 238 ~vl~nLl~NAi~~~~~~~~----~~--~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~ 297 (368)
.++.+||+||++|...... +. ...++.+.|.+..+.+.-.|+|.|||.||+++++...|.
T Consensus 63 iflRELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~~~I~I~DnG~GMt~edl~~~l~ 128 (256)
T 3o0i_A 63 IFLRELISNSSDALDKIRYESLTDPSKLDSGKELHINLIPNKQDRTLTIVDTGIGMTKADLINNLG 128 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCGGGGTTCCCCCEEEEEETTTTEEEEEECSCCCCHHHHHTHHH
T ss_pred HHHHHHHhChHHHHHHHHHHhccCchhccCCCceEEEEEEcCCceEEEEecCCCCcCHHHHHHHHH
Confidence 5789999999999864110 00 001234555555455566899999999999998766553
No 44
>4duh_A DNA gyrase subunit B; structure-based drug design, antibacterial, DNA gyrase B, GY isomerase-isomerase inhibitor complex; HET: DNA RLI; 1.50A {Escherichia coli} PDB: 1aj6_A* 1kzn_A* 3g7e_A*
Probab=97.70 E-value=8.6e-05 Score=63.47 Aligned_cols=86 Identities=26% Similarity=0.335 Sum_probs=54.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEEEEeCCCeEEEEEeeeCCCCCCCCcc--------cccccccccCCC
Q 017673 234 SHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLP--------KIFTYLYSTARN 305 (368)
Q Consensus 234 ~~l~~vl~nLl~NAi~~~~~~~~~~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~--------~if~~f~~~~~~ 305 (368)
.-|..++.++++||+++....+ ...|.|.+..++ .|+|.|||.|||.+..+ -+|.....+..-
T Consensus 34 ~gl~~lv~ElvdNsiDea~~g~------~~~I~V~i~~~g---~i~V~DnGrGIp~~~~~~~~~~~~e~i~t~lhag~Kf 104 (220)
T 4duh_A 34 TGLHHMVFEVVDNAIDEALAGH------CKEIIVTIHADN---SVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKF 104 (220)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSC------CCEEEEEECTTS---CEEEEECSSCCCCSEETTTTEEHHHHHHHSTTCSSCC
T ss_pred ccHHHHHHHHHHHHHHHHhcCC------CCEEEEEEeCCC---cEEEEECCcCcccccccccCcchhhheeeecccCCCc
Confidence 4689999999999999977632 467888886543 69999999999998643 234322222111
Q ss_pred CCCcccccccCCCCCCccccChHHHHHHH
Q 017673 306 PLDENTDLAADKGTMAGYGYGLPISRLYA 334 (368)
Q Consensus 306 ~~~~~~~~~~~~~~~~g~GlGL~i~k~iv 334 (368)
. -+....+.+=.|.|++.+..+.
T Consensus 105 d------~~~yk~SgGlhGvG~svvNAlS 127 (220)
T 4duh_A 105 D------DNSYKVSGGLHGVGVSVVNALS 127 (220)
T ss_dssp C------TTC--------CCCHHHHHHTE
T ss_pred C------CCccccccCccceecchhcccc
Confidence 0 0001122233789999888765
No 45
>3peh_A Endoplasmin homolog; structural genomics, structural genomics consortium, SGC, HE protein, chaperone, ATP binding; HET: IBD; 2.75A {Plasmodium falciparum 3D7} PDB: 3pej_A*
Probab=97.62 E-value=1.6e-05 Score=69.98 Aligned_cols=57 Identities=21% Similarity=0.323 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHhhc----CC--CCCCCCEEEEEEeCCCeEEEEEeeeCCCCCCCCccc
Q 017673 238 LMVFELVKNSLRAVEERYM----DS--DKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPK 294 (368)
Q Consensus 238 ~vl~nLl~NAi~~~~~~~~----~~--~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~ 294 (368)
.+|.+||+||.+|...... +. ....+.+.|.+..+.+.-.|.|.|||.||+++++..
T Consensus 49 ifLRELIsNA~DA~~k~r~~~l~d~~~~~~~~~l~I~I~~d~~~~tLtI~DNGiGMt~edL~~ 111 (281)
T 3peh_A 49 VFLRELISNAADALEKIRFLSLSDESVLGEEKKLEIRISANKEKNILSITDTGIGMTKVDLIN 111 (281)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHTTCGGGGTTCCCCCEEEEEETTTTEEEEEECSCCCCHHHHHH
T ss_pred HHHHHHHhChHHHHHHHHHHhcCCchhccCCCceEEEEEEcCCCcEEEEEeCCCCCCHHHHHH
Confidence 4688999999999863110 00 000233444443344445789999999999988654
No 46
>1y4s_A Chaperone protein HTPG; HSP90, molecular chaperone, ATPase; HET: ADP; 2.90A {Escherichia coli} PDB: 1y4u_A
Probab=97.60 E-value=7.1e-05 Score=72.71 Aligned_cols=120 Identities=21% Similarity=0.283 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHHHHHhhc--------CCCCCCCCEEEEEEeCCCeEEEEEeeeCCCCCCCCccccccccc-ccCCCCCC
Q 017673 238 LMVFELVKNSLRAVEERYM--------DSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLY-STARNPLD 308 (368)
Q Consensus 238 ~vl~nLl~NAi~~~~~~~~--------~~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~-~~~~~~~~ 308 (368)
.++.+||+||++|...... ........|.|.+...+ -.|+|.|||.||+++++...|.... ++.....+
T Consensus 30 ifLrELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~--~~I~I~DnGiGMt~edl~~~l~tiA~Sg~~~f~e 107 (559)
T 1y4s_A 30 IFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDKDK--RTLTISDNGVGMTRDEVIDHLGTIAKSGTKSFLE 107 (559)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCGGGGCSCCCCCEEEEEETTT--TEEEEEECSSCCCHHHHHHHHSCCSCCCCCCTTC
T ss_pred HHHHHHHHHHHHHhHhHHHhhccCchhccCCCccEEEEEEeCCC--cEEEEEECCCCCCHHHHHHHHhhhcccccHHHHH
Confidence 5789999999999843110 00011246777664433 5899999999999998766554332 22111000
Q ss_pred ccccc-ccCCCCCCccccChHHHHHHHH-------Hh--------------CCeEEEEe--cCCCceEEEEEeCC
Q 017673 309 ENTDL-AADKGTMAGYGYGLPISRLYAR-------YF--------------GGDLQIIS--MEGYGTDAYLHLSR 359 (368)
Q Consensus 309 ~~~~~-~~~~~~~~g~GlGL~i~k~iv~-------~~--------------gG~i~v~s--~~g~Gt~f~i~lP~ 359 (368)
.-.+. .......+..|+|++-+..+++ .. ||.+.+.. ..+.||++++.|..
T Consensus 108 ~l~~~~~~~~~~iG~fGvGfyS~f~VadkV~V~Sr~~~~~~~~~~~w~s~g~~~~~i~~~~~~~~GT~I~L~Lk~ 182 (559)
T 1y4s_A 108 SLGSDQAKDSQLIGQFGVGFYSAFIVADKVTVRTRAAGEKPENGVFWESAGEGEYTVADITKEDRGTEITLHLRE 182 (559)
T ss_dssp C--------CCCCSSCCCSGGGHHHHEEEEEEEEECSSSCGGGEEEEEECSSSEEEEEEECCCSCEEEEEEEECT
T ss_pred HhhccccccccccCCCCcchhhhhhccCeEEEEEcCCCCCCCeeEEEEEeCCCeeEEeECCCCCCCeEEEEEEcc
Confidence 00000 0122334567899877766642 11 23444443 24679999999864
No 47
>3nmq_A Heat shock protein HSP 90-beta; ATPase, chaperone-chaperone inhibitor complex; HET: 7PP; 2.20A {Homo sapiens} SCOP: d.122.1.1
Probab=97.59 E-value=9.8e-06 Score=69.85 Aligned_cols=57 Identities=19% Similarity=0.329 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHhhc----CC--CCCCCCEEEEEEeCCCeEEEEEeeeCCCCCCCCccc
Q 017673 238 LMVFELVKNSLRAVEERYM----DS--DKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPK 294 (368)
Q Consensus 238 ~vl~nLl~NAi~~~~~~~~----~~--~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~ 294 (368)
.++.+||+||.+|...... +. ...++.+.|.+..+.+...|.|.|||.||+++++..
T Consensus 42 ifLRELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~~~L~I~DnGiGMt~edL~~ 104 (239)
T 3nmq_A 42 IFLRELISNASDALDKIRYESLTDPSKLDSGKELKIDIIPNPQERTLTLVDTGIGMTKADLIN 104 (239)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCGGGGTTCCCCCEEEEEETTTTEEEEEECSCCCCHHHHHT
T ss_pred HHHHHHHhChHHHHHHHHHHhccCchhccCCCceEEEEEEeCCccEEEEEeCCCCCCHHHHHH
Confidence 4688999999999864210 00 001234445444444456799999999999988743
No 48
>2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae}
Probab=97.49 E-value=6.6e-05 Score=74.24 Aligned_cols=119 Identities=21% Similarity=0.267 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHHHHHhhcC--------CCCCCCCEEEEEEeCCCeEEEEEeeeCCCCCCCCcccccccc-cccCCCCCC
Q 017673 238 LMVFELVKNSLRAVEERYMD--------SDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYL-YSTARNPLD 308 (368)
Q Consensus 238 ~vl~nLl~NAi~~~~~~~~~--------~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f-~~~~~~~~~ 308 (368)
.++.+||+||++|....... .......|.|.+..+ .-.|+|.|||.||+.+++..-+... +++......
T Consensus 29 ifLRELIsNA~DA~~k~r~~~ltd~~~~~~~~~~~I~I~~d~~--~~~I~I~DnGiGMt~edl~~~l~tIA~Sgt~~f~~ 106 (677)
T 2cg9_A 29 IFLRELISNASDALDKIRYKSLSDPKQLETEPDLFIRITPKPE--QKVLEIRDSGIGMTKAELINNLGTIAKSGTKAFME 106 (677)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSSCTTTTTTCCCCCEEEEEEGG--GTEEEEEECSCCCCHHHHHGGGSSSSSCTTHHHHS
T ss_pred HHHHHHhhCHHHHHHHHHHHhccChhhccCCCCcEEEEEEeCC--CCEEEEEECCCCCCHHHHHHHHHhHhccccHHHHH
Confidence 37899999999998632110 001123566665433 3579999999999998876554332 221100000
Q ss_pred cccccccCCCCCCccccChHHHHHHHH------------------HhCCeEEEEe-----cCCCceEEEEEeCC
Q 017673 309 ENTDLAADKGTMAGYGYGLPISRLYAR------------------YFGGDLQIIS-----MEGYGTDAYLHLSR 359 (368)
Q Consensus 309 ~~~~~~~~~~~~~g~GlGL~i~k~iv~------------------~~gG~i~v~s-----~~g~Gt~f~i~lP~ 359 (368)
. ..-+......+..|+|.+-+-.+++ .-||...+.. ..+.||++++.|..
T Consensus 107 k-l~~~~d~~~IGqFGvGFySaf~vadkV~V~Sk~~~~~~~~W~s~g~~~~ti~~~~~~~~~~~GT~I~L~Lk~ 179 (677)
T 2cg9_A 107 A-LSAGADVSMIGQFGVGFYSLFLVADRVQVISKSNDDEQYIWESNAGGSFTVTLDEVNERIGRGTILRLFLKD 179 (677)
T ss_dssp C-CCSSCCCCCCCCTTCTTGGGGGTEEEEEEEEECTTSCEEEEEECSSSEEEEEECCSSCCCSSEEEEEEEECT
T ss_pred h-hhcccchhhcCCCCchhHHHhhcCcEEEEEEccCCCceEEEEEcCCceEEEeecCCCCCCCCCeEEEEEEcc
Confidence 0 0000012234556788765543321 0134556655 23679999998865
No 49
>3cwv_A DNA gyrase, B subunit, truncated; structural genomics, unknown function, B-subunit binding, isomerase, nucleotide-binding, topoisomerase; HET: DNA; 1.95A {Myxococcus xanthus}
Probab=97.48 E-value=0.00016 Score=66.91 Aligned_cols=53 Identities=11% Similarity=0.102 Sum_probs=42.4
Q ss_pred cchhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEEEEeCCCeEEEEEeeeCCCCCCCCccccc
Q 017673 232 VPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIF 296 (368)
Q Consensus 232 d~~~l~~vl~nLl~NAi~~~~~~~~~~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if 296 (368)
++.-+..++.+|++||+++....+ ...|.|.+..++ .|+|.|||.|||. +-+|
T Consensus 27 ~~~gl~~~v~ElvdNsiDe~~~g~------a~~I~V~i~~~g---~I~V~DnGrGIp~---e~v~ 79 (369)
T 3cwv_A 27 GEYGLHHLVYFLLDVAYEEARRGE------CRDVVLEVGGDG---SIALFCTSRTVTA---ENLV 79 (369)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHTTC------CSEEEEEECTTS---CEEEEEEESSCCH---HHHH
T ss_pred CCchHHHHHHHHHhhhHhHHhhCC------CCEEEEEEeCCC---EEEEEECCCCcCH---hHee
Confidence 445799999999999999875522 467888886554 7999999999998 5556
No 50
>4emv_A DNA topoisomerase IV, B subunit; protein-inhibitor complex, ATP binding, structure-based drug antimicrobial, virtual screen; HET: DNA 0R9; 1.70A {Streptococcus pneumoniae GA47373} PDB: 4em7_A*
Probab=97.46 E-value=0.00013 Score=62.52 Aligned_cols=87 Identities=22% Similarity=0.333 Sum_probs=54.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEEEEeCCCeEEEEEeeeCCCCCCCC-------cccccccccccCCC
Q 017673 233 PSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSG-------LPKIFTYLYSTARN 305 (368)
Q Consensus 233 ~~~l~~vl~nLl~NAi~~~~~~~~~~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~-------~~~if~~f~~~~~~ 305 (368)
+.-|..++.+++.||++.....+ ...|.|.+..++ .|+|.|||.|||.+. .+-+|....++..-
T Consensus 38 ~~gl~~~v~Eiv~NaiD~~~~g~------~~~I~V~i~~~g---~i~V~DnG~GIp~~~h~~~~~~~e~v~t~lhag~Kf 108 (226)
T 4emv_A 38 GAGLHHLVWEIVDNAVDEALSGF------GDRIDVTINKDG---SLTVQDHGRGMPTGMHAMGIPTVEVIFTILHAGGKF 108 (226)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTC------CSEEEEEECTTS---CEEEEECSSCCCCSBCGGGCBHHHHHHHCBC-----
T ss_pred cccHHHHHHHHHHHHHHHHhcCC------CcEEEEEEeCCC---eEEEEEcCCCccccccccCceehheeEEeecccCcc
Confidence 45689999999999999876532 467888876543 699999999999987 44455433322211
Q ss_pred CCCcccccccCCCCCCccccChHHHHHHH
Q 017673 306 PLDENTDLAADKGTMAGYGYGLPISRLYA 334 (368)
Q Consensus 306 ~~~~~~~~~~~~~~~~g~GlGL~i~k~iv 334 (368)
. -+....+.+=.|.|++.+..+.
T Consensus 109 d------~~~yk~SgGlhGvG~svvNALS 131 (226)
T 4emv_A 109 G------QGGYKTSGGLHGVGSSVVNALS 131 (226)
T ss_dssp ---------------CGGGCCHHHHHHTE
T ss_pred C------ccceEeccccccccchhhhhcc
Confidence 0 0001122334789999887765
No 51
>1zxm_A TOPO IIA ATPase, DNA topoisomerase II, alpha isozyme; GHKL nucleotide-binding fold; HET: DNA ANP; 1.87A {Homo sapiens} PDB: 1zxn_A*
Probab=97.35 E-value=0.00033 Score=65.35 Aligned_cols=86 Identities=21% Similarity=0.281 Sum_probs=56.7
Q ss_pred hhHHHHHHHHHHHHHHHHH-HhhcCCCCCCCCEEEEEEeCCCeEEEEEeeeCCCCCCCCcc--------cccccccccCC
Q 017673 234 SHLHLMVFELVKNSLRAVE-ERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLP--------KIFTYLYSTAR 304 (368)
Q Consensus 234 ~~l~~vl~nLl~NAi~~~~-~~~~~~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~--------~if~~f~~~~~ 304 (368)
.-|..++.++++||+++.. ..+ .+.|.|.+..+++ .|+|.|||.|||.+..+ -+|.....+..
T Consensus 51 ~GL~~lv~EivdNsiDe~~~~g~------~~~I~V~i~~~~~--~I~V~DnGrGIPv~~h~~~~~~~~e~v~t~lhagsK 122 (400)
T 1zxm_A 51 PGLYKIFDEILVNAADNKQRDPK------MSCIRVTIDPENN--LISIWNNGKGIPVVEHKVEKMYVPALIFGQLLTSSN 122 (400)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTT------CCEEEEEEETTTT--EEEEEEESSCCCCSEETTTTEEHHHHHHHSSSEESC
T ss_pred chHHHHHHHHHhhHHhHHhhcCC------CceEEEEEECCCC--EEEEEECCCcccCccccccCccchhheeeeecccCC
Confidence 4699999999999999973 222 4789999877543 79999999999988633 24442222211
Q ss_pred CCCCcccccccCCCCCCccccChHHHHHH
Q 017673 305 NPLDENTDLAADKGTMAGYGYGLPISRLY 333 (368)
Q Consensus 305 ~~~~~~~~~~~~~~~~~g~GlGL~i~k~i 333 (368)
-. -+...-+.+=.|.|++.+..+
T Consensus 123 f~------~~~ykvSgGlhGvGlsvVnAl 145 (400)
T 1zxm_A 123 YD------DDEKKVTGGRNGYGAKLCNIF 145 (400)
T ss_dssp CC------GGGCCCCSCCSSCHHHHHHHT
T ss_pred CC------CCcccccCCccccceeeeEEe
Confidence 10 000112233478999988876
No 52
>2o1u_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, AMP-PNP, GP96; HET: ANP; 2.40A {Canis lupus familiaris} PDB: 2o1v_A* 2o1w_A 2o1t_A
Probab=97.34 E-value=5.1e-05 Score=74.95 Aligned_cols=121 Identities=21% Similarity=0.272 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHHHHHhhcCC--------CCCCCCEEEEEEeCCCeEEEEEeeeCCCCCCCCcccccccc-cccCCCCCC
Q 017673 238 LMVFELVKNSLRAVEERYMDS--------DKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYL-YSTARNPLD 308 (368)
Q Consensus 238 ~vl~nLl~NAi~~~~~~~~~~--------~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f-~~~~~~~~~ 308 (368)
.++.+||+||++|........ ......|.|.+..+ .-.|+|.|||.||+.+++..-|... .++......
T Consensus 48 ifLRELIsNA~DA~dk~r~~~l~~~~~~~~a~~~~I~I~~d~~--~~~I~I~DnGiGMt~edl~~~l~tIA~SGtk~f~~ 125 (666)
T 2o1u_A 48 IFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCDKE--KNLLHVTDTGVGMTREELVKNLGTIAKSGTSEFLN 125 (666)
T ss_dssp THHHHHHHHHHHHHHHHHHHTTSCTTSSSSCCCCCEEEEEETT--TTEEEEEECSCCCCHHHHHHHTTC-----------
T ss_pred HHHHHHHhhHHHHHHHHHHHhccCchhccCCCccEEEEEEeCC--CCEEEEEECCCCCCHHHHHHHHhhhcccccHHHHH
Confidence 479999999999985321100 01124566655433 3579999999999998876555332 121110000
Q ss_pred ccccc---c-cCCCCCCccccChHHHHHHH-----------------HHhCCeEEEEec-----CCCceEEEEEeCCC
Q 017673 309 ENTDL---A-ADKGTMAGYGYGLPISRLYA-----------------RYFGGDLQIISM-----EGYGTDAYLHLSRL 360 (368)
Q Consensus 309 ~~~~~---~-~~~~~~~g~GlGL~i~k~iv-----------------~~~gG~i~v~s~-----~g~Gt~f~i~lP~~ 360 (368)
.-.+. + ......+..|+|.+-+-.++ +.-||.+.+... .+.||++++.|...
T Consensus 126 kl~~~~~~~~~d~~~IGqFGvGfySaf~vAdkV~V~Sr~~~~~~~~W~s~gg~~ti~~~~~~~~~~~GT~I~L~Lk~d 203 (666)
T 2o1u_A 126 KMTEAQEDGQSTSELIGQFGVGFYSAFLVADKVIVTSKHNNDTQHIWESDSNEFSVIADPRGNTLGRGTTITLVLKEE 203 (666)
T ss_dssp --------------------CTTGGGGGTEEEEEEEEECTTSCCEEEEESSSCCEEEECTTCCSSSSEEEEEEEECTT
T ss_pred HhhhcccccccchhhccCCCcHHHhHHHhcCEEEEEEeeCCCceEEEEEeCCeEEEEecccCCCCCCCeEEEEEEccc
Confidence 00000 0 01112345677876554332 111356666544 36799999998753
No 53
>3fv5_A DNA topoisomerase 4 subunit B; topoisomerase IV B subunit complex, antibiotic resistance, ATP-binding, nucleotide-binding; HET: DNA 1EU; 1.80A {Escherichia coli} PDB: 1s14_A*
Probab=97.30 E-value=0.00026 Score=59.77 Aligned_cols=48 Identities=23% Similarity=0.371 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEEEEeCCCeEEEEEeeeCCCCCCCCcc
Q 017673 237 HLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLP 293 (368)
Q Consensus 237 ~~vl~nLl~NAi~~~~~~~~~~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~ 293 (368)
..++.+|+.||+++....+ ...|.|.+..++ .|+|.|||.|||.+..+
T Consensus 19 ~~~v~Elv~NsiDa~~~g~------a~~I~V~i~~~g---~i~V~DnG~GIp~~~~~ 66 (201)
T 3fv5_A 19 NHLGQEVIDNSVDEALAGH------AKRVDVILHADQ---SLEVIDDGRGMPVDIHP 66 (201)
T ss_dssp HHHHHHHHHHHHHHHHTTC------CSEEEEEECTTS---CEEEEECSSCCCCSBCT
T ss_pred hhhhHHHHHHHHHHHhcCC------CcEEEEEEeCCC---EEEEEECCCCcCccccc
Confidence 7899999999999976522 367888885433 79999999999998753
No 54
>3ttz_A DNA gyrase subunit B; protein-inhibitor complex, ATP-binding, structure-based drug antimicrobial, isomerase-isomerase inhibitor complex; HET: DNA 07N; 1.63A {Staphylococcus aureus} PDB: 3u2d_A* 3u2k_A* 3g75_A* 3g7b_A*
Probab=97.27 E-value=0.00042 Score=58.25 Aligned_cols=51 Identities=35% Similarity=0.539 Sum_probs=41.2
Q ss_pred cchhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEEEEeCCCeEEEEEeeeCCCCCCCC
Q 017673 232 VPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSG 291 (368)
Q Consensus 232 d~~~l~~vl~nLl~NAi~~~~~~~~~~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~ 291 (368)
++.-+..++.+++.||++.....+ ...|.|.+..++ .|+|.|||.|||.+.
T Consensus 28 ~~~gl~~~v~Elv~NsiD~~~ag~------~~~I~V~i~~~g---~i~V~DnG~Gip~~~ 78 (198)
T 3ttz_A 28 SERGLHHLVWEIVDNSIDEALAGY------ANQIEVVIEKDN---WIKVTDNGRGIPVDI 78 (198)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHTTS------CCEEEEEEEGGG---EEEEEECSSCCCCSB
T ss_pred CCcchHHHHHHHHHHHHhHHhcCC------CcEEEEEEeCCC---eEEEEECCCCccccc
Confidence 345789999999999999865532 478898887654 899999999999873
No 55
>2ioq_A Chaperone protein HTPG; heat shock protein, HSP90; 3.50A {Escherichia coli} PDB: 2iop_A
Probab=97.22 E-value=6e-05 Score=74.17 Aligned_cols=120 Identities=21% Similarity=0.304 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHHHHHhhc----C----CCCCCCCEEEEEEeCCCeEEEEEeeeCCCCCCCCccccccccc-ccCCCCCC
Q 017673 238 LMVFELVKNSLRAVEERYM----D----SDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLY-STARNPLD 308 (368)
Q Consensus 238 ~vl~nLl~NAi~~~~~~~~----~----~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~-~~~~~~~~ 308 (368)
.++.+||+||++|...... + .......|.|.+... .-.|+|.|||.||+.+++...|.... ++.....+
T Consensus 30 ifLrELIsNA~DA~~k~r~~~l~~~~~~~~a~~~~I~I~~d~~--~~~I~I~DnGiGMt~edl~~~l~tiA~Sg~~~f~~ 107 (624)
T 2ioq_A 30 IFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDKD--KRTLTISDNGVGMTRDEVIDHLGTIAKSGTKSFLE 107 (624)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSTTTTTTCCCCCEEEEEETT--TTEEEEEECSCCCCHHHHHHHHHHHCC--------
T ss_pred HHHHHHHHHHHHhhhhhHHhhccCcccccCCCCcEEEEEEeCC--CcEEEEEECCCCCCHHHHHHHHHhhcccccHHHHH
Confidence 5789999999999843110 0 001124566665433 35799999999999998766553322 22110000
Q ss_pred ccccc-ccCCCCCCccccChHHHHHHHH-------Hh--------------CCeEEEEe--cCCCceEEEEEeCC
Q 017673 309 ENTDL-AADKGTMAGYGYGLPISRLYAR-------YF--------------GGDLQIIS--MEGYGTDAYLHLSR 359 (368)
Q Consensus 309 ~~~~~-~~~~~~~~g~GlGL~i~k~iv~-------~~--------------gG~i~v~s--~~g~Gt~f~i~lP~ 359 (368)
.-.+. .......+..|+|++-+..+++ .. ||.+.+.. ..+.||++++.|..
T Consensus 108 ~l~~~~~~~~~~iG~fGvGfyS~f~VadkV~V~Sr~~~~~~~~~~~w~s~g~~~~~i~~~~~~~~GT~I~L~Lk~ 182 (624)
T 2ioq_A 108 SLGSDQAKDSQLIGQFGVGFYSAFIVADKVTVRTRAAGEKPENGVFWESAGEGEYTVADITKEDRGTEITLHLRE 182 (624)
T ss_dssp -------CCTTHHHHHHHHHHHHHHHEEEEEEEEECTTSCGGGEEEEEECSSSCCEEEEECCSSSEEEEEEEECT
T ss_pred HhcccccccccccCCCCccHHHHHhcCCeEEEEECCCCCCCCeeEEEEEeCCCeEEEEECCCCCCCeEEEEEEcc
Confidence 00000 0011122346888887776652 11 23334432 24679999999864
No 56
>1pvg_A DNA topoisomerase II; GHKL ATPase domain; HET: DNA ANP; 1.80A {Saccharomyces cerevisiae} SCOP: d.14.1.3 d.122.1.2 PDB: 1qzr_A*
Probab=97.16 E-value=0.001 Score=62.35 Aligned_cols=87 Identities=24% Similarity=0.308 Sum_probs=57.6
Q ss_pred hHHHHHHHHHHHHHHHHHH-hhcCCCCCCCCEEEEEEeCCCeEEEEEeeeCCCCCCCCccc--------ccccccccCCC
Q 017673 235 HLHLMVFELVKNSLRAVEE-RYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPK--------IFTYLYSTARN 305 (368)
Q Consensus 235 ~l~~vl~nLl~NAi~~~~~-~~~~~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~--------if~~f~~~~~~ 305 (368)
-|..++.++|.||++.... .+ ...|.|.+..+++ .|+|.|||.|||.+..+. +|.....+..-
T Consensus 64 GL~~lv~EivdNaiDe~~~~g~------~~~I~V~i~~d~~--sI~V~DnGrGIPv~~h~~~g~~~~E~v~t~LhaGgKf 135 (418)
T 1pvg_A 64 GLFKIFDEILVNAADNKVRDPS------MKRIDVNIHAEEH--TIEVKNDGKGIPIEIHNKENIYIPEMIFGHLLTSSNY 135 (418)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTT------CCEEEEEEETTTT--EEEEEEESSCCCCSBCTTTCSBHHHHHHHSSSEESCC
T ss_pred hHHHHHHHHHhCHHHHHHhcCC------CCEEEEEEECCCC--EEEEEECCCcccCcccccCCcccceEEEEEEeccccc
Confidence 5899999999999998743 22 5789999887653 689999999999886443 44433332211
Q ss_pred CCCcccccccCCCCCCccccChHHHHHHHH
Q 017673 306 PLDENTDLAADKGTMAGYGYGLPISRLYAR 335 (368)
Q Consensus 306 ~~~~~~~~~~~~~~~~g~GlGL~i~k~iv~ 335 (368)
+-+...-+.+-.|.|.+.|..+-+
T Consensus 136 ------d~~~ykvSGGLhGVG~SvVNALS~ 159 (418)
T 1pvg_A 136 ------DDDEKKVTGGRNGYGAKLCNIFST 159 (418)
T ss_dssp ------CTTSCCCCSCCSSCHHHHHHHTEE
T ss_pred ------CCCceeccCCccceeeeeeeeccc
Confidence 000112223347999998876543
No 57
>3ied_A Heat shock protein; HSP90, chaperone, structural genomics, structura genomics consortium, SGC, stress response; HET: AN2; 2.01A {Plasmodium falciparum}
Probab=97.15 E-value=6e-05 Score=65.07 Aligned_cols=31 Identities=29% Similarity=0.390 Sum_probs=22.7
Q ss_pred CEEEEEEeCCCeEEEEEeeeCCCCCCCCccccc
Q 017673 264 PIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIF 296 (368)
Q Consensus 264 ~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if 296 (368)
.|.|.. +.+.-.|+|.|||.||+.+++...+
T Consensus 120 ~I~I~~--Dk~~~tLtI~DNGiGMTkeeL~~~L 150 (272)
T 3ied_A 120 IIKIKP--DKEKKTLTITDNGIGMDKSELINNL 150 (272)
T ss_dssp CEEEEE--ETTTTEEEEEECSCCCCHHHHHHHT
T ss_pred EEEEEE--eCCCCEEEEEeCCCCCCHHHHHHHH
Confidence 455544 4444579999999999999877654
No 58
>3lnu_A Topoisomerase IV subunit B; PARE, ATP-binding, nucleotide-BI topoisomerase; 2.20A {Xanthomonas oryzae PV} PDB: 3lps_A*
Probab=96.94 E-value=0.00068 Score=63.12 Aligned_cols=48 Identities=25% Similarity=0.356 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEEEEeCCCeEEEEEeeeCCCCCCCCcc
Q 017673 237 HLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLP 293 (368)
Q Consensus 237 ~~vl~nLl~NAi~~~~~~~~~~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~ 293 (368)
..++.++++||++.....+ ...|.|.+..++ .|+|.|||.|||.+..+
T Consensus 52 ~hlv~EivdNsiDea~ag~------~~~I~V~i~~dg---sI~V~DnGrGIPv~~h~ 99 (408)
T 3lnu_A 52 NHLAQEVIDNSVDEALAGH------AKQIEVTLYKDG---SCEVSDDGRGMPVDIHP 99 (408)
T ss_dssp HHHHHHHHHHHHHHHHTTS------CCEEEEEECTTS---CEEEEECSSCCCCSBCT
T ss_pred chhhHHHHHHHHHHhhcCC------CceEEEEEeCCC---eEEEEEcCCCCCccccc
Confidence 7889999999998876533 577888885543 69999999999998743
No 59
>3zcc_A HAMP, osmolarity sensor protein ENVZ; signaling protein, signal transduction, membrane protein, signalling, chimera; 1.25A {Archaeoglobus fulgidus} PDB: 3zrw_A 3zrv_A 3zrx_A 3zrw_B 2lfr_A 2lfs_A 1joy_A 2l7h_A 2l7i_A 2y20_A 2y21_A 2y0q_A 2y0t_A
Probab=95.28 E-value=0.24 Score=36.33 Aligned_cols=79 Identities=9% Similarity=0.063 Sum_probs=56.3
Q ss_pred ChhHHHHHHHHHHHHHHhhcCCCCCCchhHHHHHHHHHHHHHhccCchHHHHHHHHHHhcccCccccccChHHHHHHHHH
Q 017673 78 KPAVLKVRDWYLDSFRDLRSFPDIRSTSDERDFTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDR 157 (368)
Q Consensus 78 ~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~~~~~l~~~~~~~~~~~~~~~~~~~l~~ 157 (368)
..++..+...+.....++... .+...+++..+.|++++|++.+.+.+..+.. .....++.
T Consensus 36 ~dEi~~l~~~~n~m~~~l~~~--------~~~~~~~~~~~shel~tpl~~i~~~~e~l~~------------~~~~~~~~ 95 (114)
T 3zcc_A 36 ADEIGILAKSIERLRRSLKQL--------ADDGTLLMAGVSHDLRTPLTRIRLATEMMSE------------QDGYLAES 95 (114)
T ss_dssp SSHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHTSCG------------GGHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHhhHHHcChHHHHHHHHHHHHH------------hhhHHHHH
Confidence 568888888888887777542 2335668999999999999999966654431 11233455
Q ss_pred HHHhhHHHHHhHHHHhhhc
Q 017673 158 FYMSRIGIRMLIGQHVELH 176 (368)
Q Consensus 158 ~~~~~~~~~~li~~~l~l~ 176 (368)
+......+..++++++++.
T Consensus 96 i~~~~~~l~~~i~~ll~~~ 114 (114)
T 3zcc_A 96 INKDIEECNAIIEQFIDYL 114 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHhhC
Confidence 6666777888899988763
No 60
>4gfh_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, DNA supercoiling, DNA replication; HET: DNA PTR TSP ANP; 4.41A {Saccharomyces cerevisiae}
Probab=94.28 E-value=0.13 Score=54.47 Aligned_cols=88 Identities=23% Similarity=0.280 Sum_probs=54.7
Q ss_pred hHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEEEEeCCCeEEEEEeeeCCCCCCCCcc--------cccccccccCCCC
Q 017673 235 HLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLP--------KIFTYLYSTARNP 306 (368)
Q Consensus 235 ~l~~vl~nLl~NAi~~~~~~~~~~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~--------~if~~f~~~~~~~ 306 (368)
-|+.++.++|+||++..-..++ +..|.|++..+++ .|+|.|||.|||-+.-+ -||....++..-
T Consensus 59 GL~hl~~EildNsiDea~ag~~-----~~~I~V~i~~~d~--sisV~DnGRGIPvd~h~~~~~~~~Evv~t~LhAGgKF- 130 (1177)
T 4gfh_A 59 GLFKIFDEILVNAADNKVRDPS-----MKRIDVNIHAEEH--TIEVKNDGKGIPIEIHNKENIYIPEMIFGHLLTSSNY- 130 (1177)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTT-----CCEEEEEEETTTT--EEEEEECSSCCCCSBCTTTCSBHHHHHHHSSSEESCC-
T ss_pred eeeeEeeEEEEChHhHHhhCCC-----CCeEEEEEECCCC--EEEEEecCCcccccccCCCCCEeeeeeccccccccCc-
Confidence 5899999999999997655220 2458888875443 58999999999966432 233333322211
Q ss_pred CCcccccccCCCCCCccccChHHHHHHHH
Q 017673 307 LDENTDLAADKGTMAGYGYGLPISRLYAR 335 (368)
Q Consensus 307 ~~~~~~~~~~~~~~~g~GlGL~i~k~iv~ 335 (368)
+-+...-+++-.|+|.++|..+-+
T Consensus 131 -----d~~~ykvSGGLHGVG~svVNALS~ 154 (1177)
T 4gfh_A 131 -----DDDEKKVTGGRNGYGAKLCNIFST 154 (1177)
T ss_dssp -----CCSSCCCCSCCSSCHHHHHHHTEE
T ss_pred -----CCCCCeEeccCCChhhhHHhhcCC
Confidence 101122233447999998877543
No 61
>3zrx_A AF1503 protein, osmolarity sensor protein ENVZ; signaling protein, osmoregulation, OMPR, OMPC; 1.25A {Archaeoglobus fulgidus} PDB: 3zrv_A 3zrw_A 3zrw_B 2lfs_A 2lfr_A 1joy_A 2l7i_A 2y20_A 2l7h_A 2y21_A 2y0t_A 2y0q_A
Probab=92.68 E-value=1.5 Score=31.69 Aligned_cols=81 Identities=9% Similarity=0.073 Sum_probs=56.9
Q ss_pred CChhHHHHHHHHHHHHHHhhcCCCCCCchhHHHHHHHHHHHHHhccCchHHHHHHHHHHhcccCccccccChHHHHHHHH
Q 017673 77 EKPAVLKVRDWYLDSFRDLRSFPDIRSTSDERDFTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLD 156 (368)
Q Consensus 77 ~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~~~~~l~~~~~~~~~~~~~~~~~~~l~ 156 (368)
...++..+...++...+.+... .....+++....|++++|+..+...+..+... ..+..+
T Consensus 35 ~~dEi~~l~~~~n~m~~~l~~~--------~~~~~~~~~~~shel~~~l~~i~~~~~~l~~~------------~~~~~~ 94 (115)
T 3zrx_A 35 RADEIGILAKSIERLRRSLKQL--------ADDRTLLMAGVSHDLRTPLTRIRLATEMMSEQ------------DGYLAE 94 (115)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHTSCGG------------GHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh------------hHHHHH
Confidence 5578888888888877776542 12245689999999999999999777655321 134445
Q ss_pred HHHHhhHHHHHhHHHHhhhcC
Q 017673 157 RFYMSRIGIRMLIGQHVELHN 177 (368)
Q Consensus 157 ~~~~~~~~~~~li~~~l~l~~ 177 (368)
.+......+..++++++++++
T Consensus 95 ~~~~~~~~~~~~~~~l~~~~~ 115 (115)
T 3zrx_A 95 SINKDIEECNAIIEQFIDYLR 115 (115)
T ss_dssp HHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHhC
Confidence 555566667778888887764
No 62
>3lmm_A Uncharacterized protein; multi-domained alpha-beta protein, structural genomics, PSI- 2, protein structure initiative; 3.00A {Corynebacterium diphtheriae}
Probab=69.81 E-value=7.8 Score=37.82 Aligned_cols=104 Identities=21% Similarity=0.166 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEEEEeCCCeEEEEEeeeCC---CCCCCCcccccccccccCCCCCCccccc
Q 017673 237 HLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGG---GIPRSGLPKIFTYLYSTARNPLDENTDL 313 (368)
Q Consensus 237 ~~vl~nLl~NAi~~~~~~~~~~~~~~~~I~i~~~~~~~~~~i~V~D~G~---Gi~~~~~~~if~~f~~~~~~~~~~~~~~ 313 (368)
..++.++|-||+-|..= .. +++|.|.+..-++ .|.|.+-|. |++.+.+ ... .+ .. .+.+
T Consensus 298 ~~aiREal~NAl~HrDY--~~----~~~i~i~i~~~~d--riei~npG~l~~~~t~e~~---~~~-~s-~R-----Np~l 359 (583)
T 3lmm_A 298 RLAVREAMLNAMIHRDW--NR----SEPIDVRWIELDS--TLIVRSPGGFPAAITSENV---LSN-RA-AR-----YPAL 359 (583)
T ss_dssp HHHHHHHHHHHHHHSCS--SS----SSCEEEEEETTTT--EEEEEEESCCCTTCCTTSS---TTC-CC-CS-----CHHH
T ss_pred HHHHHHHHHHHHhcccc--CC----CCCEEEEEEecCC--EEEEEcCCCCCCCCCHHHh---cCC-CC-CC-----CHHH
Confidence 56899999999998532 11 4689988872233 578888875 4444432 221 11 00 0110
Q ss_pred c---cCCCCCCccccChHHHHHHHHHhCCe-EEEEecCCCceEEEEEeCCC
Q 017673 314 A---ADKGTMAGYGYGLPISRLYARYFGGD-LQIISMEGYGTDAYLHLSRL 360 (368)
Q Consensus 314 ~---~~~~~~~g~GlGL~i~k~iv~~~gG~-i~v~s~~g~Gt~f~i~lP~~ 360 (368)
. ..-.-..+.|-|+.-+...++.+|.. -.+.... |..|.++||..
T Consensus 360 a~~~~~~~~~e~~GsGi~~i~~~~~~~g~~~P~~~~~~--~~~~~v~l~~~ 408 (583)
T 3lmm_A 360 ADLYRALGLVDKQGVGVDRMYQAMIALGHRPPTIEEIA--GPFVETTLVGG 408 (583)
T ss_dssp HHHHHHTTCSCSSHHHHHHHHHHHHHTTCCCCEEEEET--TTEEEEEEECC
T ss_pred HHHHHHhCccccCCcHHHHHHHHHHHcCCCCCeEEEcC--CCEEEEEEeCC
Confidence 0 00111246777888888888888763 3455433 35777888764
No 63
>4avr_A PA4485; unknown function, GRAM-negative bacteria, infectious disease structure-based inhibitor design; 1.08A {Pseudomonas aeruginosa PA01}
Probab=27.69 E-value=60 Score=23.10 Aligned_cols=28 Identities=18% Similarity=0.292 Sum_probs=21.8
Q ss_pred CCCEEEEEEeCCCeEEEEEeeeCCCCCC
Q 017673 262 APPIRIIVADGLEDVTIKVSDEGGGIPR 289 (368)
Q Consensus 262 ~~~I~i~~~~~~~~~~i~V~D~G~Gi~~ 289 (368)
+..|+|+-...+..+.++|-|.||..+.
T Consensus 39 gt~vrVtNl~nGksVvVrVnDRGP~~~g 66 (95)
T 4avr_A 39 GARVRVTNLDNRRSVVVRINDRGPFRRG 66 (95)
T ss_dssp TCEEEEEETTTCCEEEEEEEECCCCSTT
T ss_pred CcEEEEEECCCCcEEEEEEccCCCCCCC
Confidence 4567776667788999999999996653
No 64
>1xhj_A Nitrogen fixation protein NIFU; alpha-beta, NIFU-like, structural genomics, protein structur initiative, NESG, PSI; NMR {Staphylococcus epidermidis} SCOP: d.52.8.1
Probab=25.52 E-value=1.1e+02 Score=21.30 Aligned_cols=29 Identities=28% Similarity=0.354 Sum_probs=22.2
Q ss_pred HHHHHHHHHhCCeEEEEecCCCceEEEEEeC
Q 017673 328 PISRLYARYFGGDLQIISMEGYGTDAYLHLS 358 (368)
Q Consensus 328 ~i~k~iv~~~gG~i~v~s~~g~Gt~f~i~lP 358 (368)
.-+|-.++.+||++.+....+ | .++|.|-
T Consensus 17 ~~IRP~L~~dGGdvelv~v~~-g-~V~V~L~ 45 (88)
T 1xhj_A 17 ERLRPFLLRDGGDCTLVDVED-G-IVKLQLH 45 (88)
T ss_dssp HHHHHHHHHHSCEEEEEECCS-S-EEEEEEE
T ss_pred HHhcHHHHhcCCeEEEEEEEC-C-EEEEEEe
Confidence 347888899999999999864 3 5666664
Done!