BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 017674
         (368 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9FZ45|Y1686_ARATH Uncharacterized membrane protein At1g16860 OS=Arabidopsis thaliana
           GN=At1g16860 PE=1 SV=1
          Length = 474

 Score =  357 bits (917), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 208/415 (50%), Positives = 264/415 (63%), Gaps = 60/415 (14%)

Query: 1   MTTRIPSHQLSSGLYVSGRPEQLKERQPTMASRAVPYTGGDVKKSGELGKMFDIQVTDQA 60
           M +R PSHQLS+GL+VSGRPEQ KER PTM++ A+PYTGGD+K+SGELGKMFDI      
Sbjct: 1   MGSRYPSHQLSNGLFVSGRPEQPKERAPTMSAVAMPYTGGDIKRSGELGKMFDIPADGTK 60

Query: 61  NTK---LPSRPSSS--------SQPN--------SGSVRSG-------SNSGPV------ 88
           + K   +P  PS S        S P         SGS+ S        +NSGP+      
Sbjct: 61  SRKSGPIPGAPSRSGSFAGTAQSGPGAPMATGRMSGSLASAGSVSMKKTNSGPLSKHGEP 120

Query: 89  -KKTSGP------------LPLQP-TGLITSGPIGSGPLSN-----RRSGQLDYSG-SGS 128
            KK+SGP            +P+ P TGLITSGPI SGPL++     + SG LD SG   S
Sbjct: 121 LKKSSGPQSGGVTRQNSGSIPILPATGLITSGPITSGPLNSSGAPRKVSGPLDSSGLMKS 180

Query: 129 GSVKAGYGSAVTSLG--EDVKVGFRVSRAVAWVVMVVVAMGVMVGAFLMVAVKKAVVLVA 186
                 +  AVT+LG  +D        + V W+V+++  MG + G F++ AV   ++LV 
Sbjct: 181 HMPTVVHNQAVTTLGPEDDFSCLKSFPKPVLWLVVLIFIMGFLAGGFILGAVHNPILLVV 240

Query: 187 VA---AVVGPLFIGMIWNCVWGRRGLLGFVKKYPDTELRGAIDGQYVKVTGVVTCGSIPL 243
           VA    VV  LFI   WN  WGRRG+  F+ +YPD +LR A +GQ+VKVTGVVTCG++PL
Sbjct: 241 VAILFTVVAALFI---WNICWGRRGITDFIARYPDADLRTAKNGQHVKVTGVVTCGNVPL 297

Query: 244 ESSYQRVPRCVYVSTELHEYKGCGGKPANPKHRCFSWGSRHLEKYVSDFYISDFQSGLRA 303
           ESS+ RVPRCVY ST L+EY+G G KPAN  HR F+WG R  E++V DFYISDFQSGLRA
Sbjct: 298 ESSFHRVPRCVYTSTCLYEYRGWGSKPANSSHRHFTWGLRSSERHVVDFYISDFQSGLRA 357

Query: 304 LVKAGYGAKVAPFVKPATVVNITKGNRDLSPSFLRWLADRNLSSDDRIMRLKEGF 358
           LVK G GAKV P V  + V++  +G+  +SP F+RWL  +NL+SDDRIMRLKEG+
Sbjct: 358 LVKTGSGAKVTPLVDDSVVIDFKQGSEQVSPDFVRWLGKKNLTSDDRIMRLKEGY 412


>sp|O87626|PBPA_NEIFL Penicillin-binding protein 1A OS=Neisseria flavescens GN=mrcA PE=3
           SV=1
          Length = 798

 Score = 33.9 bits (76), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 18/75 (24%), Positives = 34/75 (45%)

Query: 27  QPTMASRAVPYTGGDVKKSGELGKMFDIQVTDQANTKLPSRPSSSSQPNSGSVRSGSNSG 86
           +P  A   V   GG+V     +    D+ + +      P++P+  + PN    R+ SN+ 
Sbjct: 711 KPMKAPEGVVTNGGEVYMRERMTTSSDLALDNSGIRPRPTQPARRAVPNENRRRAESNTA 770

Query: 87  PVKKTSGPLPLQPTG 101
           P ++ S   P+ P+ 
Sbjct: 771 PAREESDETPVLPSN 785


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.318    0.135    0.405 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 142,398,632
Number of Sequences: 539616
Number of extensions: 6328678
Number of successful extensions: 21175
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 75
Number of HSP's that attempted gapping in prelim test: 20823
Number of HSP's gapped (non-prelim): 354
length of query: 368
length of database: 191,569,459
effective HSP length: 119
effective length of query: 249
effective length of database: 127,355,155
effective search space: 31711433595
effective search space used: 31711433595
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)