Query 017674
Match_columns 368
No_of_seqs 56 out of 58
Neff 3.2
Searched_HMMs 46136
Date Fri Mar 29 02:27:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017674.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017674hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF13829 DUF4191: Domain of un 92.9 0.15 3.3E-06 48.9 4.7 75 155-230 26-103 (224)
2 PF13567 DUF4131: Domain of un 91.9 5.9 0.00013 32.3 13.9 22 328-349 147-168 (176)
3 PF12483 GIDE: E3 Ubiquitin li 90.5 0.92 2E-05 39.7 6.7 82 279-366 18-100 (160)
4 PF12273 RCR: Chitin synthesis 82.7 0.88 1.9E-05 39.0 2.1 28 180-207 1-29 (130)
5 cd06094 RP_Saci_like RP_Saci_l 81.7 1.2 2.7E-05 37.4 2.6 24 292-315 1-24 (89)
6 PF11151 DUF2929: Protein of u 81.1 4.1 8.9E-05 31.4 5.1 41 155-196 6-46 (57)
7 TIGR02762 TraL_TIGR type IV co 77.4 7.2 0.00016 32.5 5.8 31 141-173 8-39 (95)
8 PF10003 DUF2244: Integral mem 77.2 9 0.00019 33.6 6.6 61 153-234 9-70 (140)
9 PF10907 DUF2749: Protein of u 76.4 1.3 2.8E-05 35.7 1.1 49 181-231 3-63 (66)
10 PRK13254 cytochrome c-type bio 72.8 6.5 0.00014 35.4 4.8 57 179-241 7-65 (148)
11 PF03100 CcmE: CcmE; InterPro 70.8 4.3 9.3E-05 35.2 3.0 17 225-241 48-64 (131)
12 PRK01844 hypothetical protein; 68.9 6.4 0.00014 32.3 3.5 33 182-219 7-39 (72)
13 PF15050 SCIMP: SCIMP protein 68.3 5.6 0.00012 35.8 3.3 26 180-205 8-33 (133)
14 TIGR03750 conj_TIGR03750 conju 68.0 11 0.00024 32.9 5.0 73 158-237 25-108 (111)
15 PRK10881 putative hydrogenase 67.6 8.5 0.00019 38.7 4.8 38 134-178 38-77 (394)
16 COG3763 Uncharacterized protei 67.1 6.8 0.00015 32.1 3.3 33 182-219 7-39 (71)
17 PRK00523 hypothetical protein; 66.7 7.5 0.00016 31.9 3.5 35 181-220 7-41 (72)
18 PF04246 RseC_MucC: Positive r 66.5 20 0.00044 30.6 6.2 42 163-204 77-118 (135)
19 COG5015 Uncharacterized conser 61.7 7.4 0.00016 35.1 2.8 34 206-239 46-80 (132)
20 PF11833 DUF3353: Protein of u 60.8 15 0.00033 34.4 4.8 30 151-181 138-167 (194)
21 PRK13823 conjugal transfer pro 60.6 18 0.00038 30.7 4.7 38 163-201 26-63 (94)
22 PF08114 PMP1_2: ATPase proteo 58.3 11 0.00024 28.3 2.7 29 184-212 14-43 (43)
23 PF14362 DUF4407: Domain of un 58.1 14 0.0003 35.5 4.2 27 186-215 46-72 (301)
24 PRK08456 flagellar motor prote 57.3 20 0.00043 34.6 5.0 55 161-215 8-69 (257)
25 PF04156 IncA: IncA protein; 56.8 22 0.00048 31.6 5.0 35 171-205 29-63 (191)
26 PRK13707 conjugal transfer pil 55.5 56 0.0012 27.8 6.9 26 198-223 71-98 (101)
27 PF11241 DUF3043: Protein of u 54.7 26 0.00057 32.6 5.2 34 189-222 107-140 (170)
28 PF06305 DUF1049: Protein of u 54.5 15 0.00033 27.6 3.1 21 152-172 16-36 (68)
29 PRK14762 membrane protein; Pro 54.2 12 0.00026 25.6 2.1 16 154-169 2-17 (27)
30 PRK09109 motC flagellar motor 54.0 24 0.00053 33.8 5.1 56 160-215 7-69 (246)
31 PF05915 DUF872: Eukaryotic pr 53.8 18 0.00038 31.5 3.7 55 152-206 39-104 (115)
32 PF11990 DUF3487: Protein of u 53.2 28 0.0006 30.5 4.9 50 149-200 20-69 (121)
33 PRK10862 SoxR reducing system 52.6 32 0.00069 30.9 5.3 58 144-202 63-123 (154)
34 PRK13165 cytochrome c-type bio 51.8 35 0.00075 31.6 5.5 18 224-241 54-71 (160)
35 PF13779 DUF4175: Domain of un 51.0 22 0.00049 39.9 4.9 60 157-216 10-71 (820)
36 PF05425 CopD: Copper resistan 51.0 31 0.00067 28.2 4.6 59 151-209 6-69 (105)
37 PF03916 NrfD: Polysulphide re 50.6 26 0.00056 33.6 4.7 33 139-178 2-34 (313)
38 PF00558 Vpu: Vpu protein; In 49.9 16 0.00035 30.5 2.8 27 179-205 2-28 (81)
39 PF03597 CcoS: Cytochrome oxid 48.5 24 0.00052 26.3 3.2 21 183-203 6-26 (45)
40 PF11712 Vma12: Endoplasmic re 48.2 51 0.0011 28.8 5.8 49 158-206 87-137 (142)
41 PTZ00382 Variant-specific surf 48.1 7.1 0.00015 32.7 0.4 17 191-207 79-95 (96)
42 PF06645 SPC12: Microsomal sig 47.8 27 0.00059 28.2 3.7 49 155-204 12-60 (76)
43 PF06374 NDUF_C2: NADH-ubiquin 46.9 54 0.0012 29.0 5.7 57 161-218 29-96 (117)
44 TIGR00847 ccoS cytochrome oxid 46.0 29 0.00062 26.7 3.4 21 184-204 8-28 (51)
45 TIGR03818 MotA1 flagellar moto 45.9 38 0.00082 33.4 5.1 45 161-205 6-56 (282)
46 PRK06743 flagellar motor prote 45.6 28 0.00061 33.9 4.1 28 178-205 28-55 (254)
47 PF03672 UPF0154: Uncharacteri 45.4 18 0.0004 29.0 2.3 30 184-218 2-31 (64)
48 PRK13150 cytochrome c-type bio 44.8 52 0.0011 30.4 5.5 18 224-241 54-71 (159)
49 PF02439 Adeno_E3_CR2: Adenovi 44.4 33 0.00072 25.2 3.3 26 182-207 8-33 (38)
50 TIGR01116 ATPase-IIA1_Ca sarco 42.3 62 0.0013 36.3 6.6 80 152-232 5-86 (917)
51 COG3197 FixS Uncharacterized p 41.8 28 0.00062 27.6 2.8 20 183-202 7-26 (58)
52 PF11808 DUF3329: Domain of un 41.4 89 0.0019 25.6 5.8 21 195-216 38-58 (90)
53 KOG0887 60S ribosomal protein 40.9 20 0.00043 31.6 2.1 47 225-283 29-75 (111)
54 PRK09110 flagellar motor prote 40.8 47 0.001 32.8 4.8 53 161-213 6-65 (283)
55 PRK08124 flagellar motor prote 40.1 56 0.0012 31.7 5.2 45 161-205 8-58 (263)
56 PRK12482 flagellar motor prote 39.7 54 0.0012 32.6 5.1 46 160-205 5-56 (287)
57 PRK13159 cytochrome c-type bio 39.4 42 0.0009 30.9 4.0 18 224-241 48-65 (155)
58 PF03419 Peptidase_U4: Sporula 38.9 1E+02 0.0022 29.8 6.7 42 221-263 160-201 (293)
59 PF11023 DUF2614: Protein of u 38.3 61 0.0013 28.8 4.7 45 148-192 4-49 (114)
60 PF11846 DUF3366: Domain of un 37.8 97 0.0021 27.5 6.0 56 158-213 21-83 (193)
61 PF06703 SPC25: Microsomal sig 37.3 2.9E+02 0.0064 24.4 9.9 48 180-233 56-103 (162)
62 PRK08990 flagellar motor prote 37.2 70 0.0015 31.1 5.3 40 166-205 18-57 (254)
63 PF06679 DUF1180: Protein of u 36.4 32 0.00069 31.8 2.8 31 185-216 99-129 (163)
64 PRK10747 putative protoheme IX 35.5 86 0.0019 31.1 5.8 9 173-181 27-35 (398)
65 PRK14992 tetrathionate reducta 35.4 57 0.0012 33.1 4.6 23 157-179 16-38 (335)
66 KOG1016 Predicted DNA helicase 35.3 19 0.00041 41.3 1.3 16 7-22 1199-1214(1387)
67 PF05934 MCLC: Mid-1-related c 34.8 58 0.0013 35.4 4.7 85 118-205 146-230 (549)
68 PF01988 VIT1: VIT family; In 34.5 75 0.0016 29.3 4.9 16 158-173 132-147 (213)
69 COG1291 MotA Flagellar motor c 33.6 31 0.00068 34.2 2.4 50 174-223 27-77 (266)
70 COG2332 CcmE Cytochrome c-type 33.6 74 0.0016 29.5 4.6 57 179-241 7-65 (153)
71 COG1585 Membrane protein impli 33.6 1.8E+02 0.0038 26.0 6.9 24 156-179 6-31 (140)
72 PF12273 RCR: Chitin synthesis 33.5 30 0.00065 29.7 2.0 26 186-211 4-29 (130)
73 PF05545 FixQ: Cbb3-type cytoc 33.4 60 0.0013 23.7 3.3 33 184-216 12-44 (49)
74 COG0811 TolQ Biopolymer transp 33.4 43 0.00093 31.4 3.2 23 183-205 167-189 (216)
75 TIGR01523 ATPase-IID_K-Na pota 32.8 1E+02 0.0022 35.5 6.5 53 179-232 79-131 (1053)
76 PF11292 DUF3093: Protein of u 32.7 97 0.0021 28.2 5.2 41 158-199 13-53 (143)
77 PRK10490 sensor protein KdpD; 32.4 34 0.00073 38.2 2.7 15 190-204 449-463 (895)
78 PF10281 Ish1: Putative stress 32.0 38 0.00082 23.6 2.0 17 333-349 6-22 (38)
79 PRK13629 threonine/serine tran 31.6 59 0.0013 34.3 4.1 61 158-224 24-87 (443)
80 PRK01122 potassium-transportin 31.2 1.2E+02 0.0025 33.6 6.4 34 136-173 19-52 (679)
81 TIGR02916 PEP_his_kin putative 31.1 89 0.0019 33.2 5.4 19 149-167 221-239 (679)
82 PRK07118 ferredoxin; Validated 31.0 32 0.0007 33.6 2.0 26 155-180 3-28 (280)
83 PF14110 DUF4282: Domain of un 30.8 94 0.002 25.4 4.4 21 152-172 13-33 (90)
84 PF00924 MS_channel: Mechanose 30.4 53 0.0011 28.9 3.1 12 223-234 60-71 (206)
85 PF11432 DUF3197: Protein of u 30.2 54 0.0012 29.0 3.0 62 292-364 19-86 (113)
86 PF10112 Halogen_Hydrol: 5-bro 30.1 91 0.002 28.3 4.7 30 154-183 6-35 (199)
87 PRK01844 hypothetical protein; 29.6 38 0.00083 27.9 1.9 16 157-172 3-18 (72)
88 COG5488 Integral membrane prot 29.5 56 0.0012 30.6 3.1 52 153-205 28-79 (164)
89 TIGR01944 rnfB electron transp 29.0 37 0.00079 30.4 1.9 24 156-179 2-25 (165)
90 PF05454 DAG1: Dystroglycan (D 28.8 19 0.0004 36.0 0.0 11 195-205 161-171 (290)
91 TIGR02302 aProt_lowcomp conser 28.7 78 0.0017 36.1 4.7 57 159-215 26-83 (851)
92 PF07790 DUF1628: Protein of u 28.7 57 0.0012 25.6 2.7 22 181-202 9-30 (80)
93 PRK13387 1,4-dihydroxy-2-napht 28.4 74 0.0016 31.5 4.0 34 152-186 86-119 (317)
94 TIGR00540 hemY_coli hemY prote 28.3 1.1E+02 0.0024 30.4 5.2 9 173-181 27-35 (409)
95 COG3601 Predicted membrane pro 28.2 73 0.0016 30.4 3.8 55 156-212 40-110 (186)
96 TIGR00751 menA 1,4-dihydroxy-2 28.2 83 0.0018 30.7 4.3 25 153-177 76-100 (284)
97 PF01925 TauE: Sulfite exporte 28.0 1.1E+02 0.0024 27.5 4.7 44 152-195 61-104 (240)
98 PF05879 RHD3: Root hair defec 28.0 66 0.0014 35.7 3.9 43 157-202 651-693 (742)
99 PF09788 Tmemb_55A: Transmembr 28.0 65 0.0014 32.0 3.5 46 159-205 206-251 (256)
100 TIGR02056 ChlG chlorophyll syn 27.8 89 0.0019 30.5 4.4 23 153-175 98-120 (306)
101 PF07291 MauE: Methylamine uti 27.5 1.3E+02 0.0029 27.7 5.3 57 152-208 45-102 (184)
102 PF13630 SdpI: SdpI/YhfL prote 27.0 1.3E+02 0.0029 22.7 4.4 9 147-155 8-16 (76)
103 PF12576 DUF3754: Protein of u 26.8 1.6E+02 0.0034 26.0 5.4 18 196-213 106-124 (141)
104 PF02535 Zip: ZIP Zinc transpo 26.6 88 0.0019 29.2 4.0 44 158-201 233-280 (317)
105 cd04478 RPA2_DBD_D RPA2_DBD_D: 26.4 58 0.0013 25.6 2.4 20 219-238 43-62 (95)
106 PF04971 Lysis_S: Lysis protei 26.2 69 0.0015 26.2 2.8 24 186-209 35-60 (68)
107 PF02037 SAP: SAP domain; Int 26.2 56 0.0012 22.5 2.0 17 334-350 7-23 (35)
108 PRK10714 undecaprenyl phosphat 26.1 1.2E+02 0.0025 29.7 4.9 19 158-176 236-254 (325)
109 COG4303 EutB Ethanolamine ammo 26.1 50 0.0011 34.5 2.5 23 329-351 420-442 (453)
110 PF14023 DUF4239: Protein of u 26.0 1.4E+02 0.0031 27.0 5.1 9 152-161 135-143 (209)
111 PF09972 DUF2207: Predicted me 26.0 1.2E+02 0.0027 29.9 5.1 10 158-167 402-411 (511)
112 KOG2927 Membrane component of 25.9 1.4E+02 0.0031 31.2 5.6 66 145-210 176-257 (372)
113 PF10873 DUF2668: Protein of u 25.8 32 0.0007 31.8 0.9 15 160-174 68-82 (155)
114 PRK05113 electron transport co 25.6 47 0.001 30.6 2.0 24 155-178 3-26 (191)
115 PF05834 Lycopene_cycl: Lycope 25.4 2.3E+02 0.005 27.9 6.8 44 317-361 198-243 (374)
116 PRK10847 hypothetical protein; 24.7 1.6E+02 0.0034 27.4 5.3 17 155-172 164-180 (219)
117 PF10969 DUF2771: Protein of u 24.6 63 0.0014 29.4 2.6 50 182-239 6-55 (161)
118 COG4965 TadB Flp pilus assembl 24.6 93 0.002 31.6 4.0 14 206-219 128-141 (309)
119 PRK07419 1,4-dihydroxy-2-napht 24.5 90 0.0019 30.9 3.8 32 153-185 92-123 (304)
120 PRK12392 bacteriochlorophyll c 24.5 1.2E+02 0.0025 30.5 4.6 24 153-176 94-117 (331)
121 TIGR03794 NHPM_micro_HlyD NHPM 23.9 88 0.0019 31.4 3.7 13 191-203 27-39 (421)
122 PF06993 DUF1304: Protein of u 23.8 1.7E+02 0.0037 25.2 4.9 41 162-203 52-92 (113)
123 PF01957 NfeD: NfeD-like C-ter 23.7 69 0.0015 26.5 2.5 22 280-310 114-135 (144)
124 TIGR01522 ATPase-IIA2_Ca golgi 23.7 1.9E+02 0.0041 32.4 6.5 33 199-232 98-130 (884)
125 COG5336 Uncharacterized protei 23.6 53 0.0011 29.3 1.8 16 158-173 75-90 (116)
126 PRK10617 cytochrome c-type pro 23.1 61 0.0013 30.7 2.3 10 235-244 84-93 (200)
127 PF15125 TMEM238: TMEM238 prot 23.1 1.8E+02 0.0038 23.8 4.5 37 155-193 5-44 (65)
128 TIGR00267 conserved hypothetic 22.8 1.7E+02 0.0036 26.6 4.9 13 160-172 91-103 (169)
129 PF07332 DUF1469: Protein of u 22.5 2.5E+02 0.0054 23.2 5.6 24 179-202 70-93 (121)
130 PF14654 Epiglycanin_C: Mucin, 22.4 56 0.0012 28.7 1.7 15 160-174 26-40 (106)
131 PF09527 ATPase_gene1: Putativ 22.3 1.9E+02 0.0042 21.2 4.3 45 157-203 7-51 (55)
132 PF06912 DUF1275: Protein of u 22.2 1.4E+02 0.003 27.0 4.3 37 157-193 168-204 (209)
133 cd04483 hOBFC1_like hOBFC1_lik 22.1 97 0.0021 25.5 3.0 19 220-238 59-77 (92)
134 PF07178 TraL: TraL protein; 22.0 1.4E+02 0.003 24.7 3.9 12 212-223 81-92 (95)
135 PF04120 Iron_permease: Low af 21.9 2.4E+02 0.0052 25.4 5.6 58 155-212 15-74 (132)
136 cd00780 NTF2 Nuclear transport 21.9 62 0.0014 26.6 1.9 44 197-240 33-89 (119)
137 PF05961 Chordopox_A13L: Chord 21.8 1.1E+02 0.0024 25.1 3.2 21 187-207 7-27 (68)
138 PF03302 VSP: Giardia variant- 21.6 49 0.0011 33.8 1.4 17 36-52 216-232 (397)
139 PF05884 ZYG-11_interact: Inte 21.5 1E+02 0.0022 31.4 3.5 59 137-195 86-147 (299)
140 PRK10755 sensor protein BasS/P 21.3 1.9E+02 0.0042 27.2 5.2 20 323-342 282-301 (356)
141 PF11239 DUF3040: Protein of u 21.1 1.7E+02 0.0037 23.4 4.2 6 168-173 56-61 (82)
142 PHA03049 IMV membrane protein; 21.0 98 0.0021 25.4 2.7 21 187-207 7-27 (68)
143 PF09991 DUF2232: Predicted me 20.9 2E+02 0.0042 26.5 5.1 24 150-173 200-223 (290)
144 PRK12872 ubiA prenyltransferas 20.7 1.5E+02 0.0033 27.9 4.4 34 154-187 77-110 (285)
145 PHA00736 hypothetical protein 20.7 1.8E+02 0.004 24.0 4.2 52 155-215 15-70 (79)
146 cd04486 YhcR_OBF_like YhcR_OBF 20.5 99 0.0022 24.7 2.7 16 222-237 43-58 (78)
147 PRK03818 putative transporter; 20.5 1.3E+02 0.0029 32.1 4.4 34 147-180 49-88 (552)
148 PF12650 DUF3784: Domain of un 20.4 1.4E+02 0.003 24.3 3.5 15 167-181 56-70 (97)
149 PF04156 IncA: IncA protein; 20.3 2.4E+02 0.0053 25.0 5.4 7 211-217 59-65 (191)
150 TIGR02161 napC_nirT periplasmi 20.3 74 0.0016 29.7 2.2 8 236-243 76-83 (185)
151 PRK12504 putative monovalent c 20.1 1.7E+02 0.0036 27.3 4.4 40 157-196 3-42 (178)
No 1
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=92.89 E-value=0.15 Score=48.88 Aligned_cols=75 Identities=12% Similarity=0.158 Sum_probs=55.4
Q ss_pred hhHHHHHHHHHHHHHhhheehheehhHHHHHHHHHHHHHHHHHhhhhhhhchhhhhhhhccCCCc---ccccCCCCcEE
Q 017674 155 AVAWVVMVVVAMGVMVGAFLMVAVKKAVVLVAVAAVVGPLFIGMIWNCVWGRRGLLGFVKKYPDT---ELRGAIDGQYV 230 (368)
Q Consensus 155 ~vlw~vi~l~~~g~~aG~f~l~av~~~~ll~~~~~lf~~v~a~~iWN~~~~~~~i~rfl~r~Pdt---~lr~a~dGq~V 230 (368)
.+.|.+++.|+..++++..|-..+++|++++++++++++++|+|+++- +..++....+..-|.+ .|++++-|=.|
T Consensus 26 ~l~~~ml~a~l~~~~v~v~ig~l~~~~~~~~i~gi~~g~l~am~vl~r-ra~ra~Y~qieGqpGAa~avL~~lr~~W~~ 103 (224)
T PF13829_consen 26 KLPWLMLGAFLGPIAVFVLIGLLFGSWWYWLIIGILLGLLAAMIVLSR-RAQRAAYAQIEGQPGAAGAVLDNLRRGWRV 103 (224)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcCCCchHHHHHHhhcCCccc
Confidence 455888888888888888888888899999999999999998887753 2356666777777765 45555554333
No 2
>PF13567 DUF4131: Domain of unknown function (DUF4131)
Probab=91.94 E-value=5.9 Score=32.27 Aligned_cols=22 Identities=9% Similarity=0.206 Sum_probs=17.1
Q ss_pred CCCCCCHHHHHHHhhcCCCCcC
Q 017674 328 GNRDLSPSFLRWLADRNLSSDD 349 (368)
Q Consensus 328 ~~kdlS~~f~~WL~erNlSsd~ 349 (368)
..|.=.-++++||..+|+....
T Consensus 147 ~~Npg~FD~~~yl~~~gI~~~~ 168 (176)
T PF13567_consen 147 PTNPGGFDYQRYLRSKGIYAQG 168 (176)
T ss_pred CCCCCCcCHHHHHHHCCCEEEE
Confidence 3355667799999999998765
No 3
>PF12483 GIDE: E3 Ubiquitin ligase; InterPro: IPR022170 This domain family is found in bacteria, archaea and eukaryotes, and is typically between 150 and 163 amino acids in length. There is a single completely conserved residue E that may be functionally important. GIDE is an E3 ubiquitin ligase which is involved in inducing apoptosis. ; GO: 0016881 acid-amino acid ligase activity
Probab=90.49 E-value=0.92 Score=39.66 Aligned_cols=82 Identities=16% Similarity=0.190 Sum_probs=50.7
Q ss_pred cccceeeeeEeecEEEEecCCceeEEE-EecCCCeeeeeeeeceEEeecCCCCCCCHHHHHHHhhcCCCCcCceeeeeee
Q 017674 279 SWGSRHLEKYVSDFYISDFQSGLRALV-KAGYGAKVAPFVKPATVVNITKGNRDLSPSFLRWLADRNLSSDDRIMRLKEG 357 (368)
Q Consensus 279 ~W~lr~~E~~~~DFYIsDfqSG~RAlV-KaG~GakVtp~V~es~vvd~~~~~kdlS~~f~~WL~erNlSsd~r~mRlkEG 357 (368)
.|.+.+..+..+.||+.| ..-|.+| ....|+.+.--.+-+.. .+.+......+..|+...- ..+.+-.|++|-
T Consensus 18 ~~~~v~~~~~~vPF~L~D--~tg~v~V~~~p~~a~l~l~~v~~~f---~p~~~~~~~~~~~~~~~~~-~~~~~G~r~~E~ 91 (160)
T PF12483_consen 18 SWRTVSSGTSEVPFYLED--GTGRVRVVDDPEGAELDLETVYDRF---EPSPSSPPDGLFGFFSGER-ELEPKGYRYTEE 91 (160)
T ss_pred cEEEEEcceeEcCEEEEC--CceEEEEecCcccCccceeeEEEEe---EECCCCccceeeeeeccce-eccccccEEEEE
Confidence 499999999999999999 4455555 66667665432233332 1121234444444443322 101344799999
Q ss_pred ccccCCccc
Q 017674 358 FAPLFSVLC 366 (368)
Q Consensus 358 yIkeGe~i~ 366 (368)
.|.+|++|.
T Consensus 92 ~L~~G~~lt 100 (160)
T PF12483_consen 92 ILPVGTPLT 100 (160)
T ss_pred EcCCCCEEE
Confidence 999999874
No 4
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=82.73 E-value=0.88 Score=39.02 Aligned_cols=28 Identities=14% Similarity=0.138 Sum_probs=15.7
Q ss_pred hHHHHHHHHHHHHHHHHHhhh-hhhhchh
Q 017674 180 KAVVLVAVAAVVGPLFIGMIW-NCVWGRR 207 (368)
Q Consensus 180 ~~~ll~~~~~lf~~v~a~~iW-N~~~~~~ 207 (368)
+|+|+++++++|.+++.++++ |-.+.|+
T Consensus 1 RW~l~~iii~~i~l~~~~~~~~~rRR~r~ 29 (130)
T PF12273_consen 1 RWVLFAIIIVAILLFLFLFYCHNRRRRRR 29 (130)
T ss_pred CeeeHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 466776666666555555555 4443343
No 5
>cd06094 RP_Saci_like RP_Saci_like, retropepsin family. Retropepsin on retrotransposons with long terminal repeats (LTR) including Saci-1, -2 and -3 of Schistosoma mansoni. Retropepsins are related to fungal and mammalian pepsins. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified
Probab=81.67 E-value=1.2 Score=37.38 Aligned_cols=24 Identities=42% Similarity=0.595 Sum_probs=20.6
Q ss_pred EEEEecCCceeEEEEecCCCeeee
Q 017674 292 FYISDFQSGLRALVKAGYGAKVAP 315 (368)
Q Consensus 292 FYIsDfqSG~RAlVKaG~GakVtp 315 (368)
|||.|++||+|+||-||..-.|-|
T Consensus 1 l~v~D~~s~~~fLVDTGA~vSviP 24 (89)
T cd06094 1 LHVRDRTSGLRFLVDTGAAVSVLP 24 (89)
T ss_pred CeeEECCCCcEEEEeCCCceEeec
Confidence 799999999999999998755544
No 6
>PF11151 DUF2929: Protein of unknown function (DUF2929); InterPro: IPR021324 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=81.09 E-value=4.1 Score=31.40 Aligned_cols=41 Identities=12% Similarity=0.248 Sum_probs=27.4
Q ss_pred hhHHHHHHHHHHHHHhhheehheehhHHHHHHHHHHHHHHHH
Q 017674 155 AVAWVVMVVVAMGVMVGAFLMVAVKKAVVLVAVAAVVGPLFI 196 (368)
Q Consensus 155 ~vlw~vi~l~~~g~~aG~f~l~av~~~~ll~~~~~lf~~v~a 196 (368)
.+.|.+++..++|+++++.-=+.. |..--.++.++|+.+++
T Consensus 6 t~fWs~il~~vvgyI~ssL~~~~~-n~~~~~Ii~vi~~i~~~ 46 (57)
T PF11151_consen 6 TFFWSFILGEVVGYIGSSLTGVTY-NFTTAAIIAVIFGIIVA 46 (57)
T ss_pred hhHHHHHHHHHHHHHHHHHhCCCC-ChHHHHHHHHHHHHHHH
Confidence 568999999999999999876644 34433444444444443
No 7
>TIGR02762 TraL_TIGR type IV conjugative transfer system protein TraL. This protein is part of the type IV secretion system for conjugative plasmid transfer. The function of the TraL protein is unknown.
Probab=77.40 E-value=7.2 Score=32.48 Aligned_cols=31 Identities=16% Similarity=0.305 Sum_probs=16.7
Q ss_pred ccCccee-eeeeechhhHHHHHHHHHHHHHhhhe
Q 017674 141 SLGEDVK-VGFRVSRAVAWVVMVVVAMGVMVGAF 173 (368)
Q Consensus 141 ~l~~~~~-~~~~vpk~vlw~vi~l~~~g~~aG~f 173 (368)
.||++.+ +++.. --+-++++.|++|+++|-+
T Consensus 8 ~Ld~~~~i~g~t~--DE~i~~~~~~~~Gi~~~~~ 39 (95)
T TIGR02762 8 YLDEQPRILGLPL--DEFLPGATLFGIGILSGKA 39 (95)
T ss_pred ccCCCCeEEEeeH--HHHHHHHHHHHHHHHHhhH
Confidence 4566644 44333 3334556666667766644
No 8
>PF10003 DUF2244: Integral membrane protein (DUF2244); InterPro: IPR019253 This entry consists of various bacterial putative membrane proteins with no known function.
Probab=77.18 E-value=9 Score=33.55 Aligned_cols=61 Identities=20% Similarity=0.272 Sum_probs=40.3
Q ss_pred chhhHHHHHHHHHHHHHhhh-eehheehhHHHHHHHHHHHHHHHHHhhhhhhhchhhhhhhhccCCCcccccCCCCcEEE
Q 017674 153 SRAVAWVVMVVVAMGVMVGA-FLMVAVKKAVVLVAVAAVVGPLFIGMIWNCVWGRRGLLGFVKKYPDTELRGAIDGQYVK 231 (368)
Q Consensus 153 pk~vlw~vi~l~~~g~~aG~-f~l~av~~~~ll~~~~~lf~~v~a~~iWN~~~~~~~i~rfl~r~Pdt~lr~a~dGq~VK 231 (368)
|+..+|++++++++-++++. |.+... |.+|.-+++-++++..+|-+|+ +.+.+.|.|.
T Consensus 9 ~~g~~~~~~~~~~~~~~~a~~f~~~Ga--W~Vl~F~glev~~l~~a~~~~~-------------------r~~~~~E~I~ 67 (140)
T PF10003_consen 9 PRGFLIFIAILAAVSLIIAIAFLLMGA--WPVLPFAGLEVLALWYAFRRNY-------------------RHARDYERIT 67 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhch--HHHHHHHHHHHHHHHHHHHHHH-------------------hhCcCcEEEE
Confidence 56667777777777654443 333333 8888877777777777777776 3446677777
Q ss_pred EEE
Q 017674 232 VTG 234 (368)
Q Consensus 232 ItG 234 (368)
|+.
T Consensus 68 l~~ 70 (140)
T PF10003_consen 68 LSP 70 (140)
T ss_pred EeC
Confidence 776
No 9
>PF10907 DUF2749: Protein of unknown function (DUF2749); InterPro: IPR024475 This bacterial family of proteins represent the TrbJ and TrbK genes of the Ti plasmid conjugative transfer operon [].
Probab=76.45 E-value=1.3 Score=35.74 Aligned_cols=49 Identities=27% Similarity=0.292 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhch------------hhhhhhhccCCCcccccCCCCcEEE
Q 017674 181 AVVLVAVAAVVGPLFIGMIWNCVWGR------------RGLLGFVKKYPDTELRGAIDGQYVK 231 (368)
Q Consensus 181 ~~ll~~~~~lf~~v~a~~iWN~~~~~------------~~i~rfl~r~Pdt~lr~a~dGq~VK 231 (368)
..+||++++++++.++...|.+...+ +.=++||.. |.+|++.++||..|
T Consensus 3 ~~viIaL~~avaa~a~~atwviVq~~~a~~p~s~eeQr~~re~ff~~--~~~l~~i~~gqem~ 63 (66)
T PF10907_consen 3 RRVIIALVVAVAAAAGAATWVIVQPRPAGNPASSEEQRAHREKFFGG--DKDLRDIRGGQEMK 63 (66)
T ss_pred cchhHHHHHHHHhhhceeEEEEECCCCCCCCCChHHHHHHHHHHcCC--CCCCCCCCCCcccC
Confidence 34566777777888888888766654 334567765 45677889999654
No 10
>PRK13254 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=72.81 E-value=6.5 Score=35.44 Aligned_cols=57 Identities=21% Similarity=0.453 Sum_probs=30.6
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhhhchhhhhhhhccCCCcccc--cCCCCcEEEEEEEEEeccc
Q 017674 179 KKAVVLVAVAAVVGPLFIGMIWNCVWGRRGLLGFVKKYPDTELR--GAIDGQYVKVTGVVTCGSI 241 (368)
Q Consensus 179 ~~~~ll~~~~~lf~~v~a~~iWN~~~~~~~i~rfl~r~Pdt~lr--~a~dGq~VKItG~VtCG~~ 241 (368)
++..++++++++++.++++++++. +..+.-|+. | +++. ....|+.|+|.|.|.-|++
T Consensus 7 ~rl~~~~~~~~~~~~~~~L~~~a~---~~~~~yf~t--p-se~~~~~~~~g~~vrvgG~V~~gSi 65 (148)
T PRK13254 7 RRLLIILGALAALGLAVALVLYAL---RQNIVFFYT--P-SEVAEGEAPAGRRFRLGGLVEKGSV 65 (148)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH---HhCCceeeC--H-HHHhcCCccCCCeEEEeEEEecCcE
Confidence 344455555555555555555543 222222221 1 1222 1256999999999998865
No 11
>PF03100 CcmE: CcmE; InterPro: IPR004329 CcmE is the product of one of a cluster of Ccm genes that are necessary for cytochrome c biosynthesis in eubacteria. Expression of these proteins is induced when the organisms are grown under anaerobic conditions with nitrate or nitrite as the final electron acceptor.; GO: 0017003 protein-heme linkage, 0017004 cytochrome complex assembly, 0005886 plasma membrane; PDB: 1SR3_A 2KCT_A 1J6Q_A 1LM0_A.
Probab=70.76 E-value=4.3 Score=35.23 Aligned_cols=17 Identities=41% Similarity=0.591 Sum_probs=14.6
Q ss_pred CCCcEEEEEEEEEeccc
Q 017674 225 IDGQYVKVTGVVTCGSI 241 (368)
Q Consensus 225 ~dGq~VKItG~VtCG~~ 241 (368)
+.|+.|+|.|.|.-|++
T Consensus 48 ~~~~~vrv~G~V~~gSv 64 (131)
T PF03100_consen 48 KVGRKVRVGGLVVEGSV 64 (131)
T ss_dssp -TTSEEEEEEEEECTTE
T ss_pred cCCceEEEeeEEccCCE
Confidence 48999999999998875
No 12
>PRK01844 hypothetical protein; Provisional
Probab=68.86 E-value=6.4 Score=32.26 Aligned_cols=33 Identities=24% Similarity=0.400 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhchhhhhhhhccCCCc
Q 017674 182 VVLVAVAAVVGPLFIGMIWNCVWGRRGLLGFVKKYPDT 219 (368)
Q Consensus 182 ~ll~~~~~lf~~v~a~~iWN~~~~~~~i~rfl~r~Pdt 219 (368)
|+|++++.+.+++.++|+ .|+-.+.+|++.|--
T Consensus 7 I~l~I~~li~G~~~Gff~-----ark~~~k~lk~NPpi 39 (72)
T PRK01844 7 ILVGVVALVAGVALGFFI-----ARKYMMNYLQKNPPI 39 (72)
T ss_pred HHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHCCCC
Confidence 444444444555554443 477888899998754
No 13
>PF15050 SCIMP: SCIMP protein
Probab=68.30 E-value=5.6 Score=35.77 Aligned_cols=26 Identities=8% Similarity=0.037 Sum_probs=22.3
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhhhc
Q 017674 180 KAVVLVAVAAVVGPLFIGMIWNCVWG 205 (368)
Q Consensus 180 ~~~ll~~~~~lf~~v~a~~iWN~~~~ 205 (368)
=||+|+|+.+++..++++++|-+|+.
T Consensus 8 FWiiLAVaII~vS~~lglIlyCvcR~ 33 (133)
T PF15050_consen 8 FWIILAVAIILVSVVLGLILYCVCRW 33 (133)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 38999999999999999999977664
No 14
>TIGR03750 conj_TIGR03750 conjugative transfer region protein, TIGR03750 family. Members of this protein family are found occasionally on plasmids. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=67.97 E-value=11 Score=32.87 Aligned_cols=73 Identities=18% Similarity=0.226 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHhhheehheehhHHHHHHHHHHHHHHHHHhhh-hhhhc-hh---------hhhhhhccCCCcccccCCC
Q 017674 158 WVVMVVVAMGVMVGAFLMVAVKKAVVLVAVAAVVGPLFIGMIW-NCVWG-RR---------GLLGFVKKYPDTELRGAID 226 (368)
Q Consensus 158 w~vi~l~~~g~~aG~f~l~av~~~~ll~~~~~lf~~v~a~~iW-N~~~~-~~---------~i~rfl~r~Pdt~lr~a~d 226 (368)
|++.+=+++|+++|..+..... .+.++-++++++.++++++. .+..+ || .++.++.+++ +..
T Consensus 25 ~~~~~~~~~gl~~g~~l~~~~~-~w~~~p~~~lig~~l~v~~gg~~l~rlKRGrPe~yl~r~l~~~~~~~~------l~~ 97 (111)
T TIGR03750 25 VAAGVGLAAGLVLGLLLALLAG-PWALIPTGALLGPILVVLIGGKLLARLKRGKPEGYLYRKLEWKLARLG------LGR 97 (111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhHHHHHHHHcCCCchHHHHHHHHHHHHcC------CCC
Confidence 7777888889999977544444 56667777777888877777 43333 32 2333444443 355
Q ss_pred CcEEEEEEEEE
Q 017674 227 GQYVKVTGVVT 237 (368)
Q Consensus 227 Gq~VKItG~Vt 237 (368)
.+|+.-.|.=+
T Consensus 98 ~~lI~~sg~W~ 108 (111)
T TIGR03750 98 HRLILRSGGWS 108 (111)
T ss_pred CCeEEEeccee
Confidence 67777666533
No 15
>PRK10881 putative hydrogenase 2 b cytochrome subunit; Provisional
Probab=67.61 E-value=8.5 Score=38.68 Aligned_cols=38 Identities=21% Similarity=0.546 Sum_probs=27.8
Q ss_pred cccc-cccccCcceeeeeeechhhHHHHH-HHHHHHHHhhheehhee
Q 017674 134 GYGS-AVTSLGEDVKVGFRVSRAVAWVVM-VVVAMGVMVGAFLMVAV 178 (368)
Q Consensus 134 ~~~~-avt~l~~~~~~~~~vpk~vlw~vi-~l~~~g~~aG~f~l~av 178 (368)
.+|- +||++|++.-.| +|... +++.+|+.+|+|++++.
T Consensus 38 ~~Glg~vtg~~~~~~WG-------l~I~~y~~~~vglaag~~~is~~ 77 (394)
T PRK10881 38 VFGLGSVSNLNGGYPWG-------IWIAFDVLIGTGFACGGWALAWL 77 (394)
T ss_pred HhcchhhcCCCCCCCch-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3565 699999997777 25454 55677899999888863
No 16
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=67.15 E-value=6.8 Score=32.10 Aligned_cols=33 Identities=18% Similarity=0.266 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhchhhhhhhhccCCCc
Q 017674 182 VVLVAVAAVVGPLFIGMIWNCVWGRRGLLGFVKKYPDT 219 (368)
Q Consensus 182 ~ll~~~~~lf~~v~a~~iWN~~~~~~~i~rfl~r~Pdt 219 (368)
+|+++++.+++++.+ ++..|+-+..+|++.|--
T Consensus 7 il~ivl~ll~G~~~G-----~fiark~~~k~lk~NPpi 39 (71)
T COG3763 7 ILLIVLALLAGLIGG-----FFIARKQMKKQLKDNPPI 39 (71)
T ss_pred HHHHHHHHHHHHHHH-----HHHHHHHHHHHHhhCCCC
Confidence 344444444444444 455688999999999965
No 17
>PRK00523 hypothetical protein; Provisional
Probab=66.74 E-value=7.5 Score=31.87 Aligned_cols=35 Identities=14% Similarity=0.177 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhchhhhhhhhccCCCcc
Q 017674 181 AVVLVAVAAVVGPLFIGMIWNCVWGRRGLLGFVKKYPDTE 220 (368)
Q Consensus 181 ~~ll~~~~~lf~~v~a~~iWN~~~~~~~i~rfl~r~Pdt~ 220 (368)
||+|++++.+.+++.++|+ .|+-.+.+|++.|--+
T Consensus 7 ~I~l~i~~li~G~~~Gffi-----ark~~~k~l~~NPpin 41 (72)
T PRK00523 7 ALGLGIPLLIVGGIIGYFV-----SKKMFKKQIRENPPIT 41 (72)
T ss_pred HHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHCcCCC
Confidence 4455555555555555443 4777888999888643
No 18
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=66.51 E-value=20 Score=30.65 Aligned_cols=42 Identities=12% Similarity=0.111 Sum_probs=28.7
Q ss_pred HHHHHHHhhheehheehhHHHHHHHHHHHHHHHHHhhhhhhh
Q 017674 163 VVAMGVMVGAFLMVAVKKAVVLVAVAAVVGPLFIGMIWNCVW 204 (368)
Q Consensus 163 l~~~g~~aG~f~l~av~~~~ll~~~~~lf~~v~a~~iWN~~~ 204 (368)
+=.++|++|+++..++-..++..+++++.++++++++.-.+.
T Consensus 77 lPll~li~g~~l~~~~~~~e~~~~l~~l~~l~~~~~~~~~~~ 118 (135)
T PF04246_consen 77 LPLLALIAGAVLGSYLGGSELWAILGGLLGLALGFLILRLFD 118 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334567777777777776688888877777777666554443
No 19
>COG5015 Uncharacterized conserved protein [Function unknown]
Probab=61.70 E-value=7.4 Score=35.05 Aligned_cols=34 Identities=26% Similarity=0.403 Sum_probs=30.7
Q ss_pred hhhhhhhhccCCCccccc-CCCCcEEEEEEEEEec
Q 017674 206 RRGLLGFVKKYPDTELRG-AIDGQYVKVTGVVTCG 239 (368)
Q Consensus 206 ~~~i~rfl~r~Pdt~lr~-a~dGq~VKItG~VtCG 239 (368)
.+.+.+.++++|+.++.+ .+|||+|.|+|.++.-
T Consensus 46 tK~~yKqik~np~vefcg~~kdg~~vrlrg~a~f~ 80 (132)
T COG5015 46 TKPYYKQIKKNPEVEFCGMDKDGVMVRLRGRAEFV 80 (132)
T ss_pred ChHHHHHHhhCCCeEEEEecCCceEEEEeeeEEec
Confidence 567899999999999997 7999999999998864
No 20
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=60.81 E-value=15 Score=34.39 Aligned_cols=30 Identities=20% Similarity=0.489 Sum_probs=24.1
Q ss_pred eechhhHHHHHHHHHHHHHhhheehheehhH
Q 017674 151 RVSRAVAWVVMVVVAMGVMVGAFLMVAVKKA 181 (368)
Q Consensus 151 ~vpk~vlw~vi~l~~~g~~aG~f~l~av~~~ 181 (368)
++=|+++|.+..| +.|+++|+++...+...
T Consensus 138 ~~~rA~~~~~~~L-~~G~~lGs~l~~~l~~~ 167 (194)
T PF11833_consen 138 KLGRAFLWTLGGL-VVGLILGSLLASWLPVD 167 (194)
T ss_pred hHHHHHHHHHHHH-HHHHHHHHHHHhhcccc
Confidence 3669999999887 78999999988776443
No 21
>PRK13823 conjugal transfer protein TrbD; Provisional
Probab=60.59 E-value=18 Score=30.69 Aligned_cols=38 Identities=16% Similarity=0.138 Sum_probs=23.7
Q ss_pred HHHHHHHhhheehheehhHHHHHHHHHHHHHHHHHhhhh
Q 017674 163 VVAMGVMVGAFLMVAVKKAVVLVAVAAVVGPLFIGMIWN 201 (368)
Q Consensus 163 l~~~g~~aG~f~l~av~~~~ll~~~~~lf~~v~a~~iWN 201 (368)
+++.|+++++++++. ++|.-.++.+++..+...++.|-
T Consensus 26 ~i~~g~la~~l~~g~-~~~~a~~~gl~lw~v~h~~l~~m 63 (94)
T PRK13823 26 VMFSGLLAGILIFVA-QTWRAALFGIALWFGALFALRLM 63 (94)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 455788888877776 77764444444545555555664
No 22
>PF08114 PMP1_2: ATPase proteolipid family; InterPro: IPR012589 This family consists of small proteolipids associated with the plasma membrane H+ ATPase. Two proteolipids (PMP1 and PMP2) are associated with the ATPase and both genes are similarly expressed in the wild-type strain of yeast. No modification of the level of transcription of one PMP gene is detected in a strain deleted of the other. Though both proteolipids show similarity with other small proteolipids associated with other cation -transporting ATPases, their functions remain unclear [].
Probab=58.25 E-value=11 Score=28.27 Aligned_cols=29 Identities=21% Similarity=0.162 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHhhhhhhhc-hhhhhhh
Q 017674 184 LVAVAAVVGPLFIGMIWNCVWG-RRGLLGF 212 (368)
Q Consensus 184 l~~~~~lf~~v~a~~iWN~~~~-~~~i~rf 212 (368)
++.|+++...++++|||+-+-. +|++.||
T Consensus 14 F~lVglv~i~iva~~iYRKw~aRkr~l~rf 43 (43)
T PF08114_consen 14 FCLVGLVGIGIVALFIYRKWQARKRALQRF 43 (43)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3445555566777899955544 7777776
No 23
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=58.15 E-value=14 Score=35.48 Aligned_cols=27 Identities=22% Similarity=0.237 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHhhhhhhhchhhhhhhhcc
Q 017674 186 AVAAVVGPLFIGMIWNCVWGRRGLLGFVKK 215 (368)
Q Consensus 186 ~~~~lf~~v~a~~iWN~~~~~~~i~rfl~r 215 (368)
.+.++|+++.+++|+|+ .|.|.--+++
T Consensus 46 ~~ai~~glvwgl~I~~l---DR~ivss~~~ 72 (301)
T PF14362_consen 46 WAAIPFGLVWGLVIFNL---DRFIVSSIRK 72 (301)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHhcccc
Confidence 55566778888889988 4444444443
No 24
>PRK08456 flagellar motor protein MotA; Validated
Probab=57.27 E-value=20 Score=34.56 Aligned_cols=55 Identities=11% Similarity=0.064 Sum_probs=36.4
Q ss_pred HHHHHHHHHhhheeh------heehhHHHHHHHHHHHHHHHHHhhhhhhhc-hhhhhhhhcc
Q 017674 161 MVVVAMGVMVGAFLM------VAVKKAVVLVAVAAVVGPLFIGMIWNCVWG-RRGLLGFVKK 215 (368)
Q Consensus 161 i~l~~~g~~aG~f~l------~av~~~~ll~~~~~lf~~v~a~~iWN~~~~-~~~i~rfl~r 215 (368)
.+++++++++++|++ .-|+=+.++||+++-+++++..+-++.... -+.+...+++
T Consensus 8 G~~~~~~~i~~~~~~~gg~~~~~~~~~~~~IV~Ggt~~a~~i~~~~~~~~~~~~~~~~~f~~ 69 (257)
T PRK08456 8 GMVLAVASISVGDILEGGNPLHVIHLSSFIIVVPTALFAAMTATHKKYVKAAYKELKIVFKN 69 (257)
T ss_pred HHHHHHHHHHHHHHhcCCCcHHHhhHhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcc
Confidence 344455555555444 448888999999999999888888866665 4444455533
No 25
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=56.85 E-value=22 Score=31.62 Aligned_cols=35 Identities=11% Similarity=-0.177 Sum_probs=22.6
Q ss_pred hheehheehhHHHHHHHHHHHHHHHHHhhhhhhhc
Q 017674 171 GAFLMVAVKKAVVLVAVAAVVGPLFIGMIWNCVWG 205 (368)
Q Consensus 171 G~f~l~av~~~~ll~~~~~lf~~v~a~~iWN~~~~ 205 (368)
+++-+.++...++-++++++.++.+++-+.+++.+
T Consensus 29 ~~~~l~~~~s~~lg~~~lAlg~vL~~~g~~~~~~~ 63 (191)
T PF04156_consen 29 FISGLGALISFILGIALLALGVVLLSLGLLCLLSK 63 (191)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 33336777777777777776666666666665554
No 26
>PRK13707 conjugal transfer pilus assembly protein TraL; Provisional
Probab=55.51 E-value=56 Score=27.81 Aligned_cols=26 Identities=23% Similarity=0.316 Sum_probs=17.1
Q ss_pred hhhhhhhc-hhhhhh-hhccCCCccccc
Q 017674 198 MIWNCVWG-RRGLLG-FVKKYPDTELRG 223 (368)
Q Consensus 198 ~iWN~~~~-~~~i~r-fl~r~Pdt~lr~ 223 (368)
++.-+||- -..+.+ ++|+.||+-.|.
T Consensus 71 l~h~~YW~lP~~~~~~~~k~~P~S~~R~ 98 (101)
T PRK13707 71 LRDLIYWYLPTALLRGIFHNVPDSCFRQ 98 (101)
T ss_pred HHHHHHHhcchhhcccccCcCCcHHHHH
Confidence 33345555 455554 799999998774
No 27
>PF11241 DUF3043: Protein of unknown function (DUF3043); InterPro: IPR021403 Some members in this family of proteins with unknown function are annotated as membrane proteins. This cannot be confirmed.
Probab=54.73 E-value=26 Score=32.64 Aligned_cols=34 Identities=29% Similarity=0.352 Sum_probs=18.3
Q ss_pred HHHHHHHHHhhhhhhhchhhhhhhhccCCCcccc
Q 017674 189 AVVGPLFIGMIWNCVWGRRGLLGFVKKYPDTELR 222 (368)
Q Consensus 189 ~lf~~v~a~~iWN~~~~~~~i~rfl~r~Pdt~lr 222 (368)
++.+++++++|--++-+++.=..-..||||++-.
T Consensus 107 ~~~~~~~~~iid~~~l~r~vkk~v~~kFp~~~~~ 140 (170)
T PF11241_consen 107 AMYVLLLLVIIDGVILGRRVKKRVAEKFPDTTES 140 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCcCC
Confidence 3334444444554444455555566789995443
No 28
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=54.52 E-value=15 Score=27.57 Aligned_cols=21 Identities=10% Similarity=0.431 Sum_probs=10.4
Q ss_pred echhhHHHHHHHHHHHHHhhh
Q 017674 152 VSRAVAWVVMVVVAMGVMVGA 172 (368)
Q Consensus 152 vpk~vlw~vi~l~~~g~~aG~ 172 (368)
++-+...++++.|++|+++|.
T Consensus 16 ~~~pl~l~il~~f~~G~llg~ 36 (68)
T PF06305_consen 16 FPLPLGLLILIAFLLGALLGW 36 (68)
T ss_pred ccchHHHHHHHHHHHHHHHHH
Confidence 454444445555555555444
No 29
>PRK14762 membrane protein; Provisional
Probab=54.23 E-value=12 Score=25.56 Aligned_cols=16 Identities=19% Similarity=0.897 Sum_probs=13.5
Q ss_pred hhhHHHHHHHHHHHHH
Q 017674 154 RAVAWVVMVVVAMGVM 169 (368)
Q Consensus 154 k~vlw~vi~l~~~g~~ 169 (368)
|.++|++..+|..|++
T Consensus 2 ki~lw~i~iifligll 17 (27)
T PRK14762 2 KIILWAVLIIFLIGLL 17 (27)
T ss_pred eeHHHHHHHHHHHHHH
Confidence 5688999999999965
No 30
>PRK09109 motC flagellar motor protein; Reviewed
Probab=53.97 E-value=24 Score=33.78 Aligned_cols=56 Identities=9% Similarity=0.167 Sum_probs=37.7
Q ss_pred HHHHHHHHHHhhheeh------heehhHHHHHHHHHHHHHHHHHhhhhhhhc-hhhhhhhhcc
Q 017674 160 VMVVVAMGVMVGAFLM------VAVKKAVVLVAVAAVVGPLFIGMIWNCVWG-RRGLLGFVKK 215 (368)
Q Consensus 160 vi~l~~~g~~aG~f~l------~av~~~~ll~~~~~lf~~v~a~~iWN~~~~-~~~i~rfl~r 215 (368)
+.++++++.++++|++ .-++=+.++||+++-+++++..+-|+..+. -+.+...+++
T Consensus 7 iG~~~~~~~v~~~~~~~gg~~~~~~~~~~~lIV~Ggt~~a~~i~~~~~~~~~~~~~~~~~f~~ 69 (246)
T PRK09109 7 IGLILAFVAIIGGQVLEGGHLGSLLNGPAFLIVIGGTLGAVLLQTPLAVFKRAFKILRWVFFP 69 (246)
T ss_pred HHHHHHHHHHHHHHHhcCCChHHHhhHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHcc
Confidence 3444555555555554 337888899999999999888888877665 4445555544
No 31
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=53.84 E-value=18 Score=31.51 Aligned_cols=55 Identities=13% Similarity=0.251 Sum_probs=31.4
Q ss_pred echhhHHHHHHHHHHH---HHhhheehhee------hhHHHHHHHHHHHHHHH--HHhhhhhhhch
Q 017674 152 VSRAVAWVVMVVVAMG---VMVGAFLMVAV------KKAVVLVAVAAVVGPLF--IGMIWNCVWGR 206 (368)
Q Consensus 152 vpk~vlw~vi~l~~~g---~~aG~f~l~av------~~~~ll~~~~~lf~~v~--a~~iWN~~~~~ 206 (368)
.|.=.+++.+.|+++| +++|.+++..- |.+.+|++-..+|.+.+ ..++|.++.++
T Consensus 39 ~pwK~I~la~~Lli~G~~li~~g~l~~~~~i~~~~~~~~~llilG~L~fIPG~Y~~~i~y~a~rg~ 104 (115)
T PF05915_consen 39 IPWKSIALAVFLLIFGTVLIIIGLLLFFGHIDGDRDRGWALLILGILCFIPGFYHTRIAYYAWRGY 104 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCcccchHHHHHHHHHhccHHHHHHHHHHHcCC
Confidence 3445557777777777 45566665543 56666666666665543 23445554443
No 32
>PF11990 DUF3487: Protein of unknown function (DUF3487); InterPro: IPR021877 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 121 to 136 amino acids in length. This protein has a conserved RLN sequence motif.
Probab=53.17 E-value=28 Score=30.54 Aligned_cols=50 Identities=18% Similarity=0.266 Sum_probs=29.6
Q ss_pred eeeechhhHHHHHHHHHHHHHhhheehheehhHHHHHHHHHHHHHHHHHhhh
Q 017674 149 GFRVSRAVAWVVMVVVAMGVMVGAFLMVAVKKAVVLVAVAAVVGPLFIGMIW 200 (368)
Q Consensus 149 ~~~vpk~vlw~vi~l~~~g~~aG~f~l~av~~~~ll~~~~~lf~~v~a~~iW 200 (368)
|+..+-. .+++.+=+++|+++|.++......+ .++..++++.+++.+++.
T Consensus 20 GlT~~El-~~~a~~~~~~g~~~gl~la~~~g~~-a~~pt~~ll~~~~~v~~g 69 (121)
T PF11990_consen 20 GLTADEL-GLAAGVGFVAGLVVGLPLALLTGWW-AMIPTGALLGPILGVFVG 69 (121)
T ss_pred CCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHh
Confidence 4334433 3666677788888888876666554 345555555555544443
No 33
>PRK10862 SoxR reducing system protein RseC; Provisional
Probab=52.62 E-value=32 Score=30.89 Aligned_cols=58 Identities=19% Similarity=0.230 Sum_probs=29.1
Q ss_pred cceeeeee---echhhHHHHHHHHHHHHHhhheehheehhHHHHHHHHHHHHHHHHHhhhhh
Q 017674 144 EDVKVGFR---VSRAVAWVVMVVVAMGVMVGAFLMVAVKKAVVLVAVAAVVGPLFIGMIWNC 202 (368)
Q Consensus 144 ~~~~~~~~---vpk~vlw~vi~l~~~g~~aG~f~l~av~~~~ll~~~~~lf~~v~a~~iWN~ 202 (368)
++..+++. +=|+.+|+-++ =.++|++|+++...+..-.++.++.+++++++++++...
T Consensus 63 D~V~v~i~e~~llkaa~lvYll-PLl~li~ga~l~~~~~~~e~~~~~~~~~g~~~g~~~~r~ 123 (154)
T PRK10862 63 QKVELGIAEGSLLRSALLVYMT-PLVGLFLGAALFQLLFGSDLAALCGALLGGVGGFLLARG 123 (154)
T ss_pred CEEEEecchhhHHHHHHHHHHH-HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence 33445654 43444443221 112344444444333344667777777777776665543
No 34
>PRK13165 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=51.78 E-value=35 Score=31.57 Aligned_cols=18 Identities=39% Similarity=0.534 Sum_probs=15.7
Q ss_pred CCCCcEEEEEEEEEeccc
Q 017674 224 AIDGQYVKVTGVVTCGSI 241 (368)
Q Consensus 224 a~dGq~VKItG~VtCG~~ 241 (368)
+..|+.+.|-|.|.-|++
T Consensus 54 ~~~g~~iRvgG~V~~GSi 71 (160)
T PRK13165 54 PEVGQRLRVGGMVMPGSV 71 (160)
T ss_pred cCCCCEEEEeeEEeCCcE
Confidence 357999999999998886
No 35
>PF13779 DUF4175: Domain of unknown function (DUF4175)
Probab=51.03 E-value=22 Score=39.91 Aligned_cols=60 Identities=15% Similarity=0.161 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHhhheehhe-ehhHHHHHHHHHHHHHHHHHhhhhhhhc-hhhhhhhhccC
Q 017674 157 AWVVMVVVAMGVMVGAFLMVA-VKKAVVLVAVAAVVGPLFIGMIWNCVWG-RRGLLGFVKKY 216 (368)
Q Consensus 157 lw~vi~l~~~g~~aG~f~l~a-v~~~~ll~~~~~lf~~v~a~~iWN~~~~-~~~i~rfl~r~ 216 (368)
+|+|+.+|+.-..+|.|.+.. +-.|++|+++++++++.+..-+|.+.|- +.++++=|.+-
T Consensus 10 ~~~v~~lflal~~lGl~~~lp~~~~~~~l~~~~~a~~~al~~~lrrfr~Pt~~ea~~RLe~~ 71 (820)
T PF13779_consen 10 LLSVLALFLALSWLGLWDLLPDWLRWALLAAFAAAALAALVRGLRRFRWPTRAEALRRLERA 71 (820)
T ss_pred HHHHHHHHHHHHHHhHHHhccHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHhhh
Confidence 456666666667777776553 2333444433333333332334455554 66676666553
No 36
>PF05425 CopD: Copper resistance protein D; InterPro: IPR008457 Copper sequestering activity displayed by some bacteria is determined by copper-binding protein products of the copper resistance operon (cop). CopD, together with CopC, perform copper uptake into the cytoplasm [].; GO: 0016021 integral to membrane
Probab=51.01 E-value=31 Score=28.21 Aligned_cols=59 Identities=19% Similarity=0.098 Sum_probs=39.6
Q ss_pred eechhhHHHHHHHHHHHHHhhheehh---eehhH--HHHHHHHHHHHHHHHHhhhhhhhchhhh
Q 017674 151 RVSRAVAWVVMVVVAMGVMVGAFLMV---AVKKA--VVLVAVAAVVGPLFIGMIWNCVWGRRGL 209 (368)
Q Consensus 151 ~vpk~vlw~vi~l~~~g~~aG~f~l~---av~~~--~ll~~~~~lf~~v~a~~iWN~~~~~~~i 209 (368)
||++...|+++++++.|+..+...+. -+.+. .+|.+=.+++++++++-.+|.++-...+
T Consensus 6 rFs~~a~~av~~l~~TG~~~a~~~~~~~~l~~t~yG~~Ll~K~~L~~~~l~l~~~~~~~~~p~l 69 (105)
T PF05425_consen 6 RFSWIAWAAVAVLVVTGLVMAWLRLGFDALFTTPYGRLLLVKLALVLLMLALAAYNRFRLIPRL 69 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCchhhccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37788899999999999887766644 12222 3466666777777777777876543333
No 37
>PF03916 NrfD: Polysulphide reductase, NrfD; InterPro: IPR005614 NrfD is an integral transmembrane protein with loops in both the periplasm and the cytoplasm. NrfD is thought to participate in the transfer of electrons, from the quinone pool into the terminal components of the Nrf pathway [].
Probab=50.59 E-value=26 Score=33.59 Aligned_cols=33 Identities=27% Similarity=0.507 Sum_probs=23.1
Q ss_pred ccccCcceeeeeeechhhHHHHHHHHHHHHHhhheehhee
Q 017674 139 VTSLGEDVKVGFRVSRAVAWVVMVVVAMGVMVGAFLMVAV 178 (368)
Q Consensus 139 vt~l~~~~~~~~~vpk~vlw~vi~l~~~g~~aG~f~l~av 178 (368)
||++|++.-.| . |...-+|..|+.+|+|++++.
T Consensus 2 vt~~~~~~~WG--l-----~i~~y~f~~glaaG~~~~a~~ 34 (313)
T PF03916_consen 2 VTGMSDQVPWG--L-----PIAVYLFFGGLAAGAFLLASL 34 (313)
T ss_pred CCCCCCCCCcc--c-----HHHHHHHHHHHHHHHHHHHHH
Confidence 78888887666 2 445567777777887776554
No 38
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=49.87 E-value=16 Score=30.47 Aligned_cols=27 Identities=19% Similarity=0.417 Sum_probs=13.8
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhhhc
Q 017674 179 KKAVVLVAVAAVVGPLFIGMIWNCVWG 205 (368)
Q Consensus 179 ~~~~ll~~~~~lf~~v~a~~iWN~~~~ 205 (368)
|...++..++.+++++.|.++|.+.|.
T Consensus 2 ~~l~i~~iialiv~~iiaIvvW~iv~i 28 (81)
T PF00558_consen 2 QSLEILAIIALIVALIIAIVVWTIVYI 28 (81)
T ss_dssp ------HHHHHHHHHHHHHHHHHHH--
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444556666667777778888865543
No 39
>PF03597 CcoS: Cytochrome oxidase maturation protein cbb3-type; InterPro: IPR004714 Cytochrome cbb3 oxidases are found almost exclusively in Proteobacteria, and represent a distinctive class of proton-pumping respiratory haem-copper oxidases (HCO) that lack many of the key structural features that contribute to the reaction cycle of the intensely studied mitochondrial cytochrome c oxidase (CcO). Expression of cytochrome cbb3 oxidase allows human pathogens to colonise anoxic tissues and agronomically important diazotrophs to sustain nitrogen fixation []. Genes encoding a cytochrome cbb3 oxidase were initially designated fixNOQP (ccoNOQP), the ccoNOQP operon is always found close to a second gene cluster, known as fixGHIS (ccoGHIS) whose expression is necessary for the assembly of a functional cbb3 oxidase. On the basis of their derived amino acid sequences each of the four proteins encoded by the ccoGHIS operon are thought to be membrane-bound. It has been suggested that they may function in concert as a multi-subunit complex, possibly playing a role in the uptake and metabolism of copper required for the assembly of the binuclear centre of cytochrome cbb3 oxidase.
Probab=48.50 E-value=24 Score=26.28 Aligned_cols=21 Identities=5% Similarity=0.137 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHhhhhhh
Q 017674 183 VLVAVAAVVGPLFIGMIWNCV 203 (368)
Q Consensus 183 ll~~~~~lf~~v~a~~iWN~~ 203 (368)
++.+.+++.++++++|+|.+.
T Consensus 6 lip~sl~l~~~~l~~f~Wavk 26 (45)
T PF03597_consen 6 LIPVSLILGLIALAAFLWAVK 26 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHc
Confidence 444455555566667777663
No 40
>PF11712 Vma12: Endoplasmic reticulum-based factor for assembly of V-ATPase; InterPro: IPR021013 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. The yeast vacuolar proton-translocating ATPase (V-ATPase) is the best characterised member of the V-ATPase family. A total of thirteen genes are required for encoding the subunits of the enzyme complex itself and an additional three for providing factors necessary for the assembly of the whole. Vma12 is one of these latter, all three of which are localised to the endoplasmic reticulum [].
Probab=48.18 E-value=51 Score=28.83 Aligned_cols=49 Identities=14% Similarity=0.024 Sum_probs=28.4
Q ss_pred HHHHHHHHHHH-Hhhhee-hheehhHHHHHHHHHHHHHHHHHhhhhhhhch
Q 017674 158 WVVMVVVAMGV-MVGAFL-MVAVKKAVVLVAVAAVVGPLFIGMIWNCVWGR 206 (368)
Q Consensus 158 w~vi~l~~~g~-~aG~f~-l~av~~~~ll~~~~~lf~~v~a~~iWN~~~~~ 206 (368)
-.++..|+.|+ .++... -.-.+.=++|-+++++++++|=+.+++.|..+
T Consensus 87 vsv~~~~~~~~~~~~~~~~~~~~~~Rvllgl~~al~vlvAEv~l~~~y~~k 137 (142)
T PF11712_consen 87 VSVFAVFFAGWYWAGYSFGGWSFPYRVLLGLFGALLVLVAEVVLYIRYLRK 137 (142)
T ss_pred HHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444455554 333222 23445556777777777777777777777664
No 41
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=48.15 E-value=7.1 Score=32.74 Aligned_cols=17 Identities=29% Similarity=0.343 Sum_probs=9.4
Q ss_pred HHHHHHHhhhhhhhchh
Q 017674 191 VGPLFIGMIWNCVWGRR 207 (368)
Q Consensus 191 f~~v~a~~iWN~~~~~~ 207 (368)
++++++++.|-++++||
T Consensus 79 v~~lv~~l~w~f~~r~k 95 (96)
T PTZ00382 79 VGGLVGFLCWWFVCRGK 95 (96)
T ss_pred HHHHHHHHhheeEEeec
Confidence 33444556676666544
No 42
>PF06645 SPC12: Microsomal signal peptidase 12 kDa subunit (SPC12); InterPro: IPR009542 This family consists of several microsomal signal peptidase 12 kDa subunit proteins. Translocation of polypeptide chains across the endoplasmic reticulum (ER) membrane is triggered by signal sequences. Subsequently, signal recognition particle interacts with its membrane receptor and the ribosome-bound nascent chain is targeted to the ER where it is transferred into a protein-conducting channel. At some point, a second signal sequence recognition event takes place in the membrane and translocation of the nascent chain through the membrane occurs. The signal sequence of most secretory and membrane proteins is cleaved off at this stage. Cleavage occurs by the signal peptidase complex (SPC) as soon as the lumenal domain of the translocating polypeptide is large enough to expose its cleavage site to the enzyme. The signal peptidase complex is possibly also involved in proteolytic events in the ER membrane other than the processing of the signal sequence, for example the further digestion of the cleaved signal peptide or the degradation of membrane proteins. Mammalian signal peptidase is as a complex of five different polypeptide chains. This family represents the 12 kDa subunit (SPC12).; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=47.79 E-value=27 Score=28.18 Aligned_cols=49 Identities=10% Similarity=0.305 Sum_probs=35.2
Q ss_pred hhHHHHHHHHHHHHHhhheehheehhHHHHHHHHHHHHHHHHHhhhhhhh
Q 017674 155 AVAWVVMVVVAMGVMVGAFLMVAVKKAVVLVAVAAVVGPLFIGMIWNCVW 204 (368)
Q Consensus 155 ~vlw~vi~l~~~g~~aG~f~l~av~~~~ll~~~~~lf~~v~a~~iWN~~~ 204 (368)
..-+++++.+++||++| |+.--++..+...++++++++++.+=-|-+|.
T Consensus 12 l~~~il~~~~iisfi~G-y~~q~~~~~~~~~~~g~~~~~lv~vP~Wp~y~ 60 (76)
T PF06645_consen 12 LMQYILIISAIISFIVG-YITQSFSYTFYIYGAGVVLTLLVVVPPWPFYN 60 (76)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhheeCCcHhhc
Confidence 34455666777777776 56677788888888888888777777786653
No 43
>PF06374 NDUF_C2: NADH-ubiquinone oxidoreductase subunit b14.5b (NDUFC2); InterPro: IPR009423 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This family consists of several NADH-ubiquinone oxidoreductase subunit b14.5b proteins.; GO: 0008137 NADH dehydrogenase (ubiquinone) activity, 0006120 mitochondrial electron transport, NADH to ubiquinone, 0005743 mitochondrial inner membrane
Probab=46.93 E-value=54 Score=29.02 Aligned_cols=57 Identities=11% Similarity=0.271 Sum_probs=38.7
Q ss_pred HHHHHHHHHhhhe--------eh-heehhHHHHHHHHHHHHHHHHHhhhhhhhc--hhhhhhhhccCCC
Q 017674 161 MVVVAMGVMVGAF--------LM-VAVKKAVVLVAVAAVVGPLFIGMIWNCVWG--RRGLLGFVKKYPD 218 (368)
Q Consensus 161 i~l~~~g~~aG~f--------~l-~av~~~~ll~~~~~lf~~v~a~~iWN~~~~--~~~i~rfl~r~Pd 218 (368)
+.+..+|++++-+ ++ +.+|+-+|++.++..++-.+ .=..|++.. ++.++.+++.+|+
T Consensus 29 ~~~g~~G~~~~ll~N~~~rRP~~~sGihr~ll~~t~g~~~Gy~~-~k~~n~~~A~rD~~m~~YI~lHPE 96 (117)
T PF06374_consen 29 IWLGFLGFCTALLDNAINRRPPLKSGIHRQLLLATIGWFIGYYI-TKYRNYYYAERDADMRHYIKLHPE 96 (117)
T ss_pred HHHHHHHHHHHHHHHHHhcCCchhhccHHHHHHHHHHHHHHHHH-HHHHHHHHHHhchhHHHHHHhCcc
Confidence 4445566666544 34 67888888888777666554 233466655 8889999999986
No 44
>TIGR00847 ccoS cytochrome oxidase maturation protein, cbb3-type. CcoS from Rhodobacter capsulatus has been shown essential for incorporation of redox-active prosthetic groups (heme, Cu) into cytochrome cbb(3) oxidase. FixS of Bradyrhizobium japonicum appears to have the same function. Members of this family are found so far in organisms with a cbb3-type cytochrome oxidase, including Neisseria meningitidis, Helicobacter pylori, Campylobacter jejuni, Caulobacter crescentus, Bradyrhizobium japonicum, and Rhodobacter capsulatus.
Probab=46.00 E-value=29 Score=26.68 Aligned_cols=21 Identities=10% Similarity=0.229 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHhhhhhhh
Q 017674 184 LVAVAAVVGPLFIGMIWNCVW 204 (368)
Q Consensus 184 l~~~~~lf~~v~a~~iWN~~~ 204 (368)
+-+.+++.+..+++|+|.+.-
T Consensus 8 IpiSl~l~~~~l~~f~Wavk~ 28 (51)
T TIGR00847 8 IPISLLLGGVGLVAFLWSLKS 28 (51)
T ss_pred HHHHHHHHHHHHHHHHHHHcc
Confidence 334445555556677777643
No 45
>TIGR03818 MotA1 flagellar motor stator protein MotA. This model represents one family of MotA proteins which are often not identified by the "transporter, MotA/TolQ/ExbB proton channel family" model, pfam01618.
Probab=45.88 E-value=38 Score=33.37 Aligned_cols=45 Identities=22% Similarity=0.348 Sum_probs=32.0
Q ss_pred HHHHHHHHHhhheeh------heehhHHHHHHHHHHHHHHHHHhhhhhhhc
Q 017674 161 MVVVAMGVMVGAFLM------VAVKKAVVLVAVAAVVGPLFIGMIWNCVWG 205 (368)
Q Consensus 161 i~l~~~g~~aG~f~l------~av~~~~ll~~~~~lf~~v~a~~iWN~~~~ 205 (368)
.++++.|+++++|++ .-++=+.++||+++-+++++..+-++..+.
T Consensus 6 Gli~~~~~v~~g~~l~Gg~~~~l~~~~~~lIV~Ggtlga~lis~p~~~~~~ 56 (282)
T TIGR03818 6 GLVVVLGCVFGGYLLAGGHLAALWQPAELLIIGGAAIGAFIIANPPKVLKE 56 (282)
T ss_pred HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 344455555555554 347888899999999999988888876665
No 46
>PRK06743 flagellar motor protein MotP; Reviewed
Probab=45.61 E-value=28 Score=33.92 Aligned_cols=28 Identities=4% Similarity=0.229 Sum_probs=24.3
Q ss_pred ehhHHHHHHHHHHHHHHHHHhhhhhhhc
Q 017674 178 VKKAVVLVAVAAVVGPLFIGMIWNCVWG 205 (368)
Q Consensus 178 v~~~~ll~~~~~lf~~v~a~~iWN~~~~ 205 (368)
||=+.++||+++-+++++..+=++..+.
T Consensus 28 ~~~~~~lIV~GGt~ga~li~~p~~~i~~ 55 (254)
T PRK06743 28 LDVSSILIVIGGTTATIVVAYRFGEIKK 55 (254)
T ss_pred hCHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 7888999999999999998888877765
No 47
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=45.41 E-value=18 Score=28.99 Aligned_cols=30 Identities=27% Similarity=0.371 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHhhhhhhhchhhhhhhhccCCC
Q 017674 184 LVAVAAVVGPLFIGMIWNCVWGRRGLLGFVKKYPD 218 (368)
Q Consensus 184 l~~~~~lf~~v~a~~iWN~~~~~~~i~rfl~r~Pd 218 (368)
+++++.+.++++++|+ .|+-...+|++.|-
T Consensus 2 ~iilali~G~~~Gff~-----ar~~~~k~l~~NPp 31 (64)
T PF03672_consen 2 LIILALIVGAVIGFFI-----ARKYMEKQLKENPP 31 (64)
T ss_pred hHHHHHHHHHHHHHHH-----HHHHHHHHHHHCCC
Confidence 4555556666665544 47777888888875
No 48
>PRK13150 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=44.78 E-value=52 Score=30.43 Aligned_cols=18 Identities=39% Similarity=0.569 Sum_probs=15.8
Q ss_pred CCCCcEEEEEEEEEeccc
Q 017674 224 AIDGQYVKVTGVVTCGSI 241 (368)
Q Consensus 224 a~dGq~VKItG~VtCG~~ 241 (368)
...|+.+.|-|.|.-|++
T Consensus 54 ~~~g~~iRvgG~V~~GSv 71 (159)
T PRK13150 54 PAVGQRLRVGGMVMPGSV 71 (159)
T ss_pred cCCCCEEEEeeEEeCCcE
Confidence 457999999999999987
No 49
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=44.38 E-value=33 Score=25.21 Aligned_cols=26 Identities=8% Similarity=0.367 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhchh
Q 017674 182 VVLVAVAAVVGPLFIGMIWNCVWGRR 207 (368)
Q Consensus 182 ~ll~~~~~lf~~v~a~~iWN~~~~~~ 207 (368)
|+..|++++...+...|+|.+|++|.
T Consensus 8 IIv~V~vg~~iiii~~~~YaCcykk~ 33 (38)
T PF02439_consen 8 IIVAVVVGMAIIIICMFYYACCYKKH 33 (38)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 34445555556666677778887754
No 50
>TIGR01116 ATPase-IIA1_Ca sarco/endoplasmic reticulum calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1, the latter of which is modelled by TIGR01522.
Probab=42.31 E-value=62 Score=36.32 Aligned_cols=80 Identities=9% Similarity=0.141 Sum_probs=41.8
Q ss_pred echhhHHHHHHHHHHHHHhhheeh--heehhHHHHHHHHHHHHHHHHHhhhhhhhchhhhhhhhccCCCcccccCCCCcE
Q 017674 152 VSRAVAWVVMVVVAMGVMVGAFLM--VAVKKAVVLVAVAAVVGPLFIGMIWNCVWGRRGLLGFVKKYPDTELRGAIDGQY 229 (368)
Q Consensus 152 vpk~vlw~vi~l~~~g~~aG~f~l--~av~~~~ll~~~~~lf~~v~a~~iWN~~~~~~~i~rfl~r~Pdt~lr~a~dGq~ 229 (368)
|-.++.|++++.++.-++.|.... -...+|+.-+++++++.+.+++-.|.-+..++.+....+..|+ ...-.|||+.
T Consensus 5 f~~~~~~iL~~aa~ls~~~~~~~~~~~~~~~~~~~~~Il~vi~~~~~i~~~qe~~a~~~~~~L~~~~~~-~~~ViRdg~~ 83 (917)
T TIGR01116 5 FEDLLVRILLLAACVSFVLAWFEEGEETVTAFVEPFVILLILVANAIVGVWQERNAEKAIEALKEYESE-HAKVLRDGRW 83 (917)
T ss_pred HhCHHHHHHHHHHHHHHHHhcccccccccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC-ceEEEECCEE
Confidence 334566666666666666653321 1123554444444444445555566766667776665554443 2334455555
Q ss_pred EEE
Q 017674 230 VKV 232 (368)
Q Consensus 230 VKI 232 (368)
++|
T Consensus 84 ~~I 86 (917)
T TIGR01116 84 SVI 86 (917)
T ss_pred EEE
Confidence 555
No 51
>COG3197 FixS Uncharacterized protein, possibly involved in nitrogen fixation [Inorganic ion transport and metabolism]
Probab=41.84 E-value=28 Score=27.61 Aligned_cols=20 Identities=5% Similarity=0.152 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHhhhhh
Q 017674 183 VLVAVAAVVGPLFIGMIWNC 202 (368)
Q Consensus 183 ll~~~~~lf~~v~a~~iWN~ 202 (368)
++-|.++++++++++|.|..
T Consensus 7 Lipvsi~l~~v~l~~flWav 26 (58)
T COG3197 7 LIPVSILLGAVGLGAFLWAV 26 (58)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 44455566666666777755
No 52
>PF11808 DUF3329: Domain of unknown function (DUF3329); InterPro: IPR021766 This family of proteins are functionally uncharacterised. This family is only found in bacteria. ; GO: 0004673 protein histidine kinase activity
Probab=41.45 E-value=89 Score=25.57 Aligned_cols=21 Identities=10% Similarity=0.216 Sum_probs=11.0
Q ss_pred HHHhhhhhhhchhhhhhhhccC
Q 017674 195 FIGMIWNCVWGRRGLLGFVKKY 216 (368)
Q Consensus 195 ~a~~iWN~~~~~~~i~rfl~r~ 216 (368)
++.++|+++.= ..+.+.+++-
T Consensus 38 ~~~l~wh~~~l-~rL~~WL~~~ 58 (90)
T PF11808_consen 38 LLYLFWHLYQL-YRLERWLRNP 58 (90)
T ss_pred HHHHHHHHHHH-HHHHHHHhCC
Confidence 34556765432 3466666543
No 53
>KOG0887 consensus 60S ribosomal protein L35A/L37 [Translation, ribosomal structure and biogenesis]
Probab=40.94 E-value=20 Score=31.62 Aligned_cols=47 Identities=30% Similarity=0.475 Sum_probs=35.5
Q ss_pred CCCcEEEEEEEEEeccccccCccCCCCceeEEeeeEEEecCCCCCCCCCCcccccccce
Q 017674 225 IDGQYVKVTGVVTCGSIPLESSYQRVPRCVYVSTELHEYKGCGGKPANPKHRCFSWGSR 283 (368)
Q Consensus 225 ~dGq~VKItG~VtCG~~PLess~qkv~rCVYtst~LyE~rgw~~k~an~kh~~f~W~lr 283 (368)
++-.++||.|+ ...=|++|-.-.||+|.+-.=.+-|+ ++.+-.||..
T Consensus 29 ~~t~llkIEGv----~skeEa~fYlGkR~~yvYKa~~~~~~--------~k~RvIWGkV 75 (111)
T KOG0887|consen 29 PNTSLLKIEGV----YSKEEASFYLGKRCVYVYKAKPEVRG--------SKTRVIWGKV 75 (111)
T ss_pred CCcEEEEEecc----cchhhhheeecCcEEEEEecCCCCCC--------ceEEEEEEEE
Confidence 34458999997 45678999999999998765544444 7888889864
No 54
>PRK09110 flagellar motor protein MotA; Validated
Probab=40.79 E-value=47 Score=32.83 Aligned_cols=53 Identities=19% Similarity=0.379 Sum_probs=35.5
Q ss_pred HHHHHHHHHhhheeh------heehhHHHHHHHHHHHHHHHHHhhhhhhhc-hhhhhhhh
Q 017674 161 MVVVAMGVMVGAFLM------VAVKKAVVLVAVAAVVGPLFIGMIWNCVWG-RRGLLGFV 213 (368)
Q Consensus 161 i~l~~~g~~aG~f~l------~av~~~~ll~~~~~lf~~v~a~~iWN~~~~-~~~i~rfl 213 (368)
.++++.|+++|+|++ +-+|-+.+|||+++.+++++..+=++.... -+.+.+-+
T Consensus 6 Gli~~~~~i~~g~~l~gg~~~~l~~~~~~lIV~Ggtlga~lv~~p~~~i~~~~k~~~~~f 65 (283)
T PRK09110 6 GYIVVLGSVFGGYLLAGGHLGALIQPAELLIIGGAALGAFIVGNPGKAIKATLKALPKLF 65 (283)
T ss_pred HHHHHHHHHHHHHHHcCCChhHhhchhHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 344455555555554 348888999999999999988888877665 33333333
No 55
>PRK08124 flagellar motor protein MotA; Validated
Probab=40.14 E-value=56 Score=31.69 Aligned_cols=45 Identities=11% Similarity=0.254 Sum_probs=31.4
Q ss_pred HHHHHHHHHhhheeh------heehhHHHHHHHHHHHHHHHHHhhhhhhhc
Q 017674 161 MVVVAMGVMVGAFLM------VAVKKAVVLVAVAAVVGPLFIGMIWNCVWG 205 (368)
Q Consensus 161 i~l~~~g~~aG~f~l------~av~~~~ll~~~~~lf~~v~a~~iWN~~~~ 205 (368)
.+++++|.+++++++ .-||=+.+|||+++.+++++..+-++..+.
T Consensus 8 G~~~~~~~i~~g~~~~gg~~~~~~~~~~~lIV~Ggt~~a~~i~~~~~~~~~ 58 (263)
T PRK08124 8 GLILGLIAVVVGMVVKGASLAVLLNPAAILIIIVGTIAAVMIAFPMSELKK 58 (263)
T ss_pred HHHHHHHHHHHHHHhcCCChHHHhhHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 344445555544444 447888899999999999888888866665
No 56
>PRK12482 flagellar motor protein MotA; Provisional
Probab=39.72 E-value=54 Score=32.64 Aligned_cols=46 Identities=20% Similarity=0.398 Sum_probs=33.2
Q ss_pred HHHHHHHHHHhhheeh------heehhHHHHHHHHHHHHHHHHHhhhhhhhc
Q 017674 160 VMVVVAMGVMVGAFLM------VAVKKAVVLVAVAAVVGPLFIGMIWNCVWG 205 (368)
Q Consensus 160 vi~l~~~g~~aG~f~l------~av~~~~ll~~~~~lf~~v~a~~iWN~~~~ 205 (368)
+.+++++|+++++|++ .-+|=+.++||+++-+++++..+=|+....
T Consensus 5 iGlv~~~~~v~~g~~l~Gg~~~~~~~~~~~lIV~GGt~ga~lis~p~~~~~~ 56 (287)
T PRK12482 5 FGLLVVMGCVFGGYLMSGGSLSSIWQPGEIIIILGAGIGAMILGNPKSVLKE 56 (287)
T ss_pred HHHHHHHHHHHHHHHHhCCChHHHHhHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 3455566666666555 337778899999999999988888876665
No 57
>PRK13159 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=39.40 E-value=42 Score=30.93 Aligned_cols=18 Identities=39% Similarity=0.505 Sum_probs=14.9
Q ss_pred CCCCcEEEEEEEEEeccc
Q 017674 224 AIDGQYVKVTGVVTCGSI 241 (368)
Q Consensus 224 a~dGq~VKItG~VtCG~~ 241 (368)
.+.++.++|-|.|.-|++
T Consensus 48 ~~~~~~~RlGG~V~~GSv 65 (155)
T PRK13159 48 AAGYQQFRLGGMVKAGSI 65 (155)
T ss_pred cccCCeEEEccEEecCcE
Confidence 456789999999998876
No 58
>PF03419 Peptidase_U4: Sporulation factor SpoIIGA This family belongs to family U4 of the peptidase classification.; InterPro: IPR005081 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This group of peptidases belong to the MEROPS peptidase family U4 (SpoIIGA peptidase family, clan U-). Sporulation in bacteria such as Bacillus subtilis involves the formation of a polar septum, which divides the sporangium into a mother cell and a forespore. The sigma E factor, which is encoded within the spoIIG operon, is a cell-specific regulatory protein that directs gene transcription in the mother cell. Sigma E is synthesised as an inactive proprotein pro-sigma E, which is converted to the mature factor by the putative processing enzyme SpoIIGA []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis, 0030436 asexual sporulation
Probab=38.95 E-value=1e+02 Score=29.81 Aligned_cols=42 Identities=17% Similarity=0.261 Sum_probs=35.7
Q ss_pred cccCCCCcEEEEEEEEEeccccccCccCCCCceeEEeeeEEEe
Q 017674 221 LRGAIDGQYVKVTGVVTCGSIPLESSYQRVPRCVYVSTELHEY 263 (368)
Q Consensus 221 lr~a~dGq~VKItG~VtCG~~PLess~qkv~rCVYtst~LyE~ 263 (368)
+.--.+|+.++++|.+-=||. |..|+++.|=||-....+++.
T Consensus 160 v~i~~~~~~~~~~allDTGN~-L~DPitg~PV~Vve~~~~~~~ 201 (293)
T PF03419_consen 160 VTIEIGGKKIELKALLDTGNQ-LRDPITGRPVIVVEYEALEKL 201 (293)
T ss_pred EEEEECCEEEEEEEEEECCCc-ccCCCCCCcEEEEEHHHHHhh
Confidence 344578999999999999996 788999999999888877777
No 59
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=38.29 E-value=61 Score=28.77 Aligned_cols=45 Identities=11% Similarity=0.206 Sum_probs=24.1
Q ss_pred eeeeechhhHHHHHHHHH-HHHHhhheehheehhHHHHHHHHHHHH
Q 017674 148 VGFRVSRAVAWVVMVVVA-MGVMVGAFLMVAVKKAVVLVAVAAVVG 192 (368)
Q Consensus 148 ~~~~vpk~vlw~vi~l~~-~g~~aG~f~l~av~~~~ll~~~~~lf~ 192 (368)
|+=++-|.=.|++.++|+ |++..++++.-+.+....+..++++++
T Consensus 4 ~~~KiN~~R~~al~lif~g~~vmy~gi~f~~~~~im~ifmllG~L~ 49 (114)
T PF11023_consen 4 YSSKINKIRTFALSLIFIGMIVMYIGIFFKASPIIMVIFMLLGLLA 49 (114)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHHH
Confidence 333455666788877764 666666665544333333333333333
No 60
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=37.80 E-value=97 Score=27.52 Aligned_cols=56 Identities=16% Similarity=0.227 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHhhheeh--h-----eehhHHHHHHHHHHHHHHHHHhhhhhhhchhhhhhhh
Q 017674 158 WVVMVVVAMGVMVGAFLM--V-----AVKKAVVLVAVAAVVGPLFIGMIWNCVWGRRGLLGFV 213 (368)
Q Consensus 158 w~vi~l~~~g~~aG~f~l--~-----av~~~~ll~~~~~lf~~v~a~~iWN~~~~~~~i~rfl 213 (368)
|-...+..++|++|...- . .......|.++++++++++..++|+-+..-..+..|-
T Consensus 21 ~ysyfl~~~~l~Lg~~~~~~~~~~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~~~~~l~~~~ 83 (193)
T PF11846_consen 21 WYSYFLWPFALLLGLLPDPARRLRRIPRSLAFALRAAALLIALAALGFMLTDYHTNEQLTRFE 83 (193)
T ss_pred HHHHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 555555566666665544 1 2222345556677777777788887766655555554
No 61
>PF06703 SPC25: Microsomal signal peptidase 25 kDa subunit (SPC25); InterPro: IPR009582 This family consists of several microsomal signal peptidase 25 kDa subunit proteins. Translocation of polypeptide chains across the endoplasmic reticulum (ER) membrane is triggered by signal sequences. Subsequently, signal recognition particle interacts with its membrane receptor and the ribosome-bound nascent chain is targeted to the ER where it is transferred into a protein-conducting channel. At some point, a second signal sequence recognition event takes place in the membrane and translocation of the nascent chain through the membrane occurs. The signal sequence of most secretory and membrane proteins is cleaved off at this stage. Cleavage occurs by the signal peptidase complex (SPC) as soon as the lumenal domain of the translocating polypeptide is large enough to expose its cleavage site to the enzyme. The signal peptidase complex is possibly also involved in proteolytic events in the ER membrane other than the processing of the signal sequence, for example the further digestion of the cleaved signal peptide or the degradation of membrane proteins. Mammalian signal peptidase is as a complex of five different polypeptide chains [].; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=37.27 E-value=2.9e+02 Score=24.36 Aligned_cols=48 Identities=10% Similarity=0.036 Sum_probs=27.1
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhhhchhhhhhhhccCCCcccccCCCCcEEEEE
Q 017674 180 KAVVLVAVAAVVGPLFIGMIWNCVWGRRGLLGFVKKYPDTELRGAIDGQYVKVT 233 (368)
Q Consensus 180 ~~~ll~~~~~lf~~v~a~~iWN~~~~~~~i~rfl~r~Pdt~lr~a~dGq~VKIt 233 (368)
..++++.|++=|++-.++.+|+.++-+..+.-..++-+ ...++.+.|.
T Consensus 56 ~~~~~~~v~~YfiLs~il~~~~~~~ek~~~~~g~~~~~------~~~~~~i~i~ 103 (162)
T PF06703_consen 56 KPYLIICVILYFILSGILTLYSYFVEKDIFYVGKRKDG------SSSGEKITIS 103 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeccCC------CCCCCEEEEE
Confidence 34444444444555555666687776776665555433 3455666665
No 62
>PRK08990 flagellar motor protein PomA; Reviewed
Probab=37.16 E-value=70 Score=31.08 Aligned_cols=40 Identities=13% Similarity=0.240 Sum_probs=28.2
Q ss_pred HHHHhhheehheehhHHHHHHHHHHHHHHHHHhhhhhhhc
Q 017674 166 MGVMVGAFLMVAVKKAVVLVAVAAVVGPLFIGMIWNCVWG 205 (368)
Q Consensus 166 ~g~~aG~f~l~av~~~~ll~~~~~lf~~v~a~~iWN~~~~ 205 (368)
.|++.|+=+..-|+=+.++||+++-+++++..+.+.-.++
T Consensus 18 ~g~~~gg~~~~l~~~~~~lIV~GGt~ga~l~~~~~~~~~~ 57 (254)
T PRK08990 18 MAMVLGGGIGMFVDVPSILIVFGGSLFVVLMKFNLGQFFG 57 (254)
T ss_pred HHHHhcCcHHHHhCHHHHHHHHHHHHHHHHhhccHHHHHH
Confidence 3455555555568888899999999888886666654444
No 63
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=36.40 E-value=32 Score=31.79 Aligned_cols=31 Identities=13% Similarity=0.116 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHhhhhhhhchhhhhhhhccC
Q 017674 185 VAVAAVVGPLFIGMIWNCVWGRRGLLGFVKKY 216 (368)
Q Consensus 185 ~~~~~lf~~v~a~~iWN~~~~~~~i~rfl~r~ 216 (368)
+|++++.+++++.|+..+|+.|+. .|..|||
T Consensus 99 ~Vl~g~s~l~i~yfvir~~R~r~~-~rktRkY 129 (163)
T PF06679_consen 99 YVLVGLSALAILYFVIRTFRLRRR-NRKTRKY 129 (163)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccc-cccceee
Confidence 455667777777888888877552 2444555
No 64
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=35.48 E-value=86 Score=31.14 Aligned_cols=9 Identities=0% Similarity=0.434 Sum_probs=5.1
Q ss_pred eehheehhH
Q 017674 173 FLMVAVKKA 181 (368)
Q Consensus 173 f~l~av~~~ 181 (368)
.++.+|-++
T Consensus 27 yv~i~~~~~ 35 (398)
T PRK10747 27 YVLIQTDNY 35 (398)
T ss_pred eEEEEECCE
Confidence 556665554
No 65
>PRK14992 tetrathionate reductase subunit C; Provisional
Probab=35.40 E-value=57 Score=33.07 Aligned_cols=23 Identities=22% Similarity=0.385 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHhhheehheeh
Q 017674 157 AWVVMVVVAMGVMVGAFLMVAVK 179 (368)
Q Consensus 157 lw~vi~l~~~g~~aG~f~l~av~ 179 (368)
.|++.-+|..|+.+|+|++++.+
T Consensus 16 ~~iv~YlFl~GlaaGa~lla~~~ 38 (335)
T PRK14992 16 PWAVQYFFFIGIAACAALFACYL 38 (335)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 48899999999999999998763
No 66
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=35.34 E-value=19 Score=41.32 Aligned_cols=16 Identities=63% Similarity=0.916 Sum_probs=14.4
Q ss_pred ccccCCceeEeCCCCc
Q 017674 7 SHQLSSGLYVSGRPEQ 22 (368)
Q Consensus 7 sHqlsnGlyVSGrpeq 22 (368)
-|||.|||||+|+|-|
T Consensus 1199 qH~Lps~l~v~~qp~q 1214 (1387)
T KOG1016|consen 1199 QHQLPSGLYVKLQPGQ 1214 (1387)
T ss_pred ccccCccceEecCCcc
Confidence 5999999999999874
No 67
>PF05934 MCLC: Mid-1-related chloride channel (MCLC); InterPro: IPR009231 This entry consists of several Chloride channel CLIC-like proteins, which function as a chloride channel when incorporated in the planar lipid bilayer [].
Probab=34.84 E-value=58 Score=35.36 Aligned_cols=85 Identities=11% Similarity=0.028 Sum_probs=41.0
Q ss_pred CCCCCCCCCCCCCccccccccccccCcceeeeeeechhhHHHHHHHHHHHHHhhheehheehhHHHHHHHHHHHHHHHHH
Q 017674 118 SGQLDYSGSGSGSVKAGYGSAVTSLGEDVKVGFRVSRAVAWVVMVVVAMGVMVGAFLMVAVKKAVVLVAVAAVVGPLFIG 197 (368)
Q Consensus 118 Sg~l~~~~s~~~~~~~~~~~avt~l~~~~~~~~~vpk~vlw~vi~l~~~g~~aG~f~l~av~~~~ll~~~~~lf~~v~a~ 197 (368)
+|-||.+-|.-.-....|..-.=.-.-||-||+..--....++.+|.++.++| +-|...-.|...+.-..++.+++ -
T Consensus 146 ~gaLddALs~iLin~k~hd~e~wkwrfeD~fGVD~~t~l~v~l~lL~IV~iVA--teLwt~V~W~~Ql~R~fvisFLi-S 222 (549)
T PF05934_consen 146 PGALDDALSDILINFKPHDYEAWKWRFEDTFGVDPYTVLMVLLCLLCIVAIVA--TELWTYVSWFTQLRRMFVISFLI-S 222 (549)
T ss_pred cchHHHHHHHHhhcCCcchhHHhhhhhccccCCchhHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 66666655522222222332222235677888764333322333444444443 44444445555544444444444 6
Q ss_pred hhhhhhhc
Q 017674 198 MIWNCVWG 205 (368)
Q Consensus 198 ~iWN~~~~ 205 (368)
|+||.++=
T Consensus 223 ~~WNWiyL 230 (549)
T PF05934_consen 223 FGWNWIYL 230 (549)
T ss_pred HHHHHHHH
Confidence 78887664
No 68
>PF01988 VIT1: VIT family; InterPro: IPR008217 Proteins containing this entry have no known function and are predicted to be integral membrane proteins. They include the Ccc1 protein from Saccharomyces cerevisiae (Baker's yeast) (P47818 from SWISSPROT) that may have a role in regulating calcium levels [].
Probab=34.50 E-value=75 Score=29.35 Aligned_cols=16 Identities=13% Similarity=0.588 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHhhhe
Q 017674 158 WVVMVVVAMGVMVGAF 173 (368)
Q Consensus 158 w~vi~l~~~g~~aG~f 173 (368)
|.-.+.-..++++|++
T Consensus 132 ~~~al~~~~sf~lg~l 147 (213)
T PF01988_consen 132 WKAALATFLSFILGGL 147 (213)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5555666666666664
No 69
>COG1291 MotA Flagellar motor component [Cell motility and secretion]
Probab=33.58 E-value=31 Score=34.22 Aligned_cols=50 Identities=16% Similarity=0.222 Sum_probs=39.0
Q ss_pred ehheehhHHHHHHHHHHHHHHHHHhhhhhhhc-hhhhhhhhccCCCccccc
Q 017674 174 LMVAVKKAVVLVAVAAVVGPLFIGMIWNCVWG-RRGLLGFVKKYPDTELRG 223 (368)
Q Consensus 174 ~l~av~~~~ll~~~~~lf~~v~a~~iWN~~~~-~~~i~rfl~r~Pdt~lr~ 223 (368)
+.+-+|=+.++|++++.++++...+=++.... -+.+...++++...++.+
T Consensus 27 ~~~l~~~~s~lII~gg~i~A~~~~~p~~~vk~~~k~~~~~F~~~k~~~~~~ 77 (266)
T COG1291 27 LGALIQPSSLLIIVGGGIGAFMVGNPGKVVKATPKALKEAFRKPKKEDYVD 77 (266)
T ss_pred eeeeeccchhheeechhhHHHHhcCcHHHHHHHHHHHHHHHhcCchhhHHH
Confidence 66678899999999999888888888888777 666777777777565543
No 70
>COG2332 CcmE Cytochrome c-type biogenesis protein CcmE [Posttranslational modification, protein turnover, chaperones]
Probab=33.57 E-value=74 Score=29.53 Aligned_cols=57 Identities=25% Similarity=0.337 Sum_probs=36.7
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhhhchhhhhhhhccCCCcccc--cCCCCcEEEEEEEEEeccc
Q 017674 179 KKAVVLVAVAAVVGPLFIGMIWNCVWGRRGLLGFVKKYPDTELR--GAIDGQYVKVTGVVTCGSI 241 (368)
Q Consensus 179 ~~~~ll~~~~~lf~~v~a~~iWN~~~~~~~i~rfl~r~Pdt~lr--~a~dGq~VKItG~VtCG~~ 241 (368)
+++.+++++++.+++++.+.+||. +..|-=| |+-++|. ....||-+.+-|-|.-|++
T Consensus 7 ~Rl~~il~~~a~l~~a~~l~Lyal---~~ni~~f---y~Psel~~~~~~~G~rlR~GGlV~~GSv 65 (153)
T COG2332 7 KRLWIILAGLAGLALAVGLVLYAL---RSNIDYF---YTPSELLEGKVETGQRLRLGGLVEAGSV 65 (153)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhh---ccCceEE---ECHHHhccccccCCcEEEEeeeEeeceE
Confidence 345666666666777777777766 3333222 3444554 3455899999999998864
No 71
>COG1585 Membrane protein implicated in regulation of membrane protease activity [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=33.56 E-value=1.8e+02 Score=26.03 Aligned_cols=24 Identities=4% Similarity=0.296 Sum_probs=12.5
Q ss_pred hHHHHHHHHHHH--HHhhheehheeh
Q 017674 156 VAWVVMVVVAMG--VMVGAFLMVAVK 179 (368)
Q Consensus 156 vlw~vi~l~~~g--~~aG~f~l~av~ 179 (368)
..|.++.++... ++.++|++..+.
T Consensus 6 ~~wli~g~~ll~~E~l~~~~~ll~~g 31 (140)
T COG1585 6 WIWLILGLLLLIAEILGPGVFLLWLG 31 (140)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 345554444333 556666665555
No 72
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=33.47 E-value=30 Score=29.69 Aligned_cols=26 Identities=12% Similarity=0.107 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHhhhhhhhchhhhhh
Q 017674 186 AVAAVVGPLFIGMIWNCVWGRRGLLG 211 (368)
Q Consensus 186 ~~~~lf~~v~a~~iWN~~~~~~~i~r 211 (368)
++++++++++.+|+.-+|+.||...+
T Consensus 4 l~~iii~~i~l~~~~~~~~~rRR~r~ 29 (130)
T PF12273_consen 4 LFAIIIVAILLFLFLFYCHNRRRRRR 29 (130)
T ss_pred eHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34444555554444466666666654
No 73
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=33.41 E-value=60 Score=23.70 Aligned_cols=33 Identities=6% Similarity=-0.038 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHhhhhhhhchhhhhhhhccC
Q 017674 184 LVAVAAVVGPLFIGMIWNCVWGRRGLLGFVKKY 216 (368)
Q Consensus 184 l~~~~~lf~~v~a~~iWN~~~~~~~i~rfl~r~ 216 (368)
.+..+.++++-+++++|.+..+++.-..-.++.
T Consensus 12 ~~~~v~~~~~F~gi~~w~~~~~~k~~~e~aa~l 44 (49)
T PF05545_consen 12 SIGTVLFFVFFIGIVIWAYRPRNKKRFEEAANL 44 (49)
T ss_pred HHHHHHHHHHHHHHHHHHHcccchhhHHHHHcc
Confidence 344444455555566666644444433333333
No 74
>COG0811 TolQ Biopolymer transport proteins [Intracellular trafficking and secretion]
Probab=33.37 E-value=43 Score=31.37 Aligned_cols=23 Identities=4% Similarity=0.101 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhc
Q 017674 183 VLVAVAAVVGPLFIGMIWNCVWG 205 (368)
Q Consensus 183 ll~~~~~lf~~v~a~~iWN~~~~ 205 (368)
|+.-+++||+++.|+++||++.+
T Consensus 167 L~aTA~GL~vAIPAvi~yn~l~r 189 (216)
T COG0811 167 LIATAIGLFVAIPAVVAYNVLRR 189 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55668899999999999999877
No 75
>TIGR01523 ATPase-IID_K-Na potassium and/or sodium efflux P-type ATPase, fungal-type. The Leishmania sequence (GP|3192903), which falls between trusted and noise in this model, may very well turn out to be an active potassium pump.
Probab=32.80 E-value=1e+02 Score=35.52 Aligned_cols=53 Identities=6% Similarity=-0.031 Sum_probs=25.0
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhhhchhhhhhhhccCCCcccccCCCCcEEEE
Q 017674 179 KKAVVLVAVAAVVGPLFIGMIWNCVWGRRGLLGFVKKYPDTELRGAIDGQYVKV 232 (368)
Q Consensus 179 ~~~~ll~~~~~lf~~v~a~~iWN~~~~~~~i~rfl~r~Pdt~lr~a~dGq~VKI 232 (368)
..|+--+++++++.+.+++-.|+-++.++.+.. |++.-...-.-.|||+...|
T Consensus 79 ~~~~~~~iIl~vv~in~~i~~~QE~~aekal~a-L~~l~~~~~~ViRdg~~~~I 131 (1053)
T TIGR01523 79 HDWIEGGVISAIIALNILIGFIQEYKAEKTMDS-LKNLASPMAHVIRNGKSDAI 131 (1053)
T ss_pred hhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-HhccCCCceEEEeCCeeeec
Confidence 344443344444444444445566666666554 44433333344455554444
No 76
>PF11292 DUF3093: Protein of unknown function (DUF3093); InterPro: IPR021443 This family of proteins with unknown function appears to be restricted to Actinobacteria. Some members are annotated as alanine rich membrane proteins however this cannot be confirmed.
Probab=32.68 E-value=97 Score=28.17 Aligned_cols=41 Identities=10% Similarity=0.192 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHhhheehheehhHHHHHHHHHHHHHHHHHhh
Q 017674 158 WVVMVVVAMGVMVGAFLMVAVKKAVVLVAVAAVVGPLFIGMI 199 (368)
Q Consensus 158 w~vi~l~~~g~~aG~f~l~av~~~~ll~~~~~lf~~v~a~~i 199 (368)
|-++.+++.|+++..+.+..-.-+.. +++++++++++++++
T Consensus 13 wW~~~~~~~~~~~~~v~~~~~~~~~~-i~~~~~~~~~~~~l~ 53 (143)
T PF11292_consen 13 WWLAAAAVAALLAAEVVLGPPSLWAW-IPYAVVVAVAVWALL 53 (143)
T ss_pred HHHHHHHHHHHHHHhhhcCcchHHHH-HHHHHHHHHHHHHHH
Confidence 44444444677777666655543333 333333433333333
No 77
>PRK10490 sensor protein KdpD; Provisional
Probab=32.35 E-value=34 Score=38.17 Aligned_cols=15 Identities=13% Similarity=0.215 Sum_probs=7.4
Q ss_pred HHHHHHHHhhhhhhh
Q 017674 190 VVGPLFIGMIWNCVW 204 (368)
Q Consensus 190 lf~~v~a~~iWN~~~ 204 (368)
++++++++++||++|
T Consensus 449 i~aavls~l~~nfFF 463 (895)
T PRK10490 449 VVATVINVASFDLFF 463 (895)
T ss_pred HHHHHHHHHHHHhee
Confidence 444444555555544
No 78
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=32.03 E-value=38 Score=23.61 Aligned_cols=17 Identities=12% Similarity=0.440 Sum_probs=14.8
Q ss_pred CHHHHHHHhhcCCCCcC
Q 017674 333 SPSFLRWLADRNLSSDD 349 (368)
Q Consensus 333 S~~f~~WL~erNlSsd~ 349 (368)
..+|+.||.++|+....
T Consensus 6 ~~~L~~wL~~~gi~~~~ 22 (38)
T PF10281_consen 6 DSDLKSWLKSHGIPVPK 22 (38)
T ss_pred HHHHHHHHHHcCCCCCC
Confidence 47899999999998775
No 79
>PRK13629 threonine/serine transporter TdcC; Provisional
Probab=31.60 E-value=59 Score=34.26 Aligned_cols=61 Identities=10% Similarity=0.210 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHhhheehheehhHHHHHHHHHHHHHHHHHhhh-hhhhchhhhhhhhccC--CCcccccC
Q 017674 158 WVVMVVVAMGVMVGAFLMVAVKKAVVLVAVAAVVGPLFIGMIW-NCVWGRRGLLGFVKKY--PDTELRGA 224 (368)
Q Consensus 158 w~vi~l~~~g~~aG~f~l~av~~~~ll~~~~~lf~~v~a~~iW-N~~~~~~~i~rfl~r~--Pdt~lr~a 224 (368)
|+ +.++.+.++||.+.| ++.....+.....++.+++| -.+++.+.+.|+.-.+ +++++.++
T Consensus 24 W~-l~l~GTAIGAGmLfL-----PI~~g~~Gf~p~lillll~~p~m~~s~l~L~e~~L~~~~~~~~i~~v 87 (443)
T PRK13629 24 WT-LGLFGTAIGAGVLFF-----PIRAGFGGLIPILLMLVLAYPIAFYCHRALARLCLSGSNPSGNITET 87 (443)
T ss_pred HH-HHHHHHHHhHHHHHH-----HHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCHHHH
Confidence 87 667888899998877 66677777777888888999 7788888899988776 34555543
No 80
>PRK01122 potassium-transporting ATPase subunit B; Provisional
Probab=31.17 E-value=1.2e+02 Score=33.64 Aligned_cols=34 Identities=24% Similarity=0.274 Sum_probs=17.7
Q ss_pred cccccccCcceeeeeeechhhHHHHHHHHHHHHHhhhe
Q 017674 136 GSAVTSLGEDVKVGFRVSRAVAWVVMVVVAMGVMVGAF 173 (368)
Q Consensus 136 ~~avt~l~~~~~~~~~vpk~vlw~vi~l~~~g~~aG~f 173 (368)
-.|...|+.+.- |+ -+++|++.+..+.-++.|.+
T Consensus 19 ~~~~~~~~~~~~--~~--~p~~~vl~~~a~ls~~~~~~ 52 (679)
T PRK01122 19 KDAFKKLDPRVQ--IR--NPVMFVVEVGSILTTILTIA 52 (679)
T ss_pred HHHHHcCCHHHH--hh--ChHHHHHHHHHHHHHHHHhh
Confidence 344555555533 22 35556666666666666543
No 81
>TIGR02916 PEP_his_kin putative PEP-CTERM system histidine kinase. Members of this protein family have a novel N-terminal domain, a single predicted membrane-spanning helix, and a predicted cystosolic histidine kinase domain. We designate this protein PrsK, and its companion DNA-binding response regulator protein (TIGR02915) PrsR. These predicted signal-transducing proteins appear to enable enhancer-dependent transcriptional activation. The prsK gene is often associated with exopolysaccharide biosynthesis genes.
Probab=31.14 E-value=89 Score=33.16 Aligned_cols=19 Identities=26% Similarity=0.415 Sum_probs=15.2
Q ss_pred eeeechhhHHHHHHHHHHH
Q 017674 149 GFRVSRAVAWVVMVVVAMG 167 (368)
Q Consensus 149 ~~~vpk~vlw~vi~l~~~g 167 (368)
.+.+++.+++-...+++.|
T Consensus 221 ~~~~sr~~~~~~~~~~~~g 239 (679)
T TIGR02916 221 RIAVSREMAFHSATLLGAG 239 (679)
T ss_pred ceeechHHHHHHHHHHHHH
Confidence 3449999999888888777
No 82
>PRK07118 ferredoxin; Validated
Probab=30.95 E-value=32 Score=33.56 Aligned_cols=26 Identities=31% Similarity=0.551 Sum_probs=22.5
Q ss_pred hhHHHHHHHHHHHHHhhheehheehh
Q 017674 155 AVAWVVMVVVAMGVMVGAFLMVAVKK 180 (368)
Q Consensus 155 ~vlw~vi~l~~~g~~aG~f~l~av~~ 180 (368)
.|++++++|.++||++|.++.+|=+.
T Consensus 3 ~i~~~~~~~~~~g~~~g~~l~~a~~~ 28 (280)
T PRK07118 3 MILFAVLSLGALGLVFGILLAFASKK 28 (280)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHeee
Confidence 57899999999999999998887654
No 83
>PF14110 DUF4282: Domain of unknown function (DUF4282)
Probab=30.81 E-value=94 Score=25.42 Aligned_cols=21 Identities=10% Similarity=0.553 Sum_probs=14.0
Q ss_pred echhhHHHHHHHHHHHHHhhh
Q 017674 152 VSRAVAWVVMVVVAMGVMVGA 172 (368)
Q Consensus 152 vpk~vlw~vi~l~~~g~~aG~ 172 (368)
+=+.++|+.+++.+++.+.+-
T Consensus 13 ii~~~Y~l~li~i~l~~~~~~ 33 (90)
T PF14110_consen 13 IIKVLYWLGLILIVLSGLSGI 33 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445678888777776655544
No 84
>PF00924 MS_channel: Mechanosensitive ion channel; InterPro: IPR006685 Mechanosensitive (MS) channels provide protection against hypo-osmotic shock, responding both to stretching of the cell membrane and to membrane depolarisation. They are present in the membranes of organisms from the three domains of life: bacteria, archaea, and eukarya []. There are two families of MS channels: large-conductance MS channels (MscL) and small-conductance MS channels (MscS or YGGB). The pressure threshold for MscS opening is 50% that of MscL []. The MscS family is much larger and more variable in size and sequence than the MscL family. Much of the diversity in MscS proteins occurs in the size of the transmembrane regions, which ranges from three to eleven transmembrane helices, although the three C-terminal helices are conserved. This family contains sequences form the MscS family of proteins. MscS folds as a homo-heptamer with a cylindrical shape, and can be divided into transmembrane and extramembrane regions: an N-terminal periplasmic region, a transmembrane region, and a C-terminal cytoplasmic region (middle and C-terminal domains). The transmembrane region forms a channel through the membrane that opens into a chamber enclosed by the extramembrane portion, the latter connecting to the cytoplasm through distinct portals [].; GO: 0055085 transmembrane transport, 0016020 membrane; PDB: 2OAU_E 2VV5_F.
Probab=30.37 E-value=53 Score=28.94 Aligned_cols=12 Identities=17% Similarity=0.271 Sum_probs=7.6
Q ss_pred cCCCCcEEEEEE
Q 017674 223 GAIDGQYVKVTG 234 (368)
Q Consensus 223 ~a~dGq~VKItG 234 (368)
-++.|++|+|.|
T Consensus 60 pf~vGD~I~i~~ 71 (206)
T PF00924_consen 60 PFKVGDRIEIGG 71 (206)
T ss_dssp SS-TT-EEESSS
T ss_pred CccCCCEEEEEE
Confidence 468999999864
No 85
>PF11432 DUF3197: Protein of unknown function (DUF3197); InterPro: IPR024443 This domain, whose function is unknown, is found in bacterial proteins.; PDB: 1WN9_A 1WNA_A.
Probab=30.20 E-value=54 Score=29.04 Aligned_cols=62 Identities=21% Similarity=0.446 Sum_probs=34.5
Q ss_pred EEEEecCC-----ceeEEEEecCCCeeeeeeeeceE-EeecCCCCCCCHHHHHHHhhcCCCCcCceeeeeeeccccCCc
Q 017674 292 FYISDFQS-----GLRALVKAGYGAKVAPFVKPATV-VNITKGNRDLSPSFLRWLADRNLSSDDRIMRLKEGFAPLFSV 364 (368)
Q Consensus 292 FYIsDfqS-----G~RAlVKaG~GakVtp~V~es~v-vd~~~~~kdlS~~f~~WL~erNlSsd~r~mRlkEGyIkeGe~ 364 (368)
.+|+|.|. +..++|..|. ++.+.+|.- =..+..-..+=.||.+||.++|. +.+|-.+..+|.
T Consensus 19 ~liTDwQd~R~~ARYa~ll~~gk----~~llt~dAFGPafG~~G~~ALaELv~wl~~~G~-------~f~EaVl~p~e~ 86 (113)
T PF11432_consen 19 YLITDWQDQRPQARYALLLRGGK----EPLLTPDAFGPAFGPEGERALAELVRWLQERGA-------RFYEAVLSPSEF 86 (113)
T ss_dssp EEEEE--SSCCC--EEEEEE-SS-----EEEEEEEESTTS-TTHHHHHHHHHHHHHHTT--------EEEEEEE-GGGH
T ss_pred EEEeccccchhhhhhhhheecCC----cccccccccCcccCccHHHHHHHHHHHHHHcCC-------chhheecCHHHH
Confidence 68999886 3455665554 456655552 11122222455789999999984 678887776653
No 86
>PF10112 Halogen_Hydrol: 5-bromo-4-chloroindolyl phosphate hydrolysis protein; InterPro: IPR018770 This entry consists of prokaryotic proteins that mediate the hydrolysis of 5-bromo-4-chloroindolyl phosphate bonds.
Probab=30.14 E-value=91 Score=28.31 Aligned_cols=30 Identities=7% Similarity=-0.015 Sum_probs=14.8
Q ss_pred hhhHHHHHHHHHHHHHhhheehheehhHHH
Q 017674 154 RAVAWVVMVVVAMGVMVGAFLMVAVKKAVV 183 (368)
Q Consensus 154 k~vlw~vi~l~~~g~~aG~f~l~av~~~~l 183 (368)
+.+.|.++.++++.++.-..+++.-++.++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 35 (199)
T PF10112_consen 6 RFIFRWILGVLIAAITFLVSFFGFDHSFLL 35 (199)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 455566666555554443334444455444
No 87
>PRK01844 hypothetical protein; Provisional
Probab=29.63 E-value=38 Score=27.87 Aligned_cols=16 Identities=19% Similarity=0.598 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHhhh
Q 017674 157 AWVVMVVVAMGVMVGA 172 (368)
Q Consensus 157 lw~vi~l~~~g~~aG~ 172 (368)
+|..+++.+.+|++|+
T Consensus 3 ~~~~I~l~I~~li~G~ 18 (72)
T PRK01844 3 IWLGILVGVVALVAGV 18 (72)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4666666666666664
No 88
>COG5488 Integral membrane protein [Function unknown]
Probab=29.54 E-value=56 Score=30.57 Aligned_cols=52 Identities=17% Similarity=0.195 Sum_probs=34.0
Q ss_pred chhhHHHHHHHHHHHHHhhheehheehhHHHHHHHHHHHHHHHHHhhhhhhhc
Q 017674 153 SRAVAWVVMVVVAMGVMVGAFLMVAVKKAVVLVAVAAVVGPLFIGMIWNCVWG 205 (368)
Q Consensus 153 pk~vlw~vi~l~~~g~~aG~f~l~av~~~~ll~~~~~lf~~v~a~~iWN~~~~ 205 (368)
|+...|..+++.++-|++|+|+++- .-|-+|-..+.=+.++--+|-||+...
T Consensus 28 ~rgf~~lm~~~~~~~~~v~~ff~~i-gAwpV~~FfGLDvlal~~Afr~nyraA 79 (164)
T COG5488 28 PRGFGVLMLALGILSLVVAIFFLVI-GAWPVLPFFGLDVLALYLAFRANYRAA 79 (164)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHh-ccCceeccchHHHHHHHHHHHHHHHHh
Confidence 7788899999999999999998753 233344334444444444556666433
No 89
>TIGR01944 rnfB electron transport complex, RnfABCDGE type, B subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the B subunit.
Probab=28.98 E-value=37 Score=30.37 Aligned_cols=24 Identities=29% Similarity=0.441 Sum_probs=18.8
Q ss_pred hHHHHHHHHHHHHHhhheehheeh
Q 017674 156 VAWVVMVVVAMGVMVGAFLMVAVK 179 (368)
Q Consensus 156 vlw~vi~l~~~g~~aG~f~l~av~ 179 (368)
++++++++.++|++.|.++..|-+
T Consensus 2 ~~~~~~~~~~~g~~~~~~l~~~~~ 25 (165)
T TIGR01944 2 IIAAVAALSALGLALGAILGYAAR 25 (165)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhee
Confidence 568888999999988887766543
No 90
>PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5.5 kb transcript in Homo sapiens. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin receptor in muscle, where it may regulate agrin-induced acetylcholine receptor clustering at the neuromuscular junction. There is also evidence which suggests the function of dystroglycan as a part of the signal transduction pathway because it is shown that Grb2, a mediator of the Ras-related signal pathway, can interact with the cytoplasmic domain of dystroglycan. In general, aberrant expression of dystrophin-associated protein complex underlies the pathogenesis of Duchenne muscular dystrophy, Becker muscular dystrophy and severe childhood autosomal recessive muscular dystrophy. Interestingly, no genetic disease has been described for either [alpha]- or [beta]-dystroglycan. Dystroglycan is widely distributed in non-muscle tissues as well as in muscle tissues. During epithelial morphogenesis of kidney, the dystroglycan complex is shown to act as a receptor for the basement membrane. Dystroglycan expression in Mus musculus brain and neural retina has also been reported. However, the physiological role of dystroglycan in non-muscle tissues has remained unclear [].; PDB: 1EG4_P.
Probab=28.80 E-value=19 Score=35.98 Aligned_cols=11 Identities=18% Similarity=0.302 Sum_probs=0.0
Q ss_pred HHHhhhhhhhc
Q 017674 195 FIGMIWNCVWG 205 (368)
Q Consensus 195 ~a~~iWN~~~~ 205 (368)
+|++|+-||++
T Consensus 161 IA~iIa~icyr 171 (290)
T PF05454_consen 161 IAGIIACICYR 171 (290)
T ss_dssp -----------
T ss_pred HHHHHHHHhhh
Confidence 34555544444
No 91
>TIGR02302 aProt_lowcomp conserved hypothetical protein TIGR02302. Members of this family are long (~850 residue) bacterial proteins from the alpha Proteobacteria. Each has 2-3 predicted transmembrane helices near the N-terminus and a long C-terminal region that includes stretches of Gln/Gly-rich low complexity sequence, predicted by TMHMM to be outside the membrane. In Bradyrhizobium japonicum, two tandem reading frames are together homologous the single members found in other species; the cutoffs scores are set low enough that the longer scores above the trusted cutoff and the shorter above the noise cutoff for this model.
Probab=28.74 E-value=78 Score=36.06 Aligned_cols=57 Identities=12% Similarity=0.098 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHhhheehheehhHHHHHHHHHHHHHHHHHhhhhhhhc-hhhhhhhhcc
Q 017674 159 VVMVVVAMGVMVGAFLMVAVKKAVVLVAVAAVVGPLFIGMIWNCVWG-RRGLLGFVKK 215 (368)
Q Consensus 159 ~vi~l~~~g~~aG~f~l~av~~~~ll~~~~~lf~~v~a~~iWN~~~~-~~~i~rfl~r 215 (368)
+|+.+|..-..+|.|-+.-.--+++++++.+++++++...+|++.|= +.++++=|.+
T Consensus 26 ~v~~lfla~~~~Gl~~~lp~~~~~~~l~~~~~~~~~~l~~~~rfr~P~~~ea~~Rle~ 83 (851)
T TIGR02302 26 SLVGLFLSLGWAGLFLALPFWLHIAGLVLFAALALVALIPAIRFRWPSRDEALARLER 83 (851)
T ss_pred HHHHHHHHHHHHhHHHhhHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHH
Confidence 34444444455666655522112222222222222222233455444 6666665543
No 92
>PF07790 DUF1628: Protein of unknown function (DUF1628); InterPro: IPR012859 The sequences making up this family are derived from hypothetical proteins of unknown function expressed by various archaeal species. The region in question is approximately 160 residues long.
Probab=28.70 E-value=57 Score=25.59 Aligned_cols=22 Identities=9% Similarity=0.442 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhh
Q 017674 181 AVVLVAVAAVVGPLFIGMIWNC 202 (368)
Q Consensus 181 ~~ll~~~~~lf~~v~a~~iWN~ 202 (368)
-+||+++.++.++++++|.++.
T Consensus 9 viLliaitVilaavv~~~~~~~ 30 (80)
T PF07790_consen 9 VILLIAITVILAAVVGAFVFGL 30 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHhcc
Confidence 4677778888888888887765
No 93
>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=28.42 E-value=74 Score=31.46 Aligned_cols=34 Identities=21% Similarity=0.382 Sum_probs=25.5
Q ss_pred echhhHHHHHHHHHHHHHhhheehheehhHHHHHH
Q 017674 152 VSRAVAWVVMVVVAMGVMVGAFLMVAVKKAVVLVA 186 (368)
Q Consensus 152 vpk~vlw~vi~l~~~g~~aG~f~l~av~~~~ll~~ 186 (368)
=||.+.|+.+.+++.+++.|.++. ...++.++++
T Consensus 86 s~~~v~~~~~~~~~ia~~~Gl~L~-~~~g~~~l~i 119 (317)
T PRK13387 86 KPRNVLTVILLMYVVAAILGVYLC-MNTSWLLLVI 119 (317)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHH-HHhcHHHHHH
Confidence 368889999999999999888665 4566655443
No 94
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=28.29 E-value=1.1e+02 Score=30.38 Aligned_cols=9 Identities=0% Similarity=0.468 Sum_probs=5.0
Q ss_pred eehheehhH
Q 017674 173 FLMVAVKKA 181 (368)
Q Consensus 173 f~l~av~~~ 181 (368)
.++++|-++
T Consensus 27 yv~i~~~~~ 35 (409)
T TIGR00540 27 YVLIETANR 35 (409)
T ss_pred eEEEEECCE
Confidence 555665554
No 95
>COG3601 Predicted membrane protein [Function unknown]
Probab=28.25 E-value=73 Score=30.38 Aligned_cols=55 Identities=13% Similarity=0.201 Sum_probs=33.9
Q ss_pred hHHHHHHHHHHHHHhhheehheehhHHHHHH---------------HHHHHHHHHHHhhhhhhhc-hhhhhhh
Q 017674 156 VAWVVMVVVAMGVMVGAFLMVAVKKAVVLVA---------------VAAVVGPLFIGMIWNCVWG-RRGLLGF 212 (368)
Q Consensus 156 vlw~vi~l~~~g~~aG~f~l~av~~~~ll~~---------------~~~lf~~v~a~~iWN~~~~-~~~i~rf 212 (368)
.+=+++..|.||+.||-|++ +++|...++. +++.|..++ .++|+.-++ ++.+.++
T Consensus 40 ~iP~Lig~~~lGp~ag~~vl-lvk~iL~~l~~g~~~~~iG~~mNfiag~~fv~~~-~~~~k~~ks~~~~i~~~ 110 (186)
T COG3601 40 DIPALIGYFLLGPGAGIFVL-LVKNILLYLLSGPVGDPIGPPMNFIAGGSFVLIA-ALIYKKKKSTKNLIVGL 110 (186)
T ss_pred HhHHHHHHHHhccchHHHHH-HHHHHHHHHHcCCCCCCccHHHHHHHHHHHHHHH-HHHHHHHhHHHHHHHHH
Confidence 33467889999999998776 4666655543 344444443 667766555 4444443
No 96
>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase. This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.
Probab=28.18 E-value=83 Score=30.69 Aligned_cols=25 Identities=28% Similarity=0.461 Sum_probs=21.1
Q ss_pred chhhHHHHHHHHHHHHHhhheehhe
Q 017674 153 SRAVAWVVMVVVAMGVMVGAFLMVA 177 (368)
Q Consensus 153 pk~vlw~vi~l~~~g~~aG~f~l~a 177 (368)
||.+.++.+++++.+++.|.++...
T Consensus 76 ~~~v~~~~~~~~~~a~~~Gi~l~~~ 100 (284)
T TIGR00751 76 PREVKTALITSVALGALSGLVLALL 100 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7888899999999999999877653
No 97
>PF01925 TauE: Sulfite exporter TauE/SafE; InterPro: IPR002781 This family is found in integral membrane proteins of prokaryotes which are uncharacterised.; GO: 0016021 integral to membrane
Probab=27.98 E-value=1.1e+02 Score=27.51 Aligned_cols=44 Identities=14% Similarity=0.314 Sum_probs=31.3
Q ss_pred echhhHHHHHHHHHHHHHhhheehheehhHHHHHHHHHHHHHHH
Q 017674 152 VSRAVAWVVMVVVAMGVMVGAFLMVAVKKAVVLVAVAAVVGPLF 195 (368)
Q Consensus 152 vpk~vlw~vi~l~~~g~~aG~f~l~av~~~~ll~~~~~lf~~v~ 195 (368)
+....++.+++..++|..+|++++..+-..++..+++++..+.+
T Consensus 61 i~~~~~~~~~~~~~~g~~iG~~l~~~l~~~~l~~~~~~~ll~~~ 104 (240)
T PF01925_consen 61 IDWKIVLPLIIGALIGVVIGAWLLSLLPDDILKLIFGLFLLLLA 104 (240)
T ss_pred cchhhhhhhhhHhHHHHHHHHhhhcchhHHHHHHHHHHHHHHHH
Confidence 44556677778888999999999998877766655555444333
No 98
>PF05879 RHD3: Root hair defective 3 GTP-binding protein (RHD3); InterPro: IPR008803 This family consists of several eukaryotic root hair defective 3 like GTP-binding proteins. It has been speculated that the RHD3 protein is a member of a novel class of GTP-binding proteins that is widespread in eukaryotes and required for regulated cell enlargement []. The family also contains the homologous Saccharomyces cerevisiae synthetic construct enhancement of YOP1 (SEY1) protein which is involved in membrane trafficking [].; GO: 0016817 hydrolase activity, acting on acid anhydrides
Probab=27.96 E-value=66 Score=35.66 Aligned_cols=43 Identities=12% Similarity=0.359 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHhhheehheehhHHHHHHHHHHHHHHHHHhhhhh
Q 017674 157 AWVVMVVVAMGVMVGAFLMVAVKKAVVLVAVAAVVGPLFIGMIWNC 202 (368)
Q Consensus 157 lw~vi~l~~~g~~aG~f~l~av~~~~ll~~~~~lf~~v~a~~iWN~ 202 (368)
+|+.+++++.|+= =+|+.++|+++|++++++++++.+++--|.
T Consensus 651 ~w~~~ll~vLGwN---E~m~vLrnPl~~~l~li~~~~~~~~~~l~l 693 (742)
T PF05879_consen 651 PWMYLLLLVLGWN---EFMAVLRNPLYFTLLLILGGGFYVLYQLNL 693 (742)
T ss_pred HHHHHHHHHHhHH---HHHHHHHChHHHHHHHHHHHHHHHHHHhcc
Confidence 3666666666632 245677899999998877776555443344
No 99
>PF09788 Tmemb_55A: Transmembrane protein 55A; InterPro: IPR019178 Members of this family catalyse the hydrolysis of the 4-position phosphate of phosphatidylinositol 4,5-bisphosphate, in the reaction: 1-phosphatidyl-myo-inositol 4,5-bisphosphate + H(2)O = 1-phosphatidyl-1D-myo-inositol 5-phosphate + phosphate.
Probab=27.96 E-value=65 Score=32.05 Aligned_cols=46 Identities=15% Similarity=0.309 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHhhheehheehhHHHHHHHHHHHHHHHHHhhhhhhhc
Q 017674 159 VVMVVVAMGVMVGAFLMVAVKKAVVLVAVAAVVGPLFIGMIWNCVWG 205 (368)
Q Consensus 159 ~vi~l~~~g~~aG~f~l~av~~~~ll~~~~~lf~~v~a~~iWN~~~~ 205 (368)
++.+++++|+.+|.+-.+--|+.+..+-++ +|.+.+.+++-.+||.
T Consensus 206 llfliiaigltvGT~~~A~~~~giY~~wv~-~~l~a~~~~~rs~yy~ 251 (256)
T PF09788_consen 206 LLFLIIAIGLTVGTWTYAKTYGGIYVSWVG-LFLIALICLIRSIYYC 251 (256)
T ss_pred HHHHHHHHHHhhhhHHHHhhcCcEeHHHHH-HHHHHHHHHHHhheeE
Confidence 334444556666666655445544333333 3333333555566665
No 100
>TIGR02056 ChlG chlorophyll synthase, ChlG. This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).
Probab=27.80 E-value=89 Score=30.53 Aligned_cols=23 Identities=13% Similarity=0.235 Sum_probs=18.6
Q ss_pred chhhHHHHHHHHHHHHHhhheeh
Q 017674 153 SRAVAWVVMVVVAMGVMVGAFLM 175 (368)
Q Consensus 153 pk~vlw~vi~l~~~g~~aG~f~l 175 (368)
|+.+++..+++++.|+++|.++.
T Consensus 98 ~~~a~~~~~~l~~~~~~lg~~l~ 120 (306)
T TIGR02056 98 EPEVITQIVLLFIAGIAIAFILD 120 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777888888899999888764
No 101
>PF07291 MauE: Methylamine utilisation protein MauE; InterPro: IPR009908 This entry consists of several bacterial methylamine utilisation MauE proteins. Synthesis of enzymes involved in methylamine oxidation via methylamine dehydrogenase (MADH) is encoded by genes present in the mau cluster. MauE and MauD are specifically involved in the processing, transport, and/or maturation of the beta-subunit and that the absence of each of these proteins leads to production of a non-functional beta-subunit which becomes rapidly degraded [].; GO: 0030416 methylamine metabolic process, 0016021 integral to membrane
Probab=27.46 E-value=1.3e+02 Score=27.67 Aligned_cols=57 Identities=14% Similarity=0.162 Sum_probs=28.0
Q ss_pred echhhHHHHHHHH-HHHHHhhheehheehhHHHHHHHHHHHHHHHHHhhhhhhhchhh
Q 017674 152 VSRAVAWVVMVVV-AMGVMVGAFLMVAVKKAVVLVAVAAVVGPLFIGMIWNCVWGRRG 208 (368)
Q Consensus 152 vpk~vlw~vi~l~-~~g~~aG~f~l~av~~~~ll~~~~~lf~~v~a~~iWN~~~~~~~ 208 (368)
+|......+..++ ..=+++|..++.-.-+..-.+++.++++.-.+.+.+|..++++.
T Consensus 45 lP~~~~~~~A~~lP~~El~~gl~Ll~~~~~~~a~~~a~~Ll~~F~~ai~~~~~rg~~~ 102 (184)
T PF07291_consen 45 LPDWLVRPVAWALPWLELALGLLLLFPPTRRWAALLAAALLLVFTAAIAINLLRGRTD 102 (184)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 5765443333333 33355555555444444333444444444444566787766543
No 102
>PF13630 SdpI: SdpI/YhfL protein family
Probab=27.05 E-value=1.3e+02 Score=22.71 Aligned_cols=9 Identities=22% Similarity=0.571 Sum_probs=5.0
Q ss_pred eeeeeechh
Q 017674 147 KVGFRVSRA 155 (368)
Q Consensus 147 ~~~~~vpk~ 155 (368)
-+|+|.|..
T Consensus 8 ~~G~Rt~~t 16 (76)
T PF13630_consen 8 WIGYRTPWT 16 (76)
T ss_pred eeeEeChHH
Confidence 466665544
No 103
>PF12576 DUF3754: Protein of unknown function (DUF3754); InterPro: IPR022227 This domain family is found in bacteria, archaea and eukaryotes, and is typically between 135 and 166 amino acids in length. There is a single completely conserved residue P that may be functionally important.
Probab=26.84 E-value=1.6e+02 Score=26.04 Aligned_cols=18 Identities=11% Similarity=0.136 Sum_probs=9.9
Q ss_pred HHhhhhhhhc-hhhhhhhh
Q 017674 196 IGMIWNCVWG-RRGLLGFV 213 (368)
Q Consensus 196 a~~iWN~~~~-~~~i~rfl 213 (368)
+.+++..|.+ ++.-.+|.
T Consensus 106 ~~~~~r~~~~~~~~~~ry~ 124 (141)
T PF12576_consen 106 GGYAFRQYTGYKNNRARYQ 124 (141)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4556666666 55544443
No 104
>PF02535 Zip: ZIP Zinc transporter; InterPro: IPR003689 These ZIP zinc transporter proteins define a family of metal ion transporters that are found in plants, protozoa, fungi, invertebrates, and vertebrates, making it now possible to address questions of metal ion accumulation and homeostasis in diverse organisms [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane
Probab=26.64 E-value=88 Score=29.25 Aligned_cols=44 Identities=7% Similarity=0.214 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHhhheehhee----hhHHHHHHHHHHHHHHHHHhhhh
Q 017674 158 WVVMVVVAMGVMVGAFLMVAV----KKAVVLVAVAAVVGPLFIGMIWN 201 (368)
Q Consensus 158 w~vi~l~~~g~~aG~f~l~av----~~~~ll~~~~~lf~~v~a~~iWN 201 (368)
|.+.+++.+--.+|++|-.++ +...-..+...+.++.++.|+|-
T Consensus 233 ~~~~~~~sl~~piG~~ig~~~~~~~~~~~~~~~~~~~~a~aaG~~lyv 280 (317)
T PF02535_consen 233 LLLLLLFSLSTPIGALIGIAISNSGSSSSSDIVSGILLAFAAGTFLYV 280 (317)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444 44444555666666777777763
No 105
>cd04478 RPA2_DBD_D RPA2_DBD_D: A subfamily of OB folds corresponding to the OB fold of the central ssDNA-binding domain (DBD)-D of human RPA2 (also called RPA32). RPA2 is a subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). The major DNA binding activity of RPA is associated with RPA1 DBD-A and DBD-B; RPA2 DBD-D is a weak ssDNA-binding domain. RPA2 DBD-D is also involved in trimerization. The ssDNA binding mechanism is believed to be multistep and to involve conformational change. N-terminal to human RPA2 DBD-D is a domain containing all the known phosphorylation sites of RPA. Human RPA2 is phosphorylated in a cell cycle dependent manner in response to DNA dam
Probab=26.43 E-value=58 Score=25.62 Aligned_cols=20 Identities=30% Similarity=0.551 Sum_probs=16.7
Q ss_pred cccccCCCCcEEEEEEEEEe
Q 017674 219 TELRGAIDGQYVKVTGVVTC 238 (368)
Q Consensus 219 t~lr~a~dGq~VKItG~VtC 238 (368)
.....++.|+||||.|.|..
T Consensus 43 ~~~~~~~~g~~v~v~G~v~~ 62 (95)
T cd04478 43 SEVEPIEEGTYVRVFGNLKS 62 (95)
T ss_pred ccccccccCCEEEEEEEEcc
Confidence 35678999999999998764
No 106
>PF04971 Lysis_S: Lysis protein S ; InterPro: IPR007054 The lysis S protein is a cytotoxic protein forming holes in membranes causing cell lysis. The action of Lysis S is independent of the proportion of acidic phospholipids in the membrane [].
Probab=26.22 E-value=69 Score=26.18 Aligned_cols=24 Identities=17% Similarity=0.217 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHhhh--hhhhchhhh
Q 017674 186 AVAAVVGPLFIGMIW--NCVWGRRGL 209 (368)
Q Consensus 186 ~~~~lf~~v~a~~iW--N~~~~~~~i 209 (368)
+++++.+++++++.| |.||..++=
T Consensus 35 aIGvi~gi~~~~lt~ltN~YFK~k~d 60 (68)
T PF04971_consen 35 AIGVIGGIFFGLLTYLTNLYFKIKED 60 (68)
T ss_pred hHHHHHHHHHHHHHHHhHhhhhhhHh
Confidence 344444444444444 999984443
No 107
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []. In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....
Probab=26.21 E-value=56 Score=22.52 Aligned_cols=17 Identities=24% Similarity=0.372 Sum_probs=14.5
Q ss_pred HHHHHHHhhcCCCCcCc
Q 017674 334 PSFLRWLADRNLSSDDR 350 (368)
Q Consensus 334 ~~f~~WL~erNlSsd~r 350 (368)
++|+.+|+++||+..|+
T Consensus 7 ~eLk~~l~~~gL~~~G~ 23 (35)
T PF02037_consen 7 AELKEELKERGLSTSGK 23 (35)
T ss_dssp HHHHHHHHHTTS-STSS
T ss_pred HHHHHHHHHCCCCCCCC
Confidence 68999999999999983
No 108
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=26.15 E-value=1.2e+02 Score=29.69 Aligned_cols=19 Identities=16% Similarity=0.302 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHhhheehh
Q 017674 158 WVVMVVVAMGVMVGAFLMV 176 (368)
Q Consensus 158 w~vi~l~~~g~~aG~f~l~ 176 (368)
++-++++.+|++.++++++
T Consensus 236 ~~g~~~~~~~~~~~~~~~~ 254 (325)
T PRK10714 236 LLGSIIAIGGFSLAVLLVV 254 (325)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334556677777776653
No 109
>COG4303 EutB Ethanolamine ammonia-lyase, large subunit [Amino acid transport and metabolism]
Probab=26.14 E-value=50 Score=34.48 Aligned_cols=23 Identities=26% Similarity=0.572 Sum_probs=20.1
Q ss_pred CCCCCHHHHHHHhhcCCCCcCce
Q 017674 329 NRDLSPSFLRWLADRNLSSDDRI 351 (368)
Q Consensus 329 ~kdlS~~f~~WL~erNlSsd~r~ 351 (368)
.....|||++||.+.++..++|+
T Consensus 420 glrP~~EFe~wl~~mGi~~~Grl 442 (453)
T COG4303 420 GLRPIPEFERWLERMGIMANGRL 442 (453)
T ss_pred CCCCchHHHHHHHHhCcccCCce
Confidence 36689999999999999988855
No 110
>PF14023 DUF4239: Protein of unknown function (DUF4239)
Probab=26.03 E-value=1.4e+02 Score=26.99 Aligned_cols=9 Identities=22% Similarity=0.995 Sum_probs=5.6
Q ss_pred echhhHHHHH
Q 017674 152 VSRAVAWVVM 161 (368)
Q Consensus 152 vpk~vlw~vi 161 (368)
+|.+. |.++
T Consensus 135 lp~~~-w~vl 143 (209)
T PF14023_consen 135 LPPPL-WIVL 143 (209)
T ss_pred CChhH-HHHH
Confidence 88766 5543
No 111
>PF09972 DUF2207: Predicted membrane protein (DUF2207); InterPro: IPR018702 This domain has no known function.
Probab=26.00 E-value=1.2e+02 Score=29.88 Aligned_cols=10 Identities=10% Similarity=0.484 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q 017674 158 WVVMVVVAMG 167 (368)
Q Consensus 158 w~vi~l~~~g 167 (368)
|+.+++++++
T Consensus 402 ~~~~i~~i~~ 411 (511)
T PF09972_consen 402 ILGIILLILG 411 (511)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 112
>KOG2927 consensus Membrane component of ER protein translocation complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.88 E-value=1.4e+02 Score=31.17 Aligned_cols=66 Identities=17% Similarity=0.301 Sum_probs=36.4
Q ss_pred ceeeeee-echhhH-HHHHHHHHHHHHhhhee-------------hhe-ehhHHHHHHHHHHHHHHHHHhhhhhhhchhh
Q 017674 145 DVKVGFR-VSRAVA-WVVMVVVAMGVMVGAFL-------------MVA-VKKAVVLVAVAAVVGPLFIGMIWNCVWGRRG 208 (368)
Q Consensus 145 ~~~~~~~-vpk~vl-w~vi~l~~~g~~aG~f~-------------l~a-v~~~~ll~~~~~lf~~v~a~~iWN~~~~~~~ 208 (368)
|+-|=+- =|+.-. |++.++|+.+.+|..++ +.+ ---.+++|.|++++=+|+-.++|.++.++-.
T Consensus 176 de~YVW~yep~~~~~~vl~~~fvl~tlaivLFPLWP~~mR~gvyY~sig~~gfl~~IlvLaIvRlILF~I~~il~~g~~g 255 (372)
T KOG2927|consen 176 DEHYVWIYEPRPLMWQVLGVLFVLVTLAIVLFPLWPRRMRQGVYYLSIGAGGFLAFILVLAIVRLILFGITWILTGGKHG 255 (372)
T ss_pred CceEEEeccCCchhHHHHHHHHHHHHHHHHhcccCcHHHhcceeeeecchhHHHHHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 4445444 233333 56666677776665432 111 1112344666666677777888888877655
Q ss_pred hh
Q 017674 209 LL 210 (368)
Q Consensus 209 i~ 210 (368)
+-
T Consensus 256 ~W 257 (372)
T KOG2927|consen 256 FW 257 (372)
T ss_pred eE
Confidence 43
No 113
>PF10873 DUF2668: Protein of unknown function (DUF2668); InterPro: IPR022640 Members in this family of proteins are annotated as cysteine and tyrosine-rich protein 1, however currently no function is known [].
Probab=25.77 E-value=32 Score=31.85 Aligned_cols=15 Identities=33% Similarity=0.549 Sum_probs=8.6
Q ss_pred HHHHHHHHHHhhhee
Q 017674 160 VMVVVAMGVMVGAFL 174 (368)
Q Consensus 160 vi~l~~~g~~aG~f~ 174 (368)
+.+||+||.+||++|
T Consensus 68 fgiVfimgvva~i~i 82 (155)
T PF10873_consen 68 FGIVFIMGVVAGIAI 82 (155)
T ss_pred hhhHHHHHHHHHHHH
Confidence 555666666655443
No 114
>PRK05113 electron transport complex protein RnfB; Provisional
Probab=25.64 E-value=47 Score=30.64 Aligned_cols=24 Identities=25% Similarity=0.299 Sum_probs=18.2
Q ss_pred hhHHHHHHHHHHHHHhhheehhee
Q 017674 155 AVAWVVMVVVAMGVMVGAFLMVAV 178 (368)
Q Consensus 155 ~vlw~vi~l~~~g~~aG~f~l~av 178 (368)
.++++++++.++||++|.++..|=
T Consensus 3 ~~~~~~~~~~~lg~~~g~~l~~a~ 26 (191)
T PRK05113 3 AIWIAVAALSLLALVFGAILGFAS 26 (191)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHh
Confidence 467888888888988887665553
No 115
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=25.35 E-value=2.3e+02 Score=27.92 Aligned_cols=44 Identities=16% Similarity=0.318 Sum_probs=33.2
Q ss_pred eeeceEEeecC--CCCCCCHHHHHHHhhcCCCCcCceeeeeeecccc
Q 017674 317 VKPATVVNITK--GNRDLSPSFLRWLADRNLSSDDRIMRLKEGFAPL 361 (368)
Q Consensus 317 V~es~vvd~~~--~~kdlS~~f~~WL~erNlSsd~r~mRlkEGyIke 361 (368)
++|.|.++... ...++...+.+||+++|+.... ++|-|.|+|-.
T Consensus 198 lvE~T~fs~~~~~~~~~~~~~l~~~l~~~g~~~~~-i~~~E~G~IPm 243 (374)
T PF05834_consen 198 LVEETSFSPRPALPEEELKARLRRYLERLGIDDYE-ILEEERGVIPM 243 (374)
T ss_pred EEEEEEEcCCCCCCHHHHHHHHHHHHHHcCCCcee-EEEeecceeec
Confidence 56777666544 2236668899999998888765 99999999876
No 116
>PRK10847 hypothetical protein; Provisional
Probab=24.66 E-value=1.6e+02 Score=27.43 Aligned_cols=17 Identities=29% Similarity=0.722 Sum_probs=8.3
Q ss_pred hhHHHHHHHHHHHHHhhh
Q 017674 155 AVAWVVMVVVAMGVMVGA 172 (368)
Q Consensus 155 ~vlw~vi~l~~~g~~aG~ 172 (368)
+++|+.+.+ ..|..+|.
T Consensus 164 ~~~W~~~~~-~~Gy~~g~ 180 (219)
T PRK10847 164 ALLWVLLFT-YAGYFFGT 180 (219)
T ss_pred HHHHHHHHH-HHHHHHcC
Confidence 445555433 33655554
No 117
>PF10969 DUF2771: Protein of unknown function (DUF2771); InterPro: IPR024495 This bacterial family of proteins has no known function.
Probab=24.60 E-value=63 Score=29.42 Aligned_cols=50 Identities=22% Similarity=0.320 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhchhhhhhhhccCCCcccccCCCCcEEEEEEEEEec
Q 017674 182 VVLVAVAAVVGPLFIGMIWNCVWGRRGLLGFVKKYPDTELRGAIDGQYVKVTGVVTCG 239 (368)
Q Consensus 182 ~ll~~~~~lf~~v~a~~iWN~~~~~~~i~rfl~r~Pdt~lr~a~dGq~VKItG~VtCG 239 (368)
+|+++++++++++++...|+...+. -.+.| ++.-.-+|+++.|.=.--|=
T Consensus 6 ~i~avvvV~~~a~~g~~~~~~~~~~------~p~~p--~It~~s~g~~~~V~P~~~Cd 55 (161)
T PF10969_consen 6 LIAAVVVVVAAAVVGVGWWQLRRGS------DPQDP--EITAYSDGELVEVGPYQYCD 55 (161)
T ss_pred hhHHHHHHHHHHHHHHHHHHhCCCC------CCCCc--EEEEEECCcEEEECCeeeec
Confidence 3445555555666655567643221 12233 44445699999987666663
No 118
>COG4965 TadB Flp pilus assembly protein TadB [Intracellular trafficking and secretion]
Probab=24.55 E-value=93 Score=31.59 Aligned_cols=14 Identities=29% Similarity=0.515 Sum_probs=11.9
Q ss_pred hhhhhhhhccCCCc
Q 017674 206 RRGLLGFVKKYPDT 219 (368)
Q Consensus 206 ~~~i~rfl~r~Pdt 219 (368)
+|...+|..-+|++
T Consensus 128 ~rr~krf~~qlP~a 141 (309)
T COG4965 128 ARRLKRFGQQLPEA 141 (309)
T ss_pred HHHHHHHHHHhhHH
Confidence 67788999999986
No 119
>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=24.50 E-value=90 Score=30.91 Aligned_cols=32 Identities=16% Similarity=0.204 Sum_probs=25.2
Q ss_pred chhhHHHHHHHHHHHHHhhheehheehhHHHHH
Q 017674 153 SRAVAWVVMVVVAMGVMVGAFLMVAVKKAVVLV 185 (368)
Q Consensus 153 pk~vlw~vi~l~~~g~~aG~f~l~av~~~~ll~ 185 (368)
|+.+.|..+..++++++.|.++. ...+|.+|+
T Consensus 92 ~~~v~~~~~~~~~~a~~~Gl~L~-~~~g~~~l~ 123 (304)
T PRK07419 92 KSLVFWLANLFLLLGLLGILAIA-LQSDWTVLG 123 (304)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HhhcHHHHH
Confidence 78999999999999999988665 456665543
No 120
>PRK12392 bacteriochlorophyll c synthase; Provisional
Probab=24.46 E-value=1.2e+02 Score=30.48 Aligned_cols=24 Identities=17% Similarity=0.552 Sum_probs=18.3
Q ss_pred chhhHHHHHHHHHHHHHhhheehh
Q 017674 153 SRAVAWVVMVVVAMGVMVGAFLMV 176 (368)
Q Consensus 153 pk~vlw~vi~l~~~g~~aG~f~l~ 176 (368)
|+.+++..+++++.|++.|.++..
T Consensus 94 ~~~al~~~~~l~~la~~lg~~L~~ 117 (331)
T PRK12392 94 EKEALWNSIIVLLLAIGLGVWLGL 117 (331)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 567778888888888888866543
No 121
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=23.88 E-value=88 Score=31.37 Aligned_cols=13 Identities=8% Similarity=0.207 Sum_probs=6.2
Q ss_pred HHHHHHHhhhhhh
Q 017674 191 VGPLFIGMIWNCV 203 (368)
Q Consensus 191 f~~v~a~~iWN~~ 203 (368)
+++++++++|-++
T Consensus 27 ~~~~~~~l~~~~~ 39 (421)
T TIGR03794 27 GVIVVAALAWGIF 39 (421)
T ss_pred HHHHHHHHHHHhh
Confidence 3444445556443
No 122
>PF06993 DUF1304: Protein of unknown function (DUF1304); InterPro: IPR009732 This family consists of several hypothetical bacterial proteins of around 120 residues in length. The function of this family is unknown.
Probab=23.83 E-value=1.7e+02 Score=25.25 Aligned_cols=41 Identities=15% Similarity=0.028 Sum_probs=26.7
Q ss_pred HHHHHHHHhhheehheehhHHHHHHHHHHHHHHHHHhhhhhh
Q 017674 162 VVVAMGVMVGAFLMVAVKKAVVLVAVAAVVGPLFIGMIWNCV 203 (368)
Q Consensus 162 ~l~~~g~~aG~f~l~av~~~~ll~~~~~lf~~v~a~~iWN~~ 203 (368)
..+++|++.|.++.-. .-..-+++..+.+.+++|+..+-+.
T Consensus 52 gfLavgll~gl~~~~~-~~~~~~~~~~l~~~~~aa~yg~~T~ 92 (113)
T PF06993_consen 52 GFLAVGLLWGLFILNS-VAGLTLVLFFLGCMIVAAIYGALTS 92 (113)
T ss_pred HHHHHHHHHHHHhccc-hHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5678888888888777 2233444555666666666666544
No 123
>PF01957 NfeD: NfeD-like C-terminal, partner-binding; InterPro: IPR002810 The nfe genes (nfeA, nfeB, and nfeD) are involved in the nodulation efficiency and competitiveness of Rhizobium meliloti (Sinorhizobium meliloti) (Rhizobium meliloti) on alfalfa roots []. The specific function of this family is unknown although it is unlikely that NfeD is specifically involved in nodulation as the family contains several different archaeal and bacterial species most of which are not symbionts. This entry describes archaeal and bacterial proteins which are variously described, examples are: nodulation protein, nodulation efficiency protein D (nfeD), hypothetical protein and membrane-bound serine protease (ClpP class). A number of these proteins are classified in MEROPS peptidase family S49 as non-peptidase homologues or as unassigned peptidases. ; PDB: 2K5H_A 3CP0_A 2EXD_A.
Probab=23.74 E-value=69 Score=26.51 Aligned_cols=22 Identities=27% Similarity=0.438 Sum_probs=12.6
Q ss_pred ccceeeeeEeecEEEEecCCceeEEEEecCC
Q 017674 280 WGSRHLEKYVSDFYISDFQSGLRALVKAGYG 310 (368)
Q Consensus 280 W~lr~~E~~~~DFYIsDfqSG~RAlVKaG~G 310 (368)
|+-+..+. .+.|.+..|-.-+|
T Consensus 114 w~A~s~~~---------i~~G~~V~Vv~v~g 135 (144)
T PF01957_consen 114 WRARSEDE---------IPKGDRVRVVGVEG 135 (144)
T ss_dssp EEEEESST---------B-TT-EEEEEEEES
T ss_pred EEEEeCCC---------CCCCCEEEEEEEEC
Confidence 88877765 44577766644444
No 124
>TIGR01522 ATPase-IIA2_Ca golgi membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1 the former of which is modelled by TIGR01116.
Probab=23.66 E-value=1.9e+02 Score=32.42 Aligned_cols=33 Identities=15% Similarity=0.103 Sum_probs=16.1
Q ss_pred hhhhhhchhhhhhhhccCCCcccccCCCCcEEEE
Q 017674 199 IWNCVWGRRGLLGFVKKYPDTELRGAIDGQYVKV 232 (368)
Q Consensus 199 iWN~~~~~~~i~rfl~r~Pdt~lr~a~dGq~VKI 232 (368)
.|.-+..++.+....+..|.. ..-.|||+...|
T Consensus 98 ~~qe~~a~~~l~~L~~l~~~~-~~ViRdg~~~~I 130 (884)
T TIGR01522 98 FVQEYRSEKSLEALNKLVPPE-CHLIREGKLEHV 130 (884)
T ss_pred HHHHHHHHHHHHHHhccCCCe-eEEEECCEEEEE
Confidence 345555566666555444543 233345544443
No 125
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.64 E-value=53 Score=29.25 Aligned_cols=16 Identities=25% Similarity=0.711 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHhhhe
Q 017674 158 WVVMVVVAMGVMVGAF 173 (368)
Q Consensus 158 w~vi~l~~~g~~aG~f 173 (368)
|-+|++...||+||.+
T Consensus 75 wglIv~lllGf~AG~l 90 (116)
T COG5336 75 WGLIVFLLLGFGAGVL 90 (116)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444444444433
No 126
>PRK10617 cytochrome c-type protein NapC; Provisional
Probab=23.15 E-value=61 Score=30.71 Aligned_cols=10 Identities=20% Similarity=0.338 Sum_probs=5.4
Q ss_pred EEEecccccc
Q 017674 235 VVTCGSIPLE 244 (368)
Q Consensus 235 ~VtCG~~PLe 244 (368)
+++|.+=-|.
T Consensus 84 ~a~C~DCH~P 93 (200)
T PRK10617 84 RATCPDCHVP 93 (200)
T ss_pred CCcCcccCCC
Confidence 3567655443
No 127
>PF15125 TMEM238: TMEM238 protein family
Probab=23.14 E-value=1.8e+02 Score=23.76 Aligned_cols=37 Identities=22% Similarity=0.327 Sum_probs=19.8
Q ss_pred hhHHHHHHHHHHH---HHhhheehheehhHHHHHHHHHHHHH
Q 017674 155 AVAWVVMVVVAMG---VMVGAFLMVAVKKAVVLVAVAAVVGP 193 (368)
Q Consensus 155 ~vlw~vi~l~~~g---~~aG~f~l~av~~~~ll~~~~~lf~~ 193 (368)
.++|..++.=++| +++|.|.=. -=+=+|+-.++++.+
T Consensus 5 ~~f~laV~fD~vGl~~Ll~GiFa~l--~f~D~lvY~Galiif 44 (65)
T PF15125_consen 5 HFFWLAVVFDVVGLVMLLTGIFAPL--DFYDFLVYTGALIIF 44 (65)
T ss_pred ehhHHHHHHHHhhHHHHHHHHhcch--hHHHHHHHHhHHHHH
Confidence 4566666555666 566776544 333445544444433
No 128
>TIGR00267 conserved hypothetical protein TIGR00267. This family is represented in three of the first four completed archaeal genomes, with two members in A. fulgidus.
Probab=22.84 E-value=1.7e+02 Score=26.62 Aligned_cols=13 Identities=8% Similarity=0.238 Sum_probs=5.2
Q ss_pred HHHHHHHHHHhhh
Q 017674 160 VMVVVAMGVMVGA 172 (368)
Q Consensus 160 vi~l~~~g~~aG~ 172 (368)
..+.-+..+++|+
T Consensus 91 aAl~sgls~~~g~ 103 (169)
T TIGR00267 91 SGFIDGFSTFMGS 103 (169)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333444443
No 129
>PF07332 DUF1469: Protein of unknown function (DUF1469); InterPro: IPR009937 This entry represents proteins found in hypothetical bacterial proteins where is is annotated as ycf49 or ycf49-like. The function is not known.
Probab=22.53 E-value=2.5e+02 Score=23.23 Aligned_cols=24 Identities=13% Similarity=0.009 Sum_probs=11.8
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhh
Q 017674 179 KKAVVLVAVAAVVGPLFIGMIWNC 202 (368)
Q Consensus 179 ~~~~ll~~~~~lf~~v~a~~iWN~ 202 (368)
+.|..+.++++++.+++++++|..
T Consensus 70 ~~~~a~liv~~~~l~la~i~~~~~ 93 (121)
T PF07332_consen 70 PPWLAFLIVAGLYLLLALILLLIG 93 (121)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444455555555554454433
No 130
>PF14654 Epiglycanin_C: Mucin, catalytic, TM and cytoplasmic tail region
Probab=22.41 E-value=56 Score=28.66 Aligned_cols=15 Identities=47% Similarity=0.831 Sum_probs=7.6
Q ss_pred HHHHHHHHHHhhhee
Q 017674 160 VMVVVAMGVMVGAFL 174 (368)
Q Consensus 160 vi~l~~~g~~aG~f~ 174 (368)
+.++++|||.||-|+
T Consensus 26 asVvvavGl~aGLfF 40 (106)
T PF14654_consen 26 ASVVVAVGLFAGLFF 40 (106)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444555555555444
No 131
>PF09527 ATPase_gene1: Putative F0F1-ATPase subunit (ATPase_gene1)
Probab=22.25 E-value=1.9e+02 Score=21.24 Aligned_cols=45 Identities=11% Similarity=0.156 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHhhheehheehhHHHHHHHHHHHHHHHHHhhhhhh
Q 017674 157 AWVVMVVVAMGVMVGAFLMVAVKKAVVLVAVAAVVGPLFIGMIWNCV 203 (368)
Q Consensus 157 lw~vi~l~~~g~~aG~f~l~av~~~~ll~~~~~lf~~v~a~~iWN~~ 203 (368)
-+.+++-.++|+.+|-++=--.++.-++.++++++++++++ ||.+
T Consensus 7 g~~~~~~i~~g~~~G~~lD~~~~t~p~~~~~g~llG~~~g~--~~~~ 51 (55)
T PF09527_consen 7 GFTMAAPILVGFFLGYWLDKWFGTSPWFTLIGLLLGIAAGF--YNVY 51 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHH--HHHH
Confidence 34556666677888888777777766777777777776653 4444
No 132
>PF06912 DUF1275: Protein of unknown function (DUF1275); InterPro: IPR010699 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown although a few members are thought to be membrane proteins.
Probab=22.22 E-value=1.4e+02 Score=26.99 Aligned_cols=37 Identities=14% Similarity=0.229 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHhhheehheehhHHHHHHHHHHHHH
Q 017674 157 AWVVMVVVAMGVMVGAFLMVAVKKAVVLVAVAAVVGP 193 (368)
Q Consensus 157 lw~vi~l~~~g~~aG~f~l~av~~~~ll~~~~~lf~~ 193 (368)
...+++.|+.|-++|+++.-..+-+.++++++.++..
T Consensus 168 ~~~~i~~f~~Ga~~ga~l~~~~~~~al~~~~~~l~~~ 204 (209)
T PF06912_consen 168 YLLIILSFFIGAILGALLYRRLGFWALLLPALLLLLL 204 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3445666777888888887777755555555444443
No 133
>cd04483 hOBFC1_like hOBFC1_like: A subfamily of OB folds similar to that found in human OB fold containing protein 1 (hOBFC1). Members of this group belong to the Replication protein A subunit 2 (RPA2) family of OB folds. RPA is a nuclear ssDNA binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). The OB fold domain of RPA2 has dual roles in ssDNA binding and trimerization.
Probab=22.06 E-value=97 Score=25.45 Aligned_cols=19 Identities=16% Similarity=0.272 Sum_probs=15.3
Q ss_pred ccccCCCCcEEEEEEEEEe
Q 017674 220 ELRGAIDGQYVKVTGVVTC 238 (368)
Q Consensus 220 ~lr~a~dGq~VKItG~VtC 238 (368)
....++.|++|||.|.+.+
T Consensus 59 ~~~~i~~G~vvrV~G~i~~ 77 (92)
T cd04483 59 QAKVLEIGDLLRVRGSIRT 77 (92)
T ss_pred cccccCCCCEEEEEEEEec
Confidence 4446899999999998764
No 134
>PF07178 TraL: TraL protein; InterPro: IPR009838 This entry represents bacterial TraL proteins. TraL is a predicted peripheral membrane protein involved in bacterial sex pilus assembly []. TraL is part of the type IV secretion system for conjugative plasmid transfer []. The exact function of TraL is unknown.; GO: 0000746 conjugation, 0019867 outer membrane
Probab=22.00 E-value=1.4e+02 Score=24.66 Aligned_cols=12 Identities=33% Similarity=0.531 Sum_probs=9.3
Q ss_pred hhccCCCccccc
Q 017674 212 FVKKYPDTELRG 223 (368)
Q Consensus 212 fl~r~Pdt~lr~ 223 (368)
++|+.||+..|.
T Consensus 81 ~~k~~P~S~~R~ 92 (95)
T PF07178_consen 81 FFKRTPPSFIRY 92 (95)
T ss_pred ccccCcCHHHhh
Confidence 478889988775
No 135
>PF04120 Iron_permease: Low affinity iron permease ; InterPro: IPR007251 Although originally identified as a low-affinity iron(II) permease [, ], Fet4 has since been shown to import several other transition metal ions, including copper [, ] and zinc []. Copper, cobalt, and cadmium inhibit Fet4 [, ]. Fet4 is an integral protein of the plasma membrane [, ]. FET4 is not essential, not even in fet3 fet4 double mutants []. Over expression of FET4 improves growth under alkaline conditions []. Transcription of FET4 is induced by Aft1 in response to low levels of iron [, , ] or by Zap1 in response to low zinc [, ], but not in response to low copper []. When the high-affinity iron permease component Fet3 is deleted, FET4 is induced by the addition of copper, zinc, cobalt, or manganese []. It is also induced under anaerobic conditions [, , ] and repressed by Rox1 in aerobic conditions [, ]. Rox1 attenuates the activation of FET4 by Aft1 or Zap1 []. ; GO: 0055085 transmembrane transport
Probab=21.91 E-value=2.4e+02 Score=25.36 Aligned_cols=58 Identities=14% Similarity=0.119 Sum_probs=38.8
Q ss_pred hhHHHHHHHHHHHHHhhheehheehhHHHHHH-HHHHHHHHHHHhhhhhhhc-hhhhhhh
Q 017674 155 AVAWVVMVVVAMGVMVGAFLMVAVKKAVVLVA-VAAVVGPLFIGMIWNCVWG-RRGLLGF 212 (368)
Q Consensus 155 ~vlw~vi~l~~~g~~aG~f~l~av~~~~ll~~-~~~lf~~v~a~~iWN~~~~-~~~i~rf 212 (368)
+...++.++.+.+.++.+.++.-=..|-|++= ...++.+...++|=|..++ .+++...
T Consensus 15 ~~~f~~~~~~Ii~W~i~Gp~~~~sdtWQLviNt~ttIitFlmvfLIQn~q~Rd~~al~~K 74 (132)
T PF04120_consen 15 PWAFVIAVAVIIVWAISGPVFGFSDTWQLVINTATTIITFLMVFLIQNTQNRDTKALQAK 74 (132)
T ss_pred HHHHHHHHHHHHHHHHHhccccCcchHHHHHccHHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 44556677777888888888877778887773 3445566666777787777 4444333
No 136
>cd00780 NTF2 Nuclear transport factor 2 (NTF2) domain plays an important role in the trafficking of macromolecules, ions and small molecules between the cytoplasm and nucleus. This bi-directional transport of macromolecules across the nuclear envelope requires many soluble factors that includes GDP-binding protein Ran (RanGDP). RanGDP is required for both import and export of proteins and poly(A) RNA. RanGDP also has been implicated in cell cycle control, specifically in mitotic spindle assembly. In interphase cells, RanGDP is predominately nuclear and thought to be GTP bound, but it is also present in the cytoplasm, probably in the GDP-bound state. NTF2 mediates the nuclear import of RanGDP. NTF2 binds to both RanGDP and FxFG repeat-containing nucleoporins.
Probab=21.90 E-value=62 Score=26.57 Aligned_cols=44 Identities=23% Similarity=0.262 Sum_probs=30.9
Q ss_pred Hhhhhh---hhchhhhhhhhccCC--Cccc--c-----cC-CCCcEEEEEEEEEecc
Q 017674 197 GMIWNC---VWGRRGLLGFVKKYP--DTEL--R-----GA-IDGQYVKVTGVVTCGS 240 (368)
Q Consensus 197 ~~iWN~---~~~~~~i~rfl~r~P--dt~l--r-----~a-~dGq~VKItG~VtCG~ 240 (368)
.|.|+- +.++.+|..+|...| .++. . .. -.+=+|.|+|.|+.++
T Consensus 33 ~~~~~~~~~~~g~~~I~~~l~~lp~~~~~~~i~~~d~q~~~~~~ili~V~G~~~~~~ 89 (119)
T cd00780 33 MLSREGMKQVTGRDAIVEKLSSLPFQKTKHKITTVDSQPTPSGGVIVMVTGSLKLDE 89 (119)
T ss_pred EEEECCceEecCHHHHHHHHHhCCCcceEEEEEEEeeeEcCCCCEEEEEEEEEEECC
Confidence 445533 667889999999999 4322 1 12 2667889999999886
No 137
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=21.79 E-value=1.1e+02 Score=25.07 Aligned_cols=21 Identities=0% Similarity=0.060 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHhhhhhhhchh
Q 017674 187 VAAVVGPLFIGMIWNCVWGRR 207 (368)
Q Consensus 187 ~~~lf~~v~a~~iWN~~~~~~ 207 (368)
.+++.++|+++++|-+|.+++
T Consensus 7 Li~ICVaii~lIlY~iYnr~~ 27 (68)
T PF05961_consen 7 LIIICVAIIGLILYGIYNRKK 27 (68)
T ss_pred HHHHHHHHHHHHHHHHHhccc
Confidence 344556777889998888743
No 138
>PF03302 VSP: Giardia variant-specific surface protein; InterPro: IPR005127 During infection, the intestinal protozoan parasite Giardia lamblia virus undergoes continuous antigenic variation which is determined by diversification of the parasite's major surface antigen, named VSP (variant surface protein).
Probab=21.55 E-value=49 Score=33.83 Aligned_cols=17 Identities=29% Similarity=0.386 Sum_probs=10.5
Q ss_pred cccCCcccccccccccc
Q 017674 36 PYTGGDVKKSGELGKMF 52 (368)
Q Consensus 36 PYTGGDikkSGELGkMf 52 (368)
-|-||.-+.+-..|+..
T Consensus 216 l~~GGCY~~~~~PG~~v 232 (397)
T PF03302_consen 216 LYKGGCYSTSKAPGNSV 232 (397)
T ss_pred hhcCcccccccCCCcch
Confidence 45677776666666543
No 139
>PF05884 ZYG-11_interact: Interactor of ZYG-11; InterPro: IPR008574 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=21.46 E-value=1e+02 Score=31.35 Aligned_cols=59 Identities=10% Similarity=0.292 Sum_probs=39.4
Q ss_pred ccccccCcceeeeee-echhhHHHHHHHHHHH--HHhhheehheehhHHHHHHHHHHHHHHH
Q 017674 137 SAVTSLGEDVKVGFR-VSRAVAWVVMVVVAMG--VMVGAFLMVAVKKAVVLVAVAAVVGPLF 195 (368)
Q Consensus 137 ~avt~l~~~~~~~~~-vpk~vlw~vi~l~~~g--~~aG~f~l~av~~~~ll~~~~~lf~~v~ 195 (368)
.++..++...+.... |-+...|.-++|++.+ ...|+.+|.-+-.-++.=+..++++.++
T Consensus 86 ~al~D~s~P~~~~~~~i~~tF~~ssIlLl~~Siss~iG~YiLapl~~~i~~~~gAaila~iv 147 (299)
T PF05884_consen 86 NALQDTSPPEKLSTSSIVETFSWSSILLLGFSISSFIGGYILAPLFGIIFGPFGAAILAYIV 147 (299)
T ss_pred HHHHhcCCCcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 344555544444444 7778899999998887 6889999987766555544444444444
No 140
>PRK10755 sensor protein BasS/PmrB; Provisional
Probab=21.33 E-value=1.9e+02 Score=27.18 Aligned_cols=20 Identities=10% Similarity=0.074 Sum_probs=10.2
Q ss_pred EeecCCCCCCCHHHHHHHhh
Q 017674 323 VNITKGNRDLSPSFLRWLAD 342 (368)
Q Consensus 323 vd~~~~~kdlS~~f~~WL~e 342 (368)
+.+...-..++++-..-+-+
T Consensus 282 i~V~D~G~Gi~~~~~~~if~ 301 (356)
T PRK10755 282 LAVEDEGPGIDESKCGELSK 301 (356)
T ss_pred EEEEECCCCCCHHHHHHhCC
Confidence 44444435577765544433
No 141
>PF11239 DUF3040: Protein of unknown function (DUF3040); InterPro: IPR021401 Some members in this family of proteins with unknown function are annotated as membrane proteins however this cannot be confirmed.
Probab=21.10 E-value=1.7e+02 Score=23.40 Aligned_cols=6 Identities=17% Similarity=0.573 Sum_probs=2.3
Q ss_pred HHhhhe
Q 017674 168 VMVGAF 173 (368)
Q Consensus 168 ~~aG~f 173 (368)
+++|.+
T Consensus 56 lv~G~~ 61 (82)
T PF11239_consen 56 LVAGVV 61 (82)
T ss_pred HHHHHH
Confidence 333433
No 142
>PHA03049 IMV membrane protein; Provisional
Probab=20.99 E-value=98 Score=25.37 Aligned_cols=21 Identities=0% Similarity=-0.002 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHhhhhhhhchh
Q 017674 187 VAAVVGPLFIGMIWNCVWGRR 207 (368)
Q Consensus 187 ~~~lf~~v~a~~iWN~~~~~~ 207 (368)
.+++.++|+++++|-+|.+++
T Consensus 7 l~iICVaIi~lIvYgiYnkk~ 27 (68)
T PHA03049 7 LVIICVVIIGLIVYGIYNKKT 27 (68)
T ss_pred HHHHHHHHHHHHHHHHHhccc
Confidence 344556777888898888754
No 143
>PF09991 DUF2232: Predicted membrane protein (DUF2232); InterPro: IPR018710 This family of bacterial and eukaryotic proteins has no known fucntion; however this signature belongs to a Pfam Gx transporter clan.
Probab=20.93 E-value=2e+02 Score=26.52 Aligned_cols=24 Identities=29% Similarity=0.805 Sum_probs=19.5
Q ss_pred eeechhhHHHHHHHHHHHHHhhhe
Q 017674 150 FRVSRAVAWVVMVVVAMGVMVGAF 173 (368)
Q Consensus 150 ~~vpk~vlw~vi~l~~~g~~aG~f 173 (368)
+++|+..+|.+++..+..+..+.+
T Consensus 200 ~~lP~~~~~~~i~~~~~~l~~~~~ 223 (290)
T PF09991_consen 200 WRLPRWLIWLLIVALALSLVGGGF 223 (290)
T ss_pred HhCcHHHHHHHHHHHHHHHHhccc
Confidence 559999999999988888775544
No 144
>PRK12872 ubiA prenyltransferase; Reviewed
Probab=20.71 E-value=1.5e+02 Score=27.88 Aligned_cols=34 Identities=12% Similarity=0.324 Sum_probs=25.0
Q ss_pred hhhHHHHHHHHHHHHHhhheehheehhHHHHHHH
Q 017674 154 RAVAWVVMVVVAMGVMVGAFLMVAVKKAVVLVAV 187 (368)
Q Consensus 154 k~vlw~vi~l~~~g~~aG~f~l~av~~~~ll~~~ 187 (368)
+.......++++.++++|.+++...+|+..++..
T Consensus 77 ~~~~~~~~~l~~i~~~~~~~l~~~~~~~~~~~~~ 110 (285)
T PRK12872 77 TKAYGLFLLLNVLGLYLGAYLLAVIGGPKFALIF 110 (285)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 4555666677888889999988888888666543
No 145
>PHA00736 hypothetical protein
Probab=20.71 E-value=1.8e+02 Score=24.05 Aligned_cols=52 Identities=23% Similarity=0.460 Sum_probs=26.1
Q ss_pred hhHHHHHHHHHHHH---HhhheehheehhHHHHHHHHHHHHHHHHHhhh-hhhhchhhhhhhhcc
Q 017674 155 AVAWVVMVVVAMGV---MVGAFLMVAVKKAVVLVAVAAVVGPLFIGMIW-NCVWGRRGLLGFVKK 215 (368)
Q Consensus 155 ~vlw~vi~l~~~g~---~aG~f~l~av~~~~ll~~~~~lf~~v~a~~iW-N~~~~~~~i~rfl~r 215 (368)
+++=+++.+..||+ +|| +-+.++. +....++.-++-| -.+|+-..|++.++.
T Consensus 15 pvi~viiil~mmgltykmag-------kipaii~--giastf~lmfmdflplfwgi~vifgliag 70 (79)
T PHA00736 15 PVIAIIIILAMMGLTYKMAG-------KIPAILV--GIASTFTLMFMDFLPLFWGITVIFGLIAG 70 (79)
T ss_pred cHHHHHHHHHHHhhHHHHhC-------CccHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55667788888886 333 2222222 2222333323333 456666666665543
No 146
>cd04486 YhcR_OBF_like YhcR_OBF_like: A subfamily of OB-fold domains similar to the OB folds of Bacillus subtilis YhcR. YhcR is a sugar-nonspecific nuclease, which is active in the presence of Ca2+ and Mn2+. It cleaves RNA endonucleolytically, producing 3'-monophosphate nucleosides. YhcR appears to be the major Ca2+ activated nuclease of B. subtilis. YhcR may be localized in the cell wall.
Probab=20.51 E-value=99 Score=24.71 Aligned_cols=16 Identities=44% Similarity=0.582 Sum_probs=13.6
Q ss_pred ccCCCCcEEEEEEEEE
Q 017674 222 RGAIDGQYVKVTGVVT 237 (368)
Q Consensus 222 r~a~dGq~VKItG~Vt 237 (368)
..++.|+.|.|+|+|+
T Consensus 43 ~~~~~Gd~V~vtG~v~ 58 (78)
T cd04486 43 ADVAVGDLVRVTGTVT 58 (78)
T ss_pred CCCCCCCEEEEEEEEE
Confidence 4568899999999975
No 147
>PRK03818 putative transporter; Validated
Probab=20.46 E-value=1.3e+02 Score=32.05 Aligned_cols=34 Identities=18% Similarity=0.489 Sum_probs=26.2
Q ss_pred eeeeeechhhHH------HHHHHHHHHHHhhheehheehh
Q 017674 147 KVGFRVSRAVAW------VVMVVVAMGVMVGAFLMVAVKK 180 (368)
Q Consensus 147 ~~~~~vpk~vlw------~vi~l~~~g~~aG~f~l~av~~ 180 (368)
.|++++|..+.+ ..+-++++|+-+|--++.++++
T Consensus 49 ~~~~~~~~~~~~~~~~~gl~lFv~~vGl~~Gp~f~~~l~~ 88 (552)
T PRK03818 49 QFGLTLDSDMLHFIQEFGLILFVYTIGIQVGPGFFSSLRK 88 (552)
T ss_pred ccCcccChHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHH
Confidence 467777887544 4566777889999999999987
No 148
>PF12650 DUF3784: Domain of unknown function (DUF3784); InterPro: IPR017259 This group represents an uncharacterised conserved protein.
Probab=20.35 E-value=1.4e+02 Score=24.28 Aligned_cols=15 Identities=13% Similarity=0.191 Sum_probs=6.9
Q ss_pred HHHhhheehheehhH
Q 017674 167 GVMVGAFLMVAVKKA 181 (368)
Q Consensus 167 g~~aG~f~l~av~~~ 181 (368)
.++++++.-.-..++
T Consensus 56 ~~li~~l~~~~~~~~ 70 (97)
T PF12650_consen 56 ILLIGGLLSFFQSNW 70 (97)
T ss_pred HHHHHHHHHHhchhH
Confidence 355555533333344
No 149
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=20.29 E-value=2.4e+02 Score=25.02 Aligned_cols=7 Identities=29% Similarity=0.520 Sum_probs=2.6
Q ss_pred hhhccCC
Q 017674 211 GFVKKYP 217 (368)
Q Consensus 211 rfl~r~P 217 (368)
.++.+.|
T Consensus 59 ~~~~~~~ 65 (191)
T PF04156_consen 59 CLLSKRP 65 (191)
T ss_pred HHHHccc
Confidence 3333333
No 150
>TIGR02161 napC_nirT periplasmic nitrate (or nitrite) reductase c-type cytochrome, NapC/NirT family. Nearly every member of this subfamily is NapC, a predicted membrane-anchored four-heme c-type cytochrome that forms one component of the periplasmic nitrate reductase along with NapA, NapB, NapD, NapE, and NapF subunits. A single known exception at this time is NirT, which is instead a component of a nitrite reductase. This family excludes TorC subunits of trimethylamine N-oxide (TMAO) reductases.
Probab=20.28 E-value=74 Score=29.66 Aligned_cols=8 Identities=25% Similarity=0.526 Sum_probs=4.1
Q ss_pred EEeccccc
Q 017674 236 VTCGSIPL 243 (368)
Q Consensus 236 VtCG~~PL 243 (368)
|+|.+=-+
T Consensus 76 a~C~dCH~ 83 (185)
T TIGR02161 76 ATCPDCHV 83 (185)
T ss_pred ccCcccCC
Confidence 56665433
No 151
>PRK12504 putative monovalent cation/H+ antiporter subunit B; Reviewed
Probab=20.09 E-value=1.7e+02 Score=27.32 Aligned_cols=40 Identities=8% Similarity=0.067 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHhhheehheehhHHHHHHHHHHHHHHHH
Q 017674 157 AWVVMVVVAMGVMVGAFLMVAVKKAVVLVAVAAVVGPLFI 196 (368)
Q Consensus 157 lw~vi~l~~~g~~aG~f~l~av~~~~ll~~~~~lf~~v~a 196 (368)
.|.+-.+++..++++++..+..+|.+-.++..+++++.++
T Consensus 3 ~~~~~~~l~~~ll~~a~~~v~~r~~l~av~~~~~~gl~~a 42 (178)
T PRK12504 3 GTIINAALLLFLVATAVATALLRDVLASIVVFAAFSLGMA 42 (178)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 3556666666677777777777777666666555555553
Done!