Query 017674
Match_columns 368
No_of_seqs 56 out of 58
Neff 3.2
Searched_HMMs 29240
Date Mon Mar 25 03:08:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017674.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017674hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l2t_A Receptor tyrosine-prote 64.3 5.8 0.0002 28.6 3.2 30 181-210 11-40 (44)
2 2ks1_B Epidermal growth factor 61.6 4.1 0.00014 29.3 2.0 30 181-210 12-41 (44)
3 2jwa_A Receptor tyrosine-prote 57.5 8.8 0.0003 27.7 3.2 29 181-210 13-41 (44)
4 3uaf_A TTR-52; beta barrel/san 33.4 22 0.00074 29.7 2.4 27 228-262 3-29 (117)
5 2vpz_C Hypothetical membrane s 30.4 59 0.002 29.4 4.9 34 138-178 3-37 (253)
6 1pi7_A VPU protein, U ORF prot 30.3 49 0.0017 22.9 3.3 21 185-205 7-27 (36)
7 3udc_A Small-conductance mecha 29.1 97 0.0033 28.3 6.2 44 183-233 94-138 (285)
8 2hpu_A NOSL protein; alpha bet 25.3 20 0.00067 31.7 0.8 100 247-357 15-140 (175)
9 3zqp_A Terminase small subunit 24.8 15 0.00053 32.5 0.0 27 284-310 27-53 (164)
10 2knc_B Integrin beta-3; transm 24.6 69 0.0023 25.1 3.7 24 196-219 28-54 (79)
11 2vv5_A MSCS, small-conductance 23.3 1.7E+02 0.0058 26.8 6.7 26 331-356 252-279 (286)
12 1zrj_A E1B-55KDA-associated pr 22.6 18 0.00063 26.4 0.0 16 334-349 16-31 (50)
13 3j1r_A Archaeal adhesion filam 22.2 82 0.0028 20.6 3.0 19 182-200 4-22 (26)
14 3fiq_A OBP1, RCG36470, odorant 21.8 1.6E+02 0.0055 24.1 5.6 95 237-354 47-149 (157)
15 2vl6_A SSO MCM N-TER, minichro 21.2 1.2E+02 0.0041 27.4 5.2 34 222-258 223-256 (268)
16 3rlf_F Maltose transport syste 20.8 1.1E+02 0.0036 30.9 5.1 41 154-194 13-53 (514)
17 4aw6_A CAAX prenyl protease 1 20.7 63 0.0022 32.6 3.5 16 208-223 221-236 (482)
No 1
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=64.32 E-value=5.8 Score=28.58 Aligned_cols=30 Identities=7% Similarity=0.209 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhchhhhh
Q 017674 181 AVVLVAVAAVVGPLFIGMIWNCVWGRRGLL 210 (368)
Q Consensus 181 ~~ll~~~~~lf~~v~a~~iWN~~~~~~~i~ 210 (368)
+|..-|+++++++++.++.|-+||+||.+.
T Consensus 11 aIA~gVVgGv~~v~ii~~~~~~~~RRRr~~ 40 (44)
T 2l2t_A 11 LIAAGVIGGLFILVIVGLTFAVYVRRKSIK 40 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCSS
T ss_pred eEEEeehHHHHHHHHHHHHHHHHhhhhhhh
Confidence 344555665666656566776777765544
No 2
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=61.64 E-value=4.1 Score=29.27 Aligned_cols=30 Identities=17% Similarity=0.180 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhchhhhh
Q 017674 181 AVVLVAVAAVVGPLFIGMIWNCVWGRRGLL 210 (368)
Q Consensus 181 ~~ll~~~~~lf~~v~a~~iWN~~~~~~~i~ 210 (368)
+|..-|+++++++++.+++|-+||+|+.+.
T Consensus 12 ~IA~gVVgGv~~~~ii~~~~~~~~RRr~~~ 41 (44)
T 2ks1_B 12 SIATGMVGALLLLLVVALGIGLFMRRRHIV 41 (44)
T ss_dssp SSTHHHHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred eEEeehhHHHHHHHHHHHHHHHHhhhhHhh
Confidence 344556665666555566776777765543
No 3
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=57.48 E-value=8.8 Score=27.72 Aligned_cols=29 Identities=14% Similarity=0.352 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhchhhhh
Q 017674 181 AVVLVAVAAVVGPLFIGMIWNCVWGRRGLL 210 (368)
Q Consensus 181 ~~ll~~~~~lf~~v~a~~iWN~~~~~~~i~ 210 (368)
+|...|++ ++.+++.+++|-+|++||.+.
T Consensus 13 ~Ia~~vVG-vll~vi~~l~~~~~~RRR~~~ 41 (44)
T 2jwa_A 13 SIISAVVG-ILLVVVLGVVFGILIKRRQQK 41 (44)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHHHHHHCSC
T ss_pred chHHHHHH-HHHHHHHHHHHHhheehhhhh
Confidence 34455555 556666677777777766543
No 4
>3uaf_A TTR-52; beta barrel/sandwich, cell engulfment, secreted, protein BIN; 2.01A {Caenorhabditis elegans}
Probab=33.44 E-value=22 Score=29.71 Aligned_cols=27 Identities=26% Similarity=0.524 Sum_probs=20.0
Q ss_pred cEEEEEEEEEeccccccCccCCCCceeEEeeeEEE
Q 017674 228 QYVKVTGVVTCGSIPLESSYQRVPRCVYVSTELHE 262 (368)
Q Consensus 228 q~VKItG~VtCG~~PLess~qkv~rCVYtst~LyE 262 (368)
|-|-|+|+..||+.|- ++.+| -++|||
T Consensus 3 qsV~V~G~L~C~~~Pa--~~~~V------~V~L~d 29 (117)
T 3uaf_A 3 SCLMATGVLKCPTDPE--AVKKV------HIDLWD 29 (117)
T ss_dssp EEEEEEEEEECTTCGG--GGSSC------EEEEEE
T ss_pred EEEEEEEEEEeCCccC--CCCCE------EEEEEe
Confidence 7799999999999982 33344 356776
No 5
>2vpz_C Hypothetical membrane spanning protein; oxidoreductase, molybdopterin guanine dinucleotide, iron-sulfur, metal-binding, molybdopterin; HET: MGD; 2.40A {Thermus thermophilus} PDB: 2vpx_C* 2vpw_C* 2vpy_C*
Probab=30.35 E-value=59 Score=29.45 Aligned_cols=34 Identities=18% Similarity=0.082 Sum_probs=24.0
Q ss_pred cccccC-cceeeeeeechhhHHHHHHHHHHHHHhhheehhee
Q 017674 138 AVTSLG-EDVKVGFRVSRAVAWVVMVVVAMGVMVGAFLMVAV 178 (368)
Q Consensus 138 avt~l~-~~~~~~~~vpk~vlw~vi~l~~~g~~aG~f~l~av 178 (368)
.||+++ ++.-.| .|.+.-+|..|+.+|+|++++.
T Consensus 3 ~v~~~~~~~~~Wg-------~~i~~y~f~~g~aaG~~~~~~~ 37 (253)
T 2vpz_C 3 EFYGLPNAQEFWH-------WTNALHFVLVGLAGGVALLAAL 37 (253)
T ss_dssp EEESCCCCSCSSC-------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeeCCCCCCCCcc-------hHHHHHHHHHHHHHHHHHHHHH
Confidence 367777 554444 3677777888999999988764
No 6
>1pi7_A VPU protein, U ORF protein; alpha helix, viral protein; NMR {Human immunodeficiency virus 1} SCOP: j.35.1.1 PDB: 1pi8_A 1pje_A 2gof_A 2goh_A 2jpx_A
Probab=30.27 E-value=49 Score=22.91 Aligned_cols=21 Identities=29% Similarity=0.365 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHhhhhhhhc
Q 017674 185 VAVAAVVGPLFIGMIWNCVWG 205 (368)
Q Consensus 185 ~~~~~lf~~v~a~~iWN~~~~ 205 (368)
.+++.+++++.|.++|.+.+-
T Consensus 7 ~ivalivalIiaIVVWtiv~i 27 (36)
T 1pi7_A 7 AIVALVVAIIIAIVVWSIVII 27 (36)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 555566777778888866554
No 7
>3udc_A Small-conductance mechanosensitive channel, C-TER peptide from small-conductance...; membrane protein; 3.35A {Thermoanaerobacter tengcongensis} PDB: 3t9n_A*
Probab=29.11 E-value=97 Score=28.33 Aligned_cols=44 Identities=23% Similarity=0.129 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhc-hhhhhhhhccCCCcccccCCCCcEEEEE
Q 017674 183 VLVAVAAVVGPLFIGMIWNCVWG-RRGLLGFVKKYPDTELRGAIDGQYVKVT 233 (368)
Q Consensus 183 ll~~~~~lf~~v~a~~iWN~~~~-~~~i~rfl~r~Pdt~lr~a~dGq~VKIt 233 (368)
-|++.++++++++++-..++.-. =.++.=.+. +.++.|++|+|-
T Consensus 94 ~l~a~~g~~g~aig~a~q~~l~n~~~Gi~i~~~-------~pf~vGD~I~i~ 138 (285)
T 3udc_A 94 SLLAVAGIGSLAIGFGAQNLVKDMISGFFIIFE-------DQFSVGDYVTIN 138 (285)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHT-------TSCCTTCEEEET
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------CCccCCCEEEEC
Confidence 34555555566665554433322 233333333 256889998874
No 8
>2hpu_A NOSL protein; alpha beta topology, metal transport; NMR {Achromobacter cycloclastes} SCOP: d.357.1.1 PDB: 2hq3_A
Probab=25.29 E-value=20 Score=31.70 Aligned_cols=100 Identities=10% Similarity=0.046 Sum_probs=41.4
Q ss_pred cCCCCceeEEeeeEEEecCCCCCCCCC----------Ccccccccceee-eeEeecEEEEecCC---------ceeEEEE
Q 017674 247 YQRVPRCVYVSTELHEYKGCGGKPANP----------KHRCFSWGSRHL-EKYVSDFYISDFQS---------GLRALVK 306 (368)
Q Consensus 247 ~qkv~rCVYtst~LyE~rgw~~k~an~----------kh~~f~W~lr~~-E~~~~DFYIsDfqS---------G~RAlVK 306 (368)
|.+..+|.|.-+.+.++.+|....-.. -||-|.|-.... ++.+...|++|+.+ +. .+|.
T Consensus 15 i~~~~~C~~CgM~i~~~p~~~aqI~~~~~g~~~~F~s~~cm~~~~~~~e~~~~i~aiyV~D~~t~~~~w~~p~~~-~wId 93 (175)
T 2hpu_A 15 MTPETLGHYCQMNLLEHPGPKAQIFLEGSPAPLFFSQVRDAIAYARGPEQIAPILVIYVNDMGAAGATWDQPGDG-NWIA 93 (175)
T ss_dssp --------------------CEEEEETTCSSEEEESCHHHHHHHHTTGGGGSCEEEEEEEESCTTSSCTTCSCCC-EEEC
T ss_pred CCCCceeCCCCcCcccCCCccEEEEECCCCcEEEECCHHHHHHHHhcccccCceeEEEEEcCcccccccccCCCC-ceEE
Confidence 667779999999999987775433222 234455655442 45778889999987 22 3332
Q ss_pred ecCCCeeeeeeeeceEEeecCCC-CC-----CCHHHHHHHhhcCCCCcCceeeeeee
Q 017674 307 AGYGAKVAPFVKPATVVNITKGN-RD-----LSPSFLRWLADRNLSSDDRIMRLKEG 357 (368)
Q Consensus 307 aG~GakVtp~V~es~vvd~~~~~-kd-----lS~~f~~WL~erNlSsd~r~mRlkEG 357 (368)
++-..||+.+.+. +++. .+ --.+-+.|.++++ +++++++|=
T Consensus 94 ----A~~A~YVvgS~~~--gpMG~~~l~pFa~k~dAe~Fa~~~G----G~Vl~f~ei 140 (175)
T 2hpu_A 94 ----ADKAFYVVGSARR--GGMGAPEAVPFSSRDEAAAFVLAEG----GQVLALADI 140 (175)
T ss_dssp ----GGGSEEEEESSSS--CSSSCCCEEEESCHHHHHHHHHHTE----EEEEEGGGC
T ss_pred ----CCeeEEEeCCCCC--CCCCCCcccCcCCHHHHHHHHHHcC----CEEEEHHHc
Confidence 2334455443321 1111 00 1245677888875 678887753
No 9
>3zqp_A Terminase small subunit; DNA-binding protein, DNA packaging; 3.00A {Bacillus phage SF6} PDB: 3zqq_A
Probab=24.84 E-value=15 Score=32.51 Aligned_cols=27 Identities=19% Similarity=0.281 Sum_probs=0.0
Q ss_pred eeeeEeecEEEEecCCceeEEEEecCC
Q 017674 284 HLEKYVSDFYISDFQSGLRALVKAGYG 310 (368)
Q Consensus 284 ~~E~~~~DFYIsDfqSG~RAlVKaG~G 310 (368)
-..+..++.||.|+-+.-.|++||||-
T Consensus 27 ~KQ~~F~~eYi~~~~Nat~Aa~kAGYs 53 (164)
T 3zqp_A 27 PKQERFIEEYFINDMNATKAAIAAGYS 53 (164)
T ss_dssp ---------------------------
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHcCCC
Confidence 334778899999986788999999996
No 10
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=24.57 E-value=69 Score=25.06 Aligned_cols=24 Identities=17% Similarity=0.371 Sum_probs=14.5
Q ss_pred HHhhhhhhhc---hhhhhhhhccCCCc
Q 017674 196 IGMIWNCVWG---RRGLLGFVKKYPDT 219 (368)
Q Consensus 196 a~~iWN~~~~---~~~i~rfl~r~Pdt 219 (368)
.+++|-++-. ||+-.+|-+....+
T Consensus 28 llliwk~~~~i~DrrE~~kFEkE~~~~ 54 (79)
T 2knc_B 28 ALLIWKLLITIHDRKEFAKFEEERARA 54 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3566643333 88888887655444
No 11
>2vv5_A MSCS, small-conductance mechanosensitive channel; ION transport, transmembrane, inner membrane, membrane struc membrane protein, membrane; 3.45A {Escherichia coli} SCOP: b.38.1.3 d.58.43.1 f.34.1.1 PDB: 2oau_A
Probab=23.29 E-value=1.7e+02 Score=26.79 Aligned_cols=26 Identities=15% Similarity=0.113 Sum_probs=16.4
Q ss_pred CCCHHHHHHHhhcCCCCc--Cceeeeee
Q 017674 331 DLSPSFLRWLADRNLSSD--DRIMRLKE 356 (368)
Q Consensus 331 dlS~~f~~WL~erNlSsd--~r~mRlkE 356 (368)
++-.++.+.++++|++-- .+.+++++
T Consensus 252 ~l~~~i~~~~~~~gI~ip~P~~~v~~~~ 279 (286)
T 2vv5_A 252 DVLERIKREFDAAGISFPYPQMDVNFKR 279 (286)
T ss_dssp HHHHHHHHHHHHHTCCCCCCEEEEEEEC
T ss_pred HHHHHHHHHHHHCCCcCCCCceEEEecc
Confidence 455667777888887754 24455544
No 12
>1zrj_A E1B-55KDA-associated protein 5 isoform C; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=22.61 E-value=18 Score=26.35 Aligned_cols=16 Identities=19% Similarity=0.202 Sum_probs=15.0
Q ss_pred HHHHHHHhhcCCCCcC
Q 017674 334 PSFLRWLADRNLSSDD 349 (368)
Q Consensus 334 ~~f~~WL~erNlSsd~ 349 (368)
.+|+.+|.+|||+..+
T Consensus 16 ~eLK~eLk~RgL~~~G 31 (50)
T 1zrj_A 16 NELREELQRRGLDTRG 31 (50)
T ss_dssp HHHHHHHHHTTCCCCS
T ss_pred HHHHHHHHHcCCCCCC
Confidence 6899999999999987
No 13
>3j1r_A Archaeal adhesion filament core; helical polymer, flagellar filament, cell adhesion, structur protein; 7.50A {Ignicoccus hospitalis}
Probab=22.20 E-value=82 Score=20.65 Aligned_cols=19 Identities=5% Similarity=0.170 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 017674 182 VVLVAVAAVVGPLFIGMIW 200 (368)
Q Consensus 182 ~ll~~~~~lf~~v~a~~iW 200 (368)
++-.+.+.+++.++|.++|
T Consensus 4 iVA~~lLIviav~aaVlly 22 (26)
T 3j1r_A 4 VIATLLLILIAVAAAVLLY 22 (26)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444455555555655
No 14
>3fiq_A OBP1, RCG36470, odorant-binding protein 1F; lipocalin, oderant-binding protein, transport protein; 1.60A {Rattus norvegicus} SCOP: b.60.1.0
Probab=21.76 E-value=1.6e+02 Score=24.14 Aligned_cols=95 Identities=12% Similarity=0.093 Sum_probs=52.9
Q ss_pred EeccccccCccCCCCceeEEeeeEEEecCCCCCCCCCCcccccccceeeeeEeecEEEEecCCceeEEE---Ee-cCCCe
Q 017674 237 TCGSIPLESSYQRVPRCVYVSTELHEYKGCGGKPANPKHRCFSWGSRHLEKYVSDFYISDFQSGLRALV---KA-GYGAK 312 (368)
Q Consensus 237 tCG~~PLess~qkv~rCVYtst~LyE~rgw~~k~an~kh~~f~W~lr~~E~~~~DFYIsDfqSG~RAlV---Ka-G~Gak 312 (368)
.||+.-+..-+.+-..|++.+..+.+- - |. .|+-. + .-..+|||-|-+- ..+++ +. ..| +
T Consensus 47 ~~~~l~v~~~~~~~g~C~~~~~~~~kt-~-------pG--~f~~~--~--~G~~~~~V~~tdy-~~~i~~~~~~~~~g-~ 110 (157)
T 3fiq_A 47 ECQELKIIFNVKLDSECQTHTVVGQKH-E-------DG--RYTTD--Y--SGRNYFHVLKKTD-DIIFFHNVNVDESG-K 110 (157)
T ss_dssp GGCEEEEEEEEEETTEEEEEEEEEEEC-T-------TS--CEEEE--S--SSEEEEEEEEECS-SEEEEEEEEECTTS-C
T ss_pred CCCeEEEEEEEeeCCeeEEEEEEEEec-C-------CC--EEEEe--e--cCeEEEEEEEecC-CEEEEEEEEEcCCC-c
Confidence 456666666677777899999777764 2 11 23210 0 1123788877656 34443 32 223 2
Q ss_pred eeeeeeeceEEeecCCCCCCCH----HHHHHHhhcCCCCcCceeee
Q 017674 313 VAPFVKPATVVNITKGNRDLSP----SFLRWLADRNLSSDDRIMRL 354 (368)
Q Consensus 313 Vtp~V~es~vvd~~~~~kdlS~----~f~~WL~erNlSsd~r~mRl 354 (368)
.. ..- .++ ++. .++|+ +|+++..++||+.|. |+-+
T Consensus 111 ~~--~~~-~Ly--gR~-~~~s~e~~e~F~~~~~~~Gl~~en-I~~~ 149 (157)
T 3fiq_A 111 ET--NVI-LVA--GKR-EDLNKAQKQELRKLAEEYNIPNEN-TQHL 149 (157)
T ss_dssp EE--EEE-EEE--ESS-SCCCHHHHHHHHHHHHHTTCCGGG-CEEC
T ss_pred EE--EEE-EEE--cCC-CCCCHHHHHHHHHHHHHcCCCHHH-EEeC
Confidence 11 111 111 333 55665 577999999999887 5444
No 15
>2vl6_A SSO MCM N-TER, minichromosome maintenance protein MCM; helicase, hydrolase, zinc-finger, ATP-binding, DNA-BIND ssDNA binding; 2.8A {Sulfolobus solfataricus}
Probab=21.23 E-value=1.2e+02 Score=27.38 Aligned_cols=34 Identities=29% Similarity=0.329 Sum_probs=24.1
Q ss_pred ccCCCCcEEEEEEEEEeccccccCccCCCCceeEEee
Q 017674 222 RGAIDGQYVKVTGVVTCGSIPLESSYQRVPRCVYVST 258 (368)
Q Consensus 222 r~a~dGq~VKItG~VtCG~~PLess~qkv~rCVYtst 258 (368)
+.++.|+.|.|||.+.+-... ++++..+|+|...
T Consensus 223 d~~~PGDrV~vtGI~~~~~~~---~~~~~~~~~~~~y 256 (268)
T 2vl6_A 223 DSARPGDRVKVTGILDIKQDS---PVKRGSRAVFDIY 256 (268)
T ss_dssp TSSCTTCEEEEEEEEEEECSS---TTCCSSCCEEEEE
T ss_pred CcccCCCEEEEEEEEEEeecc---cccCCCceEEEEE
Confidence 468999999999999875443 2355556776543
No 16
>3rlf_F Maltose transport system permease protein MALF; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 2r6g_F* 3puv_F* 3pux_F* 3puy_F* 3puz_F* 3pv0_F* 3puw_F* 3fh6_F
Probab=20.84 E-value=1.1e+02 Score=30.88 Aligned_cols=41 Identities=17% Similarity=0.182 Sum_probs=31.9
Q ss_pred hhhHHHHHHHHHHHHHhhheehheehhHHHHHHHHHHHHHH
Q 017674 154 RAVAWVVMVVVAMGVMVGAFLMVAVKKAVVLVAVAAVVGPL 194 (368)
Q Consensus 154 k~vlw~vi~l~~~g~~aG~f~l~av~~~~ll~~~~~lf~~v 194 (368)
+.+-|+++.++.+-.+-+++.|.+..+|.+.++.+++.+++
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 53 (514)
T 3rlf_F 13 DALKWSVLGLLGLLVGYLVVLMYAQGEYLFAITTLILSSAG 53 (514)
T ss_dssp SHHHHHHHHHHHHHHHHTHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHHHHHH
Confidence 45678888888888888999999999998877666555443
No 17
>4aw6_A CAAX prenyl protease 1 homolog; hydrolase, M48 peptidase, integral membrane protein, prelami processing, ageing, progeria; HET: PC1; 3.40A {Homo sapiens} PDB: 2ypt_A
Probab=20.65 E-value=63 Score=32.61 Aligned_cols=16 Identities=19% Similarity=0.357 Sum_probs=11.4
Q ss_pred hhhhhhccCCCccccc
Q 017674 208 GLLGFVKKYPDTELRG 223 (368)
Q Consensus 208 ~i~rfl~r~Pdt~lr~ 223 (368)
-+.+.+...||-+|++
T Consensus 221 PLfnk~~Pl~dg~L~~ 236 (482)
T 4aw6_A 221 PLFDKFTPLPEGKLKE 236 (482)
T ss_dssp HHHSCEEECCSSHHHH
T ss_pred HHcCCCccCCcHHHHH
Confidence 3566677788888775
Done!