Query 017674
Match_columns 368
No_of_seqs 56 out of 58
Neff 3.2
Searched_HMMs 13730
Date Mon Mar 25 03:08:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017674.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/017674hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1gy6a_ d.17.4.2 (A:) Nuclear 39.2 5 0.00036 31.0 1.4 45 198-242 37-93 (125)
2 d1wnaa1 d.319.1.1 (A:1-127) Hy 30.6 21 0.0016 28.8 3.9 63 291-364 31-99 (127)
3 d2r6gf1 e.70.1.1 (F:13-260) Ma 23.8 37 0.0027 29.4 4.6 32 158-189 5-36 (248)
4 d1jkga_ d.17.4.2 (A:) NTF2-rel 23.0 11 0.00081 29.4 0.8 46 197-242 43-104 (139)
5 d2pi2a1 b.40.4.3 (A:44-171) Re 22.9 27 0.002 26.6 3.1 18 220-237 73-90 (128)
6 d1zo2a1 d.17.4.2 (A:10-126) Nu 21.6 12 0.0009 28.0 0.8 45 198-242 33-89 (117)
7 d1gy7a_ d.17.4.2 (A:) Nuclear 19.1 14 0.001 27.9 0.7 45 197-241 33-90 (121)
8 d3ehbb2 f.17.2.1 (B:1-107) Bac 17.5 46 0.0034 24.9 3.3 20 183-202 38-57 (107)
9 d1ogya1 b.52.2.2 (A:682-801) P 17.4 23 0.0017 26.5 1.5 34 220-256 47-85 (120)
10 d2pila_ d.24.1.1 (A:) Pilin Gc 16.4 44 0.0032 23.9 2.9 17 185-201 7-23 (158)
No 1
>d1gy6a_ d.17.4.2 (A:) Nuclear transport factor-2 (NTF2) {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=39.24 E-value=5 Score=30.95 Aligned_cols=45 Identities=13% Similarity=0.258 Sum_probs=32.8
Q ss_pred hhh--hhhhchhhhhhhhccCCCcc----cc------cCCCCcEEEEEEEEEecccc
Q 017674 198 MIW--NCVWGRRGLLGFVKKYPDTE----LR------GAIDGQYVKVTGVVTCGSIP 242 (368)
Q Consensus 198 ~iW--N~~~~~~~i~rfl~r~Pdt~----lr------~a~dGq~VKItG~VtCG~~P 242 (368)
++| |.+.++.+|..++.++|-.+ +. +...+=+|.|+|.|++++.|
T Consensus 37 l~~~g~~~~G~~~I~~~l~~lp~~~~~~~i~~~D~Q~~~~~~ili~V~G~~~~~~~~ 93 (125)
T d1gy6a_ 37 LTWEGQQFQGKAAIVEKLSSLPFQKIQHSITAQDHQPTPDSCIISMVVGQLKADEDP 93 (125)
T ss_dssp EEETTEEEESHHHHHHHHHHCSCSCEEEEEEEEEEEECTTSCEEEEEEEEEEETTSC
T ss_pred EEECCccccCHHHHHHHHHcCCCcccEEEEeEEEEEEcCCCCEEEEEEEEEEECCCC
Confidence 456 55667889999999999553 22 24557789999999887654
No 2
>d1wnaa1 d.319.1.1 (A:1-127) Hypothetical protein TTHA1528 (TT1805) {Thermus thermophilus [TaxId: 274]}
Probab=30.55 E-value=21 Score=28.75 Aligned_cols=63 Identities=16% Similarity=0.267 Sum_probs=38.5
Q ss_pred cEEEEecCC-----ceeEEEEecCCCeeeeeeeeceEEeec-CCCCCCCHHHHHHHhhcCCCCcCceeeeeeeccccCCc
Q 017674 291 DFYISDFQS-----GLRALVKAGYGAKVAPFVKPATVVNIT-KGNRDLSPSFLRWLADRNLSSDDRIMRLKEGFAPLFSV 364 (368)
Q Consensus 291 DFYIsDfqS-----G~RAlVKaG~GakVtp~V~es~vvd~~-~~~kdlS~~f~~WL~erNlSsd~r~mRlkEGyIkeGe~ 364 (368)
-.||+|.|. +.-++|..|.. +.+..|-- --- ++-..+=.||.+||.++|.- +.+|-.|-.||.
T Consensus 31 ~~lITDwQdqR~qArya~lv~~Gk~----~ll~~dAF-GPafp~G~~ALaELv~wl~~~G~r------~~~EaVv~p~e~ 99 (127)
T d1wnaa1 31 VYLITDWQDKRDQARYALLLHTGKK----DLLVPDAF-GPAFPGGEEALSELVGLLLAQGAR------RFYEAVVSPGEM 99 (127)
T ss_dssp EEEEEECCSSTTSCCEEEEEECSSC----EEEEEEEE-STTSTTHHHHHHHHHHHHHHTTCC------EEEEEEECGGGH
T ss_pred EEEEecccchhhhhhhHHHhhcCCc----cccccccc-CCCCccHHHHHHHHHHHHHHcCCc------hhhhhhcCHHHH
Confidence 369999875 45567766663 34444431 100 11123446899999999863 677877777663
No 3
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=23.85 E-value=37 Score=29.38 Aligned_cols=32 Identities=19% Similarity=0.227 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHhhheehheehhHHHHHHHHH
Q 017674 158 WVVMVVVAMGVMVGAFLMVAVKKAVVLVAVAA 189 (368)
Q Consensus 158 w~vi~l~~~g~~aG~f~l~av~~~~ll~~~~~ 189 (368)
|+++.++..=.+-++++|.+..+|.+++++++
T Consensus 5 ~~ll~l~~a~~~~~~~~~~~~~~~~~a~~~~~ 36 (248)
T d2r6gf1 5 WSVLGLLGLLVGYLVVLMYAQGEYLFAITTLI 36 (248)
T ss_dssp HHHHHHHHHHHHHTHHHHHGGGCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcchHHHHHHHHH
Confidence 66666665555666777777777776554443
No 4
>d1jkga_ d.17.4.2 (A:) NTF2-related export protein 1 (p15) {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.02 E-value=11 Score=29.41 Aligned_cols=46 Identities=24% Similarity=0.420 Sum_probs=33.0
Q ss_pred Hhhh--hhhhchhhhhhhhccCCCcccc--c-----CC-------CCcEEEEEEEEEecccc
Q 017674 197 GMIW--NCVWGRRGLLGFVKKYPDTELR--G-----AI-------DGQYVKVTGVVTCGSIP 242 (368)
Q Consensus 197 ~~iW--N~~~~~~~i~rfl~r~Pdt~lr--~-----a~-------dGq~VKItG~VtCG~~P 242 (368)
.|+| |.+.++.+|..++..+|.++.. + .. .|=+|.|+|.|+..+.|
T Consensus 43 ~l~~~g~~~~G~~~I~~~l~~lp~~~~~i~~~D~q~~~~~~~~~~~~ilI~V~G~v~~~~~~ 104 (139)
T d1jkga_ 43 TLVWNGNAVSGQESLSEFFEMLPSSEFQISVVDCQPVHDEATPSQTTVLVVICGSVKFEGNK 104 (139)
T ss_dssp EEEETTEEEESHHHHHHHHHHSCCEEEEEEEEEEEECCTTTSTTCCEEEEEEEEEEEETTSC
T ss_pred eEEECCeeccCHHHHHHHHHhCCCceeEEEEEEEEEcCcccccCCCeEEEEEEEEEEcCCCC
Confidence 3567 6677789999999999987542 1 11 13489999999987654
No 5
>d2pi2a1 b.40.4.3 (A:44-171) Replication protein A 32 KDa subunit (RPA32) fragment {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.85 E-value=27 Score=26.61 Aligned_cols=18 Identities=33% Similarity=0.329 Sum_probs=14.6
Q ss_pred ccccCCCCcEEEEEEEEE
Q 017674 220 ELRGAIDGQYVKVTGVVT 237 (368)
Q Consensus 220 ~lr~a~dGq~VKItG~Vt 237 (368)
+-..+++|.||||.|.+.
T Consensus 73 ~~~~i~~g~yVrV~G~lk 90 (128)
T d2pi2a1 73 ENTVVPPETYVKVAGHLR 90 (128)
T ss_dssp -CCCCCTTCEEEEEEEEE
T ss_pred ccccccCCCEEEEEEEEE
Confidence 345789999999999976
No 6
>d1zo2a1 d.17.4.2 (A:10-126) Nuclear transport factor-2 (NTF2) {Cryptosporidium parvum [TaxId: 5807]}
Probab=21.58 E-value=12 Score=27.99 Aligned_cols=45 Identities=18% Similarity=0.254 Sum_probs=31.4
Q ss_pred hhh--hhhhchhhhhhhhccCCCcc----cc------cCCCCcEEEEEEEEEecccc
Q 017674 198 MIW--NCVWGRRGLLGFVKKYPDTE----LR------GAIDGQYVKVTGVVTCGSIP 242 (368)
Q Consensus 198 ~iW--N~~~~~~~i~rfl~r~Pdt~----lr------~a~dGq~VKItG~VtCG~~P 242 (368)
++| +.+.++.+|..++.+.|-.. +. +.-+|=+|-|+|.+++.+.|
T Consensus 33 l~~~g~~~~G~~~I~~~l~~l~~~~~~~~i~~~D~Qp~~~~~ili~V~G~~~~~~~~ 89 (117)
T d1zo2a1 33 LTWEDTQFQGQANIVNKFNSLNFQRVQFEITRVDCQPSPNNGSIVFVTGDVRIDDGQ 89 (117)
T ss_dssp EEETTEEEESHHHHHHHHHHHCCSCEEEEEEEEEEEECTBSSEEEEEEEEEEETTCC
T ss_pred EEECCCcccCHHHHHHHHHhCCCccceEEEeeEEEEEcCCCCEEEEEEEEEEeCCCC
Confidence 446 45566888999999888432 22 24456789999999987654
No 7
>d1gy7a_ d.17.4.2 (A:) Nuclear transport factor-2 (NTF2) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=19.11 E-value=14 Score=27.88 Aligned_cols=45 Identities=13% Similarity=0.176 Sum_probs=31.4
Q ss_pred Hhhh--hhhhchhhhhhhhccCCCc----cccc------CCCC-cEEEEEEEEEeccc
Q 017674 197 GMIW--NCVWGRRGLLGFVKKYPDT----ELRG------AIDG-QYVKVTGVVTCGSI 241 (368)
Q Consensus 197 ~~iW--N~~~~~~~i~rfl~r~Pdt----~lr~------a~dG-q~VKItG~VtCG~~ 241 (368)
.++| |.+.++..|..+|.++|-. ++.+ ..+| =+|-|+|.+++++.
T Consensus 33 ~l~~~g~~~~G~~~I~~~l~~lp~~~~~~~i~~~D~Qp~~~~~~ili~V~G~~~~~~~ 90 (121)
T d1gy7a_ 33 MLTFETSQLQGAKDIVEKLVSLPFQKVQHRITTLDAQPASPYGDVLVMITGDLLIDEE 90 (121)
T ss_dssp EEEETTEEEESHHHHHHHHHHSCCSCEEEEEEEEEEEESSTTSCEEEEEEEEEEETTC
T ss_pred EEEECCeEecCHHHHHHHHHhCCCcccEEEEeeEeeEEccCCCeEEEEEEEEEEECCC
Confidence 3567 4667789999999999943 2221 2233 57899999999764
No 8
>d3ehbb2 f.17.2.1 (B:1-107) Bacterial aa3 type cytochrome c oxidase subunit II {Paracoccus denitrificans [TaxId: 266]}
Probab=17.47 E-value=46 Score=24.85 Aligned_cols=20 Identities=20% Similarity=0.119 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHhhhhh
Q 017674 183 VLVAVAAVVGPLFIGMIWNC 202 (368)
Q Consensus 183 ll~~~~~lf~~v~a~~iWN~ 202 (368)
++++++++|.+|.++++|.+
T Consensus 38 v~~i~~~I~~~V~~~~~~~~ 57 (107)
T d3ehbb2 38 VLYIITAVTIFVCLLLLICI 57 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 35555666667777787733
No 9
>d1ogya1 b.52.2.2 (A:682-801) Periplasmic nitrate reductase alpha chain, NapA {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=17.39 E-value=23 Score=26.53 Aligned_cols=34 Identities=29% Similarity=0.386 Sum_probs=20.9
Q ss_pred ccccCCCCcEEEEE---EEEEeccccccCccCCC--CceeEE
Q 017674 220 ELRGAIDGQYVKVT---GVVTCGSIPLESSYQRV--PRCVYV 256 (368)
Q Consensus 220 ~lr~a~dGq~VKIt---G~VtCG~~PLess~qkv--~rCVYt 256 (368)
.-..++|||.|+|+ |.|++ .+.+.+..+ +-|||.
T Consensus 47 ~~~Gi~dGd~V~v~s~~G~i~~---~~~v~~~~~v~~G~v~~ 85 (120)
T d1ogya1 47 RSRGLNRGSEVRVISRRGEIRT---RLETRGRNRMPRGVVFV 85 (120)
T ss_dssp HHTTCCTTCEEEEECSSCEEEE---EEESSSSSBCCTTEEEE
T ss_pred HHhCCCCCCEEEEECCCCcEEE---EEEeeccCCCCCCEEEE
Confidence 33469999999999 65442 233433322 347776
No 10
>d2pila_ d.24.1.1 (A:) Pilin Gc {Neisseria gonorrhoeae [TaxId: 485]}
Probab=16.38 E-value=44 Score=23.88 Aligned_cols=17 Identities=29% Similarity=0.212 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHhhhh
Q 017674 185 VAVAAVVGPLFIGMIWN 201 (368)
Q Consensus 185 ~~~~~lf~~v~a~~iWN 201 (368)
+||+++++.++++.+-+
T Consensus 7 lVViaIIgILaaia~P~ 23 (158)
T d2pila_ 7 MIVIAIVGILAAVALPA 23 (158)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444443
Done!