BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017677
(368 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WJ2|A Chain A, Solution Structure Of The C-Terminal Wrky Domain Of
Atwrky4
pdb|2LEX|A Chain A, Complex Of The C-Terminal Wrky Domain Of Atwrky4 And A
W-Box Dna
Length = 78
Score = 132 bits (332), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 59/71 (83%), Positives = 66/71 (92%)
Query: 262 VQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTTTGCPVRKHVERASHDMRAVITT 321
VQTTS++D+LDDGYRWRKYGQKVVKGNP PRSYYKCTT GC VRKHVERA+ D +AV+TT
Sbjct: 8 VQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTT 67
Query: 322 YEGKHNHDVPA 332
YEGKHNHD+PA
Sbjct: 68 YEGKHNHDLPA 78
Score = 71.6 bits (174), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 35/67 (52%), Positives = 43/67 (64%), Gaps = 1/67 (1%)
Query: 96 TREQKRSEDGYNWRKYGQKQVKGSENPRSYFKCTFPDCPMKKKVERSL-DGQITEIVYKG 154
T E +DGY WRKYGQK VKG+ PRSY+KCT P C ++K VER+ D + Y+G
Sbjct: 11 TSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEG 70
Query: 155 SHNHPKP 161
HNH P
Sbjct: 71 KHNHDLP 77
>pdb|2AYD|A Chain A, Crystal Structure Of The C-Terminal Wrky Domainof Atwrky1,
An Sa-Induced And Partially Npr1-Dependent Transcription
Factor
Length = 76
Score = 119 bits (297), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 51/73 (69%), Positives = 64/73 (87%)
Query: 259 RIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTTTGCPVRKHVERASHDMRAV 318
RIVV T + DI++DGYRWRKYGQK VKG+P PRSYY+C++ GCPV+KHVER+SHD + +
Sbjct: 2 RIVVHTQTLFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLL 61
Query: 319 ITTYEGKHNHDVP 331
ITTYEGKH+HD+P
Sbjct: 62 ITTYEGKHDHDMP 74
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 34/59 (57%), Positives = 42/59 (71%), Gaps = 1/59 (1%)
Query: 104 DGYNWRKYGQKQVKGSENPRSYFKCTFPDCPMKKKVERSL-DGQITEIVYKGSHNHPKP 161
DGY WRKYGQK VKGS PRSY++C+ P CP+KK VERS D ++ Y+G H+H P
Sbjct: 16 DGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLLITTYEGKHDHDMP 74
>pdb|3UJM|A Chain A, Crystal Structure Of The Ntf2-Like Domain Of The
Drosophila Melanogaster Rasputin Protein
pdb|3UJM|B Chain B, Crystal Structure Of The Ntf2-Like Domain Of The
Drosophila Melanogaster Rasputin Protein
Length = 120
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 41/101 (40%), Gaps = 13/101 (12%)
Query: 195 HTDSFSMQNESSTSFGEDDFVEQGSPTSNPIGDDDENEPDAKRWKGENDIEGVIGTGSRT 254
H F N SS GE V N I + N+ AK + D + +G G
Sbjct: 24 HLHRFYNHN-SSYIHGESKLVVGQREIHNRIQQLNFNDCHAK--ISQVDAQATLGNG--- 77
Query: 255 VREPRIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYY 295
+VVQ T ++ +DG R++ Q V +P+ YY
Sbjct: 78 -----VVVQVTGELS--NDGQPMRRFTQTFVLAAQSPKKYY 111
>pdb|2VB2|X Chain X, Crystal Structure Of Cu(I)cusf
pdb|2VB3|X Chain X, Crystal Structure Of Ag(I)cusf
Length = 88
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 337 HHQEVKRHIQPQCCRAQGVMESQDLQSQQV 366
HH E QPQ A GV++ DL+S+++
Sbjct: 3 HHHETMSEAQPQVISATGVVKGIDLESKKI 32
>pdb|3L9O|A Chain A, Crystal Structure Of Mtr4, A Co-Factor Of The Nuclear
Exosome
Length = 1108
Score = 28.5 bits (62), Expect = 5.6, Method: Composition-based stats.
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 195 HTDSFSMQNESSTSFGEDDFVEQGSPTSNPIGDDDENEPDAKRWKGE 241
H D + + ++F E++F + + SN IG DD N D++ KG+
Sbjct: 369 HGDGIYLVVDEKSTFREENFQKAMASISNQIG-DDPNSTDSRGKKGQ 414
>pdb|1WQA|A Chain A, Crystal Structure Of Pyrococcus Horikoshii
PhosphomannomutasePHOSPHOGLUCOMUTASE COMPLEXED WITH MG2+
pdb|1WQA|B Chain B, Crystal Structure Of Pyrococcus Horikoshii
PhosphomannomutasePHOSPHOGLUCOMUTASE COMPLEXED WITH MG2+
pdb|1WQA|C Chain C, Crystal Structure Of Pyrococcus Horikoshii
PhosphomannomutasePHOSPHOGLUCOMUTASE COMPLEXED WITH MG2+
pdb|1WQA|D Chain D, Crystal Structure Of Pyrococcus Horikoshii
PhosphomannomutasePHOSPHOGLUCOMUTASE COMPLEXED WITH MG2+
Length = 455
Score = 28.1 bits (61), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 256 REPRIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYY 295
R+P +VV T++ L Y R+ G KV+ N P Y+
Sbjct: 173 RKPFVVVDTSNGAGSLTLPYLLRELGCKVITVNAQPDGYF 212
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.311 0.128 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,473,039
Number of Sequences: 62578
Number of extensions: 478549
Number of successful extensions: 663
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 651
Number of HSP's gapped (non-prelim): 19
length of query: 368
length of database: 14,973,337
effective HSP length: 100
effective length of query: 268
effective length of database: 8,715,537
effective search space: 2335763916
effective search space used: 2335763916
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 52 (24.6 bits)