Query 017677
Match_columns 368
No_of_seqs 287 out of 1221
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 03:11:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017677.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017677hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ayd_A WRKY transcription fact 100.0 3.1E-37 1.1E-41 245.4 4.8 76 258-333 1-76 (76)
2 1wj2_A Probable WRKY transcrip 100.0 6.5E-37 2.2E-41 244.7 3.2 75 258-332 4-78 (78)
3 2ayd_A WRKY transcription fact 100.0 1.7E-30 5.8E-35 206.8 3.5 66 97-162 9-75 (76)
4 1wj2_A Probable WRKY transcrip 100.0 2E-30 6.7E-35 207.3 3.0 65 98-162 13-78 (78)
5 2rpr_A Flywch-type zinc finger 83.6 0.43 1.5E-05 37.4 1.7 55 266-333 19-76 (87)
6 2rpr_A Flywch-type zinc finger 54.4 3.2 0.00011 32.3 0.5 48 101-160 23-73 (87)
7 1cz6_A Protein (androctonin); 15.7 35 0.0012 21.5 0.2 8 293-300 16-23 (26)
8 1odh_A MGCM1; transcription fa 15.2 88 0.003 28.1 2.7 40 294-336 122-162 (174)
9 1qxn_A SUD, sulfide dehydrogen 13.8 62 0.0021 26.3 1.3 24 267-290 109-133 (137)
10 1odh_A MGCM1; transcription fa 12.8 1E+02 0.0035 27.7 2.4 11 153-163 149-159 (174)
No 1
>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}
Probab=100.00 E-value=3.1e-37 Score=245.45 Aligned_cols=76 Identities=67% Similarity=1.280 Sum_probs=73.4
Q ss_pred cceEEeeccccccccccchhhhcCCcccCCCCCCCccccccCCCCCcccchhhhcCCCCEEEEEEeccCCCCCCcc
Q 017677 258 PRIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTTTGCPVRKHVERASHDMRAVITTYEGKHNHDVPAA 333 (368)
Q Consensus 258 ~rvvv~t~s~~d~~dDGY~WRKYGQK~ikgn~~pRsYYrCt~~gC~a~K~Ver~~~D~~~~~~TY~G~HnH~~p~~ 333 (368)
.||+|+|.+++++++|||+|||||||.|||+++||+||||+.+||+|+|+|||+.+|+.+|+|||+|+|||+.|.+
T Consensus 1 ~r~~v~t~~~~~~~~DGy~WRKYGQK~ikgs~~PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~~ 76 (76)
T 2ayd_A 1 SRIVVHTQTLFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLLITTYEGKHDHDMPPG 76 (76)
T ss_dssp CEEEEEEECSSSCCCCSSCEEEEEEECCTTCSSCEEEEEECSTTCCCEEEEEECSSSTTEEEEEEESCCSSCCCCC
T ss_pred CeEEEEecCCCCcCCCCchhhhCcccccCCCCCceeEeEcCCCCCCceeeEEEECCCCCEEEEEEccCcCCCCCCC
Confidence 3799999999999999999999999999999999999999999999999999999999999999999999999863
No 2
>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A*
Probab=100.00 E-value=6.5e-37 Score=244.65 Aligned_cols=75 Identities=79% Similarity=1.297 Sum_probs=69.8
Q ss_pred cceEEeeccccccccccchhhhcCCcccCCCCCCCccccccCCCCCcccchhhhcCCCCEEEEEEeccCCCCCCc
Q 017677 258 PRIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTTTGCPVRKHVERASHDMRAVITTYEGKHNHDVPA 332 (368)
Q Consensus 258 ~rvvv~t~s~~d~~dDGY~WRKYGQK~ikgn~~pRsYYrCt~~gC~a~K~Ver~~~D~~~~~~TY~G~HnH~~p~ 332 (368)
.+|+|+|.+++++++|||+|||||||.|||+++||+||||+.+||+|+|+|||+++|+.+|+|||+|+|||+.|+
T Consensus 4 ~~~~~~t~s~~~~~dDGy~WRKYGQK~ikgs~~PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~ 78 (78)
T 1wj2_A 4 GSSGVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLPA 78 (78)
T ss_dssp ----CCCCCCCCCCCSSSCBCCCEEECCTTCSSCEEEEEEECSSCEEEEEEEEETTTTSEEEEEEESCCSSCCCC
T ss_pred ceEEEeccCCCCcCCCCchhhhCcccccCCCcCeeEEeecCcCCCCcEeeEEEEcCCCCEEEEEEeeEcCCCCCC
Confidence 378999999999999999999999999999999999999999999999999999999999999999999999984
No 3
>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}
Probab=99.96 E-value=1.7e-30 Score=206.76 Aligned_cols=66 Identities=52% Similarity=0.980 Sum_probs=61.0
Q ss_pred eccccCCCCccccccCcccCCCCCCCCCCCCCCCCCCccccchhccc-CCceeeeeecccCCCCCCC
Q 017677 97 REQKRSEDGYNWRKYGQKQVKGSENPRSYFKCTFPDCPMKKKVERSL-DGQITEIVYKGSHNHPKPT 162 (368)
Q Consensus 97 ~~~~~~~DGy~WRKYGQK~ikgs~~pRsYYrCt~~~C~akK~Ver~~-dg~~~~i~Y~G~Hnh~~p~ 162 (368)
.+...++|||+|||||||.|||+++||+|||||+++|+|+|+|||+. |+.++.|+|+|+|||+.|.
T Consensus 9 ~~~~~~~DGy~WRKYGQK~ikgs~~PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~ 75 (76)
T 2ayd_A 9 TLFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLLITTYEGKHDHDMPP 75 (76)
T ss_dssp CSSSCCCCSSCEEEEEEECCTTCSSCEEEEEECSTTCCCEEEEEECSSSTTEEEEEEESCCSSCCCC
T ss_pred CCCCcCCCCchhhhCcccccCCCCCceeEeEcCCCCCCceeeEEEECCCCCEEEEEEccCcCCCCCC
Confidence 34567899999999999999999999999999999999999999986 6788999999999999875
No 4
>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A*
Probab=99.96 E-value=2e-30 Score=207.26 Aligned_cols=65 Identities=52% Similarity=0.981 Sum_probs=60.1
Q ss_pred ccccCCCCccccccCcccCCCCCCCCCCCCCCCCCCccccchhccc-CCceeeeeecccCCCCCCC
Q 017677 98 EQKRSEDGYNWRKYGQKQVKGSENPRSYFKCTFPDCPMKKKVERSL-DGQITEIVYKGSHNHPKPT 162 (368)
Q Consensus 98 ~~~~~~DGy~WRKYGQK~ikgs~~pRsYYrCt~~~C~akK~Ver~~-dg~~~~i~Y~G~Hnh~~p~ 162 (368)
+...++|||+|||||||.|||+++||+|||||+++|+|+|+|||+. |+.++.|+|+|+|||+.|.
T Consensus 13 ~~~~~dDGy~WRKYGQK~ikgs~~PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~ 78 (78)
T 1wj2_A 13 EVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLPA 78 (78)
T ss_dssp CCCCCCSSSCBCCCEEECCTTCSSCEEEEEEECSSCEEEEEEEEETTTTSEEEEEEESCCSSCCCC
T ss_pred CCCcCCCCchhhhCcccccCCCcCeeEEeecCcCCCCcEeeEEEEcCCCCEEEEEEeeEcCCCCCC
Confidence 3566899999999999999999999999999999999999999975 6788999999999999873
No 5
>2rpr_A Flywch-type zinc finger-containing protein 1; flywch domain, alternative splicing, DNA-binding, metal- binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=83.64 E-value=0.43 Score=37.35 Aligned_cols=55 Identities=20% Similarity=0.413 Sum_probs=35.0
Q ss_pred cccccccccchhhhcCCcccCCCCCCCccccccC---CCCCcccchhhhcCCCCEEEEEEeccCCCCCCcc
Q 017677 266 SDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTT---TGCPVRKHVERASHDMRAVITTYEGKHNHDVPAA 333 (368)
Q Consensus 266 s~~d~~dDGY~WRKYGQK~ikgn~~pRsYYrCt~---~gC~a~K~Ver~~~D~~~~~~TY~G~HnH~~p~~ 333 (368)
...-|+-|||.-.+--+ ...+.|.+|+. .+|.|+=.... ++ + ...+.|||++...
T Consensus 19 G~~~Lv~~Gy~Y~~~~~------~~~~~yWrC~~~~~~kCrARi~T~~--~~---~--~~~~~HnH~p~~~ 76 (87)
T 2rpr_A 19 GGRFLVHESFLYRKEKA------AGEKVYWMCRDQARLGCRSRAITQG--HR---I--MVMRSHCHQPDLA 76 (87)
T ss_dssp TEEEEEETTEEEEEEEE------CSSCEEEEEGGGTTSCCCCEEEEET--TE---E--EECSCCSSCCCHH
T ss_pred CCcEEEECCEEEEeeec------CCCcEEEEecCCCCCCCCEEEEEcC--CC---E--ECCCCcCCCCchh
Confidence 33346679998876321 12368999995 58999854432 11 3 3568999976543
No 6
>2rpr_A Flywch-type zinc finger-containing protein 1; flywch domain, alternative splicing, DNA-binding, metal- binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=54.35 E-value=3.2 Score=32.27 Aligned_cols=48 Identities=19% Similarity=0.347 Sum_probs=29.8
Q ss_pred cCCCCccccccCcccCCCCCCCCCCCCCCC---CCCccccchhcccCCceeeeeecccCCCCC
Q 017677 101 RSEDGYNWRKYGQKQVKGSENPRSYFKCTF---PDCPMKKKVERSLDGQITEIVYKGSHNHPK 160 (368)
Q Consensus 101 ~~~DGy~WRKYGQK~ikgs~~pRsYYrCt~---~~C~akK~Ver~~dg~~~~i~Y~G~Hnh~~ 160 (368)
..-|||.-.+--. ...+.|.+|+. .+|.|+=.... ++ ++..+.|||++
T Consensus 23 Lv~~Gy~Y~~~~~------~~~~~yWrC~~~~~~kCrARi~T~~--~~----~~~~~~HnH~p 73 (87)
T 2rpr_A 23 LVHESFLYRKEKA------AGEKVYWMCRDQARLGCRSRAITQG--HR----IMVMRSHCHQP 73 (87)
T ss_dssp EEETTEEEEEEEE------CSSCEEEEEGGGTTSCCCCEEEEET--TE----EEECSCCSSCC
T ss_pred EEECCEEEEeeec------CCCcEEEEecCCCCCCCCEEEEEcC--CC----EECCCCcCCCC
Confidence 3578887664221 12367999986 47999743331 22 34578899975
No 7
>1cz6_A Protein (androctonin); peptide, beta sheet, toxin; NMR {Androctonus australis} SCOP: j.3.1.3
Probab=15.68 E-value=35 Score=21.53 Aligned_cols=8 Identities=63% Similarity=1.381 Sum_probs=6.4
Q ss_pred ccccccCC
Q 017677 293 SYYKCTTT 300 (368)
Q Consensus 293 sYYrCt~~ 300 (368)
.||+|++.
T Consensus 16 cyykctnr 23 (26)
T 1cz6_A 16 CYYKCTNR 23 (26)
T ss_dssp CEEEECCC
T ss_pred eEEEccCC
Confidence 59999864
No 8
>1odh_A MGCM1; transcription factor/DNA, transcription factor, DNA-binding domain, protein/DNA complex; 2.85A {Mus musculus} SCOP: d.239.1.1
Probab=15.18 E-value=88 Score=28.10 Aligned_cols=40 Identities=30% Similarity=0.586 Sum_probs=26.2
Q ss_pred ccccc-CCCCCcccchhhhcCCCCEEEEEEeccCCCCCCccccC
Q 017677 294 YYKCT-TTGCPVRKHVERASHDMRAVITTYEGKHNHDVPAARFH 336 (368)
Q Consensus 294 YYrCt-~~gC~a~K~Ver~~~D~~~~~~TY~G~HnH~~p~~r~~ 336 (368)
.+.|. .-|=||+ ++.| +|...+..--+|+|+|+.|.+..+
T Consensus 122 ~~~Crgh~GyPVT-hFWr--h~~~~ifFqaKG~HDHpRPe~k~~ 162 (174)
T 1odh_A 122 LIPCRGHGGFPVT-NFWR--HDGRFIFFQSKGEHDHPRPETKLE 162 (174)
T ss_dssp EECCCTBTTBCCE-EEEE--ECSSBEEEEEECCCCSCCCCCHHH
T ss_pred eEeccCcCCCcce-EEEE--EcCCEEEEecccccCCCCCCCccc
Confidence 45665 3466774 5555 344455567789999999987643
No 9
>1qxn_A SUD, sulfide dehydrogenase; polysulfide-sulfur transferase, homodimer; NMR {Wolinella succinogenes} SCOP: c.46.1.3
Probab=13.85 E-value=62 Score=26.33 Aligned_cols=24 Identities=17% Similarity=0.299 Sum_probs=19.9
Q ss_pred ccccccccch-hhhcCCcccCCCCC
Q 017677 267 DIDILDDGYR-WRKYGQKVVKGNPN 290 (368)
Q Consensus 267 ~~d~~dDGY~-WRKYGQK~ikgn~~ 290 (368)
++.+++.|+. |++.|-.+++++++
T Consensus 109 ~v~~l~GG~~~W~~~g~p~~~~~~~ 133 (137)
T 1qxn_A 109 TIYNSEGGMDKWLEEGLPSLDRSHH 133 (137)
T ss_dssp CEEEESSCHHHHHHTTCCEECCCCC
T ss_pred ceEEEcCcHHHHHHCCCCccccccc
Confidence 4556788986 99999999999876
No 10
>1odh_A MGCM1; transcription factor/DNA, transcription factor, DNA-binding domain, protein/DNA complex; 2.85A {Mus musculus} SCOP: d.239.1.1
Probab=12.76 E-value=1e+02 Score=27.67 Aligned_cols=11 Identities=55% Similarity=1.316 Sum_probs=9.9
Q ss_pred cccCCCCCCCC
Q 017677 153 KGSHNHPKPTS 163 (368)
Q Consensus 153 ~G~Hnh~~p~~ 163 (368)
+|.|.||+|..
T Consensus 149 KG~HDHpRPe~ 159 (174)
T 1odh_A 149 KGEHDHPRPET 159 (174)
T ss_dssp ECCCCSCCCCC
T ss_pred ccccCCCCCCC
Confidence 69999999886
Done!