BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017679
(368 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4A26|A Chain A, The Crystal Structure Of Leishmania Major N5,N10-
Methylenetetrahydrofolate DehydrogenaseCYCLOHYDROLASE
pdb|4A26|B Chain B, The Crystal Structure Of Leishmania Major N5,N10-
Methylenetetrahydrofolate DehydrogenaseCYCLOHYDROLASE
Length = 300
Score = 278 bits (712), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 149/302 (49%), Positives = 204/302 (67%), Gaps = 6/302 (1%)
Query: 70 NLQTATVIDGKSIAEEIRSGIDKEVRRMKKSIG-KVPGLAVILVGERRDSQTYVRNKIKA 128
++ +A +IDGK+IA IRS + +V +++ G +VPGLA I+VG+R DS+ YV+ K KA
Sbjct: 2 HMPSAQIIDGKAIAAAIRSELKDKVAALRELYGGRVPGLASIIVGQRMDSKKYVQLKHKA 61
Query: 129 CEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSLE 188
EVG+ S E + +++ + + N D + +GI+VQLPLP+HL+E + ++ +
Sbjct: 62 AAEVGMASFNVELPEDISQEVLEVNVEKLNNDPNCHGIIVQLPLPKHLNENRAIEKIHPH 121
Query: 189 KDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPT 248
KD D P+N+G L +GREP F PCT KG I LL R G+E+ GK AVV+GRSNIVG P
Sbjct: 122 KDADALLPVNVGLLHYKGREPPFTPCTAKGVIVLLKRCGIEMAGKRAVVLGRSNIVGAPV 181
Query: 249 SLLLQRHHATVSIVHALTKNPEQIT--SEADIVIAAAGVANLVRGSWLKPGAVVLDVGTC 306
+ LL + +ATV+IVH+ T + I ADIVIAA G V+G W+K GA V+DVGT
Sbjct: 182 AALLMKENATVTIVHSGTSTEDMIDYLRTADIVIAAMGQPGYVKGEWIKEGAAVVDVGTT 241
Query: 307 PVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYG 366
PV DPS + GYRL+GDVC+EEA A+ I+PVPGGVGPMT+AMLL NTL++ K A G
Sbjct: 242 PVP---DPSRKDGYRLVGDVCFEEAAARAAWISPVPGGVGPMTIAMLLENTLEAFKAALG 298
Query: 367 FT 368
+
Sbjct: 299 VS 300
>pdb|4A5O|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa N5, N10-
Methylenetetrahydrofolate Dehydrogenase-Cyclohydrolase
(Fold)
pdb|4A5O|B Chain B, Crystal Structure Of Pseudomonas Aeruginosa N5, N10-
Methylenetetrahydrofolate Dehydrogenase-Cyclohydrolase
(Fold)
pdb|4A5O|C Chain C, Crystal Structure Of Pseudomonas Aeruginosa N5, N10-
Methylenetetrahydrofolate Dehydrogenase-Cyclohydrolase
(Fold)
pdb|4A5O|D Chain D, Crystal Structure Of Pseudomonas Aeruginosa N5, N10-
Methylenetetrahydrofolate Dehydrogenase-Cyclohydrolase
(Fold)
Length = 286
Score = 249 bits (636), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 140/293 (47%), Positives = 184/293 (62%), Gaps = 11/293 (3%)
Query: 73 TATVIDGKSIAEEIRSGIDKEVRRMKKSIGKVPGLAVILVGERRDSQTYVRNKIKACEEV 132
TA +IDGK+IA +R I + V ++ +VPGLAVILVG SQ YV +K K CEEV
Sbjct: 4 TAQLIDGKAIAANLRQQIAQRVTERRQQGLRVPGLAVILVGTDPASQVYVAHKRKDCEEV 63
Query: 133 GIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVD 192
G S + ++D++L + N D +I+GILVQLPLP HLD +L+ + +KDVD
Sbjct: 64 GFLSQAYDLPAETSQDDLLALIDRLNDDPAIDGILVQLPLPAHLDASLLLERIHPDKDVD 123
Query: 193 GFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLL 252
GFHP NIG LA R PL PCTPKG + LL +G ++ G +AVV+G SNIVG P +L L
Sbjct: 124 GFHPYNIGRLAQ--RMPLLRPCTPKGIMTLLASTGADLYGMDAVVVGASNIVGRPMALEL 181
Query: 253 QRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSV 312
TV++ H T++ S AD+V+ AAG LV+G W+K GA+V+DVG
Sbjct: 182 LLGGCTVTVTHRFTRDLADHVSRADLVVVAAGKPGLVKGEWIKEGAIVIDVGI------- 234
Query: 313 DPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAY 365
+ + RL+GDV YE A + AS ITPVPGGVGPMT A LL NTL +A+ +
Sbjct: 235 --NRQADGRLVGDVEYEVAAQRASWITPVPGGVGPMTRACLLENTLHAAEHLH 285
>pdb|1DIA|A Chain A, Human Methylenetetrahydrofolate Dehydrogenase
Cyclohydrolase Complexed With Nadp And Inhibitor
Ly249543
pdb|1DIA|B Chain B, Human Methylenetetrahydrofolate Dehydrogenase
Cyclohydrolase Complexed With Nadp And Inhibitor
Ly249543
pdb|1DIB|A Chain A, Human Methylenetetrahydrofolate Dehydrogenase
Cyclohydrolase Complexed With Nadp And Inhibitor
Ly345899
pdb|1DIB|B Chain B, Human Methylenetetrahydrofolate Dehydrogenase
Cyclohydrolase Complexed With Nadp And Inhibitor
Ly345899
pdb|1DIG|A Chain A, Human Methylenetetrahydrofolate Dehydrogenase
Cyclohydrolase Complexed With Nadp And Inhibitor
Ly374571
pdb|1DIG|B Chain B, Human Methylenetetrahydrofolate Dehydrogenase
Cyclohydrolase Complexed With Nadp And Inhibitor
Ly374571
Length = 306
Score = 248 bits (632), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 128/293 (43%), Positives = 196/293 (66%), Gaps = 6/293 (2%)
Query: 74 ATVIDGKSIAEEIRSGIDKEVRRMKKSI-GKVPGLAVILVGERRDSQTYVRNKIKACEEV 132
A +++GK I+ +IR+ + +V ++K+ + G P LA++ VG R DS Y+ K+KA EE+
Sbjct: 4 AEILNGKEISAQIRARLKNQVTQLKEQVPGFTPRLAILQVGNRDDSNLYINVKLKAAEEI 63
Query: 133 GIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQH--LDEGKILDAVSLEKD 190
GIK+ + TE EV+ +++ N+DS+++G LVQLPL ++ ++++A++ EKD
Sbjct: 64 GIKATHIKLPRTTTESEVMKYITSLNEDSTVHGFLVQLPLDSENSINTEEVINAIAPEKD 123
Query: 191 VDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSL 250
VDG +N G LA FIPCTPKGC+EL+ +GV I G++AVV+GRS IVG P
Sbjct: 124 VDGLTSINAGRLARGDLNDCFIPCTPKGCLELIKETGVPIAGRHAVVVGRSKIVGAPMHD 183
Query: 251 LLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDV 310
LL ++ATV+ H+ T + ++ ++ DI++ A G +V+G W+KPGA+V+D C ++
Sbjct: 184 LLLWNNATVTTCHSKTAHLDEEVNKGDILVVATGQPEMVKGEWIKPGAIVID---CGINY 240
Query: 311 SVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKR 363
D G +++GDV Y+EA AS ITPVPGGVGPMTVAML+ +T++SAKR
Sbjct: 241 VPDDKKPNGRKVVGDVAYDEAKERASFITPVPGGVGPMTVAMLMQSTVESAKR 293
>pdb|1A4I|A Chain A, Human Tetrahydrofolate Dehydrogenase CYCLOHYDROLASE
pdb|1A4I|B Chain B, Human Tetrahydrofolate Dehydrogenase CYCLOHYDROLASE
Length = 301
Score = 247 bits (631), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 128/293 (43%), Positives = 196/293 (66%), Gaps = 6/293 (2%)
Query: 74 ATVIDGKSIAEEIRSGIDKEVRRMKKSI-GKVPGLAVILVGERRDSQTYVRNKIKACEEV 132
A +++GK I+ +IR+ + +V ++K+ + G P LA++ VG R DS Y+ K+KA EE+
Sbjct: 4 AEILNGKEISAQIRARLKNQVTQLKEQVPGFTPRLAILQVGNRDDSNLYINVKLKAAEEI 63
Query: 133 GIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQH--LDEGKILDAVSLEKD 190
GIK+ + TE EV+ +++ N+DS+++G LVQLPL ++ ++++A++ EKD
Sbjct: 64 GIKATHIKLPRTTTESEVMKYITSLNEDSTVHGFLVQLPLDSENSINTEEVINAIAPEKD 123
Query: 191 VDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSL 250
VDG +N G LA FIPCTPKGC+EL+ +GV I G++AVV+GRS IVG P
Sbjct: 124 VDGLTSINAGRLARGDLNDCFIPCTPKGCLELIKETGVPIAGRHAVVVGRSKIVGAPMHD 183
Query: 251 LLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDV 310
LL ++ATV+ H+ T + ++ ++ DI++ A G +V+G W+KPGA+V+D C ++
Sbjct: 184 LLLWNNATVTTCHSKTAHLDEEVNKGDILVVATGQPEMVKGEWIKPGAIVID---CGINY 240
Query: 311 SVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKR 363
D G +++GDV Y+EA AS ITPVPGGVGPMTVAML+ +T++SAKR
Sbjct: 241 VPDDKKPNGRKVVGDVAYDEAKERASFITPVPGGVGPMTVAMLMQSTVESAKR 293
>pdb|3P2O|A Chain A, Crystal Structure Of Fold Bifunctional Protein From
Campylobacter Jejuni
pdb|3P2O|B Chain B, Crystal Structure Of Fold Bifunctional Protein From
Campylobacter Jejuni
Length = 285
Score = 240 bits (613), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 133/288 (46%), Positives = 189/288 (65%), Gaps = 11/288 (3%)
Query: 75 TVIDGKSIAEEIRSGIDKEVRRMKKSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGI 134
T++DGK+++ +I+ + KE + KS G LAVILVG+ SQTYV++K KACEE GI
Sbjct: 5 TLLDGKALSAKIKEEL-KEKNQFLKSKGIESCLAVILVGDNPASQTYVKSKAKACEECGI 63
Query: 135 KSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGF 194
KS+V + T++E+L ++ N D S++GILVQLPLP H+ + IL+++ KDVDGF
Sbjct: 64 KSLVYHLNENITQNELLALINTLNHDDSVHGILVQLPLPDHICKDLILESIISSKDVDGF 123
Query: 195 HPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQR 254
HP+N+G L + G E F+PCTP G +LL +++ GK+AV+IG SNIVG P + L
Sbjct: 124 HPINVGYLNL-GLESGFLPCTPLGVXKLLKAYEIDLEGKDAVIIGASNIVGRPXATXLLN 182
Query: 255 HHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDP 314
ATVS+ H TK+ T +AD++I AAG NL+R +K G +V+DVG ++
Sbjct: 183 AGATVSVCHIKTKDLSLYTRQADLIIVAAGCVNLLRSDXVKEGVIVVDVGINRLESG--- 239
Query: 315 SCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAK 362
+++GDV +EE + +S ITPVPGGVGP T+A LL NT+ SAK
Sbjct: 240 ------KIVGDVDFEEVSKKSSYITPVPGGVGPXTIAXLLENTVKSAK 281
>pdb|1B0A|A Chain A, 5,10, Methylene-Tetrahydropholate
DehydrogenaseCYCLOHYDROLASE FROM E COLI
Length = 288
Score = 239 bits (610), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 131/287 (45%), Positives = 179/287 (62%), Gaps = 11/287 (3%)
Query: 74 ATVIDGKSIAEEIRSGIDKEVRRMKKSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVG 133
A +IDGK+IA+++RS + ++V+ + + PGLAV+LVG SQ YV +K KACEEVG
Sbjct: 3 AKIIDGKTIAQQVRSEVAQKVQARIAAGLRAPGLAVVLVGSNPASQIYVASKRKACEEVG 62
Query: 134 IKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDG 193
S + + +E E+L + N D++I+GILVQLPLP +D K+L+ + +KDVDG
Sbjct: 63 FVSRSYDLPETTSEAELLELIDTLNADNTIDGILVQLPLPAGIDNVKVLERIHPDKDVDG 122
Query: 194 FHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQ 253
FHP N+G L R P PCTP+G + LL R ++ G NAVVIG SNIVG P S+ L
Sbjct: 123 FHPYNVGRLCQRA--PRLRPCTPRGIVTLLERYNIDTFGLNAVVIGASNIVGRPMSMELL 180
Query: 254 RHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVD 313
T ++ H TKN AD++I A G + G W+K GA+V+DVG
Sbjct: 181 LAGCTTTVTHRFTKNLRHHVENADLLIVAVGKPGFIPGDWIKEGAIVIDVGIN------- 233
Query: 314 PSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDS 360
E G +++GDV +E+A + AS ITPVPGGVGPMTVA L+ NTL +
Sbjct: 234 -RLENG-KVVGDVVFEDAAKRASYITPVPGGVGPMTVATLIENTLQA 278
>pdb|3L07|A Chain A, Methylenetetrahydrofolate
DehydrogenaseMETHENYLTETRAHYDROFOLATE Cyclohydrolase,
Putative Bifunctional Protein Fold From Francisella
Tularensis.
pdb|3L07|B Chain B, Methylenetetrahydrofolate
DehydrogenaseMETHENYLTETRAHYDROFOLATE Cyclohydrolase,
Putative Bifunctional Protein Fold From Francisella
Tularensis
Length = 285
Score = 218 bits (555), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 119/288 (41%), Positives = 171/288 (59%), Gaps = 11/288 (3%)
Query: 76 VIDGKSIAEEIRSGIDKEVRRMKKSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIK 135
+IDGKS++++++ + +V+ K P L I+VG S+TYV +K KAC +VGI
Sbjct: 6 LIDGKSLSKDLKERLATQVQEYKHHTAITPKLVAIIVGNDPASKTYVASKEKACAQVGID 65
Query: 136 SIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFH 195
S V + TE E+L + N DSS++ ILVQLPLP H+++ ++ ++ EKDVDGFH
Sbjct: 66 SQVITLPEHTTESELLELIDQLNNDSSVHAILVQLPLPAHINKNNVIYSIKPEKDVDGFH 125
Query: 196 PLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRH 255
P N+G L +R ++ L CTPKG + +L G++ G AVV+G SN+VG P S LL
Sbjct: 126 PTNVGRLQLRDKKCLE-SCTPKGIMTMLREYGIKTEGAYAVVVGASNVVGKPVSQLLLNA 184
Query: 256 HATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPS 315
ATV+ H T + + T++ADI+I A G N + +K GAVV+DVG VD
Sbjct: 185 KATVTTCHRFTTDLKSHTTKADILIVAVGKPNFITADMVKEGAVVIDVGINHVD------ 238
Query: 316 CEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKR 363
+++GDV + + ITPVPGGVGPMT+ LL NT A+
Sbjct: 239 ----GKIVGDVDFAAVKDKVAAITPVPGGVGPMTITELLYNTFQCAQE 282
>pdb|4B4U|A Chain A, Crystal Structure Of Acinetobacter Baumannii N5,
N10-Methylenetetrahydrofolate
Dehydrogenase-Cyclohydrolase (Fold) Complexed With Nadp
Cofactor
pdb|4B4U|B Chain B, Crystal Structure Of Acinetobacter Baumannii N5,
N10-Methylenetetrahydrofolate
Dehydrogenase-Cyclohydrolase (Fold) Complexed With Nadp
Cofactor
pdb|4B4V|A Chain A, Crystal Structure Of Acinetobacter Baumannii N5, N10-
Methylenetetrahydrofolate Dehydrogenase-Cyclohydrolase
(Fold) Complexed With Nadp Cofactor And Inhibitor
Ly354899
pdb|4B4V|B Chain B, Crystal Structure Of Acinetobacter Baumannii N5, N10-
Methylenetetrahydrofolate Dehydrogenase-Cyclohydrolase
(Fold) Complexed With Nadp Cofactor And Inhibitor
Ly354899
pdb|4B4W|A Chain A, Crystal Structure Of Acinetobacter Baumannii N5,
N10-Methylenetetrahydrofolate
Dehydrogenase-Cyclohydrolase (Fold) Complexed With Nadp
Cofactor And An Inhibitor
pdb|4B4W|B Chain B, Crystal Structure Of Acinetobacter Baumannii N5,
N10-Methylenetetrahydrofolate
Dehydrogenase-Cyclohydrolase (Fold) Complexed With Nadp
Cofactor And An Inhibitor
Length = 303
Score = 209 bits (532), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 115/295 (38%), Positives = 175/295 (59%), Gaps = 12/295 (4%)
Query: 72 QTATVIDGKSIAEEIRSGIDKEVRRMKKSIGKVPGLAVILVGERRDSQTYVRNKIKACEE 131
A V+DG+++A++I + V +K G+ P LA ILVG+ S TYVR K AC
Sbjct: 21 HMALVLDGRALAKQIEENLLVRVEALKAKTGRTPILATILVGDDGASATYVRMKGNACRR 80
Query: 132 VGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDV 191
VG+ S+ E T +++L + N + ++GIL+Q P+P +DE DA+SL KDV
Sbjct: 81 VGMDSLKIELPQETTTEQLLAEIEKLNANPDVHGILLQHPVPAQIDERACFDAISLAKDV 140
Query: 192 DGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLL 251
DG L G +AM E + TP G + +L + +EI GK+AVV+GRS I+G P +++
Sbjct: 141 DGVTCLGFGRMAM--GEAAYGSATPAGIMTILKENNIEIAGKHAVVVGRSAILGKPMAMM 198
Query: 252 LQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVS 311
L + +ATV+I H+ T+N ++ +ADI++ A G A L++ W+K GAVV+D G P D
Sbjct: 199 LLQANATVTICHSRTQNLPELVKQADIIVGAVGKAELIQKDWIKQGAVVVDAGFHPRDGG 258
Query: 312 VDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYG 366
+GD+ + +AS TPVPGGVGPMT+ L+ T+++A++A G
Sbjct: 259 G----------VGDIQLQGIEEIASAYTPVPGGVGPMTITTLIRQTVEAAEKALG 303
>pdb|2C2X|A Chain A, Three Dimensional Structure Of Bifunctional
Methylenetetrahydrofolate Dehydrogenase-Cyclohydrolase
From Mycobacterium Tuberculosis
pdb|2C2X|B Chain B, Three Dimensional Structure Of Bifunctional
Methylenetetrahydrofolate Dehydrogenase-Cyclohydrolase
From Mycobacterium Tuberculosis
pdb|2C2Y|A Chain A, Three Dimensional Structure Of Bifunctional
Methylenetetrahydrofolate Dehydrogenase-Cyclohydrolase
From Mycobacterium Tuberculosis
Length = 281
Score = 196 bits (499), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 118/292 (40%), Positives = 166/292 (56%), Gaps = 16/292 (5%)
Query: 74 ATVIDGKSIAEEIRSGIDKEVRRMKKSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVG 133
A ++DGK+ +EI + + V + + G+ PGL ILVG+ SQ YVR K C +VG
Sbjct: 3 AIMLDGKATRDEIFGDLKQRVAALDAA-GRTPGLGTILVGDDPGSQAYVRGKHADCAKVG 61
Query: 134 IKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDG 193
I SI + + + + N + G +VQLPLP+HLDE L+ V KD DG
Sbjct: 62 ITSIRRDLPADISTATLNETIDELNANPDCTGYIVQLPLPKHLDENAALERVDPAKDADG 121
Query: 194 FHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQ 253
HP N+G L + PL PCTP+G + LL R + I G + VVIGR VG P LLL
Sbjct: 122 LHPTNLGRLVLGTPAPL--PCTPRGIVHLLRRYDISIAGAHVVVIGRGVTVGRPLGLLLT 179
Query: 254 R--HHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVS 311
R +ATV++ H T++ +T +ADIV+AA GVA+L+ ++PGA V+DVG D
Sbjct: 180 RRSENATVTLCHTGTRDLPALTRQADIVVAAVGVAHLLTADMVRPGAAVIDVGVSRTDDG 239
Query: 312 VDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKR 363
L+GDV + + LA ++P PGGVGP+T A LL+N ++ A+R
Sbjct: 240 ----------LVGDV-HPDVWELAGHVSPNPGGVGPLTRAFLLTNVVELAER 280
>pdb|3NGL|A Chain A, Crystal Structure Of Bifunctional
5,10-Methylenetetrahydrofolate Dehydrogenase
CYCLOHYDROLASE FROM THERMOPLASMA ACIDOPHILUM
pdb|3NGL|C Chain C, Crystal Structure Of Bifunctional
5,10-Methylenetetrahydrofolate Dehydrogenase
CYCLOHYDROLASE FROM THERMOPLASMA ACIDOPHILUM
pdb|3NGX|A Chain A, Crystal Structure Of Bifunctional
5,10-Methylenetetrahydrofolate Dehydrogenase
CYCLOHYDROLASE FROM THERMOPLASMA ACIDOPHILUM
pdb|3NGX|B Chain B, Crystal Structure Of Bifunctional
5,10-Methylenetetrahydrofolate Dehydrogenase
CYCLOHYDROLASE FROM THERMOPLASMA ACIDOPHILUM
Length = 276
Score = 139 bits (349), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 90/288 (31%), Positives = 152/288 (52%), Gaps = 21/288 (7%)
Query: 76 VIDGKSIAEEIRSGIDKEVRRMKKSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIK 135
++ G+ IAE+ + + R G P L +I +G+ + Y R KI+ +++GI
Sbjct: 3 ILRGEEIAEKKAENLHGIIERS----GLEPSLKLIQIGDNEAASIYARAKIRRGKKIGIA 58
Query: 136 SIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFH 195
+ ++ D +D +L + + +D INGI+++ PLP+ D +I+ + KDVD
Sbjct: 59 VDLEKYDDISMKD-LLKRIDDLAKDPQINGIMIENPLPKGFDYYEIVRNIPYYKDVDALS 117
Query: 196 PLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAV-VIGRSNIVGLPTSLLLQR 254
P N G +A+ RE +P TP+ I+++ G +N V ++ RS +VG P S++L
Sbjct: 118 PYNQGLIAL-NRE-FLVPATPRAVIDIMDYYGYH---ENTVTIVNRSPVVGRPLSMMLLN 172
Query: 255 HHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDP 314
+ TVS+ H+ TK+ +T + IV+ A G + + PG+VV+DVG V+ V
Sbjct: 173 RNYTVSVCHSKTKDIGSMTRSSKIVVVAVGRPGFLNREMVTPGSVVIDVGINYVNDKV-- 230
Query: 315 SCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAK 362
+GD +E+ ITPVPGGVGP+T +L N + +A+
Sbjct: 231 --------VGDANFEDLSEYVEAITPVPGGVGPITATNILENVVKAAE 270
>pdb|1EDZ|A Chain A, Structure Of The Nad-Dependent 5,10-
Methylenetetrahydrofolate Dehydrogenase From
Saccharomyces Cerevisiae
pdb|1EE9|A Chain A, Crystal Structure Of The Nad-Dependent 5,10-
Methylenetetrahydrofolate Dehydrogenase From
Saccharomyces Cerevisiae Complexed With Nad
Length = 320
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 85/310 (27%), Positives = 127/310 (40%), Gaps = 45/310 (14%)
Query: 81 SIAEEIRSGIDKEVRRMKKSI-GKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVT 139
+AE + I V KK+ G+ P L L ++ Y K E +G + +
Sbjct: 12 KVAETFNTEIINNVEEYKKTHNGQGPLLVGFLANNDPAAKMYATWTQKTSESMGFRYDLR 71
Query: 140 EFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPL-- 197
D +D + A+ N D S+NGI+V P+ + + + V EKDV+G + +
Sbjct: 72 VIED---KDFLEEAIIQANGDDSVNGIMVYFPVFGNAQDQYLQQVVCKEKDVEGLNHVYY 128
Query: 198 -----NIGNLAMRGREPLFIPCTPKGCIEL---------LIRSGVEIMGKNAVVIGRSNI 243
N+ L R +PCTP +++ L+ G + GK +VI RS I
Sbjct: 129 QNLYHNVRYLDKENRLKSILPCTPLAIVKILEFLKIYNNLLPEGNRLYGKKCIVINRSEI 188
Query: 244 VGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGS--WLKPGAVVL 301
VG P + LL ATV V N ++ T + + V +L S LK ++
Sbjct: 189 VGRPLAALLANDGATVYSVDV--NNIQKFTRGESLKLNKHHVEDLGEYSEDLLKKCSLDS 246
Query: 302 DVGTCPVDVSVDPSCEYG----YRLMGDVCY---------EEAMRLASVITPVPGGVGPM 348
DV V PS Y Y G VC ++ AS+ P+ G V
Sbjct: 247 DVVITGV-----PSENYKFPTEYIKEGAVCINFACTKNFSDDVKEKASLYVPMTGKV--- 298
Query: 349 TVAMLLSNTL 358
T+AMLL N L
Sbjct: 299 TIAMLLRNML 308
>pdb|3C3X|A Chain A, The Multiple Phenylpropene Synthases In Both Clarkia
Breweri And Petunia Hybrida Represent Two Distinct
Lineages
pdb|3C3X|B Chain B, The Multiple Phenylpropene Synthases In Both Clarkia
Breweri And Petunia Hybrida Represent Two Distinct
Lineages
Length = 318
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 25/40 (62%)
Query: 161 SSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIG 200
++ ++ L +PQ+LD+ KIL+A+ + ++ F P + G
Sbjct: 78 KKVDVVISALAVPQYLDQFKILEAIKVAGNIKRFLPSDFG 117
>pdb|4F91|B Chain B, Brr2 Helicase Region
Length = 1724
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 248 TSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVG 304
T+LLLQ H + + + L + E+I S+A I + A V L WL P +++
Sbjct: 1490 TNLLLQAHLSRMQLSAELQSDTEEILSKA-IRLIQACVDVLSSNGWLSPALAAMELA 1545
>pdb|4F92|B Chain B, Brr2 Helicase Region S1087l
pdb|4F93|B Chain B, Brr2 Helicase Region S1087l, Mg-Atp
Length = 1724
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 248 TSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVG 304
T+LLLQ H + + + L + E+I S+A I + A V L WL P +++
Sbjct: 1490 TNLLLQAHLSRMQLSAELQSDTEEILSKA-IRLIQACVDVLSSNGWLSPALAAMELA 1545
>pdb|3ADY|A Chain A, Crystal Structure Of Dotd From Legionella
Length = 148
Score = 28.5 bits (62), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Query: 50 EIWTPPNSRDCNPLPQRNCSNLQTATVIDGKSIAEEIRSGIDKEVRRMKKSIGKVPGLAV 109
++ TPP+ + +P N NLQ +D EE+ + I K + +GK P + V
Sbjct: 45 KVITPPSKDNTLTIP--NAYNLQARASVDWSGPIEELTARIAKAAHFRFRVLGKSPSVPV 102
Query: 110 ILVGERRD 117
++ +D
Sbjct: 103 LISISTKD 110
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,407,647
Number of Sequences: 62578
Number of extensions: 417667
Number of successful extensions: 1713
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1671
Number of HSP's gapped (non-prelim): 22
length of query: 368
length of database: 14,973,337
effective HSP length: 100
effective length of query: 268
effective length of database: 8,715,537
effective search space: 2335763916
effective search space used: 2335763916
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)