RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 017679
(368 letters)
>gnl|CDD|178485 PLN02897, PLN02897, tetrahydrofolate dehydrogenase/cyclohydrolase,
putative.
Length = 345
Score = 564 bits (1455), Expect = 0.0
Identities = 238/330 (72%), Positives = 278/330 (84%), Gaps = 7/330 (2%)
Query: 36 RIIMSPPLITLDLPEIWTPPNSRDCNPLPQRNCSNLQTATVIDGKSIAEEIRSGIDKEVR 95
I++SPPL++LDLPE W P + +P P + Q VIDG IAEEIR+ I EVR
Sbjct: 22 SILVSPPLVSLDLPENWIPYS----DPPPPVSFETEQKTVVIDGNVIAEEIRTKIASEVR 77
Query: 96 RMKKSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALS 155
+MKK++GKVPGLAV+LVG++RDSQTYVRNKIKACEE GIKS++ E + CTE ++L+AL
Sbjct: 78 KMKKAVGKVPGLAVVLVGQQRDSQTYVRNKIKACEETGIKSLLAELPEDCTEGQILSALR 137
Query: 156 NYNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCT 215
+N+D+SI+GILVQLPLPQHLDE KIL+ V LEKDVDGFHPLN+GNLAMRGREPLF+ CT
Sbjct: 138 KFNEDTSIHGILVQLPLPQHLDESKILNMVRLEKDVDGFHPLNVGNLAMRGREPLFVSCT 197
Query: 216 PKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSE 275
PKGC+ELLIRSGVEI GKNAVVIGRSNIVGLP SLLLQRH ATVS VHA TK+PEQIT +
Sbjct: 198 PKGCVELLIRSGVEIAGKNAVVIGRSNIVGLPMSLLLQRHDATVSTVHAFTKDPEQITRK 257
Query: 276 ADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLA 335
ADIVIAAAG+ NLVRGSWLKPGAVV+DVGT PV+ D SCE+GYRL+GDVCYEEA+ +A
Sbjct: 258 ADIVIAAAGIPNLVRGSWLKPGAVVIDVGTTPVE---DSSCEFGYRLVGDVCYEEALGVA 314
Query: 336 SVITPVPGGVGPMTVAMLLSNTLDSAKRAY 365
S ITPVPGGVGPMT+ MLL NTLD+AKR +
Sbjct: 315 SAITPVPGGVGPMTITMLLCNTLDAAKRIF 344
>gnl|CDD|215332 PLN02616, PLN02616, tetrahydrofolate dehydrogenase/cyclohydrolase,
putative.
Length = 364
Score = 432 bits (1111), Expect = e-152
Identities = 205/294 (69%), Positives = 238/294 (80%), Gaps = 3/294 (1%)
Query: 74 ATVIDGKSIAEEIRSGIDKEVRRMKKSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVG 133
A VIDGK++A++IR I EV RMK+SIG VPGLAVILVG+R+DS TYVRNK KAC+ VG
Sbjct: 73 AKVIDGKAVAKKIRDEITIEVSRMKESIGVVPGLAVILVGDRKDSATYVRNKKKACDSVG 132
Query: 134 IKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDG 193
I S + TE EVL +S +N D S++GILVQLPLP H+DE IL+AVS+EKDVDG
Sbjct: 133 INSFEVRLPEDSTEQEVLKFISGFNNDPSVHGILVQLPLPSHMDEQNILNAVSIEKDVDG 192
Query: 194 FHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQ 253
FHPLNIG LAMRGREPLF+PCTPKGCIELL R VEI GK AVVIGRSNIVG+P +LLLQ
Sbjct: 193 FHPLNIGRLAMRGREPLFVPCTPKGCIELLHRYNVEIKGKRAVVIGRSNIVGMPAALLLQ 252
Query: 254 RHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVD 313
R ATVSIVH+ TKNPE+IT EADI+I+A G N+VRGSW+KPGAVV+DVG PV+ D
Sbjct: 253 REDATVSIVHSRTKNPEEITREADIIISAVGQPNMVRGSWIKPGAVVIDVGINPVE---D 309
Query: 314 PSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYGF 367
S GYRL+GDVCYEEA ++AS +TPVPGGVGPMT+AMLLSNTL SAKR + F
Sbjct: 310 ASSPRGYRLVGDVCYEEACKVASAVTPVPGGVGPMTIAMLLSNTLTSAKRIHNF 363
>gnl|CDD|178131 PLN02516, PLN02516, methylenetetrahydrofolate dehydrogenase
(NADP+).
Length = 299
Score = 400 bits (1030), Expect = e-140
Identities = 180/294 (61%), Positives = 227/294 (77%), Gaps = 3/294 (1%)
Query: 73 TATVIDGKSIAEEIRSGIDKEVRRMKKSIGKVPGLAVILVGERRDSQTYVRNKIKACEEV 132
A +IDGK+IA+ IRS I +EV ++ + GKVPGLAV++VG R+DSQTYV K KAC EV
Sbjct: 8 VAQIIDGKAIAKAIRSEIAEEVAQLSEKHGKVPGLAVVIVGSRKDSQTYVNMKRKACAEV 67
Query: 133 GIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVD 192
GIKS + + +E E+++ + N + ++GILVQLPLP+H++E KIL+ +SLEKDVD
Sbjct: 68 GIKSFDVDLPENISEAELISKVHELNANPDVHGILVQLPLPKHINEEKILNEISLEKDVD 127
Query: 193 GFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLL 252
GFHPLNIG LAM+GREPLF+PCTPKGC+ELL RSG+ I GK AVV+GRSNIVGLP SLLL
Sbjct: 128 GFHPLNIGKLAMKGREPLFLPCTPKGCLELLSRSGIPIKGKKAVVVGRSNIVGLPVSLLL 187
Query: 253 QRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSV 312
+ ATV++VH+ T +PE I EADIVIAAAG A +++G W+KPGA V+DVGT V
Sbjct: 188 LKADATVTVVHSRTPDPESIVREADIVIAAAGQAMMIKGDWIKPGAAVIDVGTNAVS--- 244
Query: 313 DPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYG 366
DPS + GYRL+GDV + E ++A ITPVPGGVGPMTVAMLL NT+D AKR +
Sbjct: 245 DPSKKSGYRLVGDVDFAEVSKVAGWITPVPGGVGPMTVAMLLKNTVDGAKRVFA 298
>gnl|CDD|223268 COG0190, FolD, 5,10-methylene-tetrahydrofolate
dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase
[Coenzyme metabolism].
Length = 283
Score = 357 bits (918), Expect = e-123
Identities = 147/290 (50%), Positives = 195/290 (67%), Gaps = 11/290 (3%)
Query: 75 TVIDGKSIAEEIRSGIDKEVRRMKKSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGI 134
+IDGK++AE+IR + ++V +K G PGLAVILVG+ SQ YVR+K KA EE+GI
Sbjct: 1 MIIDGKALAEKIREELKEKVEALKAKGGFKPGLAVILVGDDPASQVYVRSKKKAAEEIGI 60
Query: 135 KSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGF 194
S + + + TE+E+L + N D ++GILVQLPLP+HLDE K+L A+ EKDVDGF
Sbjct: 61 ASELYDLPEDITEEELLALIDELNADPEVDGILVQLPLPKHLDEQKLLQAIDPEKDVDGF 120
Query: 195 HPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQR 254
HP N+G LA EP F+PCTP G + LL G+++ GKN VV+GRSNIVG P +LLL
Sbjct: 121 HPYNLGKLA--QGEPGFLPCTPAGIMTLLEEYGIDLRGKNVVVVGRSNIVGKPLALLLLN 178
Query: 255 HHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDP 314
+ATV++ H+ TK+ IT ADIV+ A G + ++ +KPGAVV+DVG V+
Sbjct: 179 ANATVTVCHSRTKDLASITKNADIVVVAVGKPHFIKADMVKPGAVVIDVGINRVN----- 233
Query: 315 SCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRA 364
+L+GDV ++ AS ITPVPGGVGPMTVAMLL NTL +A+R
Sbjct: 234 ----DGKLVGDVDFDSVKEKASAITPVPGGVGPMTVAMLLENTLKAAERQ 279
>gnl|CDD|184560 PRK14190, PRK14190, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 284
Score = 340 bits (874), Expect = e-117
Identities = 144/294 (48%), Positives = 193/294 (65%), Gaps = 12/294 (4%)
Query: 73 TATVIDGKSIAEEIRSGIDKEVRRMKKSIGKVPGLAVILVGERRDSQTYVRNKIKACEEV 132
A +IDGK +A+E R + +EV ++K+ G VPGLAVILVG+ S +YVR K KA E+V
Sbjct: 2 MAVIIDGKEVAKEKREQLKEEVVKLKEQ-GIVPGLAVILVGDDPASHSYVRGKKKAAEKV 60
Query: 133 GIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVD 192
GI S + EF TE+E+L + N D INGILVQLPLP+H+DE +++ +S EKDVD
Sbjct: 61 GIYSELYEFPADITEEELLALIDRLNADPRINGILVQLPLPKHIDEKAVIERISPEKDVD 120
Query: 193 GFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLL 252
GFHP+N+G + + + F+PCTP G +ELL ++I GK+ VV+GRSNIVG P LL
Sbjct: 121 GFHPINVGRMML--GQDTFLPCTPHGILELLKEYNIDISGKHVVVVGRSNIVGKPVGQLL 178
Query: 253 QRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSV 312
+ATV+ H+ TKN ++T +ADI+I A G L+ +K GAVV+DVG +
Sbjct: 179 LNENATVTYCHSKTKNLAELTKQADILIVAVGKPKLITADMVKEGAVVIDVGVNRL---- 234
Query: 313 DPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYG 366
E G L GDV ++ AS ITPVPGGVGPMT+ ML+ NT++ AKRA G
Sbjct: 235 ----ENGK-LCGDVDFDNVKEKASYITPVPGGVGPMTITMLMHNTVELAKRAGG 283
>gnl|CDD|236760 PRK10792, PRK10792, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 285
Score = 327 bits (840), Expect = e-112
Identities = 137/289 (47%), Positives = 183/289 (63%), Gaps = 11/289 (3%)
Query: 73 TATVIDGKSIAEEIRSGIDKEVRRMKKSIGKVPGLAVILVGERRDSQTYVRNKIKACEEV 132
TA +IDGK+IA+++RS + ++V+ + + PGLAV+LVG SQ YV +K KACEEV
Sbjct: 2 TAKIIDGKTIAQQVRSEVAQKVQARVAAGLRAPGLAVVLVGSDPASQVYVASKRKACEEV 61
Query: 133 GIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVD 192
G S + + +E E+L + N D +I+GILVQLPLP H+D K+L+ + +KDVD
Sbjct: 62 GFVSRSYDLPETTSEAELLALIDELNADPTIDGILVQLPLPAHIDNVKVLERIHPDKDVD 121
Query: 193 GFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLL 252
GFHP N+G LA R PL PCTP+G + LL R G++ G NAVV+G SNIVG P SL L
Sbjct: 122 GFHPYNVGRLAQ--RIPLLRPCTPRGIMTLLERYGIDTYGLNAVVVGASNIVGRPMSLEL 179
Query: 253 QRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSV 312
TV++ H TKN AD+++ A G + G W+KPGA+V+DVG ++
Sbjct: 180 LLAGCTVTVCHRFTKNLRHHVRNADLLVVAVGKPGFIPGEWIKPGAIVIDVGINRLEDG- 238
Query: 313 DPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSA 361
+L+GDV +E A AS ITPVPGGVGPMTVA LL NTL +
Sbjct: 239 --------KLVGDVEFETAAERASWITPVPGGVGPMTVATLLENTLQAC 279
>gnl|CDD|184558 PRK14188, PRK14188, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 296
Score = 322 bits (827), Expect = e-109
Identities = 142/297 (47%), Positives = 194/297 (65%), Gaps = 10/297 (3%)
Query: 73 TATVIDGKSIAEEIRSGIDKEVRRMKKSIGKVPGLAVILVGERRDSQTYVRNKIKACEEV 132
AT+IDGK+ A ++R+ + EV R+K + G PGLAV+LVGE SQ YVR+K K +E
Sbjct: 1 MATIIDGKAFAADVRATVAAEVARLKAAHGVTPGLAVVLVGEDPASQVYVRSKGKQTKEA 60
Query: 133 GIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVD 192
G+ S + ++ E+L ++ N D +I+GILVQLPLP+HLD ++ A+ EKDVD
Sbjct: 61 GMASFEHKLPADTSQAELLALIARLNADPAIHGILVQLPLPKHLDSEAVIQAIDPEKDVD 120
Query: 193 GFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLL 252
G H +N G LA E +PCTP GC+ LL R ++ G NAVVIGRSN+VG P + LL
Sbjct: 121 GLHVVNAGRLA--TGETALVPCTPLGCMMLLRRVHGDLSGLNAVVIGRSNLVGKPMAQLL 178
Query: 253 QRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSV 312
+ATV+I H+ T++ + ADI++AA G +V+G W+KPGA V+DVG ++
Sbjct: 179 LAANATVTIAHSRTRDLPAVCRRADILVAAVGRPEMVKGDWIKPGATVIDVG-----INR 233
Query: 313 DPSCEYGY---RLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYG 366
P+ E G RL+GDV + EA +A ITPVPGGVGPMT+A LL+NTL +A RA G
Sbjct: 234 IPAPEKGEGKTRLVGDVAFAEAAEVAGAITPVPGGVGPMTIACLLANTLTAACRAAG 290
>gnl|CDD|184559 PRK14189, PRK14189, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 285
Score = 310 bits (795), Expect = e-105
Identities = 135/294 (45%), Positives = 190/294 (64%), Gaps = 12/294 (4%)
Query: 73 TATVIDGKSIAEEIRSGIDKEVRRMKKSIGKVPGLAVILVGERRDSQTYVRNKIKACEEV 132
TA +IDG ++++++R+ + + G PGLAVILVG+ SQ YVRNK+KACE+
Sbjct: 2 TAQLIDGNALSKQLRAEAAQRAAALTAR-GHQPGLAVILVGDNPASQVYVRNKVKACEDN 60
Query: 133 GIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVD 192
G S+ + +E E+L + N+D I+GILVQLPLP+H+D K+++A++ EKDVD
Sbjct: 61 GFHSLKDRYPADLSEAELLARIDELNRDPKIHGILVQLPLPKHIDSHKVIEAIAPEKDVD 120
Query: 193 GFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLL 252
GFH N G L M G +PLF PCTP G +++L G+ + G +AVVIGRSNIVG P ++LL
Sbjct: 121 GFHVANAGAL-MTG-QPLFRPCTPYGVMKMLESIGIPLRGAHAVVIGRSNIVGKPMAMLL 178
Query: 253 QRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSV 312
+ ATV+I H+ T++ T +ADIV+AA G N++ +KPGA V+DVG D
Sbjct: 179 LQAGATVTICHSKTRDLAAHTRQADIVVAAVGKRNVLTADMVKPGATVIDVGMNRDDAG- 237
Query: 313 DPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYG 366
+L GDV + +A ITPVPGGVGPMT+ MLL NT+++A+RA
Sbjct: 238 --------KLCGDVDFAGVKEVAGYITPVPGGVGPMTITMLLVNTIEAAERAAA 283
>gnl|CDD|172679 PRK14191, PRK14191, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 285
Score = 306 bits (785), Expect = e-103
Identities = 130/288 (45%), Positives = 181/288 (62%), Gaps = 11/288 (3%)
Query: 75 TVIDGKSIAEEIRSGIDKEVRRMKKSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGI 134
++DGK+++ +I + +++ + GK P LAVILVG+ SQTYV KIKACE VG+
Sbjct: 2 VLLDGKALSYKIEKDLKNKIQILTAQTGKRPKLAVILVGKDPASQTYVNMKIKACERVGM 61
Query: 135 KSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGF 194
S + + TE E+L+ + + N D +I+GILVQLPLP+H+D +L+A+ KDVDGF
Sbjct: 62 DSDLHTLQENTTEAELLSLIKDLNTDQNIDGILVQLPLPRHIDTKMVLEAIDPNKDVDGF 121
Query: 195 HPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQR 254
HPLNIG L + F+P TP G + LL +EI GK+ V+IG SNIVG P ++L+
Sbjct: 122 HPLNIGKLCS-QLDG-FVPATPMGVMRLLKHYHIEIKGKDVVIIGASNIVGKPLAMLMLN 179
Query: 255 HHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDP 314
A+VS+ H LTK+ T ADIV G +L++ S +K GAVV+D+G ++
Sbjct: 180 AGASVSVCHILTKDLSFYTQNADIVCVGVGKPDLIKASMVKKGAVVVDIGINRLNDG--- 236
Query: 315 SCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAK 362
RL+GDV +E AS ITPVPGGVGPMT+ LL NTL +A+
Sbjct: 237 ------RLVGDVDFENVAPKASFITPVPGGVGPMTIVSLLENTLIAAE 278
>gnl|CDD|172662 PRK14174, PRK14174, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 295
Score = 305 bits (783), Expect = e-103
Identities = 142/296 (47%), Positives = 190/296 (64%), Gaps = 7/296 (2%)
Query: 75 TVIDGKSIAEEIRSGIDKEVRRMKKSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGI 134
+IDGK ++ ++++ + V + GKVPGL VI+VGE SQ YVRNK K+C+E+G+
Sbjct: 2 LIIDGKKVSLDLKNELKTRVEAYRAKTGKVPGLTVIIVGEDPASQVYVRNKAKSCKEIGM 61
Query: 135 KSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGF 194
S V E TE+ +L + + N D ++GILVQ PLP+ +DE + A+ KDVDGF
Sbjct: 62 NSTVIELPADTTEEHLLKKIEDLNNDPDVHGILVQQPLPKQIDEFAVTLAIDPAKDVDGF 121
Query: 195 HPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLP-TSLLLQ 253
HP N+G L M + F+ CTP G +ELL R +E GK+ VV+GRSNIVG P +L+LQ
Sbjct: 122 HPENLGRLVMGHLDKCFVSCTPYGILELLGRYNIETKGKHCVVVGRSNIVGKPMANLMLQ 181
Query: 254 RHHA---TVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDV 310
+ TV+I H+ TK+ T +ADI+IAA G A + +KPGAVV+DVG ++
Sbjct: 182 KLKESNCTVTICHSATKDIPSYTRQADILIAAIGKARFITADMVKPGAVVIDVGINRIE- 240
Query: 311 SVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYG 366
DPS + GYRL+GDV YE AS ITPVPGGVGPMT+AMLL NTL S +R
Sbjct: 241 --DPSTKSGYRLVGDVDYEGVSAKASAITPVPGGVGPMTIAMLLKNTLQSFERVNN 294
>gnl|CDD|237636 PRK14186, PRK14186, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 297
Score = 304 bits (780), Expect = e-102
Identities = 137/294 (46%), Positives = 187/294 (63%), Gaps = 7/294 (2%)
Query: 73 TATVIDGKSIAEEIRSGIDKEVRRMKKSIGKVPGLAVILVGERRDSQTYVRNKIKACEEV 132
A ++DGK++A EI + ++ G+ PGLAV+ VG+ S YVRNK KAC V
Sbjct: 1 MALILDGKALAAEIEQRLQAQIESNLPKAGRPPGLAVLRVGDDPASAVYVRNKEKACARV 60
Query: 133 GIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVD 192
GI S ++ EV ++ NQD ++GIL+QLPLP+HLDE +L A+ +KD D
Sbjct: 61 GIASFGKHLPADTSQAEVEALIAQLNQDERVDGILLQLPLPKHLDEVPLLHAIDPDKDAD 120
Query: 193 GFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLL 252
G HPLN+G L ++G EP CTP G + LL ++I GK AVV+GRS +VG P +L+L
Sbjct: 121 GLHPLNLGRL-VKG-EPGLRSCTPAGVMRLLRSQQIDIAGKKAVVVGRSILVGKPLALML 178
Query: 253 QRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSV 312
+ATV+I H+ T++ IT EADI++AAAG NL+ +KPGAVV+DVG +
Sbjct: 179 LAANATVTIAHSRTQDLASITREADILVAAAGRPNLIGAEMVKPGAVVVDVG-----IHR 233
Query: 313 DPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYG 366
PS + RL GDV +EE +A+ ITPVPGGVGPMTV MLL NT+ S ++ +G
Sbjct: 234 LPSSDGKTRLCGDVDFEEVEPVAAAITPVPGGVGPMTVTMLLVNTVLSWQKRHG 287
>gnl|CDD|237634 PRK14179, PRK14179, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 284
Score = 302 bits (774), Expect = e-102
Identities = 135/290 (46%), Positives = 198/290 (68%), Gaps = 11/290 (3%)
Query: 74 ATVIDGKSIAEEIRSGIDKEVRRMKKSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVG 133
+IDGK++A+++++ + ++V ++K+ G VPGL VILVG+ SQ YVRNK ++ G
Sbjct: 2 TEIIDGKALAQKMQAELAEKVAKLKEEKGIVPGLVVILVGDNPASQVYVRNKERSALAAG 61
Query: 134 IKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDG 193
KS V + +++E+L+ + YNQD + +GILVQLPLP+H++E KIL A+ +KDVDG
Sbjct: 62 FKSEVVRLPETISQEELLDLIERYNQDPTWHGILVQLPLPKHINEEKILLAIDPKKDVDG 121
Query: 194 FHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQ 253
FHP+N G+L GR P+ IPCTP G +E+ VE+ GK+AVVIGRSNIVG P + LL
Sbjct: 122 FHPMNTGHL-WSGR-PVMIPCTPAGIMEMFREYNVELEGKHAVVIGRSNIVGKPMAQLLL 179
Query: 254 RHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVD 313
+ATV++ H+ T+N ++ +ADI++ A G + V ++K GAVV+DVG ++ D
Sbjct: 180 DKNATVTLTHSRTRNLAEVARKADILVVAIGRGHFVTKEFVKEGAVVIDVG-----MNRD 234
Query: 314 PSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKR 363
E G +L+GDV ++E +AS ITPVPGGVGPMT+ ML+ T +A R
Sbjct: 235 ---ENG-KLIGDVDFDEVAEVASYITPVPGGVGPMTITMLMEQTYQAALR 280
>gnl|CDD|184556 PRK14185, PRK14185, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 293
Score = 292 bits (750), Expect = 3e-98
Identities = 134/295 (45%), Positives = 189/295 (64%), Gaps = 9/295 (3%)
Query: 75 TVIDGKSIAEEIRSGIDKEVRRMKKSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGI 134
+IDGK+I+ +I+ I EV + GK P LA ILVG S+TYV NK+KACEE G
Sbjct: 2 QLIDGKAISAQIKQEIAAEVAEIVAKGGKRPHLAAILVGHDGGSETYVANKVKACEECGF 61
Query: 135 KSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGF 194
KS + + TE+E+L + NQD ++G +VQLPLP+H+ E K+++A+ KDVDGF
Sbjct: 62 KSSLIRYESDVTEEELLAKVRELNQDDDVDGFIVQLPLPKHISEQKVIEAIDYRKDVDGF 121
Query: 195 HPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLP-TSLLLQ 253
HP+N+G +++ P F+ TP G +ELL R +E GK VV+GRSNIVG P L++Q
Sbjct: 122 HPINVGRMSI--GLPCFVSATPNGILELLKRYHIETSGKKCVVLGRSNIVGKPMAQLMMQ 179
Query: 254 RHH---ATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDV 310
+ + TV++ H+ +KN ++ EADI+IAA G V+ +K GAVV+DVGT V
Sbjct: 180 KAYPGDCTVTVCHSRSKNLKKECLEADIIIAALGQPEFVKADMVKEGAVVIDVGTTRVP- 238
Query: 311 SVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAY 365
D + + G++L GDV ++E S ITPVPGGVGPMT+ L+ NTL + K+A
Sbjct: 239 --DATRKSGFKLTGDVKFDEVAPKCSYITPVPGGVGPMTIVSLMKNTLLAGKKAI 291
>gnl|CDD|237633 PRK14168, PRK14168, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 297
Score = 287 bits (736), Expect = 5e-96
Identities = 145/299 (48%), Positives = 188/299 (62%), Gaps = 7/299 (2%)
Query: 73 TATVIDGKSIAEEIRSGIDKEVRRMKKSIGKVPGLAVILVGERRDSQTYVRNKIKACEEV 132
+A +I G I EEI I EV +K+ GKVPGL ILVGE S +YV KIK +
Sbjct: 2 SAKIIKGTEIREEILEEIRGEVAELKEKYGKVPGLVTILVGESPASLSYVTLKIKTAHRL 61
Query: 133 GIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVD 192
G I + TE+E+L + YN D SI+GILVQLPLP+H++E K+L+A+ +KDVD
Sbjct: 62 GFHEIQDNQSVDITEEELLALIDKYNNDDSIHGILVQLPLPKHINEKKVLNAIDPDKDVD 121
Query: 193 GFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLL 252
GFHP+N+G L + G E F+PCTP G E+L+RSGVE G VV+GRSNIVG P + ++
Sbjct: 122 GFHPVNVGRLMIGGDEVKFLPCTPAGIQEMLVRSGVETSGAEVVVVGRSNIVGKPIANMM 181
Query: 253 QRH----HATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPV 308
+ +ATV+IVH +KN + ADI+I AAGV NLV+ W+KPGA V+DVG V
Sbjct: 182 TQKGPGANATVTIVHTRSKNLARHCQRADILIVAAGVPNLVKPEWIKPGATVIDVGVNRV 241
Query: 309 DVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYGF 367
+ L GDV ++ +A ITPVPGGVGPMT+AML+ NTL SAK
Sbjct: 242 GTNESTGKAI---LSGDVDFDAVKEIAGKITPVPGGVGPMTIAMLMRNTLKSAKFHLSL 297
>gnl|CDD|172658 PRK14170, PRK14170, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 284
Score = 283 bits (724), Expect = 2e-94
Identities = 144/290 (49%), Positives = 206/290 (71%), Gaps = 12/290 (4%)
Query: 76 VIDGKSIAEEIRSGIDKEVRRMKKSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIK 135
+IDGK +A+EI+ + +EV + K GK PGLAV+LVG+ + S+TYVRNK K EE G+K
Sbjct: 4 IIDGKKLAKEIQEKVTREVAELVK-EGKKPGLAVVLVGDNQASRTYVRNKQKRTEEAGMK 62
Query: 136 SIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFH 195
S++ E + TE+++L+ + N+D +I+GILVQLPLP+H+ E K++D +S +KDVDGFH
Sbjct: 63 SVLIELPENVTEEKLLSVVEELNEDKTIHGILVQLPLPEHISEEKVIDTISYDKDVDGFH 122
Query: 196 PLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRH 255
P+N+GNL + G++ F+PCTP G IEL+ +G +I GK AVVIGRSNIVG P + LL
Sbjct: 123 PVNVGNLFI-GKDS-FVPCTPAGIIELIKSTGTQIEGKRAVVIGRSNIVGKPVAQLLLNE 180
Query: 256 HATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPS 315
+ATV+I H+ TK+ Q+ EADI++ A G+A V+ ++KPGA+V+DVG
Sbjct: 181 NATVTIAHSRTKDLPQVAKEADILVVATGLAKFVKKDYIKPGAIVIDVGM---------D 231
Query: 316 CEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAY 365
+ +L GDV +++ + A ITPVPGGVGPMT+ MLL+NTL +AKR +
Sbjct: 232 RDENNKLCGDVDFDDVVEEAGFITPVPGGVGPMTITMLLANTLKAAKRIW 281
>gnl|CDD|184555 PRK14183, PRK14183, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 281
Score = 279 bits (714), Expect = 7e-93
Identities = 135/288 (46%), Positives = 187/288 (64%), Gaps = 11/288 (3%)
Query: 75 TVIDGKSIAEEIRSGIDKEVRRMKKSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGI 134
++DGK+++++I+ + KEV +K VPGLAVILVG+ S TYV+ K KAC+ VGI
Sbjct: 2 QILDGKALSDKIKENVKKEVDELKLVKNIVPGLAVILVGDDPASHTYVKMKAKACDRVGI 61
Query: 135 KSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGF 194
SI E ++ E+L ++ N + +I+GILVQLPLP+H+D KIL+A+ +KDVDGF
Sbjct: 62 YSITHEMPSTISQKEILETIAMMNNNPNIDGILVQLPLPKHIDTTKILEAIDPKKDVDGF 121
Query: 195 HPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQR 254
HP N+G L + G + F+PCTP G +ELL +++ GK+ V+G SNIVG P + LL
Sbjct: 122 HPYNVGRL-VTGLDG-FVPCTPLGVMELLEEYEIDVKGKDVCVVGASNIVGKPMAALLLN 179
Query: 255 HHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDP 314
+ATV I H TK+ + T +ADIVI G NL+ +K GA+V+D+G +
Sbjct: 180 ANATVDICHIFTKDLKAHTKKADIVIVGVGKPNLITEDMVKEGAIVIDIGINRTEDG--- 236
Query: 315 SCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAK 362
RL+GDV +E + S ITPVPGGVGPMT+AMLLSNTL +AK
Sbjct: 237 ------RLVGDVDFENVAKKCSYITPVPGGVGPMTIAMLLSNTLKAAK 278
>gnl|CDD|237637 PRK14193, PRK14193, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 284
Score = 271 bits (694), Expect = 9e-90
Identities = 130/300 (43%), Positives = 179/300 (59%), Gaps = 21/300 (7%)
Query: 72 QTATVIDGKSIAEEIRSGIDKEVRRMKKSIGKVPGLAVILVGERRDSQTYVRNKIKACEE 131
TA ++DGK+ A+EI++ + + V +K+ G PGL +LVG+ SQ YVR K + C E
Sbjct: 1 MTAIILDGKATADEIKADLAERVAALKEK-GITPGLGTVLVGDDPGSQAYVRGKHRDCAE 59
Query: 132 VGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDV 191
VGI SI + T++E+ + N D + G +VQLPLP+HLDE +L+ + KD
Sbjct: 60 VGITSIRRDLPADATQEELNAVIDELNADPACTGYIVQLPLPKHLDENAVLERIDPAKDA 119
Query: 192 DGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLL 251
DG HP N+G L + PL PCTP+G + LL R VE+ G + VVIGR VG P LL
Sbjct: 120 DGLHPTNLGRLVLNEPAPL--PCTPRGIVHLLRRYDVELAGAHVVVIGRGVTVGRPIGLL 177
Query: 252 LQRHH--ATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVD 309
L R ATV++ H T++ T ADI++AAAGVA+LV +KPGA VLDVG V
Sbjct: 178 LTRRSENATVTLCHTGTRDLAAHTRRADIIVAAAGVAHLVTADMVKPGAAVLDVG---VS 234
Query: 310 VSVDPSCEYGYRLMGDV---CYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYG 366
+ D +L+GDV +E +A ++P PGGVGPMT A LL+N ++ A+R G
Sbjct: 235 RAGD------GKLVGDVHPDVWE----VAGAVSPNPGGVGPMTRAFLLTNVVERAERRAG 284
>gnl|CDD|172682 PRK14194, PRK14194, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 301
Score = 271 bits (694), Expect = 1e-89
Identities = 136/293 (46%), Positives = 195/293 (66%), Gaps = 11/293 (3%)
Query: 71 LQTATVIDGKSIAEEIRSGIDKEVRRMKKSIGKVPGLAVILVGERRDSQTYVRNKIKACE 130
L +A +IDGK+ A + + + ++VR +K + G P LAVILVG SQ YVRNKI E
Sbjct: 1 LMSAKLIDGKAAAARVLAQVREDVRTLKAA-GIEPALAVILVGNDPASQVYVRNKILRAE 59
Query: 131 EVGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSLEKD 190
E GI+S+ ++ +L ++ N D S+NGIL+QLPLP H+DE ++L A++ KD
Sbjct: 60 EAGIRSLEHRLPADTSQARLLALIAELNADPSVNGILLQLPLPAHIDEARVLQAINPLKD 119
Query: 191 VDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSL 250
VDGFH N+G L+ +GR+ L PCTP GC+ LL + ++ GK+AVVIGRSNIVG P +
Sbjct: 120 VDGFHSENVGGLS-QGRDVL-TPCTPSGCLRLLEDTCGDLTGKHAVVIGRSNIVGKPMAA 177
Query: 251 LLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDV 310
LL + H +V++VH+ + + + + +ADIV+AA G L+ WLKPGAVV+DVG +D
Sbjct: 178 LLLQAHCSVTVVHSRSTDAKALCRQADIVVAAVGRPRLIDADWLKPGAVVIDVGINRID- 236
Query: 311 SVDPSCEYGY-RLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAK 362
+ G RL+GDV ++ A+ + S ITPVPGGVGPMT+A L+ NT+ +A+
Sbjct: 237 ------DDGRSRLVGDVDFDSALPVVSAITPVPGGVGPMTIAFLMKNTVTAAR 283
>gnl|CDD|184553 PRK14176, PRK14176, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 287
Score = 270 bits (692), Expect = 2e-89
Identities = 125/290 (43%), Positives = 185/290 (63%), Gaps = 12/290 (4%)
Query: 76 VIDGKSIAEEIRSGIDKEVRRMKKSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIK 135
+IDGK++A++I + + V R+K + G PGLA ILVG+ S+ YVR K KACE VGI+
Sbjct: 10 IIDGKALAKKIEAEVRSGVERLKSNRGITPGLATILVGDDPASKMYVRLKHKACERVGIR 69
Query: 136 SIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFH 195
+ T++E+L + + N+ ++GIL+QLPLP+HLD + ++A+ KD DGFH
Sbjct: 70 AEDQFLPADTTQEELLELIDSLNKRKDVHGILLQLPLPKHLDPQEAMEAIDPAKDADGFH 129
Query: 196 PLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRH 255
P N+G L M G E +PCTP G I L GV+I GKNAV++G SN+VG P + +L
Sbjct: 130 PYNMGKL-MIGDEG-LVPCTPHGVIRALEEYGVDIEGKNAVIVGHSNVVGKPMAAMLLNR 187
Query: 256 HATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPS 315
+ATVS+ H T + ++ T +ADI++ A GV +L++ +K GAV+ DVG + V
Sbjct: 188 NATVSVCHVFTDDLKKYTLDADILVVATGVKHLIKADMVKEGAVIFDVGITKEEDKV--- 244
Query: 316 CEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAY 365
GDV +E ++ AS+ITPVPGGVGP+T+AML+ + L A+++
Sbjct: 245 -------YGDVDFENVIKKASLITPVPGGVGPLTIAMLMKHVLMCAEKSL 287
>gnl|CDD|184552 PRK14175, PRK14175, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 286
Score = 269 bits (689), Expect = 4e-89
Identities = 136/295 (46%), Positives = 196/295 (66%), Gaps = 12/295 (4%)
Query: 74 ATVIDGKSIAEEIRSGIDKEVRRMKKSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVG 133
A ++DGK IA++ R G+ +V +K+ G P L+VILVG SQ+YVR+K KA E++G
Sbjct: 3 AKILDGKQIAKDYRQGLQDQVEALKEK-GFTPKLSVILVGNDGASQSYVRSKKKAAEKIG 61
Query: 134 IKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDG 193
+ S + + TE+EVLN L+ N D S++GILVQ+PLP+ + E KIL+A++ EKDVDG
Sbjct: 62 MISEIVHLEETATEEEVLNELNRLNNDDSVSGILVQVPLPKQVSEQKILEAINPEKDVDG 121
Query: 194 FHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQ 253
FHP+NIG L + E F+PCTP G +E+L + +++ GKNAVVIGRS+IVG P S LL
Sbjct: 122 FHPINIGKLYI--DEQTFVPCTPLGIMEILKHADIDLEGKNAVVIGRSHIVGQPVSKLLL 179
Query: 254 RHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVD 313
+ +A+V+I+H+ +K+ +AD++++A G LV +K GAV++DVG P
Sbjct: 180 QKNASVTILHSRSKDMASYLKDADVIVSAVGKPGLVTKDVVKEGAVIIDVGNTPD----- 234
Query: 314 PSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYGFT 368
E G +L GDV Y+ +A ITPVPGGVGP+T+ M+L+NTL + K G
Sbjct: 235 ---ENG-KLKGDVDYDAVKEIAGAITPVPGGVGPLTITMVLNNTLLAEKMRRGID 285
>gnl|CDD|184549 PRK14167, PRK14167, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 297
Score = 268 bits (687), Expect = 1e-88
Identities = 130/297 (43%), Positives = 181/297 (60%), Gaps = 11/297 (3%)
Query: 74 ATVIDGKSIAEEIRSGIDKEVRRMKKSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVG 133
+IDG ++A +IR + + ++ + G PGLA +L+ + S+TYV K + CEEVG
Sbjct: 2 TEIIDGNAVAAQIRDDLTDAIETLEDA-GVTPGLATVLMSDDPASETYVSMKQRDCEEVG 60
Query: 134 IKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDG 193
I++I E +E+ + + N D ++GILVQ+P+P H+D+ ++L + KDVDG
Sbjct: 61 IEAIDVEIDPDAPAEELYDTIDELNADEDVHGILVQMPVPDHVDDREVLRRIDPAKDVDG 120
Query: 194 FHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLP-TSLLL 252
FHP N+G L + F PCTP G +LL +GV+ G + VV+GRS+IVG P +LL+
Sbjct: 121 FHPENVGRLV--AGDARFKPCTPHGIQKLLAAAGVDTEGADVVVVGRSDIVGKPMANLLI 178
Query: 253 QRHH---ATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVD 309
Q+ ATV++ H+ T + T ADIV+AAAGV L+ GS L GA V+DVG
Sbjct: 179 QKADGGNATVTVCHSRTDDLAAKTRRADIVVAAAGVPELIDGSMLSEGATVIDVGIN--- 235
Query: 310 VSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYG 366
VD E GY L+GDV +E A AS ITPVPGGVGPMT AMLL NT+ +A G
Sbjct: 236 -RVDADTEKGYELVGDVEFESAKEKASAITPVPGGVGPMTRAMLLYNTVKAASLQEG 291
>gnl|CDD|237635 PRK14184, PRK14184, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 286
Score = 268 bits (686), Expect = 1e-88
Identities = 131/291 (45%), Positives = 172/291 (59%), Gaps = 16/291 (5%)
Query: 76 VIDGKSIAEEIRSGIDKEVRRMKKSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIK 135
++DGK+ A IR + EV + G+ PGLAVILVGE SQ YVRNK +ACE+ GI
Sbjct: 3 LLDGKATAATIREELKTEVAALTARHGRAPGLAVILVGEDPASQVYVRNKERACEDAGIV 62
Query: 136 SIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFH 195
S T++E+ + ++ N I+GIL+QLPLP+ LD + L+ + KDVDGFH
Sbjct: 63 SEAFRLPADTTQEELEDLIAELNARPDIDGILLQLPLPKGLDSQRCLELIDPAKDVDGFH 122
Query: 196 PLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRH 255
P N+G LA+ P F PCTP G + LL R G+ GK AVV+GRSNIVG P +L+L
Sbjct: 123 PENMGRLAL--GLPGFRPCTPAGVMTLLERYGLSPAGKKAVVVGRSNIVGKPLALMLGAP 180
Query: 256 ----HATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVS 311
+ATV++ H+ T + + EAD + A G V +KPGAVV+DVG D
Sbjct: 181 GKFANATVTVCHSRTPDLAEECREADFLFVAIGRPRFVTADMVKPGAVVVDVGINRTDDG 240
Query: 312 VDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAK 362
L+GD +E +AS ITPVPGGVGPMT+A LL NT+ S K
Sbjct: 241 ----------LVGDCDFEGLSDVASAITPVPGGVGPMTIAQLLVNTVQSWK 281
>gnl|CDD|172654 PRK14166, PRK14166, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 282
Score = 264 bits (676), Expect = 3e-87
Identities = 133/288 (46%), Positives = 194/288 (67%), Gaps = 11/288 (3%)
Query: 75 TVIDGKSIAEEIRSGIDKEVRRMKKSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGI 134
T++DGK+++ +I+ + ++ + +K S G LAVILVG+ SQTYV++K KACEE GI
Sbjct: 2 TLLDGKALSAKIKEELKEKNQFLK-SKGIESCLAVILVGDNPASQTYVKSKAKACEECGI 60
Query: 135 KSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGF 194
KS+V + T++E+L ++ N D S++GILVQLPLP H+ + IL+++ KDVDGF
Sbjct: 61 KSLVYHLNENTTQNELLALINTLNHDDSVHGILVQLPLPDHICKDLILESIISSKDVDGF 120
Query: 195 HPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQR 254
HP+N+G L + G E F+PCTP G ++LL +++ GK+AV+IG SNIVG P + +L
Sbjct: 121 HPINVGYLNL-GLESGFLPCTPLGVMKLLKAYEIDLEGKDAVIIGASNIVGRPMATMLLN 179
Query: 255 HHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDP 314
ATVS+ H TK+ T +AD++I AAG NL+R +K G +V+DVG ++
Sbjct: 180 AGATVSVCHIKTKDLSLYTRQADLIIVAAGCVNLLRSDMVKEGVIVVDVGINRLESG--- 236
Query: 315 SCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAK 362
+++GDV +EE + +S ITPVPGGVGPMT+AMLL NT+ SAK
Sbjct: 237 ------KIVGDVDFEEVSKKSSYITPVPGGVGPMTIAMLLENTVKSAK 278
>gnl|CDD|172675 PRK14187, PRK14187, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 294
Score = 263 bits (674), Expect = 1e-86
Identities = 121/288 (42%), Positives = 176/288 (61%), Gaps = 6/288 (2%)
Query: 74 ATVIDGKSIAEEIRSGIDKEVRRMKKSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVG 133
+IDGK IA +I + + +K+ P L VILVG+ SQ YVRNK + E +G
Sbjct: 2 TNIIDGKKIANDITEILATCIDDLKRQHNLFPCLIVILVGDDPASQLYVRNKQRKAEMLG 61
Query: 134 IKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDG 193
++S +E ++ ++ N D S++GILVQLP+P H+D+ I++ + EKDVDG
Sbjct: 62 LRSETILLPSTISESSLIEKINELNNDDSVHGILVQLPVPNHIDKNLIINTIDPEKDVDG 121
Query: 194 FHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQ 253
FH N+G L ++ IPCTPKGC+ L+ + G +AVVIGRSNIVG P + LL
Sbjct: 122 FHNENVGRLFTGQKKNCLIPCTPKGCLYLIKTITRNLSGSDAVVIGRSNIVGKPMACLLL 181
Query: 254 RHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVD 313
+ TV+ VH+ T++ S+ADI++AA G+ N V+ SW+K GA+V+DVG ++
Sbjct: 182 GENCTVTTVHSATRDLADYCSKADILVAAVGIPNFVKYSWIKKGAIVIDVGINSIEE--- 238
Query: 314 PSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSA 361
+ +GDV + E + AS ITPVPGGVGPMT+A L+ NT+ +A
Sbjct: 239 ---GGVKKFVGDVDFAEVKKKASAITPVPGGVGPMTIAFLMVNTVIAA 283
>gnl|CDD|133448 cd01080, NAD_bind_m-THF_DH_Cyclohyd, NADP binding domain of
methylene-tetrahydrofolate dehydrogenase/cyclohydrolase.
NADP binding domain of the Methylene-Tetrahydrofolate
Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase)
bifunctional enzyme. Tetrahydrofolate is a versatile
carrier of activated one-carbon units. The major
one-carbon folate donors are N-5 methyltetrahydrofolate,
N5,N10-m-THF, and N10-formayltetrahydrofolate. The
oxidation of metabolic intermediate m-THF to m-THF
requires the enzyme m-THF DH. In addition, most DHs also
have an associated cyclohydrolase activity which
catalyzes its hydrolysis to N10-formyltetrahydrofolate.
m-THF DH is typically found as part of a multifunctional
protein in eukaryotes. NADP-dependent m-THF DH in
mammals, birds and yeast are components of a
trifunctional enzyme with DH, cyclohydrolase, and
synthetase activities. Certain eukaryotic cells also
contain homodimeric bifunctional DH/cyclodrolase form.
In bacteria, monofucntional DH, as well as bifunctional
m-THF m-THF DHm-THF DHDH/cyclodrolase are found. In
addition, yeast (S. cerevisiae) also express an
monofunctional DH. This family contains the bifunctional
DH/cyclohydrolase. M-THF DH, like other amino acid
DH-like NAD(P)-binding domains, is a member of the
Rossmann fold superfamily which includes glutamate,
leucine, and phenylalanine DHs, m-THF DH,
methylene-tetrahydromethanopterin DH, m-THF
DH/cyclohydrolase, Shikimate DH-like proteins, malate
oxidoreductases, and glutamyl tRNA reductase. Amino acid
DHs catalyze the deamination of amino acids to keto
acids with NAD(P)+ as a cofactor. The NAD(P)-binding
Rossmann fold superfamily includes a wide variety of
protein families including NAD(P)- binding domains of
alcohol DHs, tyrosine-dependent oxidoreductases,
glyceraldehyde-3-phosphate DH, lactate/malate DHs,
formate/glycerate DHs, siroheme synthases,
6-phosphogluconate DH, amino acid DHs, repressor rex,
NAD-binding potassium channel domain, CoA-binding, and
ornithine cyclodeaminase-like domains.
Length = 168
Score = 249 bits (637), Expect = 1e-82
Identities = 98/175 (56%), Positives = 124/175 (70%), Gaps = 8/175 (4%)
Query: 188 EKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLP 247
EKDVDG HP+N+G LA+ P FIPCTP G +ELL R G+++ GK VV+GRSNIVG P
Sbjct: 2 EKDVDGLHPVNLGRLALGR--PGFIPCTPAGILELLKRYGIDLAGKKVVVVGRSNIVGKP 59
Query: 248 TSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCP 307
+ LL +ATV++ H+ TKN ++ T +ADIVI A G LV+G +KPGAVV+DVG
Sbjct: 60 LAALLLNRNATVTVCHSKTKNLKEHTKQADIVIVAVGKPGLVKGDMVKPGAVVIDVGINR 119
Query: 308 VDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAK 362
V D S G +L+GDV +E A AS ITPVPGGVGPMTVAML+ NT+++AK
Sbjct: 120 VP---DKS---GGKLVGDVDFESAKEKASAITPVPGGVGPMTVAMLMKNTVEAAK 168
>gnl|CDD|217267 pfam02882, THF_DHG_CYH_C, Tetrahydrofolate
dehydrogenase/cyclohydrolase, NAD(P)-binding domain.
Length = 160
Score = 247 bits (633), Expect = 2e-82
Identities = 91/170 (53%), Positives = 119/170 (70%), Gaps = 11/170 (6%)
Query: 195 HPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQR 254
HP+N+G L + EP F+PCTP+G +ELL R G+++ GKN VVIGRSNIVG P +LLL
Sbjct: 1 HPINLGRLVLG--EPGFVPCTPRGIMELLKRYGIDLAGKNVVVIGRSNIVGKPLALLLLN 58
Query: 255 HHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDP 314
+ATV++ H+ TK+ +IT EADIV+ A G L++ W+KPGAVV+DVG V+
Sbjct: 59 ANATVTVCHSKTKDLAEITREADIVVVAVGKPGLIKADWVKPGAVVIDVGINRVE----- 113
Query: 315 SCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRA 364
+L+GDV +E AS ITPVPGGVGPMTVAMLL NT+++AKR
Sbjct: 114 ----NGKLVGDVDFENVKEKASAITPVPGGVGPMTVAMLLQNTVEAAKRQ 159
>gnl|CDD|172660 PRK14172, PRK14172, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 278
Score = 248 bits (634), Expect = 8e-81
Identities = 105/287 (36%), Positives = 170/287 (59%), Gaps = 12/287 (4%)
Query: 76 VIDGKSIAEEIRSGIDKEVRRMKKSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIK 135
+I+GK +A +I+ I V K++ +P +A ILVG S Y+ N+ K +GI
Sbjct: 4 IINGKEVALKIKEEIKNFVEERKENGLSIPKIASILVGNDGGSIYYMNNQEKVANSLGID 63
Query: 136 SIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFH 195
+ + +E++++N + N+D++++GI++QLPLP+HLDE KI + + KD+D
Sbjct: 64 FKKIKLDESISEEDLINEIEELNKDNNVHGIMLQLPLPKHLDEKKITNKIDANKDIDCLT 123
Query: 196 PLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRH 255
+++G E F+PCTP I L+ ++I GK VVIGRSNIVG P + LL
Sbjct: 124 FISVGKFYKG--EKCFLPCTPNSVITLIKSLNIDIEGKEVVVIGRSNIVGKPVAQLLLNE 181
Query: 256 HATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPS 315
+ATV+I H+ TKN +++ +ADI++ A G + ++K GA+V+DVGT V+
Sbjct: 182 NATVTICHSKTKNLKEVCKKADILVVAIGRPKFIDEEYVKEGAIVIDVGTSSVN------ 235
Query: 316 CEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAK 362
++ GDV +++ + AS ITPVPGGVG +T +L+ N ++ K
Sbjct: 236 ----GKITGDVNFDKVIDKASYITPVPGGVGSLTTTLLIKNVCEALK 278
>gnl|CDD|172670 PRK14182, PRK14182, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 282
Score = 247 bits (631), Expect = 2e-80
Identities = 134/288 (46%), Positives = 182/288 (63%), Gaps = 11/288 (3%)
Query: 76 VIDGKSIAEEIRSGIDKEVRRMKKSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIK 135
+IDGK IA +++ + EVR + G GL V+ VG+ S YVR K K CEEVGI
Sbjct: 3 LIDGKQIAAKVKGEVATEVRALAAR-GVQTGLTVVRVGDDPASAIYVRGKRKDCEEVGIT 61
Query: 136 SIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFH 195
S+ T+ E+L ++ N D +++GILVQLPLP+H+DE +LDA+S KD DGFH
Sbjct: 62 SVEHHLPATTTQAELLALIARLNADPAVHGILVQLPLPKHVDERAVLDAISPAKDADGFH 121
Query: 196 PLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRH 255
P N+G L++ G + PCTP G + +L + V+ GK A+V+GRSNIVG P +++L
Sbjct: 122 PFNVGALSI-GIAGVPRPCTPAGVMRMLDEARVDPKGKRALVVGRSNIVGKPMAMMLLER 180
Query: 256 HATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPS 315
HATV+I H+ T + ADI++AA G A LV+G+W+K GAVV+DVG +
Sbjct: 181 HATVTIAHSRTADLAGEVGRADILVAAIGKAELVKGAWVKEGAVVIDVGMNRLADG---- 236
Query: 316 CEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKR 363
+L+GDV + A AS ITPVPGGVGPMT AMLL NT++ AKR
Sbjct: 237 -----KLVGDVEFAAAAARASAITPVPGGVGPMTRAMLLVNTVELAKR 279
>gnl|CDD|172666 PRK14178, PRK14178, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 279
Score = 245 bits (626), Expect = 1e-79
Identities = 129/291 (44%), Positives = 175/291 (60%), Gaps = 22/291 (7%)
Query: 75 TVIDGKSIAEEIRSGIDKEVRRMKKSI---GKVPGLAVILVGERRDSQTYVRNKIKACEE 131
++DGK+++E K + +K+ I G P LA ++VG+ SQ YVR K +ACE
Sbjct: 1 MILDGKAVSE-------KRLELLKEEIIESGLYPRLATVIVGDDPASQMYVRMKHRACER 53
Query: 132 VGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDV 191
VGI S+ E T VL + N+D INGILVQLPLP+ +D +++ A+ EKDV
Sbjct: 54 VGIGSVGIELPGDATTRTVLERIRRLNEDPDINGILVQLPLPKGVDTERVIAAILPEKDV 113
Query: 192 DGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLL 251
DGFHPLN+G L + G P F PCTP G + LL + I GK AVV+GRS VG P + L
Sbjct: 114 DGFHPLNLGRL-VSGL-PGFAPCTPNGIMTLLHEYKISIAGKRAVVVGRSIDVGRPMAAL 171
Query: 252 LQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVS 311
L ATV+I H+ T+N + +ADI+++AAG A + +KPGA V+DVG V+
Sbjct: 172 LLNADATVTICHSKTENLKAELRQADILVSAAGKAGFITPDMVKPGATVIDVGINQVN-- 229
Query: 312 VDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAK 362
+L GDV ++ +A ITPVPGGVGPMT+A L+ NT D+AK
Sbjct: 230 --------GKLCGDVDFDAVKEIAGAITPVPGGVGPMTIATLMENTFDAAK 272
>gnl|CDD|172659 PRK14171, PRK14171, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 288
Score = 241 bits (616), Expect = 4e-78
Identities = 119/290 (41%), Positives = 179/290 (61%), Gaps = 10/290 (3%)
Query: 76 VIDGKSIAEEIRSGIDKEVRRMKKSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIK 135
+IDGK++A EI + + E++ +K P LA++LVG+ S YV+NKIK ++GI
Sbjct: 4 IIDGKALANEILADLKLEIQELKSQTNASPKLAIVLVGDNPASIIYVKNKIKNAHKIGID 63
Query: 136 SIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFH 195
+++ + +++++ ++ N D+ I+GI+VQLPLP +D+ KIL AVS KD+DGFH
Sbjct: 64 TLLVNLSTTIHTNDLISKINELNLDNEISGIIVQLPLPSSIDKNKILSAVSPSKDIDGFH 123
Query: 196 PLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRH 255
PLN+G L G FIPCT GC+ ++ + + GKN V+IGRSNIVG P S LL +
Sbjct: 124 PLNVGYL-HSGISQGFIPCTALGCLAVIKKYEPNLTGKNVVIIGRSNIVGKPLSALLLKE 182
Query: 256 HATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPS 315
+ +V+I H+ T N ITS+ADIV+AA G + + P ++V+DVG +
Sbjct: 183 NCSVTICHSKTHNLSSITSKADIVVAAIGSPLKLTAEYFNPESIVIDVGINRIS------ 236
Query: 316 CEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAY 365
G +++GDV +E ITPVPGG+GPMT+A LL NT+ + K +
Sbjct: 237 ---GNKIIGDVDFENVKSKVKYITPVPGGIGPMTIAFLLKNTVKAFKDSL 283
>gnl|CDD|184551 PRK14173, PRK14173, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 287
Score = 237 bits (605), Expect = 2e-76
Identities = 123/294 (41%), Positives = 176/294 (59%), Gaps = 12/294 (4%)
Query: 73 TATVIDGKSIAEEIRSGIDKEVRRMKKSIGKVPGLAVILVGERRDSQTYVRNKIKACEEV 132
A + G AE + + E+R + VP L V+ +GE S +YVR K + + +
Sbjct: 2 AARELSGPPAAEAVYA----ELRARLAKLPFVPHLRVVRLGEDPASVSYVRLKDRQAKAL 57
Query: 133 GIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVD 192
G++S V + +++E+L ++ N D ++GILVQLPLP H+D ++L+A+ KDVD
Sbjct: 58 GLRSQVEVLPESTSQEELLELIARLNADPEVDGILVQLPLPPHIDFQRVLEAIDPLKDVD 117
Query: 193 GFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLL 252
GFHPLN+G L M G E L PCTP G + LL G+ + GK VV+GRSNIVG P + LL
Sbjct: 118 GFHPLNVGRLWM-GGEALE-PCTPAGVVRLLKHYGIPLAGKEVVVVGRSNIVGKPLAALL 175
Query: 253 QRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSV 312
R ATV++ H+ T++ +T AD+++ A G +L+ ++PGAVV+DVG V
Sbjct: 176 LREDATVTLAHSKTQDLPAVTRRADVLVVAVGRPHLITPEMVRPGAVVVDVGINRV---- 231
Query: 313 DPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYG 366
L GDV E A +A +TPVPGGVGPMTVAML++NT+ +A R G
Sbjct: 232 -GGNGGRDILTGDVHPEVA-EVAGALTPVPGGVGPMTVAMLMANTVIAALRRRG 283
>gnl|CDD|184561 PRK14192, PRK14192, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 283
Score = 236 bits (604), Expect = 3e-76
Identities = 115/294 (39%), Positives = 172/294 (58%), Gaps = 12/294 (4%)
Query: 73 TATVIDGKSIAEEIRSGIDKEVRRMKKSIGKVPGLAVILVGERRDSQTYVRNKIKACEEV 132
A V+DGK++A++I + V +K G+ P LA ILVG+ S TYVR K AC V
Sbjct: 2 MALVLDGKALAKQIEEELSVRVEALKAKTGRTPILATILVGDDPASATYVRMKGNACRRV 61
Query: 133 GIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVD 192
G+ S+ E T +++L + N + ++GIL+Q P+P +DE DA+SL KDVD
Sbjct: 62 GMDSLKVELPQETTTEQLLAKIEELNANPDVHGILLQHPVPAQIDERACFDAISLAKDVD 121
Query: 193 GFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLL 252
G L G +AM E + TP G + LL +E+ GK+AVV+GRS I+G P +++L
Sbjct: 122 GVTCLGFGRMAM--GEAAYGSATPAGIMRLLKAYNIELAGKHAVVVGRSAILGKPMAMML 179
Query: 253 QRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSV 312
+ATV+I H+ T+N ++ +ADI++ A G L++ W+K GAVV+D G P D
Sbjct: 180 LNANATVTICHSRTQNLPELVKQADIIVGAVGKPELIKKDWIKQGAVVVDAGFHPRDGGG 239
Query: 313 DPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYG 366
+GD+ + +AS TPVPGGVGPMT+ L+ T+++A++A G
Sbjct: 240 ----------VGDIELQGIEEIASAYTPVPGGVGPMTINTLIRQTVEAAEKALG 283
>gnl|CDD|172669 PRK14181, PRK14181, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 287
Score = 231 bits (590), Expect = 3e-74
Identities = 122/292 (41%), Positives = 175/292 (59%), Gaps = 13/292 (4%)
Query: 76 VIDGKSIAEEIRSGIDKEVRRMKKSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIK 135
++ G AE I + I + + + PGLAV+L+G S+ YV K+K ++G+
Sbjct: 2 LLKGAPAAEHILATIKENISASSTA----PGLAVVLIGNDPASEVYVGMKVKKATDLGMV 57
Query: 136 SIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFH 195
S T ++L + N D +I+GILVQLPLP+HLD IL A+S +KDVDG H
Sbjct: 58 SKAHRLPSDATLSDILKLIHRLNNDPNIHGILVQLPLPKHLDAQAILQAISPDKDVDGLH 117
Query: 196 PLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLP-TSLLLQR 254
P+N+G L + G FIPCTP G IELL + + G++ ++GRSNIVG P +LL+Q+
Sbjct: 118 PVNMGKLLL-GETDGFIPCTPAGIIELLKYYEIPLHGRHVAIVGRSNIVGKPLAALLMQK 176
Query: 255 H---HATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVS 311
H +ATV+++H+ ++N +I ADI+IAA GV ++ + AV++DVGT V +
Sbjct: 177 HPDTNATVTLLHSQSENLTEILKTADIIIAAIGVPLFIKEEMIAEKAVIVDVGTSRVPAA 236
Query: 312 VDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKR 363
GY L+GDV + + ITPVPGGVGPMTVAML+ NT +S R
Sbjct: 237 NPK----GYILVGDVDFNNVVPKCRAITPVPGGVGPMTVAMLMRNTWESYLR 284
>gnl|CDD|184550 PRK14169, PRK14169, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 282
Score = 230 bits (587), Expect = 9e-74
Identities = 118/290 (40%), Positives = 182/290 (62%), Gaps = 12/290 (4%)
Query: 74 ATVIDGKSIAEEIRSGIDKEVRRMKKSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVG 133
AT +DG++++++I + + + V ++ + P LAV+LVG S+ YVRNK + E++G
Sbjct: 1 ATRLDGRAVSKKILADLKQTVAKLAQQ-DVTPTLAVVLVGSDPASEVYVRNKQRRAEDIG 59
Query: 134 IKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDG 193
++S++ + T+ ++L ++ N D ++ ILVQLPLP LDE ++DA+ +KDVDG
Sbjct: 60 VRSLMFRLPEATTQADLLAKVAELNHDPDVDAILVQLPLPAGLDEQAVIDAIDPDKDVDG 119
Query: 194 FHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQ 253
F P+++G L EP + TP G + LL +++ GK V++GRSNIVG P + L+
Sbjct: 120 FSPVSVGRLWA--NEPTVVASTPYGIMALLDAYDIDVAGKRVVIVGRSNIVGRPLAGLMV 177
Query: 254 RHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVD 313
H ATV+I H+ T+N +Q+T EADI++ A GV + + +KPGAVV+DVG + D
Sbjct: 178 NHDATVTIAHSKTRNLKQLTKEADILVVAVGVPHFIGADAVKPGAVVIDVG---ISRGAD 234
Query: 314 PSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKR 363
L+GDV +AS ITPVPGGVGPMT+A L++ T+ AKR
Sbjct: 235 GK------LLGDVDEAAVAPIASAITPVPGGVGPMTIASLMAQTVTLAKR 278
>gnl|CDD|172668 PRK14180, PRK14180, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 282
Score = 229 bits (585), Expect = 2e-73
Identities = 119/288 (41%), Positives = 171/288 (59%), Gaps = 11/288 (3%)
Query: 75 TVIDGKSIAEEIRSGIDKEVRRMKKSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGI 134
+IDGKS++++++ + +V+ K P L I+VG S+TYV +K KAC +VGI
Sbjct: 2 ILIDGKSLSKDLKERLATQVQEYKHHTAITPKLVAIIVGNDPASKTYVASKEKACAQVGI 61
Query: 135 KSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGF 194
S V + TE E+L + N DSS++ ILVQLPLP H+++ ++ ++ EKDVDGF
Sbjct: 62 DSQVITLPEHTTESELLELIDQLNNDSSVHAILVQLPLPAHINKNNVIYSIKPEKDVDGF 121
Query: 195 HPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQR 254
HP N+G L +R ++ L CTPKG + +L G++ G AVV+G SN+VG P S LL
Sbjct: 122 HPTNVGRLQLRDKKCLE-SCTPKGIMTMLREYGIKTEGAYAVVVGASNVVGKPVSQLLLN 180
Query: 255 HHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDP 314
ATV+ H T + + T++ADI+I A G N + +K GAVV+DVG VD
Sbjct: 181 AKATVTTCHRFTTDLKSHTTKADILIVAVGKPNFITADMVKEGAVVIDVGINHVD----- 235
Query: 315 SCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAK 362
+++GDV + + ITPVPGGVGPMT+ LL NT A+
Sbjct: 236 -----GKIVGDVDFAAVKDKVAAITPVPGGVGPMTITELLYNTFQCAQ 278
>gnl|CDD|172665 PRK14177, PRK14177, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 284
Score = 226 bits (576), Expect = 4e-72
Identities = 118/290 (40%), Positives = 176/290 (60%), Gaps = 15/290 (5%)
Query: 76 VIDGKSIAEEIRSGIDKEVRRMKKSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIK 135
++DGK ++E+IR+ I + + K ++P LA ILVG S+TYV K+KAC +VG+
Sbjct: 5 LLDGKKLSEKIRNEIRETIEERKTKNKRIPKLATILVGNNPASETYVSMKVKACHKVGMG 64
Query: 136 SIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFH 195
S + + T +E+L + N D +++GIL+Q P+P +DE D ++LEKDVDG
Sbjct: 65 SEMIRLKEQTTTEELLGVIDKLNLDPNVDGILLQHPVPSQIDERAAFDRIALEKDVDGVT 124
Query: 196 PLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRH 255
L+ G L+M G E ++PCTP G + LL G+++ GKNAVV+GRS I+G P ++LL
Sbjct: 125 TLSFGKLSM-GVET-YLPCTPYGMVLLLKEYGIDVTGKNAVVVGRSPILGKPMAMLLTEM 182
Query: 256 HATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPS 315
+ATV++ H+ T+N I +ADI++ A G ++ W+ GAV+LD G P +V
Sbjct: 183 NATVTLCHSKTQNLPSIVRQADIIVGAVGKPEFIKADWISEGAVLLDAGYNPGNV----- 237
Query: 316 CEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAY 365
GD+ +A +S TPVPGGVGPMT+A+LL TL S K +
Sbjct: 238 --------GDIEISKAKDKSSFYTPVPGGVGPMTIAVLLLQTLYSFKEHF 279
>gnl|CDD|201431 pfam00763, THF_DHG_CYH, Tetrahydrofolate
dehydrogenase/cyclohydrolase, catalytic domain.
Length = 117
Score = 158 bits (402), Expect = 4e-48
Identities = 58/118 (49%), Positives = 85/118 (72%), Gaps = 1/118 (0%)
Query: 75 TVIDGKSIAEEIRSGIDKEVRRMKKSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGI 134
++DGK++A++I+ + +EV ++K+ G P LAVILVG+ SQ YVR+K KA EE+GI
Sbjct: 1 KILDGKALAKKIKEELKEEVAKLKEK-GITPKLAVILVGDDPASQVYVRSKRKAAEELGI 59
Query: 135 KSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVD 192
+S + + TE+E+L + N D S++GILVQLPLP+H+DE KIL+A+ EKDVD
Sbjct: 60 ESELIRLPEDITEEELLALIEKLNADPSVHGILVQLPLPKHIDENKILNAIDPEKDVD 117
>gnl|CDD|133451 cd05212, NAD_bind_m-THF_DH_Cyclohyd_like, NAD(P) binding domain of
methylene-tetrahydrofolate dehydrogenase and
methylene-tetrahydrofolate dehydrogenase/cyclohydrolase.
NAD(P) binding domains of methylene-tetrahydrofolate
dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase
bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is
a versatile carrier of activated one-carbon units. The
major one-carbon folate donors are N-5
methyltetrahydrofolate, N5,N10-m-THF, and
N10-formayltetrahydrofolate. The oxidation of metabolic
intermediate m-THF to m-THF requires the enzyme m-THF
DH. In addition, most DHs also have an associated
cyclohydrolase activity which catalyzes its hydrolysis
to N10-formyltetrahydrofolate. m-THF DH is typically
found as part of a multifunctional protein in
eukaryotes. NADP-dependent m-THF DH in mammals, birds
and yeast are components of a trifunctional enzyme with
DH, cyclohydrolase, and synthetase activities. Certain
eukaryotic cells also contain homodimeric bifunctional
DH/cyclodrolase form. In bacteria, mono-functional DH,
as well as bifunctional DH/cyclodrolase are found. In
addition, yeast (S. cerevisiae) also express a
monofunctional DH. M-THF DH, like other amino acid
DH-like NAD(P)-binding domains, is a member of the
Rossmann fold superfamily which includes glutamate,
leucine, and phenylalanine DHs, m-THF DH,
methylene-tetrahydromethanopterin DH, m-THF
DH/cyclohydrolase, Shikimate DH-like proteins, malate
oxidoreductases, and glutamyl tRNA reductase. Amino acid
DHs catalyze the deamination of amino acids to keto
acids with NAD(P)+ as a cofactor. The NAD(P)-binding
Rossmann fold superfamily includes a wide variety of
protein families including NAD(P)- binding domains of
alcohol DHs, tyrosine-dependent oxidoreductases,
glyceraldehyde-3-phosphate DH, lactate/malate DHs,
formate/glycerate DHs, siroheme synthases,
6-phosphogluconate DH, amino acid DHs, repressor rex,
NAD-binding potassium channel domain, CoA-binding, and
ornithine cyclodeaminase-like domains. These domains
have an alpha-beta-alpha configuration. NAD binding
involves numerous hydrogen and van der Waals contacts.
Length = 140
Score = 104 bits (262), Expect = 2e-27
Identities = 51/158 (32%), Positives = 72/158 (45%), Gaps = 25/158 (15%)
Query: 212 IPCTPKGC-------IELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHA 264
PCTP ELL + GV + GK +V+GRS IVG P LLQR ATV
Sbjct: 1 GPCTPLFVSPVAKAVKELLNKEGVRLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDW 60
Query: 265 LTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMG 324
T + +AD+V+ + V W+KPGA V++ S
Sbjct: 61 KTIQLQSKVHDADVVVVGSPKPEKVPTEWIKPGATVINC-----------SPTK------ 103
Query: 325 DVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAK 362
+ ++ AS+ P+ GGVG +TVAM + N + S +
Sbjct: 104 -LSGDDVKESASLYVPMTGGVGKLTVAMRMQNMVRSVR 140
>gnl|CDD|133447 cd01079, NAD_bind_m-THF_DH, NAD binding domain of
methylene-tetrahydrofolate dehydrogenase. The
NAD-binding domain of methylene-tetrahydrofolate
dehydrogenase (m-THF DH). M-THF is a versatile carrier
of activated one-carbon units. The major one-carbon
folate donors are N-5 methyltetrahydrofolate,
N5,N10-m-THF, and N10-formayltetrahydrofolate. The
oxidation of metabolic intermediate m-THF to m-THF
requires the enzyme m-THF DH. M-THF DH is a component of
an unusual monofunctional enzyme; in eukaryotes, m-THF
DH is typically found as part of a multifunctional
protein. NADP-dependent m-THF DHs in mammals, birds and
yeast are components of a trifunctional enzyme with DH,
cyclohydrolase, and synthetase activities. Certain
eukaryotic cells also contain homodimeric bifunctional
DH/cyclodrolase form. In bacteria, monofunctional DH, as
well as bifunctional DH/cyclodrolase are found. In
addition, yeast (S. cerevisiae) also express an
monofunctional DH. This family contains only the
monofunctional DHs from S. cerevisiae and certain
bacteria. M-THF DH, like other amino acid DH-like
NAD(P)-binding domains, is a member of the Rossmann fold
superfamily which includes glutamate, leucine, and
phenylalanine DHs, m-THF DH,
methylene-tetrahydromethanopterin DH, m-THF
DH/cyclohydrolase, Shikimate DH-like proteins, malate
oxidoreductases, and glutamyl tRNA reductase. Amino acid
DHs catalyze the deamination of amino acids to keto
acids with NAD(P)+ as a cofactor. The NAD(P)-binding
Rossmann fold superfamily includes a wide variety of
protein families including NAD(P)- binding domains of
alcohol DHs, tyrosine-dependent oxidoreductases,
glyceraldehyde-3-phosphate DH, lactate/malate DHs,
formate/glycerate DHs, siroheme synthases,
6-phosphogluconate DH, amino acid DHs, repressor rex,
NAD-binding potassium channel domain, CoA-binding, and
ornithine cyclodeaminase-like domains. These domains
have an alpha-beta-alpha configuration. NAD binding
involves numerous hydrogen and van der Waals contacts.
Length = 197
Score = 66.3 bits (162), Expect = 8e-13
Identities = 50/210 (23%), Positives = 72/210 (34%), Gaps = 59/210 (28%)
Query: 187 LEKDVDGFHPLNIGNLAMRGR----EPLF---IPCTPKGCIELL---------IRSGVEI 230
KDV+G I NL R E +PCTP +++L + G +
Sbjct: 1 PHKDVEGLSHKYIFNLYHNIRFLDPENRKKSILPCTPLAIVKILEFLGIYNKILPYGNRL 60
Query: 231 MGKNAVVIGRSNIVGLPTSLLLQRHHATV-SI--------------------VHALTKNP 269
GK +I RS +VG P + LL A V S+ V
Sbjct: 61 YGKTITIINRSEVVGRPLAALLANDGARVYSVDINGIQVFTRGESIRHEKHHVTDEEAMT 120
Query: 270 EQITSEADIVIAAAGVANL-VRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCY 328
S++D+VI N V LK GA+ ++ +
Sbjct: 121 LDCLSQSDVVITGVPSPNYKVPTELLKDGAICINFASIKNFE------------------ 162
Query: 329 EEAMRLASVITPVPGGVGPMTVAMLLSNTL 358
AS+ P +G +T+AMLL N L
Sbjct: 163 PSVKEKASIYVPS---IGKVTIAMLLRNLL 189
>gnl|CDD|225280 COG2423, COG2423, Predicted ornithine cyclodeaminase, mu-crystallin
homolog [Amino acid transport and metabolism].
Length = 330
Score = 34.2 bits (79), Expect = 0.093
Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 268 NPEQITSEADIVIAA-AGVANLVRGSWLKPGAVVLDVGT 305
+ E+ ADIV+ A +++ WLKPG + +G
Sbjct: 188 SAEEAVEGADIVVTATPSTEPVLKAEWLKPGTHINAIGA 226
>gnl|CDD|224949 COG2038, CobT, NaMN:DMB phosphoribosyltransferase [Coenzyme
metabolism].
Length = 347
Score = 31.9 bits (73), Expect = 0.44
Identities = 24/98 (24%), Positives = 37/98 (37%), Gaps = 8/98 (8%)
Query: 269 PEQITSEADIVIAAAGVANLV--RGSWLKPGAVVLDVGTCPV-DVSVDPS-----CEYGY 320
PE +T+ A I AA G A V G+ KP + + P D++ P+ E
Sbjct: 80 PEGVTTPAVINRAAGGAAINVLAAGAGAKPKVPDIGLDGRPTGDIAEGPAMSEEEAEAAI 139
Query: 321 RLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTL 358
++ E A ++ G G T A + L
Sbjct: 140 EAGKELGKELAKNGDDLLIIGESGPGNTTTAAAVLAAL 177
>gnl|CDD|180421 PRK06141, PRK06141, ornithine cyclodeaminase; Validated.
Length = 314
Score = 31.8 bits (73), Expect = 0.50
Identities = 14/30 (46%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 270 EQITSEADIVIAAAGVAN-LVRGSWLKPGA 298
E +ADI+ A LVRG WLKPG
Sbjct: 184 EAAVRQADIISCATLSTEPLVRGEWLKPGT 213
>gnl|CDD|235738 PRK06199, PRK06199, ornithine cyclodeaminase; Validated.
Length = 379
Score = 32.0 bits (73), Expect = 0.51
Identities = 22/97 (22%), Positives = 38/97 (39%), Gaps = 14/97 (14%)
Query: 258 TVSIVHALTKNPEQITSEADIVIAAAGVAN-------LVRGSWLKPGAVVLDVGTCPVDV 310
V +V ++ E++ +DIV V+ W+KPGA +L C +D
Sbjct: 210 NVEVVDSI----EEVVRGSDIVTYCNSGETGDPSTYPYVKREWVKPGAFLLMPAACRIDE 265
Query: 311 SV---DPSCEYGYRLMGDVCYEEAMRLASVITPVPGG 344
+ D + + +EE + A + PV G
Sbjct: 266 GMEQGDVRKVVDNTGLYEAWFEEVPKPAHNLIPVIGV 302
>gnl|CDD|217026 pfam02423, OCD_Mu_crystall, Ornithine cyclodeaminase/mu-crystallin
family. This family contains the bacterial Ornithine
cyclodeaminase enzyme EC:4.3.1.12, which catalyzes the
deamination of ornithine to proline. This family also
contains mu-Crystallin the major component of the eye
lens in several Australian marsupials, mRNA for this
protein has also been found in human retina.
Length = 313
Score = 31.6 bits (72), Expect = 0.55
Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 7/66 (10%)
Query: 267 KNPEQITSEADIVIAA--AGVANLVRGSWLKPGAVVLDVGT-CPVDVSVDPSCEYGYRLM 323
+ E+ ADIV+ +++ W+KPG + VG CP +DP L
Sbjct: 185 TSAEEAVEGADIVVTVTPDKEFPILKAEWVKPGVHINAVGADCPGKTELDPDI----LLR 240
Query: 324 GDVCYE 329
D+ +
Sbjct: 241 ADIFVD 246
>gnl|CDD|234703 PRK00258, aroE, shikimate 5-dehydrogenase; Reviewed.
Length = 278
Score = 31.7 bits (73), Expect = 0.56
Identities = 26/113 (23%), Positives = 47/113 (41%), Gaps = 36/113 (31%)
Query: 222 LLIRSGVEIMGKNAVVIG-----RSNIVGLPTSLLLQRHHATVSIV-------------- 262
L R GV++ GK +++G R+ I+ LL A ++IV
Sbjct: 113 LEERLGVDLKGKRILILGAGGAARAVILP-----LLDLGVAEITIVNRTVERAEELAKLF 167
Query: 263 -----HALTKNPEQITSEADIVIAA--AGVANLVRG-----SWLKPGAVVLDV 303
L ++ ++ D++I A AG++ + S L+PG +V D+
Sbjct: 168 GALGKAELDLELQEELADFDLIINATSAGMSGELPLPPLPLSLLRPGTIVYDM 220
>gnl|CDD|240630 cd05305, L-AlaDH, Alanine dehydrogenase NAD-binding and catalytic
domains. Alanine dehydrogenase (L-AlaDH) catalyzes the
NAD-dependent conversion of pyruvate to L-alanine via
reductive amination. Like formate dehydrogenase and
related enzymes, L-AlaDH is comprised of 2 domains
connected by a long alpha helical stretch, each
resembling a Rossmann fold NAD-binding domain. The
NAD-binding domain is inserted within the linear
sequence of the more divergent catalytic domain. Ligand
binding and active site residues are found in the cleft
between the subdomains. L-AlaDH is typically hexameric
and is critical in carbon and nitrogen metabolism in
micro-organisms.
Length = 359
Score = 30.8 bits (71), Expect = 1.1
Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 26/67 (38%)
Query: 262 VHALTKNP---EQITSEADIVIAAAGVANLVRG------------SWLKPGAVVLDVGTC 306
V L NP E+ EAD+VI A L+ G +KPG+V+
Sbjct: 215 VTTLYSNPANLEEALKEADLVIGAV----LIPGAKAPKLVTEEMVKTMKPGSVI------ 264
Query: 307 PVDVSVD 313
VDV++D
Sbjct: 265 -VDVAID 270
>gnl|CDD|214966 smart01002, AlaDh_PNT_C, Alanine dehydrogenase/PNT, C-terminal
domain. Alanine dehydrogenase catalyzes the
NAD-dependent reversible reductive amination of pyruvate
into alanine.
Length = 149
Score = 29.8 bits (68), Expect = 1.1
Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 21/60 (35%)
Query: 270 EQITSEADIVIAAAGV----------ANLVRGSWLKPGAVVLDVGTCPVDVSVDP--SCE 317
E+ EAD+VI A + +V+ +KPG+V+ VDV+ D E
Sbjct: 78 EEAVKEADLVIGAVLIPGAKAPKLVTREMVKS--MKPGSVI-------VDVAADQGGCIE 128
>gnl|CDD|236034 PRK07502, PRK07502, cyclohexadienyl dehydrogenase; Validated.
Length = 307
Score = 29.9 bits (68), Expect = 2.1
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 7/56 (12%)
Query: 261 IVHALTKNPEQITSEADIVI------AAAGVANLVRGSWLKPGAVVLDVGTCPVDV 310
+ +T + + AD+VI A+ VA + LKPGA+V DVG+ V
Sbjct: 52 LGDRVTTSAAEAVKGADLVILCVPVGASGAVAAEI-APHLKPGAIVTDVGSVKASV 106
>gnl|CDD|180402 PRK06106, PRK06106, nicotinate-nucleotide pyrophosphorylase;
Provisional.
Length = 281
Score = 29.6 bits (67), Expect = 2.7
Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 3/48 (6%)
Query: 259 VSIV--HALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVG 304
V+IV A+T+ +IT E IAA+GV +L+ WL A VLD+G
Sbjct: 232 VAIVAGRAITEASGRITPETAPAIAASGV-DLISVGWLTHSAPVLDIG 278
>gnl|CDD|223227 COG0149, TpiA, Triosephosphate isomerase [Carbohydrate transport
and metabolism].
Length = 251
Score = 29.1 bits (66), Expect = 3.1
Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 12/63 (19%)
Query: 106 GLAVILVG--ERR----DSQTYVRNKIKACEEVGIKSIV------TEFADGCTEDEVLNA 153
G +L+G ERR ++ + K+KA +E G+ I+ E G T + +
Sbjct: 88 GAKYVLIGHSERRLYFGETDELIAKKVKAAKEAGLTPILCVGETLEEREAGKTLEVLKRQ 147
Query: 154 LSN 156
L+
Sbjct: 148 LAA 150
>gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein;
Provisional.
Length = 623
Score = 29.1 bits (65), Expect = 4.0
Identities = 26/86 (30%), Positives = 37/86 (43%), Gaps = 28/86 (32%)
Query: 42 PLITLDLPEIWTPPNSRDCNPLPQRNCSNLQTATVIDGKSIAE--------EIRSGIDKE 93
PLI+L+ P PP +D TV+DG+ I + +RSG+
Sbjct: 288 PLISLEHPAKQEPPIEQD---------------TVVDGEPILQVRNLVTRFPLRSGLLNR 332
Query: 94 VRRMKKSIGKV-----PGLAVILVGE 114
V R ++ KV PG + LVGE
Sbjct: 333 VTREVHAVEKVSFDLWPGETLSLVGE 358
>gnl|CDD|223758 COG0686, Ald, Alanine dehydrogenase [Amino acid transport and
metabolism].
Length = 371
Score = 29.2 bits (66), Expect = 4.0
Identities = 32/109 (29%), Positives = 43/109 (39%), Gaps = 22/109 (20%)
Query: 262 VHALTKNPEQI---TSEADIVIAA-----AGVANLVRGSW---LKPGAVVLDVGTCPVDV 310
VH L P I +AD+VI A A LV +KPG+V+ VDV
Sbjct: 215 VHTLYSTPSNIEEAVKKADLVIGAVLIPGAKAPKLVTREMVKQMKPGSVI-------VDV 267
Query: 311 SVDP-SCEYGYRL--MGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSN 356
++D C D YE + + +PG V P T L+N
Sbjct: 268 AIDQGGCFETSHPTTHDDPTYEVDGVVHYGVANMPGAV-PRTSTQALTN 315
>gnl|CDD|238190 cd00311, TIM, Triosephosphate isomerase (TIM) is a glycolytic
enzyme that catalyzes the interconversion of
dihydroxyacetone phosphate and
D-glyceraldehyde-3-phosphate. The reaction is very
efficient and requires neither cofactors nor metal ions.
TIM, usually homodimeric, but in some organisms
tetrameric, is ubiqitous and conserved in function
across eukaryotes, bacteria and archaea.
Length = 242
Score = 28.7 bits (65), Expect = 4.5
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 12/56 (21%)
Query: 111 LVG--ERR----DSQTYVRNKIKACEEVGIKSIV------TEFADGCTEDEVLNAL 154
++G ERR ++ V K+KA E G+ I+ E G TE+ V L
Sbjct: 89 IIGHSERRQYFGETDEDVAKKVKAALEAGLTPILCVGETLEEREAGKTEEVVAAQL 144
>gnl|CDD|227403 COG5071, RPN5, 26S proteasome regulatory complex component
[Posttranslational modification, protein turnover,
chaperones].
Length = 439
Score = 28.8 bits (64), Expect = 4.6
Identities = 12/53 (22%), Positives = 23/53 (43%)
Query: 75 TVIDGKSIAEEIRSGIDKEVRRMKKSIGKVPGLAVILVGERRDSQTYVRNKIK 127
TV +GK E R+ + + + ++K+ G + IL E ++ K
Sbjct: 118 TVTEGKIFVEVERARLTQLLSQIKEEQGDIKSAQDILCNEPVETYGSFDLSEK 170
>gnl|CDD|217651 pfam03635, Vps35, Vacuolar protein sorting-associated protein 35.
Vacuolar protein sorting-associated protein (Vps) 35 is
one of around 50 proteins involved in protein
trafficking. In particular, Vps35 assembles into a
retromer complex with at least four other proteins Vps5,
Vps17, Vps26 and Vps29. Vps35 contains a central region
of weaker sequence similarity, thought to indicate the
presence of at least three domains.
Length = 741
Score = 29.1 bits (66), Expect = 5.0
Identities = 20/85 (23%), Positives = 30/85 (35%), Gaps = 24/85 (28%)
Query: 110 ILVG---------ERRDSQTYVR-------NKIKACEEVGIK-----SIVTEFADGC--- 145
ILVG E D + Y ++ C +V + I+ F D
Sbjct: 204 ILVGSNLVRLSQLEGVDLEMYKETILPRILEQVVNCRDVLAQEYLLEVIIQVFPDEFHLA 263
Query: 146 TEDEVLNALSNYNQDSSINGILVQL 170
T D +L+A N + IL+ L
Sbjct: 264 TLDTLLSACLQLNPGVDVKKILITL 288
>gnl|CDD|237674 PRK14326, PRK14326, (dimethylallyl)adenosine tRNA
methylthiotransferase; Provisional.
Length = 502
Score = 28.9 bits (65), Expect = 5.0
Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Query: 236 VVIGRSNIVGLPTSLLLQRH--HATVSIVHALTKNPEQITSEADIVIAA 282
VV G NI LPT L RH A V I +L + P + + + AA
Sbjct: 111 VVFGTHNIGSLPTLLERARHNKEAQVEIAESLEQFPSTLPARRESAYAA 159
>gnl|CDD|224995 COG2084, MmsB, 3-hydroxyisobutyrate dehydrogenase and related
beta-hydroxyacid dehydrogenases [Lipid metabolism].
Length = 286
Score = 28.7 bits (65), Expect = 5.1
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 9/54 (16%)
Query: 268 NPEQITSEADIVI----AAAGVANLVRG-----SWLKPGAVVLDVGTCPVDVSV 312
+P + +EAD+VI A V ++ G LKPGA+V+D+ T + +
Sbjct: 50 SPAEAAAEADVVITMLPDDAAVRAVLFGENGLLEGLKPGAIVIDMSTISPETAR 103
>gnl|CDD|184529 PRK14133, PRK14133, DNA polymerase IV; Provisional.
Length = 347
Score = 28.5 bits (64), Expect = 5.7
Identities = 17/44 (38%), Positives = 19/44 (43%), Gaps = 7/44 (15%)
Query: 63 LPQRNCSNLQTATVIDGKSIAEEIRSGIDK---EVRRMKKSIGK 103
L + G I E IR GID EV R +KSIGK
Sbjct: 203 LSREFLIEYFGKF---GVEIYERIR-GIDYREVEVSRERKSIGK 242
>gnl|CDD|131900 TIGR02853, spore_dpaA, dipicolinic acid synthetase, A subunit.
This predicted Rossman fold-containing protein is the A
subunit of dipicolinic acid synthetase as found in most,
though not all, endospore-forming low-GC Gram-positive
bacteria; it is absent in Clostridium. The B subunit is
represented by TIGR02852. This protein is also known as
SpoVFA [Cellular processes, Sporulation and
germination].
Length = 287
Score = 28.5 bits (64), Expect = 5.9
Identities = 39/169 (23%), Positives = 64/169 (37%), Gaps = 40/169 (23%)
Query: 212 IPCTPKGCIELLIRS-GVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSI--------- 261
IP T +G I + I I G N +V+G G+ + A V +
Sbjct: 131 IP-TAEGAIMMAIEHTDFTIHGSNVMVLGFGRT-GMTIARTFSALGARVFVGARSSADLA 188
Query: 262 ------VHALT-KNPEQITSEADIVI----AAAGVANLVRGSWLKPGAVVLDVGTCPVDV 310
+ E+ +E DIVI A A+++ S L AV++D+ + P
Sbjct: 189 RITEMGLIPFPLNKLEEKVAEIDIVINTIPALVLTADVL--SKLPKHAVIIDLASKPGGT 246
Query: 311 SVDPSCEYGYRLMGDVCYEEAMRLASVITP-VPGGVGPMTVAMLLSNTL 358
D Y + + +++ P +PG V P T +L+N L
Sbjct: 247 --------------DFEYAKKRGIKALLAPGLPGIVAPKTAGKILANVL 281
>gnl|CDD|226581 COG4096, HsdR, Type I site-specific restriction-modification
system, R (restriction) subunit and related helicases
[Defense mechanisms].
Length = 875
Score = 28.6 bits (64), Expect = 6.0
Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 5/56 (8%)
Query: 68 CSNLQTATVIDGKSIAEEIRSGIDKEVRRMKKSIGKVPGLAVILVGERRDSQTYVR 123
LQ ++DGK E I I VRR+K + V L + R Q+ +
Sbjct: 667 ILRLQYL-LLDGKLATESIIFQIKDYVRRLKTLLPAVATLDDFI----RKWQSAEQ 717
>gnl|CDD|237588 PRK14022, PRK14022,
UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase;
Provisional.
Length = 481
Score = 28.5 bits (64), Expect = 6.0
Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 9/49 (18%)
Query: 78 DGKSIAEEIRSGIDKEVR---------RMKKSIGKVPGLAVILVGERRD 117
D K I +EI S I V + SI + PG AVI+ G+ D
Sbjct: 409 DPKMITQEIASHITHPVEIIDDRAEAIKHAMSITEGPGDAVIIAGKGAD 457
>gnl|CDD|218700 pfam05697, Trigger_N, Bacterial trigger factor protein (TF). In
the E. coli cytosol, a fraction of the newly synthesised
proteins requires the activity of molecular chaperones
for folding to the native state. The major chaperones
implicated in this folding process are the
ribosome-associated Trigger Factor (TF), and the DnaK
and GroEL chaperones with their respective
co-chaperones. Trigger Factor is an ATP-independent
chaperone and displays chaperone and
peptidyl-prolyl-cis-trans-isomerase (PPIase) activities
in vitro. It is composed of at least three domains, an
N-terminal domain which mediates association with the
large ribosomal subunit, a central substrate binding and
PPIase domain with homology to FKBP proteins, and a
C-terminal domain of unknown function. The positioning
of TF at the peptide exit channel, together with its
ability to interact with nascent chains as short as 57
residues renders TF a prime candidate for being the
first chaperone that binds to the nascent polypeptide
chains. This family represents the N-terminal region of
the protein.
Length = 145
Score = 27.5 bits (62), Expect = 7.0
Identities = 11/35 (31%), Positives = 19/35 (54%), Gaps = 8/35 (22%)
Query: 83 AEEIRSGIDKEVRRMKKSI-------GKVPGLAVI 110
AEE+ +DK ++ + K + GKVP +V+
Sbjct: 21 AEEVEEAVDKALKELAKKVKIPGFRKGKVP-RSVV 54
>gnl|CDD|178689 PLN03144, PLN03144, Carbon catabolite repressor protein 4 homolog;
Provisional.
Length = 606
Score = 28.2 bits (63), Expect = 7.9
Identities = 22/59 (37%), Positives = 28/59 (47%), Gaps = 12/59 (20%)
Query: 262 VHALTKNPEQITSEADIVIAAAGVANLVRGS----WLKPGAVVLDVGTCPV--DVSVDP 314
VH L K E+I + ADI + G N V GS L G V P+ D++VDP
Sbjct: 440 VHTLLKGLEKIAASADIPMLVCGDFNSVPGSAPHCLLATGKV------DPLHPDLAVDP 492
>gnl|CDD|116052 pfam07431, DUF1512, Protein of unknown function (DUF1512). This
family consists of several archaeal proteins of around
370 residues in length. The function of this family is
unknown.
Length = 356
Score = 28.1 bits (63), Expect = 8.4
Identities = 9/29 (31%), Positives = 12/29 (41%)
Query: 328 YEEAMRLASVITPVPGGVGPMTVAMLLSN 356
Y EA P+ GP+ A L+ N
Sbjct: 169 YMEACNAFLKGVPIGDSAGPLVAARLIGN 197
>gnl|CDD|223469 COG0392, COG0392, Predicted integral membrane protein [Function
unknown].
Length = 322
Score = 28.1 bits (63), Expect = 8.5
Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 334 LASVITPVPGGVGPMTVAM--LLSNTLDSAKRA 364
LA VI+P PGG+G + LLS A A
Sbjct: 253 LAGVISPTPGGLGVVEAVFIALLSALGIPASTA 285
>gnl|CDD|173858 cd08493, PBP2_DppA_like, The substrate-binding component of an
ABC-type dipeptide import system contains the type 2
periplasmic binding fold. This family represents the
substrate-binding domain of an ATP-binding cassette
(ABC)-type dipeptide import system. The DppA binds
dipeptides and some tripeptides and is involved in
chemotaxis toward dipeptides, whereas the OppA binds
peptides of a wide range of lengths (2-35 amino acid
residues) and plays a role in recycling of cell wall
peptides, which precludes any involvement in chemotaxis.
Most of other periplasmic binding proteins are
comprised of only two globular subdomains corresponding
to domains I and III of the dipeptide/oligopeptide
binding proteins. The structural topology of these
domains is most similar to that of the type 2
periplasmic binding proteins (PBP2), which are
responsible for the uptake of a variety of substrates
such as phosphate, sulfate, polysaccharides,
lysine/arginine/ornithine, and histidine. The PBP2 bind
their ligand in the cleft between these domains in a
manner resembling a Venus flytrap. After binding their
specific ligand with high affinity, they can interact
with a cognate membrane transport complex comprised of
two integral membrane domains and two cytoplasmically
located ATPase domains. This interaction triggers the
ligand translocation across the cytoplasmic membrane
energized by ATP hydrolysis. Besides transport
proteins, the PBP2 superfamily includes the
ligand-binding domains from ionotropic glutamate
receptors, LysR-type transcriptional regulators, and
unorthodox sensor proteins involved in signal
transduction.
Length = 482
Score = 27.9 bits (63), Expect = 8.6
Identities = 14/51 (27%), Positives = 20/51 (39%), Gaps = 20/51 (39%)
Query: 50 EIWTPPNSRDCNPLPQRNCSNLQTATVIDGKSIAEEIRS-----GIDKEVR 95
+W PP SR NP + K +AE I++ GI E+
Sbjct: 338 TLWYPPVSRPYNP---------------NPKKMAELIQADLAKVGIKVEIV 373
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.136 0.404
Gapped
Lambda K H
0.267 0.0831 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 18,967,578
Number of extensions: 1859136
Number of successful extensions: 2170
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2073
Number of HSP's successfully gapped: 84
Length of query: 368
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 270
Effective length of database: 6,590,910
Effective search space: 1779545700
Effective search space used: 1779545700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (26.7 bits)