RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 017679
(368 letters)
>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase,
hydrolase, leishmaniasis; 2.70A {Leishmania major}
Length = 300
Score = 478 bits (1234), Expect = e-171
Identities = 148/297 (49%), Positives = 201/297 (67%), Gaps = 6/297 (2%)
Query: 73 TATVIDGKSIAEEIRSGIDKEVRRMKKSI-GKVPGLAVILVGERRDSQTYVRNKIKACEE 131
+A +IDGK+IA IRS + +V +++ G+VPGLA I+VG+R DS+ YV+ K KA E
Sbjct: 5 SAQIIDGKAIAAAIRSELKDKVAALRELYGGRVPGLASIIVGQRMDSKKYVQLKHKAAAE 64
Query: 132 VGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDV 191
VG+ S E + +++ + + N D + +GI+VQLPLP+HL+E + ++ + KD
Sbjct: 65 VGMASFNVELPEDISQEVLEVNVEKLNNDPNCHGIIVQLPLPKHLNENRAIEKIHPHKDA 124
Query: 192 DGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLL 251
D P+N+G L +GREP F PCT KG I LL R G+E+ GK AVV+GRSNIVG P + L
Sbjct: 125 DALLPVNVGLLHYKGREPPFTPCTAKGVIVLLKRCGIEMAGKRAVVLGRSNIVGAPVAAL 184
Query: 252 LQRHHATVSIVHAL--TKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVD 309
L + +ATV+IVH+ T++ ADIVIAA G V+G W+K GA V+DVGT PV
Sbjct: 185 LMKENATVTIVHSGTSTEDMIDYLRTADIVIAAMGQPGYVKGEWIKEGAAVVDVGTTPVP 244
Query: 310 VSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYG 366
DPS + GYRL+GDVC+EEA A+ I+PVPGGVGPMT+AMLL NTL++ K A G
Sbjct: 245 ---DPSRKDGYRLVGDVCFEEAAARAAWISPVPGGVGPMTIAMLLENTLEAFKAALG 298
>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate
cyclohydrolase...; THF, bifunctional, oxidoreductase;
HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2
PDB: 1dia_A* 1dib_A* 1dig_A*
Length = 301
Score = 472 bits (1218), Expect = e-169
Identities = 129/297 (43%), Positives = 194/297 (65%), Gaps = 6/297 (2%)
Query: 73 TATVIDGKSIAEEIRSGIDKEVRRMK-KSIGKVPGLAVILVGERRDSQTYVRNKIKACEE 131
A +++GK I+ +IR+ + +V ++K + G P LA++ VG R DS Y+ K+KA EE
Sbjct: 3 PAEILNGKEISAQIRARLKNQVTQLKEQVPGFTPRLAILQVGNRDDSNLYINVKLKAAEE 62
Query: 132 VGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQH--LDEGKILDAVSLEK 189
+GIK+ + TE EV+ +++ N+DS+++G LVQLPL ++ ++++A++ EK
Sbjct: 63 IGIKATHIKLPRTTTESEVMKYITSLNEDSTVHGFLVQLPLDSENSINTEEVINAIAPEK 122
Query: 190 DVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTS 249
DVDG +N G LA FIPCTPKGC+EL+ +GV I G++AVV+GRS IVG P
Sbjct: 123 DVDGLTSINAGRLARGDLNDCFIPCTPKGCLELIKETGVPIAGRHAVVVGRSKIVGAPMH 182
Query: 250 LLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVD 309
LL ++ATV+ H+ T + ++ ++ DI++ A G +V+G W+KPGA+V+D G V
Sbjct: 183 DLLLWNNATVTTCHSKTAHLDEEVNKGDILVVATGQPEMVKGEWIKPGAIVIDCGINYVP 242
Query: 310 VSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYG 366
D G +++GDV Y+EA AS ITPVPGGVGPMTVAML+ +T++SAKR
Sbjct: 243 ---DDKKPNGRKVVGDVAYDEAKERASFITPVPGGVGPMTVAMLMQSTVESAKRFLE 296
>3l07_A Bifunctional protein fold; structural genomics, IDP01849,
methylenetetrahydrofolate dehydrogenase; 1.88A
{Francisella tularensis}
Length = 285
Score = 440 bits (1134), Expect = e-156
Identities = 118/293 (40%), Positives = 169/293 (57%), Gaps = 11/293 (3%)
Query: 72 QTATVIDGKSIAEEIRSGIDKEVRRMKKSIGKVPGLAVILVGERRDSQTYVRNKIKACEE 131
+IDGKS++++++ + +V+ K P L I+VG S+TYV +K KAC +
Sbjct: 2 NAMILIDGKSLSKDLKERLATQVQEYKHHTAITPKLVAIIVGNDPASKTYVASKEKACAQ 61
Query: 132 VGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDV 191
VGI S V + TE E+L + N DSS++ ILVQLPLP H+++ ++ ++ EKDV
Sbjct: 62 VGIDSQVITLPEHTTESELLELIDQLNNDSSVHAILVQLPLPAHINKNNVIYSIKPEKDV 121
Query: 192 DGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLL 251
DGFHP N+G L +R + CTPKG + +L G++ G AVV+G SN+VG P S L
Sbjct: 122 DGFHPTNVGRLQLRD-KKCLESCTPKGIMTMLREYGIKTEGAYAVVVGASNVVGKPVSQL 180
Query: 252 LQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVS 311
L ATV+ H T + + T++ADI+I A G N + +K GAVV+DVG VD
Sbjct: 181 LLNAKATVTTCHRFTTDLKSHTTKADILIVAVGKPNFITADMVKEGAVVIDVGINHVD-- 238
Query: 312 VDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRA 364
+++GDV + + ITPVPGGVGPMT+ LL NT A+
Sbjct: 239 --------GKIVGDVDFAAVKDKVAAITPVPGGVGPMTITELLYNTFQCAQEL 283
>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A
{Pseudomonas aeruginosa PAO1}
Length = 286
Score = 439 bits (1132), Expect = e-156
Identities = 140/293 (47%), Positives = 182/293 (62%), Gaps = 11/293 (3%)
Query: 73 TATVIDGKSIAEEIRSGIDKEVRRMKKSIGKVPGLAVILVGERRDSQTYVRNKIKACEEV 132
TA +IDGK+IA +R I + V ++ +VPGLAVILVG SQ YV +K K CEEV
Sbjct: 4 TAQLIDGKAIAANLRQQIAQRVTERRQQGLRVPGLAVILVGTDPASQVYVAHKRKDCEEV 63
Query: 133 GIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVD 192
G S + ++D++L + N D +I+GILVQLPLP HLD +L+ + +KDVD
Sbjct: 64 GFLSQAYDLPAETSQDDLLALIDRLNDDPAIDGILVQLPLPAHLDASLLLERIHPDKDVD 123
Query: 193 GFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLL 252
GFHP NIG LA R PL PCTPKG + LL +G ++ G +AVV+G SNIVG P +L L
Sbjct: 124 GFHPYNIGRLAQ--RMPLLRPCTPKGIMTLLASTGADLYGMDAVVVGASNIVGRPMALEL 181
Query: 253 QRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSV 312
TV++ H T++ S AD+V+ AAG LV+G W+K GA+V+DVG
Sbjct: 182 LLGGCTVTVTHRFTRDLADHVSRADLVVVAAGKPGLVKGEWIKEGAIVIDVGINRQA--- 238
Query: 313 DPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAY 365
RL+GDV YE A + AS ITPVPGGVGPMT A LL NTL +A+ +
Sbjct: 239 ------DGRLVGDVEYEVAAQRASWITPVPGGVGPMTRACLLENTLHAAEHLH 285
>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase,
cyclcohydrolase, channeling, oxidoreductase,hydrolase;
2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2
Length = 288
Score = 439 bits (1132), Expect = e-156
Identities = 129/295 (43%), Positives = 181/295 (61%), Gaps = 11/295 (3%)
Query: 73 TATVIDGKSIAEEIRSGIDKEVRRMKKSIGKVPGLAVILVGERRDSQTYVRNKIKACEEV 132
A +IDGK+IA+++RS + ++V+ + + PGLAV+LVG SQ YV +K KACEEV
Sbjct: 2 AAKIIDGKTIAQQVRSEVAQKVQARIAAGLRAPGLAVVLVGSNPASQIYVASKRKACEEV 61
Query: 133 GIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVD 192
G S + + +E E+L + N D++I+GILVQLPLP +D K+L+ + +KDVD
Sbjct: 62 GFVSRSYDLPETTSEAELLELIDTLNADNTIDGILVQLPLPAGIDNVKVLERIHPDKDVD 121
Query: 193 GFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLL 252
GFHP N+G L R P PCTP+G + LL R ++ G NAVVIG SNIVG P S+ L
Sbjct: 122 GFHPYNVGRLCQ--RAPRLRPCTPRGIVTLLERYNIDTFGLNAVVIGASNIVGRPMSMEL 179
Query: 253 QRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSV 312
T ++ H TKN AD++I A G + G W+K GA+V+DVG ++
Sbjct: 180 LLAGCTTTVTHRFTKNLRHHVENADLLIVAVGKPGFIPGDWIKEGAIVIDVGINRLE--- 236
Query: 313 DPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYGF 367
+ +++GDV +E+A + AS ITPVPGGVGPMTVA L+ NTL + +
Sbjct: 237 NG------KVVGDVVFEDAAKRASYITPVPGGVGPMTVATLIENTLQACVEYHDP 285
>3p2o_A Bifunctional protein fold; structural genomics, center for
structural genomics of infec diseases, csgid,
alpha-beta-alpha sandwich; HET: NAD; 2.23A
{Campylobacter jejuni subsp}
Length = 285
Score = 436 bits (1123), Expect = e-155
Identities = 132/291 (45%), Positives = 193/291 (66%), Gaps = 11/291 (3%)
Query: 73 TATVIDGKSIAEEIRSGIDKEVRRMKKSIGKVPGLAVILVGERRDSQTYVRNKIKACEEV 132
T++DGK+++ +I+ + ++ + +K G LAVILVG+ SQTYV++K KACEE
Sbjct: 3 AMTLLDGKALSAKIKEELKEKNQFLKSK-GIESCLAVILVGDNPASQTYVKSKAKACEEC 61
Query: 133 GIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVD 192
GIKS+V + T++E+L ++ N D S++GILVQLPLP H+ + IL+++ KDVD
Sbjct: 62 GIKSLVYHLNENITQNELLALINTLNHDDSVHGILVQLPLPDHICKDLILESIISSKDVD 121
Query: 193 GFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLL 252
GFHP+N+G L + G E F+PCTP G ++LL +++ GK+AV+IG SNIVG P + +L
Sbjct: 122 GFHPINVGYLNL-GLESGFLPCTPLGVMKLLKAYEIDLEGKDAVIIGASNIVGRPMATML 180
Query: 253 QRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSV 312
ATVS+ H TK+ T +AD++I AAG NL+R +K G +V+DVG ++
Sbjct: 181 LNAGATVSVCHIKTKDLSLYTRQADLIIVAAGCVNLLRSDMVKEGVIVVDVGINRLE--- 237
Query: 313 DPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKR 363
+++GDV +EE + +S ITPVPGGVGPMT+AMLL NT+ SAK
Sbjct: 238 SG------KIVGDVDFEEVSKKSSYITPVPGGVGPMTIAMLLENTVKSAKN 282
>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate
dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma
acidophilum} PDB: 3ngl_A
Length = 276
Score = 411 bits (1058), Expect = e-145
Identities = 83/288 (28%), Positives = 149/288 (51%), Gaps = 19/288 (6%)
Query: 76 VIDGKSIAEEIRSGIDKEVRRMKKSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIK 135
++ G+ IAE+ + + + + G P L +I +G+ + Y R KI+ +++GI
Sbjct: 3 ILRGEEIAEKKA----ENLHGIIERSGLEPSLKLIQIGDNEAASIYARAKIRRGKKIGIA 58
Query: 136 SIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFH 195
+ ++ D + ++L + + +D INGI+++ PLP+ D +I+ + KDVD
Sbjct: 59 VDLEKYDD-ISMKDLLKRIDDLAKDPQINGIMIENPLPKGFDYYEIVRNIPYYKDVDALS 117
Query: 196 PLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRH 255
P N G +A+ +P TP+ I+++ G ++ RS +VG P S++L
Sbjct: 118 PYNQGLIALN--REFLVPATPRAVIDIMDYYGYH--ENTVTIVNRSPVVGRPLSMMLLNR 173
Query: 256 HATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPS 315
+ TVS+ H+ TK+ +T + IV+ A G + + PG+VV+DVG V+
Sbjct: 174 NYTVSVCHSKTKDIGSMTRSSKIVVVAVGRPGFLNREMVTPGSVVIDVGINYVND----- 228
Query: 316 CEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKR 363
+++GD +E+ ITPVPGGVGP+T +L N + +A+
Sbjct: 229 -----KVVGDANFEDLSEYVEAITPVPGGVGPITATNILENVVKAAEF 271
>2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate
cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis}
PDB: 2c2y_A
Length = 281
Score = 410 bits (1056), Expect = e-145
Identities = 117/293 (39%), Positives = 166/293 (56%), Gaps = 16/293 (5%)
Query: 73 TATVIDGKSIAEEIRSGIDKEVRRMKKSIGKVPGLAVILVGERRDSQTYVRNKIKACEEV 132
A ++DGK+ +EI + + V + + G+ PGL ILVG+ SQ YVR K C +V
Sbjct: 2 GAIMLDGKATRDEIFGDLKQRVAALDAA-GRTPGLGTILVGDDPGSQAYVRGKHADCAKV 60
Query: 133 GIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVD 192
GI SI + + + + N + G +VQLPLP+HLDE L+ V KD D
Sbjct: 61 GITSIRRDLPADISTATLNETIDELNANPDCTGYIVQLPLPKHLDENAALERVDPAKDAD 120
Query: 193 GFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLL 252
G HP N+G L + P +PCTP+G + LL R + I G + VVIGR VG P LLL
Sbjct: 121 GLHPTNLGRLVL--GTPAPLPCTPRGIVHLLRRYDISIAGAHVVVIGRGVTVGRPLGLLL 178
Query: 253 QR--HHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDV 310
R +ATV++ H T++ +T +ADIV+AA GVA+L+ ++PGA V+DVG D
Sbjct: 179 TRRSENATVTLCHTGTRDLPALTRQADIVVAAVGVAHLLTADMVRPGAAVIDVGVSRTDD 238
Query: 311 SVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKR 363
L+GDV + + LA ++P PGGVGP+T A LL+N ++ A+R
Sbjct: 239 ----------GLVGDV-HPDVWELAGHVSPNPGGVGPLTRAFLLTNVVELAER 280
>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding
domain, monofunctional, oxidoreductase; 2.80A
{Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB:
1ee9_A*
Length = 320
Score = 359 bits (924), Expect = e-124
Identities = 76/335 (22%), Positives = 122/335 (36%), Gaps = 67/335 (20%)
Query: 72 QTATVIDGKSIAEEIRSGIDKEVRRMKKSI-GKVPGLAVILVGERRDSQTYVRNKIKACE 130
+ I +AE + I V KK+ G+ P L L ++ Y K E
Sbjct: 3 KPGRTILASKVAETFNTEIINNVEEYKKTHNGQGPLLVGFLANNDPAAKMYATWTQKTSE 62
Query: 131 EVGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSLEKD 190
+G + + +D + A+ N D S+NGI+V P+ + + + V EKD
Sbjct: 63 SMGFRYDLRVIE---DKDFLEEAIIQANGDDSVNGIMVYFPVFGNAQDQYLQQVVCKEKD 119
Query: 191 VDGFHPLNIGNL-------AMRGREPLFIPCTPKGCIELL---------IRSGVEIMGKN 234
V+G + + NL R +PCTP +++L + G + GK
Sbjct: 120 VEGLNHVYYQNLYHNVRYLDKENRLKSILPCTPLAIVKILEFLKIYNNLLPEGNRLYGKK 179
Query: 235 AVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKN-------------------------P 269
+VI RS IVG P + LL ATV V
Sbjct: 180 CIVINRSEIVGRPLAALLANDGATVYSVDVNNIQKFTRGESLKLNKHHVEDLGEYSEDLL 239
Query: 270 EQITSEADIVIAAAGVAN-LVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCY 328
++ + ++D+VI N ++K GAV ++
Sbjct: 240 KKCSLDSDVVITGVPSENYKFPTEYIKEGAVCINFACTKNF------------------S 281
Query: 329 EEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKR 363
++ AS+ P+ G V T+AMLL N L +
Sbjct: 282 DDVKEKASLYVPMTGKV---TIAMLLRNMLRLVRN 313
>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint
center for structural genomics, JCSG, protein structu
initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus
halodurans}
Length = 293
Score = 56.9 bits (137), Expect = 2e-09
Identities = 28/163 (17%), Positives = 55/163 (33%), Gaps = 33/163 (20%)
Query: 215 TPKGCIELLIR-SGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQIT 273
T +G I + I+ + I G N V+G + G+ + A V + + +I
Sbjct: 137 TAEGTIMMAIQHTDFTIHGANVAVLGLGRV-GMSVARKFAALGAKVKVGARESDLLARIA 195
Query: 274 S----------------EADIVIAA--AGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPS 315
+ D+ I A V + + V+D+ + P +
Sbjct: 196 EMGMEPFHISKAAQELRDVDVCINTIPALVVTANVLAEMPSHTFVIDLASKPGGTDFRYA 255
Query: 316 CEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTL 358
+ G + + + +PG V P T +L++ L
Sbjct: 256 EKRGIKALL-------------VPGLPGIVAPKTAGRILADVL 285
>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343,
PSI-2, structure initiative; HET: MSE NAP; 2.79A
{Bacillus subtilis}
Length = 300
Score = 41.7 bits (98), Expect = 2e-04
Identities = 29/167 (17%), Positives = 50/167 (29%), Gaps = 41/167 (24%)
Query: 215 TPKGCIELLI-RSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIV----------- 262
T +G I L I + I G V+G G+ + A V +
Sbjct: 139 TVEGTIMLAIQHTDYTIHGSQVAVLG-LGRTGMTIARTFAALGANVKVGARSSAHLARIT 197
Query: 263 -----HALTKNPEQITSEADIVIAAAGVANLVRG--SWLKPGAVVLDVGTCPVDVSVDPS 315
T ++ + DI I L + S + P ++ +D++ P
Sbjct: 198 EMGLVPFHTDELKEHVKDIDICINTIPSMILNQTVLSSMTPKTLI-------LDLASRPG 250
Query: 316 CEYGYRLMGDVCYEEAMRLASVI----TPVPGGVGPMTVAMLLSNTL 358
+ + +PG V P T +L+N L
Sbjct: 251 G----------TDFKYAEKQGIKALLAPGLPGIVAPKTAGQILANVL 287
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 40.2 bits (93), Expect = 0.001
Identities = 47/288 (16%), Positives = 81/288 (28%), Gaps = 113/288 (39%)
Query: 7 RTMRRMVGATAWPWAWATRSLNLSAINDNRIIMSPPLITL--DLPEIWTPPNSRDCNPLP 64
+ +M W LNL N ++ L L + WT + N
Sbjct: 175 KVQCKMDFKIFW--------LNLKNCNSPETVLEM-LQKLLYQIDPNWTSRSDHSSNI-K 224
Query: 65 QRNCSNLQTATVIDGKSIAEEIRSGIDKEVRRMKKSIGKVPGLAVILVGERRDSQTYVRN 124
R I+ E+RR+ KS L ++L + V+N
Sbjct: 225 LR----------------IHSIQ----AELRRLLKSKPYENCL-LVL----LN----VQN 255
Query: 125 K--IKA----CEEVGIKSIVT---------------------EFADGCTEDEVLNALSNY 157
A C K ++T + T DEV + L Y
Sbjct: 256 AKAWNAFNLSC-----KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKY 310
Query: 158 NQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPK 217
++ LP ++V +P + +A R+ T
Sbjct: 311 -----LDCRPQDLP-----------------REVLTTNPRRLSIIAESIRDG---LATWD 345
Query: 218 -----GCIEL--LIRSGVEIMGKN-------AVVIGRSNIVGLPTSLL 251
C +L +I S + ++ + + + +PT LL
Sbjct: 346 NWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPS-AHIPTILL 392
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 37.7 bits (87), Expect = 0.007
Identities = 48/342 (14%), Positives = 97/342 (28%), Gaps = 124/342 (36%)
Query: 21 AWATRSLNLS--AINDNRIIMSPPLITLDLP-EIWTPPNSRDCNPLPQRNCSNLQTATVI 77
A++TR L LS ++ L +P + + L ++ L T
Sbjct: 3 AYSTRPLTLSHGSLE----------HVLLVPTASFFI-----ASQLQEQFNKILPEPT-- 45
Query: 78 DGKSIAEEIRSGIDKEVRRMKKSIGKVPGLAVILVGERRDSQTYV-----RNKIKACEEV 132
+G + +E + L +G YV +K+ ++V
Sbjct: 46 EGFAADDEPTT---------------PAELVGKFLG-------YVSSLVEPSKVGQFDQV 83
Query: 133 GIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVS------ 186
+ +TEF E+ L + + I+ + +L K + +
Sbjct: 84 -LNLCLTEF-----ENCYL-------EGNDIHALAAKLLQENDTTLVKTKELIKNYITAR 130
Query: 187 --LEKDVDGFHPLNIGNLAMRGREPLF------------------IPCTPKGCIELLIRS 226
++ D + G L + T + LI+
Sbjct: 131 IMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKF 190
Query: 227 ---------------------GVEIMG--KNAVVI-GRSNIVGLPTSL----LLQRHHAT 258
G+ I+ +N + ++ +P S ++Q H
Sbjct: 191 SAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYV 250
Query: 259 VSIVHALTKNPEQI-------TSEADIVIAAAGVANLVRGSW 293
V L P ++ T + ++ A +A SW
Sbjct: 251 V-TAKLLGFTPGELRSYLKGATGHSQGLVTAVAIA--ETDSW 289
Score = 31.6 bits (71), Expect = 0.58
Identities = 8/39 (20%), Positives = 15/39 (38%), Gaps = 2/39 (5%)
Query: 67 NCSNLQTATVIDGKSIAEEIRSGIDKEVRRMKKSIGKVP 105
N N Q V G A + + + ++ K I ++
Sbjct: 1847 NVENQQY--VAAGDLRALDTVTNVLNFIKLQKIDIIELQ 1883
>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate
dehydrogenase (EC...; 1574749, chorismate mutase type
II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae}
SCOP: a.100.1.12 c.2.1.6
Length = 298
Score = 35.8 bits (83), Expect = 0.016
Identities = 16/83 (19%), Positives = 30/83 (36%), Gaps = 13/83 (15%)
Query: 231 MGKNAVVIGRSNIVGLPTSLL---LQRHHATVSIV-HALTKNPEQITSEADIVIAAAGVA 286
+ K +V G G L L+ +SI+ E I + AD+VI + +
Sbjct: 21 IHKIVIVGG----YGKLGGLFARYLRASGYPISILDREDWAVAESILANADVVIVSVPIN 76
Query: 287 NLVR-----GSWLKPGAVVLDVG 304
+ +L ++ D+
Sbjct: 77 LTLETIERLKPYLTENMLLADLT 99
>2i99_A MU-crystallin homolog; thyroid hormine binding protein,
oxidoreductase; HET: NDP; 2.60A {Homo sapiens}
Length = 312
Score = 35.7 bits (83), Expect = 0.019
Identities = 13/53 (24%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Query: 266 TKNPEQITSEADIVIAA-AGVANLVRGSWLKPGAVVLDVGT-CPVDVSVDPSC 316
+ ++ + AD++I ++ G W+KPGA + VG P +D
Sbjct: 187 CSSVQEAVAGADVIITVTLATEPILFGEWVKPGAHINAVGASRPDWRELDDEL 239
>1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer,
rossmann-fold NAD domain, human MU crystallin homolog;
HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13
PDB: 1vll_A
Length = 322
Score = 34.1 bits (79), Expect = 0.058
Identities = 9/53 (16%), Positives = 21/53 (39%), Gaps = 2/53 (3%)
Query: 266 TKNPEQITSEADIVIAA-AGVANLVRGSWLKPGAVVLDVGT-CPVDVSVDPSC 316
+ P + S D+++ +V+ W++ G + +G P +D
Sbjct: 178 SVQPAEEASRCDVLVTTTPSRKPVVKAEWVEEGTHINAIGADGPGKQELDVEI 230
>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate,
oxidative decarboxylation pathway, tyrosine
biosynthesis, oxidoreduct; HET: NAD; 2.10A
{Streptococcus mutans} PDB: 3dzb_A
Length = 290
Score = 32.9 bits (76), Expect = 0.12
Identities = 10/50 (20%), Positives = 19/50 (38%), Gaps = 6/50 (12%)
Query: 261 IVHALTKNPEQITSEADIVI------AAAGVANLVRGSWLKPGAVVLDVG 304
IV T + + + AD++I ++ LK ++ D G
Sbjct: 52 IVDEATADFKVFAALADVIILAVPIKKTIDFIKILADLDLKEDVIITDAG 101
>1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds
L-proline, 2 bundle, beta barrel, rossmann fold, lyase;
HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP:
c.2.1.13 PDB: 1u7h_A*
Length = 350
Score = 33.1 bits (76), Expect = 0.13
Identities = 11/55 (20%), Positives = 19/55 (34%), Gaps = 4/55 (7%)
Query: 266 TKNPEQITSEADIVIAA-AGVAN--LVRGSWLKPGAVVLDVGT-CPVDVSVDPSC 316
+ + DI+ A A ++ L+PG + VG CP +
Sbjct: 185 ASSVAEAVKGVDIITTVTADKAYATIITPDMLEPGMHLNAVGGDCPGKTELHADV 239
>3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis
TOH structural genomics, PSI-2, protein structure
initiative; 1.70A {Bordetella pertussis}
Length = 313
Score = 33.0 bits (76), Expect = 0.13
Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Query: 268 NPEQITSEADIVIAA-AGVANLVRGSWLKPGAVVLDVGT-CPVDVSVDPSC 316
P I ++ADIV+ A L G L+ GA V +G+ P +D
Sbjct: 176 APADIAAQADIVVTATRSTTPLFAGQALRAGAFVGAIGSSLPHTRELDDEA 226
>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design,
oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex
aeolicus} PDB: 2hk8_A 2hk7_A
Length = 275
Score = 31.7 bits (73), Expect = 0.27
Identities = 19/112 (16%), Positives = 39/112 (34%), Gaps = 32/112 (28%)
Query: 218 GCIELLIRSGVEIMGKNAVVIG-----RSNIVGLPTSLLLQRHHATVSIV-------HAL 265
G ++ L E+ K+ +V+G R+ I L + A V + L
Sbjct: 115 GFLKSLKSLIPEVKEKSILVLGAGGASRAVIYA------LVKEGAKVFLWNRTKEKAIKL 168
Query: 266 TKN--------PEQITSEADIVIAAAGV------ANLVRGSWLKPGAVVLDV 303
+ PE++ + +++ V + +K VV+D+
Sbjct: 169 AQKFPLEVVNSPEEVIDKVQVIVNTTSVGLKDEDPEIFNYDLIKKDHVVVDI 220
>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography
structure, oxidoreductase; HET: OMT NAP; 1.55A
{Synechocystis SP} SCOP: a.100.1.12 c.2.1.6
Length = 279
Score = 30.2 bits (69), Expect = 0.88
Identities = 9/49 (18%), Positives = 18/49 (36%), Gaps = 6/49 (12%)
Query: 261 IVHALTKNPEQITSEADIVIAAAGVANLVR-----GSWLKPGAVVLDVG 304
+V ++ + A I+ + ++ L P A+V DV
Sbjct: 44 LVDEAGQDLSLL-QTAKIIFLCTPIQLILPTLEKLIPHLSPTAIVTDVA 91
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.5 bits (65), Expect = 1.00
Identities = 4/23 (17%), Positives = 12/23 (52%), Gaps = 5/23 (21%)
Query: 92 KEVRRMKKSI-----GKVPGLAV 109
+ +++++ S+ P LA+
Sbjct: 20 QALKKLQASLKLYADDSAPALAI 42
>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted
open sheet structure, oxidoreductase; 1.90A
{Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4
PDB: 1lua_A*
Length = 287
Score = 29.5 bits (66), Expect = 1.8
Identities = 22/111 (19%), Positives = 36/111 (32%), Gaps = 30/111 (27%)
Query: 227 GVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVH----------------------- 263
G + GK AVV+ + VG+ ++ LL A V +
Sbjct: 114 GGSVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKRFKVNVTA 173
Query: 264 ---ALTKNPEQITSEADIVI--AAAGVANLVRGSWLKPGA--VVLDVGTCP 307
A + + A V A G+ L + +W + +V D P
Sbjct: 174 AETADDASRAEAVKGAHFVFTAGAIGLELLPQAAWQNESSIEIVADYNAQP 224
>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A
{Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6
Length = 281
Score = 29.1 bits (66), Expect = 2.3
Identities = 10/50 (20%), Positives = 17/50 (34%), Gaps = 6/50 (12%)
Query: 261 IVHALTKNPEQI-TSEADIVIAAAGVANLVR-----GSWLKPGAVVLDVG 304
I+ T + ++ D V+ ++ V L A V D G
Sbjct: 47 IIDEGTTSIAKVEDFSPDFVMLSSPVRTFREIAKKLSYILSEDATVTDQG 96
>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI;
2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A
2vhz_A* 2vhv_A* 2voe_A 2voj_A*
Length = 377
Score = 29.0 bits (66), Expect = 2.4
Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 23/56 (41%)
Query: 270 EQITSEADIVIAAAGVANLVRG------------SWLKPGAVVLDVGTCPVDVSVD 313
E AD+VI A LV G + +KPGAV+ VD+++D
Sbjct: 226 EGAVKRADLVIGAV----LVPGAKAPKLVSNSLVAHMKPGAVL-------VDIAID 270
>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for
structural genomics of infec diseases, csgid; HET: EPE;
1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A*
3pgj_A* 3o8q_B*
Length = 281
Score = 29.0 bits (66), Expect = 2.4
Identities = 21/111 (18%), Positives = 37/111 (33%), Gaps = 27/111 (24%)
Query: 218 GCIELLIRSGVEIMGKNAVVIG-----RSNIVGL----PTSLL-----------LQRHHA 257
G ++ L+ V + G ++IG R + L P S+ L A
Sbjct: 112 GLVQDLLAQQVLLKGATILLIGAGGAARGVLKPLLDQQPASITVTNRTFAKAEQLAELVA 171
Query: 258 TVSIVHALTKNPEQITSEADIVIAA--AGVAN---LVRGSWLKPGAVVLDV 303
V A EQ+ D++I + A + + +V D+
Sbjct: 172 AYGEVKAQ--AFEQLKQSYDVIINSTSASLDGELPAIDPVIFSSRSVCYDM 220
>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta,
oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus}
PDB: 3ggg_D* 3ggp_A*
Length = 314
Score = 29.2 bits (66), Expect = 2.4
Identities = 10/50 (20%), Positives = 17/50 (34%), Gaps = 6/50 (12%)
Query: 261 IVHALTKNPEQI-TSEADIVIAAAGVANLVR-----GSWLKPGAVVLDVG 304
I+ T + ++ D V+ ++ V L A V D G
Sbjct: 79 IIDEGTTSIAKVEDFSPDFVMLSSPVRTFREIAKKLSYILSEDATVTDQG 128
>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA,
national project on protein structural and function
analyses; 2.71A {Thermus thermophilus}
Length = 369
Score = 28.6 bits (65), Expect = 3.0
Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 23/56 (41%)
Query: 270 EQITSEADIVIAAAGVANLVRG------------SWLKPGAVVLDVGTCPVDVSVD 313
++ AD++I A LV G S +K GAV+ VDV+VD
Sbjct: 224 KKSVQHADLLIGAV----LVPGAKAPKLVTRDMLSLMKEGAVI-------VDVAVD 268
>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold,
amino-acid biosynthesis, amino acid biosynthesis, NADP,
oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB:
3doo_A*
Length = 277
Score = 28.7 bits (65), Expect = 3.1
Identities = 15/107 (14%), Positives = 35/107 (32%), Gaps = 21/107 (19%)
Query: 218 GCIELLIRSGVEIMGKNAVVIG-----RSNIVGL----PTSLLL-----QRHHATVSIVH 263
G + L + I +++G + L +L + R + ++
Sbjct: 103 GYVNGLKQIYEGIEDAYILILGAGGASKGIANELYKIVRPTLTVANRTMSRFNNWSLNIN 162
Query: 264 ALT-KNPEQITSEADIVIAAAGV------ANLVRGSWLKPGAVVLDV 303
+ + E E DI+I +++ + L +V D+
Sbjct: 163 KINLSHAESHLDEFDIIINTTPAGMNGNTDSVISLNRLASHTLVSDI 209
>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD;
2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB:
1pjb_A* 1say_A
Length = 361
Score = 28.6 bits (65), Expect = 3.1
Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 23/56 (41%)
Query: 270 EQITSEADIVIAAAGVANLVRG------------SWLKPGAVVLDVGTCPVDVSVD 313
E +EAD++I A LV G ++ G+V+ VDV+VD
Sbjct: 225 ETAVAEADLLIGAV----LVPGRRAPILVPASLVEQMRTGSVI-------VDVAVD 269
>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers,
NAD binding DOMA amino acid insertional region,
hydrolase; HET: ADN NAD; 1.60A {Mycobacterium
tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*
Length = 494
Score = 28.6 bits (64), Expect = 3.4
Identities = 21/93 (22%), Positives = 41/93 (44%), Gaps = 17/93 (18%)
Query: 228 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSI-----VHAL--------TKNPEQITS 274
I GK ++ G + VG + ++ A VS+ ++AL E+
Sbjct: 270 ALIGGKKVLICGYGD-VGKGCAEAMKGQGARVSVTEIDPINALQAMMEGFDVVTVEEAIG 328
Query: 275 EADIVIAAAGVANLVRG---SWLKPGAVVLDVG 304
+ADIV+ A G +++ +K A++ ++G
Sbjct: 329 DADIVVTATGNKDIIMLEHIKAMKDHAILGNIG 361
>2o7s_A DHQ-SDH PR, bifunctional 3-dehydroquinate dehydratase/shikima
dehydrogenase; shikimate, NADPH, dehydroshikimate,
bifunctional enzyme; HET: DHK TLA NAP; 1.78A
{Arabidopsis thaliana} PDB: 2o7q_A* 2gpt_A*
Length = 523
Score = 28.5 bits (64), Expect = 3.9
Identities = 18/118 (15%), Positives = 30/118 (25%), Gaps = 36/118 (30%)
Query: 216 PKGCIELLIRSGVEIMGKNAVVIG-----RSNIVGLPTSLLLQRHHATVSIV-------- 262
G + S + K VVIG ++ G + A V I
Sbjct: 348 SSGDPSSVPSSSSPLASKTVVVIGAGGAGKALAYGA------KEKGAKVVIANRTYERAL 401
Query: 263 ----------HALTKNPEQITSEADIVIAAAGV-------ANLVRGSWLKPGAVVLDV 303
+LT + ++ + + LK A+V D
Sbjct: 402 ELAEAIGGKALSLTDLDNYHPEDGMVLANTTSMGMQPNVEETPISKDALKHYALVFDA 459
>2b0j_A 5,10-methenyltetrahydromethanopterin hydrogenase; rossmann fold,
helix bundle, oxidoreductase; 1.75A {Methanocaldococcus
jannaschii} SCOP: a.100.1.11 c.2.1.6 PDB: 3f47_A*
3daf_A* 3dag_A* 3f46_A* 3h65_A*
Length = 358
Score = 28.2 bits (62), Expect = 4.0
Identities = 12/52 (23%), Positives = 17/52 (32%), Gaps = 6/52 (11%)
Query: 265 LTKNPEQITSEADIVIAAAGVANLVRG------SWLKPGAVVLDVGTCPVDV 310
+T + + ADIVI N + GA+V T P
Sbjct: 131 VTSDDREAVEGADIVITWLPKGNKQPDIIKKFADAIPEGAIVTHACTIPTTK 182
>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for
structural genomics of infec diseases, csgid; HET: NAD;
1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A*
1vi2_A*
Length = 312
Score = 28.3 bits (64), Expect = 4.3
Identities = 19/123 (15%), Positives = 35/123 (28%), Gaps = 37/123 (30%)
Query: 218 GCIELLIRSGVEIMGKNAVVIG-----RSNIVGLP------------TSLLLQRHHATVS 260
G I + SG ++ GK V++G + ++ A
Sbjct: 134 GHIRAIKESGFDMRGKTMVLLGAGGAATAIGAQAAIEGIKEIKLFNRKDDFFEKAVAFAK 193
Query: 261 IVHALTKNPEQITS------------EADIVI--------AAAGVANLVRGSWLKPGAVV 300
V+ T +T ADI+ + + S L+P +V
Sbjct: 194 RVNENTDCVVTVTDLADQHAFTEALASADILTNGTKVGMKPLENESLIGDVSLLRPELLV 253
Query: 301 LDV 303
+
Sbjct: 254 TEC 256
>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural
genomics, PSI-biology, midwest center for structu
genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}
Length = 312
Score = 28.3 bits (63), Expect = 4.3
Identities = 13/49 (26%), Positives = 19/49 (38%), Gaps = 7/49 (14%)
Query: 269 PEQITSEADIVI------AAAGVANLVRGSWLKPGAVVLDVGTCPVDVS 311
++ E D++ AA VA G L GA+ D +C V
Sbjct: 77 VAEVAGECDVIFSLVTAQAALEVAQQA-GPHLCEGALYADFTSCSPAVK 124
>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon
SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A
Length = 383
Score = 28.1 bits (62), Expect = 5.1
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 284 GVANLVRGSWLKPGAVVLDVG 304
G + + GA VLD+G
Sbjct: 71 GCGSTLPADGSLEGATVLDLG 91
>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction,
structural genomics, NPPSFA; 2.25A {Geobacillus
kaustophilus}
Length = 297
Score = 27.9 bits (63), Expect = 5.6
Identities = 21/110 (19%), Positives = 38/110 (34%), Gaps = 29/110 (26%)
Query: 222 LLIRSGVEIMGKNAVVIG-----RSNIVGLPTS----------------LLLQRHHATVS 260
L + + GK +VIG R L ++ L++ S
Sbjct: 131 LEEEMNITLDGKRILVIGAGGGARGIYFSLLSTAAERIDMANRTVEKAERLVREGDERRS 190
Query: 261 IVHALTKNPEQITSEADIVIAAAGV-------ANLVRGSWLKPGAVVLDV 303
+L + ++ +E DI+I V + L+PG +V D+
Sbjct: 191 AYFSLAEAETRL-AEYDIIINTTSVGMHPRVEVQPLSLERLRPGVIVSDI 239
>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics,
seattle structural G center for infectious disease; HET:
ADN NAD; 2.39A {Brucella melitensis biovar abortus}
Length = 464
Score = 27.7 bits (62), Expect = 6.1
Identities = 30/108 (27%), Positives = 46/108 (42%), Gaps = 22/108 (20%)
Query: 218 GCIELL---IRSGVEIM--GKNAVVIGRSNIVGLPTSLLLQRHHATVSI-----VHAL-- 265
GC E L IR G ++M GK AVV G + VG ++ L A V + + AL
Sbjct: 228 GCKESLVDGIRRGTDVMMAGKVAVVCGYGD-VGKGSAQSLAGAGARVKVTEVDPICALQA 286
Query: 266 ------TKNPEQITSEADIVIAAAGVANLVRG---SWLKPGAVVLDVG 304
+ S ADIV+ G +++ +K +V ++G
Sbjct: 287 AMDGFEVVTLDDAASTADIVVTTTGNKDVITIDHMRKMKDMCIVGNIG 334
>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics,
PSI-biology, protein structure in northeast structural
genomics; 2.20A {Methanosarcina mazei}
Length = 235
Score = 27.4 bits (61), Expect = 7.4
Identities = 4/19 (21%), Positives = 10/19 (52%)
Query: 287 NLVRGSWLKPGAVVLDVGT 305
+ ++L+ +LD+G
Sbjct: 21 YPIIHNYLQEDDEILDIGC 39
>3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein
structure initiative, midwest center for structural
genomics, MCSG; 2.06A {Listeria innocua}
Length = 202
Score = 27.2 bits (61), Expect = 7.5
Identities = 12/69 (17%), Positives = 23/69 (33%), Gaps = 12/69 (17%)
Query: 232 GKNAVVIGRSNIVGLPTSLLLQRHHATVSI------VHALTKNPEQITSEA------DIV 279
++IG S +G L++ ++ V N + I D +
Sbjct: 3 AMKILLIGASGTLGSAVKERLEKKAEVITAGRHSGDVTVDITNIDSIKKMYEQVGKVDAI 62
Query: 280 IAAAGVANL 288
++A G A
Sbjct: 63 VSATGSATF 71
>1tq1_A AT5G66040, senescence-associated family protein; CESG, structural
genomics, protein structure initiative; NMR {Arabidopsis
thaliana} SCOP: c.46.1.3
Length = 129
Score = 26.6 bits (59), Expect = 7.8
Identities = 8/38 (21%), Positives = 13/38 (34%), Gaps = 2/38 (5%)
Query: 266 TKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDV 303
+ + +E V ++ V L G LDV
Sbjct: 3 HHHHHHLEAEESRVPSSVSVTVAHD--LLLAGHRYLDV 38
>2d3o_1 Trigger factor, TF; ribosome, nascent chain, protein folding, SRP;
3.35A {Deinococcus radiodurans} PDB: 2aar_7
Length = 112
Score = 26.0 bits (58), Expect = 8.2
Identities = 15/84 (17%), Positives = 29/84 (34%), Gaps = 26/84 (30%)
Query: 83 AEEIRSGIDKEVRRMKKSI-------GKVPGLAVILVGERRDSQTYVRNKI--------- 126
A E+ D+ + + + GK P VI E R + YV +++
Sbjct: 20 AAEVNRAYDQVWAGLARDVRVPGFRPGKAP-RKVI---ENRVGKGYVESQVRDRLLETHY 75
Query: 127 -KACEEVGIKSI-----VTEFADG 144
+ E+G+ + + G
Sbjct: 76 SQGLRELGLNLVDATVDPQDVQSG 99
>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal
binding-site; 1.87A {Escherichia coli}
Length = 346
Score = 27.2 bits (61), Expect = 8.4
Identities = 12/63 (19%), Positives = 24/63 (38%), Gaps = 8/63 (12%)
Query: 261 IVHALTKNPEQITSE------ADIVIAAAGVANLVRGS--WLKPGAVVLDVGTCPVDVSV 312
++ + Q+ S +++ AGV V + P A + VGT D+ +
Sbjct: 209 TFNSSEMSAPQMQSVLRELRFNQLILETAGVPQTVELAVEIAGPHAQLALVGTLHQDLHL 268
Query: 313 DPS 315
+
Sbjct: 269 TSA 271
>3atr_A Conserved archaeal protein; saturating double bonds, archaeal
membrane precursor, like 2 geranylgeranylglyceryl
phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius}
PDB: 3atq_A*
Length = 453
Score = 27.1 bits (60), Expect = 9.5
Identities = 7/48 (14%), Positives = 15/48 (31%)
Query: 243 IVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVR 290
+ V + E++T + +V+ A G + R
Sbjct: 118 WDLTTAMKPIFEDGYVKGAVLFNRRTNEELTVYSKVVVEATGYSRSFR 165
>3gty_X Trigger factor, TF; chaperone-client complex, cell cycle, cell
division, chapero isomerase, rotamase,
ribonucleoprotein, binding; 3.40A {Thermotoga maritima}
PDB: 3gu0_A
Length = 433
Score = 27.3 bits (61), Expect = 9.7
Identities = 10/30 (33%), Positives = 15/30 (50%), Gaps = 7/30 (23%)
Query: 83 AEEIRSGIDKEVRRMKKSI-------GKVP 105
AEEI DK VR + + + G++P
Sbjct: 21 AEEIAQAEDKAVRYLNQRVEIPGFRKGRIP 50
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.136 0.404
Gapped
Lambda K H
0.267 0.0528 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,853,659
Number of extensions: 368811
Number of successful extensions: 1319
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1271
Number of HSP's successfully gapped: 69
Length of query: 368
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 273
Effective length of database: 4,049,298
Effective search space: 1105458354
Effective search space used: 1105458354
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.6 bits)