RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 017679
(368 letters)
>d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate
dehydrogenase/cyclohydrolase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 170
Score = 163 bits (414), Expect = 4e-50
Identities = 82/170 (48%), Positives = 113/170 (66%), Gaps = 3/170 (1%)
Query: 194 FHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQ 253
+N G LA FIPCTPKGC+EL+ +GV I G++AVV+GRS IVG P LL
Sbjct: 1 LTSINAGRLARGDLNDCFIPCTPKGCLELIKETGVPIAGRHAVVVGRSKIVGAPMHDLLL 60
Query: 254 RHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVD 313
++ATV+ H+ T + ++ ++ DI++ A G +V+G W+KPGA+V+D G V D
Sbjct: 61 WNNATVTTCHSKTAHLDEEVNKGDILVVATGQPEMVKGEWIKPGAIVIDCGINYVP---D 117
Query: 314 PSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKR 363
G +++GDV Y+EA AS ITPVPGGVGPMTVAML+ +T++SAKR
Sbjct: 118 DKKPNGRKVVGDVAYDEAKERASFITPVPGGVGPMTVAMLMQSTVESAKR 167
>d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate
dehydrogenase/cyclohydrolase {Escherichia coli [TaxId:
562]}
Length = 166
Score = 155 bits (393), Expect = 5e-47
Identities = 75/172 (43%), Positives = 100/172 (58%), Gaps = 11/172 (6%)
Query: 194 FHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQ 253
FHP N+G L R P PCTP+G + LL R ++ G NAVVIG SNIVG P S+ L
Sbjct: 1 FHPYNVGRLCQR--APRLRPCTPRGIVTLLERYNIDTFGLNAVVIGASNIVGRPMSMELL 58
Query: 254 RHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVD 313
T ++ H TKN AD++I A G + G W+K GA+V+DVG ++
Sbjct: 59 LAGCTTTVTHRFTKNLRHHVENADLLIVAVGKPGFIPGDWIKEGAIVIDVGINRLE---- 114
Query: 314 PSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAY 365
+++GDV +E+A + AS ITPVPGGVGPMTVA L+ NTL + +
Sbjct: 115 -----NGKVVGDVVFEDAAKRASYITPVPGGVGPMTVATLIENTLQACVEYH 161
>d1edza2 c.58.1.2 (A:3-148) Tetrahydrofolate
dehydrogenase/cyclohydrolase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 146
Score = 150 bits (380), Expect = 2e-45
Identities = 34/150 (22%), Positives = 56/150 (37%), Gaps = 6/150 (4%)
Query: 72 QTATVIDGKSIAEEIRSGIDKEVRRMKKSI-GKVPGLAVILVGERRDSQTYVRNKIKACE 130
+ I +AE + I V KK+ G+ P L L ++ Y K E
Sbjct: 1 KPGRTILASKVAETFNTEIINNVEEYKKTHNGQGPLLVGFLANNDPAAKMYATWTQKTSE 60
Query: 131 EVGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSLEKD 190
+G + + +D + A+ N D S+NGI+V P+ + + + V EKD
Sbjct: 61 SMGFRYDLRVI---EDKDFLEEAIIQANGDDSVNGIMVYFPVFGNAQDQYLQQVVCKEKD 117
Query: 191 VDGFHPLNIGNLAMRGREPLFIPCTPKGCI 220
V+G + + NL I
Sbjct: 118 VEGLNHVYYQNLYH--NVRYLDKENRLKSI 145
>d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate
dehydrogenase/cyclohydrolase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 171
Score = 124 bits (313), Expect = 3e-35
Identities = 42/186 (22%), Positives = 65/186 (34%), Gaps = 56/186 (30%)
Query: 213 PCTPKGCIELL---------IRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVH 263
PCTP +++L + G + GK +VI RS IVG P + LL ATV V
Sbjct: 1 PCTPLAIVKILEFLKIYNNLLPEGNRLYGKKCIVINRSEIVGRPLAALLANDGATVYSVD 60
Query: 264 ALTKN-------------------------PEQITSEADIVIAAAGVAN-LVRGSWLKPG 297
++ + ++D+VI N ++K G
Sbjct: 61 VNNIQKFTRGESLKLNKHHVEDLGEYSEDLLKKCSLDSDVVITGVPSENYKFPTEYIKEG 120
Query: 298 AVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNT 357
AV ++ ++ AS+ P+ G V T+AMLL N
Sbjct: 121 AVCINFACT------------------KNFSDDVKEKASLYVPMTGKV---TIAMLLRNM 159
Query: 358 LDSAKR 363
L +
Sbjct: 160 LRLVRN 165
>d1b0aa2 c.58.1.2 (A:2-122) Tetrahydrofolate
dehydrogenase/cyclohydrolase {Escherichia coli [TaxId:
562]}
Length = 121
Score = 120 bits (301), Expect = 5e-34
Identities = 54/120 (45%), Positives = 80/120 (66%)
Query: 74 ATVIDGKSIAEEIRSGIDKEVRRMKKSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVG 133
A +IDGK+IA+++RS + ++V+ + + PGLAV+LVG SQ YV +K KACEEVG
Sbjct: 2 AKIIDGKTIAQQVRSEVAQKVQARIAAGLRAPGLAVVLVGSNPASQIYVASKRKACEEVG 61
Query: 134 IKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDG 193
S + + +E E+L + N D++I+GILVQLPLP +D K+L+ + +KDVDG
Sbjct: 62 FVSRSYDLPETTSEAELLELIDTLNADNTIDGILVQLPLPAGIDNVKVLERIHPDKDVDG 121
>d1a4ia2 c.58.1.2 (A:2-126) Tetrahydrofolate
dehydrogenase/cyclohydrolase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 125
Score = 119 bits (299), Expect = 1e-33
Identities = 47/123 (38%), Positives = 81/123 (65%), Gaps = 3/123 (2%)
Query: 74 ATVIDGKSIAEEIRSGIDKEVRRMK-KSIGKVPGLAVILVGERRDSQTYVRNKIKACEEV 132
A +++GK I+ +IR+ + +V ++K + G P LA++ VG R DS Y+ K+KA EE+
Sbjct: 3 AEILNGKEISAQIRARLKNQVTQLKEQVPGFTPRLAILQVGNRDDSNLYINVKLKAAEEI 62
Query: 133 GIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQH--LDEGKILDAVSLEKD 190
GIK+ + TE EV+ +++ N+DS+++G LVQLPL ++ ++++A++ EKD
Sbjct: 63 GIKATHIKLPRTTTESEVMKYITSLNEDSTVHGFLVQLPLDSENSINTEEVINAIAPEKD 122
Query: 191 VDG 193
VDG
Sbjct: 123 VDG 125
>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine
methyltransferase {Red algae (Galdieria sulphuraria)
[TaxId: 130081]}
Length = 282
Score = 29.7 bits (65), Expect = 0.52
Identities = 9/55 (16%), Positives = 17/55 (30%)
Query: 275 EADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYE 329
EA + + L L+ A LD+G + ++G +
Sbjct: 46 EASLRTDEWLASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAP 100
>d1wj7a1 a.5.2.1 (A:8-98) Ubiquitin-associated protein 2-like Ubap2l
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 91
Score = 27.2 bits (60), Expect = 1.0
Identities = 11/42 (26%), Positives = 20/42 (47%), Gaps = 4/42 (9%)
Query: 130 EEVGIKSIVTEFAD--GCTEDEVLNAL--SNYNQDSSINGIL 167
+ + V + D G +DE + AL N + + +IN +L
Sbjct: 28 NDADFEEKVKQLIDITGKNQDECVIALHDCNGDVNRAINVLL 69
>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 237
Score = 28.2 bits (62), Expect = 1.3
Identities = 10/60 (16%), Positives = 23/60 (38%)
Query: 231 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVR 290
+ ++ +V G + +GL + L V++ H + P+ + V + V
Sbjct: 6 VSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAPKGLFGVEVDVTDSDAVDRAFT 65
>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase,
N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}
Length = 268
Score = 27.7 bits (60), Expect = 2.4
Identities = 12/30 (40%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 233 KNAVVIGRSNIVGLPTSLLLQRHHATVSIV 262
K VV+G S ++GL ++L+L R +V I+
Sbjct: 7 KRVVVLG-SGVIGLSSALILARKGYSVHIL 35
>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus
thermophilus [TaxId: 274]}
Length = 248
Score = 26.7 bits (59), Expect = 4.7
Identities = 9/56 (16%), Positives = 19/56 (33%), Gaps = 1/56 (1%)
Query: 232 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVAN 287
GK +V G + +G + R A V + L +++ + +
Sbjct: 5 GKGVLVTGGARGIGRAIAQAFAREGALV-ALCDLRPEGKEVAEAIGGAFFQVDLED 59
>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase
{Pseudomonas fragi [TaxId: 296]}
Length = 260
Score = 26.3 bits (57), Expect = 5.4
Identities = 21/106 (19%), Positives = 36/106 (33%), Gaps = 6/106 (5%)
Query: 232 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRG 291
GK AVV G ++ +GL + L A + +++ E A +
Sbjct: 4 GKVAVVTGSTSGIGLGIATALAAQGADI-VLNGFGDAAEIEKVRAGLAAQHGVKVLYDGA 62
Query: 292 SWLKPGAVVLDVGTC-----PVDVSVDPSCEYGYRLMGDVCYEEAM 332
K AV V +D+ V+ + L+ D E+
Sbjct: 63 DLSKGEAVRGLVDNAVRQMGRIDILVNNAGIQHTALIEDFPTEKWD 108
>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin
dehydrogenase {Methylobacterium extorquens [TaxId: 408]}
Length = 191
Score = 26.0 bits (56), Expect = 5.6
Identities = 12/43 (27%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 215 TPKGCIELLIR-SGVEIMGKNAVVIGRSNIVGLPTSLLLQRHH 256
T + L+++ +G + GK AVV+ + VG+ ++ LL
Sbjct: 5 TAAAGVALVVKAAGGSVKGKKAVVLAGTGPVGMRSAALLAGEG 47
>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis
elegans [TaxId: 6239]}
Length = 274
Score = 26.2 bits (57), Expect = 6.2
Identities = 17/72 (23%), Positives = 33/72 (45%), Gaps = 10/72 (13%)
Query: 232 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRG 291
GK+ ++ G SN +G +++ + A V+I +N +++ ++ A A +
Sbjct: 4 GKSVIITGSSNGIGRSAAVIFAKEGAQVTITG---RNEDRLEETKQQILKAGVPAEKIN- 59
Query: 292 SWLKPGAVVLDV 303
AVV DV
Sbjct: 60 ------AVVADV 65
>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima
[TaxId: 2336]}
Length = 251
Score = 26.2 bits (57), Expect = 7.3
Identities = 13/54 (24%), Positives = 23/54 (42%), Gaps = 3/54 (5%)
Query: 232 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGV 285
G+ A+V G S +G + L +V + +N E+ + A + GV
Sbjct: 5 GRVALVTGGSRGLGFGIAQGLAEAGCSVVVAS---RNLEEASEAAQKLTEKYGV 55
>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli
[TaxId: 562]}
Length = 245
Score = 26.1 bits (56), Expect = 7.5
Identities = 11/40 (27%), Positives = 20/40 (50%)
Query: 285 VANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMG 324
A L R +KPG +LD+G+ ++ + ++G G
Sbjct: 22 YATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTG 61
>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase
{Thermotoga maritima [TaxId: 2336]}
Length = 234
Score = 25.8 bits (56), Expect = 7.8
Identities = 10/51 (19%), Positives = 20/51 (39%), Gaps = 3/51 (5%)
Query: 232 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAA 282
K +V+ S +G + +L + A V+I +N E + +
Sbjct: 4 DKGVLVLAASRGIGRAVADVLSQEGAEVTICA---RNEELLKRSGHRYVVC 51
>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 244
Score = 25.7 bits (56), Expect = 8.6
Identities = 10/52 (19%), Positives = 17/52 (32%)
Query: 232 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAA 283
G+ +V G +G T L A V V + + + E +
Sbjct: 7 GRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVRECPGIEPVC 58
>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB
{Escherichia coli [TaxId: 562]}
Length = 182
Score = 25.3 bits (54), Expect = 9.4
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 218 GCIELLIRSGVEIMGKNAVVIG 239
G I + SG +I GK V++G
Sbjct: 4 GHIRAIKESGFDIKGKTMVLLG 25
>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus
bisporus) [TaxId: 5341]}
Length = 260
Score = 25.4 bits (55), Expect = 9.8
Identities = 10/55 (18%), Positives = 23/55 (41%), Gaps = 3/55 (5%)
Query: 231 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGV 285
+ K +V G + +GL + + A V++++ ++ + V GV
Sbjct: 8 VNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIY---RSAADAVEVTEKVGKEFGV 59
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.136 0.404
Gapped
Lambda K H
0.267 0.0519 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,388,716
Number of extensions: 65826
Number of successful extensions: 340
Number of sequences better than 10.0: 1
Number of HSP's gapped: 327
Number of HSP's successfully gapped: 54
Length of query: 368
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 281
Effective length of database: 1,213,086
Effective search space: 340877166
Effective search space used: 340877166
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.7 bits)