BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017680
(368 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5XF06|TI442_ARATH Mitochondrial import inner membrane translocase subunit TIM44-2
OS=Arabidopsis thaliana GN=TIM44-2 PE=1 SV=1
Length = 469
Score = 511 bits (1317), Expect = e-144, Method: Compositional matrix adjust.
Identities = 246/371 (66%), Positives = 303/371 (81%), Gaps = 12/371 (3%)
Query: 2 EAESTVKKVSASMKEKISAATEEVKGTFRTGSTDTSAKHDDDVRDGFKASSGEEKQKQTV 61
EAES KKVS+S+K+K SAATEEVK +F+ G +++ G + GE++Q+Q+
Sbjct: 107 EAESVAKKVSSSVKDKFSAATEEVKESFKLGKEESAESA---SSSGTGTTEGEKQQQQSG 163
Query: 62 SSDTAETFYGKLKSSISSPKFTLAFQKLKEAKVVDLAKKGYDIVKDELSGSPSKRKHLEY 121
S++ +TF+GK KSSISSPK + AF K +D AKKG DIVKDEL G+PSKRKHLEY
Sbjct: 164 STEEQDTFFGKFKSSISSPKLSEAFHK-----PLDFAKKGLDIVKDELRGNPSKRKHLEY 218
Query: 122 TPSPSWTGEKSTRTDLVVTPSKKSMWSK----LKEKMQGYPVFKRITGISEPVVTKGQEI 177
TP P +TGE+STRT++V+ P+K+S W K L+EKMQGYPVFKR++G+SEPVV K QEI
Sbjct: 219 TPPPPFTGERSTRTEMVIMPTKQSKWQKKWESLREKMQGYPVFKRLSGMSEPVVNKSQEI 278
Query: 178 AEDVRERWETSDNPIVHKIQDMNETIFQETDAAASIKEIRRRDPSFSLPDFVSEVQEAIR 237
AEDVRE+WETSDNPIVHKIQDMNE IF+ET +A++ KEIRRRDPSFSLPDFVSE+QEAIR
Sbjct: 279 AEDVREKWETSDNPIVHKIQDMNERIFEETGSASTYKEIRRRDPSFSLPDFVSEIQEAIR 338
Query: 238 PVLSAYMKGDVETLKKYCSPEVIERCKAEHTAYQSHGIFFDNRILHVSEVEVRETKMMGS 297
PVL+AY KGD +TLKKYCS E+IERC AEH A+ S G FFD+++LHVSEV+++ETKMMG+
Sbjct: 339 PVLNAYSKGDAKTLKKYCSKELIERCTAEHRAFTSQGYFFDHKLLHVSEVDIQETKMMGT 398
Query: 298 SPIIIVAFQTQQIYCVRDKHGTITEGGKDTIQTVYYAWAMQQVDAEELGEDVLYPIWKLR 357
+P+IIV FQTQ+I+CVRD+ G I EGG+DTI TVYY WAMQQVDA ELGED +YPIW+LR
Sbjct: 399 TPVIIVRFQTQEIFCVRDQDGKIKEGGQDTIHTVYYDWAMQQVDAAELGEDAIYPIWRLR 458
Query: 358 EMQQLGVQALI 368
EM + GVQALI
Sbjct: 459 EMLRAGVQALI 469
>sp|Q1PF33|TI441_ARATH Mitochondrial import inner membrane translocase subunit TIM44-1
OS=Arabidopsis thaliana GN=TIM44-1 PE=2 SV=1
Length = 474
Score = 483 bits (1242), Expect = e-135, Method: Compositional matrix adjust.
Identities = 232/371 (62%), Positives = 292/371 (78%), Gaps = 9/371 (2%)
Query: 2 EAESTVKKVSASMKEKISAATEEVKGTFRTGSTDTSAKHDDDVRDGFKASSGEEKQKQTV 61
EAES KKVS+S+K+K+SAA+EEVK +F+ G + + + G +AS GE ++Q+
Sbjct: 109 EAESAAKKVSSSVKDKLSAASEEVKESFKLGKEENA---ESASSSGTRASQGE--KQQSG 163
Query: 62 SSDTAETFYGKLKSSISSPKFTLAFQKLKEAKVVDLAKKGYDIVKDELSGSPSKRKHLEY 121
S++ TF+ K KSS+SSPK + F +LKEAK D+ K+ DIVKDEL G+PS++K LE+
Sbjct: 164 STEELHTFFAKFKSSLSSPKVSEVFYRLKEAKPFDIVKQALDIVKDELRGNPSRKKFLEH 223
Query: 122 TPSPSWTGEKSTRTDLVVTPSKKSM----WSKLKEKMQGYPVFKRITGISEPVVTKGQEI 177
TP P +TGE+S RT++VVT +K+S W +EKMQG PVFKR++G+SEPVV K QEI
Sbjct: 224 TPPPPFTGERSMRTEMVVTQTKQSKLQQKWESFREKMQGSPVFKRLSGMSEPVVNKSQEI 283
Query: 178 AEDVRERWETSDNPIVHKIQDMNETIFQETDAAASIKEIRRRDPSFSLPDFVSEVQEAIR 237
AEDVRE WETSDNPIVHKIQDMNE +ETD+A++ KEIR RDPSFSLPDF +E++E I+
Sbjct: 284 AEDVREIWETSDNPIVHKIQDMNEKFLKETDSASTYKEIRSRDPSFSLPDFAAEIEEVIK 343
Query: 238 PVLSAYMKGDVETLKKYCSPEVIERCKAEHTAYQSHGIFFDNRILHVSEVEVRETKMMGS 297
PVL+AY +GDVETLKKYCS EVIERC AE TAYQ+HG+ FDN++LH+SEV V TKMMG
Sbjct: 344 PVLNAYSEGDVETLKKYCSKEVIERCTAERTAYQTHGVLFDNKLLHISEVSVSVTKMMGD 403
Query: 298 SPIIIVAFQTQQIYCVRDKHGTITEGGKDTIQTVYYAWAMQQVDAEELGEDVLYPIWKLR 357
SPIII FQTQ+IYCVRD++G I EGG+DTI TVY+ WAMQQV+ ELGED +YPIW+LR
Sbjct: 404 SPIIIAKFQTQEIYCVRDENGEIQEGGQDTIHTVYHEWAMQQVETTELGEDAIYPIWRLR 463
Query: 358 EMQQLGVQALI 368
EM + GVQALI
Sbjct: 464 EMCRNGVQALI 474
>sp|O35857|TIM44_MOUSE Mitochondrial import inner membrane translocase subunit TIM44
OS=Mus musculus GN=Timm44 PE=2 SV=2
Length = 452
Score = 94.4 bits (233), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 99/188 (52%), Gaps = 12/188 (6%)
Query: 180 DVRERWETSDNPIVH-------KIQDMNETIFQETDAAASIKEIRRRDPSFSLPDFVSEV 232
+++ +++ SDN ++ K+ D+ +F +T+ + + EI R DP+F F+ +
Sbjct: 260 EMKMKYDESDNVLIRASRALTDKVTDLLGGLFSKTEMSEVLTEILRVDPTFDKDHFLHQC 319
Query: 233 QEAIRP-VLSAYMKGDVETLKKYCSPEVIERCKAEHTAYQSHGIFFDNRILHVSEVEVRE 291
+ I P +L A + G+++ LK +C + ++ G F +RIL +S V++
Sbjct: 320 ETDIIPNILEAMISGELDILKDWCYEATYSQLAHPIQQAKALGFQFHSRILDISNVDLAM 379
Query: 292 TKMMGSSPIIIVAFQTQQIYCVRDKHGTITEGGKDTIQTVYYAWAMQQVDAEELGEDVLY 351
KMM P++IV FQ Q + +++ G + +G D +Q + Y WA+ + D EEL Y
Sbjct: 380 GKMMEQGPVLIVTFQAQVVMVIKNSKGEVYDGDPDKVQRMLYVWALCR-DQEELNP---Y 435
Query: 352 PIWKLREM 359
W+L ++
Sbjct: 436 AAWRLLDI 443
>sp|O43615|TIM44_HUMAN Mitochondrial import inner membrane translocase subunit TIM44
OS=Homo sapiens GN=TIMM44 PE=1 SV=2
Length = 452
Score = 93.2 bits (230), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 97/188 (51%), Gaps = 12/188 (6%)
Query: 180 DVRERWETSDNPIVH-------KIQDMNETIFQETDAAASIKEIRRRDPSFSLPDFVSEV 232
+++ +++ SDN + K+ D+ +F +T+ + + EI R DP+F F+ +
Sbjct: 260 EMKMKYDESDNAFIRASRALTDKVTDLLGGLFSKTEMSEVLTEILRVDPAFDKDRFLKQC 319
Query: 233 QEAIRP-VLSAYMKGDVETLKKYCSPEVIERCKAEHTAYQSHGIFFDNRILHVSEVEVRE 291
+ I P VL A + G+++ LK +C + ++ G+ F +RIL + V++
Sbjct: 320 ENDIIPNVLEAMISGELDILKDWCYEATYSQLAHPIQQAKALGLQFHSRILDIDNVDLAM 379
Query: 292 TKMMGSSPIIIVAFQTQQIYCVRDKHGTITEGGKDTIQTVYYAWAMQQVDAEELGEDVLY 351
KMM P++I+ FQ Q + VR+ G + EG D + + Y WA+ + D +EL Y
Sbjct: 380 GKMMEQGPVLIITFQAQLVMVVRNPKGEVVEGDPDKVLRMLYVWALCR-DQDELNP---Y 435
Query: 352 PIWKLREM 359
W+L ++
Sbjct: 436 AAWRLLDI 443
>sp|O35094|TIM44_RAT Mitochondrial import inner membrane translocase subunit TIM44
OS=Rattus norvegicus GN=Timm44 PE=2 SV=1
Length = 453
Score = 92.8 bits (229), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 99/188 (52%), Gaps = 12/188 (6%)
Query: 180 DVRERWETSDNPIVH-------KIQDMNETIFQETDAAASIKEIRRRDPSFSLPDFVSEV 232
+++ +++ SDN ++ K+ D+ +F +T+ + + EI R DP+F F+ +
Sbjct: 261 EMKMKYDESDNVLIRASRALTDKVTDLLGGLFSKTEMSEVLTEILRVDPTFDKDRFLHQC 320
Query: 233 QEAIRP-VLSAYMKGDVETLKKYCSPEVIERCKAEHTAYQSHGIFFDNRILHVSEVEVRE 291
+ I P +L A + G+++ LK +C + ++ G+ F +RIL +S V++
Sbjct: 321 ETDIIPNILEAMISGELDILKDWCYEATYNQLAHSIQQAKALGLQFHSRILDISNVDLAM 380
Query: 292 TKMMGSSPIIIVAFQTQQIYCVRDKHGTITEGGKDTIQTVYYAWAMQQVDAEELGEDVLY 351
KMM P++IV FQ Q + +++ G + +G D + + Y WA+ + D EEL Y
Sbjct: 381 GKMMEQGPVLIVTFQAQLVMVIKNPKGEVFDGDPDKVLRMLYVWALCR-DQEELNP---Y 436
Query: 352 PIWKLREM 359
W+L ++
Sbjct: 437 AAWRLLDI 444
>sp|O60084|TIM44_SCHPO Mitochondrial import inner membrane translocase subunit tim44
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=tim44 PE=3 SV=1
Length = 427
Score = 85.5 bits (210), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 94/176 (53%), Gaps = 11/176 (6%)
Query: 179 EDVRERWETSDNPIVHKIQDMNETI-------FQETDAAASIKEIRRRDPSFSLPDFVSE 231
+++++ ++ S++PIV I+DM ++I F ET+A+ ++ + DPSF+ F+
Sbjct: 229 QELKKSYQESEHPIVSSIRDMADSISGVWSRMFSETEASQVMRRFKEIDPSFNTEHFLQY 288
Query: 232 VQEAIRP-VLSAYMKGDVETLKKYCSPEVIERCKAEHTAYQSHGIFFDNRILHVSEVEVR 290
++E I P V AY+KGD E LK + S + Y HG+ +IL + V++
Sbjct: 289 LREYIVPEVTEAYVKGDKEVLKTWLSEAPFSVYETTTKEYAKHGVVSVGKILDIRGVDIM 348
Query: 291 ETKMMGSS--PIIIVAFQTQQIYCVRD-KHGTITEGGKDTIQTVYYAWAMQQVDAE 343
+++ + P+ IV F+TQ+++ +D G + G D IQ YA +V+ E
Sbjct: 349 SQRLLQPNDIPVFIVTFRTQEVHMFKDASSGELVAGKDDRIQQCTYASVFTRVEDE 404
>sp|Q01852|TIM44_YEAST Mitochondrial import inner membrane translocase subunit TIM44
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=TIM44 PE=1 SV=1
Length = 431
Score = 82.0 bits (201), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 55/186 (29%), Positives = 93/186 (50%), Gaps = 9/186 (4%)
Query: 185 WETSDNPIV---HKIQDMNETIFQETDAAASIKEIRRRDPSFSLPDFVSEVQEAIRP-VL 240
W+ S+NP++ KI + F ET+++ + + DP+FS F ++E I P +L
Sbjct: 243 WDESENPLIVVMRKITNKVGGFFAETESSRVYSQFKLMDPTFSNESFTRHLREYIVPEIL 302
Query: 241 SAYMKGDVETLKKYCSPEVIERCKAEHTAYQSHGIFFDNRILHVSEVEVRETKMMGSS-- 298
AY+KGDV+ LKK+ S A+ ++ ++ D RIL + VE+ K++
Sbjct: 303 EAYVKGDVKVLKKWFSEAPFNVYAAQQKIFKEQDVYADGRILDIRGVEIVSAKLLAPQDI 362
Query: 299 PIIIVAFQTQQIYCVRDKH-GTITEGGKDTIQTVYYAWAMQQVDAEELGEDVLYPIWKLR 357
P+++V + Q+I R K G I G + I YA + D E++ +D WK+
Sbjct: 363 PVLVVGCRAQEINLYRKKKTGEIAAGDEANILMSSYAMVFTR-DPEQIDDDETEG-WKIL 420
Query: 358 EMQQLG 363
E + G
Sbjct: 421 EFVRGG 426
>sp|O02161|TIM44_CAEEL Probable mitochondrial import inner membrane translocase subunit
tim-44 OS=Caenorhabditis elegans GN=tim-44 PE=3 SV=1
Length = 425
Score = 68.6 bits (166), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 94/187 (50%), Gaps = 10/187 (5%)
Query: 180 DVRERWETSDNPIVHKIQDMNE---TIFQ-ETDAAASIKEIRRRDPSFSLPDFVSEVQEA 235
D + +++ SDN V ++ + E ++F + + + + EI + D +F +++ +
Sbjct: 235 DWKIKYDESDNMAVRMMRGVTEKIGSVFSGQNEVSEVLTEIHKIDANFDKQEWLRFCETK 294
Query: 236 IRP-VLSAYMKGDVETLKKYCSPEVIERCKAEHTAYQS-HGIFFDNRILHVSEVEVRETK 293
I P +L A+++ D+E L+ +C + YQ H D+RI+ +++VE+ K
Sbjct: 295 IIPNILEAFIRFDLEVLQSWCHERAYTQLSTVVKEYQKMHFSTKDSRIIDINKVEMATGK 354
Query: 294 MMGSSPIIIVAFQTQQIYCVRDKHGTITEGGKDTIQTVYYAWAMQQVDAEELGEDVLYPI 353
MM P++I++FQ I ++ G + EG D + + + W + + D EE +
Sbjct: 355 MMEQGPVLIISFQVYMINVTKNADGKVVEGDPDNPKRINHIWVLCR-DVEEYNPAL---A 410
Query: 354 WKLREMQ 360
WKL E+
Sbjct: 411 WKLLEVH 417
>sp|Q9VCX3|RM45_DROME Probable 39S ribosomal protein L45, mitochondrial OS=Drosophila
melanogaster GN=mRpL45 PE=2 SV=1
Length = 361
Score = 38.5 bits (88), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 31/143 (21%), Positives = 67/143 (46%), Gaps = 14/143 (9%)
Query: 201 ETIFQETDAAASIKEIRRRDPSFSLPDFVSEVQEAIRPVLSAYMKGDVETLKKY----CS 256
E + +++ + ++++IR D +FS DF +E Q+ + D ++++ C
Sbjct: 141 EFLEKKSKSLMAVRKIRSYDENFSSDDFGAEAQDIYIQAHTHMAAKDKYKIREFVSERCY 200
Query: 257 PEVIERCKAEHTAYQSHGIFFDNRILH--VSEVEVRETKMMGSSPIIIVAFQTQQIYCVR 314
PE++ K + ++ R++H V+EV +E + + V F +QQ+ +
Sbjct: 201 PEMMHNVKDKTIRWKFLQSLEPPRVVHARVTEVITKENQFAQ----VTVRFHSQQMLAIY 256
Query: 315 DKHGTITEGG----KDTIQTVYY 333
D+ G + G KD ++ V +
Sbjct: 257 DRFGRLMHGSEIITKDVLEYVVF 279
>sp|Q13535|ATR_HUMAN Serine/threonine-protein kinase ATR OS=Homo sapiens GN=ATR PE=1
SV=3
Length = 2644
Score = 36.6 bits (83), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 67/145 (46%), Gaps = 16/145 (11%)
Query: 111 GSPSKRKHLEYTPSPSWTGEKSTRTDLVVTPSKKS-MWSKLKEKMQGYPVFKRITGISEP 169
G KR+ L + +PS K T V ++KS +WS LK+K + + +G+ P
Sbjct: 426 GISPKRRRLSSSLNPSKRAPKQTEEIKHVDMNQKSILWSALKQKAESLQISLEYSGLKNP 485
Query: 170 VVTKGQEIAEDVRERWETSDNPIVH-KIQDMNETIFQETDAAASIKEIRRRDPSFSLP-- 226
V+ E+ E + + + VH Q+MN F++ + ++ PS +
Sbjct: 486 VI----EMLEGIAVVLQLTALCTVHCSHQNMNCRTFKDCQHKS------KKKPSVVITWM 535
Query: 227 --DFVSEVQEAIRPVLSAYMKGDVE 249
DF ++V ++ R +L + K D+E
Sbjct: 536 SLDFYTKVLKSCRSLLESVQKLDLE 560
>sp|Q311X7|GUAA_DESDG GMP synthase [glutamine-hydrolyzing] OS=Desulfovibrio desulfuricans
(strain G20) GN=guaA PE=3 SV=1
Length = 516
Score = 35.0 bits (79), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 46/203 (22%), Positives = 81/203 (39%), Gaps = 39/203 (19%)
Query: 101 GYDIVKDELSGSPSKRKHLEYTP--------SPSWTGEKSTRTDLVVTPSKKSMWSKLKE 152
G ++ L G S + EY P SP W G K+ + V W +
Sbjct: 85 GMQLLAHNLGGELSCSETREYGPADLKFCAGSPLWDGLKTDESSRV--------WMSHGD 136
Query: 153 KMQGYPVFKRITGISEPVVTKGQEIAEDVRERWETSDNPIVHKIQDMNETIFQETDAAAS 212
+++ P +TG +E + +A+D R + +P VH +D + A
Sbjct: 137 RVKKVPAGFTVTGSTETLEVAA--MADDQRRIYAVQFHPEVHHSEDGVRMLHNFLFKIAG 194
Query: 213 IKEIRRRDPSFSLPDF----VSEVQEAIRP---VLSAYMKGDVETLKKYCSPEVIERCKA 265
IK +S+ F + EV E + P V+ A + G +++ V+
Sbjct: 195 IKA------DWSMSSFCERVIKEVSEQVGPDDQVVCA-LSGGIDS-------TVVAVLLH 240
Query: 266 EHTAYQSHGIFFDNRILHVSEVE 288
+ ++ H IF DN +L ++EV+
Sbjct: 241 KAIGHRLHCIFVDNGVLRLNEVD 263
>sp|Q0VBM2|FA83B_MOUSE Protein FAM83B OS=Mus musculus GN=Fam83b PE=1 SV=1
Length = 1012
Score = 33.5 bits (75), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 40/74 (54%), Gaps = 5/74 (6%)
Query: 103 DIVKDELSGSPSKRKHLEYTPSPSWTGEKSTRTDLVVTPSKKSMWSKLKEKMQGYPVFKR 162
D+ K+E + P+ +K + +PS G + R+ L +TP K+ +K K P F R
Sbjct: 745 DVNKEEPNKEPNSKKEGKASPSFLKKGSQKLRSLLSLTPEKRESLAKNKA-----PAFYR 799
Query: 163 ITGISEPVVTKGQE 176
+ S+ +V++G+E
Sbjct: 800 MCSSSDTLVSEGEE 813
>sp|Q5T0W9|FA83B_HUMAN Protein FAM83B OS=Homo sapiens GN=FAM83B PE=1 SV=1
Length = 1011
Score = 32.7 bits (73), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 40/74 (54%), Gaps = 5/74 (6%)
Query: 103 DIVKDELSGSPSKRKHLEYTPSPSWTGEKSTRTDLVVTPSKKSMWSKLKEKMQGYPVFKR 162
D+ K+E + + +K ++ +PS G + R+ L +TP KK SK K P F R
Sbjct: 745 DVNKEESNKELASKKEVKGSPSFLKKGSQKLRSLLSLTPDKKENLSKNKA-----PAFYR 799
Query: 163 ITGISEPVVTKGQE 176
+ S+ +V++G+E
Sbjct: 800 LCSSSDTLVSEGEE 813
>sp|Q86WI1|PKHL1_HUMAN Fibrocystin-L OS=Homo sapiens GN=PKHD1L1 PE=2 SV=2
Length = 4243
Score = 32.0 bits (71), Expect = 6.7, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Query: 285 SEVEVRETKMMGSSPIIIVAFQTQQIYCVRDKHGTI---TEGGKDTIQTVYYAWA 336
S + T ++GS P + + I C+ G I T GKD++ + YAW+
Sbjct: 1356 STIPAENTVLLGSIPCNVTSSSENVIKCILHSTGNIFRITNNGKDSVHGLGYAWS 1410
>sp|Q6F7W6|YBEY_ACIAD Endoribonuclease YbeY OS=Acinetobacter sp. (strain ADP1) GN=ybeY
PE=3 SV=1
Length = 159
Score = 31.6 bits (70), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 7/69 (10%)
Query: 215 EIRRRDPSFSLPDFVSEVQEAIRPVLSAYMKGDVETLKKYCSPEVIERCKAEHTAYQSHG 274
E R +D S ++ F S++ E + P+L A GD+ C P V++ +H Q+H
Sbjct: 58 EYRGKDKSTNVLSFPSDIPEEVLPLLDARPLGDL----VICIPVVLDEAIEQHKTAQAH- 112
Query: 275 IFFDNRILH 283
F + ++H
Sbjct: 113 --FMHMLVH 119
>sp|Q9QBU0|RDRP_PMTVS Replicase large subunit OS=Potato mop-top virus (isolate
Potato/Sweden/Sw) GN=rep PE=3 SV=3
Length = 1812
Score = 31.6 bits (70), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 159 VFKRITGISEPVVTKGQEIAEDVRERWETSDNPI---VHKIQDMNETIFQETDAAASI 213
V K +++ VVT G+E AED+RER+++ N + +++ ++ + +T + A++
Sbjct: 1024 VVKEANLVNQYVVTIGREAAEDLRERFKSERNATATQLKRVRTVDSYLLNDTQSRANV 1081
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.127 0.357
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 131,892,799
Number of Sequences: 539616
Number of extensions: 5499772
Number of successful extensions: 13454
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 67
Number of HSP's that attempted gapping in prelim test: 13346
Number of HSP's gapped (non-prelim): 164
length of query: 368
length of database: 191,569,459
effective HSP length: 119
effective length of query: 249
effective length of database: 127,355,155
effective search space: 31711433595
effective search space used: 31711433595
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 62 (28.5 bits)