BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017681
(368 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4FBM|A Chain A, Lips And Lipt, Two Metagenome-Derived Lipolytic Enzymes
Increase The Diversity Of Known Lipase And Esterase
Families
pdb|4FBM|B Chain B, Lips And Lipt, Two Metagenome-Derived Lipolytic Enzymes
Increase The Diversity Of Known Lipase And Esterase
Families
Length = 293
Score = 36.2 bits (82), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 50/221 (22%), Positives = 79/221 (35%), Gaps = 63/221 (28%)
Query: 101 GYDYSGYGQSTGKPSEHNTY-------------ADIEAVYKCLEESYGTKQEDIILYGQS 147
G+ +GY +T + + H T ADI A + LEE + + + + G S
Sbjct: 71 GFARAGYTVATPRLTGHGTTPAEMAASTASDWTADIVAAMRWLEE----RCDVLFMTGLS 126
Query: 148 VGSGPTLDLAARLPQLRAVVL--------HSPILSGL----------------------- 176
+G T+ A + P+ A ++ SP L+ L
Sbjct: 127 MGGALTVWAAGQFPERFAGIMPINAALRMESPDLAALAFNPDAPAELPGIGSDIKAEGVK 186
Query: 177 RVMYPVKRTYWFDIYKNIDKI-----PLVNCPVLIIHGTSDEVVDCSHGKQLWE-LCKEK 230
+ YPV I + P V CP LII D VV +G+ ++ + +
Sbjct: 187 ELAYPVTPVPAIKHLITIGAVAEMLLPRVKCPALIIQSREDHVVPPHNGELIYNGIGSTE 246
Query: 231 YEPLWLKGGNHCD---------LEHYPEYIRHLKKFVSTVE 262
E LWL+ H LE +IR K + +E
Sbjct: 247 KELLWLENSYHVATLDNDKELILERSLAFIRKHSKLAAALE 287
>pdb|4FBL|A Chain A, Lips And Lipt, Two Metagenome-Derived Lipolytic Enzymes
Increase The Diversity Of Known Lipase And Esterase
Families
pdb|4FBL|B Chain B, Lips And Lipt, Two Metagenome-Derived Lipolytic Enzymes
Increase The Diversity Of Known Lipase And Esterase
Families
pdb|4FBL|C Chain C, Lips And Lipt, Two Metagenome-Derived Lipolytic Enzymes
Increase The Diversity Of Known Lipase And Esterase
Families
pdb|4FBL|D Chain D, Lips And Lipt, Two Metagenome-Derived Lipolytic Enzymes
Increase The Diversity Of Known Lipase And Esterase
Families
Length = 281
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 44/191 (23%), Positives = 70/191 (36%), Gaps = 54/191 (28%)
Query: 101 GYDYSGYGQSTGKPSEHNTY-------------ADIEAVYKCLEESYGTKQEDIILYGQS 147
G+ +GY +T + + H T ADI A + LEE + + + + G S
Sbjct: 73 GFARAGYTVATPRLTGHGTTPAEMAASTASDWTADIVAAMRWLEE----RCDVLFMTGLS 128
Query: 148 VGSGPTLDLAARLPQLRAVVL--------HSPILSGL----------------------- 176
+G T+ A + P+ A ++ SP L+ L
Sbjct: 129 MGGALTVWAAGQFPERFAGIMPINAALRMESPDLAALAFNPDAPAELPGIGSDIKAEGVK 188
Query: 177 RVMYPVKRTYWFDIYKNIDKI-----PLVNCPVLIIHGTSDEVVDCSHGKQLWE-LCKEK 230
+ YPV I + P V CP LII D VV +G+ ++ + +
Sbjct: 189 ELAYPVTPVPAIKHLITIGAVAEMLLPRVKCPALIIQSREDHVVPPHNGELIYNGIGSTE 248
Query: 231 YEPLWLKGGNH 241
E LWL+ H
Sbjct: 249 KELLWLENSYH 259
>pdb|1IUN|A Chain A, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Hexagonal
pdb|1IUN|B Chain B, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Hexagonal
pdb|1IUO|A Chain A, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Complexed With
Acetates
pdb|1IUP|A Chain A, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Complexed With
Isobutyrates
pdb|1UK6|A Chain A, Crystal Structure Of A Meta-cleavage Product Hydrolase
(cumd) Complexed With Propionate
pdb|1UK7|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) Complexed With N-Butyrate
pdb|1UK8|A Chain A, Crystal Structure Of A Meta-cleavage Product Hydrolase
(cumd) Complexed With N-valerate
pdb|1UK9|A Chain A, Crystal Structure Of A Meta-cleavage Product Hydrolase
(cumd) Complexed With Isovalerate
pdb|1UKA|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) Complexed With (S)-2-Methylbutyrate
pdb|1UKB|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) Complexed With Benzoate
Length = 282
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
Query: 179 MYPVKRTYWFDIYKNIDK-IPLVNCPVLIIHGTSDEVVDCSHGKQLWELCKEKYEPLWLK 237
M+P R W D + D+ I + LIIHG D+VV S +L EL ++ +
Sbjct: 190 MFPEPRQRWIDALASSDEDIKTLPNETLIIHGREDQVVPLSSSLRLGELIDRAQLHVFGR 249
Query: 238 GGNHCDLEHYPEYIRHLKKFVS 259
G+ +E + R + +F +
Sbjct: 250 CGHWTQIEQTDRFNRLVVEFFN 271
>pdb|2D0D|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) A129v Mutant
Length = 282
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
Query: 179 MYPVKRTYWFDIYKNIDK-IPLVNCPVLIIHGTSDEVVDCSHGKQLWELCKEKYEPLWLK 237
M+P R W D + D+ I + LIIHG D+VV S +L EL ++ +
Sbjct: 190 MFPEPRQRWIDALASSDEDIKTLPNETLIIHGREDQVVPLSSSLRLGELIDRAQLHVFGR 249
Query: 238 GGNHCDLEHYPEYIRHLKKFVS 259
G+ +E + R + +F +
Sbjct: 250 CGHWTQIEQTDRFNRLVVEFFN 271
>pdb|3HJU|A Chain A, Crystal Structure Of Human Monoglyceride Lipase
pdb|3HJU|B Chain B, Crystal Structure Of Human Monoglyceride Lipase
Length = 342
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 51/111 (45%), Gaps = 10/111 (9%)
Query: 69 STLLYSHGNAADLGQMYELFIQLSIHLRVNLMGYDYSGYGQSTGKPSEHNTYADIEAVYK 128
+ + SHG G+ YE ++ + L + + +D+ G+GQS G E +D +
Sbjct: 61 ALIFVSHGAGEHSGR-YEELARMLMGLDLLVFAHDHVGHGQSEG---ERMVVSDFHVFVR 116
Query: 129 CLEESYGTKQED-----IILYGQSVGSGPTLDLAARLP-QLRAVVLHSPIL 173
+ + + Q+D + L G S+G + AA P +VL SP++
Sbjct: 117 DVLQHVDSMQKDYPGLPVFLLGHSMGGAIAILTAAERPGHFAGMVLISPLV 167
>pdb|3JWE|A Chain A, Crystal Structure Of Human Mono-Glyceride Lipase In
Complex With Sar629
pdb|3JWE|B Chain B, Crystal Structure Of Human Mono-Glyceride Lipase In
Complex With Sar629
Length = 320
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 51/111 (45%), Gaps = 10/111 (9%)
Query: 69 STLLYSHGNAADLGQMYELFIQLSIHLRVNLMGYDYSGYGQSTGKPSEHNTYADIEAVYK 128
+ + SHG G+ YE ++ + L + + +D+ G+GQS G E +D +
Sbjct: 60 ALIFVSHGAGEHSGR-YEELARMLMGLDLLVFAHDHVGHGQSEG---ERMVVSDFHVFVR 115
Query: 129 CLEESYGTKQED-----IILYGQSVGSGPTLDLAARLP-QLRAVVLHSPIL 173
+ + + Q+D + L G S+G + AA P +VL SP++
Sbjct: 116 DVLQHVDSMQKDYPGLPVFLLGHSMGGAIAILTAAERPGHFAGMVLISPLV 166
>pdb|3PE6|A Chain A, Crystal Structure Of A Soluble Form Of Human Mgll In
Complex With An Inhibitor
Length = 303
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 51/111 (45%), Gaps = 10/111 (9%)
Query: 69 STLLYSHGNAADLGQMYELFIQLSIHLRVNLMGYDYSGYGQSTGKPSEHNTYADIEAVYK 128
+ + SHG G+ YE ++ + L + + +D+ G+GQS G E +D +
Sbjct: 43 ALIFVSHGAGEHSGR-YEELARMLMGLDLLVFAHDHVGHGQSEG---ERMVVSDFHVFVR 98
Query: 129 CLEESYGTKQED-----IILYGQSVGSGPTLDLAARLP-QLRAVVLHSPIL 173
+ + + Q+D + L G S+G + AA P +VL SP++
Sbjct: 99 DVLQHVDSMQKDYPGLPVFLLGHSMGGAIAILTAAERPGHFAGMVLISPLV 149
>pdb|4G5X|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
pdb|4G5X|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
pdb|4G9E|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
Complexed With N-butanoyl Homoserine
pdb|4G9E|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
Complexed With N-butanoyl Homoserine
Length = 279
Score = 32.7 bits (73), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 23/102 (22%), Positives = 51/102 (50%), Gaps = 3/102 (2%)
Query: 68 SSTLLYSHGNAADLGQMYELFIQLSIHLRVNLMGYDYSGYGQSTGKPSEHNTYADIEAVY 127
+ LL HGN++ G ++ ++ I + ++ D G+G+ST +Y+ +E
Sbjct: 24 GAPLLMIHGNSSS-GAIFAPQLEGEIGKKWRVIAPDLPGHGKSTDAIDPDRSYS-MEGYA 81
Query: 128 KCLEESYGT-KQEDIILYGQSVGSGPTLDLAARLPQLRAVVL 168
+ E D +++G S+G +++ AR P++R +++
Sbjct: 82 DAMTEVMQQLGIADAVVFGWSLGGHIGIEMIARYPEMRGLMI 123
>pdb|4G8C|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
E219g Mutant Complexed With N-hexanoyl Homoserine
pdb|4G8C|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
E219g Mutant Complexed With N-hexanoyl Homoserine
pdb|4G9G|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
E219g Mutant
pdb|4G9G|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
E219g Mutant
Length = 279
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 23/102 (22%), Positives = 51/102 (50%), Gaps = 3/102 (2%)
Query: 68 SSTLLYSHGNAADLGQMYELFIQLSIHLRVNLMGYDYSGYGQSTGKPSEHNTYADIEAVY 127
+ LL HGN++ G ++ ++ I + ++ D G+G+ST +Y+ +E
Sbjct: 24 GAPLLMIHGNSSS-GAIFAPQLEGEIGKKWRVIAPDLPGHGKSTDAIDPDRSYS-MEGYA 81
Query: 128 KCLEESYGT-KQEDIILYGQSVGSGPTLDLAARLPQLRAVVL 168
+ E D +++G S+G +++ AR P++R +++
Sbjct: 82 DAMTEVMQQLGIADAVVFGWSLGGHIGIEMIARYPEMRGLMI 123
>pdb|3KXP|A Chain A, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|B Chain B, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|C Chain C, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|D Chain D, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|E Chain E, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|F Chain F, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|G Chain G, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|H Chain H, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|I Chain I, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|J Chain J, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|K Chain K, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|L Chain L, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
Length = 314
Score = 31.6 bits (70), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 53/115 (46%), Gaps = 14/115 (12%)
Query: 58 VAMYIRHPMASSTLLYSHGNAADLGQMYELFIQLSIHLRVNLMGYDYSGYGQSTGKPS-- 115
+ + +R + L+ HG ++ L I+LS R + D G+G S KP
Sbjct: 58 ITLNVREKGSGPLXLFFHGITSNSAVFEPLXIRLSD--RFTTIAVDQRGHGLSD-KPETG 114
Query: 116 -EHNTYAD-IEAVYKCLEESYGTKQEDIILYGQSVGSGPTLDLAARLPQL-RAVV 167
E N YAD I + + L + IL G S+G+ ++ AA+ P L R+VV
Sbjct: 115 YEANDYADDIAGLIRTLARGHA------ILVGHSLGARNSVTAAAKYPDLVRSVV 163
>pdb|3PF8|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536
pdb|3PF8|B Chain B, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536
Length = 270
Score = 31.6 bits (70), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 67/173 (38%), Gaps = 28/173 (16%)
Query: 102 YDYSGYGQSTGKPSEHNTYADIEAVYKCLEESYGTKQ-EDIILYGQSVGSGPTLDLAARL 160
+D++G+G S GK +IE L +I L G S G LA
Sbjct: 81 FDFNGHGDSDGKFENMTVLNEIEDANAILNYVKTDPHVRNIYLVGHSQGGVVASMLAGLY 140
Query: 161 PQL-RAVVLHSP--ILSG-------LRVMY---------PVKRTYWFDIYKNI-DKIPLV 200
P L + VVL +P L G V Y P K Y I ++P+
Sbjct: 141 PDLIKKVVLLAPAATLKGDALEGNTQGVTYNPDHIPDRLPFKDLTLGGFYLRIAQQLPIY 200
Query: 201 NC------PVLIIHGTSDEVVDCSHGKQLWELCKEKYEPLWLKGGNHCDLEHY 247
PV +IHGT D VV + K+ ++ + L ++G +HC + Y
Sbjct: 201 EVSAQFTKPVCLIHGTDDTVVSPNASKKYDQIYQNSTLHL-IEGADHCFSDSY 252
>pdb|3TRD|A Chain A, Structure Of An Alpha-Beta Serine Hydrolase Homologue From
Coxiella Burnetii
Length = 208
Score = 31.6 bits (70), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 61/143 (42%), Gaps = 24/143 (16%)
Query: 102 YDYSGYGQSTGK-PSEHNTYADIEAVYKCLEESYGTKQEDIILYGQSVGSGPTLDLA--A 158
+++ G G+S G+ + D++AV + +E + Q+DI L G S G+ + +A
Sbjct: 69 FNFRGVGKSQGRYDNGVGEVEDLKAVLRWVEHHW--SQDDIWLAGFSFGAYISAKVAYDQ 126
Query: 159 RLPQLRAVVLHSPILSGLRVMYPVKRTYWFDIYKNIDKIPLVNCPVLIIHGTSDEVVDCS 218
++ QL +V +P PV Y+ + + P LI+ G DEVV
Sbjct: 127 KVAQLISV---AP---------PV-------FYEGFASLTQMASPWLIVQGDQDEVVPFE 167
Query: 219 HGKQLWELCKEKYEPLWLKGGNH 241
K E + + G +H
Sbjct: 168 QVKAFVNQISSPVEFVVMSGASH 190
>pdb|3FOB|A Chain A, Crystal Structure Of Bromoperoxidase From Bacillus
Anthracis
pdb|3FOB|B Chain B, Crystal Structure Of Bromoperoxidase From Bacillus
Anthracis
pdb|3FOB|C Chain C, Crystal Structure Of Bromoperoxidase From Bacillus
Anthracis
Length = 281
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 4/71 (5%)
Query: 189 DIYKNIDKIPLVNCPVLIIHGTSDEVVDCSHGKQLWELCKEKYEPLWLKGGNH-CDLEHY 247
D K+++K N P LIIHG SD V + +L + +KGG H + H
Sbjct: 212 DFRKDLEKF---NIPTLIIHGDSDATVPFEYSGKLTHEAIPNSKVALIKGGPHGLNATHA 268
Query: 248 PEYIRHLKKFV 258
E+ L F+
Sbjct: 269 KEFNEALLLFL 279
>pdb|3PF9|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant
pdb|3PFB|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With
Ethylferulate
pdb|3PFB|B Chain B, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With
Ethylferulate
pdb|3PFC|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With Ferulic
Acid
pdb|3S2Z|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With Caffeic
Acid
pdb|3S2Z|B Chain B, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With Caffeic
Acid
Length = 270
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 67/173 (38%), Gaps = 28/173 (16%)
Query: 102 YDYSGYGQSTGKPSEHNTYADIEAVYKCLEESYGTKQ-EDIILYGQSVGSGPTLDLAARL 160
+D++G+G S GK +IE L +I L G + G LA
Sbjct: 81 FDFNGHGDSDGKFENMTVLNEIEDANAILNYVKTDPHVRNIYLVGHAQGGVVASMLAGLY 140
Query: 161 PQL-RAVVLHSP--ILSG-------LRVMY---------PVKRTYWFDIYKNI-DKIPLV 200
P L + VVL +P L G V Y P K Y I ++P+
Sbjct: 141 PDLIKKVVLLAPAATLKGDALEGNTQGVTYNPDHIPDRLPFKDLTLGGFYLRIAQQLPIY 200
Query: 201 NC------PVLIIHGTSDEVVDCSHGKQLWELCKEKYEPLWLKGGNHCDLEHY 247
PV +IHGT D VV + K+ ++ + L ++G +HC + Y
Sbjct: 201 EVSAQFTKPVCLIHGTDDTVVSPNASKKYDQIYQNSTLHL-IEGADHCFSDSY 252
>pdb|3QM1|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With
Ethylferulate, Form Ii
Length = 265
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 67/173 (38%), Gaps = 28/173 (16%)
Query: 102 YDYSGYGQSTGKPSEHNTYADIEAVYKCLEESYGTKQ-EDIILYGQSVGSGPTLDLAARL 160
+D++G+G S GK +IE L +I L G + G LA
Sbjct: 81 FDFNGHGDSDGKFENMTVLNEIEDANAILNYVKTDPHVRNIYLVGHAQGGVVASMLAGLY 140
Query: 161 PQL-RAVVLHSP--ILSG-------LRVMY---------PVKRTYWFDIYKNI-DKIPLV 200
P L + VVL +P L G V Y P K Y I ++P+
Sbjct: 141 PDLIKKVVLLAPAATLKGDALEGNTQGVTYNPDHIPDRLPFKDLTLGGFYLRIAQQLPIY 200
Query: 201 NC------PVLIIHGTSDEVVDCSHGKQLWELCKEKYEPLWLKGGNHCDLEHY 247
PV +IHGT D VV + K+ ++ + L ++G +HC + Y
Sbjct: 201 EVSAQFTKPVCLIHGTDDTVVSPNASKKYDQIYQNSTLHL-IEGADHCFSDSY 252
>pdb|4FYE|A Chain A, Crystal Structure Of A Legionella Phosphoinositide
Phosphatase, Sidf
pdb|4FYF|A Chain A, Structural Basis For Substrate Recognition By A Novel
Legionella Phosphoinositide Phosphatase
pdb|4FYG|A Chain A, Structural Basis For Substrate Recognition By A Novel
Legionella Phosphoinositide Phosphatase
Length = 761
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 50/133 (37%), Gaps = 7/133 (5%)
Query: 166 VVLHSPILSGLRVMYPVKRTYWFDIYKN--IDKIPLVNCPVLIIHGTSDEVVDCSHGKQL 223
V +H SG P D YK I + L+N +I + +D + L
Sbjct: 260 VTIHHDSFSGPGARMPYSDFKGADDYKKLAIKAVTLINQEE-VIQTLAQRQIDRMTNEDL 318
Query: 224 WELCKEKYEPLWLK-GGNHCDLEHYPEYIRHLKKFVS---TVEKSPSQRYSSRRSTDHFE 279
W E+Y P L + Y+ H V+ T + QR ++ + FE
Sbjct: 319 WNKIPEEYRPDELPPDAEKARAQLIKLYVEHNPLSVTECYTQVVTAGQRVAAENQKEQFE 378
Query: 280 QARKSTDFFEGSR 292
R+ D F+GS+
Sbjct: 379 YVRQMMDAFDGSK 391
>pdb|3VDX|A Chain A, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|3VDX|B Chain B, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|3VDX|C Chain C, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|A Chain A, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|B Chain B, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|C Chain C, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|D Chain D, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|E Chain E, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|F Chain F, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|G Chain G, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|H Chain H, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|I Chain I, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|J Chain J, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|K Chain K, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|L Chain L, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
Length = 456
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/67 (23%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Query: 185 TYWFDIYKNIDKIPLVNCPVLIIHGTSDEVVDCSHGKQLWELCKEKYEPLWLKGGNHCDL 244
T W+ ++ IP ++ P LI+HGT D + + +++ E + ++G H L
Sbjct: 204 TTWYTDFRA--DIPRIDVPALILHGTGDRTLPIENTARVFHKALPSAEYVEVEGAPHGLL 261
Query: 245 EHYPEYI 251
+ E +
Sbjct: 262 WTHAEEV 268
>pdb|1BRO|A Chain A, Bromoperoxidase A2
pdb|1BRO|B Chain B, Bromoperoxidase A2
Length = 277
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 3/76 (3%)
Query: 185 TYWFDIYKNIDKIPLVNCPVLIIHGTSDEVVDCSHGKQLWELCKEKYEPLWLKGGNHCDL 244
T W+ ++ IP ++ P LI+HGT D + + +++ E + ++G H L
Sbjct: 203 TTWYTDFRA--DIPRIDVPALILHGTGDRTLPIENTARVFHKALPSAEYVEVEGAPHGLL 260
Query: 245 -EHYPEYIRHLKKFVS 259
H E L F++
Sbjct: 261 WTHAEEVNTALLAFLA 276
>pdb|3JW8|A Chain A, Crystal Structure Of Human Mono-Glyceride Lipase
pdb|3JW8|B Chain B, Crystal Structure Of Human Mono-Glyceride Lipase
Length = 320
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 47/111 (42%), Gaps = 10/111 (9%)
Query: 69 STLLYSHGNAADLGQMYELFIQLSIHLRVNLMGYDYSGYGQSTGKPSEHNTYADIEAVYK 128
+ + SHG G+ YE + L + + +D+ G+GQS G E +D +
Sbjct: 60 ALIFVSHGAGEHSGR-YEELARXLXGLDLLVFAHDHVGHGQSEG---ERXVVSDFHVFVR 115
Query: 129 CLEESYGTKQED-----IILYGQSVGSGPTLDLAARLP-QLRAVVLHSPIL 173
+ + + Q+D + L G S G + AA P VL SP++
Sbjct: 116 DVLQHVDSXQKDYPGLPVFLLGHSXGGAIAILTAAERPGHFAGXVLISPLV 166
>pdb|1BRT|A Chain A, Bromoperoxidase A2 Mutant M99t
Length = 277
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 3/76 (3%)
Query: 185 TYWFDIYKNIDKIPLVNCPVLIIHGTSDEVVDCSHGKQLWELCKEKYEPLWLKGGNHCDL 244
T W+ ++ IP ++ P LI+HGT D + + +++ E + ++G H L
Sbjct: 203 TTWYTDFRA--DIPRIDVPALILHGTGDRTLPIENTARVFHKALPSAEYVEVEGAPHGLL 260
Query: 245 -EHYPEYIRHLKKFVS 259
H E L F++
Sbjct: 261 WTHAEEVNTALLAFLA 276
>pdb|1A7U|A Chain A, Chloroperoxidase T
pdb|1A7U|B Chain B, Chloroperoxidase T
pdb|1A8U|A Chain A, Chloroperoxidase TBENZOATE COMPLEX
pdb|1A8U|B Chain B, Chloroperoxidase TBENZOATE COMPLEX
Length = 277
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/68 (23%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Query: 185 TYWFDIYKNIDKIPLVNCPVLIIHGTSDEVVDCSHGKQLWELCKEKYEPLWLKGGNHCDL 244
T W+ ++ IP ++ P LI+HGT D + + +++ E + ++G H L
Sbjct: 203 TTWYTDFRA--DIPRIDVPALILHGTGDRTLPIENTARVFHKALPSAEYVEVEGAPHGLL 260
Query: 245 EHYPEYIR 252
+ E +
Sbjct: 261 WTHAEEVN 268
>pdb|2OCK|A Chain A, Crystal Structure Of Valacyclovir Hydrolase D123n Mutant
Length = 254
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 197 IPLVNCPVLIIHGTSDEVVDCSHG 220
+P V CP LI+HG D +V H
Sbjct: 192 LPRVQCPALIVHGEKDPLVPRFHA 215
>pdb|2OCG|A Chain A, Crystal Structure Of Human Valacyclovir Hydrolase
pdb|2OCI|A Chain A, Crystal Structure Of Valacyclovir Hydrolase Complexed With
A Product Analogue
Length = 254
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 197 IPLVNCPVLIIHGTSDEVVDCSHG 220
+P V CP LI+HG D +V H
Sbjct: 192 LPRVQCPALIVHGEKDPLVPRFHA 215
>pdb|2OCL|A Chain A, Crystal Structure Of Valacyclovir Hydrolase S122a Mutant
Length = 254
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 197 IPLVNCPVLIIHGTSDEVVDCSHG 220
+P V CP LI+HG D +V H
Sbjct: 192 LPRVQCPALIVHGEKDPLVPRFHA 215
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,375,611
Number of Sequences: 62578
Number of extensions: 431494
Number of successful extensions: 1172
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 1153
Number of HSP's gapped (non-prelim): 35
length of query: 368
length of database: 14,973,337
effective HSP length: 100
effective length of query: 268
effective length of database: 8,715,537
effective search space: 2335763916
effective search space used: 2335763916
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)