BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017683
(368 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SBJ1|PDK_ARATH [Pyruvate dehydrogenase (acetyl-transferring)] kinase,
mitochondrial OS=Arabidopsis thaliana GN=PDK PE=1 SV=1
Length = 366
Score = 600 bits (1547), Expect = e-171, Method: Compositional matrix adjust.
Identities = 287/352 (81%), Positives = 322/352 (91%), Gaps = 6/352 (1%)
Query: 1 MAAKKLSETFSKSLIEEVGRWGCMKQTGVSLRYMMEFGSKPTDKNLLISAQFLHKELPIR 60
MA KK E F KSLIE+V +WGCMKQTGVSLRYMMEFGSKPT++NLLISAQFLHKELPIR
Sbjct: 1 MAVKKACEMFPKSLIEDVHKWGCMKQTGVSLRYMMEFGSKPTERNLLISAQFLHKELPIR 60
Query: 61 IARRAIELETLPYGLSEKPAVLKVRDWYLDSFRDLRSFPDIRSTSDERDFTQMIKAIKVR 120
+ARRAIEL+TLPYGLS+KPAVLKVRDWYL+SFRD+R+FP+I+ + DE+DFTQMIKA+KVR
Sbjct: 61 VARRAIELQTLPYGLSDKPAVLKVRDWYLESFRDMRAFPEIKDSGDEKDFTQMIKAVKVR 120
Query: 121 HNNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIGQHVELHNPNP 180
HNNVVPMMALG+ QLKK M+ +LDEIHQFLDRFY+SRIGIRMLIGQHVELHNPNP
Sbjct: 121 HNNVVPMMALGVNQLKKGMNSG----NLDEIHQFLDRFYLSRIGIRMLIGQHVELHNPNP 176
Query: 181 PPHCIGYIDTKMSPVQVARNASEHARCVCLREYGSAPDFNIYGDPSFTFPYVPSHLHLMV 240
P H +GYI TKMSP++VARNASE AR +C REYGSAP+ NIYGDPSFTFPYVP+HLHLM+
Sbjct: 177 PLHTVGYIHTKMSPMEVARNASEDARSICFREYGSAPEINIYGDPSFTFPYVPTHLHLMM 236
Query: 241 FELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLY 300
+ELVKNSLRAV+ER++DSD+VAPPIRIIVADG+EDVTIKVSDEGGGI RSGLP+IFTYLY
Sbjct: 237 YELVKNSLRAVQERFVDSDRVAPPIRIIVADGIEDVTIKVSDEGGGIARSGLPRIFTYLY 296
Query: 301 STARNPLDENTDLA-AD-KGTMAGYGYGLPISRLYARYFGGDLQIISMEGYG 350
STARNPL+E+ DL AD TMAGYGYGLPISRLYARYFGGDLQIISMEGYG
Sbjct: 297 STARNPLEEDVDLGIADVPVTMAGYGYGLPISRLYARYFGGDLQIISMEGYG 348
>sp|P91622|PDK_DROME [Pyruvate dehydrogenase [lipoamide]] kinase, mitochondrial
OS=Drosophila melanogaster GN=Pdk PE=2 SV=2
Length = 413
Score = 234 bits (598), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 138/333 (41%), Positives = 193/333 (57%), Gaps = 18/333 (5%)
Query: 29 VSLRYMMEFGSKPTDKNLLISAQFLHKELPIRIARRAIELETLPYGLSEKPAVLKVRDWY 88
+S++ M+FG +K I FL KELP+R+A E+ LP L +V +V WY
Sbjct: 33 LSIKQFMDFGQNACEKKSYI---FLRKELPVRLANIMKEIALLPDNLLHTRSVSEVSSWY 89
Query: 89 LDSFRDLRSFPDIRSTSDE-RDFTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYED 147
+ SF D+ + T D + F + I+ RHN+VV MA G+ ++K+ ++
Sbjct: 90 VKSFEDVLVYEKAEPTHDNLQKFVADLDLIRNRHNDVVQTMAQGVIEMKENEGGQVDAPT 149
Query: 148 LDEIHQFLDRFYMSRIGIRMLIGQHVELH--NPNPPPHCIGYIDTKMSPVQVARNASEHA 205
I FLDR YMSRI IRMLI QH L NP+ IG +D V R+A E+A
Sbjct: 150 ESSIQYFLDRLYMSRISIRMLINQHTLLFGGNPHAGGRHIGCLDPACDLSDVVRDAYENA 209
Query: 206 RCVCLREYGSAPDFNIY---GDPSFTFP----YVPSHLHLMVFELVKNSLRAVEERY-MD 257
R +C + Y ++P I +P P YVPSHL+ M+FEL KNS+RAV E + D
Sbjct: 210 RFLCDQYYLTSPALEIQQHSSEPGDNLPIRTVYVPSHLYYMLFELFKNSMRAVVEHHGHD 269
Query: 258 SDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAADK 317
++ PP+++ + G ED+ +K+SD+GGGIPRS ++F Y+YSTA P +DL
Sbjct: 270 NNDTLPPLKVAICKGKEDICVKISDQGGGIPRSQTDQLFKYMYSTAPQP--SKSDLHT-- 325
Query: 318 GTMAGYGYGLPISRLYARYFGGDLQIISMEGYG 350
+AGYGYGLPISRLYARYF GD+ ++S EG+G
Sbjct: 326 VPLAGYGYGLPISRLYARYFHGDIVLLSCEGFG 358
>sp|Q64536|PDK2_RAT [Pyruvate dehydrogenase [lipoamide]] kinase isozyme 2,
mitochondrial OS=Rattus norvegicus GN=Pdk2 PE=1 SV=1
Length = 407
Score = 229 bits (583), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 142/336 (42%), Positives = 196/336 (58%), Gaps = 27/336 (8%)
Query: 29 VSLRYMMEFGSKPTDKNLLISAQFLHKELPIRIARRAIELETLPYGLSEKPAVLKVRDWY 88
+S++ ++FGS + S FL +ELP+R+A E+ LP + P+V V+ WY
Sbjct: 31 LSMKQFLDFGSSNACEK--TSFTFLRQELPVRLANIMKEINLLPDRVLSTPSVQLVQSWY 88
Query: 89 LDSFRDLRSFPDIRSTSDERDFTQMIKA---IKVRHNNVVPMMALGLQQLKKEMDPKIVY 145
+ S D+ F D + D R +Q A I+ RHN+VVP MA G+ + K V
Sbjct: 89 VQSLLDIMEFLD-KDPEDHRTLSQFTDALVTIRNRHNDVVPTMAQGVLEYKDTYGDDPVS 147
Query: 146 EDLDEIHQFLDRFYMSRIGIRMLIGQHVELH----NPNPPPHCIGYIDTKMSPVQVARNA 201
I FLDRFY+SRI IRMLI QH + NP P H IG ID S V ++A
Sbjct: 148 NQ--NIQYFLDRFYLSRISIRMLINQHTLIFDGSTNPAHPKH-IGSIDPNCSVSDVVKDA 204
Query: 202 SEHARCVCLREYGSAPDFNI--YGDPSFTFP----YVPSHLHLMVFELVKNSLRAVEERY 255
+ A+ +C + Y ++PD I + T P YVPSHL+ M+FEL KN++RA E +
Sbjct: 205 YDMAKLLCDKYYMASPDLEIQEVNATNATQPIHMVYVPSHLYHMLFELFKNAMRATVESH 264
Query: 256 MDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAA 315
+S PPI+I+VA G ED++IK+SD GGG+P + ++F+Y+YSTA P
Sbjct: 265 -ESSLTLPPIKIMVALGEEDLSIKMSDRGGGVPLRKIERLFSYMYSTAPTPQ------PG 317
Query: 316 DKGT-MAGYGYGLPISRLYARYFGGDLQIISMEGYG 350
GT +AG+GYGLPISRLYA+YF GDLQ+ SMEG+G
Sbjct: 318 TGGTPLAGFGYGLPISRLYAKYFQGDLQLFSMEGFG 353
>sp|Q9JK42|PDK2_MOUSE [Pyruvate dehydrogenase [lipoamide]] kinase isozyme 2,
mitochondrial OS=Mus musculus GN=Pdk2 PE=1 SV=2
Length = 407
Score = 228 bits (582), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 140/336 (41%), Positives = 194/336 (57%), Gaps = 27/336 (8%)
Query: 29 VSLRYMMEFGSKPTDKNLLISAQFLHKELPIRIARRAIELETLPYGLSEKPAVLKVRDWY 88
+S++ ++FGS + S FL +ELP+R+A E+ LP + P+V V+ WY
Sbjct: 31 LSMKQFLDFGSSNACEK--TSFTFLRQELPVRLANIMKEINLLPDRVLGTPSVQLVQSWY 88
Query: 89 LDSFRDLRSFPDIRSTSDERDFTQMIKA---IKVRHNNVVPMMALGLQQLKKEMDPKIVY 145
+ S D+ F D + D R +Q A I+ RHN+VVP MA G+ + K V
Sbjct: 89 VQSLLDIMEFLD-KDPEDHRTLSQFTDALVTIRNRHNDVVPTMAQGVLEYKDTYGDDPVS 147
Query: 146 EDLDEIHQFLDRFYMSRIGIRMLIGQHVELH----NPNPPPHCIGYIDTKMSPVQVARNA 201
I FLDRFY+SRI IRMLI QH + NP P H IG ID S V ++A
Sbjct: 148 NQ--NIQYFLDRFYLSRISIRMLINQHTLIFDGSTNPAHPKH-IGSIDPNCSVSDVVKDA 204
Query: 202 SEHARCVCLREYGSAPDFNIY------GDPSFTFPYVPSHLHLMVFELVKNSLRAVEERY 255
+ A+ +C + Y ++PD I + YVPSHL+ M+FEL KN++RA E +
Sbjct: 205 YDMAKLLCDKYYMASPDLEIQEVNATNANQPIHMVYVPSHLYHMLFELFKNAMRATVESH 264
Query: 256 MDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAA 315
+S PPI+I+VA G ED++IK+SD GGG+P + ++F+Y+YSTA P
Sbjct: 265 -ESSLTLPPIKIMVALGEEDLSIKMSDRGGGVPLRKIERLFSYMYSTAPTPQ------PG 317
Query: 316 DKGT-MAGYGYGLPISRLYARYFGGDLQIISMEGYG 350
GT +AG+GYGLPISRLYA+YF GDLQ+ SMEG+G
Sbjct: 318 TGGTPLAGFGYGLPISRLYAKYFQGDLQLFSMEGFG 353
>sp|Q15119|PDK2_HUMAN [Pyruvate dehydrogenase [lipoamide]] kinase isozyme 2,
mitochondrial OS=Homo sapiens GN=PDK2 PE=1 SV=2
Length = 407
Score = 228 bits (581), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 138/336 (41%), Positives = 195/336 (58%), Gaps = 27/336 (8%)
Query: 29 VSLRYMMEFGSKPTDKNLLISAQFLHKELPIRIARRAIELETLPYGLSEKPAVLKVRDWY 88
+S++ ++FGS + S FL +ELP+R+A E+ LP + P+V V+ WY
Sbjct: 31 LSMKQFLDFGSSNACEK--TSFTFLRQELPVRLANIMKEINLLPDRVLSTPSVQLVQSWY 88
Query: 89 LDSFRDLRSFPDIRSTSDERDFTQMIKA---IKVRHNNVVPMMALGLQQLKKEMDPKIVY 145
+ S D+ F D + D R +Q A I+ RHN+VVP MA G+ + K V
Sbjct: 89 VQSLLDIMEFLD-KDPEDHRTLSQFTDALVTIRNRHNDVVPTMAQGVLEYKDTYGDDPVS 147
Query: 146 EDLDEIHQFLDRFYMSRIGIRMLIGQHVELH----NPNPPPHCIGYIDTKMSPVQVARNA 201
I FLDRFY+SRI IRMLI QH + NP P H IG ID + +V ++A
Sbjct: 148 NQ--NIQYFLDRFYLSRISIRMLINQHTLIFDGSTNPAHPKH-IGSIDPNCNVSEVVKDA 204
Query: 202 SEHARCVCLREYGSAPDFNIY------GDPSFTFPYVPSHLHLMVFELVKNSLRAVEERY 255
+ A+ +C + Y ++PD I YVPSHL+ M+FEL KN++RA E +
Sbjct: 205 YDMAKLLCDKYYMASPDLEIQEINAANSKQPIHMVYVPSHLYHMLFELFKNAMRATVESH 264
Query: 256 MDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAA 315
+S + PPI+++VA G ED++IK+SD GGG+P + ++F+Y+YSTA P
Sbjct: 265 -ESSLILPPIKVMVALGEEDLSIKMSDRGGGVPLRKIERLFSYMYSTAPTP------QPG 317
Query: 316 DKGT-MAGYGYGLPISRLYARYFGGDLQIISMEGYG 350
GT +AG+GYGLPISRLYA+YF GDLQ+ SMEG+G
Sbjct: 318 TGGTPLAGFGYGLPISRLYAKYFQGDLQLFSMEGFG 353
>sp|Q15120|PDK3_HUMAN [Pyruvate dehydrogenase [lipoamide]] kinase isozyme 3,
mitochondrial OS=Homo sapiens GN=PDK3 PE=1 SV=1
Length = 406
Score = 226 bits (577), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 142/350 (40%), Positives = 201/350 (57%), Gaps = 27/350 (7%)
Query: 16 EEVGRWGCMKQTGVSLRYMMEFGSKPTDKNLLISAQFLHKELPIRIARRAIELETLPYGL 75
+++ R+ + +S++ ++FG + S FL KELP+R+A E+ LP L
Sbjct: 14 KQIERYSRFSPSPLSIKQFLDFGRDNACEK--TSYMFLRKELPVRLANTMREVNLLPDNL 71
Query: 76 SEKPAVLKVRDWYLDSFRDLRSFPDIRSTSDER---DFTQMIKAIKVRHNNVVPMMALGL 132
+P+V V+ WY+ SF +L + + +S D + +F Q++ ++ RHN+VVP MA G+
Sbjct: 72 LNRPSVGLVQSWYMQSFLELLEYEN-KSPEDPQVLDNFLQVLIKVRNRHNDVVPTMAQGV 130
Query: 133 QQLKKEM--DPKIVYEDLDEIHQFLDRFYMSRIGIRMLIGQHVELH----NPNPPPHCIG 186
+ K++ DP I I FLDRFY +RI RMLI QH L NP P H IG
Sbjct: 131 IEYKEKFGFDPFIS----TNIQYFLDRFYTNRISFRMLINQHTLLFGGDTNPVHPKH-IG 185
Query: 187 YIDTKMSPVQVARNASEHARCVCLREYGSAPD-----FNIYG-DPSFTFPYVPSHLHLMV 240
ID + V ++A E A+ +C + Y AP+ FN D YVPSHL M+
Sbjct: 186 SIDPTCNVADVVKDAYETAKMLCEQYYLVAPELEVEEFNAKAPDKPIQVVYVPSHLFHML 245
Query: 241 FELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLY 300
FEL KNS+RA E Y D + P ++ +V G ED++IK+SD GGG+P + ++F Y+Y
Sbjct: 246 FELFKNSMRATVELYEDRKEGYPAVKTLVTLGKEDLSIKISDLGGGVPLRKIDRLFNYMY 305
Query: 301 STARNPLDENTDLAADKGTMAGYGYGLPISRLYARYFGGDLQIISMEGYG 350
STA P E T A +AG+GYGLPISRLYARYF GDL++ SMEG G
Sbjct: 306 STAPRPSLEPTRAAP----LAGFGYGLPISRLYARYFQGDLKLYSMEGVG 351
>sp|Q922H2|PDK3_MOUSE [Pyruvate dehydrogenase [lipoamide]] kinase isozyme 3,
mitochondrial OS=Mus musculus GN=Pdk3 PE=2 SV=1
Length = 415
Score = 224 bits (572), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 141/350 (40%), Positives = 200/350 (57%), Gaps = 27/350 (7%)
Query: 16 EEVGRWGCMKQTGVSLRYMMEFGSKPTDKNLLISAQFLHKELPIRIARRAIELETLPYGL 75
+++ R+ + +S++ ++FG + S FL KELP+R+A E+ LP L
Sbjct: 14 KQIERYSRFSPSPLSIKQFLDFGRDNACEK--TSYMFLRKELPVRLANTMREVNLLPDNL 71
Query: 76 SEKPAVLKVRDWYLDSFRDLRSFPDIRSTSDER---DFTQMIKAIKVRHNNVVPMMALGL 132
+P+V V+ WY+ SF +L + + +S D R +F ++ I+ RHN+VVP MA G+
Sbjct: 72 LNRPSVGLVQSWYMQSFLELLEYEN-KSPEDPRVLDNFLNVLINIRNRHNDVVPTMAQGV 130
Query: 133 QQLKKEM--DPKIVYEDLDEIHQFLDRFYMSRIGIRMLIGQHVELH----NPNPPPHCIG 186
+ K++ DP I I FLDRFY +RI RMLI QH L NP P H IG
Sbjct: 131 IEYKEKFGFDPFIS----SNIQYFLDRFYTNRISFRMLINQHTLLFGGDTNPAHPKH-IG 185
Query: 187 YIDTKMSPVQVARNASEHARCVCLREYGSAPD-----FNIYG-DPSFTFPYVPSHLHLMV 240
ID + V ++A E A+ +C + Y AP+ FN + YVPSHL M+
Sbjct: 186 SIDPTCNVADVVKDAYETAKMLCEQYYLVAPELEVEEFNAKAPNKPIQVVYVPSHLFHML 245
Query: 241 FELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLY 300
FEL KNS+RA E + D + P ++ +V G ED++IK+SD GGG+P + ++F Y+Y
Sbjct: 246 FELFKNSMRATVELHEDKKEGYPAVKTLVTLGKEDLSIKISDLGGGVPLRKIDRLFNYMY 305
Query: 301 STARNPLDENTDLAADKGTMAGYGYGLPISRLYARYFGGDLQIISMEGYG 350
STA P E T A +AG+GYGLPISRLYARYF GDL++ SMEG G
Sbjct: 306 STAPRPSLEPTRAAP----LAGFGYGLPISRLYARYFQGDLKLYSMEGVG 351
>sp|Q16654|PDK4_HUMAN [Pyruvate dehydrogenase [lipoamide]] kinase isozyme 4,
mitochondrial OS=Homo sapiens GN=PDK4 PE=1 SV=1
Length = 411
Score = 224 bits (570), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 135/347 (38%), Positives = 204/347 (58%), Gaps = 25/347 (7%)
Query: 17 EVGRWGCMKQTGVSLRYMMEFGSKPTDKNLLISAQFLHKELPIRIARRAIELETLPYGLS 76
EV + + +S++ +++FGS+ + S FL +ELP+R+A E++ LP L
Sbjct: 23 EVEHFSRYSPSPLSMKQLLDFGSENACER--TSFAFLRQELPVRLANILKEIDILPTQLV 80
Query: 77 EKPAVLKVRDWYLDSFRDLRSFPDIRSTSDER---DFTQMIKAIKVRHNNVVPMMALGLQ 133
+V V+ WY+ S DL F + +S D++ DF + ++ RH+NVVP MA G+
Sbjct: 81 NTSSVQLVKSWYIQSLMDLVEFHE-KSPDDQKALSDFVDTLIKVRNRHHNVVPTMAQGII 139
Query: 134 QLKK--EMDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIGQHVELHNPNPP--PHCIGYID 189
+ K +DP + ++L FLDRFYM+RI RML+ QH+ + + + P IG ID
Sbjct: 140 EYKDACTVDP-VTNQNL---QYFLDRFYMNRISTRMLMNQHILIFSDSQTGNPSHIGSID 195
Query: 190 TKMSPVQVARNASEHARCVCLREYGSAPDFNI------YGDPSFTFPYVPSHLHLMVFEL 243
V V ++A E +R +C + Y S+P+ + + D YVPSHLH M+FEL
Sbjct: 196 PNCDVVAVVQDAFECSRMLCDQYYLSSPELKLTQVNGKFPDQPIHIVYVPSHLHHMLFEL 255
Query: 244 VKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTA 303
KN++RA E + ++ PI +IV G ED+TIK+SD GGG+P + ++F+Y YSTA
Sbjct: 256 FKNAMRATVE-HQENQPSLTPIEVIVVLGKEDLTIKISDRGGGVPLRIIDRLFSYTYSTA 314
Query: 304 RNPLDENTDLAADKGTMAGYGYGLPISRLYARYFGGDLQIISMEGYG 350
P+ +N+ A +AG+GYGLPISRLYA+YF GDL + S+ GYG
Sbjct: 315 PTPVMDNSRNAP----LAGFGYGLPISRLYAKYFQGDLNLYSLSGYG 357
>sp|Q63065|PDK1_RAT [Pyruvate dehydrogenase [lipoamide]] kinase isozyme 1,
mitochondrial OS=Rattus norvegicus GN=Pdk1 PE=1 SV=1
Length = 434
Score = 222 bits (566), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 136/337 (40%), Positives = 195/337 (57%), Gaps = 28/337 (8%)
Query: 29 VSLRYMMEFGSKPTDKNLLISAQFLHKELPIRIARRAIELETLPYGLSEKPAVLKVRDWY 88
+S++ ++FGS + S FL +ELP+R+A E+ LP L P+V V+ WY
Sbjct: 57 LSMKQFLDFGS--VNACEKTSFMFLRQELPVRLANIMKEISLLPDNLLRTPSVQLVQSWY 114
Query: 89 LDSFRDLRSFPDIRSTSDER---DFTQMIKAIKVRHNNVVPMMALGLQQLKKE--MDPKI 143
+ S ++L F D +S D + +FT + I+ RHN+V+P MA G+ + K+ +DP
Sbjct: 115 IQSLQELLDFKD-KSAEDAKTIYEFTDTVIRIRNRHNDVIPTMAQGVTEYKESFGVDPVT 173
Query: 144 VYEDLDEIHQFLDRFYMSRIGIRMLIGQHVELHNPNPPP---HCIGYIDTKMSPVQVARN 200
+ FLDRFYMSRI IRML+ QH L P IG I+ V+V ++
Sbjct: 174 S----QNVQYFLDRFYMSRISIRMLLNQHSLLFGGKGSPSHRKHIGSINPNCDVVEVIKD 229
Query: 201 ASEHARCVCLREYGSAPDFNIY-------GDPSFTFPYVPSHLHLMVFELVKNSLRAVEE 253
E+AR +C Y ++P+ + G P YVPSHL+ MVFEL KN++RA E
Sbjct: 230 GYENARRLCDLYYVNSPELELEELNAKSPGQP-IQVVYVPSHLYHMVFELFKNAMRATME 288
Query: 254 RYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDL 313
+ D V PPI++ V G ED+T+K+SD GGG+P + ++F Y+YSTA P E +
Sbjct: 289 HHADKG-VYPPIQVHVTLGEEDLTVKMSDRGGGVPLRKIDRLFNYMYSTAPRPRVETSRA 347
Query: 314 AADKGTMAGYGYGLPISRLYARYFGGDLQIISMEGYG 350
+AG+GYGLPISRLYA+YF GDL++ S+EGYG
Sbjct: 348 VP----LAGFGYGLPISRLYAQYFQGDLKLYSLEGYG 380
>sp|Q8BFP9|PDK1_MOUSE [Pyruvate dehydrogenase [lipoamide]] kinase isozyme 1,
mitochondrial OS=Mus musculus GN=Pdk1 PE=2 SV=2
Length = 434
Score = 222 bits (565), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 136/336 (40%), Positives = 195/336 (58%), Gaps = 26/336 (7%)
Query: 29 VSLRYMMEFGSKPTDKNLLISAQFLHKELPIRIARRAIELETLPYGLSEKPAVLKVRDWY 88
+S++ ++FGS + S FL +ELP+R+A E+ LP L P+V V+ WY
Sbjct: 57 LSMKQFLDFGS--VNACEKTSFMFLRQELPVRLANIMKEISLLPDNLLRTPSVQLVQSWY 114
Query: 89 LDSFRDLRSFPDIRSTSDER---DFTQMIKAIKVRHNNVVPMMALGLQQLKKE--MDPKI 143
+ S ++L F D +S D + +FT + I+ RHN+V+P MA G+ + K+ +DP
Sbjct: 115 IQSLQELLDFKD-KSAEDAKTIYEFTDTVIRIRNRHNDVIPTMAQGVTEYKESFGVDPVT 173
Query: 144 VYEDLDEIHQFLDRFYMSRIGIRMLIGQHVELHNPNPPP---HCIGYIDTKMSPVQVARN 200
+ FLDRFYMSRI IRML+ QH L P IG I+ V+V ++
Sbjct: 174 S----QNVQYFLDRFYMSRISIRMLLNQHSLLFGGKGSPSHRKHIGSINPNCDVVEVIKD 229
Query: 201 ASEHARCVCLREYGSAPDFNI----YGDPSFTFP--YVPSHLHLMVFELVKNSLRAVEER 254
E+AR +C Y ++P+ + P T YVPSHL+ MVFEL KN++RA E
Sbjct: 230 GYENARRLCDLYYVNSPELELEELNAKSPGQTIQVVYVPSHLYHMVFELFKNAMRATMEH 289
Query: 255 YMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLA 314
+ D V PPI++ V G ED+T+K+SD GGG+P + ++F Y+YSTA P E +
Sbjct: 290 HADKG-VYPPIQVHVTLGEEDLTVKMSDRGGGVPLRKIDRLFNYMYSTAPRPRVETSRAV 348
Query: 315 ADKGTMAGYGYGLPISRLYARYFGGDLQIISMEGYG 350
+AG+GYGLPISRLYA+YF GDL++ S+EGYG
Sbjct: 349 P----LAGFGYGLPISRLYAQYFQGDLKLYSLEGYG 380
>sp|O88345|PDK4_SPETR [Pyruvate dehydrogenase [lipoamide]] kinase isozyme 4,
mitochondrial OS=Spermophilus tridecemlineatus GN=PDK4
PE=2 SV=1
Length = 412
Score = 220 bits (561), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 133/346 (38%), Positives = 200/346 (57%), Gaps = 23/346 (6%)
Query: 17 EVGRWGCMKQTGVSLRYMMEFGSKPTDKNLLISAQFLHKELPIRIARRAIELETLPYGLS 76
EV + + +S++ +++FGS + S FL +ELP+R+A E++ LP L+
Sbjct: 23 EVELFSRYSPSPLSMKQLLDFGSDNACER--TSFSFLRQELPVRLANILKEIDVLPDRLT 80
Query: 77 EKPAVLKVRDWYLDSFRDLRSFPDIRSTSDER---DFTQMIKAIKVRHNNVVPMMALGLQ 133
+V V+ WY+ S +L F + +S D++ DF + ++ RH+NVVP MA G+
Sbjct: 81 NTSSVQLVKSWYIQSLMELVEFHE-KSPEDQKNLSDFVDTLIKVRNRHHNVVPTMAQGIL 139
Query: 134 QLKKEMDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIGQHVELHNPNPP--PHCIGYIDTK 191
+ K V + FLDRFYM+RI RML+ QH+ + + + P IG ID K
Sbjct: 140 EYKDTCTVDPVTNQ--SLQYFLDRFYMNRISTRMLMNQHILIFSDSQTGNPSHIGSIDPK 197
Query: 192 MSPVQVARNASEHARCVCLREYGSAPDFNIY-------GDPSFTFPYVPSHLHLMVFELV 244
V V ++A E ++ +C + Y ++P+ + G P YVPSHLH M+FEL
Sbjct: 198 CDVVAVIQDAFESSKMLCDQYYLTSPELKLTQVNGKFPGQP-IHIVYVPSHLHHMLFELF 256
Query: 245 KNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTAR 304
KN++RA ER +S P+ +IV G ED+TIK+SD GGG+P ++F+Y+YSTA
Sbjct: 257 KNAMRATVER-QESWPSLTPVEVIVVLGKEDLTIKISDRGGGVPLRITDRLFSYMYSTAP 315
Query: 305 NPLDENTDLAADKGTMAGYGYGLPISRLYARYFGGDLQIISMEGYG 350
P+ +N+ A +AG+GYGLPISRLYA+YF GDL + S+ GYG
Sbjct: 316 TPVMDNSRNAP----LAGFGYGLPISRLYAKYFQGDLNLYSLSGYG 357
>sp|O54937|PDK4_RAT [Pyruvate dehydrogenase [lipoamide]] kinase isozyme 4,
mitochondrial OS=Rattus norvegicus GN=Pdk4 PE=1 SV=1
Length = 412
Score = 220 bits (560), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 135/348 (38%), Positives = 201/348 (57%), Gaps = 27/348 (7%)
Query: 17 EVGRWGCMKQTGVSLRYMMEFGSKPTDKNLLISAQFLHKELPIRIARRAIELETLPYGLS 76
EV + + +S++ +++FGS+ + S FL +ELP+R+A E++ LP L
Sbjct: 23 EVELFSRYSPSPLSMKQLLDFGSENACER--TSFSFLRQELPVRLANILKEIDILPEHLV 80
Query: 77 EKPAVLKVRDWYLDSFRDLRSFPDIRSTSDER---DFTQMIKAIKVRHNNVVPMMALGLQ 133
P+V V+ WY+ S DL F + +S D++ DF + ++ RH+NVVP MA G+
Sbjct: 81 NTPSVQLVKSWYIQSLMDLVEFHE-KSPEDQKVLSDFVDTLVKVRNRHHNVVPTMAQGIL 139
Query: 134 QLKKE--MDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIGQHVELHNPNPP--PHCIGYID 189
+ K +DP + ++L FLDRFYM+RI RML+ QH+ + + + P IG ID
Sbjct: 140 EYKDNCTVDP-VTNQNL---QYFLDRFYMNRISTRMLMNQHILIFSDSKTGNPSHIGSID 195
Query: 190 TKMSPVQVARNASEHARCVCLREYGSAPDFNIY-------GDPSFTFPYVPSHLHLMVFE 242
V V +A E A+ +C + Y ++P+ + G P YVPSHLH M+FE
Sbjct: 196 PNCDVVAVVEDAFECAKMLCDQYYLTSPELKLTQVNGKFPGQP-IHIVYVPSHLHHMLFE 254
Query: 243 LVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYST 302
L KN++RA E + ++ P+ V G ED+TIK+SD GGG+P ++F+Y YST
Sbjct: 255 LFKNAMRATVE-HQENRPFLTPVEATVVLGKEDLTIKISDRGGGVPLRITDRLFSYTYST 313
Query: 303 ARNPLDENTDLAADKGTMAGYGYGLPISRLYARYFGGDLQIISMEGYG 350
A P+ +N+ A +AG+GYGLPISRLYA+YF GDL + SM GYG
Sbjct: 314 APTPVMDNSRNAP----LAGFGYGLPISRLYAKYFQGDLNLYSMSGYG 357
>sp|Q1KMR4|PDK4_RHIFE [Pyruvate dehydrogenase [lipoamide]] kinase isozyme 4,
mitochondrial OS=Rhinolophus ferrumequinum GN=PDK4 PE=2
SV=1
Length = 412
Score = 220 bits (560), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 132/348 (37%), Positives = 206/348 (59%), Gaps = 27/348 (7%)
Query: 17 EVGRWGCMKQTGVSLRYMMEFGSKPTDKNLLISAQFLHKELPIRIARRAIELETLPYGLS 76
EV + + +S++ +++FGS+ + S+ FL +ELP+R+A E++ LP L
Sbjct: 23 EVEHFSRYSPSPLSMKQLLDFGSENACER--TSSAFLRQELPVRLANILKEIDILPDRLV 80
Query: 77 EKPAVLKVRDWYLDSFRDLRSFPDIRSTSDER---DFTQMIKAIKVRHNNVVPMMALGLQ 133
+V V+ WY+ S +L F + RS D++ DF + ++ RH+NVVP MA G+
Sbjct: 81 NTSSVQLVKSWYIQSLMELVEFHE-RSPDDQKVLSDFVDTLITVRNRHHNVVPTMAQGII 139
Query: 134 QLKKE--MDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIGQHVELHNPNPP--PHCIGYID 189
+ K +DP + ++L FLDRFYM+RI RML+ QH+ + + + P IG ID
Sbjct: 140 EYKDSCTVDP-VTNQNL---QYFLDRFYMNRISTRMLMNQHILIFSDSQTGNPSHIGSID 195
Query: 190 TKMSPVQVARNASEHARCVCLREYGSAPDFNIY-------GDPSFTFPYVPSHLHLMVFE 242
+ V ++A E +R +C + Y ++P+ + G+P YVPSHLH M+FE
Sbjct: 196 PNCNVAAVVQDAFECSRMLCDQYYLTSPELKLTQVNGKFPGEP-IHIVYVPSHLHHMLFE 254
Query: 243 LVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYST 302
L KN++RA E + +++ P+ + V G ED+TIK+SD GGG+P ++F+Y+YST
Sbjct: 255 LFKNAMRATVE-HQENEPSLTPVEVTVVLGKEDLTIKISDRGGGVPLRITDRLFSYMYST 313
Query: 303 ARNPLDENTDLAADKGTMAGYGYGLPISRLYARYFGGDLQIISMEGYG 350
A P+ +N+ A +AG+GYGLPISRLYA+YF GDL + S+ GYG
Sbjct: 314 APTPVMDNSRNAP----LAGFGYGLPISRLYAKYFQGDLHLYSLSGYG 357
>sp|O70571|PDK4_MOUSE [Pyruvate dehydrogenase [lipoamide]] kinase isozyme 4,
mitochondrial OS=Mus musculus GN=Pdk4 PE=2 SV=1
Length = 412
Score = 219 bits (557), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 135/348 (38%), Positives = 203/348 (58%), Gaps = 27/348 (7%)
Query: 17 EVGRWGCMKQTGVSLRYMMEFGSKPTDKNLLISAQFLHKELPIRIARRAIELETLPYGLS 76
EV + + +S++ +++FGS+ + S FL +ELP+R+A E++ LP L
Sbjct: 23 EVELFSRYSPSPLSMKQLLDFGSENACER--TSFAFLRQELPVRLANILKEIDILPDRLV 80
Query: 77 EKPAVLKVRDWYLDSFRDLRSFPDIRSTSDER---DFTQMIKAIKVRHNNVVPMMALGLQ 133
P+V V+ WY+ S DL F + +S D++ +F + ++ RH+NVVP MA G+
Sbjct: 81 NTPSVQLVKSWYIQSLMDLVEFHE-KSPEDQKALSEFVDTLVKVRNRHHNVVPTMAQGIL 139
Query: 134 QLKKE--MDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIGQHVELHNPNPP--PHCIGYID 189
+ K +DP + ++L FLDRFYM+RI RML+ QH+ + + + P IG ID
Sbjct: 140 EYKDTCTVDP-VTNQNL---QYFLDRFYMNRISTRMLMNQHILIFSDSKTGNPSHIGSID 195
Query: 190 TKMSPVQVARNASEHARCVCLREYGSAPDFNIY-------GDPSFTFPYVPSHLHLMVFE 242
V V ++A E A+ +C + Y ++P+ N+ G P YVPSHLH M+FE
Sbjct: 196 PNCDVVAVVQDAFECAKMLCDQYYLTSPELNLTQVNGKFPGQP-IHIVYVPSHLHHMLFE 254
Query: 243 LVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYST 302
L KN++RA E + ++ P+ V G ED+TIK+SD GGG+P ++F+Y YST
Sbjct: 255 LFKNAMRATVE-HQENRPSLTPVEATVVLGKEDLTIKISDRGGGVPLRITDRLFSYTYST 313
Query: 303 ARNPLDENTDLAADKGTMAGYGYGLPISRLYARYFGGDLQIISMEGYG 350
A P+ +N+ A +AG+GYGLPISRLYA+YF GDL + SM GYG
Sbjct: 314 APTPVMDNSRNAP----LAGFGYGLPISRLYAKYFQGDLNLYSMSGYG 357
>sp|Q9P6P9|PDK_SCHPO [Pyruvate dehydrogenase [lipoamide]] kinase, mitochondrial
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPAC644.11c PE=3 SV=1
Length = 425
Score = 218 bits (556), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 116/248 (46%), Positives = 168/248 (67%), Gaps = 12/248 (4%)
Query: 109 DFTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDRFYMSRIGIRML 168
+F ++ I+ RH+NV +AL +Q+ +++ + + + I FLDRFYMSRIGIRML
Sbjct: 166 NFAYLLNTIRTRHDNVAVEIALDIQEYRRKTN-----QIDNSIQIFLDRFYMSRIGIRML 220
Query: 169 IGQHVELHNPNPPPHCIGYIDTKMSPVQVARNASEHARCVCLREYG--SAPDFNIYGDPS 226
+GQ++ L + P + +G I T+ + Q+ A+E+A+ +C YG AP+ I DPS
Sbjct: 221 LGQYIALVSEPPRENYVGVISTRANIYQIIEGAAENAKYICRLAYGLFEAPEIQIICDPS 280
Query: 227 FTFPYVPSHLHLMVFELVKNSLRA-VEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGG 285
YV SHL+ VFE++KNSLRA VE +DSD PPI++IVA G ED+TIK+SDEGG
Sbjct: 281 LEMMYVESHLNHAVFEILKNSLRATVEFHGVDSD-FFPPIKVIVAKGQEDITIKISDEGG 339
Query: 286 GIPRSGLPKIFTYLYSTARNPL-DENTDLAADKGT--MAGYGYGLPISRLYARYFGGDLQ 342
GI R +P +++Y+++TA L D+ D+ + T MAG+G+GLP++RLY RYFGGDL+
Sbjct: 340 GISRRNIPLVWSYMFTTASPTLTDDPHDIVSANSTTPMAGFGFGLPLARLYTRYFGGDLE 399
Query: 343 IISMEGYG 350
+ISMEGYG
Sbjct: 400 LISMEGYG 407
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 44/87 (50%)
Query: 9 TFSKSLIEEVGRWGCMKQTGVSLRYMMEFGSKPTDKNLLISAQFLHKELPIRIARRAIEL 68
K+L E+V QTG+SL+ ++ FG PT L + FL ELPIR+ARR +L
Sbjct: 3 VLGKTLQEKVNLLAQYPQTGLSLKQLVYFGKNPTPGTLFRAGLFLRDELPIRLARRIQDL 62
Query: 69 ETLPYGLSEKPAVLKVRDWYLDSFRDL 95
+ L L + V+ Y S ++
Sbjct: 63 QNLSPMLRSMKRISSVKAAYGRSMEEI 89
>sp|Q15118|PDK1_HUMAN [Pyruvate dehydrogenase [lipoamide]] kinase isozyme 1,
mitochondrial OS=Homo sapiens GN=PDK1 PE=1 SV=1
Length = 436
Score = 218 bits (556), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 135/337 (40%), Positives = 195/337 (57%), Gaps = 26/337 (7%)
Query: 29 VSLRYMMEFGSKPTDKNLLISAQFLHKELPIRIARRAIELETLPYGLSEKPAVLKVRDWY 88
+S++ ++FGS + S FL +ELP+R+A E+ LP L P+V V+ WY
Sbjct: 57 LSMKQFLDFGS--VNACEKTSFMFLRQELPVRLANIMKEISLLPDNLLRTPSVQLVQSWY 114
Query: 89 LDSFRDLRSFPDIRSTSDER---DFTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVY 145
+ S ++L F D +S D + DFT + I+ RHN+V+P MA G+ + K+ V
Sbjct: 115 IQSLQELLDFKD-KSAEDAKAIYDFTDTVIRIRNRHNDVIPTMAQGVIEYKESFGVDPVT 173
Query: 146 EDLDEIHQFLDRFYMSRIGIRMLIGQHVEL---HNPNPPPH--CIGYIDTKMSPVQVARN 200
+ FLDRFYMSRI IRML+ QH L P H IG I+ + ++V ++
Sbjct: 174 SQ--NVQYFLDRFYMSRISIRMLLNQHSLLFGGKGKGSPSHRKHIGSINPNCNVLEVIKD 231
Query: 201 ASEHARCVCLREYGSAPDFNIY-------GDPSFTFPYVPSHLHLMVFELVKNSLRAVEE 253
E+AR +C Y ++P+ + G P YVPSHL+ MVFEL KN++RA E
Sbjct: 232 GYENARRLCDLYYINSPELELEELNAKSPGQP-IQVVYVPSHLYHMVFELFKNAMRATME 290
Query: 254 RYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDL 313
+ + V PPI++ V G ED+T+K+SD GGG+P + ++F Y+YSTA P E +
Sbjct: 291 HHANRG-VYPPIQVHVTLGNEDLTVKMSDRGGGVPLRKIDRLFNYMYSTAPRPRVETSRA 349
Query: 314 AADKGTMAGYGYGLPISRLYARYFGGDLQIISMEGYG 350
+AG+GYGLPISRLYA+YF GDL++ S+EGYG
Sbjct: 350 VP----LAGFGYGLPISRLYAQYFQGDLKLYSLEGYG 382
>sp|O02623|PDK_ASCSU [Pyruvate dehydrogenase [lipoamide]] kinase, mitochondrial
OS=Ascaris suum PE=2 SV=1
Length = 399
Score = 218 bits (556), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 140/363 (38%), Positives = 205/363 (56%), Gaps = 32/363 (8%)
Query: 3 AKKLSETFSKSLIEEVGRWGCMKQTGVSLRYMMEFGSKPTDKNLLISAQFLHKELPIRIA 62
++L F+ ++ ++ + + + ++++ ++FG T K+ S FL EL +R+A
Sbjct: 4 TRRLLGPFTSAIARKLEHYSQFQPSSLTIQQYLDFGQTGTMKS---SFLFLKNELLVRLA 60
Query: 63 RRAIELETLPYGLSEKPAVLKVRDWYLDSFRDLRSF------PDIRSTSDERDFTQMIKA 116
E+ LP L + P+ V +WY +SF DL F PDI S F ++
Sbjct: 61 NIMQEISLLPPTLLKMPSRRLVSNWYCESFEDLLQFEHAQVEPDIMS-----KFNDQLQT 115
Query: 117 IKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIGQHVELH 176
I RH+ VV MA GL +L++ I E I FLDRFY++RI IRML QH+ +
Sbjct: 116 ILKRHSRVVETMAEGLIELRESEGVDIASER--GIQYFLDRFYINRISIRMLQNQHLVVF 173
Query: 177 N---PNPPPHCIGYIDTKMSPVQVARNASEHARCVCLREYGSAPDFNIYGDPS------F 227
P P H IG ID V +A E+AR +C R Y +AP + S
Sbjct: 174 GVVLPESPRH-IGCIDPGCDVESVVHDAYENARFLCERYYLTAPGMKLEMHNSVNPGMPI 232
Query: 228 TFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGI 287
+ VPSHL+ ++FEL KNS+RA E + +D+ PPI+++V G ED++IK+SD GGG+
Sbjct: 233 SIVAVPSHLYHIMFELFKNSMRATVENH-GADEDLPPIKVMVVRGAEDLSIKISDRGGGV 291
Query: 288 PRSGLPKIFTYLYSTARNPLDENTDLAADKGTMAGYGYGLPISRLYARYFGGDLQIISME 347
R+ L ++FTY+YSTA P + T + +AGYGYGLP+SRLYARYF GD+ ++SME
Sbjct: 292 SRTILDRLFTYMYSTAPPPPRDGT-----QPPLAGYGYGLPLSRLYARYFHGDMYLVSME 346
Query: 348 GYG 350
GYG
Sbjct: 347 GYG 349
>sp|O14874|BCKD_HUMAN [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase,
mitochondrial OS=Homo sapiens GN=BCKDK PE=1 SV=2
Length = 412
Score = 209 bits (533), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 120/359 (33%), Positives = 199/359 (55%), Gaps = 23/359 (6%)
Query: 3 AKKLSETFSKSLIEEVGRWGCMKQTGVSLRYMMEFGSKPTD-KNLLISAQFLHKELPIRI 61
+K ++ +++S I+ ++ T MM + + D +LL SA++L +ELP+RI
Sbjct: 47 SKTVTSFYNQSAIDAAAEKPSVRLTPT----MMLYAGRSQDGSHLLKSARYLQQELPVRI 102
Query: 62 ARRAIELETLPYGLSEKPAVLKVRDWYLDSFRDLRSFPDIRSTSDERDFTQMIKAIKVRH 121
A R LP+ + P +L V + Y+ +F+ L FP I+ +DE + Q+++ + H
Sbjct: 103 AHRIKGFRCLPFIIGCNPTILHVHELYIRAFQKLTDFPPIKDQADEAQYCQLVRQLLDDH 162
Query: 122 NNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIGQHVELHNPNPP 181
+VV ++A GL++ +K + ED + FLD+ SR+GIRML H+ LH P
Sbjct: 163 KDVVTLLAEGLRESRKHI------EDEKLVRYFLDKTLTSRLGIRMLATHHLALHEDKPD 216
Query: 182 PHCIGYIDTKMSPVQVARNASEHARCVCLREYGSAPDFNIYGDPSFTFPYVPSHLHLMVF 241
+G I T++SP ++ + AR +C +YG+AP I G + FP++P L ++
Sbjct: 217 --FVGIICTRLSPKKIIEKWVDFARRLCEHKYGNAPRVRINGHVAARFPFIPMPLDYILP 274
Query: 242 ELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYS 301
EL+KN++RA E ++D+ P + I +A+ D+ I++SD GGGI L ++ Y ++
Sbjct: 275 ELLKNAMRATMESHLDTPYNVPDVVITIANNDVDLIIRISDRGGGIAHKDLDRVMDYHFT 334
Query: 302 TAR--------NPLDENTDL--AADKGTMAGYGYGLPISRLYARYFGGDLQIISMEGYG 350
TA +PL + D+ A G M G+G+GLP SR YA Y GG LQ+ S++G G
Sbjct: 335 TAEASTQDPRISPLFGHLDMHSGAQSGPMHGFGFGLPTSRAYAEYLGGSLQLQSLQGIG 393
>sp|Q00972|BCKD_RAT [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase,
mitochondrial OS=Rattus norvegicus GN=Bckdk PE=1 SV=2
Length = 412
Score = 207 bits (528), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 119/359 (33%), Positives = 199/359 (55%), Gaps = 23/359 (6%)
Query: 3 AKKLSETFSKSLIEEVGRWGCMKQTGVSLRYMMEFGSKPTD-KNLLISAQFLHKELPIRI 61
+K ++ +++S I+ V ++ T MM + + D +LL S ++L +ELP+RI
Sbjct: 47 SKTVTSFYNQSAIDVVAEKPSVRLTPT----MMLYSGRSQDGSHLLKSGRYLQQELPVRI 102
Query: 62 ARRAIELETLPYGLSEKPAVLKVRDWYLDSFRDLRSFPDIRSTSDERDFTQMIKAIKVRH 121
A R +LP+ + P +L V + Y+ +F+ L FP I+ +DE + Q+++ + H
Sbjct: 103 AHRIKGFRSLPFIIGCNPTILHVHELYIRAFQKLTDFPPIKDQADEAQYCQLVRQLLDDH 162
Query: 122 NNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIGQHVELHNPNPP 181
+VV ++A GL++ +K + ED + FLD+ SR+GIRML H+ LH P
Sbjct: 163 KDVVTLLAEGLRESRKHI------EDEKLVRYFLDKTLTSRLGIRMLATHHLALHEDKPD 216
Query: 182 PHCIGYIDTKMSPVQVARNASEHARCVCLREYGSAPDFNIYGDPSFTFPYVPSHLHLMVF 241
+G I T++SP ++ + AR +C +YG+AP I G + FP++P L ++
Sbjct: 217 --FVGIICTRLSPKKIIEKWVDFARRLCEHKYGNAPRVRINGHVAARFPFIPMPLDYILP 274
Query: 242 ELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYS 301
EL+KN++RA E ++D+ P + I +A+ D+ I++SD GGGI L ++ Y ++
Sbjct: 275 ELLKNAMRATMESHLDTPYNVPDVVITIANNDVDLIIRISDRGGGIAHKDLDRVMDYHFT 334
Query: 302 TAR--------NPLDENTDL--AADKGTMAGYGYGLPISRLYARYFGGDLQIISMEGYG 350
TA +PL + D+ G M G+G+GLP SR YA Y GG LQ+ S++G G
Sbjct: 335 TAEASTQDPRISPLFGHLDMHSGGQSGPMHGFGFGLPTSRAYAEYLGGSLQLQSLQGIG 393
>sp|Q02332|PDHK2_CAEEL Probable [pyruvate dehydrogenase [lipoamide]] kinase, mitochondrial
OS=Caenorhabditis elegans GN=pdhk-2 PE=3 SV=1
Length = 401
Score = 207 bits (526), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 135/359 (37%), Positives = 198/359 (55%), Gaps = 24/359 (6%)
Query: 3 AKKLSETFSKSLIEEVGRWGCMKQTGVSLRYMMEFGSKPTDKNLLISAQFLHKELPIRIA 62
++KL F SL +++ + + + ++++ ++FG T N S FL EL +R+A
Sbjct: 4 SRKLLGPFVGSLAKKLDYYSQFQPSSLTIQQYLDFGRIGTSAN---SYTFLKNELLVRLA 60
Query: 63 RRAIELETLPYGLSEKPAVLKVRDWYLDSFRDLRSFPDIRSTSDE-RDFTQMIKAIKVRH 121
E LP L + P+ V +WY +SF DL F S+ ++ F + + RH
Sbjct: 61 NIMQEFTLLPPKLLQMPSSKMVSNWYAESFEDLLLFEASDSSPEQVARFNDQLTVVLKRH 120
Query: 122 NNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIGQHVELHN---P 178
+VV MA GL +L++ I E I FLDRFY++RI IRML QH+ + P
Sbjct: 121 AHVVETMAEGLIELRESDGVDIASEK--GIQYFLDRFYINRISIRMLQNQHLVVFGNVLP 178
Query: 179 NPPPHCIGYIDTKMSPVQVARNASEHARCVCLREYGSAPDFNI-------YGDPSFTFPY 231
P H +G ID V +A E+AR +C R Y ++P + G P +
Sbjct: 179 ESPRH-VGCIDPACDVESVVYDAFENARFLCDRYYLTSPSMKLEMHNAVEKGKP-ISIVA 236
Query: 232 VPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSG 291
VPSHL+ M+FEL KN++RA E Y D P I++ V G ED++IK+ D GGG+ R+
Sbjct: 237 VPSHLYHMMFELFKNAMRATVE-YHGVDDDLPDIKVYVVKGQEDLSIKICDRGGGVSRTI 295
Query: 292 LPKIFTYLYSTARNPLDENTDLAADKGTMAGYGYGLPISRLYARYFGGDLQIISMEGYG 350
L +++ Y+YSTA P + T + +AGYGYGLP+SRLYARYF GDL ++SMEG+G
Sbjct: 296 LERLYNYMYSTAPPPPRDGT-----QAPLAGYGYGLPLSRLYARYFLGDLFLVSMEGHG 349
>sp|O55028|BCKD_MOUSE [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase,
mitochondrial OS=Mus musculus GN=Bckdk PE=1 SV=1
Length = 412
Score = 206 bits (525), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 118/359 (32%), Positives = 198/359 (55%), Gaps = 23/359 (6%)
Query: 3 AKKLSETFSKSLIEEVGRWGCMKQTGVSLRYMMEFGSKPTD-KNLLISAQFLHKELPIRI 61
+K ++ +++S I+ ++ T MM + + D +LL S ++L +ELP+RI
Sbjct: 47 SKTVTSFYNQSAIDVAAEKPSVRLTPT----MMLYSGRSQDGSHLLKSGRYLQQELPVRI 102
Query: 62 ARRAIELETLPYGLSEKPAVLKVRDWYLDSFRDLRSFPDIRSTSDERDFTQMIKAIKVRH 121
A R +LP+ + P +L V + Y+ +F+ L FP I+ +DE + Q+++ + H
Sbjct: 103 AHRIKGFRSLPFIIGCNPTILHVHELYIRAFQKLTDFPPIKDQADEAQYCQLVRQLLDDH 162
Query: 122 NNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIGQHVELHNPNPP 181
+VV ++A GL++ +K + +D + FLD+ SR+GIRML H+ LH P
Sbjct: 163 KDVVTLLAEGLRESRKHI------QDEKLVRYFLDKTLTSRLGIRMLATHHLALHEDKPD 216
Query: 182 PHCIGYIDTKMSPVQVARNASEHARCVCLREYGSAPDFNIYGDPSFTFPYVPSHLHLMVF 241
+G I T++SP ++ + AR +C +YG+AP I G + FP++P L ++
Sbjct: 217 --FVGIICTRLSPKKIIEKWVDFARRLCEHKYGNAPRVRINGHVAARFPFIPMPLDYILP 274
Query: 242 ELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYS 301
EL+KN++RA E ++D+ P + I +A+ D+ I++SD GGGI L ++ Y ++
Sbjct: 275 ELLKNAMRATMESHLDTPYNVPDVVITIANNDIDLIIRISDRGGGIAHKDLDRVMDYHFT 334
Query: 302 TAR--------NPLDENTDL--AADKGTMAGYGYGLPISRLYARYFGGDLQIISMEGYG 350
TA NPL + D+ G M G+G+GLP SR YA Y GG LQ+ S++G G
Sbjct: 335 TAEASTQDPRINPLFGHLDMHSGGQSGPMHGFGFGLPTSRAYAEYLGGSLQLQSLQGIG 393
>sp|Q2KJG8|BCKD_BOVIN [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase,
mitochondrial OS=Bos taurus GN=BCKDK PE=2 SV=1
Length = 412
Score = 205 bits (521), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 119/359 (33%), Positives = 199/359 (55%), Gaps = 23/359 (6%)
Query: 3 AKKLSETFSKSLIEEVGRWGCMKQTGVSLRYMMEFGSKPTD-KNLLISAQFLHKELPIRI 61
+K ++ +++S I+ ++ T MM + + D +LL SA++L +ELP+RI
Sbjct: 47 SKTVTSFYNQSAIDVAAEKPSVRLTPT----MMLYSGRSQDGSHLLKSARYLQQELPVRI 102
Query: 62 ARRAIELETLPYGLSEKPAVLKVRDWYLDSFRDLRSFPDIRSTSDERDFTQMIKAIKVRH 121
A R +LP+ + P +L V + Y+ +F+ L FP I+ +DE + Q+++ + H
Sbjct: 103 AHRIKGFRSLPFIIGCNPTILHVHELYIRAFQKLTDFPPIKDQADEARYCQLVRQLLDDH 162
Query: 122 NNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIGQHVELHNPNPP 181
+VV ++A GL++ +K + ED + FLD+ SR+GIRML H+ LH P
Sbjct: 163 KDVVTLLAEGLRESRKYI------EDEKLVRYFLDKTLTSRLGIRMLATHHLALHEDKP- 215
Query: 182 PHCIGYIDTKMSPVQVARNASEHARCVCLREYGSAPDFNIYGDPSFTFPYVPSHLHLMVF 241
+G I T++SP ++ + AR +C +YG+AP I G + FP++P L ++
Sbjct: 216 -DFVGIICTRLSPKKIIEKWVDFARRLCEHKYGNAPRVRINGHVAARFPFIPMPLDYILP 274
Query: 242 ELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYS 301
EL+KN++RA E ++D+ P + I +A+ D+ I++SD GGGI L ++ Y ++
Sbjct: 275 ELLKNAMRATMESHLDTPYNVPDVVITIANNDIDLVIRISDRGGGIAHKDLDRVMDYHFT 334
Query: 302 TAR--------NPLDENTDL--AADKGTMAGYGYGLPISRLYARYFGGDLQIISMEGYG 350
TA +PL + DL G M G+G+GLP SR YA Y GG L++ S++G G
Sbjct: 335 TAEASTQDPRISPLFGHLDLHSGGQSGPMHGFGFGLPTSRAYAEYLGGSLRLQSLQGIG 393
>sp|P53170|PKP2_YEAST Pyruvate dehydrogenase kinase 2, mitochondrial OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=PKP2 PE=1
SV=3
Length = 491
Score = 87.4 bits (215), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 68/273 (24%), Positives = 129/273 (47%), Gaps = 20/273 (7%)
Query: 29 VSLRYMMEF---GSKPTDKNLLISAQFLHKELPIRIARRAIELETLPYGLSEKPAVLKVR 85
VSL + ++ +K T ++ S +F+ +EL IRIA + +L+ LP+ + ++V
Sbjct: 80 VSLTQLAQYYDDSTKLTRTKIINSGKFVKEELVIRIAHKLNQLQQLPFNVVNNFHFVQVY 139
Query: 86 DWYLDSFRDLRSFPDIRSTSDERDFTQMIKAIKVRHNNV-VPMMALG-LQQLKKEMDPKI 143
+ Y + F R +P IR+ D F IK + N + +P + +G L+ ++ P+
Sbjct: 140 ESYYNIFESFRKYPTIRTLEDASQFADFIKNMLEGFNTLNLPHLIMGALECTILDLYPR- 198
Query: 144 VYEDLDEIHQFLDRFYMSRIGIRMLIGQHVEL-----HNPNPPPHCIGYIDTKMSPVQVA 198
+++ Q L +RI R+++ +HV + +G I + S +
Sbjct: 199 -----EKMDQLLSDLLRARISRRLIVEEHVSITANYTSGKEENTLVLGDIFQECSAKKYL 253
Query: 199 RNASEHARCVCLREYGS---APDFNIYGDPSFTFPYVPSHLHLMVFELVKNSLRAVEERY 255
ASE ++ Y P+F I GD +F ++P+HL ++ E+++N+ A + Y
Sbjct: 254 LEASEESQKFIQDMYFKDIPMPEFIIEGDTQLSFYFLPTHLKYLLGEILRNTYEATMKHY 313
Query: 256 MDSDKVAP-PIRIIVADGLEDVTIKVSDEGGGI 287
+ P PI + V E ++SD+ GG+
Sbjct: 314 IRKGLEKPEPIIVTVVSNDESYLFRISDKAGGV 346
Score = 35.0 bits (79), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 19/27 (70%)
Query: 324 GYGLPISRLYARYFGGDLQIISMEGYG 350
G GL + ++YA Y+ GDL + SM GYG
Sbjct: 443 GIGLAMCKVYAEYWNGDLSLHSMPGYG 469
>sp|P40530|PDK_YEAST [Pyruvate dehydrogenase [lipoamide]] kinase, mitochondrial
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=PKP1 PE=1 SV=1
Length = 394
Score = 85.9 bits (211), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 73/306 (23%), Positives = 143/306 (46%), Gaps = 36/306 (11%)
Query: 62 ARRAIELETLPYGLSEKPAVLKVRDWYLDSFRDLRSF---------PDIRSTSDERDFTQ 112
+R ++ LPY P + + YL S + L S P I++ FT+
Sbjct: 89 CKRLNAIQRLPYNAVINPHIERTNSLYLKSLQTLLSIAYPYELHNPPKIQA-----KFTE 143
Query: 113 MIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIGQH 172
++ H + + ++A GLQ+++ PK +I QFL+ RI +++L+ +
Sbjct: 144 LLDD----HEDAIVVLAKGLQEIQ-SCYPKF------QISQFLNFHLKERITMKLLVTHY 192
Query: 173 VELHNPN---PPPHCIGYIDTKMSPVQVARNASEHARCVCLREYGSAPDFNIYGDPS--F 227
+ L N IG + + Q+ ++ S++ +C ++ + + PS
Sbjct: 193 LSLMAQNKGDTNKRMIGILHRDLPIAQLIKHVSDYVNDICFVKFNTQRTPVLIHPPSQDI 252
Query: 228 TFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGI 287
TF +P L ++ E+ KN+ A + + + + I ++ D +++ +++ D GGGI
Sbjct: 253 TFTCIPPILEYIMTEVFKNAFEA--QIALGKEHMPIEINLLKPDD-DELYLRIRDHGGGI 309
Query: 288 PRSGLPKIFTYLYST--ARNPLDENTDLAADK-GTMAGYGYGLPISRLYARYFGGDLQII 344
+F Y YST ++ E+TDL ++ ++G G+GLP+ + Y FGG + +
Sbjct: 310 TPEVEALMFNYSYSTHTQQSADSESTDLPGEQINNVSGMGFGLPMCKTYLELFGGKIDVQ 369
Query: 345 SMEGYG 350
S+ G+G
Sbjct: 370 SLLGWG 375
>sp|Q06904|SASA_SYNE7 Adaptive-response sensory-kinase SasA OS=Synechococcus elongatus
(strain PCC 7942) GN=sasA PE=1 SV=2
Length = 387
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 52/124 (41%), Gaps = 17/124 (13%)
Query: 246 NSLRAVEERYMDSD-KVAPPIRIIVADGL----EDVTIKVSDEGGGIPRSGLPKIFTYLY 300
+ LR V +D+ K PP I L + V I +SD G GIPR L IF L
Sbjct: 274 DRLRQVLVNLLDNAIKYTPPGGTITIAALHRTSQKVQISISDTGSGIPRDQLSVIFKNLV 333
Query: 301 STARNPLDENTDLAADKGTMAGYGYGLPISRLYARYFGGDLQIISMEGYGELNMFSVLLY 360
+R+ E GYG GL + + + G + + S G G F++ +Y
Sbjct: 334 RLSRDSSQE------------GYGIGLSVCQRIVQAHFGRIWVASELGQGSTFHFTMPVY 381
Query: 361 SYCL 364
Y +
Sbjct: 382 RYTM 385
>sp|P58363|ARCB_ECO57 Aerobic respiration control sensor protein ArcB OS=Escherichia coli
O157:H7 GN=arcB PE=3 SV=1
Length = 778
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 67/147 (45%), Gaps = 25/147 (17%)
Query: 219 FNIYGDPSFTFPYV----PSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLE 274
FN+ +P+ P+ + L +++ L+ N+++ + +V +R D L
Sbjct: 380 FNL--EPTLPLPHQVITDGTRLRQILWNLISNAVK-----FTQQGQVTVRVRYDEGDMLH 432
Query: 275 DVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAADKGTMAGYGYGLPISRLYA 334
+V D G GIP+ L KIF Y D + A G G GL +SR A
Sbjct: 433 ---FEVEDSGIGIPQDELDKIFAMYYQVK----DSHGGKPA-----TGTGIGLAVSRRLA 480
Query: 335 RYFGGDLQIISMEGYGELNMFSVLLYS 361
+ GGD+ + S +G G + F++ +++
Sbjct: 481 KNMGGDITVTSEQGKG--STFTLTIHA 505
>sp|P0AEC4|ARCB_SHIFL Aerobic respiration control sensor protein ArcB OS=Shigella
flexneri GN=arcB PE=3 SV=1
Length = 778
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 67/147 (45%), Gaps = 25/147 (17%)
Query: 219 FNIYGDPSFTFPYV----PSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLE 274
FN+ +P+ P+ + L +++ L+ N+++ + +V +R D L
Sbjct: 380 FNL--EPTLPLPHQVITDGTRLRQILWNLISNAVK-----FTQQGQVTVRVRYDEGDMLH 432
Query: 275 DVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAADKGTMAGYGYGLPISRLYA 334
+V D G GIP+ L KIF Y D + A G G GL +SR A
Sbjct: 433 ---FEVEDSGIGIPQDELDKIFAMYYQVK----DSHGGKPA-----TGTGIGLAVSRRLA 480
Query: 335 RYFGGDLQIISMEGYGELNMFSVLLYS 361
+ GGD+ + S +G G + F++ +++
Sbjct: 481 KNMGGDITVTSEQGKG--STFTLTIHA 505
>sp|P0AEC3|ARCB_ECOLI Aerobic respiration control sensor protein ArcB OS=Escherichia coli
(strain K12) GN=arcB PE=1 SV=1
Length = 778
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 67/147 (45%), Gaps = 25/147 (17%)
Query: 219 FNIYGDPSFTFPYV----PSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLE 274
FN+ +P+ P+ + L +++ L+ N+++ + +V +R D L
Sbjct: 380 FNL--EPTLPLPHQVITDGTRLRQILWNLISNAVK-----FTQQGQVTVRVRYDEGDMLH 432
Query: 275 DVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAADKGTMAGYGYGLPISRLYA 334
+V D G GIP+ L KIF Y D + A G G GL +SR A
Sbjct: 433 ---FEVEDSGIGIPQDELDKIFAMYYQVK----DSHGGKPA-----TGTGIGLAVSRRLA 480
Query: 335 RYFGGDLQIISMEGYGELNMFSVLLYS 361
+ GGD+ + S +G G + F++ +++
Sbjct: 481 KNMGGDITVTSEQGKG--STFTLTIHA 505
>sp|Q45614|YYCG_BACSU Sensor histidine kinase YycG OS=Bacillus subtilis (strain 168)
GN=yycG PE=1 SV=1
Length = 611
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 10/80 (12%)
Query: 278 IKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAADKGTMAGYGYGLPISRLYARYF 337
I V DEG GIP+ + K+F Y + A + G G GL I++ +
Sbjct: 529 ISVKDEGIGIPKKDVEKVFDRFYRVDK----------ARTRKLGGTGLGLAIAKEMVQAH 578
Query: 338 GGDLQIISMEGYGELNMFSV 357
GGD+ S+EG G F++
Sbjct: 579 GGDIWADSIEGKGTTITFTL 598
>sp|Q04943|AFSQ2_STRCO Signal transduction histidine-protein kinase AfsQ2 OS=Streptomyces
coelicolor (strain ATCC BAA-471 / A3(2) / M145) GN=afsQ2
PE=3 SV=1
Length = 535
Score = 42.4 bits (98), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 48/110 (43%), Gaps = 23/110 (20%)
Query: 233 PSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGL 292
P L +++ L+ N+L+ P+R+ VA ++ I+V D G GIP L
Sbjct: 403 PRRLDVILANLIGNALK----------HGGSPVRVSVARADHEIVIRVRDNGPGIPEDVL 452
Query: 293 PKIFTYLY-STARNPLDENTDLAADKGTMAGYGYGLPISRLYARYFGGDL 341
P +F Y ++A P E G G GL I+ A GG++
Sbjct: 453 PHVFDRFYKASASRPRSE------------GSGLGLSIALENAHIHGGEI 490
>sp|Q2JWK9|SASA_SYNJA Adaptive-response sensory-kinase SasA OS=Synechococcus sp. (strain
JA-3-3Ab) GN=sasA PE=3 SV=1
Length = 377
Score = 42.4 bits (98), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 59/153 (38%), Gaps = 24/153 (15%)
Query: 215 SAPDFNIYGDPSFTFPYV---PSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRI-IVA 270
A D P V P + ++F L+ N+++ IR+ I+
Sbjct: 243 QAKQLQFQADIPVDLPTVHVDPDKIRQVIFNLLDNAIKYT--------PAGGSIRLNILH 294
Query: 271 DGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAADKGTMAGYGYGLPIS 330
+ V + VSD G GIP + IF+ +R+ E GYG GL +
Sbjct: 295 RTSQKVQVTVSDTGPGIPEAEQENIFSDAVRLSRDQQQE------------GYGIGLSLC 342
Query: 331 RLYARYFGGDLQIISMEGYGELNMFSVLLYSYC 363
R R G + + S+ G G F++ +Y C
Sbjct: 343 RRIVRAHYGQIWVESILGKGSSFHFTLPVYRLC 375
>sp|P07168|VIRAW_RHIRD Wide host range VirA protein OS=Rhizobium radiobacter GN=virA PE=3
SV=1
Length = 829
Score = 42.0 bits (97), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 43/92 (46%), Gaps = 20/92 (21%)
Query: 264 PIRIIVADGL----EDVTIKVSDEGGGIPRSGLPKIFTYLYST-ARNPLDENTDLAADKG 318
P++ I+A G+ + V + +SD GGGIP + LP IF +ST ARN
Sbjct: 607 PVKKILAHGVMPPGDYVLLSISDNGGGIPEAVLPHIFEPFFSTRARN------------- 653
Query: 319 TMAGYGYGLPISRLYARYFGGDLQIISMEGYG 350
G G GL + F G + + S G+G
Sbjct: 654 --GGTGLGLASVHGHISAFAGYIDVSSTVGHG 683
>sp|Q12WQ0|TOP6B_METBU Type 2 DNA topoisomerase 6 subunit B OS=Methanococcoides burtonii
(strain DSM 6242) GN=top6B PE=3 SV=1
Length = 622
Score = 42.0 bits (97), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 49/111 (44%), Gaps = 12/111 (10%)
Query: 229 FPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIP 288
F P L V E V NSL A EE + D + R+ G ++V++ V D G GI
Sbjct: 31 FDSAPRSLITTVKEAVDNSLDACEEAEILPDILLHIERV----GKDNVSVIVEDNGPGIV 86
Query: 289 RSGLPKIFTYLYSTARNPLDENTDLAADKGTMAGYGYGLPISRLYARYFGG 339
+ +PK+F L +R A K + G G+ S LYA+ G
Sbjct: 87 KEQIPKVFAKLLYGSR--------FHALKQSRGQQGIGISASVLYAQLTAG 129
>sp|P10799|VIRA_AGRT9 Wide host range VirA protein OS=Agrobacterium tumefaciens (strain
15955) GN=virA PE=1 SV=1
Length = 829
Score = 41.2 bits (95), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 43/92 (46%), Gaps = 20/92 (21%)
Query: 264 PIRIIVADGL----EDVTIKVSDEGGGIPRSGLPKIFTYLYST-ARNPLDENTDLAADKG 318
P++ I+A G+ + V + +SD GGGIP + LP IF ++T ARN
Sbjct: 607 PVKKILAHGVMPPGDYVLLSISDNGGGIPEAVLPHIFEPFFTTRARN------------- 653
Query: 319 TMAGYGYGLPISRLYARYFGGDLQIISMEGYG 350
G G GL + F G + + S G+G
Sbjct: 654 --GGTGLGLASVHGHISAFAGYIDVSSTVGHG 683
>sp|Q8TQF7|TOP6B_METAC Type 2 DNA topoisomerase 6 subunit B OS=Methanosarcina acetivorans
(strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A)
GN=top6B PE=3 SV=1
Length = 621
Score = 41.2 bits (95), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 53/122 (43%), Gaps = 15/122 (12%)
Query: 229 FPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLED-VTIKVSDEGGGI 287
F P L V E V NSL A EE + P I + V +D VT+ + D G GI
Sbjct: 31 FDSAPRSLITTVKEAVDNSLDACEEA-----GILPDILVQVERTGQDYVTVIIEDNGPGI 85
Query: 288 PRSGLPKIFTYLYSTARNPLDENTDLAADKGTMAGYGYGLPISRLYARYFGG-DLQIISM 346
R +PK+F L +R A K + G G+ + LYA+ G +I+S
Sbjct: 86 VREQIPKVFAKLLYGSR--------FHALKQSRGQQGIGISAAVLYAQMTAGRHTKILSK 137
Query: 347 EG 348
G
Sbjct: 138 TG 139
>sp|Q7BWI3|SASA_PROMA Adaptive-response sensory-kinase SasA OS=Prochlorococcus marinus
(strain SARG / CCMP1375 / SS120) GN=sasA PE=3 SV=1
Length = 381
Score = 40.4 bits (93), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 37/85 (43%), Gaps = 11/85 (12%)
Query: 276 VTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAADKGTMAGYGYGLPISRLYAR 335
V I VSD+G GIP +IF R P N +G+G GL + R
Sbjct: 293 VQISVSDKGPGIPEEEQQRIF---LDRVRLPQTSNE--------TSGFGIGLSVCRRIVE 341
Query: 336 YFGGDLQIISMEGYGELNMFSVLLY 360
GG + ++S G G F+V ++
Sbjct: 342 VHGGKIWVVSQPGEGSCFYFTVPVW 366
>sp|A2BRQ6|SASA_PROMS Adaptive-response sensory-kinase SasA OS=Prochlorococcus marinus
(strain AS9601) GN=sasA PE=3 SV=1
Length = 372
Score = 40.4 bits (93), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 11/85 (12%)
Query: 276 VTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAADKGTMAGYGYGLPISRLYAR 335
V I + D+G GIP S +IF LD +GT +G+G GL + R +
Sbjct: 286 VEITICDKGAGIPLSEQKRIF----------LDRVRLPQTSEGT-SGFGIGLSVCRRIVQ 334
Query: 336 YFGGDLQIISMEGYGELNMFSVLLY 360
GG + ++S G G F+V ++
Sbjct: 335 VHGGRIWVVSEVGVGSCFHFTVPVW 359
>sp|Q468I5|TOP6B_METBF Type 2 DNA topoisomerase 6 subunit B OS=Methanosarcina barkeri
(strain Fusaro / DSM 804) GN=top6B PE=3 SV=1
Length = 621
Score = 40.4 bits (93), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 54/124 (43%), Gaps = 15/124 (12%)
Query: 229 FPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRI-IVADGLEDVTIKVSDEGGGI 287
F P L V E V N+L A EE + P I + I G + VT+ + D G GI
Sbjct: 31 FDSAPRSLITTVKEAVDNALDACEEA-----GILPDILVQIERTGQDYVTVIIEDNGPGI 85
Query: 288 PRSGLPKIFTYLYSTARNPLDENTDLAADKGTMAGYGYGLPISRLYARYFGG-DLQIISM 346
+ +PK+F L +R A K + G G+ + LYA+ G +I+S
Sbjct: 86 IKEQIPKVFAKLLYGSR--------FHALKQSRGQQGIGISAAVLYAQMTAGKQTKILSK 137
Query: 347 EGYG 350
G G
Sbjct: 138 TGSG 141
>sp|A3PDI2|SASA_PROM0 Adaptive-response sensory-kinase SasA OS=Prochlorococcus marinus
(strain MIT 9301) GN=sasA PE=3 SV=1
Length = 372
Score = 40.4 bits (93), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 11/85 (12%)
Query: 276 VTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAADKGTMAGYGYGLPISRLYAR 335
V I + D+G GIP S +IF LD +GT +G+G GL + R +
Sbjct: 286 VEITICDKGAGIPLSEQKRIF----------LDRVRLPQTSEGT-SGFGIGLSVCRRIVQ 334
Query: 336 YFGGDLQIISMEGYGELNMFSVLLY 360
GG + ++S G G F+V ++
Sbjct: 335 VHGGRIWVVSEVGVGSCFHFTVPVW 359
>sp|Q2JKD9|SASA_SYNJB Adaptive-response sensory-kinase SasA OS=Synechococcus sp. (strain
JA-2-3B'a(2-13)) GN=sasA PE=3 SV=1
Length = 377
Score = 39.7 bits (91), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 38/90 (42%), Gaps = 12/90 (13%)
Query: 274 EDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAADKGTMAGYGYGLPISRLY 333
+ V + VSD G GIP + IF+ +R+ E GYG GL + R
Sbjct: 298 QKVQVTVSDTGPGIPEADQESIFSDSVRLSRDQQQE------------GYGIGLSLCRRI 345
Query: 334 ARYFGGDLQIISMEGYGELNMFSVLLYSYC 363
R G + + S G G F++ +Y C
Sbjct: 346 VRAHYGQIWVESSLGKGSSFHFTLPVYRLC 375
>sp|Q7V113|SASA_PROMP Adaptive-response sensory-kinase SasA OS=Prochlorococcus marinus
subsp. pastoris (strain CCMP1986 / MED4) GN=sasA PE=3
SV=1
Length = 372
Score = 39.3 bits (90), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 39/86 (45%), Gaps = 11/86 (12%)
Query: 276 VTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAADKGTMAGYGYGLPISRLYAR 335
V I + D+G GIP S +IF LD +GT +G+G GL + R
Sbjct: 286 VEITICDKGAGIPVSEQKRIF----------LDRVRLPQTSEGT-SGFGIGLSVCRRIVE 334
Query: 336 YFGGDLQIISMEGYGELNMFSVLLYS 361
GG + ++S G G F+V ++
Sbjct: 335 VHGGRIWVVSEVGEGSCFHFTVPVWQ 360
>sp|O49230|ETR1_BRAOL Ethylene receptor 1 OS=Brassica oleracea GN=ETR1 PE=2 SV=1
Length = 735
Score = 39.3 bits (90), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 52/121 (42%), Gaps = 19/121 (15%)
Query: 239 MVFELVKNSLR-------AVEERYMDSDKVAPPIRIIVADGLED-VTIKVSDEGGGIPRS 290
++ +V N+++ +V SD APP +V G + +KV D G GI
Sbjct: 463 IILNIVGNAVKFSKQGSISVTALVTKSDNRAPPDFFVVPTGSHFYLRVKVKDLGAGINPQ 522
Query: 291 GLPKIFTYLYSTARNPLDENTDLAADKGTMAGYGYGLPISRLYARYFGGDLQIISMEGYG 350
+PK+FT T LA G G GL IS+ + G++ I S EG G
Sbjct: 523 DIPKLFTKFAQTQ--------SLATRSS--GGSGLGLAISKRFVNLMEGNIWIES-EGVG 571
Query: 351 E 351
+
Sbjct: 572 K 572
>sp|Q4A159|WALK_STAS1 Sensor protein kinase WalK OS=Staphylococcus saprophyticus subsp.
saprophyticus (strain ATCC 15305 / DSM 20229) GN=walK
PE=3 SV=1
Length = 610
Score = 38.9 bits (89), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 33/75 (44%), Gaps = 10/75 (13%)
Query: 276 VTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAADKGTMAGYGYGLPISRLYAR 335
+TI+V D G GIP + + KIF Y + A M G G GL IS+
Sbjct: 526 MTIRVKDNGIGIPINKVDKIFDRFYRVDK----------ARTRKMGGTGLGLAISKEIVE 575
Query: 336 YFGGDLQIISMEGYG 350
G + S+EG G
Sbjct: 576 AHNGRIWANSVEGQG 590
>sp|Q8PUB8|TOP6B_METMA Type 2 DNA topoisomerase 6 subunit B OS=Methanosarcina mazei
(strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833
/ OCM 88) GN=top6B PE=1 SV=1
Length = 621
Score = 38.9 bits (89), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 48/112 (42%), Gaps = 14/112 (12%)
Query: 229 FPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVA-DGLEDVTIKVSDEGGGI 287
F P L V E V N+L A EE + P I + V G + VT+ + D G GI
Sbjct: 31 FDSAPRSLITTVKEAVDNALDACEEA-----GILPDILVQVERTGPDYVTVIIEDNGPGI 85
Query: 288 PRSGLPKIFTYLYSTARNPLDENTDLAADKGTMAGYGYGLPISRLYARYFGG 339
R +PK+F L +R A K + G G+ + LYA+ G
Sbjct: 86 VREQIPKVFAKLLYGSR--------FHALKQSRGQQGIGISAAVLYAQMTAG 129
>sp|Q8DMT2|SASA_THEEB Adaptive-response sensory-kinase SasA OS=Thermosynechococcus
elongatus (strain BP-1) GN=sasA PE=3 SV=1
Length = 380
Score = 38.9 bits (89), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 38/88 (43%), Gaps = 12/88 (13%)
Query: 274 EDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAADKGTMAGYGYGLPISRLY 333
+ V + VSD G GIP KIF E L D+ + GYG GL + R
Sbjct: 305 QKVQVTVSDTGPGIPIEQQEKIF-----------GETVRLDRDRA-IEGYGIGLALCRQI 352
Query: 334 ARYFGGDLQIISMEGYGELNMFSVLLYS 361
R G + + S G G F++ +YS
Sbjct: 353 IRMHYGQIWVDSQPGKGSCFHFTLPVYS 380
>sp|Q9RDT3|WALK_STAAU Sensor protein kinase WalK (Fragment) OS=Staphylococcus aureus
GN=walK PE=1 SV=1
Length = 415
Score = 38.5 bits (88), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 33/75 (44%), Gaps = 10/75 (13%)
Query: 276 VTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAADKGTMAGYGYGLPISRLYAR 335
+TI++ D G GIP + + KIF Y + A M G G GL IS+
Sbjct: 332 MTIRIKDNGIGIPINKVDKIFDRFYRVDK----------ARTRKMGGTGLGLAISKEIVE 381
Query: 336 YFGGDLQIISMEGYG 350
G + S+EG G
Sbjct: 382 AHNGRIWANSVEGQG 396
>sp|Q31AE8|SASA_PROM9 Adaptive-response sensory-kinase SasA OS=Prochlorococcus marinus
(strain MIT 9312) GN=sasA PE=3 SV=1
Length = 372
Score = 38.5 bits (88), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 40/86 (46%), Gaps = 11/86 (12%)
Query: 276 VTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAADKGTMAGYGYGLPISRLYAR 335
V I + D+G GIP + +IF LD +GT +G+G GL + R +
Sbjct: 286 VEITICDKGAGIPLNEQKRIF----------LDRVRLPQTSEGT-SGFGIGLSVCRRIVQ 334
Query: 336 YFGGDLQIISMEGYGELNMFSVLLYS 361
GG + ++S G G F+V ++
Sbjct: 335 VHGGRIWVVSEIGVGSCFHFTVPVWQ 360
>sp|Q4LAJ8|WALK_STAHJ Sensor protein kinase WalK OS=Staphylococcus haemolyticus (strain
JCSC1435) GN=walK PE=3 SV=1
Length = 608
Score = 38.5 bits (88), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 33/75 (44%), Gaps = 10/75 (13%)
Query: 276 VTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAADKGTMAGYGYGLPISRLYAR 335
+TI++ D G GIP + + KIF Y + A M G G GL IS+
Sbjct: 524 MTIRIKDNGIGIPINKVDKIFDRFYRVDK----------ARTRKMGGTGLGLAISKEIVE 573
Query: 336 YFGGDLQIISMEGYG 350
G + S+EG G
Sbjct: 574 AHNGRIWANSVEGQG 588
>sp|P94414|YCLK_BACSU Sensor histidine kinase YclK OS=Bacillus subtilis (strain 168)
GN=yclK PE=3 SV=1
Length = 473
Score = 38.5 bits (88), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 34/80 (42%), Gaps = 9/80 (11%)
Query: 271 DGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAADKGTMAGYGYGLPIS 330
+G ++ I++ D G GIP+ + I+ Y D++ YG GL I
Sbjct: 389 EGYKETIIEIEDTGIGIPKEDIEHIWERFYK---------ADISRTNTAYGEYGLGLSIV 439
Query: 331 RLYARYFGGDLQIISMEGYG 350
R G ++I S EG G
Sbjct: 440 RQLVEMHQGTVEIKSEEGKG 459
>sp|P41503|NTRB_RHILP Nitrogen regulation protein NtrB OS=Rhizobium leguminosarum bv.
phaseoli GN=ntrB PE=3 SV=1
Length = 383
Score = 38.5 bits (88), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 56/145 (38%), Gaps = 28/145 (19%)
Query: 224 DPSFTFPYVPSHLHLMVF-ELVKNSLRAVEER----YMDSDKVAPPIRIIVADGLEDVTI 278
DPS Y + VF LVKN+ AV +R M + P IR+ VA E +++
Sbjct: 237 DPSLPAVYANRDQLVQVFLNLVKNAAEAVGDRPDGEIMLTTAYRPGIRLSVAGTREKISL 296
Query: 279 K----VSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAADKGTMAGYGYGLPISRLYA 334
V D G G+P LP +F +T N G G GL L A
Sbjct: 297 PLEFCVHDNGPGVPADLLPHLFDPFITTKTN----------------GSGLGLA---LVA 337
Query: 335 RYFGGDLQIISMEGYGELNMFSVLL 359
+ G II + F VL+
Sbjct: 338 KIIGDHGGIIECDSQNSRTTFRVLM 362
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.139 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 141,271,394
Number of Sequences: 539616
Number of extensions: 6236447
Number of successful extensions: 13629
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 95
Number of HSP's that attempted gapping in prelim test: 13442
Number of HSP's gapped (non-prelim): 130
length of query: 368
length of database: 191,569,459
effective HSP length: 119
effective length of query: 249
effective length of database: 127,355,155
effective search space: 31711433595
effective search space used: 31711433595
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)