Query 017683
Match_columns 368
No_of_seqs 276 out of 2835
Neff 9.4
Searched_HMMs 46136
Date Fri Mar 29 02:32:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017683.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017683hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0787 Dehydrogenase kinase [ 100.0 4.6E-45 1E-49 323.6 35.2 343 12-361 36-382 (414)
2 COG5002 VicK Signal transducti 100.0 4.2E-37 9.1E-42 270.5 16.6 231 105-361 220-450 (459)
3 COG2205 KdpD Osmosensitive K+ 100.0 1.8E-34 4E-39 279.5 21.3 227 105-362 655-882 (890)
4 COG4191 Signal transduction hi 100.0 1.1E-33 2.3E-38 266.3 25.2 273 49-360 328-602 (603)
5 PRK09303 adaptive-response sen 100.0 3.8E-33 8.2E-38 265.3 24.2 229 108-361 149-379 (380)
6 PRK10618 phosphotransfer inter 100.0 1.4E-31 3E-36 275.6 22.2 221 108-360 448-673 (894)
7 PRK11006 phoR phosphate regulo 100.0 5.1E-31 1.1E-35 255.1 23.7 222 109-360 203-424 (430)
8 PRK15347 two component system 100.0 7.2E-30 1.6E-34 269.3 26.2 217 110-361 398-616 (921)
9 PRK10815 sensor protein PhoQ; 100.0 3.9E-29 8.4E-34 244.6 27.4 218 108-362 264-481 (485)
10 PRK10841 hybrid sensory kinase 100.0 5.8E-30 1.3E-34 266.8 22.4 220 110-360 447-668 (924)
11 TIGR02956 TMAO_torS TMAO reduc 100.0 1.2E-29 2.5E-34 269.1 24.4 221 108-361 462-685 (968)
12 PRK11091 aerobic respiration c 100.0 8.1E-30 1.8E-34 264.1 22.1 222 110-361 283-507 (779)
13 PRK11107 hybrid sensory histid 100.0 3E-29 6.5E-34 264.6 24.0 221 110-361 293-520 (919)
14 PRK11466 hybrid sensory histid 100.0 2.2E-29 4.8E-34 265.4 22.8 221 108-361 442-664 (914)
15 PRK10604 sensor protein RstB; 100.0 2.6E-28 5.5E-33 236.3 28.1 240 77-362 187-426 (433)
16 PRK10549 signal transduction h 100.0 2.5E-28 5.5E-33 238.6 28.3 247 77-362 215-461 (466)
17 TIGR02938 nifL_nitrog nitrogen 100.0 8E-29 1.7E-33 243.1 24.7 220 108-359 274-494 (494)
18 COG3852 NtrB Signal transducti 100.0 4.5E-29 9.7E-34 216.9 19.9 215 109-361 131-356 (363)
19 PRK10490 sensor protein KdpD; 100.0 6.2E-29 1.3E-33 258.1 22.9 220 110-361 664-884 (895)
20 PRK10364 sensor protein ZraS; 100.0 1.1E-28 2.4E-33 240.6 23.4 215 108-361 235-450 (457)
21 PRK10755 sensor protein BasS/P 100.0 1.5E-27 3.3E-32 225.2 28.4 236 79-361 114-352 (356)
22 PRK13837 two-component VirA-li 100.0 1.9E-28 4.1E-33 254.6 22.8 217 105-361 445-677 (828)
23 TIGR03785 marine_sort_HK prote 100.0 6E-28 1.3E-32 245.3 24.3 243 77-358 460-703 (703)
24 TIGR01386 cztS_silS_copS heavy 100.0 2.9E-27 6.4E-32 230.3 27.4 240 79-358 218-457 (457)
25 COG5000 NtrY Signal transducti 100.0 1.4E-27 3E-32 224.5 22.0 228 103-359 479-708 (712)
26 COG4251 Bacteriophytochrome (l 100.0 8E-28 1.7E-32 226.6 19.8 222 108-361 522-743 (750)
27 PRK09835 sensor kinase CusS; P 100.0 7.2E-27 1.6E-31 229.3 25.7 243 79-360 239-481 (482)
28 PRK11100 sensory histidine kin 100.0 1.1E-26 2.4E-31 227.3 26.6 243 77-360 232-474 (475)
29 TIGR02916 PEP_his_kin putative 100.0 3.4E-27 7.3E-32 240.4 23.5 210 104-358 469-679 (679)
30 TIGR02966 phoR_proteo phosphat 100.0 5.9E-27 1.3E-31 218.2 22.8 219 111-357 115-333 (333)
31 PRK10337 sensor protein QseC; 100.0 1.9E-26 4.2E-31 224.4 26.0 236 78-357 213-449 (449)
32 PRK09959 hybrid sensory histid 100.0 5.1E-27 1.1E-31 253.7 22.7 221 109-361 711-938 (1197)
33 PRK09470 cpxA two-component se 99.9 1.3E-25 2.8E-30 219.1 28.2 241 77-361 218-459 (461)
34 PRK11073 glnL nitrogen regulat 99.9 5.2E-26 1.1E-30 214.0 23.1 209 109-360 129-348 (348)
35 PRK09467 envZ osmolarity senso 99.9 2.7E-25 5.9E-30 215.4 27.6 230 77-360 204-434 (435)
36 PRK11360 sensory histidine kin 99.9 9E-26 1.9E-30 226.8 22.0 215 108-362 388-604 (607)
37 PRK13557 histidine kinase; Pro 99.9 6.8E-25 1.5E-29 218.0 21.1 221 107-361 160-396 (540)
38 COG0642 BaeS Signal transducti 99.9 3.4E-24 7.4E-29 198.4 22.6 218 110-362 115-332 (336)
39 COG4192 Signal transduction hi 99.9 5.4E-23 1.2E-27 187.3 20.9 271 49-360 395-667 (673)
40 PRK11086 sensory histidine kin 99.9 1.1E-22 2.4E-27 202.5 20.6 125 216-362 411-538 (542)
41 PRK15053 dpiB sensor histidine 99.9 3.1E-22 6.7E-27 199.6 22.1 203 108-361 336-541 (545)
42 PF02518 HATPase_c: Histidine 99.9 5E-23 1.1E-27 161.2 10.0 110 231-359 1-110 (111)
43 PRK13560 hypothetical protein; 99.9 1.5E-21 3.3E-26 203.1 23.5 201 109-361 604-805 (807)
44 PF10436 BCDHK_Adom3: Mitochon 99.9 6.9E-21 1.5E-25 157.6 16.5 159 27-188 1-162 (164)
45 COG3290 CitA Signal transducti 99.9 7.2E-21 1.6E-25 178.9 18.4 204 104-361 327-533 (537)
46 PRK11644 sensory histidine kin 99.9 1.8E-20 3.9E-25 183.7 21.4 192 111-359 303-494 (495)
47 PRK13559 hypothetical protein; 99.8 1.7E-18 3.8E-23 163.7 20.2 188 109-360 169-360 (361)
48 PRK10547 chemotaxis protein Ch 99.8 1.4E-17 2.9E-22 165.8 23.1 155 192-361 343-525 (670)
49 PRK10600 nitrate/nitrite senso 99.8 1.3E-17 2.8E-22 167.1 21.7 161 149-361 396-558 (569)
50 PRK10935 nitrate/nitrite senso 99.8 1.7E-17 3.8E-22 166.2 21.2 190 115-361 365-561 (565)
51 COG0643 CheA Chemotaxis protei 99.7 3.1E-16 6.6E-21 156.8 14.4 154 192-360 390-574 (716)
52 smart00387 HATPase_c Histidine 99.6 2.8E-15 6E-20 115.9 10.1 110 231-359 1-110 (111)
53 PRK04184 DNA topoisomerase VI 99.6 2E-15 4.2E-20 145.5 11.1 115 231-359 32-152 (535)
54 COG4585 Signal transduction hi 99.5 7.6E-13 1.7E-17 125.4 18.1 89 233-359 277-365 (365)
55 TIGR01925 spIIAB anti-sigma F 99.5 1.3E-13 2.8E-18 111.9 10.5 100 233-357 37-136 (137)
56 COG3850 NarQ Signal transducti 99.5 3.4E-12 7.3E-17 120.0 20.8 191 114-360 376-569 (574)
57 cd00075 HATPase_c Histidine ki 99.5 1.7E-13 3.7E-18 104.2 9.2 103 236-357 1-103 (103)
58 COG3920 Signal transduction hi 99.5 1.3E-11 2.9E-16 107.6 21.6 194 112-362 21-218 (221)
59 PRK03660 anti-sigma F factor; 99.5 5.4E-13 1.2E-17 109.5 12.0 107 232-363 36-142 (146)
60 TIGR01052 top6b DNA topoisomer 99.5 3.8E-13 8.2E-18 128.5 10.8 111 229-353 22-134 (488)
61 PRK14868 DNA topoisomerase VI 99.4 3.4E-13 7.3E-18 132.8 9.2 118 229-358 40-160 (795)
62 PRK14867 DNA topoisomerase VI 99.4 9.1E-13 2E-17 129.6 11.8 113 235-360 36-150 (659)
63 PRK04069 serine-protein kinase 99.3 3.6E-11 7.8E-16 100.2 10.7 105 233-360 40-144 (161)
64 COG3851 UhpB Signal transducti 99.2 1.5E-09 3.2E-14 97.5 20.2 187 113-359 306-494 (497)
65 COG3275 LytS Putative regulato 99.2 1E-09 2.2E-14 102.0 17.3 157 166-362 395-554 (557)
66 PF14501 HATPase_c_5: GHKL dom 99.2 6.7E-10 1.4E-14 84.8 12.9 99 232-358 2-100 (100)
67 TIGR01924 rsbW_low_gc serine-p 99.1 7.8E-10 1.7E-14 91.8 11.4 103 234-359 41-143 (159)
68 COG2972 Predicted signal trans 99.1 8E-09 1.7E-13 100.7 17.8 124 210-361 328-454 (456)
69 COG4564 Signal transduction hi 98.9 1.2E-07 2.6E-12 84.4 17.6 128 191-360 319-448 (459)
70 PF13581 HATPase_c_2: Histidin 98.7 1.1E-07 2.4E-12 75.6 9.8 95 234-356 30-124 (125)
71 COG1389 DNA topoisomerase VI, 98.7 1.4E-07 3E-12 87.6 10.1 110 234-357 35-148 (538)
72 TIGR00585 mutl DNA mismatch re 98.5 4.4E-07 9.6E-12 83.9 8.5 60 235-305 22-81 (312)
73 COG2172 RsbW Anti-sigma regula 98.5 2.7E-06 5.8E-11 69.2 11.6 93 234-350 39-131 (146)
74 KOG0519 Sensory transduction h 98.5 5.6E-08 1.2E-12 100.1 2.2 190 148-361 250-490 (786)
75 PF13589 HATPase_c_3: Histidin 98.1 8.2E-07 1.8E-11 71.8 0.7 101 237-358 4-106 (137)
76 PRK00095 mutL DNA mismatch rep 97.9 3.2E-05 6.9E-10 78.0 7.5 60 235-305 22-81 (617)
77 PRK05559 DNA topoisomerase IV 97.7 0.00011 2.3E-09 74.2 7.2 88 233-335 35-130 (631)
78 PF00512 HisKA: His Kinase A ( 97.6 0.00016 3.5E-09 50.5 5.6 63 110-178 2-65 (68)
79 PRK05218 heat shock protein 90 97.2 0.00056 1.2E-08 68.9 6.3 60 238-299 29-96 (613)
80 PTZ00272 heat shock protein 83 97.1 0.00053 1.1E-08 69.4 4.6 58 239-296 29-92 (701)
81 COG0323 MutL DNA mismatch repa 97.0 0.00031 6.6E-09 70.9 2.2 60 235-305 23-82 (638)
82 PRK05644 gyrB DNA gyrase subun 96.8 0.0014 3.1E-08 66.2 4.9 50 233-291 35-84 (638)
83 smart00433 TOP2c Topoisomerase 96.8 0.0018 3.9E-08 65.1 5.2 48 236-292 2-49 (594)
84 PTZ00130 heat shock protein 90 96.7 0.0024 5.2E-08 65.2 5.7 119 240-358 93-241 (814)
85 PRK14083 HSP90 family protein; 96.7 0.002 4.4E-08 64.4 4.9 58 238-296 26-83 (601)
86 TIGR01055 parE_Gneg DNA topois 96.6 0.0037 8E-08 63.1 6.1 86 235-336 30-124 (625)
87 TIGR01059 gyrB DNA gyrase, B s 96.6 0.0053 1.1E-07 62.5 7.2 50 233-291 28-77 (654)
88 cd00082 HisKA Histidine Kinase 96.3 0.041 8.8E-07 36.8 8.1 62 110-177 4-65 (65)
89 PRK14939 gyrB DNA gyrase subun 96.0 0.0075 1.6E-07 61.7 4.6 49 234-291 36-84 (756)
90 smart00388 HisKA His Kinase A 95.6 0.09 2E-06 35.3 7.4 61 111-178 3-63 (66)
91 COG0326 HtpG Molecular chapero 95.3 0.02 4.3E-07 56.7 4.3 95 238-335 30-134 (623)
92 TIGR01058 parE_Gpos DNA topois 94.3 0.043 9.4E-07 55.5 3.9 50 233-291 32-81 (637)
93 PF10090 DUF2328: Uncharacteri 94.1 3 6.5E-05 35.2 14.1 99 233-356 83-181 (182)
94 COG5381 Uncharacterized protei 94.0 0.048 1E-06 43.2 2.8 48 235-291 63-110 (184)
95 KOG1979 DNA mismatch repair pr 93.4 0.045 9.8E-07 53.1 2.0 55 238-303 30-84 (694)
96 PTZ00108 DNA topoisomerase 2-l 93.2 0.15 3.3E-06 55.6 5.7 53 235-291 57-109 (1388)
97 KOG1978 DNA mismatch repair pr 92.9 0.081 1.8E-06 52.5 3.0 58 236-304 21-78 (672)
98 PHA02569 39 DNA topoisomerase 92.7 0.081 1.8E-06 53.2 2.8 51 235-292 45-95 (602)
99 COG5385 Uncharacterized protei 92.6 4.9 0.00011 32.9 15.6 195 113-357 18-212 (214)
100 COG0187 GyrB Type IIA topoisom 92.2 0.054 1.2E-06 53.5 0.8 50 234-292 35-84 (635)
101 PLN03128 DNA topoisomerase 2; 92.0 0.27 5.8E-06 53.0 5.7 50 235-291 52-101 (1135)
102 PLN03237 DNA topoisomerase 2; 91.3 0.32 7E-06 53.1 5.4 50 235-291 77-126 (1465)
103 KOG1977 DNA mismatch repair pr 90.6 0.23 5E-06 49.6 3.3 59 235-305 21-79 (1142)
104 PTZ00109 DNA gyrase subunit b; 90.0 0.058 1.3E-06 55.8 -1.4 50 233-291 127-176 (903)
105 KOG0020 Endoplasmic reticulum 74.9 2.8 6E-05 40.4 3.0 55 238-292 98-158 (785)
106 KOG0019 Molecular chaperone (H 74.4 3.2 6.9E-05 41.1 3.4 99 237-336 59-163 (656)
107 COG4191 Signal transduction hi 66.9 21 0.00046 35.6 7.2 40 113-157 375-415 (603)
108 COG2865 Predicted transcriptio 62.4 89 0.0019 30.6 10.4 139 194-359 238-380 (467)
109 KOG0355 DNA topoisomerase type 61.0 9.6 0.00021 39.3 3.7 50 235-292 53-102 (842)
110 PF07492 Trehalase_Ca-bi: Neut 47.6 17 0.00036 20.6 1.7 15 271-285 9-23 (30)
111 COG0813 DeoD Purine-nucleoside 45.6 35 0.00075 29.6 4.2 55 225-289 15-69 (236)
112 PF14689 SPOB_a: Sensor_kinase 44.7 73 0.0016 21.5 5.0 47 106-163 8-54 (62)
113 PF07568 HisKA_2: Histidine ki 43.7 1.1E+02 0.0024 21.4 8.3 73 117-207 2-74 (76)
114 PF01106 NifU: NifU-like domai 38.4 38 0.00082 23.4 2.8 26 330-357 8-33 (68)
115 PF03891 DUF333: Domain of unk 33.0 1.3E+02 0.0027 19.5 4.4 33 330-362 7-39 (50)
116 COG2805 PilT Tfp pilus assembl 30.5 3.5E+02 0.0077 25.1 8.2 132 192-350 3-137 (353)
117 PF09182 PuR_N: Bacterial puri 28.1 1.3E+02 0.0027 21.0 3.9 28 326-353 40-68 (70)
118 COG5436 Predicted integral mem 26.7 88 0.0019 25.5 3.4 92 243-359 66-160 (182)
119 KOG4013 Predicted Cu2+ homeost 24.9 81 0.0017 26.8 3.0 25 324-350 164-188 (255)
120 KOG3438 DNA-directed RNA polym 24.4 1.5E+02 0.0032 22.3 3.9 37 244-288 29-69 (105)
121 PF00367 PTS_EIIB: phosphotran 21.1 92 0.002 18.4 2.0 29 330-358 1-29 (35)
No 1
>KOG0787 consensus Dehydrogenase kinase [Signal transduction mechanisms]
Probab=100.00 E-value=4.6e-45 Score=323.61 Aligned_cols=343 Identities=42% Similarity=0.739 Sum_probs=309.5
Q ss_pred HHHHHHHHHhhcCCCCCCCHHHHHhcCCCCChHHHHHHHHHHHHHhHHHHHHHHHHHhcCCccccCChhHHHHHHHHHHH
Q 017683 12 KSLIEEVGRWGCMKQTGVSLRYMMEFGSKPTDKNLLISAQFLHKELPIRIARRAIELETLPYGLSEKPAVLKVRDWYLDS 91 (368)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~l~~rv~~r~~~l~~~~~~l~~~~~i~~~~~~~~~~ 91 (368)
..+.+.|..|+.+++.|+++.|+++|+.+++......+..+++++|+.|+|+|+++++.+|+.+..+|++..+..||.++
T Consensus 36 ~~~~~~i~~~s~f~pspls~kq~l~fg~~~t~~~e~~S~~flr~ELpvRlA~~lkeiq~LP~nl~~npsi~~V~s~Y~~s 115 (414)
T KOG0787|consen 36 PSLPEYINPYSSFPPSPLSLKQFLDFGSDLTNACEKTSGIFLRQELPVRLANRLKEIQLLPFNLVNNPSIQLVQSWYIRS 115 (414)
T ss_pred cchHHHhchhhcCCCCcccHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhccCchHHHHHHHHHHH
Confidence 35889999999999999999999999998888888889999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCCCC-chhHHHHHHHHHHHHHhccCcHHHHHHHHHHHhhccCcccccCChHHHHHHHHHHHHhhHHHHHhHH
Q 017683 92 FRDLRSFPDIRS-TSDERDFTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIG 170 (368)
Q Consensus 92 ~~~l~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~l~~l~~~~~el~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~li~ 170 (368)
|+++..++.... .++..+|.+.+..+..++...+..|+.|+.|++..... ......++.+||+.+++++++|+|++
T Consensus 116 fe~ll~~~~~~~~~~~~~qf~d~l~~l~~rH~dvv~~lA~Gl~E~~~~~~d---p~~~~~iqyFLdr~y~sRIsiRMLv~ 192 (414)
T KOG0787|consen 116 FEDLLEFPTISPDLEDLSQFNDLLNTLRNRHNDVVPTLAQGLIEYREKDGD---PVTEKNIQYFLDRFYMSRISIRMLVN 192 (414)
T ss_pred HHHHHccCCCCcchhhHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhcCC---cchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999988877 88889999999999999999999999999999875541 01256899999999999999999999
Q ss_pred HHhhhcC--CCCCCCcccccccCCCHHHHHHHHHHHHHHHHHHhhCCCCceEEecCCCceee-ecchhHHHHHHHHHHHH
Q 017683 171 QHVELHN--PNPPPHCIGYIDTKMSPVQVARNASEHARCVCLREYGSAPDFNIYGDPSFTFP-YVPSHLHLMVFELVKNS 247 (368)
Q Consensus 171 ~ll~l~~--~~~~~~~~~~~~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~d~~~l~~vl~NLl~NA 247 (368)
+++.+.. ......++|.....|++.++|+++.+.++.+|..+|...+++.+.++....+. +.|.+|..++.+|++||
T Consensus 193 qh~~l~~~~kp~~~~~iG~I~~~c~v~~vi~~a~e~ar~lCd~yy~~sPel~i~~~~a~~~~vyvPshL~ymlfElfKNa 272 (414)
T KOG0787|consen 193 QHLLLFASGKPDHPRHIGIIDPRCSVKKVIKDASENARFLCDQYYLNSPELIIEGHNALSFTVYVPSHLYYMLFELFKNA 272 (414)
T ss_pred hhhheecCCCCCCcceeeeeCCCCCHHHHHHHHHHHHHHHHHHhccCCCeeEecCcccccCccccchHHHHHHHHHHHHH
Confidence 9999866 23344689999999999999999999999999999999999999988888877 79999999999999999
Q ss_pred HHHHHHhhcCCCCCCCCEEEEEEeCCCceEEEEeecCCCCCCCCcccccccccccCCCCCCcccccccCCCCCCccccCH
Q 017683 248 LRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAADKGTMAGYGYGL 327 (368)
Q Consensus 248 i~~~~~~~~~~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~~~~~~~~~~~g~GlGL 327 (368)
.+|+-+.|......-++|.|.+..+++.+.|.|+|.|.||+.+..+++|+..|+|.+.+.... .+.....|.|.||
T Consensus 273 mrATve~h~~~~~~~ppI~V~V~~gdeDl~ikISDrGGGV~~~~~drlf~Y~ySTa~~~~~d~----~~~~plaGfG~GL 348 (414)
T KOG0787|consen 273 MRATVEHHGDDGDELPPIKVTVAKGDEDLLIKISDRGGGVPHRDIDRLFSYMYSTAPAPSSDN----NRTAPLAGFGFGL 348 (414)
T ss_pred HHHHHHHhccCCCCCCCeEEEEecCCcceEEEEecCCCCcChhHHHHHHhhhcccCCCCCCCC----CCcCcccccccCC
Confidence 999999776665547789999999999999999999999999999999999999987633111 1245678999999
Q ss_pred HHHHHHHHHhCCeEEEEecCCCeeEEEEEEeccc
Q 017683 328 PISRLYARYFGGDLQIISMEGYGELNMFSVLLYS 361 (368)
Q Consensus 328 ~i~k~i~~~~gG~i~v~s~~g~Gt~f~i~lP~~~ 361 (368)
+|+|.+++++||++.+.|.+|.||+++|+|...+
T Consensus 349 PisrlYa~yf~Gdl~L~SleG~GTD~yI~Lk~ls 382 (414)
T KOG0787|consen 349 PISRLYARYFGGDLKLQSLEGIGTDVYIYLKALS 382 (414)
T ss_pred cHHHHHHHHhCCCeeEEeeeccccceEEEeccCC
Confidence 9999999999999999999999999999997654
No 2
>COG5002 VicK Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=100.00 E-value=4.2e-37 Score=270.51 Aligned_cols=231 Identities=19% Similarity=0.211 Sum_probs=201.3
Q ss_pred hhHHHHHHHHHHHHHhccCcHHHHHHHHHHHhhccCcccccCChHHHHHHHHHHHHhhHHHHHhHHHHhhhcCCCCCCCc
Q 017683 105 SDERDFTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIGQHVELHNPNPPPHC 184 (368)
Q Consensus 105 ~~~~~~~~~l~~~~~~~~~~l~~l~~~~~el~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~li~~ll~l~~~~~~~~~ 184 (368)
+.++...++++.++|++|+||+++.+.+..|..... .+.+-...|+.....+..+|-.|+++++.++|. ....
T Consensus 220 k~e~ErRefvanvSHElRTPltsmksyLEALe~ga~-----~d~eiAp~Fl~vt~~ETeRMiRlV~DLl~lsr~--d~~~ 292 (459)
T COG5002 220 KVERERREFVANVSHELRTPLTSMKSYLEALEEGAW-----EDKEIAPRFLRVTLNETERMIRLVNDLLQLSRM--DNAR 292 (459)
T ss_pred HHHHHHHHHHHhcchhhcCchHHHHHHHHHHhcCCc-----cChhhhhHHHHHhHHHHHHHHHHHHHHHHHccC--cchh
Confidence 344567889999999999999999999999887654 334457889998888999999999999999999 5566
Q ss_pred ccccccCCCHHHHHHHHHHHHHHHHHHhhCCCCceEEecCCCceeeecchhHHHHHHHHHHHHHHHHHHhhcCCCCCCCC
Q 017683 185 IGYIDTKMSPVQVARNASEHARCVCLREYGSAPDFNIYGDPSFTFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPP 264 (368)
Q Consensus 185 ~~~~~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~d~~~l~~vl~NLl~NAi~~~~~~~~~~~~~~~~ 264 (368)
.+++.+.+++...+..++..+.....+..... -+.-....++++..||..+.||+.|+|+||+||+|. +|.
T Consensus 293 ~qln~e~inft~fl~~ii~R~e~~~~~e~~~~-~vR~~p~~~~~veiD~DK~tQVldNii~NA~KYsP~--------Gg~ 363 (459)
T COG5002 293 YQLNKEWINFTAFLNEIINRFEMILKKETIAR-FVRDIPKQDIWVEIDPDKMTQVLDNIISNALKYSPD--------GGR 363 (459)
T ss_pred hhhhHHHHHhHHHHHHHHHHHHHHHhhHHHHH-HHhcCCCCceEEEeChhHHHHHHHHHHHHHhhcCCC--------CCe
Confidence 67788999999999999999887755441100 122234567889999999999999999999999998 899
Q ss_pred EEEEEEeCCCceEEEEeecCCCCCCCCcccccccccccCCCCCCcccccccCCCCCCccccCHHHHHHHHHHhCCeEEEE
Q 017683 265 IRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAADKGTMAGYGYGLPISRLYARYFGGDLQII 344 (368)
Q Consensus 265 I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~~~~~~~~~~~g~GlGL~i~k~i~~~~gG~i~v~ 344 (368)
|++.+...+.++.|+|+|.|.|||.+++++||++||+.+.+ +.+..+|+||||+|+|.|++.|||.||.+
T Consensus 364 Itv~~~~~~~~v~iSI~D~G~gIPk~d~~~iFdrfyRvdkA----------RsR~~gGTGLGLaIakeiV~~hgG~iWA~ 433 (459)
T COG5002 364 ITVSVKQRETWVEISISDQGLGIPKEDLEKIFDRFYRVDKA----------RSRKMGGTGLGLAIAKEIVQAHGGRIWAE 433 (459)
T ss_pred EEEEEeeeCcEEEEEEccCCCCCCchhHHHHHHHHhhhhhh----------hhhcCCCCchhHHHHHHHHHHhCCeEEEe
Confidence 99999999999999999999999999999999999999987 77889999999999999999999999999
Q ss_pred ecCCCeeEEEEEEeccc
Q 017683 345 SMEGYGELNMFSVLLYS 361 (368)
Q Consensus 345 s~~g~Gt~f~i~lP~~~ 361 (368)
|..|+||+|+++||...
T Consensus 434 s~~gkgtt~~ftLPy~~ 450 (459)
T COG5002 434 SEEGKGTTFSFTLPYSG 450 (459)
T ss_pred cccCCceEEEEEecccC
Confidence 99999999999999754
No 3
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=100.00 E-value=1.8e-34 Score=279.48 Aligned_cols=227 Identities=17% Similarity=0.207 Sum_probs=199.3
Q ss_pred hhHHHHHHHHHHHHHhccCcHHHHHHHHHHHhhccCcccccCChHHHHHHHHHHHHhhHHHHHhHHHHhhhcCCCCCCCc
Q 017683 105 SDERDFTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIGQHVELHNPNPPPHC 184 (368)
Q Consensus 105 ~~~~~~~~~l~~~~~~~~~~l~~l~~~~~el~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~li~~ll~l~~~~~~~~~ 184 (368)
+.++-.+.+++.++||+|+||+.+.+.+.-|..... ....++-.+.+..+..+..++..+|.++|+++|. +.+.
T Consensus 655 e~E~lRsaLL~sISHDLRTPLt~i~Gaa~tL~~~~~----~l~~~~~aeLl~~I~ees~~L~rlV~NLLdmTRi--~sG~ 728 (890)
T COG2205 655 ERERLRSALLASISHDLRTPLTAIMGAAETLLLDGE----ALSPEDRAELLSSIREESERLTRLVTNLLDMTRL--QSGG 728 (890)
T ss_pred HHHHHHHHHHHHhhccccCcHHHHhhhHHHhhhccc----ccCcHhHHHHHHHHHHHHHHHHHHHHHHHhHHHH--hcCC
Confidence 334445779999999999999999999988877655 2234556788888999999999999999999999 7788
Q ss_pred ccccccCCCHHHHHHHHHHHHHHHHHHhhCCCCceEEecCCC-ceeeecchhHHHHHHHHHHHHHHHHHHhhcCCCCCCC
Q 017683 185 IGYIDTKMSPVQVARNASEHARCVCLREYGSAPDFNIYGDPS-FTFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAP 263 (368)
Q Consensus 185 ~~~~~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~d~~~l~~vl~NLl~NAi~~~~~~~~~~~~~~~ 263 (368)
+.+...+..+.+++.+++..+......+ .+.++.+.+ ..+.+|+..++|||.||++||+||+++ +.
T Consensus 729 ~~l~~~~~~veEvVg~Al~r~~k~~~~~-----~i~v~~~~dl~li~~D~~LieQVLiNLleNA~Kyap~--------~s 795 (890)
T COG2205 729 VNLKLDWVLVEEVVGEALQRLRKRFTGH-----KIVVSVPVDLPLIHVDSPLIEQVLINLLENALKYAPP--------GS 795 (890)
T ss_pred cccccchhhHHHHHHHHHHHhhhhcCCc-----eEEEecCCCCceEecCHHHHHHHHHHHHHHHHhhCCC--------CC
Confidence 8888999999999999998877665544 567766666 579999999999999999999999998 68
Q ss_pred CEEEEEEeCCCceEEEEeecCCCCCCCCcccccccccccCCCCCCcccccccCCCCCCccccCHHHHHHHHHHhCCeEEE
Q 017683 264 PIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAADKGTMAGYGYGLPISRLYARYFGGDLQI 343 (368)
Q Consensus 264 ~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~~~~~~~~~~~g~GlGL~i~k~i~~~~gG~i~v 343 (368)
.|.|.+....+.+++.|.|+|+|||++.+++||++||+..+. +...|+||||+||+.|++.|||+|++
T Consensus 796 ~I~I~~~~~~~~v~~~V~DeGpGIP~~~~~~IFD~F~r~~~~------------~~~~G~GLGLsIc~~iv~ahgG~I~a 863 (890)
T COG2205 796 EIRINAGVERENVVFSVIDEGPGIPEGELERIFDKFYRGNKE------------SATRGVGLGLAICRGIVEAHGGTISA 863 (890)
T ss_pred eEEEEEEEecceEEEEEEeCCCCCChhHHHHhhhhhhcCCCC------------CCCCCccccHHHHHHHHHHcCCeEEE
Confidence 899999999999999999999999999999999999998865 22679999999999999999999999
Q ss_pred EecCCCeeEEEEEEecccc
Q 017683 344 ISMEGYGELNMFSVLLYSY 362 (368)
Q Consensus 344 ~s~~g~Gt~f~i~lP~~~~ 362 (368)
.+.+++|++|+|.||....
T Consensus 864 ~~~~~gGa~f~~~LP~~~~ 882 (890)
T COG2205 864 ENNPGGGAIFVFTLPVEED 882 (890)
T ss_pred EEcCCCceEEEEEeecCCC
Confidence 9999999999999998754
No 4
>COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms]
Probab=100.00 E-value=1.1e-33 Score=266.30 Aligned_cols=273 Identities=18% Similarity=0.184 Sum_probs=203.5
Q ss_pred HHHHHHHHhHHHHHHHHHHHhcCCccccCChhHHHHHHHHHHHHHHhhc-CCCCCCchhHHHHHHHHHHHHHhccCcHHH
Q 017683 49 SAQFLHKELPIRIARRAIELETLPYGLSEKPAVLKVRDWYLDSFRDLRS-FPDIRSTSDERDFTQMIKAIKVRHNNVVPM 127 (368)
Q Consensus 49 ~~~~~~~~l~~rv~~r~~~l~~~~~~l~~~~~i~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~ 127 (368)
..+.++++|+.||++|++++...+..+.. +|.+-.+ .-..++. ..++-+..+...+++|-..+.||+++||..
T Consensus 328 ~~~~a~~eLE~rV~eRTadL~~~n~~l~~--EIaer~~----ae~~LR~~QdeLvQA~kLA~LGQmSA~iaHElNQPLaa 401 (603)
T COG4191 328 ELQEARAELERRVEERTADLTRANARLQA--EIAEREQ----AEAALRRAQDELVQAGKLAALGQMSAGIAHELNQPLAA 401 (603)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHH--HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHH
Confidence 33568889999999999999877655544 3322111 0011111 112223444455566666666666666666
Q ss_pred HHHHHHHHhhccCcccccCChHHHHHHHHHHHHhhHHHHHhHHHHhhhcCCCCCCCcccccccCCCHHHHHHHHHHHHHH
Q 017683 128 MALGLQQLKKEMDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIGQHVELHNPNPPPHCIGYIDTKMSPVQVARNASEHARC 207 (368)
Q Consensus 128 l~~~~~el~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~li~~ll~l~~~~~~~~~~~~~~~~~~l~~li~~~~~~~~~ 207 (368)
+......-+.-+. ....+....-+..+..-..+|..|..++..|++..... ..++.+.+.|+++...+..
T Consensus 402 iRt~adna~~lLe----rgr~e~a~~Nl~~I~~LteRma~It~~Lk~FArk~~~a------~~~v~l~~ai~~Al~ll~~ 471 (603)
T COG4191 402 IRTYADNARLLLE----RGRTEEARENLERISALTERMAAITAHLKSFARKSRDA------AGPVSLREAIEGALELLRG 471 (603)
T ss_pred HHhHHHHHHHHHH----cCChHHHHhHHHHHHHHHHHHHHHHHHHHHHhccCccc------cCCccHHHHHHHHHHHHHH
Confidence 6555544333332 12233444444444444556777999999999873322 3789999999999999988
Q ss_pred HHHHhhCCCCceEEecCC-CceeeecchhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEEEEeCCCceEEEEeecCCC
Q 017683 208 VCLREYGSAPDFNIYGDP-SFTFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGG 286 (368)
Q Consensus 208 ~~~~~~~~~~~i~~~~~~-~~~~~~d~~~l~~vl~NLl~NAi~~~~~~~~~~~~~~~~I~i~~~~~~~~~~i~V~D~G~G 286 (368)
.+... ...+.++.++ ++.+.+++.+|+|||.|||.||++++.... .+.|.|.+...++.+.|+|+|||||
T Consensus 472 R~~~~---~~~l~~~~~~~~~~V~~~~iRLeQVLvNLl~NALDA~~~~~------~~~i~i~~~~~~~~v~l~VrDnGpG 542 (603)
T COG4191 472 RLRAA---GVELELDLPDAPLWVMANEIRLEQVLVNLLQNALDAMAGQE------DRRLSIRAQREGGQVVLTVRDNGPG 542 (603)
T ss_pred hhhcc---CceeeccCCCCCceeecchhhHHHHHHHHHHHHHHHhcCCC------CCeeEEEEEecCCeEEEEEccCCCC
Confidence 87765 5667766554 788999999999999999999999997632 6889999999999999999999999
Q ss_pred CCCCCcccccccccccCCCCCCcccccccCCCCCCccccCHHHHHHHHHHhCCeEEEEecCCCeeEEEEEEecc
Q 017683 287 IPRSGLPKIFTYLYSTARNPLDENTDLAADKGTMAGYGYGLPISRLYARYFGGDLQIISMEGYGELNMFSVLLY 360 (368)
Q Consensus 287 i~~~~~~~if~~f~~~~~~~~~~~~~~~~~~~~~~g~GlGL~i~k~i~~~~gG~i~v~s~~g~Gt~f~i~lP~~ 360 (368)
|+++.++++|+||||||+. .+|.||||+|+..|++.+||+|.+.+.++.|+.|+|.||..
T Consensus 543 i~~e~~~~lFePF~TtK~~--------------~~GLGLGLaIS~~i~~d~GGsL~v~n~~~~Ga~F~i~L~~a 602 (603)
T COG4191 543 IAPEALPHLFEPFFTTKPV--------------GKGLGLGLAISQNIARDLGGSLEVANHPEGGASFTIELRRA 602 (603)
T ss_pred CCHHHHHhhcCCccccCcc--------------cCCcchhHHHHHHHHHHhCCeEEeecCCCCceEEEEEeecC
Confidence 9999999999999999966 56999999999999999999999999889999999999863
No 5
>PRK09303 adaptive-response sensory kinase; Validated
Probab=100.00 E-value=3.8e-33 Score=265.27 Aligned_cols=229 Identities=17% Similarity=0.199 Sum_probs=190.8
Q ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHhhccCcccccCChHHHHHHHHHHHHhhHHHHHhHHHHhhhcCCCCCCCcccc
Q 017683 108 RDFTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIGQHVELHNPNPPPHCIGY 187 (368)
Q Consensus 108 ~~~~~~l~~~~~~~~~~l~~l~~~~~el~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~li~~ll~l~~~~~~~~~~~~ 187 (368)
+....+++.++||+++||+.+...++.+.............+..+.+++.+......+..++++++.+++. .......
T Consensus 149 ~~~~~l~~~iaHeLrtPLt~i~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~ll~~~~~--~~~~~~~ 226 (380)
T PRK09303 149 KFKDRVLAMLAHDLRTPLTAASLALETLELGQIDEDTELKPALIEQLQDQARRQLEEIERLITDLLEVGRT--RWEALRF 226 (380)
T ss_pred HHHHHHHHHHhHhhcchHHHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hcCCcee
Confidence 44677999999999999999999888877544311111223456777788778888888899999999987 4444445
Q ss_pred cccCCCHHHHHHHHHHHHHHHHHHhhCCCCceEEecCCC-ceeeecchhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEE
Q 017683 188 IDTKMSPVQVARNASEHARCVCLREYGSAPDFNIYGDPS-FTFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIR 266 (368)
Q Consensus 188 ~~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~d~~~l~~vl~NLl~NAi~~~~~~~~~~~~~~~~I~ 266 (368)
...++++.+++.+++..+...+..+ .+.+.++.+.+ +.+.+|+..|.+|+.||++||++|+++ ++.|.
T Consensus 227 ~~~~~~l~~ll~~~~~~~~~~~~~~---~i~l~~~~~~~~~~v~~d~~~l~qvl~NLl~NAik~~~~--------~~~I~ 295 (380)
T PRK09303 227 NPQKLDLGSLCQEVILELEKRWLAK---SLEIQTDIPSDLPSVYADQERIRQVLLNLLDNAIKYTPE--------GGTIT 295 (380)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHc---CCEEEEEcCCCCCeEEeCHHHHHHHHHHHHHHHHhcCCC--------CceEE
Confidence 5689999999999999999888776 66777776554 479999999999999999999999876 68899
Q ss_pred EEEEe-CCCceEEEEeecCCCCCCCCcccccccccccCCCCCCcccccccCCCCCCccccCHHHHHHHHHHhCCeEEEEe
Q 017683 267 IIVAD-GLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAADKGTMAGYGYGLPISRLYARYFGGDLQIIS 345 (368)
Q Consensus 267 i~~~~-~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~~~~~~~~~~~g~GlGL~i~k~i~~~~gG~i~v~s 345 (368)
|.+.. .++.+.|.|.|+|+|||++.++++|+|||+++.. ....|+||||+||+.+++.|||+|++.|
T Consensus 296 i~~~~~~~~~v~i~V~D~G~GI~~~~~~~iF~pf~~~~~~------------~~~~G~GLGL~i~~~iv~~~gG~i~v~s 363 (380)
T PRK09303 296 LSMLHRTTQKVQVSICDTGPGIPEEEQERIFEDRVRLPRD------------EGTEGYGIGLSVCRRIVRVHYGQIWVDS 363 (380)
T ss_pred EEEEecCCCEEEEEEEEcCCCCCHHHHHHHccCceeCCCC------------CCCCcccccHHHHHHHHHHcCCEEEEEe
Confidence 88754 5667999999999999999999999999998753 2346999999999999999999999999
Q ss_pred cCCCeeEEEEEEeccc
Q 017683 346 MEGYGELNMFSVLLYS 361 (368)
Q Consensus 346 ~~g~Gt~f~i~lP~~~ 361 (368)
.+++||+|+|+||.+.
T Consensus 364 ~~~~Gt~f~i~lP~~~ 379 (380)
T PRK09303 364 EPGQGSCFHFTLPVYR 379 (380)
T ss_pred cCCCccEEEEEEecCC
Confidence 9999999999999875
No 6
>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional
Probab=100.00 E-value=1.4e-31 Score=275.55 Aligned_cols=221 Identities=14% Similarity=0.116 Sum_probs=187.4
Q ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHhhccCcccccCChHHHHHHHHHHHHhhHHHHHhHHHHhhhcCCCCCCCcccc
Q 017683 108 RDFTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIGQHVELHNPNPPPHCIGY 187 (368)
Q Consensus 108 ~~~~~~l~~~~~~~~~~l~~l~~~~~el~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~li~~ll~l~~~~~~~~~~~~ 187 (368)
+...++++.++||+++||..+.+.++.+..... .+...++++.+..+..++..++++++++++. +.+....
T Consensus 448 ~~k~~fla~iSHELRtPL~aI~g~~elL~~~~~-------~~~~~~~l~~I~~~~~~L~~lI~dILdlsrl--e~~~~~l 518 (894)
T PRK10618 448 QARKAFLQNIGDELKQPLQSLAQLAAQLRQTSD-------EEQQQPELDQLAEQSDVLVRLVDNIQLLNML--ETQDWKP 518 (894)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHhCCCC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hcCCCcc
Confidence 445779999999999999999988877765332 3566788888888888899999999999998 5555666
Q ss_pred cccCCCHHHHHHHHHHHHHHHHHHhhCCCCceEEec--CCCceeeecchhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCE
Q 017683 188 IDTKMSPVQVARNASEHARCVCLREYGSAPDFNIYG--DPSFTFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPI 265 (368)
Q Consensus 188 ~~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~~~~--~~~~~~~~d~~~l~~vl~NLl~NAi~~~~~~~~~~~~~~~~I 265 (368)
...++++.+++++++..+...+..+ ++.+.+.. +.+..+.+|+..|.||+.||++||++|++. |.|
T Consensus 519 ~~~~~~L~~ll~~vl~~~~~~a~~k---~i~l~~~~~~~~~~~v~~D~~~L~QVL~NLL~NAik~t~~---------G~I 586 (894)
T PRK10618 519 EQELFSLQDLIDEVLPEVLPAIKRK---GLQLLIHNHLKAEQLRIGDRDALRKILLLLLNYAITTTAY---------GKI 586 (894)
T ss_pred cceeECHHHHHHHHHHHHHHHHHHC---CCEEEEEeCCCCCcEEEecHHHHHHHHHHHHHHHHHhCCC---------CeE
Confidence 6788999999999999999888876 56665543 445678999999999999999999999854 778
Q ss_pred EEEEEeC---CCceEEEEeecCCCCCCCCcccccccccccCCCCCCcccccccCCCCCCccccCHHHHHHHHHHhCCeEE
Q 017683 266 RIIVADG---LEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAADKGTMAGYGYGLPISRLYARYFGGDLQ 342 (368)
Q Consensus 266 ~i~~~~~---~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~~~~~~~~~~~g~GlGL~i~k~i~~~~gG~i~ 342 (368)
.|.+... ++.+.|+|.|+|+|||++.++++|+|||+++.. .+..+|+||||+||+++++.|||+|+
T Consensus 587 ~I~v~~~~~~~~~l~I~V~DtG~GI~~e~l~~IFePF~t~~~~-----------~~~~~GtGLGLaI~k~Lve~~GG~I~ 655 (894)
T PRK10618 587 TLEVDQDESSPDRLTIRILDTGAGVSIKELDNLHFPFLNQTQG-----------DRYGKASGLTFFLCNQLCRKLGGHLT 655 (894)
T ss_pred EEEEEEccCCCcEEEEEEEECCCCCCHHHHHHhcCccccCCCC-----------CCCCCCcChhHHHHHHHHHHcCCEEE
Confidence 8887643 357999999999999999999999999987643 23346999999999999999999999
Q ss_pred EEecCCCeeEEEEEEecc
Q 017683 343 IISMEGYGELNMFSVLLY 360 (368)
Q Consensus 343 v~s~~g~Gt~f~i~lP~~ 360 (368)
++|.+|+||+|+|.||+.
T Consensus 656 v~S~~g~GT~F~I~LPl~ 673 (894)
T PRK10618 656 IKSREGLGTRYSIHLKML 673 (894)
T ss_pred EEECCCCcEEEEEEEEcc
Confidence 999999999999999985
No 7
>PRK11006 phoR phosphate regulon sensor protein; Provisional
Probab=99.98 E-value=5.1e-31 Score=255.13 Aligned_cols=222 Identities=15% Similarity=0.141 Sum_probs=183.8
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHhhccCcccccCChHHHHHHHHHHHHhhHHHHHhHHHHhhhcCCCCCCCccccc
Q 017683 109 DFTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIGQHVELHNPNPPPHCIGYI 188 (368)
Q Consensus 109 ~~~~~l~~~~~~~~~~l~~l~~~~~el~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~li~~ll~l~~~~~~~~~~~~~ 188 (368)
...+++..++||+++||+.+.+.++.+..... ..+....+++.+..+..++..++++++++++... ......
T Consensus 203 ~~~~~~~~isHelrtPL~~i~~~~~~l~~~~~------~~~~~~~~l~~i~~~~~~l~~li~~ll~~~r~~~--~~~~~~ 274 (430)
T PRK11006 203 ARRNFFANVSHELRTPLTVLQGYLEMMQDQPL------EGALREKALHTMREQTQRMEGLVKQLLTLSKIEA--APTIDL 274 (430)
T ss_pred HHHHHHHHhHHHhcchHHHHHHHHHHHhcCCC------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCCccc
Confidence 45678999999999999999988877764332 2355667788888888889999999999998732 222333
Q ss_pred ccCCCHHHHHHHHHHHHHHHHHHhhCCCCceEEecCCCceeeecchhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEE
Q 017683 189 DTKMSPVQVARNASEHARCVCLREYGSAPDFNIYGDPSFTFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRII 268 (368)
Q Consensus 189 ~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~d~~~l~~vl~NLl~NAi~~~~~~~~~~~~~~~~I~i~ 268 (368)
...+++..+++.+...+.... . ....+.+..+.+..+.+|+..|.+++.||+.||++|+++ ++.|.|.
T Consensus 275 ~~~~~~~~~~~~l~~~~~~~~-~---~~~~i~~~~~~~~~i~~d~~~l~~vl~NLl~NAik~~~~--------~~~I~i~ 342 (430)
T PRK11006 275 NEKVDVPMMLRVLEREAQTLS-Q---GKHTITFEVDNSLKVFGNEDQLRSAISNLVYNAVNHTPE--------GTHITVR 342 (430)
T ss_pred CCccCHHHHHHHHHHHHHHHh-c---CCcEEEEecCCCceEEECHHHHHHHHHHHHHHHHhcCCC--------CCeEEEE
Confidence 467888888887766655443 2 256677777777789999999999999999999999876 5789999
Q ss_pred EEeCCCceEEEEeecCCCCCCCCcccccccccccCCCCCCcccccccCCCCCCccccCHHHHHHHHHHhCCeEEEEecCC
Q 017683 269 VADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAADKGTMAGYGYGLPISRLYARYFGGDLQIISMEG 348 (368)
Q Consensus 269 ~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~~~~~~~~~~~g~GlGL~i~k~i~~~~gG~i~v~s~~g 348 (368)
+...++.+.|+|.|+|+|||++.++++|+|||+++.. ..+..+|+||||+|||.+++.|||+|+++|.+|
T Consensus 343 ~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~----------~~~~~~G~GLGL~ivk~iv~~~gG~i~i~s~~~ 412 (430)
T PRK11006 343 WQRVPQGAEFSVEDNGPGIAPEHIPRLTERFYRVDKA----------RSRQTGGSGLGLAIVKHALSHHDSRLEIESEVG 412 (430)
T ss_pred EEEcCCEEEEEEEEcCCCCCHHHHHHhccCcccccCC----------CCCCCCCCchHHHHHHHHHHHCCCEEEEEecCC
Confidence 9888889999999999999999999999999988754 234456999999999999999999999999999
Q ss_pred CeeEEEEEEecc
Q 017683 349 YGELNMFSVLLY 360 (368)
Q Consensus 349 ~Gt~f~i~lP~~ 360 (368)
+||+|+|.||..
T Consensus 413 ~Gt~f~i~lP~~ 424 (430)
T PRK11006 413 KGTRFSFVLPER 424 (430)
T ss_pred CceEEEEEechH
Confidence 999999999975
No 8
>PRK15347 two component system sensor kinase SsrA; Provisional
Probab=99.97 E-value=7.2e-30 Score=269.33 Aligned_cols=217 Identities=17% Similarity=0.215 Sum_probs=187.6
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHhhccCcccccCChHHHHHHHHHHHHhhHHHHHhHHHHhhhcCCCCCCCcccccc
Q 017683 110 FTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIGQHVELHNPNPPPHCIGYID 189 (368)
Q Consensus 110 ~~~~l~~~~~~~~~~l~~l~~~~~el~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~li~~ll~l~~~~~~~~~~~~~~ 189 (368)
...++..+.||+++||+.+.+.++.+..... .+..+++++.+..+..++..++++++++++. +.+......
T Consensus 398 ~~~~~~~isHelrtPL~~i~~~~~~l~~~~~-------~~~~~~~~~~i~~~~~~l~~li~~ll~~~~~--~~~~~~~~~ 468 (921)
T PRK15347 398 KSEHLTTISHEIRTPLNGVLGALELLQNTPL-------TAEQMDLADTARQCTLSLLAIINNLLDFSRI--ESGQMTLSL 468 (921)
T ss_pred HHHHHHHhHHHhchhHHHHHHHHHHHhcCCC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hcCCcccee
Confidence 4568899999999999999998887764332 3456778888888888899999999999998 556666667
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHhhCCCCceEEecCC--CceeeecchhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEE
Q 017683 190 TKMSPVQVARNASEHARCVCLREYGSAPDFNIYGDP--SFTFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRI 267 (368)
Q Consensus 190 ~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~d~~~l~~vl~NLl~NAi~~~~~~~~~~~~~~~~I~i 267 (368)
+++++.+++++++..+...+..+ .+.+.+..++ +..+.+|+.+|.+|+.||++||++|++. |.|.|
T Consensus 469 ~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~d~~~l~~il~NLl~NAik~~~~---------g~I~i 536 (921)
T PRK15347 469 EETALLPLLDQAMLTIQGPAQSK---SLTLRTFVGAHVPLYLHLDSLRLRQILVNLLGNAVKFTET---------GGIRL 536 (921)
T ss_pred cccCHHHHHHHHHHHHHHHHHHC---CcEEEEEECCCCCceEEECHHHHHHHHHHHHHHHhhcCCC---------CCEEE
Confidence 89999999999999998877766 5666655443 4578899999999999999999999854 77999
Q ss_pred EEEeCCCceEEEEeecCCCCCCCCcccccccccccCCCCCCcccccccCCCCCCccccCHHHHHHHHHHhCCeEEEEecC
Q 017683 268 IVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAADKGTMAGYGYGLPISRLYARYFGGDLQIISME 347 (368)
Q Consensus 268 ~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~~~~~~~~~~~g~GlGL~i~k~i~~~~gG~i~v~s~~ 347 (368)
.+...++.+.|+|+|+|+||+++.++++|+|||+++.. .+|+||||+||+++++.|||+|+++|.+
T Consensus 537 ~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~--------------~~g~GLGL~i~~~~~~~~gG~i~i~s~~ 602 (921)
T PRK15347 537 RVKRHEQQLCFTVEDTGCGIDIQQQQQIFTPFYQADTH--------------SQGTGLGLTIASSLAKMMGGELTLFSTP 602 (921)
T ss_pred EEEEcCCEEEEEEEEcCCCCCHHHHHHHhcCcccCCCC--------------CCCCchHHHHHHHHHHHcCCEEEEEecC
Confidence 99988999999999999999999999999999987754 4699999999999999999999999999
Q ss_pred CCeeEEEEEEeccc
Q 017683 348 GYGELNMFSVLLYS 361 (368)
Q Consensus 348 g~Gt~f~i~lP~~~ 361 (368)
|+||+|+|.||...
T Consensus 603 ~~Gt~f~i~lp~~~ 616 (921)
T PRK15347 603 GVGSCFSLVLPLNE 616 (921)
T ss_pred CCceEEEEEEECCC
Confidence 99999999999853
No 9
>PRK10815 sensor protein PhoQ; Provisional
Probab=99.97 E-value=3.9e-29 Score=244.57 Aligned_cols=218 Identities=15% Similarity=0.108 Sum_probs=176.3
Q ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHhhccCcccccCChHHHHHHHHHHHHhhHHHHHhHHHHhhhcCCCCCCCcccc
Q 017683 108 RDFTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIGQHVELHNPNPPPHCIGY 187 (368)
Q Consensus 108 ~~~~~~l~~~~~~~~~~l~~l~~~~~el~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~li~~ll~l~~~~~~~~~~~~ 187 (368)
+...+++..+.||+|+||+.+.+.++.++.... ... .+....+.....++..+++.++..++. ..+....
T Consensus 264 ~~~~~~l~~isHELRTPLt~I~~~l~~L~~~~~-----~~~---~~~~~~~~~~i~ri~~~i~~ll~~~~~--~~~~~~~ 333 (485)
T PRK10815 264 TKYRTTLTDLTHSLKTPLAVLQSTLRSLRSGKQ-----MSV---EQAEPIMLEQISRISQQIGYYLHRASM--RSEHNLL 333 (485)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCC-----CCH---HHHHHHHHHHHHHHHHHHHHHHHHHHh--hcCCccc
Confidence 445668999999999999999998887765432 011 111222333444566677888877765 3333444
Q ss_pred cccCCCHHHHHHHHHHHHHHHHHHhhCCCCceEEecCCCceeeecchhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEE
Q 017683 188 IDTKMSPVQVARNASEHARCVCLREYGSAPDFNIYGDPSFTFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRI 267 (368)
Q Consensus 188 ~~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~d~~~l~~vl~NLl~NAi~~~~~~~~~~~~~~~~I~i 267 (368)
..+.+++..++++++..+...+..+ ++.+.++.+++..+.+|+..+.+++.||++||++|+. ..|.|
T Consensus 334 ~~~~~~l~~ll~~~~~~l~~~~~~~---~i~i~~~~~~~~~v~~d~~~l~~vl~NLi~NAik~~~----------~~i~I 400 (485)
T PRK10815 334 SRELHSVAPLLDNLTSALNKVYQRK---GVNITLDISPEITFVGEKNDFMEVMGNVLDNACKYCL----------EFVEI 400 (485)
T ss_pred ccceecHHHHHHHHHHHHHHHHHHC---CcEEEEecCCCcEEEeCHHHHHHHHHHHHHHHHHhcC----------CcEEE
Confidence 5578899999999999998877766 6777777777788899999999999999999999984 45888
Q ss_pred EEEeCCCceEEEEeecCCCCCCCCcccccccccccCCCCCCcccccccCCCCCCccccCHHHHHHHHHHhCCeEEEEecC
Q 017683 268 IVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAADKGTMAGYGYGLPISRLYARYFGGDLQIISME 347 (368)
Q Consensus 268 ~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~~~~~~~~~~~g~GlGL~i~k~i~~~~gG~i~v~s~~ 347 (368)
.+...++.+.|.|+|+|+|||++.++++|+|||+.+.. .+|+||||+||+++++.|||+|.+.|.+
T Consensus 401 ~~~~~~~~v~I~V~D~G~GI~~e~~~~iF~~f~~~~~~--------------~~G~GLGL~Ivk~iv~~~gG~i~v~s~~ 466 (485)
T PRK10815 401 SARQTDEHLHIVVEDDGPGIPESKRELIFDRGQRADTL--------------RPGQGLGLSVAREITEQYEGKISAGDSP 466 (485)
T ss_pred EEEEeCCEEEEEEEECCCCcCHHHHHHHhCCcccCCCC--------------CCCcchhHHHHHHHHHHcCCEEEEEECC
Confidence 88888889999999999999999999999999987654 3599999999999999999999999999
Q ss_pred CCeeEEEEEEecccc
Q 017683 348 GYGELNMFSVLLYSY 362 (368)
Q Consensus 348 g~Gt~f~i~lP~~~~ 362 (368)
++||+|+|.||....
T Consensus 467 ~~Gt~f~i~lp~~~~ 481 (485)
T PRK10815 467 LGGARMEVIFGRQHS 481 (485)
T ss_pred CCEEEEEEEEcCCCC
Confidence 999999999998754
No 10
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional
Probab=99.97 E-value=5.8e-30 Score=266.80 Aligned_cols=220 Identities=15% Similarity=0.242 Sum_probs=188.2
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHhhccCcccccCChHHHHHHHHHHHHhhHHHHHhHHHHhhhcCCCCCCCcccccc
Q 017683 110 FTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIGQHVELHNPNPPPHCIGYID 189 (368)
Q Consensus 110 ~~~~l~~~~~~~~~~l~~l~~~~~el~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~li~~ll~l~~~~~~~~~~~~~~ 189 (368)
...++..++||+|+||..+.+.++.+..... .++.+++++.+..+..++..+|++++++++. +.+...+..
T Consensus 447 k~~fla~iSHELRTPL~~I~g~lelL~~~~~-------~~~~~~~l~~i~~~~~~L~~lI~dlLd~sri--e~~~~~l~~ 517 (924)
T PRK10841 447 KSMFLATVSHELRTPLYGIIGNLDLLQTKEL-------PKGVDRLVTAMNNSSSLLLKIISDILDFSKI--ESEQLKIEP 517 (924)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHhCCCC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCCceeee
Confidence 4568999999999999999988877754322 4567788888888888999999999999998 445555666
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHhhCCCCceEEecCC--CceeeecchhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEE
Q 017683 190 TKMSPVQVARNASEHARCVCLREYGSAPDFNIYGDP--SFTFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRI 267 (368)
Q Consensus 190 ~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~d~~~l~~vl~NLl~NAi~~~~~~~~~~~~~~~~I~i 267 (368)
.++++.+++++++..+...+..+ .+.+.+..++ +..+.+|+..|.|||.||++||+||+.. |.|.|
T Consensus 518 ~~~~l~~li~~v~~~~~~~~~~k---~i~l~~~i~~~~~~~v~~D~~~L~qvl~NLl~NAik~t~~---------G~I~I 585 (924)
T PRK10841 518 REFSPREVINHITANYLPLVVKK---RLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDT---------GCIVL 585 (924)
T ss_pred EEecHHHHHHHHHHHHHHHHHHc---CcEEEEEeCCCCCcEEEECHHHHHHHHHHHHHHHHhhCCC---------CcEEE
Confidence 88999999999999998887776 5666655443 3468999999999999999999999854 77999
Q ss_pred EEEeCCCceEEEEeecCCCCCCCCcccccccccccCCCCCCcccccccCCCCCCccccCHHHHHHHHHHhCCeEEEEecC
Q 017683 268 IVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAADKGTMAGYGYGLPISRLYARYFGGDLQIISME 347 (368)
Q Consensus 268 ~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~~~~~~~~~~~g~GlGL~i~k~i~~~~gG~i~v~s~~ 347 (368)
.+...++.+.|.|.|+|+||+++.++++|+|||+.+.. .....+|+||||+||+++++.|||+|+++|.+
T Consensus 586 ~v~~~~~~l~i~V~DtG~GI~~e~~~~lFepF~~~~~~----------~~~~~~GtGLGL~I~k~lv~~~gG~I~v~S~~ 655 (924)
T PRK10841 586 HVRVDGDYLSFRVRDTGVGIPAKEVVRLFDPFFQVGTG----------VQRNFQGTGLGLAICEKLINMMDGDISVDSEP 655 (924)
T ss_pred EEEEeCCEEEEEEEEcCcCCCHHHHHHHhcccccCCCC----------CCCCCCCeehhHHHHHHHHHHCCCEEEEEEcC
Confidence 88888889999999999999999999999999987654 23345699999999999999999999999999
Q ss_pred CCeeEEEEEEecc
Q 017683 348 GYGELNMFSVLLY 360 (368)
Q Consensus 348 g~Gt~f~i~lP~~ 360 (368)
|.||+|+|.||..
T Consensus 656 g~Gt~F~i~LP~~ 668 (924)
T PRK10841 656 GMGSQFTIRIPLY 668 (924)
T ss_pred CCcEEEEEEEECC
Confidence 9999999999985
No 11
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).
Probab=99.97 E-value=1.2e-29 Score=269.08 Aligned_cols=221 Identities=13% Similarity=0.142 Sum_probs=191.2
Q ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHhhccCcccccCChHHHHHHHHHHHHhhHHHHHhHHHHhhhcCCCCCCCcccc
Q 017683 108 RDFTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIGQHVELHNPNPPPHCIGY 187 (368)
Q Consensus 108 ~~~~~~l~~~~~~~~~~l~~l~~~~~el~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~li~~ll~l~~~~~~~~~~~~ 187 (368)
.....++..+.||+|+||+.+.+.++.+..... .+..+.+++.+..+..++..++++++++++. +.+....
T Consensus 462 ~~~~~~~~~~sHelrtPL~~i~~~~~ll~~~~~-------~~~~~~~l~~i~~~~~~l~~~i~~ll~~~~~--e~~~~~~ 532 (968)
T TIGR02956 462 RAKSAFLATMSHEIRTPLNGILGTLELLGDTGL-------TSQQQQYLQVINRSGESLLDILNDILDYSKI--EAGHLSI 532 (968)
T ss_pred HHHHHHHHHhHHHhhhHHHHHHHHHHHHhCCCC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hcCCCee
Confidence 445779999999999999999998887764322 3567788999888999999999999999998 5556666
Q ss_pred cccCCCHHHHHHHHHHHHHHHHHHhhCCCCceEEecC--CCceeeecchhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCE
Q 017683 188 IDTKMSPVQVARNASEHARCVCLREYGSAPDFNIYGD--PSFTFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPI 265 (368)
Q Consensus 188 ~~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~~d~~~l~~vl~NLl~NAi~~~~~~~~~~~~~~~~I 265 (368)
...++++.+++++++..+...+..+ ++.+.+..+ .+..+.+|+.+|.+||.|||+||++|++. |.|
T Consensus 533 ~~~~~~l~~ll~~~~~~~~~~~~~~---~i~~~~~~~~~~~~~~~~d~~~l~~il~nLi~NAik~~~~---------g~i 600 (968)
T TIGR02956 533 SPRPFDLNALLDDVHHLMVSRAQLK---GIQLRLNIPEQLPNWWQGDGPRIRQVLINLVGNAIKFTDR---------GSV 600 (968)
T ss_pred eecccCHHHHHHHHHHHHHHHHHHc---CcEEEEEeCCCCCceEeeCHHHHHHHHHHHHHHHHhhCCC---------CeE
Confidence 7789999999999999999988776 666666644 34568899999999999999999999854 789
Q ss_pred EEEEEeCCCc-eEEEEeecCCCCCCCCcccccccccccCCCCCCcccccccCCCCCCccccCHHHHHHHHHHhCCeEEEE
Q 017683 266 RIIVADGLED-VTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAADKGTMAGYGYGLPISRLYARYFGGDLQII 344 (368)
Q Consensus 266 ~i~~~~~~~~-~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~~~~~~~~~~~g~GlGL~i~k~i~~~~gG~i~v~ 344 (368)
.|.+...++. +.|.|.|+|+|||++.++++|+|||+++.. +..+|+||||+||+.+++.|||+|++.
T Consensus 601 ~i~~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~------------~~~~g~GLGL~i~~~l~~~~gG~i~~~ 668 (968)
T TIGR02956 601 VLRVSLNDDSSLLFEVEDTGCGIAEEEQATLFDAFTQADGR------------RRSGGTGLGLAISQRLVEAMDGELGVE 668 (968)
T ss_pred EEEEEEcCCCeEEEEEEeCCCCCCHHHHHHHHhhhhccCCC------------CCCCCccHHHHHHHHHHHHcCCEEEEE
Confidence 9998877777 999999999999999999999999998743 334699999999999999999999999
Q ss_pred ecCCCeeEEEEEEeccc
Q 017683 345 SMEGYGELNMFSVLLYS 361 (368)
Q Consensus 345 s~~g~Gt~f~i~lP~~~ 361 (368)
|.+|+||+|+|.||+..
T Consensus 669 s~~~~Gt~f~~~lp~~~ 685 (968)
T TIGR02956 669 SELGVGSCFWFTLPLTR 685 (968)
T ss_pred ecCCCcEEEEEEEEcCC
Confidence 99999999999999864
No 12
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=99.97 E-value=8.1e-30 Score=264.14 Aligned_cols=222 Identities=17% Similarity=0.226 Sum_probs=186.5
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHhhccCcccccCChHHHHHHHHHHHHhhHHHHHhHHHHhhhcCCCCCCCcccccc
Q 017683 110 FTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIGQHVELHNPNPPPHCIGYID 189 (368)
Q Consensus 110 ~~~~l~~~~~~~~~~l~~l~~~~~el~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~li~~ll~l~~~~~~~~~~~~~~ 189 (368)
...++..++|++++|++.+.+.++.+.... ..++...+++.+..+..++..++++++++++. +.+...+..
T Consensus 283 ~~~~~a~isHelrtPL~~I~g~~~ll~~~~-------~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~--~~~~~~~~~ 353 (779)
T PRK11091 283 KTTFISTISHELRTPLNGIVGLSRILLDTE-------LTAEQRKYLKTIHVSAITLGNIFNDIIDMDKM--ERRKLQLDN 353 (779)
T ss_pred HHHHHHHhhHhhcCcHHHHHHHHHHHhcCC-------CCHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH--hCCCcEEEe
Confidence 457888999999999999988776654322 23566788888888889999999999999988 555566667
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHhhCCCCceEEecCCC--ceeeecchhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEE
Q 017683 190 TKMSPVQVARNASEHARCVCLREYGSAPDFNIYGDPS--FTFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRI 267 (368)
Q Consensus 190 ~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~d~~~l~~vl~NLl~NAi~~~~~~~~~~~~~~~~I~i 267 (368)
.++++.++++++...+...+..+ ++.+.+..+.+ ..+.+|+.+|.||+.||+.||++|++. |.|.|
T Consensus 354 ~~~~l~~~i~~~~~~~~~~~~~~---~i~~~~~~~~~~~~~v~~d~~~l~qvl~NLl~NAik~~~~---------g~v~i 421 (779)
T PRK11091 354 QPIDFTDFLADLENLSGLQAEQK---GLRFDLEPLLPLPHKVITDGTRLRQILWNLISNAVKFTQQ---------GGVTV 421 (779)
T ss_pred eccCHHHHHHHHHHHHHHHHHhc---CCEEEEEeCCCCCceEEeCHHHHHHHHHHHHHHHHHhCCC---------CcEEE
Confidence 89999999999999998887776 66666665443 358899999999999999999999843 77888
Q ss_pred EEEeC-CCceEEEEeecCCCCCCCCcccccccccccCCCCCCcccccccCCCCCCccccCHHHHHHHHHHhCCeEEEEec
Q 017683 268 IVADG-LEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAADKGTMAGYGYGLPISRLYARYFGGDLQIISM 346 (368)
Q Consensus 268 ~~~~~-~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~~~~~~~~~~~g~GlGL~i~k~i~~~~gG~i~v~s~ 346 (368)
.+... ++.+.|+|.|+|+|||++.++++|+|||+++... ......|+||||+||+.+++.|||+|+++|.
T Consensus 422 ~~~~~~~~~~~i~V~D~G~Gi~~~~~~~iF~~f~~~~~~~---------~~~~~~GtGLGL~i~~~iv~~~gG~i~v~s~ 492 (779)
T PRK11091 422 RVRYEEGDMLTFEVEDSGIGIPEDELDKIFAMYYQVKDSH---------GGKPATGTGIGLAVSKRLAQAMGGDITVTSE 492 (779)
T ss_pred EEEEccCCEEEEEEEecCCCCCHHHHHHHHHHhhcccCCC---------CCCCCCCcchHHHHHHHHHHHcCCEEEEEec
Confidence 88766 6779999999999999999999999999996320 2233579999999999999999999999999
Q ss_pred CCCeeEEEEEEeccc
Q 017683 347 EGYGELNMFSVLLYS 361 (368)
Q Consensus 347 ~g~Gt~f~i~lP~~~ 361 (368)
+|.||+|+|.||...
T Consensus 493 ~g~Gt~f~i~lP~~~ 507 (779)
T PRK11091 493 EGKGSCFTLTIHAPA 507 (779)
T ss_pred CCCeEEEEEEEeccc
Confidence 999999999999853
No 13
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=99.97 E-value=3e-29 Score=264.58 Aligned_cols=221 Identities=15% Similarity=0.156 Sum_probs=183.2
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHhhccCcccccCChHHHHHHHHHHHHhhHHHHHhHHHHhhhcCCCCCCCcccccc
Q 017683 110 FTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIGQHVELHNPNPPPHCIGYID 189 (368)
Q Consensus 110 ~~~~l~~~~~~~~~~l~~l~~~~~el~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~li~~ll~l~~~~~~~~~~~~~~ 189 (368)
..+++..++||+|+||+.+.+.+..+..... .+...++++.+..+..++..++++++++++. +.+...+..
T Consensus 293 ~~~~l~~isHelrtPL~~i~~~~~~l~~~~~-------~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~--~~~~~~~~~ 363 (919)
T PRK11107 293 KSEFLANMSHELRTPLNGVIGFTRQTLKTPL-------TPTQRDYLQTIERSANNLLAIINDILDFSKL--EAGKLVLEN 363 (919)
T ss_pred HHHHHHHhhHhhcccHHHHHHHHHHHhcCCC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hcCCcEEEE
Confidence 3579999999999999999888765543222 3466788888888899999999999999998 455566666
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHhhCCCCceEEecCCC--ceeeecchhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEE
Q 017683 190 TKMSPVQVARNASEHARCVCLREYGSAPDFNIYGDPS--FTFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRI 267 (368)
Q Consensus 190 ~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~d~~~l~~vl~NLl~NAi~~~~~~~~~~~~~~~~I~i 267 (368)
.++++.+++++++..+...+..+ ++.+.+..+.+ ..+.+|+.+|.+|+.||++||++|++. |.|.|
T Consensus 364 ~~~~l~~~l~~~~~~~~~~~~~~---~i~~~~~~~~~~~~~~~~d~~~l~~vl~NLl~NAik~~~~---------g~v~i 431 (919)
T PRK11107 364 IPFSLRETLDEVVTLLAHSAHEK---GLELTLNIDPDVPDNVIGDPLRLQQIITNLVGNAIKFTES---------GNIDI 431 (919)
T ss_pred eecCHHHHHHHHHHHHHHHHHHc---CCEEEEEeCCCCCceEEeCHHHHHHHHHHHHHHHhhcCCC---------CcEEE
Confidence 79999999999999999888776 66666665443 358899999999999999999999864 56665
Q ss_pred EEE--eCC---CceEEEEeecCCCCCCCCcccccccccccCCCCCCcccccccCCCCCCccccCHHHHHHHHHHhCCeEE
Q 017683 268 IVA--DGL---EDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAADKGTMAGYGYGLPISRLYARYFGGDLQ 342 (368)
Q Consensus 268 ~~~--~~~---~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~~~~~~~~~~~g~GlGL~i~k~i~~~~gG~i~ 342 (368)
.+. ... ..+.|.|.|+|+|||++.++++|+|||+.+.. ..+..+|+||||+||+++++.|||+|+
T Consensus 432 ~v~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~----------~~~~~~g~GLGL~i~~~i~~~~gG~i~ 501 (919)
T PRK11107 432 LVELRALSNTKVQLEVQIRDTGIGISERQQSQLFQAFRQADAS----------ISRRHGGTGLGLVITQKLVNEMGGDIS 501 (919)
T ss_pred EEEEEecCCCeeEEEEEEEEeCCCcCHHHHHHHhhhhccCCCC----------CCCCCCCcchhHHHHHHHHHHhCCEEE
Confidence 553 221 25889999999999999999999999987654 234457999999999999999999999
Q ss_pred EEecCCCeeEEEEEEeccc
Q 017683 343 IISMEGYGELNMFSVLLYS 361 (368)
Q Consensus 343 v~s~~g~Gt~f~i~lP~~~ 361 (368)
+.|.+|.||+|+|.||+..
T Consensus 502 v~s~~~~Gt~f~i~lp~~~ 520 (919)
T PRK11107 502 FHSQPNRGSTFWFHLPLDL 520 (919)
T ss_pred EEecCCCCEEEEEEEEecc
Confidence 9999999999999999853
No 14
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=99.97 E-value=2.2e-29 Score=265.40 Aligned_cols=221 Identities=17% Similarity=0.166 Sum_probs=187.5
Q ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHhhccCcccccCChHHHHHHHHHHHHhhHHHHHhHHHHhhhcCCCCCCCcccc
Q 017683 108 RDFTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIGQHVELHNPNPPPHCIGY 187 (368)
Q Consensus 108 ~~~~~~l~~~~~~~~~~l~~l~~~~~el~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~li~~ll~l~~~~~~~~~~~~ 187 (368)
+....++..+.||+++||..+.+.++.+..... .+..+.+++.+..+..++..++++++++++.........+
T Consensus 442 ~~~~~~l~~isHelrtPL~~i~~~~~ll~~~~~-------~~~~~~~l~~i~~~~~~l~~li~~ll~~s~~~~~~~~~~~ 514 (914)
T PRK11466 442 QAKSAFLAAMSHEIRTPLYGILGTAQLLADNPA-------LNAQRDDLRAITDSGESLLTILNDILDYSAIEAGGKNVSV 514 (914)
T ss_pred HHHHHHHHHhHHHHhhHHHHHHHHHHHHhCCCC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccee
Confidence 345679999999999999999888876653322 3466778888888888899999999999987443334555
Q ss_pred cccCCCHHHHHHHHHHHHHHHHHHhhCCCCceEEecCC--CceeeecchhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCE
Q 017683 188 IDTKMSPVQVARNASEHARCVCLREYGSAPDFNIYGDP--SFTFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPI 265 (368)
Q Consensus 188 ~~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~d~~~l~~vl~NLl~NAi~~~~~~~~~~~~~~~~I 265 (368)
..+++++.++++.++..+...+..+ ++.+.++.+. +..+.+|+..|.+|+.||+.||++|++. |.|
T Consensus 515 ~~~~~~l~~ll~~~~~~~~~~~~~~---~i~~~~~~~~~~~~~v~~d~~~l~qil~NLl~NAik~~~~---------g~I 582 (914)
T PRK11466 515 SDEPFEPRPLLESTLQLMSGRVKGR---PIRLATDIADDLPTALMGDPRRIRQVITNLLSNALRFTDE---------GSI 582 (914)
T ss_pred cccccCHHHHHHHHHHHHHHHHHhC---CcEEEEEeCCCCCceEEECHHHHHHHHHHHHHHHHHhCCC---------CeE
Confidence 6689999999999999999888776 5666666544 3468899999999999999999999754 789
Q ss_pred EEEEEeCCCceEEEEeecCCCCCCCCcccccccccccCCCCCCcccccccCCCCCCccccCHHHHHHHHHHhCCeEEEEe
Q 017683 266 RIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAADKGTMAGYGYGLPISRLYARYFGGDLQIIS 345 (368)
Q Consensus 266 ~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~~~~~~~~~~~g~GlGL~i~k~i~~~~gG~i~v~s 345 (368)
.|.+...++.+.|.|.|+|+|||++.++++|+|||+.+.. .+|+||||+||+++++.|||+|++.|
T Consensus 583 ~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~--------------~~g~GLGL~i~~~l~~~~gG~i~v~s 648 (914)
T PRK11466 583 VLRSRTDGEQWLVEVEDSGCGIDPAKLAEIFQPFVQVSGK--------------RGGTGLGLTISSRLAQAMGGELSATS 648 (914)
T ss_pred EEEEEEcCCEEEEEEEECCCCCCHHHHHHHhchhhcCCCC--------------CCCCcccHHHHHHHHHHcCCEEEEEe
Confidence 9999888889999999999999999999999999987544 46999999999999999999999999
Q ss_pred cCCCeeEEEEEEeccc
Q 017683 346 MEGYGELNMFSVLLYS 361 (368)
Q Consensus 346 ~~g~Gt~f~i~lP~~~ 361 (368)
.+|.||+|+|.||+..
T Consensus 649 ~~~~Gt~f~i~lP~~~ 664 (914)
T PRK11466 649 TPEVGSCFCLRLPLRV 664 (914)
T ss_pred cCCCCeEEEEEEEccc
Confidence 9999999999999853
No 15
>PRK10604 sensor protein RstB; Provisional
Probab=99.97 E-value=2.6e-28 Score=236.31 Aligned_cols=240 Identities=14% Similarity=0.098 Sum_probs=185.9
Q ss_pred CChhHHHHHHHHHHHHHHhhcCCCCCCchhHHHHHHHHHHHHHhccCcHHHHHHHHHHHhhccCcccccCChHHHHHHHH
Q 017683 77 EKPAVLKVRDWYLDSFRDLRSFPDIRSTSDERDFTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLD 156 (368)
Q Consensus 77 ~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~l~~~~~el~~~l~~~~~~~~~~~~~~~l~ 156 (368)
...++..+...++...+++.+. .+...+++..+.||+++||+.+...+..+... . .++.+.
T Consensus 187 ~~~el~~L~~~fn~m~~~l~~~--------~~~~~~l~~~vsHeLrtPL~~i~~~l~~l~~~-~-------~~~~~~--- 247 (433)
T PRK10604 187 EGSSLERLGVAFNQMADNINAL--------IASKKQLIDGIAHELRTPLVRLRYRLEMSDNL-S-------AAESQA--- 247 (433)
T ss_pred CccHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHhhHhhcChHHHHHHHHHHhcCC-C-------cHHHHH---
Confidence 4456777777777777666442 12235588999999999999998777665522 2 112211
Q ss_pred HHHHhhHHHHHhHHHHhhhcCCCCCCCcccccccCCCHHHHHHHHHHHHHHHHHHhhCCCCceEEecCCCceeeecchhH
Q 017683 157 RFYMSRIGIRMLIGQHVELHNPNPPPHCIGYIDTKMSPVQVARNASEHARCVCLREYGSAPDFNIYGDPSFTFPYVPSHL 236 (368)
Q Consensus 157 ~~~~~~~~~~~li~~ll~l~~~~~~~~~~~~~~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~d~~~l 236 (368)
+......+..++++++.+++. +........+.+++.+++++++..+......+ .+.+.+.. .+..+.+|+..+
T Consensus 248 -i~~~~~~l~~li~~ll~~~rl--~~~~~~~~~~~~~l~~~l~~~i~~~~~~~~~~---~i~~~~~~-~~~~~~~d~~~l 320 (433)
T PRK10604 248 -LNRDIGQLEALIEELLTYARL--DRPQNELHLSEPDLPAWLSTHLADIQAVTPEK---TVRLDTPH-QGDYGALDMRLM 320 (433)
T ss_pred -HHHHHHHHHHHHHHHHHHHhc--cCCCcccCCCCCCHHHHHHHHHHHHHHHhhcC---cEEEEecC-CCceEecCHHHH
Confidence 334455678899999999987 44444455678999999999998887655443 33343332 344577899999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEEEEeCCCceEEEEeecCCCCCCCCcccccccccccCCCCCCcccccccC
Q 017683 237 HLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAAD 316 (368)
Q Consensus 237 ~~vl~NLl~NAi~~~~~~~~~~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~~~~~~ 316 (368)
.+++.||++||++|+ ++.|.|++...++.+.|.|.|+|+|||++.++++|+|||+.+.. +
T Consensus 321 ~~vl~NLl~NAik~~----------~~~I~I~~~~~~~~~~I~V~D~G~Gi~~e~~~~if~~f~r~~~~----------~ 380 (433)
T PRK10604 321 ERVLDNLLNNALRYA----------HSRVRVSLLLDGNQACLIVEDDGPGIPPEERERVFEPFVRLDPS----------R 380 (433)
T ss_pred HHHHHHHHHHHHHhC----------CCeEEEEEEEECCEEEEEEEEcCCCCCHHHHhhcCCCCccCCCC----------C
Confidence 999999999999996 36899999888899999999999999999999999999997754 2
Q ss_pred CCCCCccccCHHHHHHHHHHhCCeEEEEecCCCeeEEEEEEecccc
Q 017683 317 KGTMAGYGYGLPISRLYARYFGGDLQIISMEGYGELNMFSVLLYSY 362 (368)
Q Consensus 317 ~~~~~g~GlGL~i~k~i~~~~gG~i~v~s~~g~Gt~f~i~lP~~~~ 362 (368)
.+..+|+|+||++|+++++.|||++++++.+++||+|++.+|....
T Consensus 381 ~~~~~g~GLGL~ivk~i~~~~gG~i~v~s~~~~G~~f~i~lP~~~~ 426 (433)
T PRK10604 381 DRATGGCGLGLAIVHSIALAMGGSVNCDESELGGARFSFSWPVWHN 426 (433)
T ss_pred CCCCCCccchHHHHHHHHHHCCCEEEEEecCCCeeEEEEEEeCCCC
Confidence 3345689999999999999999999999999999999999998653
No 16
>PRK10549 signal transduction histidine-protein kinase BaeS; Provisional
Probab=99.97 E-value=2.5e-28 Score=238.65 Aligned_cols=247 Identities=15% Similarity=0.126 Sum_probs=198.7
Q ss_pred CChhHHHHHHHHHHHHHHhhcCCCCCCchhHHHHHHHHHHHHHhccCcHHHHHHHHHHHhhccCcccccCChHHHHHHHH
Q 017683 77 EKPAVLKVRDWYLDSFRDLRSFPDIRSTSDERDFTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLD 156 (368)
Q Consensus 77 ~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~l~~~~~el~~~l~~~~~~~~~~~~~~~l~ 156 (368)
...++..+.+.++...+.+... .+...+++..+.|++++|+..+...++.+..... . ...+.+.
T Consensus 215 ~~dE~~~l~~~~n~m~~~l~~~--------~~~~~~~~~~~shel~~pL~~i~~~~~~l~~~~~----~----~~~~~l~ 278 (466)
T PRK10549 215 SRDELGRLAQDFNQLASTLEKN--------EQMRRDFMADISHELRTPLAVLRGELEAIQDGVR----K----FTPESVA 278 (466)
T ss_pred ChhHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHhHHhCChHHHHHHHHHHHHhccc----c----CCHHHHH
Confidence 4457777777777776666431 2234568889999999999999888877765443 1 1123344
Q ss_pred HHHHhhHHHHHhHHHHhhhcCCCCCCCcccccccCCCHHHHHHHHHHHHHHHHHHhhCCCCceEEecCCCceeeecchhH
Q 017683 157 RFYMSRIGIRMLIGQHVELHNPNPPPHCIGYIDTKMSPVQVARNASEHARCVCLREYGSAPDFNIYGDPSFTFPYVPSHL 236 (368)
Q Consensus 157 ~~~~~~~~~~~li~~ll~l~~~~~~~~~~~~~~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~d~~~l 236 (368)
.+......+..+++++..+++. ..+........+++.++++.++..++..+..+ .+.+.++.+++..+.+|+..+
T Consensus 279 ~~~~~~~~l~~li~~l~~l~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~---~i~i~~~~~~~~~~~~d~~~l 353 (466)
T PRK10549 279 SLQAEVGTLTKLVDDLHQLSLS--DEGALAYRKTPVDLVPLLEVAGGAFRERFASR---GLTLQLSLPDSATVFGDPDRL 353 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh--cCCCcccccCCCCHHHHHHHHHHHHHHHHHHC---CcEEEEecCCCcEEEeCHHHH
Confidence 4444555677788888888765 44445556688999999999999988877665 677787777778888999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEEEEeCCCceEEEEeecCCCCCCCCcccccccccccCCCCCCcccccccC
Q 017683 237 HLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAAD 316 (368)
Q Consensus 237 ~~vl~NLl~NAi~~~~~~~~~~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~~~~~~ 316 (368)
.|++.||+.||++|+++ ++.|.|.+...++.+.|.|.|+|+|||++.++++|++||+++.. +
T Consensus 354 ~qvl~nll~NAi~~~~~--------~~~I~i~~~~~~~~~~i~V~D~G~Gi~~e~~~~lf~~~~~~~~~----------~ 415 (466)
T PRK10549 354 MQLFNNLLENSLRYTDS--------GGSLHISAEQRDKTLRLTFADSAPGVSDEQLQKLFERFYRTEGS----------R 415 (466)
T ss_pred HHHHHHHHHHHHHhCCC--------CCEEEEEEEEcCCEEEEEEEecCCCcCHHHHHHhccCcccCCCC----------c
Confidence 99999999999999866 68999999999999999999999999999999999999998754 2
Q ss_pred CCCCCccccCHHHHHHHHHHhCCeEEEEecCCCeeEEEEEEecccc
Q 017683 317 KGTMAGYGYGLPISRLYARYFGGDLQIISMEGYGELNMFSVLLYSY 362 (368)
Q Consensus 317 ~~~~~g~GlGL~i~k~i~~~~gG~i~v~s~~g~Gt~f~i~lP~~~~ 362 (368)
....+|+|+||++|+++++.|||++.++|.+++||+|+|.||+...
T Consensus 416 ~~~~~g~GlGL~iv~~i~~~~~G~l~~~s~~~~G~~~~i~lP~~~~ 461 (466)
T PRK10549 416 NRASGGSGLGLAICLNIVEAHNGRIIAAHSPFGGVSITVELPLERD 461 (466)
T ss_pred CCCCCCCcHHHHHHHHHHHHcCCEEEEEECCCCeEEEEEEccCCCC
Confidence 3345699999999999999999999999999999999999998653
No 17
>TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL. NifL is a modulator of the nitrogen fixation positive regulator protein NifA, and is therefore a negative regulator. It binds NifA. NifA and NifL are encoded by adjacent genes.
Probab=99.97 E-value=8e-29 Score=243.11 Aligned_cols=220 Identities=15% Similarity=0.127 Sum_probs=164.0
Q ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHhhccCcccccCChHHHHHHHHHHHHhhHHHHHhHHHHhhhcCCCCCCCcccc
Q 017683 108 RDFTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIGQHVELHNPNPPPHCIGY 187 (368)
Q Consensus 108 ~~~~~~l~~~~~~~~~~l~~l~~~~~el~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~li~~ll~l~~~~~~~~~~~~ 187 (368)
+.+.+++....|++++||..+.+.+..+..... ..........+...... +..++..+..+..... ..
T Consensus 274 ~~l~~~~~~~~h~lr~pL~~i~~~~~~l~~~~~----~~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~-----~~ 341 (494)
T TIGR02938 274 EAIRETLSAAIHRLQGPMNLISAAISVLQRRGD----DAGNPASAAMLQQALSA---GREHMEALRQVIPQSP-----QE 341 (494)
T ss_pred HHHHHHHHHHHHHHhcHHHHHHHHHHHHHhccc----cccCHHHHHHHHHHHHH---HHHHHHHHHHhhccCc-----cc
Confidence 344556677779999999999888877665422 01112333333332222 2223344443332110 11
Q ss_pred cccCCCHHHHHHHHHHHHHHHHHHhhCCCCceEEecCCC-ceeeecchhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEE
Q 017683 188 IDTKMSPVQVARNASEHARCVCLREYGSAPDFNIYGDPS-FTFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIR 266 (368)
Q Consensus 188 ~~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~d~~~l~~vl~NLl~NAi~~~~~~~~~~~~~~~~I~ 266 (368)
...++|+..++++++..+...+..+ ++.+.+..+.. ..+.+|+..|++||.||+.||+||+++... ..+.|.
T Consensus 342 ~~~~~dl~~~~~~~~~~~~~~~~~~---~i~~~~~~~~~~~~v~~d~~~l~~vl~Nl~~NAik~~~~~~~----~~~~i~ 414 (494)
T TIGR02938 342 IVVPVNLNQILRDVITLSTPRLLAA---GIVVDWQPAATLPAILGRELQLRSLFKALVDNAIEAMNIKGW----KRRELS 414 (494)
T ss_pred ccccccHHHHHHHHHHHhHHHHHhC---CCEEEEecCCCCCeeecCHHHHHHHHHHHHHHHHHHhhccCC----CcceEE
Confidence 2368999999999999888776665 66777766544 368899999999999999999999977310 014588
Q ss_pred EEEEeCCCceEEEEeecCCCCCCCCcccccccccccCCCCCCcccccccCCCCCCccccCHHHHHHHHHHhCCeEEEEec
Q 017683 267 IIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAADKGTMAGYGYGLPISRLYARYFGGDLQIISM 346 (368)
Q Consensus 267 i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~~~~~~~~~~~g~GlGL~i~k~i~~~~gG~i~v~s~ 346 (368)
|.+...++.+.|+|+|||+|||++.++++|+|||+++.. . .+|+||||+||+.+++.|||+|+++|.
T Consensus 415 i~~~~~~~~~~~~V~D~G~Gi~~~~~~~iF~~f~~~~~~------------~-~~G~GlGL~i~~~iv~~~gG~i~~~s~ 481 (494)
T TIGR02938 415 ITTALNGDLIVVSILDSGPGIPQDLRYKVFEPFFTTKGG------------S-RKHIGMGLSVAQEIVADHGGIIDLDDD 481 (494)
T ss_pred EEEEecCCEEEEEEEeCCCCCCHHHHHHhcCCCcccCCC------------C-CCCCcccHHHHHHHHHHcCCEEEEEEC
Confidence 888888999999999999999999999999999998854 1 469999999999999999999999999
Q ss_pred CCCeeEEEEEEec
Q 017683 347 EGYGELNMFSVLL 359 (368)
Q Consensus 347 ~g~Gt~f~i~lP~ 359 (368)
+|+||+|+|+||+
T Consensus 482 ~~~G~~f~i~lp~ 494 (494)
T TIGR02938 482 YSEGCRIIVEFRV 494 (494)
T ss_pred CCCCEEEEEEecC
Confidence 9999999999995
No 18
>COG3852 NtrB Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms]
Probab=99.97 E-value=4.5e-29 Score=216.91 Aligned_cols=215 Identities=16% Similarity=0.184 Sum_probs=174.8
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHhhccCcccccCChHHHHHHHHHHHHhhHHHHHhHHHHhhhcCCCCCCCccccc
Q 017683 109 DFTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIGQHVELHNPNPPPHCIGYI 188 (368)
Q Consensus 109 ~~~~~l~~~~~~~~~~l~~l~~~~~el~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~li~~ll~l~~~~~~~~~~~~~ 188 (368)
....+++.++||++|||+.|.+..+.|...+. .+..+.+..-+..+..+++.|++.+.-++...+. .
T Consensus 131 a~~~L~r~LAHEIKNPL~GiRGAAQLLe~~lp-------d~~~~~lt~lIieE~DRl~~LVDRme~~~~~rp~------~ 197 (363)
T COG3852 131 AVKGLVRGLAHEIKNPLGGIRGAAQLLERALP-------DEALRELTQLIIEEADRLRNLVDRLEVLGPQRPG------D 197 (363)
T ss_pred HHHHHHHHHHHHhcCcccchhhHHHHHHhhCC-------ChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc------c
Confidence 44668899999999999999999999998887 3447888888899999999999999777654221 1
Q ss_pred ccCCCHHHHHHHHHHHHHHHHHHhhCCCCceEEecCCCc-eeeecchhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEE
Q 017683 189 DTKMSPVQVARNASEHARCVCLREYGSAPDFNIYGDPSF-TFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRI 267 (368)
Q Consensus 189 ~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~d~~~l~~vl~NLl~NAi~~~~~~~~~~~~~~~~I~i 267 (368)
..+++++.+++.+...+...+ +.++.+.-+.++.+ .+.+|+++|.|++.||++||+++...+. ..+|.|.+
T Consensus 198 r~~~NIH~VLerV~~lv~~e~----~~~i~l~rdYDPSLP~v~~d~DqliQv~LNlVrNAaqA~~~~~----~~~g~I~L 269 (363)
T COG3852 198 RVPVNIHEVLERVRALVEAEF----ADNVRLIRDYDPSLPEVLGDRDQLIQVFLNLVRNAAQALGGRA----DEGGEIIL 269 (363)
T ss_pred cccchHHHHHHHHHHHHhccc----CCceEEeecCCCCCccccCCHHHHHHHHHHHHHHHHHHhcCCC----CCCceEEE
Confidence 257899888877777665543 33556666666654 6999999999999999999999986411 11478887
Q ss_pred EEEeC----------CCceEEEEeecCCCCCCCCcccccccccccCCCCCCcccccccCCCCCCccccCHHHHHHHHHHh
Q 017683 268 IVADG----------LEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAADKGTMAGYGYGLPISRLYARYF 337 (368)
Q Consensus 268 ~~~~~----------~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~~~~~~~~~~~g~GlGL~i~k~i~~~~ 337 (368)
++... .-.+.+.|.|||+|+|++..+++|.||.+++.. |+||||+++++++..|
T Consensus 270 rTR~~~q~~i~g~r~rl~l~leViDNGPGVP~~L~~~lF~P~Vs~r~~----------------GsGLGLala~~li~qH 333 (363)
T COG3852 270 RTRTGIQLTIAGTRYRLALPLEVIDNGPGVPPDLQDHLFYPMVSGREG----------------GTGLGLALAQNLIDQH 333 (363)
T ss_pred EeccceEEEccCceeEeeeeeEEecCCCCCChHHhhhccccccccCCC----------------CccccHHHHHHHHHhc
Confidence 76321 113567899999999999999999999999977 9999999999999999
Q ss_pred CCeEEEEecCCCeeEEEEEEeccc
Q 017683 338 GGDLQIISMEGYGELNMFSVLLYS 361 (368)
Q Consensus 338 gG~i~v~s~~g~Gt~f~i~lP~~~ 361 (368)
||.|+++|.+| .|+|+|.+|..+
T Consensus 334 ~G~Ie~~S~Pg-~T~FrvllP~~~ 356 (363)
T COG3852 334 GGKIEFDSWPG-RTVFRVLLPIRK 356 (363)
T ss_pred CCEEEEeccCC-ceEEEEEeeccc
Confidence 99999999998 799999999865
No 19
>PRK10490 sensor protein KdpD; Provisional
Probab=99.97 E-value=6.2e-29 Score=258.09 Aligned_cols=220 Identities=13% Similarity=0.130 Sum_probs=180.5
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHhhccCcccccCChHHHHHHHHHHHHhhHHHHHhHHHHhhhcCCCCCCCcccccc
Q 017683 110 FTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIGQHVELHNPNPPPHCIGYID 189 (368)
Q Consensus 110 ~~~~l~~~~~~~~~~l~~l~~~~~el~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~li~~ll~l~~~~~~~~~~~~~~ 189 (368)
..++++.+.||+++||+.+.+.+..+...+. .........++.+.....++..++++++++++. +.+......
T Consensus 664 r~~lla~isHELrtPLt~I~g~~~lL~~~l~-----~~~~~~~~~~~~i~~~~~~l~~li~~LL~~srl--~~~~~~l~~ 736 (895)
T PRK10490 664 RNALLAALSHDLRTPLTVLFGQAEILTLDLA-----SEGSPHARQASEIRQQVLNTTRLVNNLLDMARI--QSGGFNLRK 736 (895)
T ss_pred HHHHHHHhHHHHhHHHHHHHHHHHHHhhccc-----ccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hcCCCcccc
Confidence 4678999999999999999887766654433 111223344556666666777899999999987 555566667
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHhhCCCCceEEecCCCc-eeeecchhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEE
Q 017683 190 TKMSPVQVARNASEHARCVCLREYGSAPDFNIYGDPSF-TFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRII 268 (368)
Q Consensus 190 ~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~d~~~l~~vl~NLl~NAi~~~~~~~~~~~~~~~~I~i~ 268 (368)
.++++.+++++++..+...+..+ .+.+..+.+. .+.+|+..|.+|+.||++||++|+++ ++.|.|.
T Consensus 737 ~~~~L~eli~~~l~~l~~~~~~~-----~i~l~~~~~~~~v~~D~~~L~qVL~NLL~NAik~s~~--------g~~I~I~ 803 (895)
T PRK10490 737 EWLTLEEVVGSALQMLEPGLSGH-----PINLSLPEPLTLIHVDGPLFERVLINLLENAVKYAGA--------QAEIGID 803 (895)
T ss_pred cccCHHHHHHHHHHHHHHHhcCC-----CEEEEcCCCCeEEEECHHHHHHHHHHHHHHHHHhCCC--------CCeEEEE
Confidence 89999999999999887665443 4555544444 78999999999999999999999876 5789999
Q ss_pred EEeCCCceEEEEeecCCCCCCCCcccccccccccCCCCCCcccccccCCCCCCccccCHHHHHHHHHHhCCeEEEEecCC
Q 017683 269 VADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAADKGTMAGYGYGLPISRLYARYFGGDLQIISMEG 348 (368)
Q Consensus 269 ~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~~~~~~~~~~~g~GlGL~i~k~i~~~~gG~i~v~s~~g 348 (368)
+...++.+.|.|.|+|+|||++.++++|++||+++.. ....|+||||+|||.+++.|||+|+++|.++
T Consensus 804 ~~~~~~~v~I~V~D~G~GI~~e~~~~IFepF~~~~~~------------~~~~G~GLGL~Ivk~ive~hGG~I~v~s~~~ 871 (895)
T PRK10490 804 AHVEGERLQLDVWDNGPGIPPGQEQLIFDKFARGNKE------------SAIPGVGLGLAICRAIVEVHGGTIWAENRPE 871 (895)
T ss_pred EEEeCCEEEEEEEECCCCCCHHHHHHhcCCCccCCCC------------CCCCCccHHHHHHHHHHHHcCCEEEEEECCC
Confidence 9988899999999999999999999999999987653 2346999999999999999999999999999
Q ss_pred CeeEEEEEEeccc
Q 017683 349 YGELNMFSVLLYS 361 (368)
Q Consensus 349 ~Gt~f~i~lP~~~ 361 (368)
+||+|+|.||+..
T Consensus 872 ~Gt~f~i~LPl~~ 884 (895)
T PRK10490 872 GGACFRVTLPLET 884 (895)
T ss_pred CeEEEEEEeECCC
Confidence 9999999999864
No 20
>PRK10364 sensor protein ZraS; Provisional
Probab=99.97 E-value=1.1e-28 Score=240.63 Aligned_cols=215 Identities=17% Similarity=0.213 Sum_probs=181.1
Q ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHhhccCcccccCChHHHHHHHHHHHHhhHHHHHhHHHHhhhcCCCCCCCcccc
Q 017683 108 RDFTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIGQHVELHNPNPPPHCIGY 187 (368)
Q Consensus 108 ~~~~~~l~~~~~~~~~~l~~l~~~~~el~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~li~~ll~l~~~~~~~~~~~~ 187 (368)
....++...+.|++++||..+.+.++.+..... ..+..++.++.+.....++..++++++.+++.. . .
T Consensus 235 ~~~~~~~~~laHelrtpL~~i~~~~~~l~~~~~------~~~~~~~~~~~i~~~~~~l~~~i~~ll~~~~~~--~----~ 302 (457)
T PRK10364 235 VALGHLAAGVAHEIRNPLSSIKGLAKYFAERAP------AGGEAHQLAQVMAKEADRLNRVVSELLELVKPT--H----L 302 (457)
T ss_pred HHHHHHHHHhhHHhccHHHHHHHHHHHHHhhcc------CchHHHHHHHHHHHHHHHHHHHHHHHHHHhCcC--C----C
Confidence 345668888999999999999988877765443 223455666777777778888999999998752 2 2
Q ss_pred cccCCCHHHHHHHHHHHHHHHHHHhhCCCCceEEecCC-CceeeecchhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEE
Q 017683 188 IDTKMSPVQVARNASEHARCVCLREYGSAPDFNIYGDP-SFTFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIR 266 (368)
Q Consensus 188 ~~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~d~~~l~~vl~NLl~NAi~~~~~~~~~~~~~~~~I~ 266 (368)
...++++.++++.++..+...+..+ .+.+.++.+. ...+.+|+..+.+++.||++||++|+.+ ++.|.
T Consensus 303 ~~~~~~l~~~l~~~~~~~~~~~~~~---~i~l~~~~~~~~~~~~~d~~~l~~il~NLl~NA~k~~~~--------~~~I~ 371 (457)
T PRK10364 303 ALQAVDLNDLINHSLQLVSQDANSR---EIQLRFTANDTLPEIQADPDRLTQVLLNLYLNAIQAIGQ--------HGVIS 371 (457)
T ss_pred cceEecHHHHHHHHHHHHHHHHHhc---CeEEEEEcCCCCceEEECHHHHHHHHHHHHHHHHHhcCC--------CCeEE
Confidence 2368899999999999988877776 6677777555 3467899999999999999999999865 58899
Q ss_pred EEEEeCCCceEEEEeecCCCCCCCCcccccccccccCCCCCCcccccccCCCCCCccccCHHHHHHHHHHhCCeEEEEec
Q 017683 267 IIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAADKGTMAGYGYGLPISRLYARYFGGDLQIISM 346 (368)
Q Consensus 267 i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~~~~~~~~~~~g~GlGL~i~k~i~~~~gG~i~v~s~ 346 (368)
|.+...++.+.|.|.|+|+|||++.++++|++||+++.. |+|+||++|+++++.|||+++++|.
T Consensus 372 i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~~~~~k~~----------------g~GlGL~iv~~~v~~~gG~i~i~s~ 435 (457)
T PRK10364 372 VTASESGAGVKISVTDSGKGIAADQLEAIFTPYFTTKAE----------------GTGLGLAVVHNIVEQHGGTIQVASQ 435 (457)
T ss_pred EEEEEeCCeEEEEEEECCCCCCHHHHHHHhCccccCCCC----------------CCcccHHHHHHHHHHCCCEEEEEeC
Confidence 999988889999999999999999999999999988755 9999999999999999999999999
Q ss_pred CCCeeEEEEEEeccc
Q 017683 347 EGYGELNMFSVLLYS 361 (368)
Q Consensus 347 ~g~Gt~f~i~lP~~~ 361 (368)
+++||+|+|.||...
T Consensus 436 ~~~Gt~f~i~lP~~~ 450 (457)
T PRK10364 436 EGKGATFTLWLPVNI 450 (457)
T ss_pred CCCcEEEEEEecCCC
Confidence 999999999999853
No 21
>PRK10755 sensor protein BasS/PmrB; Provisional
Probab=99.96 E-value=1.5e-27 Score=225.21 Aligned_cols=236 Identities=14% Similarity=0.110 Sum_probs=180.3
Q ss_pred hhHHHHHHHHHHHHHHhhcCCCCCCchhHHHHHHHHHHHHHhccCcHHHHHHHHHHHhhccCcccccCChHHHHHHHHHH
Q 017683 79 PAVLKVRDWYLDSFRDLRSFPDIRSTSDERDFTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDRF 158 (368)
Q Consensus 79 ~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~l~~~~~el~~~l~~~~~~~~~~~~~~~l~~~ 158 (368)
+++..+.+.++...+++... .++...++..+.|++++|++.+...+..+..... .......+
T Consensus 114 ~E~~~l~~~~n~~~~~l~~~--------~~~~~~~~~~~sHelrtPL~~i~~~~e~l~~~~~--------~~~~~~~~-- 175 (356)
T PRK10755 114 LEIEAVTSALNQLVSRLTST--------LDQERLFTADVAHELRTPLAGIRLHLELLEKQHH--------IDVAPLIA-- 175 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHhhHhhcChHHHHHHHHHHHHhccc--------hhHHHHHH--
Confidence 46666666666666655442 1122358889999999999999887766543322 12222222
Q ss_pred HHhhHHHHHhHHHHhhhcCCCCCCCcccccccCCCH-HHHHHHHHHHHHHHHHHhhCCCCceEEe-cCCCceeeecchhH
Q 017683 159 YMSRIGIRMLIGQHVELHNPNPPPHCIGYIDTKMSP-VQVARNASEHARCVCLREYGSAPDFNIY-GDPSFTFPYVPSHL 236 (368)
Q Consensus 159 ~~~~~~~~~li~~ll~l~~~~~~~~~~~~~~~~~~l-~~li~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~~d~~~l 236 (368)
...++..++++++.+++.. ..........+++ .+++..++..+...+..+ .+.+.+. .+.++.+.+|+..+
T Consensus 176 --~~~~l~~~i~~ll~~~r~~--~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~---~~~~~~~~~~~~~~v~~d~~~l 248 (356)
T PRK10755 176 --RLDQMMHTVEQLLQLARAG--QSFSSGHYQTVKLLEDVILPSQDELSEMLEQR---QQTLLLPESAADITVQGDATLL 248 (356)
T ss_pred --HHHHHHHHHHHHHHHHHcc--cccccccchhhhHHHHHHHHHHHHHHHHHHHh---CCeEEeccCCCceEEEECHHHH
Confidence 2234555788888888762 2222223356777 888888888888777766 5666663 44567899999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEEEEeCCCceEEEEeecCCCCCCCCcccccccccccCCCCCCcccccccC
Q 017683 237 HLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAAD 316 (368)
Q Consensus 237 ~~vl~NLl~NAi~~~~~~~~~~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~~~~~~ 316 (368)
.+++.||++||++|+++ ++.|.|.+...++.+.|.|.|+|+||+++.++++|++||+.+..
T Consensus 249 ~~il~nLi~NA~k~~~~--------~~~I~I~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~----------- 309 (356)
T PRK10755 249 RLLLRNLVENAHRYSPE--------GSTITIKLSQEDGGAVLAVEDEGPGIDESKCGELSKAFVRMDSR----------- 309 (356)
T ss_pred HHHHHHHHHHHHhhCCC--------CCcEEEEEEEcCCEEEEEEEECCCCCCHHHHHHhCCCeEeCCCC-----------
Confidence 99999999999999865 57899999888999999999999999999999999999986543
Q ss_pred CCCCCccccCHHHHHHHHHHhCCeEEEEecCC-CeeEEEEEEeccc
Q 017683 317 KGTMAGYGYGLPISRLYARYFGGDLQIISMEG-YGELNMFSVLLYS 361 (368)
Q Consensus 317 ~~~~~g~GlGL~i~k~i~~~~gG~i~v~s~~g-~Gt~f~i~lP~~~ 361 (368)
.+|+|+||++|+++++.|||.++++|.++ +||+|++.||...
T Consensus 310 ---~~g~GlGL~i~~~i~~~~gg~i~i~s~~~~~Gt~~~i~~p~~~ 352 (356)
T PRK10755 310 ---YGGIGLGLSIVSRITQLHHGQFFLQNRQERSGTRAWVWLPKAQ 352 (356)
T ss_pred ---CCCcCHHHHHHHHHHHHCCCEEEEEECCCCCeEEEEEEecCCC
Confidence 45999999999999999999999999987 9999999999754
No 22
>PRK13837 two-component VirA-like sensor kinase; Provisional
Probab=99.96 E-value=1.9e-28 Score=254.64 Aligned_cols=217 Identities=17% Similarity=0.224 Sum_probs=181.2
Q ss_pred hhHHHHHHHHHHHHHhccCcHHHHHHHHHHHhhccCcccccCChHHHHHHHHHHHHhhHHHHHhHHHHhhhcCCCCCCCc
Q 017683 105 SDERDFTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIGQHVELHNPNPPPHC 184 (368)
Q Consensus 105 ~~~~~~~~~l~~~~~~~~~~l~~l~~~~~el~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~li~~ll~l~~~~~~~~~ 184 (368)
++.+.++.++..++||+++||+.+.+..+.+..... ..+...++++.+..+..++..++++++++++... .
T Consensus 445 ~rl~~l~~~~~~iaHeLrtPL~~I~~~~~~l~~~~~------~~~~~~~~l~~i~~~~~rl~~li~~ll~~sr~~~--~- 515 (828)
T PRK13837 445 RRLEAVGTLASGIAHNFNNILGAILGYAEMALNKLA------RHSRAARYIDEIISAGARARLIIDQILAFGRKGE--R- 515 (828)
T ss_pred HHHHHHHHHHHHhhHHhhhHHHHHHHHHHHHHhhcc------CChHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC--C-
Confidence 334556789999999999999999888876655443 2346778888888888999999999999998632 2
Q ss_pred ccccccCCCHHHHHHHHHHHHHHHHHHhhCCCCceEEecC-CCceeeecchhHHHHHHHHHHHHHHHHHHhhcCCCCCCC
Q 017683 185 IGYIDTKMSPVQVARNASEHARCVCLREYGSAPDFNIYGD-PSFTFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAP 263 (368)
Q Consensus 185 ~~~~~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~d~~~l~~vl~NLl~NAi~~~~~~~~~~~~~~~ 263 (368)
...++++.+++++++..+..... ..+.+.+..+ ....+.+|+..|.+|+.||++||++|+++ ++
T Consensus 516 ---~~~~~~l~~ll~~~~~~~~~~~~----~~i~l~~~~~~~~~~v~~d~~~L~qvl~NLl~NAik~~~~--------~g 580 (828)
T PRK13837 516 ---NTKPFDLSELVTEIAPLLRVSLP----PGVELDFDQDQEPAVVEGNPAELQQVLMNLCSNAAQAMDG--------AG 580 (828)
T ss_pred ---CCcEEcHHHHHHHHHHHHHHHcc----CCcEEEEEeCCCCceEEECHHHHHHHHHHHHHHHHHHccc--------CC
Confidence 23689999999999987764332 2456666544 34578999999999999999999999876 68
Q ss_pred CEEEEEEeC---------------CCceEEEEeecCCCCCCCCcccccccccccCCCCCCcccccccCCCCCCccccCHH
Q 017683 264 PIRIIVADG---------------LEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAADKGTMAGYGYGLP 328 (368)
Q Consensus 264 ~I~i~~~~~---------------~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~~~~~~~~~~~g~GlGL~ 328 (368)
.|.|.+... ++.+.|.|.|+|+|||++.++++|+|||+++.. |+|+||+
T Consensus 581 ~I~I~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~GI~~e~~~~iFe~F~~~~~~----------------G~GLGL~ 644 (828)
T PRK13837 581 RVDISLSRAKLRAPKVLSHGVLPPGRYVLLRVSDTGAGIDEAVLPHIFEPFFTTRAG----------------GTGLGLA 644 (828)
T ss_pred eEEEEEEEeecccccccccccCCCCCEEEEEEEECCCCCCHHHHHHhhCCcccCCCC----------------CCcchHH
Confidence 898888655 678999999999999999999999999988754 9999999
Q ss_pred HHHHHHHHhCCeEEEEecCCCeeEEEEEEeccc
Q 017683 329 ISRLYARYFGGDLQIISMEGYGELNMFSVLLYS 361 (368)
Q Consensus 329 i~k~i~~~~gG~i~v~s~~g~Gt~f~i~lP~~~ 361 (368)
+|+.+++.|||+|++.|.+|+||+|+|+||...
T Consensus 645 i~~~iv~~~gG~i~v~s~~g~Gt~f~i~LP~~~ 677 (828)
T PRK13837 645 TVHGIVSAHAGYIDVQSTVGRGTRFDVYLPPSS 677 (828)
T ss_pred HHHHHHHHCCCEEEEEecCCCeEEEEEEEeCCC
Confidence 999999999999999999999999999999854
No 23
>TIGR03785 marine_sort_HK proteobacterial dedicated sortase system histidine kinase. This histidine kinase protein is paired with an adjacent response regulator (TIGR03787) gene. It co-occurs with a variant sortase enzyme (TIGR03784), usually in the same gene neighborhood, in proteobacterial species most of which are marine, and with an LPXTG motif-containing sortase target conserved protein (TIGR03788). Sortases and LPXTG proteins are far more common in Gram-positive bacteria, where sortase systems mediate attachment to the cell wall or cross-linking of pilin structures. We give this predicted sensor histidine kinase the gene symbol psdS, for Proteobacterial Dedicated Sortase system Sensor histidine kinase.
Probab=99.96 E-value=6e-28 Score=245.28 Aligned_cols=243 Identities=16% Similarity=0.180 Sum_probs=194.5
Q ss_pred CChhHHHHHHHHHHHHHHhhcCCCCCCchhHHHHHHHHHHHHHhccCcHHHHHHHHHHHhhccCcccccCChHHHHHHHH
Q 017683 77 EKPAVLKVRDWYLDSFRDLRSFPDIRSTSDERDFTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLD 156 (368)
Q Consensus 77 ~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~l~~~~~el~~~l~~~~~~~~~~~~~~~l~ 156 (368)
...++..+.+.+....+++.+. .+....+...+.|++++|+..+...++.+..... .+....+++
T Consensus 460 ~~DEIg~La~afn~M~~~L~~~--------~~~l~~~s~~lSHELrtPL~~I~~~le~L~~~~~-------~~~~~~~le 524 (703)
T TIGR03785 460 SRDEIGDLSRSFAQMVARLRQY--------THYLENMSSRLSHELRTPVAVVRSSLENLELQAL-------EQEKQKYLE 524 (703)
T ss_pred ChHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCC-------CHHHHHHHH
Confidence 3457777877777777665442 2334568888999999999999998877754332 345566788
Q ss_pred HHHHhhHHHHHhHHHHhhhcCCCCCCCcccccccCCCHHHHHHHHHHHHHHHHHHhhCCCCceEEecCCCceeeecchhH
Q 017683 157 RFYMSRIGIRMLIGQHVELHNPNPPPHCIGYIDTKMSPVQVARNASEHARCVCLREYGSAPDFNIYGDPSFTFPYVPSHL 236 (368)
Q Consensus 157 ~~~~~~~~~~~li~~ll~l~~~~~~~~~~~~~~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~d~~~l 236 (368)
.+.....++..+++++..+++. +........+.+++.++++.++..+...+..+ .+.+.+.. .+..+.+|+..|
T Consensus 525 ~i~~~i~~L~~li~~l~~~arl--e~~~~~~~~~~~dl~~ll~~~i~~~~~~~~~~---~i~l~i~~-~~~~i~~d~~~L 598 (703)
T TIGR03785 525 RAREGTERLSMILNNMSEATRL--EQAIQSAEVEDFDLSEVLSGCMQGYQMTYPPQ---RFELNIPE-TPLVMRGSPELI 598 (703)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh--hcccccccceeecHHHHHHHHHHHHHHHhhcC---CEEEEecC-CCeEEEECHHHH
Confidence 8777788888899999988876 33333344578999999999999888776654 44444432 345789999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEEEEeCCCceEEEEeecCCCCCCCCcccccccccccCCCCCCcccccccC
Q 017683 237 HLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAAD 316 (368)
Q Consensus 237 ~~vl~NLl~NAi~~~~~~~~~~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~~~~~~ 316 (368)
.+++.|||+||++|+++ ++.|.|.+...++.+.|+|.|+|+||+++.++++|++||+++.. .
T Consensus 599 ~~il~NLI~NAik~s~~--------~~~I~I~~~~~~~~v~I~V~D~G~GI~~e~~~~IFe~F~t~~~~----------~ 660 (703)
T TIGR03785 599 AQMLDKLVDNAREFSPE--------DGLIEVGLSQNKSHALLTVSNEGPPLPEDMGEQLFDSMVSVRDQ----------G 660 (703)
T ss_pred HHHHHHHHHHHHHHCCC--------CCeEEEEEEEcCCEEEEEEEEcCCCCCHHHHHHHhCCCeecCCC----------C
Confidence 99999999999999876 57899999989999999999999999999999999999988754 2
Q ss_pred CCCCCccccCHHHHHHHHHHhCCeEEEEecCC-CeeEEEEEEe
Q 017683 317 KGTMAGYGYGLPISRLYARYFGGDLQIISMEG-YGELNMFSVL 358 (368)
Q Consensus 317 ~~~~~g~GlGL~i~k~i~~~~gG~i~v~s~~g-~Gt~f~i~lP 358 (368)
....+|+||||+|||.+++.|||+|.+.+.++ .|++|+|+||
T Consensus 661 ~~~~~g~GLGL~Ivr~Iv~~~gG~I~v~s~~~g~Gt~f~I~LP 703 (703)
T TIGR03785 661 AQDQPHLGLGLYIVRLIADFHQGRIQAENRQQNDGVVFRISLP 703 (703)
T ss_pred CCCCCCccHHHHHHHHHHHHcCCEEEEEECCCCCeEEEEEEeC
Confidence 23345899999999999999999999999865 7999999998
No 24
>TIGR01386 cztS_silS_copS heavy metal sensor kinase. Members of this family contain a sensor histidine kinase domain (Pfam:PF00512) and a domain found in bacterial signal proteins (Pfam:PF00672). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc.
Probab=99.96 E-value=2.9e-27 Score=230.30 Aligned_cols=240 Identities=13% Similarity=0.151 Sum_probs=191.6
Q ss_pred hhHHHHHHHHHHHHHHhhcCCCCCCchhHHHHHHHHHHHHHhccCcHHHHHHHHHHHhhccCcccccCChHHHHHHHHHH
Q 017683 79 PAVLKVRDWYLDSFRDLRSFPDIRSTSDERDFTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDRF 158 (368)
Q Consensus 79 ~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~l~~~~~el~~~l~~~~~~~~~~~~~~~l~~~ 158 (368)
.++..+...+....+.+... .....++.+.+.|++++|++.+......+.... ...+...++++..
T Consensus 218 dEi~~l~~~~n~m~~~l~~~--------~~~~~~~~~~~~h~l~tpl~~~~~~~~~~~~~~------~~~~~~~~~~~~~ 283 (457)
T TIGR01386 218 AELRELAQSFNAMLGRLEDA--------FQRLSQFSADLAHELRTPLTNLLGQTQVALSQP------RTGEEYREVLESN 283 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHhhhhhhcCcHHHHHHHHHHHHcCC------CCHHHHHHHHHHH
Confidence 57777777777776665432 233456888899999999999877775543221 1345566677776
Q ss_pred HHhhHHHHHhHHHHhhhcCCCCCCCcccccccCCCHHHHHHHHHHHHHHHHHHhhCCCCceEEecCCCceeeecchhHHH
Q 017683 159 YMSRIGIRMLIGQHVELHNPNPPPHCIGYIDTKMSPVQVARNASEHARCVCLREYGSAPDFNIYGDPSFTFPYVPSHLHL 238 (368)
Q Consensus 159 ~~~~~~~~~li~~ll~l~~~~~~~~~~~~~~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~d~~~l~~ 238 (368)
.....++..++++++.+++. +........+++++.++++.++..+......+ .+.+.+ +.+..+.+|+..|.+
T Consensus 284 ~~~~~~l~~~i~~ll~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~i~~~~--~~~~~~~~~~~~l~~ 356 (457)
T TIGR01386 284 LEELERLSRMVSDMLFLARA--DNGQLALERVRLDLAAELAKVAEYFEPLAEER---GVRIRV--EGEGLVRGDPQMFRR 356 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHh--hcccccccccccCHHHHHHHHHHHHHHHHHhC---CeEEEe--cCCceEEECHHHHHH
Confidence 66667778899999999887 33333444578999999999999987766555 444444 344778999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCCCEEEEEEeCCCceEEEEeecCCCCCCCCcccccccccccCCCCCCcccccccCCC
Q 017683 239 MVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAADKG 318 (368)
Q Consensus 239 vl~NLl~NAi~~~~~~~~~~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~~~~~~~~ 318 (368)
++.|++.||++|+++ ++.|.|.+...++.+.|+|.|+|+|||++.++++|++||+++.. +..
T Consensus 357 ~~~nll~Nai~~~~~--------~~~I~i~~~~~~~~~~i~v~D~G~g~~~~~~~~~~~~~~~~~~~----------~~~ 418 (457)
T TIGR01386 357 AISNLLSNALRHTPD--------GGTITVRIERRSDEVRVSVSNPGPGIPPEHLSRLFDRFYRVDPA----------RSN 418 (457)
T ss_pred HHHHHHHHHHHcCCC--------CceEEEEEEecCCEEEEEEEeCCCCCCHHHHHHhccccccCCcc----------cCC
Confidence 999999999999865 57899999999999999999999999999999999999998765 334
Q ss_pred CCCccccCHHHHHHHHHHhCCeEEEEecCCCeeEEEEEEe
Q 017683 319 TMAGYGYGLPISRLYARYFGGDLQIISMEGYGELNMFSVL 358 (368)
Q Consensus 319 ~~~g~GlGL~i~k~i~~~~gG~i~v~s~~g~Gt~f~i~lP 358 (368)
..+|+||||++|+++++.|||++.+.+ +++||+|++.||
T Consensus 419 ~~~g~GlGL~i~~~~~~~~~G~~~~~~-~~~G~~~~~~~P 457 (457)
T TIGR01386 419 SGEGTGLGLAIVRSIMEAHGGRASAES-PDGKTRFILRFP 457 (457)
T ss_pred CCCCccccHHHHHHHHHHCCCEEEEEe-CCCceEEEEecC
Confidence 467999999999999999999999999 899999999998
No 25
>COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms]
Probab=99.96 E-value=1.4e-27 Score=224.52 Aligned_cols=228 Identities=17% Similarity=0.195 Sum_probs=191.6
Q ss_pred CchhHHHHHHHHHHHHHhccCcHHHHHHHHHHHhhccCcccccCChHHHHHHHHHHHHhhHHHHHhHHHHhhhcCCCCCC
Q 017683 103 STSDERDFTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIGQHVELHNPNPPP 182 (368)
Q Consensus 103 ~~~~~~~~~~~l~~~~~~~~~~l~~l~~~~~el~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~li~~ll~l~~~~~~~ 182 (368)
..|+..++.+..+.++||++|||+-|..+.+.++..+.++. .++.+..++..+.+.+....+..|++++..++|.++..
T Consensus 479 ~AQRs~AW~dVArRIAHEIKNPLTPIQLSAERl~rk~gk~i-~eDrevfd~~tdTIirQV~dI~rMVdeF~afARmP~p~ 557 (712)
T COG5000 479 IAQRSAAWGDVARRIAHEIKNPLTPIQLSAERLLRKLGKEI-DEDREVFDRCTDTIIRQVEDIKRMVDEFRAFARMPAPK 557 (712)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCchhhhhHHHHHHHhcccc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 35667889999999999999999999999988888877433 33677888999999999999999999999999985432
Q ss_pred CcccccccCCCHHHHHHHHHHHHHHHHHHhhCCCCceEEec-CCCceeeecchhHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 017683 183 HCIGYIDTKMSPVQVARNASEHARCVCLREYGSAPDFNIYG-DPSFTFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKV 261 (368)
Q Consensus 183 ~~~~~~~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~~d~~~l~~vl~NLl~NAi~~~~~~~~~~~~~ 261 (368)
+++.||.+++++++..++.. +.++.+..+. .+++...+|+..|.|+|.||++||.++........ ..
T Consensus 558 ------~e~~dL~~ll~e~~~L~e~~-----~~~i~f~~e~g~epl~~~~D~~~l~Qvf~NliKNA~EAi~~~~~~e-~~ 625 (712)
T COG5000 558 ------LEKSDLRALLKEVSFLYEIG-----NDHIVFAAEFGGEPLIGMADATLLGQVFGNLLKNAAEAIEAVEAEE-RR 625 (712)
T ss_pred ------CCcchHHHHHHHHHHHHhcc-----CCCeEEEeecCCCceeeecCHHHHHHHHHHHHHhHHHHhhhccccc-CC
Confidence 48999999999998876542 1345555553 34577888999999999999999999987632111 11
Q ss_pred CCCEEEEEEeCCCceEEEEeecCCCCCCCCcccccccccccCCCCCCcccccccCCCCCCccccCHHHHHHHHHHhCCeE
Q 017683 262 APPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAADKGTMAGYGYGLPISRLYARYFGGDL 341 (368)
Q Consensus 262 ~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~~~~~~~~~~~g~GlGL~i~k~i~~~~gG~i 341 (368)
.+.|+++..+.++.+++.|.|||.|+|.+.+.++|+||.|+++. ||||||+|||+|++-|||.|
T Consensus 626 ~~~i~~~~~~~~g~i~v~V~DNGkG~p~e~r~r~~EPYvTtr~K----------------GTGLGLAiVKkIvEeHGG~l 689 (712)
T COG5000 626 TALIRVSLDDADGRIVVDVIDNGKGFPRENRHRALEPYVTTREK----------------GTGLGLAIVKKIVEEHGGRL 689 (712)
T ss_pred cceEEEEEecCCCeEEEEEecCCCCCChHHhhhhccCceecccc----------------cccccHHHHHHHHHhcCCeE
Confidence 34588888899999999999999999999999999999999977 99999999999999999999
Q ss_pred EEEec-CCCeeEEEEEEec
Q 017683 342 QIISM-EGYGELNMFSVLL 359 (368)
Q Consensus 342 ~v~s~-~g~Gt~f~i~lP~ 359 (368)
.+.+. +-.|+++.|.||.
T Consensus 690 eL~da~d~~GA~i~i~fp~ 708 (712)
T COG5000 690 ELHNAPDFDGAMIRIKFPL 708 (712)
T ss_pred EecCCCCCCCcEEEEEccc
Confidence 99987 4459999999997
No 26
>COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms]
Probab=99.96 E-value=8e-28 Score=226.59 Aligned_cols=222 Identities=15% Similarity=0.139 Sum_probs=185.0
Q ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHhhccCcccccCChHHHHHHHHHHHHhhHHHHHhHHHHhhhcCCCCCCCcccc
Q 017683 108 RDFTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIGQHVELHNPNPPPHCIGY 187 (368)
Q Consensus 108 ~~~~~~l~~~~~~~~~~l~~l~~~~~el~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~li~~ll~l~~~~~~~~~~~~ 187 (368)
..+..+...+.|++++|+..+++.++.+..... ....++..+++..+......+..||++++.+++.......
T Consensus 522 ~el~~f~yv~sHdlqePl~~I~~~a~lL~~~~~----~~~d~~~~~~i~~~~~~~~~~~~lidd~l~~s~l~~~~~~--- 594 (750)
T COG4251 522 AELRAFAYVASHDLQEPLRQISNYAQLLSERYS----DALDEEAKEFITFISRLTSLMQQLIDDLLTYSKLGLTEAP--- 594 (750)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHhhhhccc----cccChHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCC---
Confidence 335667788899999999999999988877643 2345677778887777777888899999999988433222
Q ss_pred cccCCCHHHHHHHHHHHHHHHHHHhhCCCCceEEecCCCceeeecchhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEE
Q 017683 188 IDTKMSPVQVARNASEHARCVCLREYGSAPDFNIYGDPSFTFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRI 267 (368)
Q Consensus 188 ~~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~d~~~l~~vl~NLl~NAi~~~~~~~~~~~~~~~~I~i 267 (368)
..+.|+.+++++++......+... .+++.+ .+-+.+.+|+.++.|++.|||.||+||..+. .+.|.|
T Consensus 595 -l~~td~~~vv~~vl~~l~~ri~dt---gaei~i--~~lp~v~~d~~~l~qv~~NLi~Naik~~~~e-------~~~i~I 661 (750)
T COG4251 595 -LQPTDVQKVVDKVLLELSQRIADT---GAEIRI--APLPVVAADATQLGQVFQNLIANAIKFGGPE-------NPDIEI 661 (750)
T ss_pred -CCCcchHHHHHHHHHhcccccccc---cceEEe--cccceeecCHHHHHHHHHHHHhhheecCCCC-------CCceEE
Confidence 257889999988888877665544 444444 4567899999999999999999999998762 378999
Q ss_pred EEEeCCCceEEEEeecCCCCCCCCcccccccccccCCCCCCcccccccCCCCCCccccCHHHHHHHHHHhCCeEEEEecC
Q 017683 268 IVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAADKGTMAGYGYGLPISRLYARYFGGDLQIISME 347 (368)
Q Consensus 268 ~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~~~~~~~~~~~g~GlGL~i~k~i~~~~gG~i~v~s~~ 347 (368)
++...+..+++.|.|||.||+++..++||..|.+.+.. ....|+|+||+|||.|++.|+|.|+++|.+
T Consensus 662 ~~~r~ed~~t~sV~dng~Gi~~a~~~riF~iFqRl~s~------------~~y~gtG~GL~I~kkI~e~H~G~i~vEs~~ 729 (750)
T COG4251 662 SAERQEDEWTFSVRDNGIGIDPAYFERIFVIFQRLHSR------------DEYLGTGLGLAICKKIAERHQGRIWVESTP 729 (750)
T ss_pred eeeccCCceEEEecCCCCCcCHHHHHHHHHHHHhcCch------------hhhcCCCccHHHHHHHHHHhCceEEEeecC
Confidence 99999999999999999999999999999999988754 456799999999999999999999999999
Q ss_pred CCeeEEEEEEeccc
Q 017683 348 GYGELNMFSVLLYS 361 (368)
Q Consensus 348 g~Gt~f~i~lP~~~ 361 (368)
|.|.||++++|...
T Consensus 730 gEgsTF~f~lp~~~ 743 (750)
T COG4251 730 GEGSTFYFTLPVGG 743 (750)
T ss_pred CCceeEEEEeecCC
Confidence 99999999999753
No 27
>PRK09835 sensor kinase CusS; Provisional
Probab=99.96 E-value=7.2e-27 Score=229.30 Aligned_cols=243 Identities=12% Similarity=0.111 Sum_probs=191.7
Q ss_pred hhHHHHHHHHHHHHHHhhcCCCCCCchhHHHHHHHHHHHHHhccCcHHHHHHHHHHHhhccCcccccCChHHHHHHHHHH
Q 017683 79 PAVLKVRDWYLDSFRDLRSFPDIRSTSDERDFTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDRF 158 (368)
Q Consensus 79 ~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~l~~~~~el~~~l~~~~~~~~~~~~~~~l~~~ 158 (368)
.++..+...++...+++... .+...+++..+.|++++|++.+....+.+..... ........+...
T Consensus 239 dEl~~l~~~~n~m~~~l~~~--------~~~~~~~~~~laheL~tpl~~i~~~~~~~~~~~~------~~~~~~~~l~~~ 304 (482)
T PRK09835 239 IELEQLVLSFNHMIERIEDV--------FTRQSNFSADIAHEIRTPITNLITQTEIALSQSR------SQKELEDVLYSN 304 (482)
T ss_pred hHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhCCC------CHHHHHHHHHHH
Confidence 48888888888888776542 1223458899999999999998877755433211 234555666666
Q ss_pred HHhhHHHHHhHHHHhhhcCCCCCCCcccccccCCCHHHHHHHHHHHHHHHHHHhhCCCCceEEecCCCceeeecchhHHH
Q 017683 159 YMSRIGIRMLIGQHVELHNPNPPPHCIGYIDTKMSPVQVARNASEHARCVCLREYGSAPDFNIYGDPSFTFPYVPSHLHL 238 (368)
Q Consensus 159 ~~~~~~~~~li~~ll~l~~~~~~~~~~~~~~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~d~~~l~~ 238 (368)
..+..++..++++++.+++. ..........++++.++++.++..+......+ .+.+.+.. ....+.+|+..+.+
T Consensus 305 ~~~~~~~~~~i~~ll~~~~~--~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~---~~~~~~~~-~~~~v~~d~~~l~~ 378 (482)
T PRK09835 305 LEELTRMAKMVSDMLFLAQA--DNNQLIPEKKMLDLADEVGKVFDFFEAWAEER---GVELRFVG-DPCQVAGDPLMLRR 378 (482)
T ss_pred HHHHHHHHHHHHHHHHHHHh--cCCCCCCCceeecHHHHHHHHHHHHHHHHhhC---CEEEEEeC-CCcEEEECHHHHHH
Confidence 66666777789999999876 33333344578999999999999888766554 55555543 34678899999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCCCEEEEEEeCCCceEEEEeecCCCCCCCCcccccccccccCCCCCCcccccccCCC
Q 017683 239 MVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAADKG 318 (368)
Q Consensus 239 vl~NLl~NAi~~~~~~~~~~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~~~~~~~~ 318 (368)
++.||+.||++|+.+ ++.|.|.+...++.+.|.|.|+|+|||++.++++|+|||+.+.. +..
T Consensus 379 vl~nll~Na~~~~~~--------~~~I~i~~~~~~~~~~i~v~d~G~gi~~~~~~~if~~f~~~~~~----------~~~ 440 (482)
T PRK09835 379 AISNLLSNALRYTPA--------GEAITVRCQEVDHQVQLVVENPGTPIAPEHLPRLFDRFYRVDPS----------RQR 440 (482)
T ss_pred HHHHHHHHHHhcCCC--------CCeEEEEEEEeCCEEEEEEEECCCCcCHHHHHHHhCCcccCCCC----------CCC
Confidence 999999999999865 56799999888889999999999999999999999999998754 233
Q ss_pred CCCccccCHHHHHHHHHHhCCeEEEEecCCCeeEEEEEEecc
Q 017683 319 TMAGYGYGLPISRLYARYFGGDLQIISMEGYGELNMFSVLLY 360 (368)
Q Consensus 319 ~~~g~GlGL~i~k~i~~~~gG~i~v~s~~g~Gt~f~i~lP~~ 360 (368)
...|+||||++|+++++.|||+++++|.+ +||+|+|.||..
T Consensus 441 ~~~g~GlGL~i~~~i~~~~~g~i~~~s~~-~g~~~~i~lP~~ 481 (482)
T PRK09835 441 KGEGSGIGLAIVKSIVVAHKGTVAVTSDA-RGTRFVISLPRL 481 (482)
T ss_pred CCCCcchHHHHHHHHHHHCCCEEEEEECC-CcEEEEEEeeCC
Confidence 45699999999999999999999999974 699999999964
No 28
>PRK11100 sensory histidine kinase CreC; Provisional
Probab=99.96 E-value=1.1e-26 Score=227.27 Aligned_cols=243 Identities=17% Similarity=0.199 Sum_probs=198.6
Q ss_pred CChhHHHHHHHHHHHHHHhhcCCCCCCchhHHHHHHHHHHHHHhccCcHHHHHHHHHHHhhccCcccccCChHHHHHHHH
Q 017683 77 EKPAVLKVRDWYLDSFRDLRSFPDIRSTSDERDFTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLD 156 (368)
Q Consensus 77 ~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~l~~~~~el~~~l~~~~~~~~~~~~~~~l~ 156 (368)
...++..+...+....+.+.. .....++++.+.|++++|+..+...++.+..... .+...++++
T Consensus 232 ~~dEi~~l~~~~~~m~~~l~~---------~~~~~~~~~~~~h~l~~pl~~i~~~~~~l~~~~~-------~~~~~~~~~ 295 (475)
T PRK11100 232 GSSELRELAQALESMRVKLEG---------KAYVEQYVQTLTHELKSPLAAIRGAAELLQEDPP-------PEDRARFTG 295 (475)
T ss_pred chHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHhhhhhcCcHHHHHHHHHHHhccCC-------hHHHHHHHH
Confidence 345666666666665555432 2334568889999999999999998887776433 567778888
Q ss_pred HHHHhhHHHHHhHHHHhhhcCCCCCCCcccccccCCCHHHHHHHHHHHHHHHHHHhhCCCCceEEecCCCceeeecchhH
Q 017683 157 RFYMSRIGIRMLIGQHVELHNPNPPPHCIGYIDTKMSPVQVARNASEHARCVCLREYGSAPDFNIYGDPSFTFPYVPSHL 236 (368)
Q Consensus 157 ~~~~~~~~~~~li~~ll~l~~~~~~~~~~~~~~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~d~~~l 236 (368)
.+......+..++++++.+++... .........+++.++++.+...+...+... .+.+.+..+ +..+.+|...+
T Consensus 296 ~~~~~~~~~~~~i~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~i~~~~~~~-~~~~~~~~~~l 369 (475)
T PRK11100 296 NILTQSARLQQLIDRLLELARLEQ--RQELEVLEPVALAALLEELVEAREAQAAAK---GITLRLRPD-DARVLGDPFLL 369 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccc--CCCCccceeccHHHHHHHHHHHHHHHHHhC---CceEEEeCC-CceEEECHHHH
Confidence 888888889999999999988632 233334578999999999999988776665 667777655 67888999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEEEEeCCCceEEEEeecCCCCCCCCcccccccccccCCCCCCcccccccC
Q 017683 237 HLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAAD 316 (368)
Q Consensus 237 ~~vl~NLl~NAi~~~~~~~~~~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~~~~~~ 316 (368)
.+++.||+.||++|+.+ ++.|.|++...++.+.|+|+|+|+|||++.++++|++||+.+..
T Consensus 370 ~~vl~nli~Na~~~~~~--------~~~i~i~~~~~~~~~~i~i~D~G~Gi~~~~~~~i~~~~~~~~~~----------- 430 (475)
T PRK11100 370 RQALGNLLDNAIDFSPE--------GGTITLSAEVDGEQVALSVEDQGPGIPDYALPRIFERFYSLPRP----------- 430 (475)
T ss_pred HHHHHHHHHHHHHhCCC--------CCEEEEEEEEcCCEEEEEEEECCCCCCHHHHHHHHHHHccCCCC-----------
Confidence 99999999999999755 57899999999999999999999999999999999999987542
Q ss_pred CCCCCccccCHHHHHHHHHHhCCeEEEEecCCCeeEEEEEEecc
Q 017683 317 KGTMAGYGYGLPISRLYARYFGGDLQIISMEGYGELNMFSVLLY 360 (368)
Q Consensus 317 ~~~~~g~GlGL~i~k~i~~~~gG~i~v~s~~g~Gt~f~i~lP~~ 360 (368)
....+|+|+||++|+.+++.|||++.++|.+++||+|+|.||..
T Consensus 431 ~~~~~~~GlGL~i~~~~~~~~~G~i~i~s~~~~Gt~v~i~lp~~ 474 (475)
T PRK11100 431 ANGRKSTGLGLAFVREVARLHGGEVTLRNRPEGGVLATLTLPRH 474 (475)
T ss_pred CCCCCCcchhHHHHHHHHHHCCCEEEEEEcCCCeEEEEEEeeCC
Confidence 22346999999999999999999999999999999999999974
No 29
>TIGR02916 PEP_his_kin putative PEP-CTERM system histidine kinase. Members of this protein family have a novel N-terminal domain, a single predicted membrane-spanning helix, and a predicted cystosolic histidine kinase domain. We designate this protein PrsK, and its companion DNA-binding response regulator protein (TIGR02915) PrsR. These predicted signal-transducing proteins appear to enable enhancer-dependent transcriptional activation. The prsK gene is often associated with exopolysaccharide biosynthesis genes.
Probab=99.95 E-value=3.4e-27 Score=240.44 Aligned_cols=210 Identities=19% Similarity=0.230 Sum_probs=169.6
Q ss_pred chhHHHHHHHHHHHHHhccCcHHHHHHHHHHHhhccCcccccCChHHHHHHHHHHHHhhHHHHHhHHHHhhhcCCCCCCC
Q 017683 104 TSDERDFTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIGQHVELHNPNPPPH 183 (368)
Q Consensus 104 ~~~~~~~~~~l~~~~~~~~~~l~~l~~~~~el~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~li~~ll~l~~~~~~~~ 183 (368)
.++.+.++++...+.||+++|+..+...++....... ..+..++.++.+..+..+++.+++++.....
T Consensus 469 ~~~~~~~~~~~a~i~HdLrn~l~~l~~~l~~~~~~~~------~~~~~~~~l~~i~~~~~rl~~ll~~l~~~~~------ 536 (679)
T TIGR02916 469 ARQFEAFNRMSAFVVHDLKNLVAQLSLLLRNAERHKD------NPEFQDDMLETVENAVNRMKKLLAQLRSKGL------ 536 (679)
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhccc------CHHHHHHHHHHHHHHHHHHHHHHHHHHhccc------
Confidence 3344566788899999999999998877766554332 2344556667666677777778877754432
Q ss_pred cccccccCCCHHHHHHHHHHHHHHHHHHhhCCCCceEEecCCCceeeecchhHHHHHHHHHHHHHHHHHHhhcCCCCCCC
Q 017683 184 CIGYIDTKMSPVQVARNASEHARCVCLREYGSAPDFNIYGDPSFTFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAP 263 (368)
Q Consensus 184 ~~~~~~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~d~~~l~~vl~NLl~NAi~~~~~~~~~~~~~~~ 263 (368)
......+++.++++++.+..... ...+.+..+.+..+.+|+..+.+++.||++||++|+++ ++
T Consensus 537 --~~~~~~~~l~~ll~~~~~~~~~~-------~~~~~l~~~~~~~v~~d~~~l~~vl~nLl~NAik~~~~--------~~ 599 (679)
T TIGR02916 537 --EEEKLCVDLVDLLRRAIASKRAQ-------GPRPEVSIDTDLSVRADRERLERVLGHLVQNALEATPG--------EG 599 (679)
T ss_pred --ccCCccccHHHHHHHHHHHhhhh-------cCCceEEeCCCceEEECHHHHHHHHHHHHHHHHHhCCC--------CC
Confidence 12236789999999888765432 23444444566889999999999999999999999876 58
Q ss_pred CEEEEEEeCCCceEEEEeecCCCCCCCC-cccccccccccCCCCCCcccccccCCCCCCccccCHHHHHHHHHHhCCeEE
Q 017683 264 PIRIIVADGLEDVTIKVSDEGGGIPRSG-LPKIFTYLYSTARNPLDENTDLAADKGTMAGYGYGLPISRLYARYFGGDLQ 342 (368)
Q Consensus 264 ~I~i~~~~~~~~~~i~V~D~G~Gi~~~~-~~~if~~f~~~~~~~~~~~~~~~~~~~~~~g~GlGL~i~k~i~~~~gG~i~ 342 (368)
.|.|.+...++.+.|+|+|+|+|||++. .+++|+||++++.. |+|+||++||++++.|||+|+
T Consensus 600 ~I~I~~~~~~~~~~i~V~D~G~Gi~~~~i~~~lF~pf~~~~~~----------------G~GLGL~i~~~iv~~~gG~i~ 663 (679)
T TIGR02916 600 RVAIRVERECGAARIEIEDSGCGMSPAFIRERLFKPFDTTKGA----------------GMGIGVYECRQYVEEIGGRIE 663 (679)
T ss_pred cEEEEEEEcCCEEEEEEEEcCCCcChHHHHHhcCCCCCCCCCC----------------CcchhHHHHHHHHHHcCCEEE
Confidence 8999999888999999999999999998 99999999998755 999999999999999999999
Q ss_pred EEecCCCeeEEEEEEe
Q 017683 343 IISMEGYGELNMFSVL 358 (368)
Q Consensus 343 v~s~~g~Gt~f~i~lP 358 (368)
++|.+|+||+|+++||
T Consensus 664 v~s~~g~Gt~f~i~LP 679 (679)
T TIGR02916 664 VESTPGQGTIFTLVLP 679 (679)
T ss_pred EEecCCCceEEEEEeC
Confidence 9999999999999998
No 30
>TIGR02966 phoR_proteo phosphate regulon sensor kinase PhoR. Members of this protein family are the regulatory histidine kinase PhoR associated with the phosphate ABC transporter in most Proteobacteria. Related proteins from Gram-positive organisms are not included in this model. The phoR gene usually is adjacent to the response regulator phoB gene (TIGR02154).
Probab=99.95 E-value=5.9e-27 Score=218.22 Aligned_cols=219 Identities=17% Similarity=0.189 Sum_probs=183.8
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHhhccCcccccCChHHHHHHHHHHHHhhHHHHHhHHHHhhhcCCCCCCCccccccc
Q 017683 111 TQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIGQHVELHNPNPPPHCIGYIDT 190 (368)
Q Consensus 111 ~~~l~~~~~~~~~~l~~l~~~~~el~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~li~~ll~l~~~~~~~~~~~~~~~ 190 (368)
.+++..+.|++++|+..+.+.+..+..... ...+....+++.+.....++..++++++.+++. +.........
T Consensus 115 ~~~~~~l~h~l~~pL~~i~~~~~~l~~~~~-----~~~~~~~~~~~~i~~~~~~l~~~i~~l~~~~~~--~~~~~~~~~~ 187 (333)
T TIGR02966 115 RDFVANVSHELRTPLTVLRGYLETLADGPD-----EDPEEWNRALEIMLEQSQRMQSLVEDLLTLSRL--ESAASPLEDE 187 (333)
T ss_pred HHHHHhhhhhhcccHHHHHHHHHHHHhccc-----CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hcCCcccccc
Confidence 458889999999999999888876654321 234566777888888888888999999999876 3333344557
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhhCCCCceEEecCCCceeeecchhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEEEE
Q 017683 191 KMSPVQVARNASEHARCVCLREYGSAPDFNIYGDPSFTFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVA 270 (368)
Q Consensus 191 ~~~l~~li~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~d~~~l~~vl~NLl~NAi~~~~~~~~~~~~~~~~I~i~~~ 270 (368)
++++.+++..++..+...+..+ ++.+.+..+.+..+.+|+..|.+++.||+.||++|++. ++.|.|.+.
T Consensus 188 ~~~l~~~i~~~~~~~~~~~~~~---~i~i~~~~~~~~~~~~d~~~l~~vl~nll~Nai~~~~~--------~~~i~i~~~ 256 (333)
T TIGR02966 188 PVDMPALLDHLRDEAEALSQGK---NHQITFEIDGGVDVLGDEDELRSAFSNLVSNAIKYTPE--------GGTITVRWR 256 (333)
T ss_pred ccCHHHHHHHHHHHHHHHHHHc---CcEEEEcCCCCceEEECHHHHHHHHHHHHHHhheeCCC--------CCeEEEEEE
Confidence 8999999999999999887775 66777776667889999999999999999999999765 578999998
Q ss_pred eCCCceEEEEeecCCCCCCCCcccccccccccCCCCCCcccccccCCCCCCccccCHHHHHHHHHHhCCeEEEEecCCCe
Q 017683 271 DGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAADKGTMAGYGYGLPISRLYARYFGGDLQIISMEGYG 350 (368)
Q Consensus 271 ~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~~~~~~~~~~~g~GlGL~i~k~i~~~~gG~i~v~s~~g~G 350 (368)
..++.+.+.|.|+|+|||++.++++|++||+.+.. ......|+|+||++|+.+++.|||++++.|.++.|
T Consensus 257 ~~~~~~~i~i~d~G~gi~~~~~~~if~~~~~~~~~----------~~~~~~g~glGL~~~~~~~~~~gG~i~~~s~~~~G 326 (333)
T TIGR02966 257 RDGGGAEFSVTDTGIGIAPEHLPRLTERFYRVDKS----------RSRDTGGTGLGLAIVKHVLSRHHARLEIESELGKG 326 (333)
T ss_pred EcCCEEEEEEEecCCCCCHHHHhhhccCceecCcc----------cccCCCCCcccHHHHHHHHHHCCCEEEEEecCCCC
Confidence 88888999999999999999999999999987643 22335699999999999999999999999999999
Q ss_pred eEEEEEE
Q 017683 351 ELNMFSV 357 (368)
Q Consensus 351 t~f~i~l 357 (368)
|+|+|+|
T Consensus 327 t~~~i~l 333 (333)
T TIGR02966 327 STFSFIF 333 (333)
T ss_pred eEEEEEC
Confidence 9999975
No 31
>PRK10337 sensor protein QseC; Provisional
Probab=99.95 E-value=1.9e-26 Score=224.40 Aligned_cols=236 Identities=14% Similarity=0.111 Sum_probs=185.6
Q ss_pred ChhHHHHHHHHHHHHHHhhcCCCCCCchhHHHHHHHHHHHHHhccCcHHHHHHHHHHHhhccCcccccCChHHHHHHHHH
Q 017683 78 KPAVLKVRDWYLDSFRDLRSFPDIRSTSDERDFTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDR 157 (368)
Q Consensus 78 ~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~l~~~~~el~~~l~~~~~~~~~~~~~~~l~~ 157 (368)
..++..+.+.++...+++... . +...+++..+.|++++|+..+....+.+.... ...+....++..
T Consensus 213 ~~Ei~~l~~~~n~~~~~l~~~-----~---~~~~~~~~~~ahelrtpl~~i~~~~~~~~~~~------~~~~~~~~~l~~ 278 (449)
T PRK10337 213 PSEVRPLVEALNQLFARTHAM-----M---VRERRFTSDAAHELRSPLAALKVQTEVAQLSD------DDPQARKKALLQ 278 (449)
T ss_pred ChHHHHHHHHHHHHHHHHHHH-----H---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhccC------CCHHHHHHHHHH
Confidence 457777777777777766542 1 12234789999999999999887776554322 234445567777
Q ss_pred HHHhhHHHHHhHHHHhhhcCCCCCCCcccccccCCCHHHHHHHHHHHHHHHHHHhhCCCCceEEecCCC-ceeeecchhH
Q 017683 158 FYMSRIGIRMLIGQHVELHNPNPPPHCIGYIDTKMSPVQVARNASEHARCVCLREYGSAPDFNIYGDPS-FTFPYVPSHL 236 (368)
Q Consensus 158 ~~~~~~~~~~li~~ll~l~~~~~~~~~~~~~~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~d~~~l 236 (368)
+.....++..++++++.+++.. ........+++++.++++.++..+...+..+ .+.+.+..++. ..+.+|+..+
T Consensus 279 ~~~~~~~~~~l~~~ll~~~r~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~---~i~~~~~~~~~~~~~~~~~~~l 353 (449)
T PRK10337 279 LHAGIDRATRLVDQLLTLSRLD--SLDNLQDVAEIPLEDLLQSAVMDIYHTAQQA---GIDVRLTLNAHPVIRTGQPLLL 353 (449)
T ss_pred HHHHHHHHHHHHHHHHHHHhcC--CCCCCCCCcccCHHHHHHHHHHHHHHHHHHc---CCEEEEecCCCCceeecCHHHH
Confidence 7777888889999999999873 2223334478999999999999888777665 66777765544 5678999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEEEEeCCCceEEEEeecCCCCCCCCcccccccccccCCCCCCcccccccC
Q 017683 237 HLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAAD 316 (368)
Q Consensus 237 ~~vl~NLl~NAi~~~~~~~~~~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~~~~~~ 316 (368)
.+++.||++||++|+++ ++.|.|.+... .++|.|+|+|||++.++++|++||+.+..
T Consensus 354 ~~vl~Nli~NA~k~~~~--------~~~i~i~~~~~----~i~i~D~G~Gi~~~~~~~if~~f~~~~~~----------- 410 (449)
T PRK10337 354 SLLVRNLLDNAIRYSPQ--------GSVVDVTLNAR----NFTVRDNGPGVTPEALARIGERFYRPPGQ----------- 410 (449)
T ss_pred HHHHHHHHHHHHhhCCC--------CCeEEEEEEee----EEEEEECCCCCCHHHHHHhcccccCCCCC-----------
Confidence 99999999999999866 57788877543 69999999999999999999999986432
Q ss_pred CCCCCccccCHHHHHHHHHHhCCeEEEEecCCCeeEEEEEE
Q 017683 317 KGTMAGYGYGLPISRLYARYFGGDLQIISMEGYGELNMFSV 357 (368)
Q Consensus 317 ~~~~~g~GlGL~i~k~i~~~~gG~i~v~s~~g~Gt~f~i~l 357 (368)
..+|+||||+||+++++.|||+++++|.+++|++|+|.|
T Consensus 411 --~~~g~GlGL~iv~~i~~~~gg~l~~~s~~~~G~~~~i~~ 449 (449)
T PRK10337 411 --EATGSGLGLSIVRRIAKLHGMNVSFGNAPEGGFEAKVSW 449 (449)
T ss_pred --CCCccchHHHHHHHHHHHcCCEEEEEecCCCeEEEEEeC
Confidence 235999999999999999999999999999999999875
No 32
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
Probab=99.95 E-value=5.1e-27 Score=253.71 Aligned_cols=221 Identities=14% Similarity=0.201 Sum_probs=179.4
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHhhccCcccccCChHHHHHHHHHHHHhhHHHHHhHHHHhhhcCCCCCCCccccc
Q 017683 109 DFTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIGQHVELHNPNPPPHCIGYI 188 (368)
Q Consensus 109 ~~~~~l~~~~~~~~~~l~~l~~~~~el~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~li~~ll~l~~~~~~~~~~~~~ 188 (368)
...+++..++||+++||+.+.+.++.+..... ..+.....+..+..+..++..++++++++++. ..+.....
T Consensus 711 ~~~~~~~~isHelrtPL~~i~~~~~ll~~~~~------~~~~~~~~l~~~~~~~~~l~~li~~ll~~~~~--~~~~~~~~ 782 (1197)
T PRK09959 711 AKSQFLATMSHEIRTPISSIMGFLELLSGSGL------SKEQRVEAISLAYATGQSLLGLIGEILDVDKI--ESGNYQLQ 782 (1197)
T ss_pred HHHHHHHhcChhhCccHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hcCCceee
Confidence 44678899999999999999988877654322 23455667777777778888899999999987 44555556
Q ss_pred ccCCCHHHHHHHHHHHHHHHHHHhhCCCCceEEec--CCCceeeecchhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEE
Q 017683 189 DTKMSPVQVARNASEHARCVCLREYGSAPDFNIYG--DPSFTFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIR 266 (368)
Q Consensus 189 ~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~~~~--~~~~~~~~d~~~l~~vl~NLl~NAi~~~~~~~~~~~~~~~~I~ 266 (368)
..++++.+++++++..+...+..+ .+.+.+.. +....+.+|+..|.+|+.||++||++|+.. +.+.
T Consensus 783 ~~~~~l~~~i~~~~~~~~~~~~~~---~i~~~~~~~~~~~~~v~~d~~~l~qvl~NLl~NAik~~~~---------g~i~ 850 (1197)
T PRK09959 783 PQWVDIPTLVQNTCHSFGAIAASK---SIALSCSSTFPDHYLVKIDPQAFKQVLSNLLSNALKFTTE---------GAVK 850 (1197)
T ss_pred eeeeCHHHHHHHHHHHHHHHHHhc---CcEEEEecCCCCceEEEECHHHHHHHHHHHHHHHHHhCCC---------CCEE
Confidence 688999999999999998877766 55565543 344578999999999999999999999864 5555
Q ss_pred EEEE-----eCCCceEEEEeecCCCCCCCCcccccccccccCCCCCCcccccccCCCCCCccccCHHHHHHHHHHhCCeE
Q 017683 267 IIVA-----DGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAADKGTMAGYGYGLPISRLYARYFGGDL 341 (368)
Q Consensus 267 i~~~-----~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~~~~~~~~~~~g~GlGL~i~k~i~~~~gG~i 341 (368)
|.+. .+...+.|+|.|+|+|||++.++++|+|||+++.. ...+|+||||+||+++++.|||+|
T Consensus 851 i~~~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~~iF~~f~~~~~~------------~~~~G~GLGL~i~~~iv~~~gG~i 918 (1197)
T PRK09959 851 ITTSLGHIDDNHAVIKMTIMDSGSGLSQEEQQQLFKRYSQTSAG------------RQQTGSGLGLMICKELIKNMQGDL 918 (1197)
T ss_pred EEEEEeeecCCceEEEEEEEEcCCCCCHHHHHHhhccccccccC------------CCCCCcCchHHHHHHHHHHcCCEE
Confidence 5542 22335789999999999999999999999988653 234699999999999999999999
Q ss_pred EEEecCCCeeEEEEEEeccc
Q 017683 342 QIISMEGYGELNMFSVLLYS 361 (368)
Q Consensus 342 ~v~s~~g~Gt~f~i~lP~~~ 361 (368)
++.|.+|.||+|+|.||+..
T Consensus 919 ~v~s~~~~Gt~f~i~lP~~~ 938 (1197)
T PRK09959 919 SLESHPGIGTTFTITIPVEI 938 (1197)
T ss_pred EEEeCCCCcEEEEEEEEccc
Confidence 99999999999999999853
No 33
>PRK09470 cpxA two-component sensor protein; Provisional
Probab=99.95 E-value=1.3e-25 Score=219.13 Aligned_cols=241 Identities=15% Similarity=0.178 Sum_probs=188.2
Q ss_pred CChhHHHHHHHHHHHHHHhhcCCCCCCchhHHHHHHHHHHHHHhccCcHHHHHHHHHHHhhccCcccccCChHHHHHHHH
Q 017683 77 EKPAVLKVRDWYLDSFRDLRSFPDIRSTSDERDFTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLD 156 (368)
Q Consensus 77 ~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~l~~~~~el~~~l~~~~~~~~~~~~~~~l~ 156 (368)
...++..+.+.+....+++... .....+++..+.|++++|++.+......+..... ... .+.
T Consensus 218 ~~dEi~~l~~~~n~m~~~l~~~--------~~~~~~~~~~~shel~tpl~~i~~~~~~~~~~~~------~~~----~~~ 279 (461)
T PRK09470 218 GPQEFRQAGASFNQMVTALERM--------MTSQQRLLSDISHELRTPLTRLQLATALLRRRQG------ESK----ELE 279 (461)
T ss_pred ChHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHhhhHhhCCHHHHHHHHHHHHhhccC------ChH----HHH
Confidence 3467788888887777776542 2233457889999999999999877765543322 111 234
Q ss_pred HHHHhhHHHHHhHHHHhhhcCCCCCCCcccccccCCCHHHHHHHHHHHHHHHHHHhhCCCCceEEec-CCCceeeecchh
Q 017683 157 RFYMSRIGIRMLIGQHVELHNPNPPPHCIGYIDTKMSPVQVARNASEHARCVCLREYGSAPDFNIYG-DPSFTFPYVPSH 235 (368)
Q Consensus 157 ~~~~~~~~~~~li~~ll~l~~~~~~~~~~~~~~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~~d~~~ 235 (368)
.+.....++..++++++.+++.... .....+.+++..++++++..+....... .+.+.+.. +.+..+.+|+..
T Consensus 280 ~i~~~~~~l~~~i~~l~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~~~~~ 353 (461)
T PRK09470 280 RIETEAQRLDSMINDLLVLSRNQQK---NHLERETFKANSLWSEVLEDAKFEAEQM---GKSLTVSAPPGPWPINGNPNA 353 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcc---cccccceecHHHHHHHHHHHHHHHHHHC---CCeEEEecCCcceEEEECHHH
Confidence 4445666778899999999885321 1234578999999999998877665554 56667763 345589999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEEEEeCCCceEEEEeecCCCCCCCCcccccccccccCCCCCCccccccc
Q 017683 236 LHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAA 315 (368)
Q Consensus 236 l~~vl~NLl~NAi~~~~~~~~~~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~~~~~ 315 (368)
+.+++.||++||++|+. +.|.|.+...++.+.++|.|+|+||+++.++++|+|||+++..
T Consensus 354 l~~~l~nli~NA~~~~~----------~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~~~~~~~~---------- 413 (461)
T PRK09470 354 LASALENIVRNALRYSH----------TKIEVAFSVDKDGLTITVDDDGPGVPEEEREQIFRPFYRVDEA---------- 413 (461)
T ss_pred HHHHHHHHHHHHHHhCC----------CcEEEEEEEECCEEEEEEEECCCCCCHHHHHHhcCCCccCCcc----------
Confidence 99999999999999962 5688888888889999999999999999999999999998754
Q ss_pred CCCCCCccccCHHHHHHHHHHhCCeEEEEecCCCeeEEEEEEeccc
Q 017683 316 DKGTMAGYGYGLPISRLYARYFGGDLQIISMEGYGELNMFSVLLYS 361 (368)
Q Consensus 316 ~~~~~~g~GlGL~i~k~i~~~~gG~i~v~s~~g~Gt~f~i~lP~~~ 361 (368)
.....+|+|+||++|+++++.|||++.+.|.+++||+|+|.+|+..
T Consensus 414 ~~~~~~g~GlGL~iv~~~v~~~~G~l~~~s~~~~Gt~~~i~lp~~~ 459 (461)
T PRK09470 414 RDRESGGTGLGLAIVENAIQQHRGWVKAEDSPLGGLRLTIWLPLYK 459 (461)
T ss_pred cCCCCCCcchhHHHHHHHHHHCCCEEEEEECCCCeEEEEEEeeCCC
Confidence 2334569999999999999999999999999999999999999854
No 34
>PRK11073 glnL nitrogen regulation protein NR(II); Provisional
Probab=99.95 E-value=5.2e-26 Score=214.00 Aligned_cols=209 Identities=17% Similarity=0.216 Sum_probs=165.8
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHhhccCcccccCChHHHHHHHHHHHHhhHHHHHhHHHHhhhcCCCCCCCccccc
Q 017683 109 DFTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIGQHVELHNPNPPPHCIGYI 188 (368)
Q Consensus 109 ~~~~~l~~~~~~~~~~l~~l~~~~~el~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~li~~ll~l~~~~~~~~~~~~~ 188 (368)
...+++..++|++++||..+.+.++.+..... .+....+++.+.....++..++++++.+.+...
T Consensus 129 ~~~~~~~~iaHelr~pL~~i~~~~~~l~~~~~-------~~~~~~~~~~i~~~~~~l~~lv~~l~~~~~~~~-------- 193 (348)
T PRK11073 129 AARDLVRGLAHEIKNPLGGLRGAAQLLSKALP-------DPALTEYTKVIIEQADRLRNLVDRLLGPQRPGT-------- 193 (348)
T ss_pred HHHHHHHhhhHhhcChHHHHHHHHHHhhhcCC-------ChHHHHHHHHHHHHHHHHHHHHHHHhcccCCCC--------
Confidence 44678899999999999999988876665443 345677888888888888889999987765421
Q ss_pred ccCCCHHHHHHHHHHHHHHHHHHhhCCCCceEEecCCC-ceeeecchhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEE
Q 017683 189 DTKMSPVQVARNASEHARCVCLREYGSAPDFNIYGDPS-FTFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRI 267 (368)
Q Consensus 189 ~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~d~~~l~~vl~NLl~NAi~~~~~~~~~~~~~~~~I~i 267 (368)
....++..+++.+...+..... ..+.+.+..+.+ ..+.+|+..|.+++.||++||++|+... ++.|.|
T Consensus 194 ~~~~~l~~~~~~~~~~~~~~~~----~~i~i~~~~~~~~~~i~~d~~~l~~vl~nLl~NA~~~~~~~-------~~~i~i 262 (348)
T PRK11073 194 HVTESIHKVAERVVQLVSLELP----DNVRLIRDYDPSLPELAHDPDQIEQVLLNIVRNALQALGPE-------GGTITL 262 (348)
T ss_pred CccccHHHHHHHHHHHHhhhcc----CCcEEEEecCCCCCceeeCHHHHHHHHHHHHHHHHHHhccC-------CCeEEE
Confidence 2467888888887776654332 245555554433 4688999999999999999999998421 578888
Q ss_pred EEEeCC----------CceEEEEeecCCCCCCCCcccccccccccCCCCCCcccccccCCCCCCccccCHHHHHHHHHHh
Q 017683 268 IVADGL----------EDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAADKGTMAGYGYGLPISRLYARYF 337 (368)
Q Consensus 268 ~~~~~~----------~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~~~~~~~~~~~g~GlGL~i~k~i~~~~ 337 (368)
.+.... ..+.+.|.|+|+|||++..+++|+|||+++.. |+||||++|+.+++.|
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~i~v~D~G~Gi~~~~~~~iF~~~~~~~~~----------------g~GlGL~i~~~iv~~~ 326 (348)
T PRK11073 263 RTRTAFQLTLHGERYRLAARIDIEDNGPGIPPHLQDTLFYPMVSGREG----------------GTGLGLSIARNLIDQH 326 (348)
T ss_pred EEccccccccCCccCCceEEEEEEeCCCCCCHHHHhhccCCcccCCCC----------------CccCCHHHHHHHHHHc
Confidence 764321 13679999999999999999999999988755 9999999999999999
Q ss_pred CCeEEEEecCCCeeEEEEEEecc
Q 017683 338 GGDLQIISMEGYGELNMFSVLLY 360 (368)
Q Consensus 338 gG~i~v~s~~g~Gt~f~i~lP~~ 360 (368)
||+|+++|.+| ||+|+|.||+.
T Consensus 327 gG~i~~~s~~~-~~~f~i~lP~~ 348 (348)
T PRK11073 327 SGKIEFTSWPG-HTEFSVYLPIR 348 (348)
T ss_pred CCeEEEEecCC-ceEEEEEEecC
Confidence 99999999888 59999999963
No 35
>PRK09467 envZ osmolarity sensor protein; Provisional
Probab=99.95 E-value=2.7e-25 Score=215.42 Aligned_cols=230 Identities=15% Similarity=0.145 Sum_probs=176.5
Q ss_pred CChhHHHHHHHHHHHHHHhhcCCCCCCchhHHHHHHHHHHHHHhccCcHHHHHHHHHHHhhccCcccccCChHHHHHHHH
Q 017683 77 EKPAVLKVRDWYLDSFRDLRSFPDIRSTSDERDFTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLD 156 (368)
Q Consensus 77 ~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~l~~~~~el~~~l~~~~~~~~~~~~~~~l~ 156 (368)
...++..+.+.++...+++.+. .+....++..++|++++|++.+....+.+... .....+
T Consensus 204 ~~~Ei~~L~~~~n~m~~~l~~~--------~~~~~~~~~~lsHeLrtPL~~i~~~~e~~~~~------------~~~~~~ 263 (435)
T PRK09467 204 GASEVRSVTRAFNQMAAGIKQL--------EDDRTLLMAGVSHDLRTPLTRIRLATEMMSEE------------DGYLAE 263 (435)
T ss_pred CchHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHhhhhccchHHHHHHHHHhcccc------------hHHHHH
Confidence 3467778887777777766432 22345589999999999999987655433211 111222
Q ss_pred HHHHhhHHHHHhHHHHhhhcCCCCCCCcccccccCCCHHHHHHHHHHHHHHHHHHhhCCCCceEEecCCC-ceeeecchh
Q 017683 157 RFYMSRIGIRMLIGQHVELHNPNPPPHCIGYIDTKMSPVQVARNASEHARCVCLREYGSAPDFNIYGDPS-FTFPYVPSH 235 (368)
Q Consensus 157 ~~~~~~~~~~~li~~ll~l~~~~~~~~~~~~~~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~d~~~ 235 (368)
.+......+..++++++.+++.... ....++++.+++++++.... . ....+.+..+.+ ..+.+|+..
T Consensus 264 ~i~~~~~~~~~~i~~~l~~~r~~~~-----~~~~~~~l~~~~~~~~~~~~----~---~~~~i~~~~~~~~~~~~~~~~~ 331 (435)
T PRK09467 264 SINKDIEECNAIIEQFIDYLRTGQE-----MPMEMADLNALLGEVIAAES----G---YEREIETALQPGPIEVPMNPIA 331 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCC-----CCccccCHHHHHHHHHHHhh----h---cCCeEEEecCCCCceEEECHHH
Confidence 3344555677789999999876321 12368899999988876543 1 134555554433 489999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEEEEeCCCceEEEEeecCCCCCCCCcccccccccccCCCCCCccccccc
Q 017683 236 LHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAA 315 (368)
Q Consensus 236 l~~vl~NLl~NAi~~~~~~~~~~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~~~~~ 315 (368)
|.+++.||++||++|+ .+.|.|++...++.+.|+|.|+|+||+++.++++|+|||+.+..
T Consensus 332 l~~il~NLl~NA~k~~----------~~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~~~~~f~~~~~~---------- 391 (435)
T PRK09467 332 IKRALANLVVNAARYG----------NGWIKVSSGTEGKRAWFQVEDDGPGIPPEQLKHLFQPFTRGDSA---------- 391 (435)
T ss_pred HHHHHHHHHHHHHHhC----------CCeEEEEEEecCCEEEEEEEecCCCcCHHHHHHhcCCcccCCCC----------
Confidence 9999999999999995 37899999888889999999999999999999999999987644
Q ss_pred CCCCCCccccCHHHHHHHHHHhCCeEEEEecCCCeeEEEEEEecc
Q 017683 316 DKGTMAGYGYGLPISRLYARYFGGDLQIISMEGYGELNMFSVLLY 360 (368)
Q Consensus 316 ~~~~~~g~GlGL~i~k~i~~~~gG~i~v~s~~g~Gt~f~i~lP~~ 360 (368)
+..+|+|+||+||+++++.|||++.+.+.+++||+|+|.||+.
T Consensus 392 --~~~~g~GlGL~iv~~i~~~~~g~l~i~~~~~~G~~~~i~lp~~ 434 (435)
T PRK09467 392 --RGSSGTGLGLAIVKRIVDQHNGKVELGNSEEGGLSARAWLPLT 434 (435)
T ss_pred --CCCCCeehhHHHHHHHHHHCCCEEEEEECCCCcEEEEEEEeCC
Confidence 2246999999999999999999999999999999999999975
No 36
>PRK11360 sensory histidine kinase AtoS; Provisional
Probab=99.94 E-value=9e-26 Score=226.85 Aligned_cols=215 Identities=18% Similarity=0.238 Sum_probs=178.4
Q ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHhhccCcccccCChHHHHHHHHHHHHhhHHHHHhHHHHhhhcCCCCCCCcccc
Q 017683 108 RDFTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIGQHVELHNPNPPPHCIGY 187 (368)
Q Consensus 108 ~~~~~~l~~~~~~~~~~l~~l~~~~~el~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~li~~ll~l~~~~~~~~~~~~ 187 (368)
..+.+++..+.|++++|+..+.+.++.+..... .....++++.+.....++..++++++.+++... .
T Consensus 388 ~~l~~~~~~~~hel~~~l~~i~~~~~~~~~~~~-------~~~~~~~l~~i~~~~~~~~~~~~~l~~~~~~~~--~---- 454 (607)
T PRK11360 388 AALGELVAGVAHEIRNPLTAIRGYVQIWRQQTS-------DPPSQEYLSVVLREVDRLNKVIDQLLEFSRPRE--S---- 454 (607)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhccc-------ChhHHHHHHHHHHHHHHHHHHHHHHHHhhCCCc--C----
Confidence 445678899999999999999888866654322 345667778777788888889999999988632 1
Q ss_pred cccCCCHHHHHHHHHHHHHHHHHHhhCCCCceEEecCCC-ceeeecchhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEE
Q 017683 188 IDTKMSPVQVARNASEHARCVCLREYGSAPDFNIYGDPS-FTFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIR 266 (368)
Q Consensus 188 ~~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~d~~~l~~vl~NLl~NAi~~~~~~~~~~~~~~~~I~ 266 (368)
...++++..+++.+...+......+ .+.+.+..+++ ..+..|+..|.+++.|++.||++|+.. ++.|.
T Consensus 455 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~nli~na~~~~~~--------~~~i~ 523 (607)
T PRK11360 455 QWQPVSLNALVEEVLQLFQTAGVQA---RVDFETELDNELPPIWADPELLKQVLLNILINAVQAISA--------RGKIR 523 (607)
T ss_pred ccceecHHHHHHHHHHHHHHhhhcc---CcEEEEEcCCCCCeEEECHHHHHHHHHHHHHHHHHHhcC--------CCeEE
Confidence 1368999999999998877654433 56666665544 468889999999999999999999865 58899
Q ss_pred EEEEeCCCc-eEEEEeecCCCCCCCCcccccccccccCCCCCCcccccccCCCCCCccccCHHHHHHHHHHhCCeEEEEe
Q 017683 267 IIVADGLED-VTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAADKGTMAGYGYGLPISRLYARYFGGDLQIIS 345 (368)
Q Consensus 267 i~~~~~~~~-~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~~~~~~~~~~~g~GlGL~i~k~i~~~~gG~i~v~s 345 (368)
|.+...++. +.|.|.|+|+|||++.++++|+|||++++. |+|+||++|+.+++.|||+++++|
T Consensus 524 v~~~~~~~~~~~i~v~D~G~G~~~~~~~~~f~~~~~~~~~----------------g~glGL~~~~~~~~~~~G~i~~~s 587 (607)
T PRK11360 524 IRTWQYSDGQVAVSIEDNGCGIDPELLKKIFDPFFTTKAK----------------GTGLGLALSQRIINAHGGDIEVES 587 (607)
T ss_pred EEEEEcCCCEEEEEEEeCCCCCCHHHHhhhcCCceeCCCC----------------CCchhHHHHHHHHHHcCCEEEEEE
Confidence 998876666 999999999999999999999999988755 999999999999999999999999
Q ss_pred cCCCeeEEEEEEecccc
Q 017683 346 MEGYGELNMFSVLLYSY 362 (368)
Q Consensus 346 ~~g~Gt~f~i~lP~~~~ 362 (368)
.+|+||+|+|.||....
T Consensus 588 ~~~~Gt~~~i~lp~~~~ 604 (607)
T PRK11360 588 EPGVGTTFTLYLPINPQ 604 (607)
T ss_pred cCCCceEEEEEecCCCC
Confidence 99999999999998653
No 37
>PRK13557 histidine kinase; Provisional
Probab=99.93 E-value=6.8e-25 Score=218.04 Aligned_cols=221 Identities=18% Similarity=0.223 Sum_probs=172.5
Q ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHhhccCcccccCChHHHHHHHHHHHHhhHHHHHhHHHHhhhcCCCCCCCccc
Q 017683 107 ERDFTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIGQHVELHNPNPPPHCIG 186 (368)
Q Consensus 107 ~~~~~~~l~~~~~~~~~~l~~l~~~~~el~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~li~~ll~l~~~~~~~~~~~ 186 (368)
.+.+..++..+.|++++|+..+.+.+..+..... ......+.+...++.+.....++..++++++.+++...
T Consensus 160 ~~~l~~~~~~i~h~l~~pl~~i~~~~~~l~~~~~--~~~~~~~~~~~~l~~i~~~~~~~~~li~~l~~~~~~~~------ 231 (540)
T PRK13557 160 MEALGQLTGGIAHDFNNLLQVMSGYLDVIQAALS--HPDADRGRMARSVENIRAAAERAATLTQQLLAFARKQR------ 231 (540)
T ss_pred HHHhhhhhhhhhHHhhhHHHHHHhHHHHHHHhhc--cCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCC------
Confidence 3445668888999999999999888876654433 11123456677788777777888889999999887521
Q ss_pred ccccCCCHHHHHHHHHHHHHHHHHHhhCCCCceEEecCCC-ceeeecchhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCE
Q 017683 187 YIDTKMSPVQVARNASEHARCVCLREYGSAPDFNIYGDPS-FTFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPI 265 (368)
Q Consensus 187 ~~~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~d~~~l~~vl~NLl~NAi~~~~~~~~~~~~~~~~I 265 (368)
.....+++..+++.+...+.... ...+.+.+..... ..+.+|+..+.+++.||+.||++|++. ++.|
T Consensus 232 ~~~~~~~l~~~i~~~~~~~~~~~----~~~~~i~~~~~~~~~~~~~d~~~l~~vl~nll~NA~~~~~~--------~~~i 299 (540)
T PRK13557 232 LEGRVLNLNGLVSGMGELAERTL----GDAVTIETDLAPDLWNCRIDPTQAEVALLNVLINARDAMPE--------GGRV 299 (540)
T ss_pred CCCcccCHHHHHHHHHHHHHHhc----CCCeEEEEecCCCCCceeeCHHHHHHHHHHHHHHHHHhccc--------CCeE
Confidence 12367889888887766544321 2244555554433 468889999999999999999999876 5777
Q ss_pred EEEEEe---------------CCCceEEEEeecCCCCCCCCcccccccccccCCCCCCcccccccCCCCCCccccCHHHH
Q 017683 266 RIIVAD---------------GLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAADKGTMAGYGYGLPIS 330 (368)
Q Consensus 266 ~i~~~~---------------~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~~~~~~~~~~~g~GlGL~i~ 330 (368)
.|.... .++.+.|.|.|+|+|||++..+++|++||+++.. ..|+||||++|
T Consensus 300 ~i~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~G~Gi~~~~~~~if~~~~~~~~~--------------~~g~GlGL~i~ 365 (540)
T PRK13557 300 TIRTRNVEIEDEDLAMYHGLPPGRYVSIAVTDTGSGMPPEILARVMDPFFTTKEE--------------GKGTGLGLSMV 365 (540)
T ss_pred EEEEeeeccCccccccccCCCCCCEEEEEEEcCCCCCCHHHHHhccCCCcccCCC--------------CCCCCccHHHH
Confidence 776642 4567899999999999999999999999998755 46999999999
Q ss_pred HHHHHHhCCeEEEEecCCCeeEEEEEEeccc
Q 017683 331 RLYARYFGGDLQIISMEGYGELNMFSVLLYS 361 (368)
Q Consensus 331 k~i~~~~gG~i~v~s~~g~Gt~f~i~lP~~~ 361 (368)
+.+++.|||.|++.|.+|.||+|+|+||...
T Consensus 366 ~~~v~~~gG~i~~~s~~~~G~~f~i~lP~~~ 396 (540)
T PRK13557 366 YGFAKQSGGAVRIYSEVGEGTTVRLYFPASD 396 (540)
T ss_pred HHHHHHCCCEEEEEecCCCceEEEEEeeCCC
Confidence 9999999999999999999999999999854
No 38
>COG0642 BaeS Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=99.93 E-value=3.4e-24 Score=198.36 Aligned_cols=218 Identities=18% Similarity=0.220 Sum_probs=173.3
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHhhccCcccccCChHHHHHHHHHHHHhhHHHHHhHHHHhhhcCCCCCCCcccccc
Q 017683 110 FTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIGQHVELHNPNPPPHCIGYID 189 (368)
Q Consensus 110 ~~~~l~~~~~~~~~~l~~l~~~~~el~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~li~~ll~l~~~~~~~~~~~~~~ 189 (368)
...++..+.|++++|+..+......+... . .+.....+..+.....++..++++++.+++..... ......
T Consensus 115 ~~~~~~~~~hel~~pl~~i~~~~~~~~~~-~-------~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~ 185 (336)
T COG0642 115 KREFLANISHELRTPLTAIRGLLELLLEG-L-------LDPQRELLEIIEEEAERLLRLVNDLLDLSRLEAGT-KLKLLL 185 (336)
T ss_pred HHHHHHhhhhhhcCcHHHHHHHHHHhccC-C-------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-ccccCC
Confidence 56688888999999999998866633332 1 11145555555556666777899999998873321 122224
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHhhCCCCceEEecCCCceeeecchhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEEE
Q 017683 190 TKMSPVQVARNASEHARCVCLREYGSAPDFNIYGDPSFTFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIV 269 (368)
Q Consensus 190 ~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~d~~~l~~vl~NLl~NAi~~~~~~~~~~~~~~~~I~i~~ 269 (368)
...++..+++.++..+...+... .+.+....+....+..|+.++.+++.||+.||++|++. +.|.|.+
T Consensus 186 ~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~v~~~~~~l~~vl~nLi~NAi~~~~~---------~~i~i~~ 253 (336)
T COG0642 186 ELVDLAELLEEVVRLLAPLAQEK---GIELAVDLPELPYVLGDPERLRQVLVNLLSNAIKYTPG---------GEITISV 253 (336)
T ss_pred CCcCHHHHHHHHHHHHHHHHHHc---CCEEEEecCCCceEeeCHHHHHHHHHHHHHHHhccCCC---------CeEEEEE
Confidence 67779999999999888776644 44555444456788899999999999999999999861 7899999
Q ss_pred EeCCCceEEEEeecCCCCCCCCcccccccccccCCCCCCcccccccCCCCCCccccCHHHHHHHHHHhCCeEEEEecCCC
Q 017683 270 ADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAADKGTMAGYGYGLPISRLYARYFGGDLQIISMEGY 349 (368)
Q Consensus 270 ~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~~~~~~~~~~~g~GlGL~i~k~i~~~~gG~i~v~s~~g~ 349 (368)
...++.+.++|.|+|+||+++.++++|++|++++.. ..|+|+||++|+.+++.|||.+.+.|.++.
T Consensus 254 ~~~~~~i~i~V~D~G~Gi~~~~~~~if~~~~~~~~~--------------~~g~GlGL~i~~~~~~~~~g~i~~~~~~~~ 319 (336)
T COG0642 254 RQDDEQVTISVEDTGPGIPEEELERIFEPFFRTDKS--------------RSGTGLGLAIVKRIVELHGGTISVESEPGK 319 (336)
T ss_pred EecCCeEEEEEEcCCCCCCHHHHHHhccCeeccCCC--------------CCCCCccHHHHHHHHHHcCCEEEEEecCCC
Confidence 888889999999999999999999999999999876 239999999999988999999999999988
Q ss_pred eeEEEEEEecccc
Q 017683 350 GELNMFSVLLYSY 362 (368)
Q Consensus 350 Gt~f~i~lP~~~~ 362 (368)
||+|+|++|....
T Consensus 320 Gt~~~i~lP~~~~ 332 (336)
T COG0642 320 GTTFTIRLPLAPA 332 (336)
T ss_pred ceEEEEEEecccc
Confidence 9999999998753
No 39
>COG4192 Signal transduction histidine kinase regulating phosphoglycerate transport system [Signal transduction mechanisms]
Probab=99.91 E-value=5.4e-23 Score=187.32 Aligned_cols=271 Identities=15% Similarity=0.164 Sum_probs=201.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHhcCCccccCChhHHHHHHHHHHHHHHhhcCCCCCCchhHHHHHHHHHHHHHhccCcHHHH
Q 017683 49 SAQFLHKELPIRIARRAIELETLPYGLSEKPAVLKVRDWYLDSFRDLRSFPDIRSTSDERDFTQMIKAIKVRHNNVVPMM 128 (368)
Q Consensus 49 ~~~~~~~~l~~rv~~r~~~l~~~~~~l~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~l 128 (368)
....+.+-+..++.+.+.+|...+..+.. ++.+-.+ ...+--....++-+..+....++-+..++|++..||..|
T Consensus 395 Ria~llRl~l~~~n~kt~~l~~rnq~L~~--EveeR~e---~ea~L~~~Q~ELiQaAKlAvVGqTmTslaHEinQPLnAm 469 (673)
T COG4192 395 RIAQLLRLLLQRVNEKTQSLRERNQELQA--EVEERQE---AEAHLKKTQGELIQAAKLAVVGQTMTSLAHEINQPLNAM 469 (673)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHH--HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHH
Confidence 33345555666666666666544433322 1111110 000111112233344555666778889999999999999
Q ss_pred HHHHHHHhhccCcccccCChHHHHHHHHHHHHhhHHHHHhHHHHhhhcCCCCCCCcccccccCCCHHHHHHHHHHHHHHH
Q 017683 129 ALGLQQLKKEMDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIGQHVELHNPNPPPHCIGYIDTKMSPVQVARNASEHARCV 208 (368)
Q Consensus 129 ~~~~~el~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~li~~ll~l~~~~~~~~~~~~~~~~~~l~~li~~~~~~~~~~ 208 (368)
.+++-.-+..+. .........+++.+..-..++..+|+.+..|+|.......+ .++++.+.+..+.+.+...
T Consensus 470 saYLFsA~~A~e----~~~s~qa~~~L~kie~L~eR~~~Iv~sLRqF~Rk~s~~~~l----qpV~L~~~v~~AweLl~~k 541 (673)
T COG4192 470 SAYLFSARLALE----EAPSAQAATSLDKIENLTERMGKIVNSLRQFARKNSSDESL----QPVRLNSVVEQAWELLQTK 541 (673)
T ss_pred HHHHHHHHHHHh----hCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCc----ccccHHHHHHHHHHHHHhh
Confidence 988855554444 33466778888888877888888999999999984322222 6899999999999988877
Q ss_pred HHHhhCCCCceEEec-CCCceeeecchhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEEEEe-CCCceEEEEeecCCC
Q 017683 209 CLREYGSAPDFNIYG-DPSFTFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVAD-GLEDVTIKVSDEGGG 286 (368)
Q Consensus 209 ~~~~~~~~~~i~~~~-~~~~~~~~d~~~l~~vl~NLl~NAi~~~~~~~~~~~~~~~~I~i~~~~-~~~~~~i~V~D~G~G 286 (368)
.+.+ .+.+.. ..++.+.+|...++|||.||+-||++++... .+.|.|.+.. ..+.+++.|.|||+|
T Consensus 542 hk~r-----Q~~Li~ptD~~~V~gd~v~ieQVlvNl~~NaldA~~h~-------~p~i~~~~~~~~~e~l~i~i~DnGqG 609 (673)
T COG4192 542 HKRR-----QIKLINPTDDLMVMGDAVSIEQVLVNLIVNALDASTHF-------APWIKLIALGTEQEMLRIAIIDNGQG 609 (673)
T ss_pred hhhc-----cccccCCcccceecchhhhHHHHHHHHHHHHHhhhccC-------CceEEEEeecCcccceEEEEecCCCC
Confidence 6665 233332 3567899999999999999999999999762 3788888865 677899999999999
Q ss_pred CCCCCcccccccccccCCCCCCcccccccCCCCCCccccCHHHHHHHHHHhCCeEEEEecCCCeeEEEEEEecc
Q 017683 287 IPRSGLPKIFTYLYSTARNPLDENTDLAADKGTMAGYGYGLPISRLYARYFGGDLQIISMEGYGELNMFSVLLY 360 (368)
Q Consensus 287 i~~~~~~~if~~f~~~~~~~~~~~~~~~~~~~~~~g~GlGL~i~k~i~~~~gG~i~v~s~~g~Gt~f~i~lP~~ 360 (368)
.|.+..+++|.||.++|.- |.|+||+||..+++.+.|++.+.|...+|+++.+.|...
T Consensus 610 wp~~l~dkLl~PFttsK~v----------------gLGlGLSIsqSlmeqmqG~l~lAStLt~nA~ViL~f~v~ 667 (673)
T COG4192 610 WPHELVDKLLTPFTTSKEV----------------GLGLGLSISQSLMEQMQGRLALASTLTKNAMVILEFQVD 667 (673)
T ss_pred CchhHHHHhcCCccccccc----------------ccccchhHHHHHHHHhcCcchHhhhcccCcEEEEEEeec
Confidence 9999999999999998877 999999999999999999999999999999999988654
No 40
>PRK11086 sensory histidine kinase DcuS; Provisional
Probab=99.90 E-value=1.1e-22 Score=202.50 Aligned_cols=125 Identities=22% Similarity=0.236 Sum_probs=106.4
Q ss_pred CCceEEecCCCceeeecc---hhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEEEEeCCCceEEEEeecCCCCCCCCc
Q 017683 216 APDFNIYGDPSFTFPYVP---SHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGL 292 (368)
Q Consensus 216 ~~~i~~~~~~~~~~~~d~---~~l~~vl~NLl~NAi~~~~~~~~~~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~ 292 (368)
.+.+.+..+..+....++ ..|.+|+.||++||++|+.... ++.|.|++...++.+.|.|.|+|+|||++..
T Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~l~~vl~nLl~NAi~~~~~~~------~~~I~i~~~~~~~~~~i~V~D~G~gi~~~~~ 484 (542)
T PRK11086 411 GITLIISEDSQLPDSGDEDQVHELITILGNLIENALEAVGGEE------GGEISVSLHYRNGWLHCEVSDDGPGIAPDEI 484 (542)
T ss_pred CCEEEEeCCCCCCcccccccHHHHHHHHHHHHHHHHHHhhcCC------CcEEEEEEEEcCCEEEEEEEECCCCCCHHHH
Confidence 556666554444433333 4699999999999999985421 4789999998899999999999999999999
Q ss_pred ccccccccccCCCCCCcccccccCCCCCCccccCHHHHHHHHHHhCCeEEEEecCCCeeEEEEEEecccc
Q 017683 293 PKIFTYLYSTARNPLDENTDLAADKGTMAGYGYGLPISRLYARYFGGDLQIISMEGYGELNMFSVLLYSY 362 (368)
Q Consensus 293 ~~if~~f~~~~~~~~~~~~~~~~~~~~~~g~GlGL~i~k~i~~~~gG~i~v~s~~g~Gt~f~i~lP~~~~ 362 (368)
+++|++||+++.. |+|+||++|+.+++.|||+|+++|.+|.||+|+|.||....
T Consensus 485 ~~iF~~~~~~~~~----------------g~GlGL~iv~~iv~~~~G~i~v~s~~~~G~~f~i~lP~~~~ 538 (542)
T PRK11086 485 DAIFDKGYSTKGS----------------NRGVGLYLVKQSVENLGGSIAVESEPGVGTQFFVQIPWDGE 538 (542)
T ss_pred HHHHhCCCccCCC----------------CCcCcHHHHHHHHHHcCCEEEEEeCCCCcEEEEEEEeCCCC
Confidence 9999999988755 99999999999999999999999999999999999998754
No 41
>PRK15053 dpiB sensor histidine kinase DpiB; Provisional
Probab=99.90 E-value=3.1e-22 Score=199.59 Aligned_cols=203 Identities=18% Similarity=0.178 Sum_probs=142.7
Q ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHhhccCcccccCChHHHHHHHHHHHHhhHHHHHhHHHHhhhcCCCCCCCcccc
Q 017683 108 RDFTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIGQHVELHNPNPPPHCIGY 187 (368)
Q Consensus 108 ~~~~~~l~~~~~~~~~~l~~l~~~~~el~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~li~~ll~l~~~~~~~~~~~~ 187 (368)
+.+.+.+....|++++++..+.+.++.- ..++.++.+......+..+++.+......
T Consensus 336 ~~~~e~l~~~~he~~n~L~~i~g~l~~~--------------~~~~~~~~i~~~s~~~~~l~~~l~~~~~~--------- 392 (545)
T PRK15053 336 KQYVESLRTLRHEHLNWMSTLNGLLQMK--------------EYDRVLEMVQGESQAQQQLIDSLREAFAD--------- 392 (545)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhhc--------------hhhHHHHHHHHHHHHHHHHHHHHHHhccc---------
Confidence 3445566777888888888776654331 11233444444555566666666554321
Q ss_pred cccCCCHHHHHHHHHHHHHHHHHHhhCCCCceEEecCCC---ceeeecchhHHHHHHHHHHHHHHHHHHhhcCCCCCCCC
Q 017683 188 IDTKMSPVQVARNASEHARCVCLREYGSAPDFNIYGDPS---FTFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPP 264 (368)
Q Consensus 188 ~~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~~~d~~~l~~vl~NLl~NAi~~~~~~~~~~~~~~~~ 264 (368)
-.+..++.... ..+... .+.+.+..+.+ ++...|+..|.+++.||++||++|....... ++.
T Consensus 393 ----~~~~~~l~~~~----~~~~~~---~i~~~~~~~~~~~~l~~~~~~~~l~~vl~nLl~NAi~~~~~~~~~----~~~ 457 (545)
T PRK15053 393 ----RQVAGLLFGKV----QRAREL---GLKMVIVPGSQLSQLPPGLDSTEFAAIVGNLLDNAFEASLRSDEG----NKI 457 (545)
T ss_pred ----HHHHHHHHHHH----HHHHHh---CCceEEcCCCccccccccCCHHHHHHHHHHHHHHHHHHHhhCCCC----Cce
Confidence 01111211111 122222 45555543322 4566789999999999999999997532110 367
Q ss_pred EEEEEEeCCCceEEEEeecCCCCCCCCcccccccccccCCCCCCcccccccCCCCCCccccCHHHHHHHHHHhCCeEEEE
Q 017683 265 IRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAADKGTMAGYGYGLPISRLYARYFGGDLQII 344 (368)
Q Consensus 265 I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~~~~~~~~~~~g~GlGL~i~k~i~~~~gG~i~v~ 344 (368)
|.|.+...++.+.+.|.|+|+|||++..+++|++||+++.. ..+|+|+||++||.+++.|||.|+++
T Consensus 458 i~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~iF~~~~~tk~~-------------~~~g~GlGL~ivk~iv~~~~G~i~v~ 524 (545)
T PRK15053 458 VELFLSDEGDDVVIEVADQGCGVPESLRDKIFEQGVSTRAD-------------EPGEHGIGLYLIASYVTRCGGVITLE 524 (545)
T ss_pred EEEEEEECCCEEEEEEEeCCCCcCHHHHHHHhCCCCCCCCC-------------CCCCceeCHHHHHHHHHHcCCEEEEE
Confidence 89988888889999999999999999999999999998754 12479999999999999999999999
Q ss_pred ecCCCeeEEEEEEeccc
Q 017683 345 SMEGYGELNMFSVLLYS 361 (368)
Q Consensus 345 s~~g~Gt~f~i~lP~~~ 361 (368)
|.+|.||+|+|.||...
T Consensus 525 s~~~~Gt~f~i~lP~~~ 541 (545)
T PRK15053 525 DNDPCGTLFSIFIPKVK 541 (545)
T ss_pred ECCCCeEEEEEEECCCC
Confidence 99999999999999864
No 42
>PF02518 HATPase_c: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; InterPro: IPR003594 This domain is found in several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases [], heat shock protein HSP90 [, , ], phytochrome-like ATPases and DNA mismatch repair proteins. The fold of this domain consists of two layers, alpha/beta, which contains an 8-stranded mixed beta-sheet. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0005524 ATP binding; PDB: 3JZ3_A 3DGE_A 2C2A_A 2BU5_A 2BU8_A 2BU6_A 2BU7_A 2BU2_A 2BTZ_A 3K99_D ....
Probab=99.89 E-value=5e-23 Score=161.16 Aligned_cols=110 Identities=31% Similarity=0.531 Sum_probs=102.2
Q ss_pred ecchhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEEEEeCCCceEEEEeecCCCCCCCCcccccccccccCCCCCCcc
Q 017683 231 YVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDEN 310 (368)
Q Consensus 231 ~d~~~l~~vl~NLl~NAi~~~~~~~~~~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~ 310 (368)
+|+..|.+++.||+.||++|+.+ ++.|.|.+...++.+.|+|.|+|+|||++.++++|.+|++.+..
T Consensus 1 gd~~~l~~il~~ll~Na~~~~~~--------~~~I~i~~~~~~~~~~i~i~d~G~gi~~~~l~~~~~~~~~~~~~----- 67 (111)
T PF02518_consen 1 GDPDRLRQILSELLDNAIKHSPE--------GGKIDITIEEDDDHLSIEISDNGVGIPPEELEKLFEPFFTSDKS----- 67 (111)
T ss_dssp ETHHHHHHHHHHHHHHHHHHHHH--------TSEEEEEEEEETTEEEEEEEESSSSTTHHHHHHHCSTTSHSSSS-----
T ss_pred CcHHHHHHHHHHHHHHHHHHhcC--------CCEEEEEEEEecCeEEEEEEeccccccccccccchhhccccccc-----
Confidence 68899999999999999999998 68999999999999999999999999999999999999988753
Q ss_pred cccccCCCCCCccccCHHHHHHHHHHhCCeEEEEecCCCeeEEEEEEec
Q 017683 311 TDLAADKGTMAGYGYGLPISRLYARYFGGDLQIISMEGYGELNMFSVLL 359 (368)
Q Consensus 311 ~~~~~~~~~~~g~GlGL~i~k~i~~~~gG~i~v~s~~g~Gt~f~i~lP~ 359 (368)
....+|+|+||++|+.+++.|+|++++.+.+++||+|++.+|+
T Consensus 68 ------~~~~~g~GlGL~~~~~~~~~~~g~l~~~~~~~~gt~v~~~~p~ 110 (111)
T PF02518_consen 68 ------ETSISGHGLGLYIVKQIAERHGGELTIESSEGGGTTVTFTLPL 110 (111)
T ss_dssp ------SGGSSSSSHHHHHHHHHHHHTTEEEEEEEETTTEEEEEEEEEG
T ss_pred ------ccccCCCChHHHHHHHHHHHCCCEEEEEEcCCCcEEEEEEEEC
Confidence 2334689999999999999999999999999999999999997
No 43
>PRK13560 hypothetical protein; Provisional
Probab=99.89 E-value=1.5e-21 Score=203.14 Aligned_cols=201 Identities=14% Similarity=0.091 Sum_probs=138.7
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHhhccCcccccCChHHHHHHHHHHHHhhHHHHHhHHHHhhhcCCCCCCCccccc
Q 017683 109 DFTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIGQHVELHNPNPPPHCIGYI 188 (368)
Q Consensus 109 ~~~~~l~~~~~~~~~~l~~l~~~~~el~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~li~~ll~l~~~~~~~~~~~~~ 188 (368)
....++..++|+++|||+.+.+.+..+...+. .+....++.........+..+.+.+ .+.. .
T Consensus 604 ~~~~~l~~isHelrnpL~~I~~~~~l~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~l---~~~~--------~ 665 (807)
T PRK13560 604 EKEVLLKEIHHRVKNNLQIISSLLDLQAEKLH-------DEEAKCAFAESQDRICAMALAHEKL---YQSE--------D 665 (807)
T ss_pred HHHHHHHHhHHHHhChHHHHHHHHHHhhhhcC-------CHHHHHHHHHHHHHHHHHHHHHHHH---hccc--------c
Confidence 35678899999999999999888776665544 2233333333222222222233332 2211 1
Q ss_pred ccCCCHHHHHHHHHHHHHHHHHHhhCCCCceEEecCCCceeeecchhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEE
Q 017683 189 DTKMSPVQVARNASEHARCVCLREYGSAPDFNIYGDPSFTFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRII 268 (368)
Q Consensus 189 ~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~d~~~l~~vl~NLl~NAi~~~~~~~~~~~~~~~~I~i~ 268 (368)
...+++.++++.++..+...+... ...+.+.+..+.......+...+.+||.||+.||+||+.+.. ..+.|.|.
T Consensus 666 ~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~il~NLl~NAik~~~~~~-----~~~~i~i~ 739 (807)
T PRK13560 666 LADIDFLDYIESLTAHLKNSFAID-FGRIDCKIDADDGCLDIDKAIPCGLIISELLSNALKHAFPDG-----AAGNIKVE 739 (807)
T ss_pred chhccHHHHHHHHHHHHHHHhccc-cCceEEEEecCccccccccccchHHHHHHHHHHHHHhhccCC-----CCceEEEE
Confidence 257899999999988887665443 112334444333333333455688999999999999986521 13678888
Q ss_pred EEeC-CCceEEEEeecCCCCCCCCcccccccccccCCCCCCcccccccCCCCCCccccCHHHHHHHHHHhCCeEEEEecC
Q 017683 269 VADG-LEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAADKGTMAGYGYGLPISRLYARYFGGDLQIISME 347 (368)
Q Consensus 269 ~~~~-~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~~~~~~~~~~~g~GlGL~i~k~i~~~~gG~i~v~s~~ 347 (368)
+... ++.+.|.|+|||+|||++.. . ..|.||||+|||.|++.|||.|+++|.
T Consensus 740 ~~~~~~~~v~i~V~D~G~GI~~~~~----------~----------------~~~~gLGLai~~~iv~~~gG~I~v~S~- 792 (807)
T PRK13560 740 IREQGDGMVNLCVADDGIGLPAGFD----------F----------------RAAETLGLQLVCALVKQLDGEIALDSR- 792 (807)
T ss_pred EEEcCCCEEEEEEEeCCCcCCcccc----------c----------------cccCCccHHHHHHHHHHcCCEEEEEcC-
Confidence 8776 67899999999999999731 1 137789999999999999999999994
Q ss_pred CCeeEEEEEEeccc
Q 017683 348 GYGELNMFSVLLYS 361 (368)
Q Consensus 348 g~Gt~f~i~lP~~~ 361 (368)
+||+|+|+||+..
T Consensus 793 -~Gt~F~i~lP~~~ 805 (807)
T PRK13560 793 -GGARFNIRFPMSP 805 (807)
T ss_pred -CceEEEEEecCCC
Confidence 6999999999854
No 44
>PF10436 BCDHK_Adom3: Mitochondrial branched-chain alpha-ketoacid dehydrogenase kinase; InterPro: IPR018955 Catabolism and synthesis of leucine, isoleucine and valine are finely balanced, allowing the body to make the most of dietary input but removing excesses to prevent toxic build-up of their corresponding keto-acids. Regulating the activity of the branched-chain alpha-ketoacid dehydrogenase (BCDH) complex is the primary means by which these processes are coordinated. BCDH kinase regulates BCDH by phosphorylation, thereby inactivating it when synthesis is required. Pyruvate dehydrogenase kinase inhibits the pyruvate dehydrogenase complex by phosphorylation of the E1 alpha subunit, thus contributing to the regulation of glucose metabolism. It is also involved in telomere maintenance. This entry is associated with IPR003594 from INTERPRO which is found towards the C terminus. ; PDB: 1GKX_A 1GJV_A 1GKZ_A 1JM6_B 3CRL_B 3CRK_B 1Y8O_A 2PNR_A 1Y8P_A 1Y8N_A ....
Probab=99.87 E-value=6.9e-21 Score=157.57 Aligned_cols=159 Identities=47% Similarity=0.853 Sum_probs=141.0
Q ss_pred CCCCHHHHHhcCCCCChHHHHHHHHHHHHHhHHHHHHHHHHHhcCCccccCChhHHHHHHHHHHHHHHhhcCCCCCCchh
Q 017683 27 TGVSLRYMMEFGSKPTDKNLLISAQFLHKELPIRIARRAIELETLPYGLSEKPAVLKVRDWYLDSFRDLRSFPDIRSTSD 106 (368)
Q Consensus 27 ~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~l~~rv~~r~~~l~~~~~~l~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~ 106 (368)
.|+|+++|+.||+++++.+++.+++++++|||.|+|+|+++++.+|+.+..+|++..+++||.++|+++..++.++..++
T Consensus 1 tplSL~~L~~fg~~~~~~~l~~sa~fl~~ELpvRlA~ri~~l~~LP~~l~~~p~i~~V~~~Y~~sF~~L~~~~~~~~~~~ 80 (164)
T PF10436_consen 1 TPLSLKQLLQFGRNPTEETLLQSAQFLRRELPVRLAHRIRELQNLPYILVSNPSIQQVYEWYLQSFEELRSFPPPKTLED 80 (164)
T ss_dssp --EBHHHHHHHHCTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-HHHHTSHHHHHHHHHHHHHHHHHHTTSTTTSCCH
T ss_pred CCcCHHHHHHhCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHhCChhhccChhHHHHHHHHHHHHHHHHhcCCCCCHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHhhccCcccccCChHHHHHHHHHHHHhhHHHHHhHHHHhhhcCCC--C-CCC
Q 017683 107 ERDFTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIGQHVELHNPN--P-PPH 183 (368)
Q Consensus 107 ~~~~~~~l~~~~~~~~~~l~~l~~~~~el~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~li~~ll~l~~~~--~-~~~ 183 (368)
+.+|.+++..+..++.+.+..++.|+.|++..... ....+.++.+||+++.+++++|+|+++++.++... + .++
T Consensus 81 ~~~F~~~l~~i~~~H~~vv~~lA~G~~E~~~~~~~---~~~~~~i~~fLd~f~~sRIgiR~L~~qHlaL~~~~~~~~~~~ 157 (164)
T PF10436_consen 81 NEKFTELLERILDRHSDVVPTLAQGVLELKKYLQS---SESEEQIQSFLDRFYRSRIGIRMLAEQHLALSEQSLNPSKPN 157 (164)
T ss_dssp HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSSSSSSTT
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcc---cccHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCccCCCCCC
Confidence 99999999999999999999999999999988710 01256999999999999999999999999996432 1 255
Q ss_pred ccccc
Q 017683 184 CIGYI 188 (368)
Q Consensus 184 ~~~~~ 188 (368)
++|++
T Consensus 158 ~vG~I 162 (164)
T PF10436_consen 158 YVGII 162 (164)
T ss_dssp SBTTB
T ss_pred eeeee
Confidence 66544
No 45
>COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms]
Probab=99.87 E-value=7.2e-21 Score=178.92 Aligned_cols=204 Identities=20% Similarity=0.220 Sum_probs=148.8
Q ss_pred chhHHHHHHHHHHHHHhccCcHHHHHHHHHHHhhccCcccccCChHHHHHHHHHHHHhhHHHHHhHHHHhhhcCCCCCCC
Q 017683 104 TSDERDFTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIGQHVELHNPNPPPH 183 (368)
Q Consensus 104 ~~~~~~~~~~l~~~~~~~~~~l~~l~~~~~el~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~li~~ll~l~~~~~~~~ 183 (368)
+..-.++.+.++...||+.|.|..+.+.++.= ..+++..++.......+. .++.+..-.+
T Consensus 327 Lt~vr~ya~aLRaq~HEfmNkLhtI~GLlql~-----------~yd~a~~~I~~~~~~qq~---~~~~l~~~i~------ 386 (537)
T COG3290 327 LTGVRQYAEALRAQSHEFMNKLHTILGLLQLG-----------EYDDALDYIQQESEEQQE---LIDSLSEKIK------ 386 (537)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhc-----------cHHHHHHHHHHHHhhhhh---hHHHHHHhcc------
Confidence 34446778888888999999998888766531 134555555543322221 2222221111
Q ss_pred cccccccCCCHHHHHHHHHHHHHHHHHHhhCCCCceEEecCCCc---eeeecchhHHHHHHHHHHHHHHHHHHhhcCCCC
Q 017683 184 CIGYIDTKMSPVQVARNASEHARCVCLREYGSAPDFNIYGDPSF---TFPYVPSHLHLMVFELVKNSLRAVEERYMDSDK 260 (368)
Q Consensus 184 ~~~~~~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~~d~~~l~~vl~NLl~NAi~~~~~~~~~~~~ 260 (368)
.--++.++-.-+..++. . ++.+.++.+..+ +-..++..+-.++.|||+||++++....
T Consensus 387 -------~~~lAg~LlgK~~rArE----l---gv~l~Id~~S~l~~~p~~~~~~~litIlGNLidNA~eA~~~~~----- 447 (537)
T COG3290 387 -------DPVLAGFLLGKISRARE----L---GVSLIIDPNSQLPQLPSELQPHDLVTILGNLIDNALEALLAPE----- 447 (537)
T ss_pred -------cHHHHHHHHhHHHHHHH----c---CceEEEcCCCcCCCCCCccChHHHHHHHHHHHHHHHHHhhccC-----
Confidence 11233333333333332 2 666677655432 3556777899999999999999997311
Q ss_pred CCCCEEEEEEeCCCceEEEEeecCCCCCCCCcccccccccccCCCCCCcccccccCCCCCCccccCHHHHHHHHHHhCCe
Q 017683 261 VAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAADKGTMAGYGYGLPISRLYARYFGGD 340 (368)
Q Consensus 261 ~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~~~~~~~~~~~g~GlGL~i~k~i~~~~gG~ 340 (368)
.+..|.+.+...++.+.|+|.|+||||||+..+++|+..|+++.. .+.|+||++|+++++.+||.
T Consensus 448 ~~k~I~l~i~~~~~~lvieV~D~G~GI~~~~~~~iFe~G~Stk~~---------------~~rGiGL~Lvkq~V~~~~G~ 512 (537)
T COG3290 448 ENKEIELSLSDRGDELVIEVADTGPGIPPEVRDKIFEKGVSTKNT---------------GGRGIGLYLVKQLVERLGGS 512 (537)
T ss_pred CCcEEEEEEEecCCEEEEEEeCCCCCCChHHHHHHHhcCccccCC---------------CCCchhHHHHHHHHHHcCce
Confidence 157899999999999999999999999999999999999999873 49999999999999999999
Q ss_pred EEEEecCCCeeEEEEEEeccc
Q 017683 341 LQIISMEGYGELNMFSVLLYS 361 (368)
Q Consensus 341 i~v~s~~g~Gt~f~i~lP~~~ 361 (368)
|+++|.++.||+|++++|...
T Consensus 513 I~~~s~~~~Gt~F~i~iP~~~ 533 (537)
T COG3290 513 IEVESEKGQGTRFSIYIPKVK 533 (537)
T ss_pred EEEeeCCCCceEEEEECCCCc
Confidence 999999999999999999864
No 46
>PRK11644 sensory histidine kinase UhpB; Provisional
Probab=99.86 E-value=1.8e-20 Score=183.69 Aligned_cols=192 Identities=15% Similarity=0.139 Sum_probs=141.7
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHhhccCcccccCChHHHHHHHHHHHHhhHHHHHhHHHHhhhcCCCCCCCccccccc
Q 017683 111 TQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIGQHVELHNPNPPPHCIGYIDT 190 (368)
Q Consensus 111 ~~~l~~~~~~~~~~l~~l~~~~~el~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~li~~ll~l~~~~~~~~~~~~~~~ 190 (368)
.++.+.+.|++++|++.+....+.++.... ..++..+..+.+.....++...+++++...+.. ..+
T Consensus 303 ~~ia~elhdeI~~pLtaI~~~a~ll~~~~~------~~~~~~~~~~~I~~~~~~l~~~vr~LL~~lr~~--------~l~ 368 (495)
T PRK11644 303 RDVARELHDEIGQTITAIRTQAGIIKRLAA------DNASVKQSAQLIEQLSLGVYDTVRRLLGRLRPR--------QLD 368 (495)
T ss_pred HHHHHHhhhhhhhHHHHHHHHHHHHHhhcc------CChHHHHHHHHHHHHHHHHHHHHHHHHhccCCc--------ccc
Confidence 446677788999999999776655543222 223444555555555566666777777655531 125
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhhCCCCceEEecCCCceeeecchhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEEEE
Q 017683 191 KMSPVQVARNASEHARCVCLREYGSAPDFNIYGDPSFTFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVA 270 (368)
Q Consensus 191 ~~~l~~li~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~d~~~l~~vl~NLl~NAi~~~~~~~~~~~~~~~~I~i~~~ 270 (368)
.+++.+.+++++..+..... +..+.++.+.+.......++..+.+++.|+++||+||++. +.|.|++.
T Consensus 369 ~~~L~~~l~~l~~~l~~~~~---~~~v~l~~~~~~~~l~~~~~~~L~ril~nlL~NAiKha~~---------~~I~I~l~ 436 (495)
T PRK11644 369 DLTLEQAIRSLMREMELEDR---GIVSHLDWRIDESALSETQRVTLFRVCQEGLNNIVKHADA---------SAVTLQGW 436 (495)
T ss_pred cCCHHHHHHHHHHHHHHhhc---CceEEEEecCCcccCChhHHHHHHHHHHHHHHHHHHhCCC---------CEEEEEEE
Confidence 78999999998887653321 1233344334444445566778999999999999999754 67999998
Q ss_pred eCCCceEEEEeecCCCCCCCCcccccccccccCCCCCCcccccccCCCCCCccccCHHHHHHHHHHhCCeEEEEecCCCe
Q 017683 271 DGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAADKGTMAGYGYGLPISRLYARYFGGDLQIISMEGYG 350 (368)
Q Consensus 271 ~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~~~~~~~~~~~g~GlGL~i~k~i~~~~gG~i~v~s~~g~G 350 (368)
.+++.+.++|+|||+|||++. .|.|+||++++++++.|||+++++| +.|
T Consensus 437 ~~~~~i~l~V~DnG~Gi~~~~-----------------------------~~~GLGL~ivr~iv~~~GG~i~v~S--~~G 485 (495)
T PRK11644 437 QQDERLMLVIEDDGSGLPPGS-----------------------------GQQGFGLRGMRERVTALGGTLTISC--THG 485 (495)
T ss_pred EcCCEEEEEEEECCCCCCcCC-----------------------------CCCCCcHHHHHHHHHHcCCEEEEEc--CCC
Confidence 888899999999999999762 2789999999999999999999999 779
Q ss_pred eEEEEEEec
Q 017683 351 ELNMFSVLL 359 (368)
Q Consensus 351 t~f~i~lP~ 359 (368)
|+|++.+|.
T Consensus 486 t~f~I~LP~ 494 (495)
T PRK11644 486 TRLSVSLPQ 494 (495)
T ss_pred EEEEEEEeC
Confidence 999999996
No 47
>PRK13559 hypothetical protein; Provisional
Probab=99.81 E-value=1.7e-18 Score=163.74 Aligned_cols=188 Identities=14% Similarity=0.107 Sum_probs=135.5
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHhhccCcccccCChHHHHHHHHHHHHhhHHHHHhHHHHhhhcCCCCCCCccccc
Q 017683 109 DFTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIGQHVELHNPNPPPHCIGYI 188 (368)
Q Consensus 109 ~~~~~l~~~~~~~~~~l~~l~~~~~el~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~li~~ll~l~~~~~~~~~~~~~ 188 (368)
+..+++..+.|+++++|..+.+.+..+.. . .+...+++.+.....++..+++.+++..+.
T Consensus 169 ~~~~l~~~l~H~~~n~L~~i~~~~~l~~~--~--------~~~~~~~~~i~~~~~~l~~~~~~ll~~~~~---------- 228 (361)
T PRK13559 169 HERRLAREVDHRSKNVFAVVDSIVRLTGR--A--------DDPSLYAAAIQERVQALARAHETLLDERGW---------- 228 (361)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHhhcc--C--------CCHHHHHHHHHHHHHHHHHHHHHHhccCCc----------
Confidence 34568888999999999988776654431 1 123344555545555566667777655442
Q ss_pred ccCCCHHHHHHHHHHHHHHHHHHhhCCCCceEEecCCCceeeec-chhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEE
Q 017683 189 DTKMSPVQVARNASEHARCVCLREYGSAPDFNIYGDPSFTFPYV-PSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRI 267 (368)
Q Consensus 189 ~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~d-~~~l~~vl~NLl~NAi~~~~~~~~~~~~~~~~I~i 267 (368)
.++++.++++.++..+... ...+.+..+ ++.+..+ ...|.+||.||+.||+||.... ..++.|.|
T Consensus 229 -~~v~l~~~~~~~~~~~~~~-------~~~i~~~~~-~~~~~~~~~~~l~~vl~nLi~NA~k~~~~~-----~~~g~i~v 294 (361)
T PRK13559 229 -ETVEVEELIRAQVAPYAPR-------ATRVAFEGP-GIRLGAASVQPLGLVLHELAVNAIKHGALS-----ADQGRISI 294 (361)
T ss_pred -CcccHHHHHHHHHHhhcCC-------CceEEEECC-CeeeCHHHHHHHHHHHHHHHHhHHHhcccc-----CCCcEEEE
Confidence 6789999998887765421 335555532 3344333 3469999999999999994210 01588999
Q ss_pred EE--EeCCCceEEEEeecCCCCCCCCcccccccccccCCCCCCcccccccCCCCCCccccCHHHHHHHHHH-hCCeEEEE
Q 017683 268 IV--ADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAADKGTMAGYGYGLPISRLYARY-FGGDLQII 344 (368)
Q Consensus 268 ~~--~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~~~~~~~~~~~g~GlGL~i~k~i~~~-~gG~i~v~ 344 (368)
.+ ...++.+.+.|.|+|+|++++. .|+|+||.+|+.+++. |||++++.
T Consensus 295 ~~~~~~~~~~~~i~v~d~G~~~~~~~-----------------------------~~~g~Gl~i~~~~v~~~~gG~i~~~ 345 (361)
T PRK13559 295 SWKPSPEGAGFRIDWQEQGGPTPPKL-----------------------------AKRGFGTVIIGAMVESQLNGQLEKT 345 (361)
T ss_pred EEEecCCCCeEEEEEECCCCCCCCCC-----------------------------CCCCcHHHHHHHHHHHHcCCeEEEE
Confidence 98 6677889999999999977651 3889999999999986 99999999
Q ss_pred ecCCCeeEEEEEEecc
Q 017683 345 SMEGYGELNMFSVLLY 360 (368)
Q Consensus 345 s~~g~Gt~f~i~lP~~ 360 (368)
+. +.||+|+|+||+.
T Consensus 346 ~~-~~G~~~~l~~P~~ 360 (361)
T PRK13559 346 WS-DDGLLARIEIPSR 360 (361)
T ss_pred Ec-CCeEEEEEEEeCC
Confidence 87 5699999999975
No 48
>PRK10547 chemotaxis protein CheA; Provisional
Probab=99.79 E-value=1.4e-17 Score=165.80 Aligned_cols=155 Identities=21% Similarity=0.267 Sum_probs=119.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHhhCCCCceEEecCCCceeeecchhHHHH---HHHHHHHHHHHHHHh----hcCCCCCCCC
Q 017683 192 MSPVQVARNASEHARCVCLREYGSAPDFNIYGDPSFTFPYVPSHLHLM---VFELVKNSLRAVEER----YMDSDKVAPP 264 (368)
Q Consensus 192 ~~l~~li~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~d~~~l~~v---l~NLl~NAi~~~~~~----~~~~~~~~~~ 264 (368)
+.+..+.......++..+... ++.+.+.+.+. .+..|+..+.++ |.||+.||++|..+. ....+...|.
T Consensus 343 ~p~~~~~~~~~rlvrdla~~~-gk~v~l~~~g~---~~~lD~~~l~~l~dpL~hLirNAidHgie~p~~R~~~gkp~~G~ 418 (670)
T PRK10547 343 MPMEYVFSRFPRLVRDLAGKL-GKQVELTLVGS---STELDKSLIERIIDPLTHLVRNSLDHGIELPEKRLAAGKNSVGN 418 (670)
T ss_pred ccHHHHHHHHHHHHHHHHHHc-CCcEEEEEeCC---ceecCHHHHHHHHHHHHHHHHHHHHhhccchhhHHhcCCCCCCc
Confidence 345666666666666665544 44555555543 356789888888 679999999997431 1112223578
Q ss_pred EEEEEEeCCCceEEEEeecCCCCCCCCc---------------------ccccccccccCCCCCCcccccccCCCCCCcc
Q 017683 265 IRIIVADGLEDVTIKVSDEGGGIPRSGL---------------------PKIFTYLYSTARNPLDENTDLAADKGTMAGY 323 (368)
Q Consensus 265 I~i~~~~~~~~~~i~V~D~G~Gi~~~~~---------------------~~if~~f~~~~~~~~~~~~~~~~~~~~~~g~ 323 (368)
|.|.+...++.+.|.|+|+|.||+++.+ ..||.|||+++.. .+..+|.
T Consensus 419 I~l~a~~~~~~v~I~V~DdG~GId~e~i~~~a~~~Gl~~~~~ls~~e~~~lIF~pgfst~~~-----------~~~~sGr 487 (670)
T PRK10547 419 LILSAEHQGGNICIEVTDDGAGLNRERILAKAASQGLAVSENMSDEEVGMLIFAPGFSTAEQ-----------VTDVSGR 487 (670)
T ss_pred eEEEEEEcCCEEEEEEEeCCCCCCHHHHHHHHHHcCCCccccCCHHHHHHHhhcCCcccccc-----------cccCCCC
Confidence 9999999999999999999999998644 3699999888754 2345799
Q ss_pred ccCHHHHHHHHHHhCCeEEEEecCCCeeEEEEEEeccc
Q 017683 324 GYGLPISRLYARYFGGDLQIISMEGYGELNMFSVLLYS 361 (368)
Q Consensus 324 GlGL~i~k~i~~~~gG~i~v~s~~g~Gt~f~i~lP~~~ 361 (368)
|+||.+||.+++.|||+|++.|.+|+||+|+|.||+..
T Consensus 488 GvGL~iVk~~ve~lgG~I~v~S~~g~Gt~f~i~LPltl 525 (670)
T PRK10547 488 GVGMDVVKRNIQEMGGHVEIQSKQGKGTTIRILLPLTL 525 (670)
T ss_pred chhHHHHHHHHHHcCCEEEEEecCCCcEEEEEEEechh
Confidence 99999999999999999999999999999999999864
No 49
>PRK10600 nitrate/nitrite sensor protein NarX; Provisional
Probab=99.79 E-value=1.3e-17 Score=167.11 Aligned_cols=161 Identities=17% Similarity=0.185 Sum_probs=120.3
Q ss_pred HHHHHHHHHHHHhhHHHHHhHHHHhhhcCCCCCCCcccccccCCCHHHHHHHHHHHHHHHHHHhhCCCCceEEecC--CC
Q 017683 149 DEIHQFLDRFYMSRIGIRMLIGQHVELHNPNPPPHCIGYIDTKMSPVQVARNASEHARCVCLREYGSAPDFNIYGD--PS 226 (368)
Q Consensus 149 ~~~~~~l~~~~~~~~~~~~li~~ll~l~~~~~~~~~~~~~~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~~~~~--~~ 226 (368)
+...+.+..+......+...+.+++...+.. ....++.+.++.++..+.... ...+.+..+ ..
T Consensus 396 ~~~~~~l~~i~~~~~~~~~~lr~ll~~~r~~---------~~~~~l~~~l~~~~~~~~~~~------~~~i~~~~~~~~~ 460 (569)
T PRK10600 396 ESSRELLSQIRNELNASWRQLRELLTTFRLQ---------LTEPGLRPALEASCEEFSARF------GFPVKLDYQLPPR 460 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCcC---------cccCCHHHHHHHHHHHHHHHh------CCeEEEEecCCcc
Confidence 4555666665555555555677777766642 146788888888888765432 223444322 22
Q ss_pred ceeeecchhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEEEEeCCCceEEEEeecCCCCCCCCcccccccccccCCCC
Q 017683 227 FTFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNP 306 (368)
Q Consensus 227 ~~~~~d~~~l~~vl~NLl~NAi~~~~~~~~~~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~ 306 (368)
.....++..+.+++.|++.||+||++. +.|.|.+...++.+.+.|.|+|+|||++. .
T Consensus 461 ~~~~~~~~~l~~il~ell~NA~kha~a---------~~i~V~~~~~~~~~~l~V~D~G~Gi~~~~------------~-- 517 (569)
T PRK10600 461 LVPSHQAIHLLQIAREALSNALKHAQA---------SEVVVTVAQNQNQVKLSVQDNGCGVPENA------------E-- 517 (569)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHhCCC---------CeEEEEEEEcCCEEEEEEEECCCCCCccc------------c--
Confidence 212223456999999999999999753 67999988888999999999999999863 1
Q ss_pred CCcccccccCCCCCCccccCHHHHHHHHHHhCCeEEEEecCCCeeEEEEEEeccc
Q 017683 307 LDENTDLAADKGTMAGYGYGLPISRLYARYFGGDLQIISMEGYGELNMFSVLLYS 361 (368)
Q Consensus 307 ~~~~~~~~~~~~~~~g~GlGL~i~k~i~~~~gG~i~v~s~~g~Gt~f~i~lP~~~ 361 (368)
.+.|+||++|+.+++.|||++++.|.+|+||+|+|.||...
T Consensus 518 --------------~~~glGL~i~~~~~~~lgG~l~i~s~~~~Gt~v~i~lp~~~ 558 (569)
T PRK10600 518 --------------RSNHYGLIIMRDRAQSLRGDCRVRRRESGGTEVVVTFIPEK 558 (569)
T ss_pred --------------CCCCccHHHHHHHHHHcCCEEEEEECCCCCEEEEEEEecCC
Confidence 26799999999999999999999999999999999999854
No 50
>PRK10935 nitrate/nitrite sensor protein NarQ; Provisional
Probab=99.78 E-value=1.7e-17 Score=166.15 Aligned_cols=190 Identities=16% Similarity=0.140 Sum_probs=128.3
Q ss_pred HHHHHhccCcHHHHHHHHH----HHhhccCcccccCChHHHHHHHHHHHHhhHHHHHhHHHHhhhcCCCCCCCccccccc
Q 017683 115 KAIKVRHNNVVPMMALGLQ----QLKKEMDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIGQHVELHNPNPPPHCIGYIDT 190 (368)
Q Consensus 115 ~~~~~~~~~~l~~l~~~~~----el~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~li~~ll~l~~~~~~~~~~~~~~~ 190 (368)
..+.|++++++..+...+. .+...+. ...+.....+..+..........+.+++...+. ...
T Consensus 365 ~~la~el~~~l~~~l~~~~~~~~~l~~~~~-----~~~~~~~~~l~~~~~~~~~~~~~l~~l~~~~~~---------~~~ 430 (565)
T PRK10935 365 ATIARELHDSLAQVLSYLKIQLTLLKRSLD-----EDNAKAQSIIAEFDQALSDAYRQLRELLTTFRL---------TIQ 430 (565)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHHhcc-----cChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC---------CCC
Confidence 3466666677665544432 2332222 223344444444333333333344444444333 125
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhhCCCCceEEe--cCCCceeeecchhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEE
Q 017683 191 KMSPVQVARNASEHARCVCLREYGSAPDFNIY--GDPSFTFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRII 268 (368)
Q Consensus 191 ~~~l~~li~~~~~~~~~~~~~~~~~~~~i~~~--~~~~~~~~~d~~~l~~vl~NLl~NAi~~~~~~~~~~~~~~~~I~i~ 268 (368)
++++.+.+..++..+.... ...+.+. .+.......++..+.+++.|++.||++|++. +.|.|.
T Consensus 431 ~~~l~~~l~~~~~~~~~~~------~~~i~~~~~~~~~~~~~~~~~~l~qv~~nll~NA~k~~~~---------~~i~i~ 495 (565)
T PRK10935 431 EANLGSALEEMLDQLRNQT------DAKITLDCRLPSQALDAQQQVHLLQIIREATLNAIKHANA---------SEIAVS 495 (565)
T ss_pred CCCHHHHHHHHHHHHHHhh------CCeEEEEeeCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCC---------CeEEEE
Confidence 7899999999988776431 2234443 2222333344556999999999999999643 678888
Q ss_pred EEeC-CCceEEEEeecCCCCCCCCcccccccccccCCCCCCcccccccCCCCCCccccCHHHHHHHHHHhCCeEEEEecC
Q 017683 269 VADG-LEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAADKGTMAGYGYGLPISRLYARYFGGDLQIISME 347 (368)
Q Consensus 269 ~~~~-~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~~~~~~~~~~~g~GlGL~i~k~i~~~~gG~i~v~s~~ 347 (368)
+... ++.+.++|.|+|+|||++. ..|+|+||++|+.+++.|||.|++.|.+
T Consensus 496 ~~~~~~~~~~i~V~D~G~Gi~~~~----------------------------~~~~glGL~i~~~iv~~~~G~i~v~s~~ 547 (565)
T PRK10935 496 CVTNPDGEHTVSIRDDGIGIGELK----------------------------EPEGHYGLNIMQERAERLGGTLTISQPP 547 (565)
T ss_pred EEEcCCCEEEEEEEECCcCcCCCC----------------------------CCCCCcCHHHHHHHHHHcCCEEEEEECC
Confidence 8766 6789999999999999742 1378999999999999999999999999
Q ss_pred CCeeEEEEEEeccc
Q 017683 348 GYGELNMFSVLLYS 361 (368)
Q Consensus 348 g~Gt~f~i~lP~~~ 361 (368)
|+||+|+|.||...
T Consensus 548 ~~Gt~~~i~lP~~~ 561 (565)
T PRK10935 548 GGGTTVSLTFPSQQ 561 (565)
T ss_pred CCcEEEEEEECCCC
Confidence 99999999999864
No 51
>COG0643 CheA Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms]
Probab=99.69 E-value=3.1e-16 Score=156.81 Aligned_cols=154 Identities=24% Similarity=0.281 Sum_probs=122.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHhhCCCCceEEecCCCceeeecch---hHHHHHHHHHHHHHHHHHH----hhcCCCCCCCC
Q 017683 192 MSPVQVARNASEHARCVCLREYGSAPDFNIYGDPSFTFPYVPS---HLHLMVFELVKNSLRAVEE----RYMDSDKVAPP 264 (368)
Q Consensus 192 ~~l~~li~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~d~~---~l~~vl~NLl~NAi~~~~~----~~~~~~~~~~~ 264 (368)
+-+..+....-..++.+... +++.+++.+.+.... .|+. +|.-=|..|+.||+.|..+ +....|...|+
T Consensus 390 vP~~~vf~RfpR~VRdla~~-lgK~V~L~ieG~~te---lDksIlE~l~dPL~HLvRNAvDHGIE~pE~R~a~GKp~~G~ 465 (716)
T COG0643 390 VPFEQVFSRFPRMVRDLARK-LGKQVELVIEGEDTE---LDKSILERLGDPLTHLVRNAVDHGIETPEERRAAGKPEEGT 465 (716)
T ss_pred eeHHHHHhhccHHHHHHHHH-hCCeeEEEEecCCee---ehHHHHHHhcccHHHHHhcchhccCCCHHHHHHcCCCCcce
Confidence 34556666666666666544 477888888765432 3333 3444578889999998733 44455666799
Q ss_pred EEEEEEeCCCceEEEEeecCCCCCC------------------------CCcccccccccccCCCCCCcccccccCCCCC
Q 017683 265 IRIIVADGLEDVTIKVSDEGGGIPR------------------------SGLPKIFTYLYSTARNPLDENTDLAADKGTM 320 (368)
Q Consensus 265 I~i~~~~~~~~~~i~V~D~G~Gi~~------------------------~~~~~if~~f~~~~~~~~~~~~~~~~~~~~~ 320 (368)
|.++....++.+.|.|+|+|.||++ +...-||.|.|+|+.. .+..
T Consensus 466 I~L~A~~~gn~ivIev~DDG~Gid~ekI~~KAiErGli~~~~a~~lSd~Ei~~LIF~PGFSTa~~-----------Vtdv 534 (716)
T COG0643 466 ITLSAYHEGNNIVIEVSDDGAGIDREKIREKAIERGLITEEEAETLSDEEILNLIFAPGFSTAEQ-----------VTDV 534 (716)
T ss_pred EEEEEEcCCCeEEEEEeeCCCCCCHHHHHHHHHHcCCCChHHhccCCHHHHHHHHhcCCCCcchh-----------hhcc
Confidence 9999999999999999999999965 2345689999999876 6778
Q ss_pred CccccCHHHHHHHHHHhCCeEEEEecCCCeeEEEEEEecc
Q 017683 321 AGYGYGLPISRLYARYFGGDLQIISMEGYGELNMFSVLLY 360 (368)
Q Consensus 321 ~g~GlGL~i~k~i~~~~gG~i~v~s~~g~Gt~f~i~lP~~ 360 (368)
+|.|.||-+||.-++.+||.|+|+|.+|+||+|+|.||+.
T Consensus 535 SGRGVGMDVVk~~I~~LgG~I~V~S~~G~GT~Fti~LPLT 574 (716)
T COG0643 535 SGRGVGMDVVKTNIEQLGGSISVSSEPGKGTTFTIRLPLT 574 (716)
T ss_pred cCCccCHHHHHHHHHHcCCEEEEEecCCCCeEEEEecCcH
Confidence 8999999999999999999999999999999999999985
No 52
>smart00387 HATPase_c Histidine kinase-like ATPases. Histidine kinase-, DNA gyrase B-, phytochrome-like ATPases.
Probab=99.62 E-value=2.8e-15 Score=115.94 Aligned_cols=110 Identities=26% Similarity=0.445 Sum_probs=95.9
Q ss_pred ecchhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEEEEeCCCceEEEEeecCCCCCCCCcccccccccccCCCCCCcc
Q 017683 231 YVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDEN 310 (368)
Q Consensus 231 ~d~~~l~~vl~NLl~NAi~~~~~~~~~~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~ 310 (368)
+|+..|.+++.|++.||++|... .+.|.|.+...++.+.+.|.|+|.|++++..+++|.++++.+..
T Consensus 1 ~~~~~l~~~~~~l~~n~~~~~~~--------~~~v~i~~~~~~~~~~i~i~d~g~g~~~~~~~~~~~~~~~~~~~----- 67 (111)
T smart00387 1 GDPDRLRQVLSNLLDNAIKYTPE--------GGRITVTLERDGDHLEITVEDNGPGIPPEDLEKIFEPFFRTDGR----- 67 (111)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCC--------CCeEEEEEEEcCCEEEEEEEeCCCCCCHHHHHHHhcCeEECCCC-----
Confidence 35678999999999999999865 47899999988889999999999999999999999998876521
Q ss_pred cccccCCCCCCccccCHHHHHHHHHHhCCeEEEEecCCCeeEEEEEEec
Q 017683 311 TDLAADKGTMAGYGYGLPISRLYARYFGGDLQIISMEGYGELNMFSVLL 359 (368)
Q Consensus 311 ~~~~~~~~~~~g~GlGL~i~k~i~~~~gG~i~v~s~~g~Gt~f~i~lP~ 359 (368)
.....+.|+||++|+.+++.|+|++.+.+.++.|++|++.+|+
T Consensus 68 ------~~~~~~~g~gl~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~ 110 (111)
T smart00387 68 ------SRKIGGTGLGLSIVKKLVELHGGEISVESEPGGGTTFTITLPL 110 (111)
T ss_pred ------CCCCCcccccHHHHHHHHHHcCCEEEEEecCCCcEEEEEEeeC
Confidence 1223578999999999999999999999887889999999996
No 53
>PRK04184 DNA topoisomerase VI subunit B; Validated
Probab=99.62 E-value=2e-15 Score=145.55 Aligned_cols=115 Identities=30% Similarity=0.465 Sum_probs=90.9
Q ss_pred ecchhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEEEEe---CCCceEEEEeecCCCCCCCCcccccccccccCCCCC
Q 017683 231 YVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVAD---GLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPL 307 (368)
Q Consensus 231 ~d~~~l~~vl~NLl~NAi~~~~~~~~~~~~~~~~I~i~~~~---~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~ 307 (368)
+++..|.+++.||++||++|+.... ..+.|.|.+.. +++.+.|.|.|||+||+++.++++|.+|+.+....
T Consensus 32 ~p~~~L~qVLkNLIeNAIDa~~~~g-----ilp~I~I~I~~~~~~~~~~~I~V~DNG~GIp~e~l~~iF~~f~~~SK~~- 105 (535)
T PRK04184 32 NPARALYTTVKELVDNSLDACEEAG-----ILPDIKIEIKRVDEGKDHYRVTVEDNGPGIPPEEIPKVFGKLLYGSKFH- 105 (535)
T ss_pred CCHHHHHHHHHHHHHHHHHHhhhcC-----CCceEEEEEEEccCCCcEEEEEEEcCCCCCCHHHHHHHhhhhhcccccc-
Confidence 3456799999999999999997620 01368888764 45678999999999999999999999986553320
Q ss_pred CcccccccC-CCCCCccccCHHHHHHHHHHhCCe-EEEEecCCCee-EEEEEEec
Q 017683 308 DENTDLAAD-KGTMAGYGYGLPISRLYARYFGGD-LQIISMEGYGE-LNMFSVLL 359 (368)
Q Consensus 308 ~~~~~~~~~-~~~~~g~GlGL~i~k~i~~~~gG~-i~v~s~~g~Gt-~f~i~lP~ 359 (368)
. ....+++|+||++|+.+++.|+|. +++.|.+++|+ .|++.||+
T Consensus 106 --------~~~~s~G~~GLGLsiv~~isq~~~G~~I~V~S~~~~g~~~~~~~l~i 152 (535)
T PRK04184 106 --------NLRQSRGQQGIGISAAVLYAQMTTGKPVRVISSTGGSKKAYYFELKI 152 (535)
T ss_pred --------ccccCCCCCCcchHHHHHHHHHhcCCcEEEEEecCCCceEEEEEEEe
Confidence 0 122457999999999999999997 99999988887 78888874
No 54
>COG4585 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=99.51 E-value=7.6e-13 Score=125.38 Aligned_cols=89 Identities=26% Similarity=0.390 Sum_probs=81.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEEEEeCCCceEEEEeecCCCCCCCCcccccccccccCCCCCCcccc
Q 017683 233 PSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTD 312 (368)
Q Consensus 233 ~~~l~~vl~NLl~NAi~~~~~~~~~~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~~ 312 (368)
...+.+++.+.+.||+||+.. ..+.|.+...++.+.++|.|||.|++++.
T Consensus 277 e~~l~rivQEaltN~~rHa~A---------~~v~V~l~~~~~~l~l~V~DnG~Gf~~~~--------------------- 326 (365)
T COG4585 277 EDALFRIVQEALTNAIRHAQA---------TEVRVTLERTDDELRLEVIDNGVGFDPDK--------------------- 326 (365)
T ss_pred HHHHHHHHHHHHHHHHhccCC---------ceEEEEEEEcCCEEEEEEEECCcCCCccc---------------------
Confidence 557999999999999999875 78999999999999999999999999873
Q ss_pred cccCCCCCCccccCHHHHHHHHHHhCCeEEEEecCCCeeEEEEEEec
Q 017683 313 LAADKGTMAGYGYGLPISRLYARYFGGDLQIISMEGYGELNMFSVLL 359 (368)
Q Consensus 313 ~~~~~~~~~g~GlGL~i~k~i~~~~gG~i~v~s~~g~Gt~f~i~lP~ 359 (368)
.+.|+||.-.|+-++..||++++.|.+|.||++++.+|+
T Consensus 327 --------~~~~~GL~~mreRv~~lgG~l~i~S~~g~Gt~i~i~lPl 365 (365)
T COG4585 327 --------EGGGFGLLGMRERVEALGGTLTIDSAPGQGTTVTITLPL 365 (365)
T ss_pred --------cCCCcchhhHHHHHHHcCCEEEEEecCCCceEEEEecCC
Confidence 126899999999999999999999999999999999995
No 55
>TIGR01925 spIIAB anti-sigma F factor. This model describes the SpoIIAB anti-sigma F factor. Sigma F regulates spore development in B subtilis. SpoIIAB binds to sigma F, preventing formation of the transcription complex at the promoter. SpoIIAA (anti-anti-sigma F factor) binds to SpoIIAB to inhibit association with sigma F, however SpoIIAB can phosphorylate SpoIIAA, causing disassociation of the SpoIIAA/B complex. The SpoIIE phosphatase dephosphorylates SpoIIAA.
Probab=99.51 E-value=1.3e-13 Score=111.94 Aligned_cols=100 Identities=23% Similarity=0.248 Sum_probs=81.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEEEEeCCCceEEEEeecCCCCCCCCcccccccccccCCCCCCcccc
Q 017683 233 PSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTD 312 (368)
Q Consensus 233 ~~~l~~vl~NLl~NAi~~~~~~~~~~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~~ 312 (368)
...+..++.|++.||++|.... ..++.|.|.+...++.+.+.|.|+|+|||+ .+++|++||+.+..
T Consensus 37 ~~~l~~~l~eli~Nai~h~~~~-----~~~~~I~v~~~~~~~~~~i~I~D~G~gi~~--~~~~~~~~~~~~~~------- 102 (137)
T TIGR01925 37 LTDIKTAVSEAVTNAIIHGYEE-----NCEGVVYISATIEDHEVYITVRDEGIGIEN--LEEAREPLYTSKPE------- 102 (137)
T ss_pred HHHHHHHHHHHHHHHHHhccCC-----CCCcEEEEEEEEeCCEEEEEEEEcCCCcCc--hhHhhCCCcccCCC-------
Confidence 3468999999999999985320 014679999988888999999999999984 67899999976544
Q ss_pred cccCCCCCCccccCHHHHHHHHHHhCCeEEEEecCCCeeEEEEEE
Q 017683 313 LAADKGTMAGYGYGLPISRLYARYFGGDLQIISMEGYGELNMFSV 357 (368)
Q Consensus 313 ~~~~~~~~~g~GlGL~i~k~i~~~~gG~i~v~s~~g~Gt~f~i~l 357 (368)
..+.|+||+++++ +.+++++++.++.||+|+++.
T Consensus 103 -------~~~~GlGL~lv~~----~~~~l~~~~~~~~Gt~v~i~~ 136 (137)
T TIGR01925 103 -------LERSGMGFTVMEN----FMDDVSVDSEKEKGTKIIMKK 136 (137)
T ss_pred -------CCCCcccHHHHHH----hCCcEEEEECCCCCeEEEEEe
Confidence 3589999998876 557999999999999998863
No 56
>COG3850 NarQ Signal transduction histidine kinase, nitrate/nitrite-specific [Signal transduction mechanisms]
Probab=99.50 E-value=3.4e-12 Score=119.98 Aligned_cols=191 Identities=17% Similarity=0.188 Sum_probs=124.4
Q ss_pred HHHHHHh-ccCcHHHHHHHHHHHhhccCcccccCChHHHHHHHHHHHHhhHHHHHhHHHHhhhcCCCCCCCcccccccCC
Q 017683 114 IKAIKVR-HNNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIGQHVELHNPNPPPHCIGYIDTKM 192 (368)
Q Consensus 114 l~~~~~~-~~~~l~~l~~~~~el~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~li~~ll~l~~~~~~~~~~~~~~~~~ 192 (368)
++...|| +-..|+++..-+..|++...+ ...+...+.+..+..+....=.=+..++.-.|..- ..-
T Consensus 376 IAReLHDSiAQsLS~LkiQvt~L~~~~~~----~~~e~s~~~i~~~r~~Ln~~Y~QLRELLtTFRltL---------~e~ 442 (574)
T COG3850 376 IARELHDSIAQSLSFLKIQVTLLKTAIPE----ELPEKAREIIAQIRQGLNDAYRQLRELLTTFRLTL---------QEA 442 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCc----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---------ccC
Confidence 3444443 455666666666666665551 33344444444332222221111233333344321 334
Q ss_pred CHHHHHHHHHHHHHHHHHHhhCCCCceEEecCCCc-eeeec-chhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEEEE
Q 017683 193 SPVQVARNASEHARCVCLREYGSAPDFNIYGDPSF-TFPYV-PSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVA 270 (368)
Q Consensus 193 ~l~~li~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~d-~~~l~~vl~NLl~NAi~~~~~~~~~~~~~~~~I~i~~~ 270 (368)
++..-++++++.+... .++.+++++..+. .++.+ ..++-+|+.+-++||+||+.. ..|.|++.
T Consensus 443 ~L~~AL~~~~~~f~~q------tg~~~~l~~qlp~~~lpa~qqvHlLqIvREAlsNa~KHa~A---------s~i~V~~~ 507 (574)
T COG3850 443 ELPPALEQMLAEFSNQ------TGITVTLDYQLPPRALPAHQQVHLLQIVREALSNAIKHAQA---------SEIKVTVS 507 (574)
T ss_pred chHHHHHHHHHHHHhc------cCCeEEEeccCCCCCCCHHHHHHHHHHHHHHHHHHHHhccc---------CeEEEEEE
Confidence 5666666666665442 2445555533221 22222 237899999999999999865 88999999
Q ss_pred eCCCceEEEEeecCCCCCCCCcccccccccccCCCCCCcccccccCCCCCCccccCHHHHHHHHHHhCCeEEEEecCCCe
Q 017683 271 DGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAADKGTMAGYGYGLPISRLYARYFGGDLQIISMEGYG 350 (368)
Q Consensus 271 ~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~~~~~~~~~~~g~GlGL~i~k~i~~~~gG~i~v~s~~g~G 350 (368)
..++.+.+.|.|||+|||+.. . .+| -+||.|++.-++.+||.+.+++.+|+|
T Consensus 508 ~~~g~~~~~VeDnG~Gi~~~~-----------e----------------~~g-HyGL~IM~ERA~~L~~~L~i~~~~~gG 559 (574)
T COG3850 508 QNDGQVTLTVEDNGVGIDEAA-----------E----------------PSG-HYGLNIMRERAQRLGGQLRIRRREGGG 559 (574)
T ss_pred ecCCeEEEEEeeCCcCCCCcc-----------C----------------CCC-CcchHHHHHHHHHhcCeEEEeecCCCC
Confidence 888999999999999999973 1 124 789999999999999999999999999
Q ss_pred eEEEEEEecc
Q 017683 351 ELNMFSVLLY 360 (368)
Q Consensus 351 t~f~i~lP~~ 360 (368)
|.+.++||-.
T Consensus 560 T~V~ltf~~~ 569 (574)
T COG3850 560 TEVSLTFPPE 569 (574)
T ss_pred eEEEEEeccc
Confidence 9999999843
No 57
>cd00075 HATPase_c Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins
Probab=99.49 E-value=1.7e-13 Score=104.16 Aligned_cols=103 Identities=27% Similarity=0.467 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEEEEeCCCceEEEEeecCCCCCCCCcccccccccccCCCCCCccccccc
Q 017683 236 LHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAA 315 (368)
Q Consensus 236 l~~vl~NLl~NAi~~~~~~~~~~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~~~~~ 315 (368)
|.+++.+++.||++|.... ++.|.|.+...++.+.+.|.|+|.|+++...+..|.++.....
T Consensus 1 l~~~~~~ll~Na~~~~~~~-------~~~v~i~~~~~~~~~~v~i~d~g~g~~~~~~~~~~~~~~~~~~----------- 62 (103)
T cd00075 1 LQQVLLNLLSNAIKHTPEG-------GGRITISVERDGDHLEIRVEDNGPGIPEEDLERIFERFSDGSR----------- 62 (103)
T ss_pred CHHHHHHHHHHHHHhCcCC-------CCeEEEEEEecCCEEEEEEEeCCCCCCHHHHHHHhhhhhcCCC-----------
Confidence 4678999999999997631 3678998888888999999999999999999999887611111
Q ss_pred CCCCCCccccCHHHHHHHHHHhCCeEEEEecCCCeeEEEEEE
Q 017683 316 DKGTMAGYGYGLPISRLYARYFGGDLQIISMEGYGELNMFSV 357 (368)
Q Consensus 316 ~~~~~~g~GlGL~i~k~i~~~~gG~i~v~s~~g~Gt~f~i~l 357 (368)
.....+.|+||++++.+++.|||.+++.+..+.|+.|++.+
T Consensus 63 -~~~~~~~g~gl~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~ 103 (103)
T cd00075 63 -SRKGGGTGLGLSIVKKLVELHGGRIEVESEPGGGTTFTITL 103 (103)
T ss_pred -CCCCCccccCHHHHHHHHHHcCCEEEEEeCCCCcEEEEEEC
Confidence 12245899999999999999999999999887799998764
No 58
>COG3920 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=99.48 E-value=1.3e-11 Score=107.58 Aligned_cols=194 Identities=20% Similarity=0.202 Sum_probs=135.1
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHhhccCcccccCChHHHHHHHHHHHHhhHHHHHhHHHHhhhcCCCCCCCcccccccC
Q 017683 112 QMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIGQHVELHNPNPPPHCIGYIDTK 191 (368)
Q Consensus 112 ~~l~~~~~~~~~~l~~l~~~~~el~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~li~~ll~l~~~~~~~~~~~~~~~~ 191 (368)
-++..+.|..+|.|..+.+.+..-..... .+ ..+++..... +...-.++.+.+.-+ . ...
T Consensus 21 ~ll~Ei~HRVKNnLqiIsSll~lq~r~~~-------~~-~~~~~~~~~~-Ri~sla~~He~L~~s-~----------~~~ 80 (221)
T COG3920 21 LLLREIHHRVKNNLQIISSLLRLQARKFE-------DE-VLEALRESQN-RIQSLALIHELLYKS-G----------DDT 80 (221)
T ss_pred HHHHHhhhhhhhHHHHHHHHHHHHHhhcC-------CH-HHHHHHHHHH-HHHHHHHHHHHHhcC-C----------cce
Confidence 37788899999999988887744333332 11 4444443221 111112444444433 1 157
Q ss_pred CCHHHHHHHHHHHHHHHHHHhhCCCCceEEecCCCceeeecc-hhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEEEE
Q 017683 192 MSPVQVARNASEHARCVCLREYGSAPDFNIYGDPSFTFPYVP-SHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVA 270 (368)
Q Consensus 192 ~~l~~li~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~d~-~~l~~vl~NLl~NAi~~~~~~~~~~~~~~~~I~i~~~ 270 (368)
++...+++.+...+...+ ....+.+....++++.+..|. ..|..|+.+|+.||+||.... ...|.|.|.+.
T Consensus 81 ~~~~~~~~~L~~~l~~~~---~~~~~~~~~~~~~~~~l~~d~A~~Lgliv~EL~tNa~Khaf~~-----~~~G~I~I~~~ 152 (221)
T COG3920 81 WDFASYLELLASNLFPSY---GGKDIRLILDSGPNVFLDPDTAVPLGLIVHELVTNALKHAFLS-----RPGGEIRITLS 152 (221)
T ss_pred EcHHHHHHHHHHHHHHhc---CCCCceEEEecCCceEECchhhHHHHHHHHHHHHHHHHhcCCC-----CCCCEEEEEEE
Confidence 788888888888877654 123455666655555555553 359999999999999998652 11589999998
Q ss_pred eCCCc--eEEEEeecCCCCCCCCcccccccccccCCCCCCcccccccCCCCCCccccCHHHHHHHH-HHhCCeEEEEecC
Q 017683 271 DGLED--VTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAADKGTMAGYGYGLPISRLYA-RYFGGDLQIISME 347 (368)
Q Consensus 271 ~~~~~--~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~~~~~~~~~~~g~GlGL~i~k~i~-~~~gG~i~v~s~~ 347 (368)
..++. +.+.|+|+|.|+|.+. .. ...|+|+.+++.++ +..||.+...+..
T Consensus 153 ~~~~~~~~~l~v~deg~G~~~~~--------------------------~~-~~~g~G~~Lv~~lv~~q~~g~~~~~~~~ 205 (221)
T COG3920 153 REGDGGRFLLTVWDEGGGPPVEA--------------------------PL-SRGGFGLQLVERLVPEQLGGELEDERPD 205 (221)
T ss_pred EcCCCCeEEEEEEECCCCCCCCC--------------------------CC-CCCCcHHHHHHHHHHHHcCCeEEEEcCC
Confidence 77764 8999999999999873 00 26799999999999 8999999888754
Q ss_pred CCeeEEEEEEecccc
Q 017683 348 GYGELNMFSVLLYSY 362 (368)
Q Consensus 348 g~Gt~f~i~lP~~~~ 362 (368)
||.|+|.+|....
T Consensus 206 --Gt~~~i~~~~~~~ 218 (221)
T COG3920 206 --GTEFRLRFPLSEA 218 (221)
T ss_pred --CEEEEEEEecccc
Confidence 9999999998753
No 59
>PRK03660 anti-sigma F factor; Provisional
Probab=99.47 E-value=5.4e-13 Score=109.51 Aligned_cols=107 Identities=23% Similarity=0.261 Sum_probs=86.8
Q ss_pred cchhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEEEEeCCCceEEEEeecCCCCCCCCcccccccccccCCCCCCccc
Q 017683 232 VPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENT 311 (368)
Q Consensus 232 d~~~l~~vl~NLl~NAi~~~~~~~~~~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~ 311 (368)
+...+.+++.|++.||++|..... .++.|.|.+...++.+.+.|.|+|.||++ ..+.|++|+++...
T Consensus 36 ~~~~l~~~l~eli~Nai~h~~~~~-----~~~~i~i~~~~~~~~l~i~I~D~G~g~~~--~~~~~~~~~~~~~~------ 102 (146)
T PRK03660 36 ELTEIKTAVSEAVTNAIIHGYENN-----PDGVVYIEVEIEEEELEITVRDEGKGIED--IEEAMQPLYTTKPE------ 102 (146)
T ss_pred HHHhHHHHHHHHHHHHHHHhcCCC-----CCCEEEEEEEECCCEEEEEEEEccCCCCh--HHHhhCCCcccCCC------
Confidence 345689999999999999864311 03679999888888999999999999986 56889999876643
Q ss_pred ccccCCCCCCccccCHHHHHHHHHHhCCeEEEEecCCCeeEEEEEEeccccc
Q 017683 312 DLAADKGTMAGYGYGLPISRLYARYFGGDLQIISMEGYGELNMFSVLLYSYC 363 (368)
Q Consensus 312 ~~~~~~~~~~g~GlGL~i~k~i~~~~gG~i~v~s~~g~Gt~f~i~lP~~~~~ 363 (368)
..+.|+||+++++ +.+.+++++.++.||+|+++.++.+..
T Consensus 103 --------~~~~GlGL~i~~~----~~~~i~~~~~~~~Gt~~~i~~~~~~~~ 142 (146)
T PRK03660 103 --------LERSGMGFTVMES----FMDEVEVESEPGKGTTVRMKKYLKKSK 142 (146)
T ss_pred --------CCCccccHHHHHH----hCCeEEEEecCCCcEEEEEEEEecccc
Confidence 2478999998875 567899999889999999999987754
No 60
>TIGR01052 top6b DNA topoisomerase VI, B subunit. This model describes DNA topoisomerase VI, an archaeal type II DNA topoisomerase (DNA gyrase).
Probab=99.45 E-value=3.8e-13 Score=128.47 Aligned_cols=111 Identities=28% Similarity=0.432 Sum_probs=86.2
Q ss_pred eeecchhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEEEEeCC-CceEEEEeecCCCCCCCCcccccccccccCCCCC
Q 017683 229 FPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGL-EDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPL 307 (368)
Q Consensus 229 ~~~d~~~l~~vl~NLl~NAi~~~~~~~~~~~~~~~~I~i~~~~~~-~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~ 307 (368)
+.++...|.+++.||++||++|+.... ..+.|.|.+...+ +.+.|.|.|||+||+++.++++|.+|+.+.....
T Consensus 22 f~~~~~~L~~VlkELVeNAIDA~~~~g-----~~p~I~V~i~~~g~~~~~I~V~DNG~GIp~edl~~iF~rf~~tsK~~~ 96 (488)
T TIGR01052 22 YSGKIRSLTTVIHELVTNSLDACEEAG-----ILPDIKVEIEKIGKDHYKVTVEDNGPGIPEEYIPKVFGKMLAGSKFHR 96 (488)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhhccC-----CCceEEEEEEECCCceEEEEEEECCCCCCHHHHHhhhhhccccCcccc
Confidence 445667899999999999999986510 0236888887643 4678999999999999999999999877654300
Q ss_pred CcccccccCCCCCCccccCHHHHHHHHHHhCCe-EEEEecCCCeeEE
Q 017683 308 DENTDLAADKGTMAGYGYGLPISRLYARYFGGD-LQIISMEGYGELN 353 (368)
Q Consensus 308 ~~~~~~~~~~~~~~g~GlGL~i~k~i~~~~gG~-i~v~s~~g~Gt~f 353 (368)
.....++.|+||+++..+++.|+|+ +++.|..+ |..|
T Consensus 97 --------~~~s~G~~GlGLs~~~~isq~~~G~~i~V~S~~~-g~~~ 134 (488)
T TIGR01052 97 --------IIQSRGQQGIGISGAVLYSQMTTGKPVKVISSTG-GEIY 134 (488)
T ss_pred --------ccccCCCccEehhHHHHHHHHcCCceEEEEEecC-CceE
Confidence 0123458999999999999999998 99988865 5544
No 61
>PRK14868 DNA topoisomerase VI subunit B; Provisional
Probab=99.43 E-value=3.4e-13 Score=132.84 Aligned_cols=118 Identities=23% Similarity=0.217 Sum_probs=81.0
Q ss_pred eeecchhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEEEEeCCCceEEEEeecCCCCCCCCcccccccccccCCCCCC
Q 017683 229 FPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLD 308 (368)
Q Consensus 229 ~~~d~~~l~~vl~NLl~NAi~~~~~~~~~~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~ 308 (368)
+..+...|.+++.|||+||++|+.... ..+.|.|.+...+..+.|.|.|||+||+++.++++|++|+.+..-...
T Consensus 40 fD~d~r~L~tVLkNLIeNALDAs~~~g-----ilp~I~V~Ie~~g~~v~I~VeDNG~GIp~EdLp~IFerf~~tSKf~~~ 114 (795)
T PRK14868 40 FDSGARGLVTAVKEAVDNALDATEEAG-----ILPDIYVEIEEVGDYYRLVVEDNGPGITKEQIPKVFGKLLYGSRFHAR 114 (795)
T ss_pred ccCCHHHHHHHHHHHHHHHHHhCcccC-----CCceEEEEEEECCCEEEEEEEEcCCCCCHHHHHHHhhhhccccccccc
Confidence 334566799999999999999986510 013688898888888999999999999999999999999755321000
Q ss_pred cccccccCCCCCCccccCHHHHHHHHHHhCCeEEEEecCCC---eeEEEEEEe
Q 017683 309 ENTDLAADKGTMAGYGYGLPISRLYARYFGGDLQIISMEGY---GELNMFSVL 358 (368)
Q Consensus 309 ~~~~~~~~~~~~~g~GlGL~i~k~i~~~~gG~i~v~s~~g~---Gt~f~i~lP 358 (368)
.......|.|||+.++...+ .+||.+.+.|..+. |+.|.+.+-
T Consensus 115 ------~~srG~rG~GLglai~~sql-t~GgpI~I~S~~~~~~~g~~~~L~Id 160 (795)
T PRK14868 115 ------EQSRGQQGIGISAAVLYSQL-TSGKPAKITSRTQGSEEAQYFELIID 160 (795)
T ss_pred ------ccCCCCCceehHHHHHHHHH-cCCCcEEEEeCCCCCCceeEEEEEEe
Confidence 00122335555555555444 36888999998643 333455543
No 62
>PRK14867 DNA topoisomerase VI subunit B; Provisional
Probab=99.43 E-value=9.1e-13 Score=129.57 Aligned_cols=113 Identities=25% Similarity=0.393 Sum_probs=88.7
Q ss_pred hHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEEEEeC-CCceEEEEeecCCCCCCCCcccccccccccCCCCCCccccc
Q 017683 235 HLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADG-LEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDL 313 (368)
Q Consensus 235 ~l~~vl~NLl~NAi~~~~~~~~~~~~~~~~I~i~~~~~-~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~~~ 313 (368)
.|.+++.||+.||++|..... ..+.|.|.+... .+.+.|.|.|||+|||++.++++|++|+++..-..
T Consensus 36 ~L~~VVkELVeNAIDA~~~~g-----~~p~I~V~I~~~g~~~~~I~V~DNG~GIp~e~l~~iFerF~atSK~~~------ 104 (659)
T PRK14867 36 SMTTIIHELVTNSLDACEEAE-----ILPDIKVEIEKLGSDHYKVAVEDNGPGIPPEFVPKVFGKMLAGSKMHR------ 104 (659)
T ss_pred HHHHHHHHHHHHHHHHhhccC-----CCceEEEEEEECCCcEEEEEEEeeCeeCCHHHHhhhhccccccCcccc------
Confidence 355999999999999987521 024788888764 45689999999999999999999999887653200
Q ss_pred ccCCCCCCccccCHHHHHHHHHHh-CCeEEEEecCCCeeEEEEEEecc
Q 017683 314 AADKGTMAGYGYGLPISRLYARYF-GGDLQIISMEGYGELNMFSVLLY 360 (368)
Q Consensus 314 ~~~~~~~~g~GlGL~i~k~i~~~~-gG~i~v~s~~g~Gt~f~i~lP~~ 360 (368)
.....++.|+||+++..+++.+ ||.+.+.|.++.|++|++.+|+.
T Consensus 105 --~~qS~G~rG~GLa~a~~vsql~~G~pI~I~S~~g~G~~f~i~L~i~ 150 (659)
T PRK14867 105 --LIQSRGQQGIGAAGVLLFSQITTGKPLKITTSTGDGKIHEMEIKMS 150 (659)
T ss_pred --eeccCCCCcccHHHHHHHHHHhcCCcEEEEEEcCCCEEEEEEEEEE
Confidence 0122457899999999999775 56699999999999999998873
No 63
>PRK04069 serine-protein kinase RsbW; Provisional
Probab=99.27 E-value=3.6e-11 Score=100.15 Aligned_cols=105 Identities=13% Similarity=0.076 Sum_probs=82.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEEEEeCCCceEEEEeecCCCCCCCCcccccccccccCCCCCCcccc
Q 017683 233 PSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTD 312 (368)
Q Consensus 233 ~~~l~~vl~NLl~NAi~~~~~~~~~~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~~ 312 (368)
...+..++.+++.||++|..... .++.|.|.+...++.+.|.|.|+|+||+++.++..|.+|++....
T Consensus 40 ~~~l~lav~Ea~~Nai~Hg~~~~-----~~~~I~I~~~~~~~~l~i~V~D~G~g~d~~~~~~~~~p~~~~~~~------- 107 (161)
T PRK04069 40 IEDMKIAVSEACTNAVQHAYKED-----EVGEIHIRFEIYEDRLEIVVADNGVSFDYETLKSKLGPYDISKPI------- 107 (161)
T ss_pred HHHHHHHHHHHHHHHHHhccCCC-----CCCeEEEEEEEECCEEEEEEEECCcCCChHHhccccCCCCCCCcc-------
Confidence 34688999999999999985411 146899999888999999999999999999888899988765543
Q ss_pred cccCCCCCCccccCHHHHHHHHHHhCCeEEEEecCCCeeEEEEEEecc
Q 017683 313 LAADKGTMAGYGYGLPISRLYARYFGGDLQIISMEGYGELNMFSVLLY 360 (368)
Q Consensus 313 ~~~~~~~~~g~GlGL~i~k~i~~~~gG~i~v~s~~g~Gt~f~i~lP~~ 360 (368)
....+.|+||++++.+++. +.+.+ ..|++|++.-.+.
T Consensus 108 -----~~~~~~G~GL~li~~l~d~----v~~~~--~~G~~v~~~k~~~ 144 (161)
T PRK04069 108 -----EDLREGGLGLFLIETLMDD----VTVYK--DSGVTVSMTKYIN 144 (161)
T ss_pred -----cccCCCceeHHHHHHHHHh----EEEEc--CCCcEEEEEEEcC
Confidence 1234779999999999976 66665 3588888765543
No 64
>COG3851 UhpB Signal transduction histidine kinase, glucose-6-phosphate specific [Signal transduction mechanisms]
Probab=99.25 E-value=1.5e-09 Score=97.49 Aligned_cols=187 Identities=14% Similarity=0.149 Sum_probs=121.0
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHhhccCcccccCChHHHHHHHHHHHHhhHHHHHhHHHHhhhcCCCCCCCcccccccCC
Q 017683 113 MIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIGQHVELHNPNPPPHCIGYIDTKM 192 (368)
Q Consensus 113 ~l~~~~~~~~~~l~~l~~~~~el~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~li~~ll~l~~~~~~~~~~~~~~~~~ 192 (368)
+.+.+..|+.+.++.|.--..-.+..-+ .+.+++....+..-+.++..-+.+++.--|+.. ....
T Consensus 306 vARELHDeIGQnITAIr~Qa~ivkR~~~-------~~q~kqaas~Ie~LslrI~~svrqLL~rLRP~~--------LDdL 370 (497)
T COG3851 306 VARELHDEIGQNITAIRTQAGIVKRAAD-------NAQVKQAASLIEQLSLRIYDSVRQLLGRLRPRQ--------LDDL 370 (497)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHhccC-------CHhHHhHHHHHHHHHHHHHHHHHHHHHhcCCcc--------cccc
Confidence 3344444456666655444433333111 223333333332223333334445544444321 2466
Q ss_pred CHHHHHHHHHHHHHHHHHHhhCCCCceEEecC--CCceeeecchhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEEEE
Q 017683 193 SPVQVARNASEHARCVCLREYGSAPDFNIYGD--PSFTFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVA 270 (368)
Q Consensus 193 ~l~~li~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~~d~~~l~~vl~NLl~NAi~~~~~~~~~~~~~~~~I~i~~~ 270 (368)
-+.+.++..+++++-. ++ ++...++-. +...-..-+.-+.++..++++|-+||... ..|+|.+.
T Consensus 371 ~l~qai~~l~~Em~~~--er---gihcq~~~~~n~~~ldet~rvTLyRl~QE~LNNI~KHA~A---------S~V~i~l~ 436 (497)
T COG3851 371 TLEQAIRSLLREMELE--ER---GIHCQLDWRINETALDETQRVTLYRLCQELLNNICKHADA---------SAVTIQLW 436 (497)
T ss_pred cHHHHHHHHHHHhhhh--hc---CeEEEeccccCcccCCcceeEeHHHHHHHHHHHHHhcccc---------ceEEEEEe
Confidence 7888888888877643 22 333333321 11111122345999999999999999876 88999999
Q ss_pred eCCCceEEEEeecCCCCCCCCcccccccccccCCCCCCcccccccCCCCCCccccCHHHHHHHHHHhCCeEEEEecCCCe
Q 017683 271 DGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAADKGTMAGYGYGLPISRLYARYFGGDLQIISMEGYG 350 (368)
Q Consensus 271 ~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~~~~~~~~~~~g~GlGL~i~k~i~~~~gG~i~v~s~~g~G 350 (368)
.+++.+.++|+|||.|+|+.. +-.|+||.-.++-+..+||++.++|. .|
T Consensus 437 ~~~e~l~Lei~DdG~Gl~~~~-----------------------------~v~G~Gl~GmrERVsaLGG~ltlssq--~G 485 (497)
T COG3851 437 QQDERLMLEIEDDGSGLPPGS-----------------------------GVQGFGLTGMRERVSALGGTLTLSSQ--HG 485 (497)
T ss_pred eCCcEEEEEEecCCcCCCCCC-----------------------------CccCcCcchHHHHHHHhCCceEEEec--cC
Confidence 999999999999999999862 25688999999999999999999994 58
Q ss_pred eEEEEEEec
Q 017683 351 ELNMFSVLL 359 (368)
Q Consensus 351 t~f~i~lP~ 359 (368)
|++.|.+|.
T Consensus 486 TrviVnLPq 494 (497)
T COG3851 486 TRVIVNLPQ 494 (497)
T ss_pred cEEEEecch
Confidence 999999993
No 65
>COG3275 LytS Putative regulator of cell autolysis [Signal transduction mechanisms]
Probab=99.20 E-value=1e-09 Score=101.97 Aligned_cols=157 Identities=22% Similarity=0.206 Sum_probs=112.8
Q ss_pred HHhHHHHhhhcCCCCCCCcccccccCCCHHHHHHHHHHHHHHHHHHhhCCCCceEEecCCCceeeecchhHHHHHHHHHH
Q 017683 166 RMLIGQHVELHNPNPPPHCIGYIDTKMSPVQVARNASEHARCVCLREYGSAPDFNIYGDPSFTFPYVPSHLHLMVFELVK 245 (368)
Q Consensus 166 ~~li~~ll~l~~~~~~~~~~~~~~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~d~~~l~~vl~NLl~ 245 (368)
+.|+.++-.+.|.+-+... .+.+.|.+-++.+-..++. -+.+++...++.++.++...-...|.. +++-|+.
T Consensus 395 reLil~LS~yfR~NL~~~~----~~~v~L~kEl~~v~AYl~I-EkARF~~rL~v~i~id~~l~~~~iP~f---ilQPLVE 466 (557)
T COG3275 395 RELILYLSTYFRYNLENNT----QEIVTLSKELEHVNAYLSI-EKARFGDRLDVVIDIDEELRQVQIPSF---ILQPLVE 466 (557)
T ss_pred HHHHHHHHHHHHHHhcCCc----ceEeehHHHHHHHHHHHHH-HHHhcCCceEEEEecCHHHhhccCchh---hhhHHHH
Confidence 4455555555443222111 1567888888776665543 345566667777777666543444543 4566899
Q ss_pred HHHHHHHHhhcCCCCCCCCEEEEEEeCCCceEEEEeecCCCCCCCCcccccccccccCCCCCCcccccccCCCCCCcccc
Q 017683 246 NSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAADKGTMAGYGY 325 (368)
Q Consensus 246 NAi~~~~~~~~~~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~~~~~~~~~~~g~Gl 325 (368)
||+||...... ..+.|.|++.+.+..+.+.|+|||.|++|+. ..|.|+
T Consensus 467 NAIKHG~~~~~----~~g~V~I~V~~~d~~l~i~VeDng~li~p~~----------------------------~~g~gi 514 (557)
T COG3275 467 NAIKHGISQLK----DTGRVTISVEKEDADLRIEVEDNGGLIQPDE----------------------------EDGTGI 514 (557)
T ss_pred HHHHhcccchh----cCCceEEEEEEeCCeEEEEEecCCCCcCCCC----------------------------CCCCCh
Confidence 99999854221 1589999999999999999999999999971 249999
Q ss_pred CHHHHHHHHHHhCC---eEEEEecCCCeeEEEEEEecccc
Q 017683 326 GLPISRLYARYFGG---DLQIISMEGYGELNMFSVLLYSY 362 (368)
Q Consensus 326 GL~i~k~i~~~~gG---~i~v~s~~g~Gt~f~i~lP~~~~ 362 (368)
||..+++-++.+=| -+.+.+.+..||++.+++|....
T Consensus 515 GL~nv~~RLk~lyG~~~gl~i~~~~q~gTri~f~lp~~~~ 554 (557)
T COG3275 515 GLANVHKRLKLLYGDDEGLHIESLEQAGTRIIFRLPLQRT 554 (557)
T ss_pred HHHHHHHHHHHhcCccccceEEeccCCCcEEEEEecCccc
Confidence 99999998877666 68899998889999999998754
No 66
>PF14501 HATPase_c_5: GHKL domain
Probab=99.18 E-value=6.7e-10 Score=84.83 Aligned_cols=99 Identities=18% Similarity=0.131 Sum_probs=75.6
Q ss_pred cchhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEEEEeCCCceEEEEeecCCCCCCCCcccccccccccCCCCCCccc
Q 017683 232 VPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENT 311 (368)
Q Consensus 232 d~~~l~~vl~NLl~NAi~~~~~~~~~~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~ 311 (368)
++..|..+|.||++||++|+..... .+.|.|.+...++.+.|.|.+.-.+ +. +.++ +.+.
T Consensus 2 ~~~dl~~il~nlldNAiea~~~~~~-----~~~I~i~~~~~~~~~~i~i~N~~~~---~~-~~~~----~~~~------- 61 (100)
T PF14501_consen 2 DDLDLCRILGNLLDNAIEACKKYED-----KRFISISIREENGFLVIIIENSCEK---EI-EKLE----SSSS------- 61 (100)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCC-----CcEEEEEEEecCCEEEEEEEECCCC---cc-cccc----cccc-------
Confidence 3456889999999999999876321 4689999999999999999998544 22 2322 1111
Q ss_pred ccccCCCCCCccccCHHHHHHHHHHhCCeEEEEecCCCeeEEEEEEe
Q 017683 312 DLAADKGTMAGYGYGLPISRLYARYFGGDLQIISMEGYGELNMFSVL 358 (368)
Q Consensus 312 ~~~~~~~~~~g~GlGL~i~k~i~~~~gG~i~v~s~~g~Gt~f~i~lP 358 (368)
...+.|+||..++.+++.++|.+.++...+ =.+++|.||
T Consensus 62 -------~~~~~G~GL~~v~~i~~~y~g~~~~~~~~~-~f~~~i~ip 100 (100)
T PF14501_consen 62 -------KKKGHGIGLKNVKKILEKYNGSLSIESEDG-IFTVKIVIP 100 (100)
T ss_pred -------CCCCCCcCHHHHHHHHHHCCCEEEEEEECC-EEEEEEEEC
Confidence 145999999999999999999999988755 456667666
No 67
>TIGR01924 rsbW_low_gc serine-protein kinase RsbW. This model describes the anti-sigma B factor also known as serine-protein kinase RsbW. Sigma B controls the general stress regulon in B subtilis and is activated by cell stresses such as stationary phase and heat shock. RsbW binds to sigma B and prevents formation of the transcription complex at the promoter. RsbV (anti-anti-sigma factor) binds to RsbW to inhibit association with sigma B, however RsbW can phosphorylate RsbV, causing disassociation of the RsbV/RsbW complex. Low ATP level or environmental stress causes the dephosphorylation of RsbV.
Probab=99.12 E-value=7.8e-10 Score=91.82 Aligned_cols=103 Identities=16% Similarity=0.153 Sum_probs=79.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEEEEeCCCceEEEEeecCCCCCCCCcccccccccccCCCCCCccccc
Q 017683 234 SHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDL 313 (368)
Q Consensus 234 ~~l~~vl~NLl~NAi~~~~~~~~~~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~~~ 313 (368)
..+..++.+++.||++|.... ..++.|.|.+...++.+.+.|+|+|+|++++.++..|.+++.....
T Consensus 41 ~~l~lav~Ea~~Nai~ha~~~-----~~~~~I~I~~~~~~~~l~i~V~D~G~gfd~~~~~~~~~~~~~~~~~-------- 107 (159)
T TIGR01924 41 EDLKIAVSEACTNAVKHAYKE-----GENGEIGISFHIYEDRLEIIVSDQGDSFDMDTFKQSLGPYDGSEPI-------- 107 (159)
T ss_pred HHHHHHHHHHHHHHHHhccCC-----CCCCeEEEEEEEeCCEEEEEEEEcccccCchhhccccCCCCCCCCc--------
Confidence 358889999999999998541 1146899999888999999999999999999888888877654432
Q ss_pred ccCCCCCCccccCHHHHHHHHHHhCCeEEEEecCCCeeEEEEEEec
Q 017683 314 AADKGTMAGYGYGLPISRLYARYFGGDLQIISMEGYGELNMFSVLL 359 (368)
Q Consensus 314 ~~~~~~~~g~GlGL~i~k~i~~~~gG~i~v~s~~g~Gt~f~i~lP~ 359 (368)
....+.|+||++++.+++ ++.+.+ +.|+++++...+
T Consensus 108 ----~~~~~~G~GL~Li~~L~D----~v~~~~--~~G~~l~l~k~~ 143 (159)
T TIGR01924 108 ----DDLREGGLGLFLIETLMD----EVEVYE--DSGVTVAMTKYL 143 (159)
T ss_pred ----ccCCCCccCHHHHHHhcc----EEEEEe--CCCEEEEEEEEE
Confidence 223478999999999998 577766 346777776544
No 68
>COG2972 Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]
Probab=99.06 E-value=8e-09 Score=100.68 Aligned_cols=124 Identities=21% Similarity=0.203 Sum_probs=92.2
Q ss_pred HHhhCCCCceEEecCCCceeeecchhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEEEEeCCCceEEEEeecCCCCCC
Q 017683 210 LREYGSAPDFNIYGDPSFTFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPR 289 (368)
Q Consensus 210 ~~~~~~~~~i~~~~~~~~~~~~d~~~l~~vl~NLl~NAi~~~~~~~~~~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~ 289 (368)
..+++..+++.+..++...-..| +..++..|++||++|+.+.. ..++.|.|.+...++.+.++|.|||+||++
T Consensus 328 ~~r~~~~le~~~~i~~~~~~l~~---p~l~lqpLvENAi~hgi~~~----~~~~~I~i~~~~~~~~i~i~i~Dng~g~~~ 400 (456)
T COG2972 328 KLRIGDRLEVPLPIDEELEPLID---PKLVLQPLVENAIEHGIEPK----RPGGSIAISAKKQDDVIQISISDNGPGIDE 400 (456)
T ss_pred HhccCcceEEEeccCcccccccC---chHHHhHHHHHHHHHhcccC----CCCCEEEEEEEEcCCEEEEEEeeCCCCCCh
Confidence 34444444555544444332334 45788999999999995522 126789999998899999999999999999
Q ss_pred CCcccccccccccCCCCCCcccccccCCCCCCc-cccCHHHHHHHHHHhCCe--EEEEecCCCeeEEEEEEeccc
Q 017683 290 SGLPKIFTYLYSTARNPLDENTDLAADKGTMAG-YGYGLPISRLYARYFGGD--LQIISMEGYGELNMFSVLLYS 361 (368)
Q Consensus 290 ~~~~~if~~f~~~~~~~~~~~~~~~~~~~~~~g-~GlGL~i~k~i~~~~gG~--i~v~s~~g~Gt~f~i~lP~~~ 361 (368)
+....+.+ +. ++ .|+||.-++.++..|-|. +.++|.+++||.+.+.+|...
T Consensus 401 ~~~~~~~~-----~~----------------~~r~giGL~Nv~~rl~~~~g~~~~~i~s~~~~gt~v~~~~~~~~ 454 (456)
T COG2972 401 EKLEGLST-----KG----------------ENRSGIGLSNVKERLKLYFGEPGLSIDSQPGKGTFVQIIIPKRE 454 (456)
T ss_pred hHHHHHHh-----hc----------------cCcccccHHHHHHHHHHeeCCcceeEeecCCCcEEEEEEeehhh
Confidence 86554332 21 13 599999999999888887 689999999999999999764
No 69
>COG4564 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=98.92 E-value=1.2e-07 Score=84.42 Aligned_cols=128 Identities=20% Similarity=0.189 Sum_probs=93.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhhCCCCceEEecCCC--ceeeecchhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEE
Q 017683 191 KMSPVQVARNASEHARCVCLREYGSAPDFNIYGDPS--FTFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRII 268 (368)
Q Consensus 191 ~~~l~~li~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~d~~~l~~vl~NLl~NAi~~~~~~~~~~~~~~~~I~i~ 268 (368)
.+-|..-++..++.++ .+ .++.+.+..+.. ....-....|.+|..+-+.|-=+|+.. ..|.|.
T Consensus 319 DLGL~aALe~L~~~f~----~~--tg~~itle~~~~p~~l~~e~~talyRv~QEaltNIErHa~A---------trv~il 383 (459)
T COG4564 319 DLGLTAALEALLEDFK----ER--TGIEITLEFDTQPGKLKPEVATALYRVVQEALTNIERHAGA---------TRVTIL 383 (459)
T ss_pred hhhHHHHHHHHHHHhh----hc--cCeEEEEEecCCcccCCcHHHHHHHHHHHHHHHHHHhhcCC---------eEEEEE
Confidence 3344444555555443 33 244444443322 222233456889999999998887733 789999
Q ss_pred EEeCCCceEEEEeecCCCCCCCCcccccccccccCCCCCCcccccccCCCCCCccccCHHHHHHHHHHhCCeEEEEecCC
Q 017683 269 VADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAADKGTMAGYGYGLPISRLYARYFGGDLQIISMEG 348 (368)
Q Consensus 269 ~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~~~~~~~~~~~g~GlGL~i~k~i~~~~gG~i~v~s~~g 348 (368)
+...++.+.+.|+|||+|++.+.. .. .-.|+||--.+.-+..+||.+.++|.+.
T Consensus 384 l~~~~d~vql~vrDnG~GF~~~~~----------~~----------------~~~GiGLRNMrERma~~GG~~~v~s~p~ 437 (459)
T COG4564 384 LQQMGDMVQLMVRDNGVGFSVKEA----------LQ----------------KRHGIGLRNMRERMAHFGGELEVESSPQ 437 (459)
T ss_pred eccCCcceEEEEecCCCCccchhh----------cc----------------CccccccccHHHHHHHhCceEEEEecCC
Confidence 999999999999999999987631 11 1379999999999999999999999887
Q ss_pred CeeEEEEEEecc
Q 017683 349 YGELNMFSVLLY 360 (368)
Q Consensus 349 ~Gt~f~i~lP~~ 360 (368)
||..++.||..
T Consensus 438 -GTel~v~Lp~~ 448 (459)
T COG4564 438 -GTELTVLLPLD 448 (459)
T ss_pred -CcEEEEEecch
Confidence 99999999974
No 70
>PF13581 HATPase_c_2: Histidine kinase-like ATPase domain
Probab=98.71 E-value=1.1e-07 Score=75.58 Aligned_cols=95 Identities=20% Similarity=0.214 Sum_probs=72.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEEEEeCCCceEEEEeecCCCCCCCCcccccccccccCCCCCCccccc
Q 017683 234 SHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDL 313 (368)
Q Consensus 234 ~~l~~vl~NLl~NAi~~~~~~~~~~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~~~ 313 (368)
..+..++.+++.||++|..... ..++|.|.+...++.+.|.|.|+|+|+++...+.-...-.
T Consensus 30 ~~~~lav~E~~~Nav~H~~~~~-----~~~~v~v~~~~~~~~l~i~v~D~G~~~d~~~~~~~~~~~~------------- 91 (125)
T PF13581_consen 30 DDLELAVSEALTNAVEHGYPGD-----PDGPVDVRLEVDPDRLRISVRDNGPGFDPEQLPQPDPWEP------------- 91 (125)
T ss_pred HHHHHHHHHHHHHHHHHcCCCC-----CCcEEEEEEEEcCCEEEEEEEECCCCCChhhccCcccccC-------------
Confidence 3688999999999999986521 1367999999999999999999999999875444221110
Q ss_pred ccCCCCCCccccCHHHHHHHHHHhCCeEEEEecCCCeeEEEEE
Q 017683 314 AADKGTMAGYGYGLPISRLYARYFGGDLQIISMEGYGELNMFS 356 (368)
Q Consensus 314 ~~~~~~~~g~GlGL~i~k~i~~~~gG~i~v~s~~g~Gt~f~i~ 356 (368)
......|+||.+++.+++.+ .+ + .+.|+++++.
T Consensus 92 ----~~~~~~G~Gl~li~~l~D~~----~~-~-~~~gn~v~l~ 124 (125)
T PF13581_consen 92 ----DSLREGGRGLFLIRSLMDEV----DY-R-EDGGNTVTLR 124 (125)
T ss_pred ----CCCCCCCcCHHHHHHHHcEE----EE-E-CCCeEEEEEE
Confidence 11357899999999999875 44 4 5669998875
No 71
>COG1389 DNA topoisomerase VI, subunit B [DNA replication, recombination, and repair]
Probab=98.67 E-value=1.4e-07 Score=87.55 Aligned_cols=110 Identities=29% Similarity=0.493 Sum_probs=81.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEEEEeC-CCceEEEEeecCCCCCCCCcccccccc-cccCCCCCCccc
Q 017683 234 SHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADG-LEDVTIKVSDEGGGIPRSGLPKIFTYL-YSTARNPLDENT 311 (368)
Q Consensus 234 ~~l~~vl~NLl~NAi~~~~~~~~~~~~~~~~I~i~~~~~-~~~~~i~V~D~G~Gi~~~~~~~if~~f-~~~~~~~~~~~~ 311 (368)
-.|.+++..|+.||++++.+. +.-+.|.|.+... .+++.+.|.|||+|||++.++++|-++ |..+-. .
T Consensus 35 RsL~~tv~ElV~NSLDA~eea-----GILPdI~v~I~~~~~d~y~v~veDNGpGIP~e~IPkvFGk~LygSKfh-~---- 104 (538)
T COG1389 35 RSLTTTVHELVTNSLDACEEA-----GILPDIKVEIERIGKDHYKVIVEDNGPGIPEEQIPKVFGKMLYGSKFH-R---- 104 (538)
T ss_pred hHHHHHHHHHHhcchhhHHhc-----CCCCceEEEEEecCCceEEEEEecCCCCCChhHhHHHHHHHhccchhh-h----
Confidence 359999999999999999883 2347899999765 788999999999999999999999775 444321 0
Q ss_pred ccccCCCCCCccccCHHHHHHHHHHhCCe-EEEEecCC-CeeEEEEEE
Q 017683 312 DLAADKGTMAGYGYGLPISRLYARYFGGD-LQIISMEG-YGELNMFSV 357 (368)
Q Consensus 312 ~~~~~~~~~~g~GlGL~i~k~i~~~~gG~-i~v~s~~g-~Gt~f~i~l 357 (368)
..-..+-.|+|.+-|-.+.+..-|+ +.|.|..+ .++-..+.|
T Consensus 105 ----~~QsRGqqGiGis~avLysQmTtGkPv~V~s~T~~s~~~~~~~l 148 (538)
T COG1389 105 ----NIQSRGQQGIGISAAVLYSQMTTGKPVRVISSTGDSGTAYEYEL 148 (538)
T ss_pred ----hhhccccccccHHHHHHHHHhcCCCceEEEecCCCCcceEEEEE
Confidence 0112346799999999999998886 66666543 255444444
No 72
>TIGR00585 mutl DNA mismatch repair protein MutL. All proteins in this family for which the functions are known are involved in the process of generalized mismatch repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.49 E-value=4.4e-07 Score=83.94 Aligned_cols=60 Identities=33% Similarity=0.376 Sum_probs=50.5
Q ss_pred hHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEEEEeCCCceEEEEeecCCCCCCCCcccccccccccCCC
Q 017683 235 HLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARN 305 (368)
Q Consensus 235 ~l~~vl~NLl~NAi~~~~~~~~~~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~ 305 (368)
.+.+++.||+.||++|. ...|.|.+..+ +...|.|.|||.||++++++++|++|++++..
T Consensus 22 ~~~~~l~eLi~Na~dA~----------a~~I~i~~~~~-~~~~i~V~DnG~Gi~~~~l~~~~~~~~tsk~~ 81 (312)
T TIGR00585 22 RPASVVKELVENSLDAG----------ATRIDVEIEEG-GLKLIEVSDNGSGIDKEDLPLACERHATSKIQ 81 (312)
T ss_pred hHHHHHHHHHHHHHHCC----------CCEEEEEEEeC-CEEEEEEEecCCCCCHHHHHHHhhCCCcCCCC
Confidence 48899999999999974 25788877653 34569999999999999999999999998754
No 73
>COG2172 RsbW Anti-sigma regulatory factor (Ser/Thr protein kinase) [Signal transduction mechanisms]
Probab=98.47 E-value=2.7e-06 Score=69.18 Aligned_cols=93 Identities=22% Similarity=0.211 Sum_probs=70.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEEEEeCCCceEEEEeecCCCCCCCCcccccccccccCCCCCCccccc
Q 017683 234 SHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDL 313 (368)
Q Consensus 234 ~~l~~vl~NLl~NAi~~~~~~~~~~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~~~ 313 (368)
..++.++.+++.||++|...... ..++|.|.+...++.+.+.|.|.|+|+++ .+..+.+.+.+.+.
T Consensus 39 ~~l~~av~E~~~N~v~Ha~~~~~----~~g~I~i~~~~~~~~~~i~i~D~G~~~~~--~~~~~~~~~~~~~~-------- 104 (146)
T COG2172 39 ADLAIAVSEALTNAVKHAYKLDP----SEGEIRIEVSLDDGKLEIRIWDQGPGIED--LEESLGPGDTTAEG-------- 104 (146)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCC----CCceEEEEEEEcCCeEEEEEEeCCCCCCC--HHHhcCCCCCCCcc--------
Confidence 46899999999999999865221 12789999999999999999999976554 45666666555543
Q ss_pred ccCCCCCCccccCHHHHHHHHHHhCCeEEEEecCCCe
Q 017683 314 AADKGTMAGYGYGLPISRLYARYFGGDLQIISMEGYG 350 (368)
Q Consensus 314 ~~~~~~~~g~GlGL~i~k~i~~~~gG~i~v~s~~g~G 350 (368)
....|+||+++++++ .++.+++..+.+
T Consensus 105 ------~~~~G~Gl~l~~~~~----D~~~~~~~~~~~ 131 (146)
T COG2172 105 ------LQEGGLGLFLAKRLM----DEFSYERSEDGR 131 (146)
T ss_pred ------cccccccHHHHhhhh----eeEEEEeccCCc
Confidence 456799999999877 568888555543
No 74
>KOG0519 consensus Sensory transduction histidine kinase [Signal transduction mechanisms]
Probab=98.47 E-value=5.6e-08 Score=100.12 Aligned_cols=190 Identities=14% Similarity=0.091 Sum_probs=143.9
Q ss_pred hHHHHHHHHHHHHhhHHHHHhHHHHhhhcCCCCCCCcccccccCCCHHHHHHHHHHHHHHHHHHhhCCCCceEEecCCC-
Q 017683 148 LDEIHQFLDRFYMSRIGIRMLIGQHVELHNPNPPPHCIGYIDTKMSPVQVARNASEHARCVCLREYGSAPDFNIYGDPS- 226 (368)
Q Consensus 148 ~~~~~~~l~~~~~~~~~~~~li~~ll~l~~~~~~~~~~~~~~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~~~~~~~- 226 (368)
..+.+.++............+++++++.++. +.+...+.-.++++..++..+++.+...+..+ ...+....+.+
T Consensus 250 ~~~~~~~~~~~~~~~~~~~s~ln~i~d~~~v--~~g~~~l~~~rf~l~~ll~~~~~~~~e~~~~~---~~~l~~~~~~~~ 324 (786)
T KOG0519|consen 250 DSDQRLILNTDRVSAKSLLSLLNDILDLSKV--ESGKGELVAKRFDLRTLLNFVISLLSELSQAK---YAILVLDLSSGV 324 (786)
T ss_pred chHHHHHHHHHhhhccccchhHHHhhccccc--ccccceeeeeecchHhhhhhhhhhhHHHhhcC---CeEEEEecCCCC
Confidence 3455566666555555556689999999887 56777778899999999999999999888877 34444443333
Q ss_pred -ceeeecchhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEEEEeC---------------------------------
Q 017683 227 -FTFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADG--------------------------------- 272 (368)
Q Consensus 227 -~~~~~d~~~l~~vl~NLl~NAi~~~~~~~~~~~~~~~~I~i~~~~~--------------------------------- 272 (368)
-.+.+|+..+.+++.|++.||++++.. +.|.+.+...
T Consensus 325 p~~v~~de~~~~qv~~n~v~naik~t~~---------~~i~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~~~~ 395 (786)
T KOG0519|consen 325 PRNVRGDEARLRQVIANLVSNAIKFTHA---------GHLEESVIAREELSESNDVLLRAKEEAHMAGKARIDFLQKMSH 395 (786)
T ss_pred cceeeccceeeeeeehhhccceeccccc---------ceEEEEEEeehhcchhhHHHHhhhhhhhhccchhhhHHHHhcc
Confidence 468899999999999999999997765 4444443210
Q ss_pred ---------------CCceEEEEeecCCCCCCCCccc-ccccccccCCCCCCcccccccCCCCCCccccCHHHHHHHHHH
Q 017683 273 ---------------LEDVTIKVSDEGGGIPRSGLPK-IFTYLYSTARNPLDENTDLAADKGTMAGYGYGLPISRLYARY 336 (368)
Q Consensus 273 ---------------~~~~~i~V~D~G~Gi~~~~~~~-if~~f~~~~~~~~~~~~~~~~~~~~~~g~GlGL~i~k~i~~~ 336 (368)
--...+.+.|+|.||+...... +|..|-..... ..+..+|+|+|+.+++.+.+.
T Consensus 396 ~~~~~~~~~i~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~q~~~~----------~~~~~~gt~~~~~i~~~l~~l 465 (786)
T KOG0519|consen 396 AMRAPRHNIISLLSLLLQDIVLSPDSGLEIQTVMRSSNVFTSLIQADPD----------ITRLYGGTGLGESIVFSLVEL 465 (786)
T ss_pred ccccccccccccchhhHhheEeccCCceeEehhhhhhhHHHHHhccccc----------cccccCCCcccchhhccHHHH
Confidence 0112456778899998887766 78887665544 345578999999999999999
Q ss_pred hCCeEEEEecCCCeeEEEEEEeccc
Q 017683 337 FGGDLQIISMEGYGELNMFSVLLYS 361 (368)
Q Consensus 337 ~gG~i~v~s~~g~Gt~f~i~lP~~~ 361 (368)
++|.+.+.+....|++|++.+++..
T Consensus 466 ~~~~~~~~~~~~~~~t~~~~~~~~~ 490 (786)
T KOG0519|consen 466 MSGEISDISCISLGKTFSFTLDLLT 490 (786)
T ss_pred HHHHhhhhhhhccCceeeEEEEecc
Confidence 9999999999889999999988754
No 75
>PF13589 HATPase_c_3: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PDB: 3IED_A 2XCM_B 2JKI_B 3OPD_A 2O1V_B 2GQP_A 2O1W_C 1YT2_A 1TC6_A 2H8M_B ....
Probab=98.10 E-value=8.2e-07 Score=71.82 Aligned_cols=101 Identities=23% Similarity=0.342 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEEEEeC-CCceEEEEeecCCCCCCCCcccccccccccCCCCCCccccccc
Q 017683 237 HLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADG-LEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAA 315 (368)
Q Consensus 237 ~~vl~NLl~NAi~~~~~~~~~~~~~~~~I~i~~~~~-~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~~~~~ 315 (368)
..+|..||.||+.+... .|.|.+... .+...|.|.|||.||+++.+..+|...++.+....
T Consensus 4 ~~al~ElI~Ns~DA~a~----------~I~I~i~~~~~~~~~i~I~DnG~Gm~~~~l~~~~~~g~s~k~~~~-------- 65 (137)
T PF13589_consen 4 EDALRELIDNSIDAGAT----------NIKISIDEDKKGERYIVIEDNGEGMSREDLESFFRIGRSSKKSEK-------- 65 (137)
T ss_dssp THHHHHHHHHHHHHHHH----------HEEEEEEEETTTTTEEEEEESSS---HHHHHHHTTCHHTHHHHHH--------
T ss_pred HHHHHHHHHHHHHccCC----------EEEEEEEcCCCCCcEEEEEECCcCCCHHHHHHhccccCCCCCchh--------
Confidence 57899999999998865 477777655 46678999999999999999998877666554100
Q ss_pred CCCCCCccccCHHHHHHHHHHhCCeEEEEecC-CCeeEEEEEEe
Q 017683 316 DKGTMAGYGYGLPISRLYARYFGGDLQIISME-GYGELNMFSVL 358 (368)
Q Consensus 316 ~~~~~~g~GlGL~i~k~i~~~~gG~i~v~s~~-g~Gt~f~i~lP 358 (368)
.....+..|+|+..+- -.++..+.|.|.. +....+++..+
T Consensus 66 ~~~~~G~~G~G~k~A~---~~~~~~~~v~S~~~~~~~~~~~~~~ 106 (137)
T PF13589_consen 66 DRQSIGRFGIGLKLAI---FSLGDRVEVISKTNGESFTYTIDYD 106 (137)
T ss_dssp HGGGGGGGTSGCGGGG---GGTEEEEEEEEESTTSSSEEEEEEE
T ss_pred hhhcCCCcceEHHHHH---HHhcCEEEEEEEECCCCcEEEEEEe
Confidence 0112345677733221 1357788888873 33445555554
No 76
>PRK00095 mutL DNA mismatch repair protein; Reviewed
Probab=97.88 E-value=3.2e-05 Score=78.01 Aligned_cols=60 Identities=28% Similarity=0.256 Sum_probs=50.6
Q ss_pred hHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEEEEeCCCceEEEEeecCCCCCCCCcccccccccccCCC
Q 017683 235 HLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARN 305 (368)
Q Consensus 235 ~l~~vl~NLl~NAi~~~~~~~~~~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~ 305 (368)
.+..++.+|+.||++|. ...|.|.+. .++...|+|.|||.||++++++.+|.++++.+-.
T Consensus 22 ~~~svvkElveNsiDAg----------at~I~v~i~-~~g~~~i~V~DnG~Gi~~~~~~~~~~~~~tsKi~ 81 (617)
T PRK00095 22 RPASVVKELVENALDAG----------ATRIDIEIE-EGGLKLIRVRDNGCGISKEDLALALARHATSKIA 81 (617)
T ss_pred CHHHHHHHHHHHHHhCC----------CCEEEEEEE-eCCeEEEEEEEcCCCCCHHHHHHHhhccCCCCCC
Confidence 47899999999999964 367888885 4456789999999999999999999998877643
No 77
>PRK05559 DNA topoisomerase IV subunit B; Reviewed
Probab=97.65 E-value=0.00011 Score=74.16 Aligned_cols=88 Identities=24% Similarity=0.276 Sum_probs=61.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEEEEeCCCceEEEEeecCCCCCCCCccc--------ccccccccCC
Q 017683 233 PSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPK--------IFTYLYSTAR 304 (368)
Q Consensus 233 ~~~l~~vl~NLl~NAi~~~~~~~~~~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~--------if~~f~~~~~ 304 (368)
...+..++..|+.||++.....+ ...|.|.+..++ .|+|.|||+|||.+..+. +|.....+..
T Consensus 35 ~~gl~~lv~EivdNaiDe~~ag~------a~~I~V~i~~dg---~I~V~DnGrGIP~~~~~~~~~~~~E~v~t~lhagsK 105 (631)
T PRK05559 35 TRGLHHLVQEVIDNSVDEALAGH------GKRIEVTLHADG---SVSVRDNGRGIPVGIHPEEGKSGVEVILTKLHAGGK 105 (631)
T ss_pred CchhhhhhhhhhccccchhhcCC------CCEEEEEEeCCC---cEEEEEcCCCCCcccccccCCcchheeeeeccccCc
Confidence 45799999999999999865422 478999988664 799999999999998887 7877544332
Q ss_pred CCCCcccccccCCCCCCccccCHHHHHHHHH
Q 017683 305 NPLDENTDLAADKGTMAGYGYGLPISRLYAR 335 (368)
Q Consensus 305 ~~~~~~~~~~~~~~~~~g~GlGL~i~k~i~~ 335 (368)
-.. +......+-.|.|++.+..+.+
T Consensus 106 f~~------~~yk~SgGl~GvGls~vNalS~ 130 (631)
T PRK05559 106 FSN------KAYKFSGGLHGVGVSVVNALSS 130 (631)
T ss_pred cCC------ccccccCcccccchhhhhhhee
Confidence 100 0001112237899998887743
No 78
>PF00512 HisKA: His Kinase A (phospho-acceptor) domain; InterPro: IPR003661 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the dimerisation and phosphoacceptor domain found in histidine kinases. It has been found in bacterial sensor protein/histidine kinases. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms []. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and the phosphotransfer from aspartyl phosphate back to ADP or to water []. The homodimeric domain includes the site of histidine autophosphorylation and phosphate transfer reactions. The structure of the homodimeric domain comprises a closed, four-helical bundle with a left-handed twist, formed by two identical alpha-hairpin subunits.; GO: 0000155 two-component sensor activity, 0007165 signal transduction, 0016020 membrane; PDB: 3DGE_A 2C2A_A 3A0R_A 4EW8_A 2LFS_B 2LFR_B 3JZ3_A 1JOY_B 3ZRW_C 3ZRV_A ....
Probab=97.60 E-value=0.00016 Score=50.55 Aligned_cols=63 Identities=16% Similarity=0.222 Sum_probs=53.2
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHhh-ccCcccccCChHHHHHHHHHHHHhhHHHHHhHHHHhhhcCC
Q 017683 110 FTQMIKAIKVRHNNVVPMMALGLQQLKK-EMDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIGQHVELHNP 178 (368)
Q Consensus 110 ~~~~l~~~~~~~~~~l~~l~~~~~el~~-~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~li~~ll~l~~~ 178 (368)
.++++..+.||+++||+.+.+.++.+.. ... ..+...++++.+..+..++..++++++++++.
T Consensus 2 ~~~~~~~isHelr~PL~~i~~~~~~l~~~~~~------~~~~~~~~l~~i~~~~~~l~~li~~ll~~sr~ 65 (68)
T PF00512_consen 2 KGEFLASISHELRNPLTAIRGYLELLERDSDL------DPEQLREYLDRIRSAADRLNELINDLLDFSRI 65 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCC-------HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHccCC------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3569999999999999999999999887 222 23345899999999999999999999999886
No 79
>PRK05218 heat shock protein 90; Provisional
Probab=97.23 E-value=0.00056 Score=68.90 Aligned_cols=60 Identities=23% Similarity=0.361 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHhhcCC--------CCCCCCEEEEEEeCCCceEEEEeecCCCCCCCCcccccccc
Q 017683 238 LMVFELVKNSLRAVEERYMDS--------DKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYL 299 (368)
Q Consensus 238 ~vl~NLl~NAi~~~~~~~~~~--------~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f 299 (368)
..|..||+||.+|.......+ ....+.|.|.+.. +.-.|.|.|||.||+.+++...|...
T Consensus 29 v~lRELiqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~--~~~~i~I~DnG~GMt~eel~~~l~~i 96 (613)
T PRK05218 29 IFLRELISNASDAIDKLRFEALTDPALYEGDGDLKIRISFDK--EARTLTISDNGIGMTREEVIENLGTI 96 (613)
T ss_pred HHHHHHHhCHHHHHHHHHHHhccCccccCCCCCcEEEEEEcC--CCCeEEEEECCCCCCHHHHHHHHHhh
Confidence 468999999999986532100 1112345555443 33359999999999999988766443
No 80
>PTZ00272 heat shock protein 83 kDa (Hsp83); Provisional
Probab=97.10 E-value=0.00053 Score=69.44 Aligned_cols=58 Identities=26% Similarity=0.340 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHhhc----C--CCCCCCCEEEEEEeCCCceEEEEeecCCCCCCCCccccc
Q 017683 239 MVFELVKNSLRAVEERYM----D--SDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIF 296 (368)
Q Consensus 239 vl~NLl~NAi~~~~~~~~----~--~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if 296 (368)
.|..||+||.+|...... . ..+..+.+.|.+..+.+...+.|.|||+||+++++.+-+
T Consensus 29 flRELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~i~~d~~~~~L~I~DnGiGMt~edl~~~L 92 (701)
T PTZ00272 29 FLRELISNASDACDKIRYQSLTDPSVLGESPRLCIRVVPDKENKTLTVEDNGIGMTKADLVNNL 92 (701)
T ss_pred hHHHHHhhHHHHHHHHHHHhcCCchhcCCCCceEEEEEEcCCCCEEEEEECCCCCCHHHHHHHh
Confidence 378999999999865321 0 011135677887777777789999999999998866544
No 81
>COG0323 MutL DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair]
Probab=97.04 E-value=0.00031 Score=70.89 Aligned_cols=60 Identities=35% Similarity=0.367 Sum_probs=47.5
Q ss_pred hHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEEEEeCCCceEEEEeecCCCCCCCCcccccccccccCCC
Q 017683 235 HLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARN 305 (368)
Q Consensus 235 ~l~~vl~NLl~NAi~~~~~~~~~~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~ 305 (368)
+-..|+-+|+.||+++. ...|.|.+..+ +.-.|+|+|||+||++++++-.+.++.|.|=.
T Consensus 23 rPaSVVKELVENSlDAG----------At~I~I~ve~g-G~~~I~V~DNG~Gi~~~Dl~la~~rHaTSKI~ 82 (638)
T COG0323 23 RPASVVKELVENSLDAG----------ATRIDIEVEGG-GLKLIRVRDNGSGIDKEDLPLALLRHATSKIA 82 (638)
T ss_pred cHHHHHHHHHhcccccC----------CCEEEEEEccC-CccEEEEEECCCCCCHHHHHHHHhhhccccCC
Confidence 35688999999999974 24566666433 33359999999999999999999999888754
No 82
>PRK05644 gyrB DNA gyrase subunit B; Validated
Probab=96.82 E-value=0.0014 Score=66.17 Aligned_cols=50 Identities=32% Similarity=0.540 Sum_probs=39.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEEEEeCCCceEEEEeecCCCCCCCC
Q 017683 233 PSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSG 291 (368)
Q Consensus 233 ~~~l~~vl~NLl~NAi~~~~~~~~~~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~ 291 (368)
+.-|.+++.+||.||++-....+ ...|.|.+..++ .|+|.|||.|||.+.
T Consensus 35 ~~gl~~~v~ElvdNaiDe~~ag~------a~~I~V~i~~~g---~I~V~DnG~GIp~~~ 84 (638)
T PRK05644 35 ERGLHHLVYEIVDNSIDEALAGY------CDHIEVTINEDG---SITVTDNGRGIPVDI 84 (638)
T ss_pred hhhHHhhhHHhhhcccccccCCC------CCEEEEEEeCCC---cEEEEEeCccccCCc
Confidence 45689999999999998443311 468999987654 799999999999973
No 83
>smart00433 TOP2c TopoisomeraseII. Eukaryotic DNA topoisomerase II, GyrB, ParE
Probab=96.77 E-value=0.0018 Score=65.07 Aligned_cols=48 Identities=31% Similarity=0.461 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEEEEeCCCceEEEEeecCCCCCCCCc
Q 017683 236 LHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGL 292 (368)
Q Consensus 236 l~~vl~NLl~NAi~~~~~~~~~~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~ 292 (368)
|.+++.+|+.||+++....+ ...|.|.+..++ .|+|.|||.|||.+..
T Consensus 2 L~~~v~ElvdNAiD~~~~g~------at~I~V~i~~~g---~I~V~DnG~GIp~~~h 49 (594)
T smart00433 2 LHHLVDEIVDNAADEALAGY------MDTIKVTIDKDN---SISVEDNGRGIPVEIH 49 (594)
T ss_pred ceEEEeeehhcccchhccCC------CCEEEEEEeCCC---eEEEEEeCCceeCCcc
Confidence 45677889999999875422 478999987664 7999999999997643
No 84
>PTZ00130 heat shock protein 90; Provisional
Probab=96.73 E-value=0.0024 Score=65.18 Aligned_cols=119 Identities=18% Similarity=0.188 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHHHhhc----C--CCCCCCCEEEEEEeCCCceEEEEeecCCCCCCCCccccccc-ccccCCCCCCcccc
Q 017683 240 VFELVKNSLRAVEERYM----D--SDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTY-LYSTARNPLDENTD 312 (368)
Q Consensus 240 l~NLl~NAi~~~~~~~~----~--~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~-f~~~~~~~~~~~~~ 312 (368)
|..||+||..|...... . ..+....+.|.+..+.+.-.|.|.|||.||+.+++..-+.. .++..........+
T Consensus 93 LRELISNAsDAldKlr~~~lt~~~~~~~~~~~~I~I~~D~~~~tLtI~DnGIGMT~eEl~~nLgTIA~Sgt~~F~~~l~~ 172 (814)
T PTZ00130 93 LRELISNAADALEKIRFLSLSDESVLGEEKKLEIRISANKEKNILSITDTGIGMTKEDLINNLGTIAKSGTSNFLEAISK 172 (814)
T ss_pred eehHhhhHHHHHHHHHHHHcCCchhcCCCCCceEEEEECCCCCEEEEEECCCCCCHHHHHHHhhhhcccccHHHHHHhhc
Confidence 57899999999864221 0 00112355666655555557899999999999876544322 11111000000000
Q ss_pred cccCCCCCCccccCHHHHHHHHHH-------h-----------CCeEEEEec-----CCCeeEEEEEEe
Q 017683 313 LAADKGTMAGYGYGLPISRLYARY-------F-----------GGDLQIISM-----EGYGELNMFSVL 358 (368)
Q Consensus 313 ~~~~~~~~~g~GlGL~i~k~i~~~-------~-----------gG~i~v~s~-----~g~Gt~f~i~lP 358 (368)
.+....-.+..|+|.+-|-.+++. . +|..+|... .+.||++++.|.
T Consensus 173 ~~~~~~lIGQFGVGFYSaFmVAdkV~V~Trs~~~~~~~W~s~g~g~y~I~e~~~~~~~~rGT~I~LhLk 241 (814)
T PTZ00130 173 SGGDMSLIGQFGVGFYSAFLVADKVIVYTKNNNDEQYIWESTADAKFTIYKDPRGSTLKRGTRISLHLK 241 (814)
T ss_pred cCCCcccccccccchhheeeecCEEEEEEcCCCCceEEEEECCCCcEEEEECCCCCCCCCCcEEEEEEC
Confidence 001123356789998887554421 1 234444432 257999998885
No 85
>PRK14083 HSP90 family protein; Provisional
Probab=96.69 E-value=0.002 Score=64.43 Aligned_cols=58 Identities=24% Similarity=0.326 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCCCEEEEEEeCCCceEEEEeecCCCCCCCCccccc
Q 017683 238 LMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIF 296 (368)
Q Consensus 238 ~vl~NLl~NAi~~~~~~~~~~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if 296 (368)
..+.+||+||.++...+........+.|.|.+. +.+...+.|.|||+||+.+++.+.|
T Consensus 26 iflrELiqNA~DA~~~~~~~~~~~~~~I~I~~~-d~~~~~l~I~DnGiGmt~eel~~~l 83 (601)
T PRK14083 26 VYVRELLQNAVDAITARRALDPTAPGRIRIELT-DAGGGTLIVEDNGIGLTEEEVHEFL 83 (601)
T ss_pred HHHHHHHHhHHHHHHhhhccCCCCCceEEEEEc-cCCCcEEEEEeCCCCCCHHHHHHHH
Confidence 678999999999987643222222357777764 4456789999999999999888765
No 86
>TIGR01055 parE_Gneg DNA topoisomerase IV, B subunit, proteobacterial. This protein is active as an alpha(2)beta(2) heterotetramer.
Probab=96.61 E-value=0.0037 Score=63.06 Aligned_cols=86 Identities=20% Similarity=0.228 Sum_probs=55.5
Q ss_pred hHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEEEEeCCCceEEEEeecCCCCCCCC--------ccccc-ccccccCCC
Q 017683 235 HLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSG--------LPKIF-TYLYSTARN 305 (368)
Q Consensus 235 ~l~~vl~NLl~NAi~~~~~~~~~~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~--------~~~if-~~f~~~~~~ 305 (368)
...+++.+||.||++-..... ...|.|.+..+ -.|+|.|||.|||.+. ++-+| ....+.+-.
T Consensus 30 ~~~~lv~ElvdNsiDE~~ag~------a~~I~V~i~~d---~~I~V~DnGrGIp~~~h~~~g~~~~e~v~t~lhagsK~~ 100 (625)
T TIGR01055 30 RPNHLVQEVIDNSVDEALAGF------ASIIMVILHQD---QSIEVFDNGRGMPVDIHPKEGVSAVEVILTTLHAGGKFS 100 (625)
T ss_pred CcceeehhhhhcccchhhcCC------CCEEEEEEeCC---CeEEEEecCCccCcccccccCCcHHHHhhhcccccCCCC
Confidence 357788899999998433211 47899998655 3699999999999987 55566 332222211
Q ss_pred CCCcccccccCCCCCCccccCHHHHHHHHHH
Q 017683 306 PLDENTDLAADKGTMAGYGYGLPISRLYARY 336 (368)
Q Consensus 306 ~~~~~~~~~~~~~~~~g~GlGL~i~k~i~~~ 336 (368)
.+......+-.|.||+.+..+.+.
T Consensus 101 -------~~~~~~SgG~~GvGls~vnalS~~ 124 (625)
T TIGR01055 101 -------NKNYHFSGGLHGVGISVVNALSKR 124 (625)
T ss_pred -------CCcceecCCCcchhHHHHHHhcCe
Confidence 000011223379999999888773
No 87
>TIGR01059 gyrB DNA gyrase, B subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV. Proteins scoring above the noise cutoff for this model and below the trusted cutoff for topoisomerase IV models probably should be designated GyrB.
Probab=96.60 E-value=0.0053 Score=62.52 Aligned_cols=50 Identities=32% Similarity=0.556 Sum_probs=39.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEEEEeCCCceEEEEeecCCCCCCCC
Q 017683 233 PSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSG 291 (368)
Q Consensus 233 ~~~l~~vl~NLl~NAi~~~~~~~~~~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~ 291 (368)
+.-|.+++.+|+.||++-....+ ...|.|.+..++ .|+|.|||.|||.+.
T Consensus 28 ~~gl~~vv~Elv~NaiDe~~ag~------a~~I~V~i~~~g---~I~V~DnG~GIp~~~ 77 (654)
T TIGR01059 28 ETGLHHLVYEVVDNSIDEAMAGY------CDTINVTINDDG---SVTVEDNGRGIPVDI 77 (654)
T ss_pred cchHHhhhHHhhhccccccccCC------CCEEEEEEeCCC---cEEEEEeCCCcCccc
Confidence 45699999999999998443211 478999987654 399999999999873
No 88
>cd00082 HisKA Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via trans-autophosphorylation by the catalytic domain of the histidine kinase. They subsequently transfer the phosphoryl group to the Asp acceptor residue of a response regulator protein. Two-component signalling systems, consisting of a histidine protein kinase that senses a signal input and a response regulator that mediates the output, are ancient and evolutionarily conserved signaling mechanisms in prokaryotes and eukaryotes.
Probab=96.27 E-value=0.041 Score=36.77 Aligned_cols=62 Identities=16% Similarity=0.237 Sum_probs=48.2
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHhhccCcccccCChHHHHHHHHHHHHhhHHHHHhHHHHhhhcC
Q 017683 110 FTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIGQHVELHN 177 (368)
Q Consensus 110 ~~~~l~~~~~~~~~~l~~l~~~~~el~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~li~~ll~l~~ 177 (368)
...++..+.|++++|+..+...++.+..... ..+.....++.+......+..++++++.+++
T Consensus 4 ~~~~~~~~~hel~~pl~~i~~~~~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 65 (65)
T cd00082 4 KGEFLANVSHELRTPLTAIRGALELLEEELL------DDEEQREYLERIREEAERLLRLINDLLDLSR 65 (65)
T ss_pred HHHHHHHHhHHhcchHHHHHHHHHHHHhccc------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4568889999999999999988877776443 1456677778777778888888988887753
No 89
>PRK14939 gyrB DNA gyrase subunit B; Provisional
Probab=96.03 E-value=0.0075 Score=61.75 Aligned_cols=49 Identities=31% Similarity=0.480 Sum_probs=39.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEEEEeCCCceEEEEeecCCCCCCCC
Q 017683 234 SHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSG 291 (368)
Q Consensus 234 ~~l~~vl~NLl~NAi~~~~~~~~~~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~ 291 (368)
.-|.+++..++.||++-....+ ...|.|.+..++ .|+|.|||.|||.+.
T Consensus 36 ~GLhhlv~EivdNaiDE~~AG~------a~~I~V~i~~dg---sIsV~DnGrGIPvd~ 84 (756)
T PRK14939 36 TGLHHMVYEVVDNAIDEALAGH------CDDITVTIHADG---SVSVSDNGRGIPTDI 84 (756)
T ss_pred cchhhhhhHhhcccccccccCC------CCEEEEEEcCCC---eEEEEEcCCcccCCc
Confidence 4599999999999998443322 478999997654 799999999999974
No 90
>smart00388 HisKA His Kinase A (phosphoacceptor) domain. Dimerisation and phosphoacceptor domain of histidine kinases.
Probab=95.57 E-value=0.09 Score=35.29 Aligned_cols=61 Identities=13% Similarity=0.153 Sum_probs=46.6
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHhhccCcccccCChHHHHHHHHHHHHhhHHHHHhHHHHhhhcCC
Q 017683 111 TQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIGQHVELHNP 178 (368)
Q Consensus 111 ~~~l~~~~~~~~~~l~~l~~~~~el~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~li~~ll~l~~~ 178 (368)
.+++..+.|++++|+..+...+..+...-. .+....+++.+......+..++++++.+++.
T Consensus 3 ~~~~~~i~Hel~~pl~~i~~~~~~l~~~~~-------~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~ 63 (66)
T smart00388 3 REFLANLSHELRTPLTAIRGYLELLEDTEL-------SEEQREYLETILRSAERLLRLINDLLDLSRI 63 (66)
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHhCCC-------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 458888999999999999988866665211 2233677787777888888899999988765
No 91
>COG0326 HtpG Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones]
Probab=95.30 E-value=0.02 Score=56.65 Aligned_cols=95 Identities=19% Similarity=0.298 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHHHHhhc----CC--CCCCCCEEEEEEeCCCceEEEEeecCCCCCCCCccccccc-ccccCCCCCCcc
Q 017683 238 LMVFELVKNSLRAVEERYM----DS--DKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTY-LYSTARNPLDEN 310 (368)
Q Consensus 238 ~vl~NLl~NAi~~~~~~~~----~~--~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~-f~~~~~~~~~~~ 310 (368)
--|..||+||..|...... .. ....+.+.|.+..+.+.-+++|+|||+||..+++....-- -.+.... -.
T Consensus 30 IFLRELISNAsDAidKlr~~al~~~~~~~~~~~~~I~i~~Dk~~kTLtI~DNGIGMT~~Ev~~~LgTIAkSgT~~---F~ 106 (623)
T COG0326 30 IFLRELISNASDAIDKLRFEALSDPELGEGDSDLRIRISFDKDNKTLTISDNGIGMTKDEVIENLGTIAKSGTKE---FL 106 (623)
T ss_pred HHHHHHHhhhHHHHHHHHHHhccCccccCCCCCceEEEEEcccCCEEEEEeCCCCCCHHHHHHHHHHhhhccHHH---HH
Confidence 3468999999999977431 11 1113356777776777778999999999999865443211 0010000 00
Q ss_pred ccccc---CCCCCCccccCHHHHHHHHH
Q 017683 311 TDLAA---DKGTMAGYGYGLPISRLYAR 335 (368)
Q Consensus 311 ~~~~~---~~~~~~g~GlGL~i~k~i~~ 335 (368)
...++ ...=.+..|+|+|-|-..++
T Consensus 107 ~~l~~~~~~~~lIGQFGVGFYSaFmVAd 134 (623)
T COG0326 107 ESLSEDQKDSDLIGQFGVGFYSAFMVAD 134 (623)
T ss_pred HHhccccccccccccccchhhheeeeee
Confidence 00000 11224568999998876654
No 92
>TIGR01058 parE_Gpos DNA topoisomerase IV, B subunit, Gram-positive. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation step of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=94.29 E-value=0.043 Score=55.53 Aligned_cols=50 Identities=36% Similarity=0.561 Sum_probs=39.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEEEEeCCCceEEEEeecCCCCCCCC
Q 017683 233 PSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSG 291 (368)
Q Consensus 233 ~~~l~~vl~NLl~NAi~~~~~~~~~~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~ 291 (368)
+.-|.+++..+|.||++-....+ ...|.|.+..++ .|+|.|||.|||.+.
T Consensus 32 ~~GL~hlv~EIvdNavDE~~ag~------~~~I~V~i~~dg---sitV~DnGrGIPv~~ 81 (637)
T TIGR01058 32 SKGLHHLVWEIVDNSVDEVLAGY------ADNITVTLHKDN---SITVQDDGRGIPTGI 81 (637)
T ss_pred cchhheehhhhhcchhhhhhcCC------CcEEEEEEcCCC---eEEEEECCCcccCcc
Confidence 45688999999999998654422 578999987543 699999999999753
No 93
>PF10090 DUF2328: Uncharacterized protein conserved in bacteria (DUF2328); InterPro: IPR018762 Members of this family of hypothetical bacterial proteins have no known function.
Probab=94.12 E-value=3 Score=35.24 Aligned_cols=99 Identities=15% Similarity=0.179 Sum_probs=68.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEEEEeCCCceEEEEeecCCCCCCCCcccccccccccCCCCCCcccc
Q 017683 233 PSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTD 312 (368)
Q Consensus 233 ~~~l~~vl~NLl~NAi~~~~~~~~~~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~~ 312 (368)
|...-+++.|++-=|..+.+. +|.|.|.+....+...++|.=+|+.+..+ +.++..+-.....
T Consensus 83 ~k~~vklllnl~l~a~~alpr--------GG~i~V~~~~~~~~~~~~v~a~G~~~~~~--~~~~~~L~g~~~~------- 145 (182)
T PF10090_consen 83 PKPEVKLLLNLLLCAEDALPR--------GGEITVSIEGSEGDGGWRVRAEGPRARLD--PDLWAALAGEDPE------- 145 (182)
T ss_pred CHHHHHHHHHHHHHHHhhcCC--------CCEEEEEEeccCCCceEEEEEeccccCCC--HHHHHHhcCCCCC-------
Confidence 344568999999999988887 89999998888888888888888765443 2333332221111
Q ss_pred cccCCCCCCccccCHHHHHHHHHHhCCeEEEEecCCCeeEEEEE
Q 017683 313 LAADKGTMAGYGYGLPISRLYARYFGGDLQIISMEGYGELNMFS 356 (368)
Q Consensus 313 ~~~~~~~~~g~GlGL~i~k~i~~~~gG~i~v~s~~g~Gt~f~i~ 356 (368)
........=-++...+++..|++|.++.. ++.++|.
T Consensus 146 -----~~l~~~~VQ~~~~~~la~~~G~~l~~~~~---~~~i~l~ 181 (182)
T PF10090_consen 146 -----EDLDPRNVQFYLLPLLAREAGRRLSVEAT---EDAIVLT 181 (182)
T ss_pred -----CCCCHHhHHHHHHHHHHHHcCCeEEEEec---CCEEEEe
Confidence 12334555678888999999999999864 3445543
No 94
>COG5381 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.04 E-value=0.048 Score=43.25 Aligned_cols=48 Identities=17% Similarity=0.050 Sum_probs=38.1
Q ss_pred hHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEEEEeCCCceEEEEeecCCCCCCCC
Q 017683 235 HLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSG 291 (368)
Q Consensus 235 ~l~~vl~NLl~NAi~~~~~~~~~~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~ 291 (368)
.+..+..+||.||+||... ++|.|...-....+.+.|++--++=...+
T Consensus 63 svgYl~NELiENAVKfra~---------geIvieasl~s~~f~~kvsN~vd~~t~~~ 110 (184)
T COG5381 63 SVGYLANELIENAVKFRAT---------GEIVIEASLYSHKFIFKVSNIVDLPTTID 110 (184)
T ss_pred hHHHHHHHHHHhhhcccCC---------CcEEEEEEeccceEEEEecccCCCccHHH
Confidence 4678889999999999865 89999998888888899887755543333
No 95
>KOG1979 consensus DNA mismatch repair protein - MLH1 family [Replication, recombination and repair]
Probab=93.37 E-value=0.045 Score=53.13 Aligned_cols=55 Identities=31% Similarity=0.440 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCCCEEEEEEeCCCceEEEEeecCCCCCCCCcccccccccccC
Q 017683 238 LMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTA 303 (368)
Q Consensus 238 ~vl~NLl~NAi~~~~~~~~~~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~ 303 (368)
-++-.|+.|+++|. ...|.|.+.. ++--.+.|+|||.||-.++++-+.++|-+.|
T Consensus 30 NAlKEliENSLDA~----------ST~I~V~vk~-GGLKLlQisDnG~GI~reDl~ilCeRftTSK 84 (694)
T KOG1979|consen 30 NALKELIENSLDAN----------STSIDVLVKD-GGLKLLQISDNGSGIRREDLPILCERFTTSK 84 (694)
T ss_pred HHHHHHHhccccCC----------CceEEEEEec-CCeEEEEEecCCCccchhhhHHHHHHhhhhh
Confidence 46778888888864 2456666543 3445678999999999999999999997766
No 96
>PTZ00108 DNA topoisomerase 2-like protein; Provisional
Probab=93.16 E-value=0.15 Score=55.58 Aligned_cols=53 Identities=19% Similarity=0.244 Sum_probs=38.5
Q ss_pred hHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEEEEeCCCceEEEEeecCCCCCCCC
Q 017683 235 HLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSG 291 (368)
Q Consensus 235 ~l~~vl~NLl~NAi~~~~~~~~~~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~ 291 (368)
-|..+|.++|.||+...... ...+....|.|.+..+.+ .|+|.|||.|||-+.
T Consensus 57 GL~ki~dEIldNAvDe~~r~--~~~g~~~~I~V~i~~d~g--~IsV~dnGrGIPv~~ 109 (1388)
T PTZ00108 57 GLYKIFDEILVNAADNKARD--KGGHRMTYIKVTIDEENG--EISVYNDGEGIPVQI 109 (1388)
T ss_pred hhhhhHHHHhhhhhhhhccc--CCCCCccEEEEEEeccCC--eEEEEecCCcccCCC
Confidence 48899999999999865420 000125788998876533 599999999999864
No 97
>KOG1978 consensus DNA mismatch repair protein - MLH2/PMS1/Pms2 family [Replication, recombination and repair]
Probab=92.89 E-value=0.081 Score=52.50 Aligned_cols=58 Identities=34% Similarity=0.339 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEEEEeCCCceEEEEeecCCCCCCCCcccccccccccCC
Q 017683 236 LHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTAR 304 (368)
Q Consensus 236 l~~vl~NLl~NAi~~~~~~~~~~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~ 304 (368)
+..++..|+.|++++. ...|.|.+..- +.=.|+|.|||.||++...+-+-.++++.+-
T Consensus 21 l~sAVKELvENSiDAG----------AT~I~I~~kdy-G~d~IEV~DNG~GI~~~n~~~l~lkh~TSKi 78 (672)
T KOG1978|consen 21 LVSAVKELVENSIDAG----------ATAIDIKVKDY-GSDSIEVSDNGSGISATDFEGLALKHTTSKI 78 (672)
T ss_pred HHHHHHHHHhcCcccC----------CceeeEecCCC-CcceEEEecCCCCCCccchhhhhhhhhhhcc
Confidence 6688999999999964 24677776543 3447999999999999998888888777664
No 98
>PHA02569 39 DNA topoisomerase II large subunit; Provisional
Probab=92.70 E-value=0.081 Score=53.24 Aligned_cols=51 Identities=27% Similarity=0.383 Sum_probs=36.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEEEEeCCCceEEEEeecCCCCCCCCc
Q 017683 235 HLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGL 292 (368)
Q Consensus 235 ~l~~vl~NLl~NAi~~~~~~~~~~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~ 292 (368)
-|.+++.++|.||++...... .++...|.|.+. ++ .|+|.|||.|||-+.-
T Consensus 45 GL~hi~~EIldNavDe~~~~~---~g~~~~I~V~i~-dg---sisV~dnGrGIPv~~h 95 (602)
T PHA02569 45 GLVKIIDEIIDNSVDEAIRTN---FKFANKIDVTIK-NN---QVTVSDNGRGIPQAMV 95 (602)
T ss_pred cceeeeehhhhhhhhhhhccC---CCCCcEEEEEEc-CC---EEEEEECCCcccCCcc
Confidence 477888888888888653311 012567888887 33 5999999999998753
No 99
>COG5385 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.64 E-value=4.9 Score=32.94 Aligned_cols=195 Identities=11% Similarity=0.113 Sum_probs=107.7
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHhhccCcccccCChHHHHHHHHHHHHhhHHHHHhHHHHhhhcCCCCCCCcccccccCC
Q 017683 113 MIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIGQHVELHNPNPPPHCIGYIDTKM 192 (368)
Q Consensus 113 ~l~~~~~~~~~~l~~l~~~~~el~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~li~~ll~l~~~~~~~~~~~~~~~~~ 192 (368)
+-+.+.||+-.|.+.|.++++.|..+-. .++....+. .+... ....+.|+|. ..+.-+..-..+
T Consensus 18 LcsRvCHDiISPvgAInnGLeLLdeg~a-------ddDAm~LIr---sSArn----as~rLqFaR~--AFGAsgSag~~i 81 (214)
T COG5385 18 LCSRVCHDIISPVGAINNGLELLDEGGA-------DDDAMDLIR---SSARN----ASVRLQFARL--AFGASGSAGASI 81 (214)
T ss_pred HHHHHHhhccCcHHHhhchhhhhccCCc-------cHHHHHHHH---HHhhh----HHHHHHHHHH--Hhcccccccccc
Confidence 5688999999999999999999988776 223322222 22222 1233444444 222222222455
Q ss_pred CHHHHHHHHHHHHHHHHHHhhCCCCceEEecCCCceeeecchhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEEEEeC
Q 017683 193 SPVQVARNASEHARCVCLREYGSAPDFNIYGDPSFTFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADG 272 (368)
Q Consensus 193 ~l~~li~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~d~~~l~~vl~NLl~NAi~~~~~~~~~~~~~~~~I~i~~~~~ 272 (368)
|-.+.-+-+... +... .+++...++..+ + |.-=...+.||+.=|--+.+. +|.+.+++...
T Consensus 82 Dtgeaek~A~~~----~a~e---kpe~~W~g~r~~-~---~Kn~vkllLNl~lia~~aiPr--------GG~~~vtle~~ 142 (214)
T COG5385 82 DTGEAEKAAQDF----FANE---KPELTWNGPRAI-L---PKNRVKLLLNLFLIAYGAIPR--------GGSLVVTLENP 142 (214)
T ss_pred cchhHHHHHHHH----Hhcc---CCcccccCChhh-c---CcchHHHHHHHHHHHcccCCC--------CCeeEEEeecC
Confidence 654442222222 2221 355555543321 1 122335678888777776666 79999999866
Q ss_pred CCceEEEEeecCCCCCCCCcccccccccccCCCCCCcccccccCCCCCCccccCHHHHHHHHHHhCCeEEEEecCCCeeE
Q 017683 273 LEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAADKGTMAGYGYGLPISRLYARYFGGDLQIISMEGYGEL 352 (368)
Q Consensus 273 ~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~~~~~~~~~~~g~GlGL~i~k~i~~~~gG~i~v~s~~g~Gt~ 352 (368)
+..-+++|.-.|+-+- ..+++.+-..-.+.. ....+.-.--|..-.+++.-|++|.++.... -..
T Consensus 143 e~d~rfsi~akG~m~R--vppk~lel~~G~~~e------------E~vdahsVQpyYt~lLa~eAgm~I~v~~~~e-~iv 207 (214)
T COG5385 143 ETDARFSIIAKGRMMR--VPPKFLELHSGEPPE------------EAVDAHSVQPYYTLLLAEEAGMTISVHATAE-RIV 207 (214)
T ss_pred CcCceEEEEecCcccc--CCHHHHhhhcCCCcc------------ccCCCccccHHHHHHHHHHcCCeEEEEeccc-eEE
Confidence 6666777777776432 122333322221111 1123444555666778899999999998654 345
Q ss_pred EEEEE
Q 017683 353 NMFSV 357 (368)
Q Consensus 353 f~i~l 357 (368)
|+-+.
T Consensus 208 ~~A~v 212 (214)
T COG5385 208 FTAWV 212 (214)
T ss_pred EEEec
Confidence 55443
No 100
>COG0187 GyrB Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [DNA replication, recombination, and repair]
Probab=92.19 E-value=0.054 Score=53.47 Aligned_cols=50 Identities=34% Similarity=0.503 Sum_probs=39.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEEEEeCCCceEEEEeecCCCCCCCCc
Q 017683 234 SHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGL 292 (368)
Q Consensus 234 ~~l~~vl~NLl~NAi~~~~~~~~~~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~ 292 (368)
.-|.+++.++++||++-.-..+ +..|.|.+..++ .|+|.|||.|||-+.-
T Consensus 35 ~GLhHlv~EVvDNsiDEalaG~------~~~I~V~l~~d~---sisV~DnGRGIPvdiH 84 (635)
T COG0187 35 RGLHHLVWEVVDNSIDEALAGY------ADRIDVTLHEDG---SISVEDNGRGIPVDIH 84 (635)
T ss_pred CcceeeEeEeeechHhHHhhCc------CcEEEEEEcCCC---eEEEEECCCCCccccC
Confidence 4588888888888888776544 678999997554 6999999999998763
No 101
>PLN03128 DNA topoisomerase 2; Provisional
Probab=91.98 E-value=0.27 Score=52.96 Aligned_cols=50 Identities=20% Similarity=0.237 Sum_probs=38.3
Q ss_pred hHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEEEEeCCCceEEEEeecCCCCCCCC
Q 017683 235 HLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSG 291 (368)
Q Consensus 235 ~l~~vl~NLl~NAi~~~~~~~~~~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~ 291 (368)
-|..++.++|.||++..... +....|.|.+..+++ .|+|.|||.|||-+.
T Consensus 52 GL~ki~dEIldNAvDe~~~~-----g~~~~I~V~i~~~dg--sIsV~DnGrGIPv~i 101 (1135)
T PLN03128 52 GLYKIFDEILVNAADNKQRD-----PSMDSLKVDIDVEQN--TISVYNNGKGIPVEI 101 (1135)
T ss_pred hHHHHHHHHHHHHHHHhhhc-----CCCcEEEEEEEcCCC--eEEEEecCccccCCC
Confidence 48899999999999866320 125789999876433 689999999999864
No 102
>PLN03237 DNA topoisomerase 2; Provisional
Probab=91.27 E-value=0.32 Score=53.14 Aligned_cols=50 Identities=20% Similarity=0.302 Sum_probs=38.1
Q ss_pred hHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEEEEeCCCceEEEEeecCCCCCCCC
Q 017683 235 HLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSG 291 (368)
Q Consensus 235 ~l~~vl~NLl~NAi~~~~~~~~~~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~ 291 (368)
-|..+|.++|.||+..... ++....|.|.+..+++ .|+|.|||.|||-+.
T Consensus 77 GL~kifdEIldNAvDe~~r-----~g~~~~I~V~I~~~~g--sIsV~DnGRGIPV~i 126 (1465)
T PLN03237 77 GLYKIFDEILVNAADNKQR-----DPKMDSLRVVIDVEQN--LISVYNNGDGVPVEI 126 (1465)
T ss_pred hhhhhHHHHhhhhHhHHhh-----cCCCCEEEEEEEcCCC--EEEEEecCccccCCC
Confidence 4888999999999986532 1125789999875544 589999999999864
No 103
>KOG1977 consensus DNA mismatch repair protein - MLH3 family [Replication, recombination and repair]
Probab=90.62 E-value=0.23 Score=49.58 Aligned_cols=59 Identities=29% Similarity=0.368 Sum_probs=49.1
Q ss_pred hHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEEEEeCCCceEEEEeecCCCCCCCCcccccccccccCCC
Q 017683 235 HLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARN 305 (368)
Q Consensus 235 ~l~~vl~NLl~NAi~~~~~~~~~~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~ 305 (368)
.|.+++.+|+-|++.+ +.-.|.+..+-..+.+.|.|+|.|+..+++..+-++||+.+-.
T Consensus 21 sla~~VeElv~NSiDA------------~At~V~v~V~~~t~sv~ViDdG~G~~rdDl~~lg~ry~TSK~h 79 (1142)
T KOG1977|consen 21 SLAQCVEELVLNSIDA------------EATCVAVRVNMETFSVQVIDDGFGMGRDDLEKLGNRYFTSKCH 79 (1142)
T ss_pred HHHHHHHHHHhhcccc------------CceEEEEEecCceeEEEEEecCCCccHHHHHHHHhhhhhhhce
Confidence 4889999999999996 3344555556677889999999999999999999999988754
No 104
>PTZ00109 DNA gyrase subunit b; Provisional
Probab=90.01 E-value=0.058 Score=55.78 Aligned_cols=50 Identities=26% Similarity=0.458 Sum_probs=38.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEEEEeCCCceEEEEeecCCCCCCCC
Q 017683 233 PSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSG 291 (368)
Q Consensus 233 ~~~l~~vl~NLl~NAi~~~~~~~~~~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~ 291 (368)
..-|.+++.++|+||++-....+ +..|.|.+..++ .|+|.|||.|||-+.
T Consensus 127 ~~GLhhLv~EIlDNSVDE~laG~------~~~I~V~i~~Dg---sItV~DnGRGIPvd~ 176 (903)
T PTZ00109 127 EKGLHQLLFEILDNSVDEYLAGE------CNKITVVLHKDG---SVEISDNGRGIPCDV 176 (903)
T ss_pred CCcceEEEEEEeeccchhhccCC------CcEEEEEEcCCC---eEEEEeCCccccccc
Confidence 34578888888999988654422 678999986643 699999999999754
No 105
>KOG0020 consensus Endoplasmic reticulum glucose-regulated protein (GRP94/endoplasmin), HSP90 family [Posttranslational modification, protein turnover, chaperones]
Probab=74.94 E-value=2.8 Score=40.39 Aligned_cols=55 Identities=22% Similarity=0.344 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHhh----cCC--CCCCCCEEEEEEeCCCceEEEEeecCCCCCCCCc
Q 017683 238 LMVFELVKNSLRAVEERY----MDS--DKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGL 292 (368)
Q Consensus 238 ~vl~NLl~NAi~~~~~~~----~~~--~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~ 292 (368)
.-|..||+||-.+...-. ... -+....+.|.+..+...-.+.|.|+|+||..+++
T Consensus 98 IFLRELISNASDAlDKIRllaLtd~~~L~~~~el~ikIK~Dke~klLhi~DtGiGMT~edL 158 (785)
T KOG0020|consen 98 IFLRELISNASDALDKIRLLALTDKDVLGETEELEIKIKADKEKKLLHITDTGIGMTREDL 158 (785)
T ss_pred HHHHHHHhhhhhhhhheeeeeccChhHhCcCcceEEEEeechhhCeeeEecccCCccHHHH
Confidence 346788999988875410 000 0113456777776777778999999999998754
No 106
>KOG0019 consensus Molecular chaperone (HSP90 family) [Posttranslational modification, protein turnover, chaperones]
Probab=74.41 E-value=3.2 Score=41.11 Aligned_cols=99 Identities=20% Similarity=0.316 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHHHHHHhhc-----CCCCCCCCEEEEEEeCCCceEEEEeecCCCCCCCCcccccccc-cccCCCCCCcc
Q 017683 237 HLMVFELVKNSLRAVEERYM-----DSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYL-YSTARNPLDEN 310 (368)
Q Consensus 237 ~~vl~NLl~NAi~~~~~~~~-----~~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f-~~~~~~~~~~~ 310 (368)
+.-+..||+||-.+...-+. .... ++...|.+..+.+.-.+.|.|+|+||..+++-.-...- .++.....+..
T Consensus 59 EvFlRELISNaSDAldKiRy~~lt~~~~~-~~~l~I~i~~nk~~~tlti~DtGIGMTk~dLvnnLGTIAkSGtK~Fmeal 137 (656)
T KOG0019|consen 59 EVFLRELISNASDALEKLRYLELKGDEKA-LPELEIRIITNKDKRTITIQDTGIGMTKEDLVNNLGTIAKSGSKAFLEAL 137 (656)
T ss_pred HHHHHhhhccccchHHHHHHHhhcCcccc-ccceeEEeccCCCcceEEEEecCCCcCHHHHHhhhhhhhhcccHHHHHHH
Confidence 45567899999888765221 1111 56778888878888899999999999987654322111 00000000000
Q ss_pred cccccCCCCCCccccCHHHHHHHHHH
Q 017683 311 TDLAADKGTMAGYGYGLPISRLYARY 336 (368)
Q Consensus 311 ~~~~~~~~~~~g~GlGL~i~k~i~~~ 336 (368)
+..|....-.+..|.|.|-+.-.++.
T Consensus 138 kea~ad~~~IGQFGvGFYSaylVAdk 163 (656)
T KOG0019|consen 138 KEAEAESNLIGQFGVGFYSAFMVADR 163 (656)
T ss_pred Hhcccchhhhhhcccchhhhhhhhhe
Confidence 00011222345689999888776654
No 107
>COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms]
Probab=66.95 E-value=21 Score=35.58 Aligned_cols=40 Identities=20% Similarity=0.399 Sum_probs=28.0
Q ss_pred HHHHHHHhccCcHHHHHHHH-HHHhhccCcccccCChHHHHHHHHH
Q 017683 113 MIKAIKVRHNNVVPMMALGL-QQLKKEMDPKIVYEDLDEIHQFLDR 157 (368)
Q Consensus 113 ~l~~~~~~~~~~l~~l~~~~-~el~~~l~~~~~~~~~~~~~~~l~~ 157 (368)
+++.-+. ..|++|+.++ ||+++|+. .+....++...++++
T Consensus 375 LvQA~kL---A~LGQmSA~iaHElNQPLa--aiRt~adna~~lLer 415 (603)
T COG4191 375 LVQAGKL---AALGQMSAGIAHELNQPLA--AIRTYADNARLLLER 415 (603)
T ss_pred HHHHHHH---HHHHHHHHHHHHHhcCcHH--HHHhHHHHHHHHHHc
Confidence 5555555 7889999999 99999998 444445555555544
No 108
>COG2865 Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen [Transcription]
Probab=62.40 E-value=89 Score=30.62 Aligned_cols=139 Identities=15% Similarity=0.071 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCCceEEecCCCceeeecchhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEEEEeCC
Q 017683 194 PVQVARNASEHARCVCLREYGSAPDFNIYGDPSFTFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGL 273 (368)
Q Consensus 194 l~~li~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~d~~~l~~vl~NLl~NAi~~~~~~~~~~~~~~~~I~i~~~~~~ 273 (368)
+-..++++++.++... .....+.+-....++-.| ..++..++.||+=|-.-.. . ++.|.|.+..+
T Consensus 238 l~~~v~~~i~fikrn~------~~~~~v~~l~r~~v~dyP---~~alREai~NAv~HRDYs~--~---~~~v~I~iydD- 302 (467)
T COG2865 238 LPEQVERAISFIKRNL------NVPYVVEGLRRVEVWDYP---LEALREAIINAVIHRDYSI--R---GRNVHIEIYDD- 302 (467)
T ss_pred HHHHHHHHHHHHHHhc------CCceeecceeEeecccCC---HHHHHHHHHHHHHhhcccc--C---CCceEEEEECC-
Confidence 4455566666554432 123333322222333333 3678899999998864311 1 34899999877
Q ss_pred CceEEEEeecCCCCCCCCcccccccccccCCCCCCcccccc---cCCCCCCccccCHHHHHHHHHHhCCe-EEEEecCCC
Q 017683 274 EDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLA---ADKGTMAGYGYGLPISRLYARYFGGD-LQIISMEGY 349 (368)
Q Consensus 274 ~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~~~~---~~~~~~~g~GlGL~i~k~i~~~~gG~-i~v~s~~g~ 349 (368)
+|.|++.|.-.+.=....++.. .+.... +..+ ....-....|-|+.-++.+++.||.. ..+...
T Consensus 303 ---RieI~NPGgl~~gi~~~~l~~~-~s~~RN-----p~LA~~l~~~~liE~~GSGi~rm~~~~~~~gl~~p~f~~~--- 370 (467)
T COG2865 303 ---RIEITNPGGLPPGITPEDLLKG-RSKSRN-----PVLAKVLRDMGLIEERGSGIRRMFDLMEENGLPKPEFEED--- 370 (467)
T ss_pred ---eEEEECCCCCCCCCChhHcccC-CCcccC-----HHHHHHHHHhhhHHHhCccHHHHHHHHHHcCCCCceeecc---
Confidence 6999988753333333333332 221111 0000 00111345788889999999999874 333322
Q ss_pred eeEEEEEEec
Q 017683 350 GELNMFSVLL 359 (368)
Q Consensus 350 Gt~f~i~lP~ 359 (368)
...|++.++.
T Consensus 371 ~~~~~~~~~~ 380 (467)
T COG2865 371 NDYVTVILHG 380 (467)
T ss_pred CCeEEEEEec
Confidence 2345555554
No 109
>KOG0355 consensus DNA topoisomerase type II [Chromatin structure and dynamics]
Probab=61.02 E-value=9.6 Score=39.30 Aligned_cols=50 Identities=20% Similarity=0.238 Sum_probs=35.5
Q ss_pred hHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEEEEeCCCceEEEEeecCCCCCCCCc
Q 017683 235 HLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGL 292 (368)
Q Consensus 235 ~l~~vl~NLl~NAi~~~~~~~~~~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~ 292 (368)
-|.+|+.+++.||.. -.. . .....|.+.+..+ .-.|+|.|||.|||-+..
T Consensus 53 Gl~ki~dEilvNaad-k~r-d----~~m~~i~v~i~~e--~~~isv~nnGkGIPv~~H 102 (842)
T KOG0355|consen 53 GLYKIFDEILVNAAD-KQR-D----PKMNTIKVTIDKE--KNEISVYNNGKGIPVTIH 102 (842)
T ss_pred cHHHHHHHHhhcccc-ccc-C----CCcceeEEEEccC--CCEEEEEeCCCcceeeec
Confidence 499999999999998 322 1 0134566666544 447999999999997643
No 110
>PF07492 Trehalase_Ca-bi: Neutral trehalase Ca2+ binding domain; InterPro: IPR011120 Neutral trehalases mobilise trehalose accumulated by fungal cells as a protective and storage carbohydrate. This family represents a calcium-binding domain similar to EF hand. Residues 97 and 108 in O42893 from SWISSPROT have been implicated in this interaction. It is thought that this domain may provide a general mechanism for regulating neutral trehalase activity in yeasts and filamentous fungi [].; GO: 0004555 alpha,alpha-trehalase activity, 0005509 calcium ion binding, 0005993 trehalose catabolic process, 0005737 cytoplasm
Probab=47.63 E-value=17 Score=20.58 Aligned_cols=15 Identities=27% Similarity=0.404 Sum_probs=11.6
Q ss_pred eCCCceEEEEeecCC
Q 017683 271 DGLEDVTIKVSDEGG 285 (368)
Q Consensus 271 ~~~~~~~i~V~D~G~ 285 (368)
..++...|.|.|+||
T Consensus 9 DTDgn~qITIeD~GP 23 (30)
T PF07492_consen 9 DTDGNFQITIEDTGP 23 (30)
T ss_pred ccCCCcEEEEecCCC
Confidence 345667899999997
No 111
>COG0813 DeoD Purine-nucleoside phosphorylase [Nucleotide transport and metabolism]
Probab=45.61 E-value=35 Score=29.63 Aligned_cols=55 Identities=20% Similarity=0.189 Sum_probs=39.5
Q ss_pred CCceeeecchhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEEEEeCCCceEEEEeecCCCCCC
Q 017683 225 PSFTFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPR 289 (368)
Q Consensus 225 ~~~~~~~d~~~l~~vl~NLl~NAi~~~~~~~~~~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~ 289 (368)
+.+.+++||.+-+.+-.|+++|++.++.-+ +-.-.+-.-++ -.++|.-.|-|||.
T Consensus 15 ~~VLmPGDPlRAK~iAetfLe~~~~vnevR--------~mlgfTGtYKG--k~iSvmg~GmGipS 69 (236)
T COG0813 15 EVVLMPGDPLRAKYIAETFLENAVCVNEVR--------GMLGFTGTYKG--KKISVMGHGMGIPS 69 (236)
T ss_pred ceeecCCCCchHHHHHHHHHhhhhhhhhhc--------chhcccceecC--cEEEEEEecCCCcc
Confidence 345688999999999999999999998652 22222222232 35778888999886
No 112
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=44.65 E-value=73 Score=21.45 Aligned_cols=47 Identities=11% Similarity=0.120 Sum_probs=31.6
Q ss_pred hHHHHHHHHHHHHHhccCcHHHHHHHHHHHhhccCcccccCChHHHHHHHHHHHHhhH
Q 017683 106 DERDFTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDRFYMSRI 163 (368)
Q Consensus 106 ~~~~~~~~l~~~~~~~~~~l~~l~~~~~el~~~l~~~~~~~~~~~~~~~l~~~~~~~~ 163 (368)
..+.+...++...||+.|-|..+.+.++.= ..+++.+++..+.....
T Consensus 8 ~~~~~~~~lR~~RHD~~NhLqvI~gllqlg-----------~~~~a~eYi~~~~~~~~ 54 (62)
T PF14689_consen 8 ELEELIDSLRAQRHDFLNHLQVIYGLLQLG-----------KYEEAKEYIKELSKDLQ 54 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT------------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHCC-----------CHHHHHHHHHHHHHHHH
Confidence 345566677888999999998888766542 24566777776554433
No 113
>PF07568 HisKA_2: Histidine kinase; InterPro: IPR011495 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This is the dimerisation and phosphoacceptor domain of a subfamily of histidine kinases. It shares sequence similarity with IPR003661 from INTERPRO and IPR011102 from INTERPRO. It is usually found adjacent to a C-terminal ATPase domain (IPR003594 from INTERPRO). This domain is found in a wide range of bacteria and also several archaea.
Probab=43.71 E-value=1.1e+02 Score=21.43 Aligned_cols=73 Identities=14% Similarity=0.109 Sum_probs=41.7
Q ss_pred HHHhccCcHHHHHHHHHHHhhccCcccccCChHHHHHHHHHHHHhhHHHHHhHHHHhhhcCCCCCCCcccccccCCCHHH
Q 017683 117 IKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIGQHVELHNPNPPPHCIGYIDTKMSPVQ 196 (368)
Q Consensus 117 ~~~~~~~~l~~l~~~~~el~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~li~~ll~l~~~~~~~~~~~~~~~~~~l~~ 196 (368)
+.|+.+|.|..+++.+..-..... .++.+..+..... ++..-..+.+.+.-+.. ...+++.+
T Consensus 2 ~~HRVkNnLq~i~sll~lq~~~~~-------~~e~~~~L~~~~~-RI~aia~vh~~L~~~~~----------~~~v~l~~ 63 (76)
T PF07568_consen 2 LHHRVKNNLQIISSLLRLQARRSE-------DPEAREALEDAQN-RIQAIALVHEQLYQSED----------LSEVDLRE 63 (76)
T ss_pred hHHhHHhHHHHHHHHHHHHHhcCC-------CHHHHHHHHHHHH-HHHHHHHHHHHHhcCCC----------CCeecHHH
Confidence 467888899888888754444333 2444555554322 11111234443332221 25789999
Q ss_pred HHHHHHHHHHH
Q 017683 197 VARNASEHARC 207 (368)
Q Consensus 197 li~~~~~~~~~ 207 (368)
.++.++..+..
T Consensus 64 yl~~L~~~l~~ 74 (76)
T PF07568_consen 64 YLEELCEDLRQ 74 (76)
T ss_pred HHHHHHHHHHH
Confidence 99998887653
No 114
>PF01106 NifU: NifU-like domain; InterPro: IPR001075 Iron-sulphur (FeS) clusters are important cofactors for numerous proteins involved in electron transfer, in redox and non-redox catalysis, in gene regulation, and as sensors of oxygen and iron. These functions depend on the various FeS cluster prosthetic groups, the most common being [2Fe-2S] and [4Fe-4S] []. FeS cluster assembly is a complex process involving the mobilisation of Fe and S atoms from storage sources, their assembly into [Fe-S] form, their transport to specific cellular locations, and their transfer to recipient apoproteins. So far, three FeS assembly machineries have been identified, which are capable of synthesising all types of [Fe-S] clusters: ISC (iron-sulphur cluster), SUF (sulphur assimilation), and NIF (nitrogen fixation) systems. The ISC system is conserved in eubacteria and eukaryotes (mitochondria), and has broad specificity, targeting general FeS proteins [, ]. It is encoded by the isc operon (iscRSUA-hscBA-fdx-iscX). IscS is a cysteine desulphurase, which obtains S from cysteine (converting it to alanine) and serves as a S donor for FeS cluster assembly. IscU and IscA act as scaffolds to accept S and Fe atoms, assembling clusters and transfering them to recipient apoproteins. HscA is a molecular chaperone and HscB is a co-chaperone. Fdx is a [2Fe-2S]-type ferredoxin. IscR is a transcription factor that regulates expression of the isc operon. IscX (also known as YfhJ) appears to interact with IscS and may function as an Fe donor during cluster assembly []. The SUF system is an alternative pathway to the ISC system that operates under iron starvation and oxidative stress. It is found in eubacteria, archaea and eukaryotes (plastids). The SUF system is encoded by the suf operon (sufABCDSE), and the six encoded proteins are arranged into two complexes (SufSE and SufBCD) and one protein (SufA). SufS is a pyridoxal-phosphate (PLP) protein displaying cysteine desulphurase activity. SufE acts as a scaffold protein that accepts S from SufS and donates it to SufA []. SufC is an ATPase with an unorthodox ATP-binding cassette (ABC)-like component. No specific functions have been assigned to SufB and SufD. SufA is homologous to IscA [], acting as a scaffold protein in which Fe and S atoms are assembled into [FeS] cluster forms, which can then easily be transferred to apoproteins targets. In the NIF system, NifS and NifU are required for the formation of metalloclusters of nitrogenase in Azotobacter vinelandii, and other organisms, as well as in the maturation of other FeS proteins. Nitrogenase catalyses the fixation of nitrogen. It contains a complex cluster, the FeMo cofactor, which contains molybdenum, Fe and S. NifS is a cysteine desulphurase. NifU binds one Fe atom at its N-terminal, assembling an FeS cluster that is transferred to nitrogenase apoproteins []. Nif proteins involved in the formation of FeS clusters can also be found in organisms that do not fix nitrogen []. This entry represents the C-terminal of NifU and homologous proteins. NifU contains two domains: an N-terminal (IPR002871 from INTERPRO) and a C-terminal domain []. These domains exist either together or on different polypeptides, both domains being found in organisms that do not fix nitrogen (e.g. yeast), so they have a broader significance in the cell than nitrogen fixation. ; GO: 0005506 iron ion binding, 0051536 iron-sulfur cluster binding, 0016226 iron-sulfur cluster assembly; PDB: 2JNV_A 2Z51_A 1TH5_A 1VEH_A 1XHJ_A.
Probab=38.37 E-value=38 Score=23.39 Aligned_cols=26 Identities=19% Similarity=0.406 Sum_probs=19.9
Q ss_pred HHHHHHHhCCeEEEEecCCCeeEEEEEE
Q 017683 330 SRLYARYFGGDLQIISMEGYGELNMFSV 357 (368)
Q Consensus 330 ~k~i~~~~gG~i~v~s~~g~Gt~f~i~l 357 (368)
+|-.++.|||++.+....+. ++++.|
T Consensus 8 IrP~L~~dGGdv~lv~v~~~--~V~V~l 33 (68)
T PF01106_consen 8 IRPYLQSDGGDVELVDVDDG--VVYVRL 33 (68)
T ss_dssp CHHHHHHTTEEEEEEEEETT--EEEEEE
T ss_pred hChHHHhcCCcEEEEEecCC--EEEEEE
Confidence 45677899999999988764 555655
No 115
>PF03891 DUF333: Domain of unknown function (DUF333); InterPro: IPR005590 This family consists of bacterial proteins whose function has not been characterised.
Probab=33.04 E-value=1.3e+02 Score=19.47 Aligned_cols=33 Identities=15% Similarity=0.115 Sum_probs=24.8
Q ss_pred HHHHHHHhCCeEEEEecCCCeeEEEEEEecccc
Q 017683 330 SRLYARYFGGDLQIISMEGYGELNMFSVLLYSY 362 (368)
Q Consensus 330 ~k~i~~~~gG~i~v~s~~g~Gt~f~i~lP~~~~ 362 (368)
+...+..+||++.+.+.++++..=.-.||-.+.
T Consensus 7 As~yC~~~GG~~~~~~~~~G~~~g~C~lpdG~~ 39 (50)
T PF03891_consen 7 ASVYCVEQGGKLEIRKQPDGSQVGYCVLPDGRR 39 (50)
T ss_pred HHHHHHHhCCEEEEEEcCCCCeEeEEECCCCCE
Confidence 456788999999998887754666677886543
No 116
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=30.48 E-value=3.5e+02 Score=25.09 Aligned_cols=132 Identities=17% Similarity=0.254 Sum_probs=69.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHhhCCCCceEEecCCC-cee-eecchhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEEE
Q 017683 192 MSPVQVARNASEHARCVCLREYGSAPDFNIYGDPS-FTF-PYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIV 269 (368)
Q Consensus 192 ~~l~~li~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~-~~d~~~l~~vl~NLl~NAi~~~~~~~~~~~~~~~~I~i~~ 269 (368)
.++.+++..+++.-..-+.-..|..+.+.++++-. +.. ..++..+...+..+++++-+..-+. .+.+..+.
T Consensus 3 m~i~~il~~a~~~~aSDiHL~~G~pp~~Ri~G~l~~~~~p~lt~~~~~~l~~~il~~~q~~~~~~-------~~E~Dfs~ 75 (353)
T COG2805 3 MDIEEILAEAVKNGASDLHLSAGLPPRIRIDGELRPINYPPLTAEDVQSLLREILNDDQRKILEE-------NGELDFSY 75 (353)
T ss_pred ccHHHHHHHHHhcCCCchhhccCCCceEEecCceeecCCCCCCHHHHHHHHHHHhCHHHHHHHHH-------hcceeEEE
Confidence 45666666665543333333334556666665432 122 2667888899999998887766553 25555555
Q ss_pred Ee-CCCceEEEEeecCCCCCCCCcccccccccccCCCCCCcccccccCCCCCCccccCHHHHHHHHHHhCCeEEEEecCC
Q 017683 270 AD-GLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAADKGTMAGYGYGLPISRLYARYFGGDLQIISMEG 348 (368)
Q Consensus 270 ~~-~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~~~~~~~~~~~g~GlGL~i~k~i~~~~gG~i~v~s~~g 348 (368)
.. +-.++++.+.....|..-- | +.=+. ........|+- .+++.+++...|-|-|.-..|
T Consensus 76 ~~~~~~RfRvN~f~qr~~~a~v-----l----R~Ip~----------~i~~~e~LglP-~i~~~~~~~~~GLILVTGpTG 135 (353)
T COG2805 76 TLPGVARFRVNAFKQRGGYALV-----L----RLIPS----------KIPTLEELGLP-PIVRELAESPRGLILVTGPTG 135 (353)
T ss_pred ecCCcceEEeehhhhcCCcEEE-----E----eccCc----------cCCCHHHcCCC-HHHHHHHhCCCceEEEeCCCC
Confidence 43 3445555555543332211 0 00000 00112233333 566777788888777776655
Q ss_pred Ce
Q 017683 349 YG 350 (368)
Q Consensus 349 ~G 350 (368)
.|
T Consensus 136 SG 137 (353)
T COG2805 136 SG 137 (353)
T ss_pred Cc
Confidence 54
No 117
>PF09182 PuR_N: Bacterial purine repressor, N-terminal; InterPro: IPR015265 The N-terminal domain of the bacterial purine repressor PuR is a winged-helix domain, a subdivision of the HTH structural family. It consists of a canonical arrangement of secondary structures: a1-b1-a2-T-a3-b2-W-b3, where a2-T-a3 is the HTH motif, a3 is the recognition helix, and W is the wing. The domain allows for recognition of a conserved CGAA sequence in the centre of a DNA PurBox, resulting in binding to the major groove of DNA []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1O57_B 1P4A_D.
Probab=28.14 E-value=1.3e+02 Score=21.05 Aligned_cols=28 Identities=18% Similarity=0.135 Sum_probs=21.2
Q ss_pred CHHHHHHHHHHhC-CeEEEEecCCCeeEE
Q 017683 326 GLPISRLYARYFG-GDLQIISMEGYGELN 353 (368)
Q Consensus 326 GL~i~k~i~~~~g-G~i~v~s~~g~Gt~f 353 (368)
-|.|+|...+..| |.|...+-..+|..|
T Consensus 40 Dl~iik~~~~~~g~G~ieT~~GaaGGv~y 68 (70)
T PF09182_consen 40 DLSIIKETFEKEGLGRIETVPGAAGGVRY 68 (70)
T ss_dssp HHHHHHHHHHHTTSEEEEEE-STT-EEEE
T ss_pred HHHHHHHHHHHcCCceEEEecCCCCCeEe
Confidence 4789999998888 888877777778777
No 118
>COG5436 Predicted integral membrane protein [Function unknown]
Probab=26.74 E-value=88 Score=25.48 Aligned_cols=92 Identities=12% Similarity=0.047 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCEEEEEEeCCCceEEEEeecCCCCCCCCcccccccccccCCCC-CCcccccccCCCCCC
Q 017683 243 LVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNP-LDENTDLAADKGTMA 321 (368)
Q Consensus 243 Ll~NAi~~~~~~~~~~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~-~~~~~~~~~~~~~~~ 321 (368)
|..-+++|.-+ .|++.|....+...+.++|.|.+. .. ||+-.... .++. -.-.-
T Consensus 66 l~~a~C~fdvs--------egpvri~a~~nvpyWSvsiyds~~-------nn----~fS~ND~ta~~gk------LDlVv 120 (182)
T COG5436 66 LLYAFCRFDVS--------EGPVRIEAKGNVPYWSVSIYDSNG-------NN----FFSINDRTAKGGK------LDLVV 120 (182)
T ss_pred hhhheeEeecc--------CCcEEEEecCCCceEEEEEEcCCC-------Cc----eEEeccccccCCc------cceEE
Confidence 44455666655 699999998888999999999975 23 33332210 0000 00000
Q ss_pred ccccCHHHHH-HHHHHhCCeEEEEecCCCeeE-EEEEEec
Q 017683 322 GYGYGLPISR-LYARYFGGDLQIISMEGYGEL-NMFSVLL 359 (368)
Q Consensus 322 g~GlGL~i~k-~i~~~~gG~i~v~s~~g~Gt~-f~i~lP~ 359 (368)
.+-+++...+ ..-+...+.|-++-..+.|.. ++.-.|.
T Consensus 121 atPiqmi~lrkd~pe~~t~aI~veakd~eG~avlR~fvPd 160 (182)
T COG5436 121 ATPIQMILLRKDGPEVLTDAIFVEAKDEEGFAVLRTFVPD 160 (182)
T ss_pred ecchhheeeccccchhccccEEEEecCCCceEEEEEecCc
Confidence 1224444333 444778899999888777753 4444454
No 119
>KOG4013 consensus Predicted Cu2+ homeostasis protein CutC [Inorganic ion transport and metabolism]
Probab=24.86 E-value=81 Score=26.81 Aligned_cols=25 Identities=24% Similarity=0.390 Sum_probs=20.6
Q ss_pred ccCHHHHHHHHHHhCCeEEEEecCCCe
Q 017683 324 GYGLPISRLYARYFGGDLQIISMEGYG 350 (368)
Q Consensus 324 GlGL~i~k~i~~~~gG~i~v~s~~g~G 350 (368)
-=|+++.+++++.|.|+|.+- +|.|
T Consensus 164 ldGv~~i~~lie~hkg~i~Vm--pG~G 188 (255)
T KOG4013|consen 164 LDGVYIIRELIELHKGKIDVM--PGCG 188 (255)
T ss_pred ccchHHHHHHHHHhcCCEEEe--cCCC
Confidence 348999999999999999875 4544
No 120
>KOG3438 consensus DNA-directed RNA polymerase, subunit L [Transcription]
Probab=24.44 E-value=1.5e+02 Score=22.33 Aligned_cols=37 Identities=22% Similarity=0.387 Sum_probs=26.7
Q ss_pred HHHHHHHHHHhhcCCCCCCCCEEEEEE----eCCCceEEEEeecCCCCC
Q 017683 244 VKNSLRAVEERYMDSDKVAPPIRIIVA----DGLEDVTIKVSDEGGGIP 288 (368)
Q Consensus 244 l~NAi~~~~~~~~~~~~~~~~I~i~~~----~~~~~~~i~V~D~G~Gi~ 288 (368)
|.||++|...+ ++.|++..+ ..++.+.|+|.-.| |.+
T Consensus 29 lgNalR~vI~k-------~peVefcGYtIPHPse~k~niRIQt~~-~~~ 69 (105)
T KOG3438|consen 29 LGNALRYVIMK-------NPEVEFCGYTIPHPSEDKINIRIQTRD-GDP 69 (105)
T ss_pred hhHHHHHHHhc-------CCceEEEeccCCCCchhhheEEEEecC-CCc
Confidence 78999999874 578888764 45567778887665 443
No 121
>PF00367 PTS_EIIB: phosphotransferase system, EIIB; InterPro: IPR018113 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred to enzyme-I (EI) of PTS which in turn transfers it to a phosphoryl carrier protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease which consists of at least three structurally distinct domains (IIA, IIB, and IIC) [] which can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA) carries the first permease-specific phoshorylation site, a histidine, which is phosphorylated by phospho-HPr. The second domain (IIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the permease. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate in a process catalyzed by the IIC domain; this process is coupled to the transmembrane transport of the sugar. This entry covers the phosphorylation site of EIIB domains. ; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity; PDB: 3IPJ_B 3BP3_A 1O2F_B 3BP8_C 1IBA_A.
Probab=21.09 E-value=92 Score=18.36 Aligned_cols=29 Identities=21% Similarity=0.242 Sum_probs=20.6
Q ss_pred HHHHHHHhCCeEEEEecCCCeeEEEEEEe
Q 017683 330 SRLYARYFGGDLQIISMEGYGELNMFSVL 358 (368)
Q Consensus 330 ~k~i~~~~gG~i~v~s~~g~Gt~f~i~lP 358 (368)
++.|++.+||.=.+.+...--|+.++.+.
T Consensus 1 A~~il~~lGG~~NI~~v~~C~TRLR~~v~ 29 (35)
T PF00367_consen 1 AKQILEALGGKENIKSVTNCATRLRFTVK 29 (35)
T ss_dssp HHHHHHHCTTCCCEEEEEE-SSEEEEEES
T ss_pred ChHHHHHhCCHHHHHHHhcCcceEEEEec
Confidence 57899999998877776554566666653
Done!