Query 017683
Match_columns 368
No_of_seqs 276 out of 2835
Neff 9.4
Searched_HMMs 29240
Date Mon Mar 25 03:17:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017683.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017683hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gkz_A [3-methyl-2-oxobutanoat 100.0 1.4E-48 4.8E-53 371.3 33.5 339 16-362 27-375 (388)
2 2q8g_A [pyruvate dehydrogenase 100.0 4.1E-44 1.4E-48 342.4 33.3 344 5-361 4-364 (407)
3 2e0a_A Pyruvate dehydrogenase 100.0 4.8E-43 1.6E-47 333.7 36.4 335 14-361 3-351 (394)
4 1y8o_A [pyruvate dehydrogenase 100.0 3.6E-43 1.2E-47 337.0 31.7 345 5-361 16-375 (419)
5 2btz_A Pyruvate dehydrogenase 100.0 5.4E-43 1.9E-47 333.4 31.2 334 14-361 3-351 (394)
6 2c2a_A Sensor histidine kinase 100.0 4.3E-35 1.5E-39 262.9 19.8 228 110-361 20-249 (258)
7 4ew8_A Sensor protein DIVL; si 100.0 8.6E-32 2.9E-36 242.6 21.2 218 110-362 40-258 (268)
8 3jz3_A Sensor protein QSEC; he 100.0 1.7E-32 5.8E-37 239.9 9.3 215 112-362 4-219 (222)
9 3d36_A Sporulation kinase B; G 100.0 2.3E-31 7.8E-36 236.1 15.7 218 106-362 10-227 (244)
10 3a0r_A Sensor protein; four he 100.0 3.3E-31 1.1E-35 247.5 15.8 218 105-361 127-346 (349)
11 4fpp_A Phosphotransferase; fou 100.0 2.1E-29 7E-34 224.6 16.4 196 113-358 49-246 (247)
12 1id0_A PHOQ histidine kinase; 99.9 4.4E-27 1.5E-31 193.4 16.2 146 190-362 2-147 (152)
13 3a0y_A Sensor protein; ATP-LID 99.9 2.4E-26 8.3E-31 188.7 16.3 145 189-361 3-149 (152)
14 1ysr_A Sensor-type histidine k 99.9 4.2E-27 1.4E-31 193.2 11.0 145 189-360 5-149 (150)
15 1bxd_A ENVZ(290-450), protein 99.9 7E-26 2.4E-30 188.2 12.4 144 189-361 7-151 (161)
16 3sl2_A Sensor histidine kinase 99.9 9.4E-26 3.2E-30 190.4 12.9 149 191-361 2-153 (177)
17 1b3q_A Protein (chemotaxis pro 99.9 5.6E-26 1.9E-30 214.5 11.5 209 110-361 10-249 (379)
18 1r62_A Nitrogen regulation pro 99.9 1.1E-25 3.6E-30 186.4 10.6 144 189-360 5-159 (160)
19 1i58_A Chemotaxis protein CHEA 99.9 2.1E-25 7.2E-30 190.3 7.7 155 190-359 3-188 (189)
20 3ehh_A Sensor kinase (YOCF pro 99.9 5.3E-23 1.8E-27 179.2 17.6 190 108-361 26-217 (218)
21 3ehg_A Sensor kinase (YOCF pro 99.9 5.4E-21 1.9E-25 152.4 13.0 124 192-361 2-127 (128)
22 3zxo_A Redox sensor histidine 99.8 6.8E-21 2.3E-25 151.8 9.1 123 190-360 3-128 (129)
23 3zxq_A Hypoxia sensor histidin 99.8 5.1E-20 1.7E-24 145.7 9.7 120 193-360 2-123 (124)
24 1th8_A Anti-sigma F factor; SP 99.8 5.5E-19 1.9E-23 143.8 8.1 107 231-362 35-141 (145)
25 1mu5_A Type II DNA topoisomera 99.7 2E-18 7E-23 165.6 9.2 116 228-360 25-148 (471)
26 2zbk_B Type 2 DNA topoisomeras 99.7 2.6E-18 8.9E-23 166.6 9.3 119 225-360 20-147 (530)
27 2q2e_B Type 2 DNA topoisomeras 99.6 8.5E-16 2.9E-20 151.0 7.3 120 228-360 30-154 (621)
28 1h7s_A PMS1 protein homolog 2; 98.9 4E-09 1.4E-13 97.9 8.2 83 235-333 34-117 (365)
29 3na3_A DNA mismatch repair pro 98.8 9.4E-09 3.2E-13 94.3 8.6 60 235-305 28-87 (348)
30 1b63_A MUTL; DNA mismatch repa 98.8 9E-09 3.1E-13 94.6 6.5 84 235-333 24-107 (333)
31 1kij_A DNA gyrase subunit B; t 98.7 3.6E-09 1.2E-13 99.1 3.3 86 231-335 32-125 (390)
32 3ke6_A Protein RV1364C/MT1410; 98.7 2E-08 6.8E-13 95.0 7.7 91 234-361 296-387 (399)
33 3h4l_A DNA mismatch repair pro 98.6 4.8E-08 1.6E-12 90.4 7.5 60 235-305 25-84 (367)
34 2wer_A ATP-dependent molecular 98.5 5.5E-08 1.9E-12 84.1 2.9 121 238-359 29-179 (220)
35 1ixm_A SPO0B, protein (sporula 98.4 3.4E-06 1.2E-10 70.9 13.0 156 102-301 13-171 (192)
36 1qy5_A Endoplasmin; GRP94, NEC 98.4 4.1E-08 1.4E-12 86.8 -0.5 122 238-359 31-185 (269)
37 1yc1_A HSP 86, heat shock prot 98.3 5.2E-07 1.8E-11 79.7 4.8 121 238-359 71-220 (264)
38 2ior_A Chaperone protein HTPG; 98.1 7.8E-07 2.7E-11 77.4 2.5 62 238-301 50-119 (235)
39 1s16_A Topoisomerase IV subuni 98.0 6.8E-06 2.3E-10 76.8 7.0 83 237-335 33-124 (390)
40 2gqp_A Endoplasmin; GRP94, HSP 98.0 2E-06 6.7E-11 74.9 2.0 60 238-299 35-102 (236)
41 3t0h_A Heat shock protein HSP 97.9 2.7E-06 9.3E-11 73.3 1.7 62 238-299 35-102 (228)
42 3o0i_A HSP90AA1 protein; HSP90 97.8 4E-06 1.4E-10 73.2 0.7 121 238-359 63-212 (256)
43 4duh_A DNA gyrase subunit B; s 97.7 6.9E-05 2.4E-09 64.1 7.6 86 234-334 34-127 (220)
44 1ei1_A DNA gyrase B, GYRB; ATP 97.7 4.7E-05 1.6E-09 71.1 7.0 86 235-335 34-127 (391)
45 3peh_A Endoplasmin homolog; st 97.7 1E-05 3.5E-10 71.4 2.3 122 238-359 49-200 (281)
46 1y4s_A Chaperone protein HTPG; 97.7 5.1E-05 1.7E-09 73.8 6.3 120 238-359 30-182 (559)
47 3nmq_A Heat shock protein HSP 97.6 8.7E-06 3E-10 70.3 0.3 121 238-359 42-191 (239)
48 2cg9_A ATP-dependent molecular 97.6 3.5E-05 1.2E-09 76.3 4.5 119 238-359 29-179 (677)
49 2o1u_A Endoplasmin; GRP94, HSP 97.5 3E-05 1E-09 76.7 1.8 126 229-359 42-202 (666)
50 2ioq_A Chaperone protein HTPG; 97.4 3.9E-05 1.3E-09 75.5 1.4 121 237-359 29-182 (624)
51 4emv_A DNA topoisomerase IV, B 97.4 0.00022 7.4E-09 61.2 5.7 87 233-334 38-131 (226)
52 3ied_A Heat shock protein; HSP 97.3 3.6E-05 1.2E-09 66.6 0.5 69 265-334 119-189 (272)
53 3cwv_A DNA gyrase, B subunit, 97.3 0.00014 4.6E-09 67.4 4.2 52 233-296 28-79 (369)
54 1zxm_A TOPO IIA ATPase, DNA to 97.3 0.00048 1.6E-08 64.3 7.4 86 234-333 51-145 (400)
55 3fv5_A DNA topoisomerase 4 sub 97.3 0.00028 9.6E-09 59.6 5.2 48 237-293 19-66 (201)
56 3ttz_A DNA gyrase subunit B; p 97.2 0.00058 2E-08 57.4 6.0 50 233-291 29-78 (198)
57 1pvg_A DNA topoisomerase II; G 97.1 0.0015 5.1E-08 61.3 8.3 86 235-334 64-158 (418)
58 3lnu_A Topoisomerase IV subuni 96.9 0.00077 2.6E-08 62.9 5.1 48 237-293 52-99 (408)
59 3zcc_A HAMP, osmolarity sensor 94.8 0.32 1.1E-05 35.6 10.3 79 78-176 36-114 (114)
60 4gfh_A DNA topoisomerase 2; to 94.6 0.087 3E-06 55.8 8.6 88 235-335 59-154 (1177)
61 3zrx_A AF1503 protein, osmolar 90.5 3 0.0001 30.0 10.2 81 77-177 35-115 (115)
62 3lmm_A Uncharacterized protein 72.3 7.2 0.00025 38.1 6.9 105 237-361 298-409 (583)
63 3zcc_A HAMP, osmolarity sensor 30.1 58 0.002 22.7 4.2 32 109-140 45-76 (114)
64 4avr_A PA4485; unknown functio 25.5 47 0.0016 23.7 2.6 27 262-288 39-65 (95)
65 1xhj_A Nitrogen fixation prote 23.5 1.1E+02 0.0036 21.5 4.2 27 329-357 18-44 (88)
66 3ghg_A Fibrinogen alpha chain; 20.5 5.5E+02 0.019 24.3 10.9 45 150-198 135-179 (562)
No 1
>1gkz_A [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase; transferase, mitochondrial protein kinase, potassium; HET: ADP; 2.2A {Rattus norvegicus} SCOP: a.29.5.1 d.122.1.4 PDB: 1gjv_A 1gkx_A*
Probab=100.00 E-value=1.4e-48 Score=371.31 Aligned_cols=339 Identities=32% Similarity=0.612 Sum_probs=286.1
Q ss_pred HHHHHhhcCCCCCCCHHHHHhcCCCCChHHHHHHHHHHHHHhHHHHHHHHHHHhcCCccccCChhHHHHHHHHHHHHHHh
Q 017683 16 EEVGRWGCMKQTGVSLRYMMEFGSKPTDKNLLISAQFLHKELPIRIARRAIELETLPYGLSEKPAVLKVRDWYLDSFRDL 95 (368)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~l~~rv~~r~~~l~~~~~~l~~~~~i~~~~~~~~~~~~~l 95 (368)
..|.+|+.+++.|+|+++|++||..++...++.++++++++++.|+++|+++++.+|+.+..+|.+..++++|..+++++
T Consensus 27 ~~i~~~~~~~~~~~sl~~l~~~g~~~~~~~ll~s~~~l~~elp~rla~ri~~l~~lp~~~~~~~~i~~~~~~~~~~~~~l 106 (388)
T 1gkz_A 27 SAIDVVAEKPSVRLTPTMMLYSGRSQDGSHLLKSGRYLQQELPVRIAHRIKGFRSLPFIIGCNPTILHVHELYIRAFQKL 106 (388)
T ss_dssp -----------CEESSSCEECCCCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHcCCCCCcCHHHHHHhCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHhhhcCchHHHHHHHHHHHHHHH
Confidence 35678999999999999999999998888999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCchhHHHHHHHHHHHHHhccCcHHHHHHHHHHHhhccCcccccCChHHHHHHHHHHHHhhHHHHHhHHHHhhh
Q 017683 96 RSFPDIRSTSDERDFTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIGQHVEL 175 (368)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~l~~~~~el~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~li~~ll~l 175 (368)
......+..+..+++.+++..+.|++++|+..+..++.++..... ..+..+++++.+..++.+++.++++++++
T Consensus 107 ~~~~~~~~~~~~~~~~~~l~~i~helrtpL~~i~~g~~~l~~~~~------~~~~~~~~l~~i~~~~~~l~~li~~ll~l 180 (388)
T 1gkz_A 107 TDFPPIKDQADEAQYCQLVRQLLDDHKDVVTLLAEGLRESRKHIE------DEKLVRYFLDKTLTSRLGIRMLATHHLAL 180 (388)
T ss_dssp HHSCCCCSHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHSSSSCC------STTHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HhCcCCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhcc------CcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998888888889999999999999999999999988887765433 35678999999999999999999999999
Q ss_pred cCCCCCCCcccccccCCCHHHHHHHHHHHHHHHHHHhhCCCCceEEecCCCceeeecchhHHHHHHHHHHHHHHHHHHhh
Q 017683 176 HNPNPPPHCIGYIDTKMSPVQVARNASEHARCVCLREYGSAPDFNIYGDPSFTFPYVPSHLHLMVFELVKNSLRAVEERY 255 (368)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~d~~~l~~vl~NLl~NAi~~~~~~~ 255 (368)
++. ..+..+...+++++.+++++++..+...+..+|+..+.+.+..+.+..+.+|+.+|.+||.|||+||++|+.+.+
T Consensus 181 ~~~--~~~~~~~~~~~~~l~~li~~~~~~~~~~~~~~~g~~~~i~i~~~~~~~~~~~~~~L~~il~NLl~NAik~~~~~~ 258 (388)
T 1gkz_A 181 HED--KPDFVGIICTRLSPKKIIEKWVDFARRLCEHKYGNAPRVRINGHVAARFPFIPMPLDYILPELLKNAMRATMESH 258 (388)
T ss_dssp TSC--CTTEETTEEEEECHHHHHHHHHHHHHHHHHHHHSCCCCEEEEESTTCCEEECCHHHHHHHHHHHHHHHHHHHHTC
T ss_pred hcc--CCCccceecCCCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEccCCCceeecHHHHHHHHHHHHHHHHHHhhccc
Confidence 998 667777788999999999999999999999998888899998888888999999999999999999999998832
Q ss_pred cCCCCCCCCEEEEEEeCCCceEEEEeecCCCCCCCCcccccccccccCCCCCCc--cc-cc-------ccCCCCCCcccc
Q 017683 256 MDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDE--NT-DL-------AADKGTMAGYGY 325 (368)
Q Consensus 256 ~~~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~--~~-~~-------~~~~~~~~g~Gl 325 (368)
...+...++|.|.+...++.+.|.|+|+|+|||++.++++|++||+++...... .. .+ +...+...|+||
T Consensus 259 ~~~~~~~~~I~I~~~~~~~~v~i~V~D~G~GI~~~~~~~iF~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~GL 338 (388)
T 1gkz_A 259 LDTPYNVPDVVITIANNDVDLIIRISDRGGGIAHKDLDRVMDYHFTTAEASTQDPRISPLFGHLDMHSGGQSGPMHGFGF 338 (388)
T ss_dssp TTCTTSCCCEEEEEEECSSEEEEEEECCSCCCCTTTTTTTTSTTCCCC-------------------------CCSCSSC
T ss_pred cCCCCCCCCEEEEEEeCCCEEEEEEEEeCCCcCHHHHHHhcCcccccCCCcccccccccchhhcccccccCCCCcCCccC
Confidence 111111248999999999999999999999999999999999999998641000 00 00 001223469999
Q ss_pred CHHHHHHHHHHhCCeEEEEecCCCeeEEEEEEecccc
Q 017683 326 GLPISRLYARYFGGDLQIISMEGYGELNMFSVLLYSY 362 (368)
Q Consensus 326 GL~i~k~i~~~~gG~i~v~s~~g~Gt~f~i~lP~~~~ 362 (368)
||+|||.++++|||+|++.|.+|.||+|+|+||....
T Consensus 339 GL~i~r~i~~~~gG~i~v~s~~g~Gt~f~i~LP~~~~ 375 (388)
T 1gkz_A 339 GLPTSRAYAEYLGGSLQLQSLQGIGTDVYLRLRHIDG 375 (388)
T ss_dssp HHHHHHHHHHHTTCEEEEEEETTTEEEEEEEEECSSS
T ss_pred CHHHHHHHHHHhCCEEEEEecCCCcEEEEEEecCCCC
Confidence 9999999999999999999999999999999998754
No 2
>2q8g_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; GHKL ATPase/kinase family, pyruvate dehydrogenase complex, mitochondrial kinase; HET: AZX; 1.90A {Homo sapiens} PDB: 2q8f_A* 2q8h_A
Probab=100.00 E-value=4.1e-44 Score=342.44 Aligned_cols=344 Identities=36% Similarity=0.601 Sum_probs=271.3
Q ss_pred hhhhHhhHHHHHHHHHhhcCCCCCCCHHHHHhcC-CCCChHHHHHHHHHHHHHhHHHHHHHHHHHhcCCccccCChhHHH
Q 017683 5 KLSETFSKSLIEEVGRWGCMKQTGVSLRYMMEFG-SKPTDKNLLISAQFLHKELPIRIARRAIELETLPYGLSEKPAVLK 83 (368)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~l~~~~~~~~~~l~~rv~~r~~~l~~~~~~l~~~~~i~~ 83 (368)
+|--++++++...|.+|+.++++|+|+++|++|| ..+++.+ ++.|+++++|.|+++++++++.+++.+..++.+.+
T Consensus 4 ~~~~~~~~~~~~~i~~~~~~~~~~~sl~~~~~~g~~~~~~~~---s~~fl~~elPirla~~~~~i~~l~~~~~~~~~~~e 80 (407)
T 2q8g_A 4 GSSPASERGVPGQVDFYARFSPSPLSMKQFLDFGSVNACEKT---SFMFLRQELPVRLANIMKEISLLPDNLLRTPSVQL 80 (407)
T ss_dssp --------CHHHHHHHHHTSCCCCCBHHHHHHHHHTTCCHHH---HHHHHHHHHHHHHHHHHHHHTTSCHHHHTSHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHcCCCCCCCHHHHHHhCCCCCCHhH---HHHHHHHHHHHHHHHHHHHHHhCchhhhcChhHHH
Confidence 3556788899999999999999999999999999 6777764 78999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCCchhHHHHHHHHHHHHHhccC-----cHHHHHHHHHHHhhccCcccccCChHHHHHHHHHH
Q 017683 84 VRDWYLDSFRDLRSFPDIRSTSDERDFTQMIKAIKVRHNN-----VVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDRF 158 (368)
Q Consensus 84 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~l~~l~~~~~el~~~l~~~~~~~~~~~~~~~l~~~ 158 (368)
+..+|..+|..+....+. ..++.+....+.... ||+++ |++.+.+.++.+...... ....+.++.+++.+
T Consensus 81 v~~~l~~s~n~m~~~~~~-~~~~~~~~~~f~~~~-HeLrt~~~~vPLt~i~g~~ell~~~~~~---~~~~~~~~~~l~~~ 155 (407)
T 2q8g_A 81 VQSWYIQSLQELLDFKDK-SAEDAKAIYDFTDTV-IRIRNRHNDVIPTMAQGVIEYKESFGVD---PVTSQNVQYFLDRF 155 (407)
T ss_dssp HHHHHHHHHHHHHTTSSS-CTTCHHHHHHHHHHH-HHHHHHTTTHHHHHHHHHHHHHHHC--C---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhchhc-CccchHHHHHHHHHH-HHHHhhhccchHHHHHHHHHHHHhhccC---ccCHHHHHHHHHHH
Confidence 999999999999886442 222333344555555 99999 999998888744432110 01245678889987
Q ss_pred HHhhHHHHHhHHHHhhhcCCCC-----CCCcccccccCCCHHHHHHHHHHHHHHHHHHhhCCCCceEEec------CCCc
Q 017683 159 YMSRIGIRMLIGQHVELHNPNP-----PPHCIGYIDTKMSPVQVARNASEHARCVCLREYGSAPDFNIYG------DPSF 227 (368)
Q Consensus 159 ~~~~~~~~~li~~ll~l~~~~~-----~~~~~~~~~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~~~~------~~~~ 227 (368)
+..+...++++++++++++... ..+..+...+++++.+++++++..+...+..+|+..+.+.+.. +.+.
T Consensus 156 ~~~~~~~rlli~~ll~l~~~e~~~~~~~~~~~~~~~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~ 235 (407)
T 2q8g_A 156 YMSRISIRMLLNQHSLLFGGKGKGSPSHRKHIGSINPNCNVLEVIKDGYENARRLCDLYYINSPELELEELNAKSPGQPI 235 (407)
T ss_dssp HHHHHHHHHHHHHHHHHHC----------CCBTTBEEEEEHHHHHHHHHHHHHHHHHHHHSCCCCEEEEEEESSSTTSCC
T ss_pred HHHHHHHHHHHHHHHHHhccccccCCCCccccccccCCCCHHHHHHHHHHHHHHHHHHhcCCCCceEEEEeecCCCCCCe
Confidence 7776666779999999998732 1225667778999999999999999999999887777777664 5567
Q ss_pred eeeecchhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEEEEeCCCceEEEEeecCCCCCCCCcccccccccccCCCCC
Q 017683 228 TFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPL 307 (368)
Q Consensus 228 ~~~~d~~~l~~vl~NLl~NAi~~~~~~~~~~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~ 307 (368)
.+.+|+.+|.+||.|||+||++|+.+.+... ...++|.|.+...++.+.|.|+|+|+|||++.+++||++||+++..+.
T Consensus 236 ~v~~d~~~L~~il~NLl~NAik~t~~~~~~~-~~~~~I~I~~~~~~~~v~i~V~D~G~GI~~e~~~~if~~f~~~~~~~~ 314 (407)
T 2q8g_A 236 QVVYVPSHLYHMVFELFKNAMRATMEHHANR-GVYPPIQVHVTLGNEDLTVKMSDRGGGVPLRKIDRLFNYMYSTAPRPR 314 (407)
T ss_dssp EEEECHHHHHHHHHHHHHHHHHHHHHHSTTT-CCCCCEEEEEEECSSEEEEEEEECSCCCCHHHHGGGGCTTTTCCCCCC
T ss_pred EEEEcHHHHHHHHHHHHHHHHHHHhhccccC-CCCCCEEEEEEeCCCEEEEEEEecCCCCCHHHHHHHhCccccCCCCCC
Confidence 8999999999999999999999998842100 112489999999999999999999999999999999999999886410
Q ss_pred CcccccccCCCCCCccccCHHHHHHHHHHhCCeEEEEecCCCeeEEEEEEeccc
Q 017683 308 DENTDLAADKGTMAGYGYGLPISRLYARYFGGDLQIISMEGYGELNMFSVLLYS 361 (368)
Q Consensus 308 ~~~~~~~~~~~~~~g~GlGL~i~k~i~~~~gG~i~v~s~~g~Gt~f~i~lP~~~ 361 (368)
.+ ++......|+||||+|||.+++.|||+|++.|.+|+||+|+|.||...
T Consensus 315 ~~----~~~~~~~~G~GLGL~Ivr~i~~~~gG~i~v~s~~g~Gt~f~i~LP~~~ 364 (407)
T 2q8g_A 315 VE----TSRAVPLAGFGYGLPISRLYAQYFQGDLKLYSLEGYGTDAVIYIKALS 364 (407)
T ss_dssp SS----CCSCCCSSCTTCHHHHHHHHHHHTTCEEEEEEETTTEEEEEEEEESSG
T ss_pred cc----ccCCCCCCCcCCCHHHHHHHHHHhCCEEEEEEcCCCceEEEEEECCCC
Confidence 00 001233479999999999999999999999999999999999999865
No 3
>2e0a_A Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP-binding, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: ANP; 1.86A {Homo sapiens} PDB: 2zdx_A* 2zdy_A* 2zkj_A* 3d2r_A*
Probab=100.00 E-value=4.8e-43 Score=333.69 Aligned_cols=335 Identities=36% Similarity=0.633 Sum_probs=261.4
Q ss_pred HHHHHHHhhcCCCCCCCHHHHHhcC-CCCChHHHHHHHHHHHHHhHHHHHHHHHHHhcCCccccCChhHHHHHHHHHHHH
Q 017683 14 LIEEVGRWGCMKQTGVSLRYMMEFG-SKPTDKNLLISAQFLHKELPIRIARRAIELETLPYGLSEKPAVLKVRDWYLDSF 92 (368)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~l~~~~~~~~~~l~~rv~~r~~~l~~~~~~l~~~~~i~~~~~~~~~~~ 92 (368)
+...|.+||.+++.|+|+++|++|| ...++.+ ++.+++++|+.|+++++++++.+|+.+..++.+.++.++|..+|
T Consensus 3 ~~~~~~~~~~~~~~~~sl~~l~~fg~~~~~~~~---s~~~l~~el~~rla~~~~~l~~l~~~l~~~~~~~ev~~~l~~s~ 79 (394)
T 2e0a_A 3 VPREVEHFSRYSPSPLSMKQLLDFGSENACERT---SFAFLRQELPVRLANILKEIDILPTQLVNTSSVQLVKSWYIQSL 79 (394)
T ss_dssp CCHHHHHHTTSCCCCCBHHHHHHTTC---CHHH---HHHHHHHHHHHHHHHHHHHHTTSCHHHHTSHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHcCCCCCCcHHHHHHhCCCCCCHHH---HHHHHHHHHHHHHHHHHHHHHhccHhhhcCchHHHHHHHHHHHH
Confidence 3457889999999999999999999 5666654 88999999999999999999999999999999999999999999
Q ss_pred HHhhcCCCCCCchhHHHHHHHHHHHHHhccC-----cHHHHHHHHHHHhhccCcccccCChHHHHHHHHHHHHhhHHHHH
Q 017683 93 RDLRSFPDIRSTSDERDFTQMIKAIKVRHNN-----VVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDRFYMSRIGIRM 167 (368)
Q Consensus 93 ~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~l~~l~~~~~el~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 167 (368)
.++....+.. .++.+... .+..+.||+++ |++.+.+.++.+. ... .-....+.++.+++++...+...++
T Consensus 80 ~~l~~~~~~~-~~~~~~~~-~~~~~~HeLrtpl~~vPlt~i~g~~el~~-~~~--~~~~~~~~~~~~l~~~~i~~~~~rl 154 (394)
T 2e0a_A 80 MDLVEFHEKS-PDDQKALS-DFVDTLIKVRNRHHNVVPTMAQGIIEYKD-ACT--VDPVTNQNLQYFLDRFYMNRISTRM 154 (394)
T ss_dssp HHHHTTSSSC-TTCHHHHH-HHHHHHHHHHHHHTTHHHHHHHHHHHHHT-TSC--CCTTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccccC-ccchHHHH-HHHHHHHHHHhhhhhhHHHHHHHHHHHHh-hhc--cCcccHHHHHHHHHHHHHHHHHHHH
Confidence 9998865432 22222222 34556699999 8887788777443 221 0122356788999964444444444
Q ss_pred hHHHHhh-hcCC-CCCCCcccccccCCCHHHHHHHHHHHHHHHHHHhhCCCCceEEec------CCCceeeecchhHHHH
Q 017683 168 LIGQHVE-LHNP-NPPPHCIGYIDTKMSPVQVARNASEHARCVCLREYGSAPDFNIYG------DPSFTFPYVPSHLHLM 239 (368)
Q Consensus 168 li~~ll~-l~~~-~~~~~~~~~~~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~~~~------~~~~~~~~d~~~l~~v 239 (368)
+++++++ +++. .......+...+++++.+++++++..+...+..+|+..+.+.+.. ..+..+.+|+.+|.+|
T Consensus 155 li~~lL~l~~~~~~~~~~~~g~i~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~v~~d~~~L~~i 234 (394)
T 2e0a_A 155 LMNQHILIFSDSQTGNPSHIGSIDPNCDVVAVVQDAFECSRMLCDQYYLSSPELKLTQVNGKFPDQPIHIVYVPSHLHHM 234 (394)
T ss_dssp HHHHHHHHHCSSCCCCTTSBTTBEEEEEHHHHHHHHHHHHHHHHHHHHSCCCCEEEEEEESSSTTSCCEEEECHHHHHHH
T ss_pred HHHHHHHHhhcccCCCCCccccccCCCCHHHHHHHHHHHHHHHHHHhcCCCCceEEEEeccCCCCCCeEEEEcHHHHHHH
Confidence 9999998 5553 112223333447899999999999999999999888777777765 5567899999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCCCEEEEEEeCCCceEEEEeecCCCCCCCCcccccccccccCCCCCCcccccccCCCC
Q 017683 240 VFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAADKGT 319 (368)
Q Consensus 240 l~NLl~NAi~~~~~~~~~~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~~~~~~~~~ 319 (368)
|.|||+||++|+.+..... ...++|.|.+...++.+.|.|+|+|+|||++.++++|++||+++..+..+ +.+.+.
T Consensus 235 l~NLl~NAik~~~~~~~~~-~~~~~I~I~~~~~~~~v~i~V~D~G~GI~~~~~~~if~~f~~~~~~~~~~----~~~~~~ 309 (394)
T 2e0a_A 235 LFELFKNAMRATVEHQENQ-PSLTPIEVIVVLGKEDLTIKISDRGGGVPLRIIDRLFSYTYSTAPTPVMD----NSRNAP 309 (394)
T ss_dssp HHHHHHHHHHHHHHHTTTS-SSCCCEEEEEEECSSEEEEEEEECSCCCCGGGHHHHTSTTCCSSCCC----------CCC
T ss_pred HHHHHHHHHHHHHhccccc-CCCCCEEEEEEeCCCEEEEEEEeCCCCcCHHHHHHHhCcCccCCCCCCcC----cCCCCC
Confidence 9999999999998842100 11247999999999999999999999999999999999999987531000 001233
Q ss_pred CCccccCHHHHHHHHHHhCCeEEEEecCCCeeEEEEEEeccc
Q 017683 320 MAGYGYGLPISRLYARYFGGDLQIISMEGYGELNMFSVLLYS 361 (368)
Q Consensus 320 ~~g~GlGL~i~k~i~~~~gG~i~v~s~~g~Gt~f~i~lP~~~ 361 (368)
..|+||||+|||.+++.|||+|++.|.+|+||+|+|.||+..
T Consensus 310 ~~G~GLGL~i~~~i~~~~gG~i~v~s~~g~Gt~f~i~lP~~~ 351 (394)
T 2e0a_A 310 LAGFGYGLPISRLYAKYFQGDLNLYSLSGYGTDAIIYLKALS 351 (394)
T ss_dssp SSCSSCHHHHHHHHHHHTTCEEEEEEETTTEEEEEEEEESSG
T ss_pred CCCcccCHHHHHHHHHHhCCEEEEEecCCccEEEEEEeCCCC
Confidence 569999999999999999999999999999999999999865
No 4
>1y8o_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: a.29.5.1 d.122.1.4 PDB: 1y8n_A* 1y8p_A* 2pnr_A* 2q8i_A*
Probab=100.00 E-value=3.6e-43 Score=336.97 Aligned_cols=345 Identities=36% Similarity=0.613 Sum_probs=257.9
Q ss_pred hhhhHhhHHHHHHHHHhhcCCCCCCCHHHHHhcC-CCCChHHHHHHHHHHHHHhHHHHHHHHHHHhcCCccccCChhHHH
Q 017683 5 KLSETFSKSLIEEVGRWGCMKQTGVSLRYMMEFG-SKPTDKNLLISAQFLHKELPIRIARRAIELETLPYGLSEKPAVLK 83 (368)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~l~~~~~~~~~~l~~rv~~r~~~l~~~~~~l~~~~~i~~ 83 (368)
-++|.+...+...|.+|+.+++.|+|+++|+.|| ...... .++.+++.++|.|+++++++++.+++.+..+|.+..
T Consensus 16 ~~~~~~~~~~~~~i~~y~~~~~~~~sl~~l~~~g~~~~~~~---~s~~~l~~elPirLa~~~~~i~~~~~~~~~~~~~~~ 92 (419)
T 1y8o_A 16 NLYFQGKQPVPKQIERYSRFSPSPLSIKQFLDFGRDNACEK---TSYMFLRKELPVRLANTMREVNLLPDNLLNRPSVGL 92 (419)
T ss_dssp ----------CHHHHHHHHSCCCCCBHHHHHHHHHHTCCHH---HHHHHHHHHHHHHHHHHHHHHTTSCHHHHTSHHHHH
T ss_pred cccchhHHHHHHHHHHHhcCCCCCCCHHHHHHhcCCCCCHH---HHHHHHHHHhHHHHHHHHHHHHhCCHhhhcChhHHH
Confidence 3689999999999999999999999999999998 555553 478899999999999999999999999989999999
Q ss_pred HHHHHHHHHHHhhcCCCCCCchhHHHHHHHHHHHHHhccCcHH-----HHHHHHHHHhhccCcccccCChHHHHHHHHHH
Q 017683 84 VRDWYLDSFRDLRSFPDIRSTSDERDFTQMIKAIKVRHNNVVP-----MMALGLQQLKKEMDPKIVYEDLDEIHQFLDRF 158 (368)
Q Consensus 84 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~-----~l~~~~~el~~~l~~~~~~~~~~~~~~~l~~~ 158 (368)
...+|..+|.++....+.. .++.+...++.. +.||+++|++ .+.+.++ +....... ....+.++.+++.+
T Consensus 93 e~~~l~~sf~~m~~~~~~~-~~~~~~~~~f~~-~~HeLrtPL~~vi~~~i~g~~e-ll~~~~~~--~~~~~~~~~~l~~i 167 (419)
T 1y8o_A 93 VQSWYMQSFLELLEYENKS-PEDPQVLDNFLQ-VLIKVRNRHNDVVPTMAQGVIE-YKEKFGFD--PFISTNIQYFLDRF 167 (419)
T ss_dssp HHHHHHHHHHHHHGGGGCC-TTCHHHHHHHHH-HHHHHHHHGGGHHHHHHHHHHH-HHHHHCCC--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhcC-ccchHHHHHHHH-HHHHHhcchhhhHHHHHHHHHH-HHHHhccC--cccHHHHHHHHHHH
Confidence 9999999999988754322 222233344544 4599999998 4444445 33322100 01246788899998
Q ss_pred HHhhHHHHHhHHHHhhhcCCC---CCCCcccccccCCCHHHHHHHHHHHHHHHHHHhhCCCCceEEec------CCCcee
Q 017683 159 YMSRIGIRMLIGQHVELHNPN---PPPHCIGYIDTKMSPVQVARNASEHARCVCLREYGSAPDFNIYG------DPSFTF 229 (368)
Q Consensus 159 ~~~~~~~~~li~~ll~l~~~~---~~~~~~~~~~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~~~~------~~~~~~ 229 (368)
..++...++++++++.+++.. .....++...+++++.+++++++..++..+...++....+.+.. +.++.+
T Consensus 168 ~~~~~~~rlli~~lL~l~~~~~~~~~~~~~~~~~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~v 247 (419)
T 1y8o_A 168 YTNRISFRMLINQHTLLFGGDTNPVHPKHIGSIDPTCNVADVVKDAYETAKMLCEQYYLVAPELEVEEFNAKAPDKPIQV 247 (419)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCSSCSSTTSBTTBEEEEEHHHHHHHHHHHHHHHHHHHHSCCCCEEEEEEETTSTTSCCEE
T ss_pred HHHHHHHHHHHHHHHHHhcccccCCCCCccccccCcCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeeecCCCCCCeEE
Confidence 888777777999998776542 12334445568999999999999999999988766556666654 566789
Q ss_pred eecchhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEEEEeCCCceEEEEeecCCCCCCCCcccccccccccCCCCCCc
Q 017683 230 PYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDE 309 (368)
Q Consensus 230 ~~d~~~l~~vl~NLl~NAi~~~~~~~~~~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~ 309 (368)
.+|+.+|.+||.|||+||++|+.+.+.......++|.|.+...++.+.|.|+|+|+|||++.+++||++||+++..+...
T Consensus 248 ~~d~~~L~~vl~NLl~NAik~~~~~~~~~~~~~~~I~I~~~~~~~~v~I~V~D~G~GI~~e~l~~iF~~f~~~~~~~~~~ 327 (419)
T 1y8o_A 248 VYVPSHLFHMLFELFKNSMRATVELYEDRKEGYPAVKTLVTLGKEDLSIKISDLGGGVPLRKIDRLFNYMYSTAPRPSLE 327 (419)
T ss_dssp EECHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCCCEEEEEEECSSEEEEEEEECSCCCCHHHHGGGGCTTTC--------
T ss_pred EEcHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCEEEEEEeCCCEEEEEEEECCCCCCHHHHHHHhCcccccCCCCCcc
Confidence 99999999999999999999998843221111248999999999999999999999999999999999999987530000
Q ss_pred ccccccCCCCCCccccCHHHHHHHHHHhCCeEEEEecCCCeeEEEEEEeccc
Q 017683 310 NTDLAADKGTMAGYGYGLPISRLYARYFGGDLQIISMEGYGELNMFSVLLYS 361 (368)
Q Consensus 310 ~~~~~~~~~~~~g~GlGL~i~k~i~~~~gG~i~v~s~~g~Gt~f~i~lP~~~ 361 (368)
+++.....|+||||+|||.+++.|||+|++.|.+|+||+|+|.||...
T Consensus 328 ----~~~~~~~~G~GLGL~I~k~iv~~~gG~I~v~s~~g~Gt~f~i~LP~~~ 375 (419)
T 1y8o_A 328 ----PTRAAPLAGFGYGLPISRLYARYFQGDLKLYSMEGVGTDAVIYLKALS 375 (419)
T ss_dssp ---------CC--CTTHHHHHHHHHHHTTCEEEEEEETTTEEEEEEEEESCG
T ss_pred ----ccCCCCcCCeecCHHHHHHHHHHhCCEEEEEecCCCCEEEEEEecCCC
Confidence 001233569999999999999999999999999999999999999875
No 5
>2btz_A Pyruvate dehydrogenase kinase isoenzyme 2; GHKL motif regulation, transferase; 2.2A {Homo sapiens} PDB: 2bu2_A* 2bu5_A* 2bu6_A* 2bu7_A* 2bu8_A* 3crk_A* 1jm6_A* 3crl_A*
Probab=100.00 E-value=5.4e-43 Score=333.41 Aligned_cols=334 Identities=38% Similarity=0.632 Sum_probs=257.2
Q ss_pred HHHHHHHhhcCCCCCCCHHHHHhcC-CCCChHHHHHHHHHHHHHhHHHHHHHHHHHhcCCccccCChhHHHHHHHHHHHH
Q 017683 14 LIEEVGRWGCMKQTGVSLRYMMEFG-SKPTDKNLLISAQFLHKELPIRIARRAIELETLPYGLSEKPAVLKVRDWYLDSF 92 (368)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~l~~~~~~~~~~l~~rv~~r~~~l~~~~~~l~~~~~i~~~~~~~~~~~ 92 (368)
+...+.+|+.+++.|+|+++|++|| .+.++.+ ++.+++++|+.|+++++++++.+++.+..++.+.++.++|..++
T Consensus 3 ~~~~~~~~~~~~~~~~sl~~~~~fg~~~~~~~~---s~~~l~~el~~rla~~~~~l~~l~~~l~~~~~~~ev~~~~~~~~ 79 (394)
T 2btz_A 3 APKYIEHFSKFSPSPLSMKQFLDFGSSNACEKT---SFTFLRQELPVRLANIMKEINLLPDRVLSTPSVQLVQSWYVQSL 79 (394)
T ss_dssp HHHHHHHHTTSCCCCCBHHHHHHHHSSSCCHHH---HHHHHHHHHHHHHHHHHHHHTTSCHHHHHSHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhCCCCCCcCHHHHHHhcCCCCCHHH---HHHHHHHHHHHHHHHHHHHHHhCChhhhcCccHHHHHHHHHHHH
Confidence 5677899999999999999999999 6666654 78999999999999999999999999999999999999999999
Q ss_pred HHhhcCCCCCCchhHHHHHHHHHHHHHhccC-----cHHHHHHHHHHHhhccCcccccCChHHHHHHHHHHHHhhHHHHH
Q 017683 93 RDLRSFPDIRSTSDERDFTQMIKAIKVRHNN-----VVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDRFYMSRIGIRM 167 (368)
Q Consensus 93 ~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~l~~l~~~~~el~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 167 (368)
+++....+...... +. .+++..+.||+++ |++.+.+.++.+...... ....+.++.+++++...+...++
T Consensus 80 ~~l~~~~~~~~~~~-~~-~~~~~~~~HeLrtpl~~vPlt~i~g~~ell~~~~~~---~~~~~~~~~~l~~~~i~~~~~rl 154 (394)
T 2btz_A 80 LDIMEFLDKDPEDH-RT-LSQFTDALVTIRNRHNDVVPTMAQGVLEYKDTYGDD---PVSNQNIQYFLDRFYLSRISIRM 154 (394)
T ss_dssp HHHHTTTTCCTTST-TT-THHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccccCccch-HH-HHHHHHHHHHHHhhcchhHHHHHHHHHHHHHhhcCC---cccHHHHHHHHHHHHHhhhHHHH
Confidence 99988654322111 11 1245567799999 888888887766543210 11245677788876566566666
Q ss_pred hHHHHhhhcCCCC---CCCcccccccCCCHHHHHHHHHHHHHHHHHHhhCCCCceEEec------CCCceeeecchhHHH
Q 017683 168 LIGQHVELHNPNP---PPHCIGYIDTKMSPVQVARNASEHARCVCLREYGSAPDFNIYG------DPSFTFPYVPSHLHL 238 (368)
Q Consensus 168 li~~ll~l~~~~~---~~~~~~~~~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~~~~------~~~~~~~~d~~~l~~ 238 (368)
++++++++++... .....+...+++++.+++++++..+...+...|+....+.+.. +.+..+.+|+.+|.+
T Consensus 155 li~~ll~l~~~~~~~~~~~~~g~i~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~v~~d~~~L~~ 234 (394)
T 2btz_A 155 LINQHTLIFDGSTNPAHPKHIGSIDPNCNVSEVVKDAYDMAKLLCDKYYMASPDLEIQEINAANSKQPIHMVYVPSHLYH 234 (394)
T ss_dssp HHHHHHHHCC--------CCBTTBEEEEEHHHHHHHHHHHHHHHHHHHHSCCCCEEEEEEETTSTTSCCEEEECHHHHHH
T ss_pred HHHHHHHHhcccccCCCCcccceecCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEEEeccCCCCCCeEEEecHHHHHH
Confidence 9999999998732 1223333447899999999999999999988666555666653 556789999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCCCEEEEEEeCCCceEEEEeecCCCCCCCCcccccccccccCCCCCCcccccccCCC
Q 017683 239 MVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAADKG 318 (368)
Q Consensus 239 vl~NLl~NAi~~~~~~~~~~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~~~~~~~~ 318 (368)
||.|||+||++|+.+..... ...++|.|.+...++.+.|.|+|+|+|||++.++++|++||+++..+.. +.+..
T Consensus 235 il~NLl~NAik~~~~~~~~~-~~~~~I~I~~~~~~~~v~i~V~D~G~GI~~~~~~~iF~~f~~~~~~~~~-----~~~~~ 308 (394)
T 2btz_A 235 MLFELFKNAMRATVESHESS-LILPPIKVMVALGEEDLSIKMSDRGGGVPLRKIERLFSYMYSTAPTPQP-----GTGGT 308 (394)
T ss_dssp HHHHHHHHHHHHHHHTTTTC-SCCCCEEEEEEECSSEEEEEEEECSCCCCHHHHHHHTCTTTTCCC--------------
T ss_pred HHHHHHHHHHHHhhhccccC-CCCCCEEEEEEeCCCEEEEEEEeCCCCCCHHHHHHHhcccccCCCCCCc-----ccCCC
Confidence 99999999999998831000 0124799999999999999999999999999999999999998753000 00022
Q ss_pred CCCccccCHHHHHHHHHHhCCeEEEEecCCCeeEEEEEEeccc
Q 017683 319 TMAGYGYGLPISRLYARYFGGDLQIISMEGYGELNMFSVLLYS 361 (368)
Q Consensus 319 ~~~g~GlGL~i~k~i~~~~gG~i~v~s~~g~Gt~f~i~lP~~~ 361 (368)
...|+||||+|||.+++.|||+|++.|.+|+||+|+|.||...
T Consensus 309 ~~~G~GLGL~i~~~i~~~~gG~i~v~s~~g~Gt~f~i~lP~~~ 351 (394)
T 2btz_A 309 PLAGFGYGLPISRLYAKYFQGDLQLFSMEGFGTDAVIYLKALS 351 (394)
T ss_dssp -----CCHHHHHHHHHHHTTCEEEEEEETTTEEEEEEEEESST
T ss_pred CCCCccCCHHHHHHHHHHhCCEEEEEecCCCceEEEEEecCCC
Confidence 3469999999999999999999999999999999999999865
No 6
>2c2a_A Sensor histidine kinase; phosphotransfer, PHOQ, selenomethionyl MAD, two-component systems, transferase; HET: ADP; 1.9A {Thermotoga maritima} SCOP: a.30.2.1 d.122.1.3 PDB: 3dge_A*
Probab=100.00 E-value=4.3e-35 Score=262.92 Aligned_cols=228 Identities=15% Similarity=0.210 Sum_probs=182.5
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHhhccCcccccCChHHHHHHHHHHHHhhHHHHHhHHHHhhhcCCCCCCCcccccc
Q 017683 110 FTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIGQHVELHNPNPPPHCIGYID 189 (368)
Q Consensus 110 ~~~~l~~~~~~~~~~l~~l~~~~~el~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~li~~ll~l~~~~~~~~~~~~~~ 189 (368)
..+++..++||+++||+.+.+.++.+..... ....+....+++.+.....++..++++++++++. ..+......
T Consensus 20 ~~~~~~~isHelrtPL~~i~~~~~~l~~~~~----~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~--~~~~~~~~~ 93 (258)
T 2c2a_A 20 KTEFIANISHELRTPLTAIKAYAETIYNSLG----ELDLSTLKEFLEVIIDQSNHLENLLNELLDFSRL--ERKSLQINR 93 (258)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHHHHTGG----GCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHTCCCCCC
T ss_pred HHHHHHHhhhhhcCCHHHHHHHHHHHHhhcc----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hCCCccCcc
Confidence 3568999999999999999999987765443 1123456778888888888899999999999876 223333445
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHhhCCCCceEEec--CCCceeeecchhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEE
Q 017683 190 TKMSPVQVARNASEHARCVCLREYGSAPDFNIYG--DPSFTFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRI 267 (368)
Q Consensus 190 ~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~~~~--~~~~~~~~d~~~l~~vl~NLl~NAi~~~~~~~~~~~~~~~~I~i 267 (368)
+++++.+++++++..+...+..+ .+.+.+.. +.+..+.+|+..|.+||.||+.||++|++... ..+.|.|
T Consensus 94 ~~~~l~~~~~~~~~~~~~~~~~~---~i~~~~~~~~~~~~~~~~d~~~l~~il~NLl~NAik~~~~~~-----~~~~i~i 165 (258)
T 2c2a_A 94 EKVDLCDLVESAVNAIKEFASSH---NVNVLFESNVPCPVEAYIDPTRIRQVLLNLLNNGVKYSKKDA-----PDKYVKV 165 (258)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHHT---TCEEEEEESSCSCCEEEECHHHHHHHHHHHHHHHHHTCCTTC-----TTCEEEE
T ss_pred ceecHHHHHHHHHHHHHHHHHHc---CcEEEeecCCCCCceEEeCHHHHHHHHHHHHHHHHhcCcCCC-----CceeEEE
Confidence 78999999999999998887776 55666554 34567889999999999999999999986411 0255888
Q ss_pred EEEeCCCceEEEEeecCCCCCCCCcccccccccccCCCCCCcccccccCCCCCCccccCHHHHHHHHHHhCCeEEEEecC
Q 017683 268 IVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAADKGTMAGYGYGLPISRLYARYFGGDLQIISME 347 (368)
Q Consensus 268 ~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~~~~~~~~~~~g~GlGL~i~k~i~~~~gG~i~v~s~~ 347 (368)
.+...++.+.|.|.|+|+|||++.++++|+|||+++.. ......|+||||+||+.+++.|||+|++.|.+
T Consensus 166 ~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~----------~~~~~~G~GLGL~i~~~iv~~~gG~i~v~s~~ 235 (258)
T 2c2a_A 166 ILDEKDGGVLIIVEDNGIGIPDHAKDRIFEQFYRVDSS----------LTYEVPGTGLGLAITKEIVELHGGRIWVESEV 235 (258)
T ss_dssp EEEEETTEEEEEEEECSSCCCGGGTTGGGSTTCCCC-------------------CCCTHHHHHHHHHHTTCEEEEEEET
T ss_pred EEecCCCeEEEEEEecCCCCCHHHHHhhccccccCCCC----------CCCCCCCcchHHHHHHHHHHHcCCEEEEEecC
Confidence 88888889999999999999999999999999998754 22334699999999999999999999999999
Q ss_pred CCeeEEEEEEeccc
Q 017683 348 GYGELNMFSVLLYS 361 (368)
Q Consensus 348 g~Gt~f~i~lP~~~ 361 (368)
|+||+|+|.||...
T Consensus 236 ~~Gt~f~i~lP~~~ 249 (258)
T 2c2a_A 236 GKGSRFFVWIPKDR 249 (258)
T ss_dssp TTEEEEEEEEECCC
T ss_pred CCCcEEEEEeeCCC
Confidence 99999999999864
No 7
>4ew8_A Sensor protein DIVL; signal transduction, two-component regulatory system, hiska GHKL domain, structural genomics; 2.50A {Caulobacter crescentus}
Probab=100.00 E-value=8.6e-32 Score=242.55 Aligned_cols=218 Identities=15% Similarity=0.136 Sum_probs=189.0
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHhhccCcccccCChHHHHHHHHHHHHhhHHHHHhHHHHhhhcCCCCCCCcccccc
Q 017683 110 FTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIGQHVELHNPNPPPHCIGYID 189 (368)
Q Consensus 110 ~~~~l~~~~~~~~~~l~~l~~~~~el~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~li~~ll~l~~~~~~~~~~~~~~ 189 (368)
..+++..+.|++++||..+.+.++.+..... ..+....+++.+.....++..++++++++++. ..+......
T Consensus 40 ~~~~~~~l~Helr~pL~~i~~~~~~l~~~~~------~~~~~~~~l~~i~~~~~~l~~~i~~l~~~~~~--~~~~~~~~~ 111 (268)
T 4ew8_A 40 KRDFVGNVSYELRTPLTTIIGYSELLERADG------ISERGRNHVAAVRAAATQLARSIDDVLDMAQI--DAGEMALEI 111 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTCSS------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HTTCCCCCC
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhhccC------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hcCCcceee
Confidence 3458999999999999999999988875432 34677888888888888899999999999875 233333445
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHhhCCCCceEEecCCCc-eeeecchhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEE
Q 017683 190 TKMSPVQVARNASEHARCVCLREYGSAPDFNIYGDPSF-TFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRII 268 (368)
Q Consensus 190 ~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~d~~~l~~vl~NLl~NAi~~~~~~~~~~~~~~~~I~i~ 268 (368)
.++++.++++.++..+...+..+ .+.+.+..+.+. .+.+|+..|.+||.||+.||++|+.. ++.|.|.
T Consensus 112 ~~~~l~~~l~~~~~~~~~~~~~~---~i~i~~~~~~~~~~v~~d~~~l~~il~nLl~NA~~~~~~--------~~~I~i~ 180 (268)
T 4ew8_A 112 EDIRVSDLLLNAQERALKDAQLG---GVTLAVECEEDVGLIRGDGKRLAQTLDHLVENALRQTPP--------GGRVTLS 180 (268)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHHT---TCEEEEECCTTSCEEEECHHHHHHHHHHHHHHHHHHSCT--------TCEEEEE
T ss_pred eeccHHHHHHHHHHHHHhhhhcc---CceEEEEcCCCCceEecCHHHHHHHHHHHHHHHHHhCCC--------CCEEEEE
Confidence 78999999999999998887776 678888777665 78899999999999999999999865 5899999
Q ss_pred EEeCCCceEEEEeecCCCCCCCCcccccccccccCCCCCCcccccccCCCCCCccccCHHHHHHHHHHhCCeEEEEecCC
Q 017683 269 VADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAADKGTMAGYGYGLPISRLYARYFGGDLQIISMEG 348 (368)
Q Consensus 269 ~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~~~~~~~~~~~g~GlGL~i~k~i~~~~gG~i~v~s~~g 348 (368)
+...++.+.|.|.|+|+||+++.++++|++||+++.. |+|+||++|+.+++.|||.|++.|.++
T Consensus 181 ~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~~~~~~~~----------------g~GlGL~i~~~~~~~~gG~i~i~s~~~ 244 (268)
T 4ew8_A 181 ARRALGEVRLDVSDTGRGVPFHVQAHIFDRFVGRDRG----------------GPGLGLALVKALVELHGGWVALESEPG 244 (268)
T ss_dssp EEECSSEEEEEEEESSCCCCHHHHTTTTSTTCCCSSC----------------CCTTHHHHHHHHHHHTTCEEEEEECTT
T ss_pred EEecCCEEEEEEEcCCCCCCHHHHHHHHHHHhcCCCC----------------CCcccHHHHHHHHHHcCCEEEEEecCC
Confidence 9999999999999999999999999999999987755 999999999999999999999999999
Q ss_pred CeeEEEEEEecccc
Q 017683 349 YGELNMFSVLLYSY 362 (368)
Q Consensus 349 ~Gt~f~i~lP~~~~ 362 (368)
.||+|+|.||....
T Consensus 245 ~Gt~~~i~lP~~~~ 258 (268)
T 4ew8_A 245 NGSTFTCHLPETQQ 258 (268)
T ss_dssp SCEEEEEEEECCC-
T ss_pred CCEEEEEEecCCCC
Confidence 99999999998653
No 8
>3jz3_A Sensor protein QSEC; helix-turn-helix, kinase domain, ATP-binding, cell inner MEM cell membrane, kinase, membrane, nucleotide-binding; 2.50A {Escherichia coli}
Probab=99.97 E-value=1.7e-32 Score=239.89 Aligned_cols=215 Identities=15% Similarity=0.117 Sum_probs=125.3
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHhhccCcccccCChHHHHHHHHHHHHhhHHHHHhHHHHhhhcCCCCCCCcccccccC
Q 017683 112 QMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIGQHVELHNPNPPPHCIGYIDTK 191 (368)
Q Consensus 112 ~~l~~~~~~~~~~l~~l~~~~~el~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~li~~ll~l~~~~~~~~~~~~~~~~ 191 (368)
+++..+.||+++||+.+.+.++.+..... ..+....+++.+..+..++..++++++++++. ..........+
T Consensus 4 ~~~~~~~Helr~pL~~i~~~~~~l~~~~~------~~~~~~~~l~~i~~~~~~l~~~i~~l~~~~~~--~~~~~~~~~~~ 75 (222)
T 3jz3_A 4 RFTSDAAHELRSPLTALKVQTEVAQLSDD------DPQARKKALLQLHSGIDRATRLVDQLLTLSRL--DSLDNLQDVAE 75 (222)
T ss_dssp ------------------------------------------CEECCC-CHHHHHHHHHHHHHHHTC--CCSTTSTTCEE
T ss_pred HHHHHHhHHhcCcHHHHHHHHHHHhhccC------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hccCCccCccc
Confidence 48889999999999999888776654322 12233344444445556677789999999987 33344445578
Q ss_pred CCHHHHHHHHHHHHHHHHHHhhCCCCceEEecCCC-ceeeecchhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEEEE
Q 017683 192 MSPVQVARNASEHARCVCLREYGSAPDFNIYGDPS-FTFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVA 270 (368)
Q Consensus 192 ~~l~~li~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~d~~~l~~vl~NLl~NAi~~~~~~~~~~~~~~~~I~i~~~ 270 (368)
+++.++++.++..+...+..+ .+.+.+..+.+ ..+.+|+..|.+||.||+.||++|+++ ++.|.|.+.
T Consensus 76 ~~l~~~~~~~~~~~~~~~~~~---~i~~~~~~~~~~~~~~~d~~~l~~il~nLl~NAi~~~~~--------~~~i~i~~~ 144 (222)
T 3jz3_A 76 IPLEDLLQSSVMDIYHTAQQA---KIDVRLTLNAHSIKRTGQPLLLSLLVRNLLDNAVRYSPQ--------GSVVDVTLN 144 (222)
T ss_dssp EEHHHHHHHHHHHHHHHHHHT---TCEEEEEESSCSCEEEECHHHHHHHHHHHHHHHHHTCCT--------TCEEEEEEC
T ss_pred CCHHHHHHHHHHHHHHHHHHh---CCeEEEeeCCcceEEecCHHHHHHHHHHHHHHHHHcCCC--------CCeEEEEEc
Confidence 999999999999998888776 66777765544 678899999999999999999999865 567888775
Q ss_pred eCCCceEEEEeecCCCCCCCCcccccccccccCCCCCCcccccccCCCCCCccccCHHHHHHHHHHhCCeEEEEecCCCe
Q 017683 271 DGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAADKGTMAGYGYGLPISRLYARYFGGDLQIISMEGYG 350 (368)
Q Consensus 271 ~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~~~~~~~~~~~g~GlGL~i~k~i~~~~gG~i~v~s~~g~G 350 (368)
..+ |.|.|+|+|||++.++++|++||+++.. ...|+|+||++|+.+++.|||+|++.|.+++|
T Consensus 145 ~~~----i~V~D~G~Gi~~~~~~~if~~f~~~~~~-------------~~~g~GlGL~i~~~i~~~~gG~i~i~s~~~~G 207 (222)
T 3jz3_A 145 ADN----FIVRDNGPGVTPEALARIGERFYRPPGQ-------------TATGSGLGLSIVQRIAKLHGMNVEFGNAEQGG 207 (222)
T ss_dssp SSE----EEEECSCC---------------------------------------CTHHHHHHHHHHTTCEEECCBCTTSS
T ss_pred cCe----EEEEECCCCCCHHHHHHHHhhhccCCCC-------------CCCcccccHHHHHHHHHHcCCEEEEEcCCCCc
Confidence 543 8999999999999999999999986532 13599999999999999999999999999999
Q ss_pred eEEEEEEecccc
Q 017683 351 ELNMFSVLLYSY 362 (368)
Q Consensus 351 t~f~i~lP~~~~ 362 (368)
|+|+++||....
T Consensus 208 t~v~~~~P~~~~ 219 (222)
T 3jz3_A 208 FEAKVSWLEHHH 219 (222)
T ss_dssp BEEEEECCCC--
T ss_pred EEEEEeecCCCC
Confidence 999999998754
No 9
>3d36_A Sporulation kinase B; GHKL ATPase, four helix bundle, class I two-component histidine kinase, phosphoprotein; HET: ADP; 2.03A {Geobacillus stearothermophilus}
Probab=99.97 E-value=2.3e-31 Score=236.11 Aligned_cols=218 Identities=15% Similarity=0.156 Sum_probs=181.6
Q ss_pred hHHHHHHHHHHHHHhccCcHHHHHHHHHHHhhccCcccccCChHHHHHHHHHHHHhhHHHHHhHHHHhhhcCCCCCCCcc
Q 017683 106 DERDFTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIGQHVELHNPNPPPHCI 185 (368)
Q Consensus 106 ~~~~~~~~l~~~~~~~~~~l~~l~~~~~el~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~li~~ll~l~~~~~~~~~~ 185 (368)
+.+....++..+.|++++||+.+.+.+..+..... ..+....+++.+.....++..++++++.+++... .
T Consensus 10 ~~~~~~~~~~~l~Helr~pL~~i~~~~~~l~~~~~------~~~~~~~~~~~i~~~~~~l~~~i~~l~~~~~~~~--~-- 79 (244)
T 3d36_A 10 KMEAVTHLAASISHEIRNPLTAARGFIQLIEEQPL------AADKRRQYARIAIEELDRAEAIITDYLTFAKPAP--E-- 79 (244)
T ss_dssp -------CCCCHHHHHHHHHHHHHHHHHHGGGCTT------CHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSC--C--
T ss_pred HHHHHHHHHHHhhHHhccHHHHHHHHHHHHHhccc------ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--C--
Confidence 33445668888999999999999999988775543 3567778888888888889999999999988632 2
Q ss_pred cccccCCCHHHHHHHHHHHHHHHHHHhhCCCCceEEecCCCceeeecchhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCE
Q 017683 186 GYIDTKMSPVQVARNASEHARCVCLREYGSAPDFNIYGDPSFTFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPI 265 (368)
Q Consensus 186 ~~~~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~d~~~l~~vl~NLl~NAi~~~~~~~~~~~~~~~~I 265 (368)
...++++..+++.++..+...+..+ .+.+.+..+ +..+.+|+..|.++|.||+.||++|+++ ++.|
T Consensus 80 --~~~~~~l~~~l~~~~~~~~~~~~~~---~i~~~~~~~-~~~~~~d~~~l~~il~nLl~NA~~~~~~--------~~~i 145 (244)
T 3d36_A 80 --TPEKLNVKLEIERVIDILRPLANMS---CVDIQATLA-PFSVIGEREKFRQCLLNVMKNAIEAMPN--------GGTL 145 (244)
T ss_dssp --CCEEEEHHHHHHHHHHHHHHHHTTT---TEEEEEECC-CCEEEECHHHHHHHHHHHHHHHHHTCTT--------CEEE
T ss_pred --CcchhhHHHHHHHHHHHHHHHHHhc---CeEEeccCC-CceEEeCHHHHHHHHHHHHHHHHHhccC--------CCeE
Confidence 2368999999999999988876654 455555543 3678899999999999999999999865 5889
Q ss_pred EEEEEeCCCceEEEEeecCCCCCCCCcccccccccccCCCCCCcccccccCCCCCCccccCHHHHHHHHHHhCCeEEEEe
Q 017683 266 RIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAADKGTMAGYGYGLPISRLYARYFGGDLQIIS 345 (368)
Q Consensus 266 ~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~~~~~~~~~~~g~GlGL~i~k~i~~~~gG~i~v~s 345 (368)
.|.+...++.+.|.|.|+|+||+++.++++|++||+++.. .|+|+||++|+.+++.|||+|++.+
T Consensus 146 ~i~~~~~~~~~~i~i~D~G~gi~~~~~~~if~~~~~~~~~---------------~g~GlGL~i~~~i~~~~gG~i~~~~ 210 (244)
T 3d36_A 146 QVYVSIDNGRVLIRIADTGVGMTKEQLERLGEPYFTTKGV---------------KGTGLGMMVVYRIIESMNGTIRIES 210 (244)
T ss_dssp EEEEEEETTEEEEEEEECSSCCCHHHHHHTTSTTCCSSGG---------------GCCSCHHHHHHHHHHHTTCEEEEEE
T ss_pred EEEEEEeCCEEEEEEEecCCCCCHHHHHHHhcccccCCCC---------------CCcchhHHHHHHHHHHcCCEEEEEe
Confidence 9999999999999999999999999999999999987743 4899999999999999999999999
Q ss_pred cCCCeeEEEEEEecccc
Q 017683 346 MEGYGELNMFSVLLYSY 362 (368)
Q Consensus 346 ~~g~Gt~f~i~lP~~~~ 362 (368)
.+++||+|+|.||+...
T Consensus 211 ~~~~G~~~~i~lP~~~~ 227 (244)
T 3d36_A 211 EIHKGTTVSIYLPLASS 227 (244)
T ss_dssp ETTTEEEEEEEEECCC-
T ss_pred cCCCcEEEEEEecCCCC
Confidence 99999999999998753
No 10
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima}
Probab=99.97 E-value=3.3e-31 Score=247.50 Aligned_cols=218 Identities=18% Similarity=0.247 Sum_probs=178.7
Q ss_pred hhHHHHHHHHHHHHHhccCcHHHHHHHHHHHhhccCcccccCChHHHHHHHHHHHHhhHHHHHhHHHHhhhcCCCCCCCc
Q 017683 105 SDERDFTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIGQHVELHNPNPPPHC 184 (368)
Q Consensus 105 ~~~~~~~~~l~~~~~~~~~~l~~l~~~~~el~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~li~~ll~l~~~~~~~~~ 184 (368)
++.+...+++..+.|++++||+.+.+.+..+..... ..+....+++.+.....++..++++++++++...
T Consensus 127 ~~~~~~~~~~~~i~Helr~pL~~i~~~~~~l~~~~~------~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~---- 196 (349)
T 3a0r_A 127 ERLSILGEMTARVAHEIRNPITIIGGFIMRMKKHLD------DPETLKKYINIITNELSRLETIVKEILEYSKERQ---- 196 (349)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCS------CSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhcc------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcc----
Confidence 334556789999999999999999999988876554 1234456777777778888889999999988521
Q ss_pred ccccccCCCHHHHHHHHHHHHHHHHHHhhCCCCceEEecC-CCceeeecchhHHHHHHHHHHHHHHHHHHhhcCCCCCCC
Q 017683 185 IGYIDTKMSPVQVARNASEHARCVCLREYGSAPDFNIYGD-PSFTFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAP 263 (368)
Q Consensus 185 ~~~~~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~d~~~l~~vl~NLl~NAi~~~~~~~~~~~~~~~ 263 (368)
.....++++.+++++++..+...+..+ .+.+.+..+ ..+.+.+|+..|.+||.||+.||++|+++ ++
T Consensus 197 -~~~~~~~~l~~~~~~~~~~~~~~~~~~---~i~~~~~~~~~~~~~~~d~~~l~~vl~nLl~NA~k~~~~--------~~ 264 (349)
T 3a0r_A 197 -VLEFTEFNLNELIREVYVLFEEKIRKM---NIDFCFETDNEDLRVEADRTRIKQVLINLVQNAIEATGE--------NG 264 (349)
T ss_dssp -CEEEEEEEHHHHHHHHHHHHHHHHTTT---TCCCEEEESCSCCEEEECHHHHHHHHHHHHTHHHHTTCT--------TC
T ss_pred -ccCCcccCHHHHHHHHHHHHHHHHHHc---CcEEEEecCCCCceEEeCHHHHHHHHHHHHHHHHHhccC--------CC
Confidence 123478999999999999988876655 566666654 35678999999999999999999999865 58
Q ss_pred CEEEEEEeCCCceEEEEeecCCCCCCCCcccccccccccCCCCCCcccccccCCCCCCccccCHHHHHHHHH-HhCCeEE
Q 017683 264 PIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAADKGTMAGYGYGLPISRLYAR-YFGGDLQ 342 (368)
Q Consensus 264 ~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~~~~~~~~~~~g~GlGL~i~k~i~~-~~gG~i~ 342 (368)
.|.|.+...++.+.|.|.|+|+|||++.++++|+|||+++.. |+|+||++|+.+++ .|||.++
T Consensus 265 ~i~i~~~~~~~~~~i~v~D~G~Gi~~~~~~~if~~f~~~~~~----------------g~GlGL~i~~~~v~~~~gg~i~ 328 (349)
T 3a0r_A 265 KIKITSEDMYTKVRVSVWNSGPPIPEELKEKIFSPFFTTKTQ----------------GTGLGLSICRKIIEDEHGGKIW 328 (349)
T ss_dssp CEEEEEEEETTEEEEEEEEESCCCCGGGGTTTSSSCCCC----------------------CCCTHHHHHHHHTTCSBCC
T ss_pred EEEEEEEecCCEEEEEEEECCCCCChHHHhhcCCCCccCCCC----------------CccchHHHHHHHHHHhCCCEEE
Confidence 999999999999999999999999999999999999998755 99999999999998 8999999
Q ss_pred EEecCCCeeEEEEEEeccc
Q 017683 343 IISMEGYGELNMFSVLLYS 361 (368)
Q Consensus 343 v~s~~g~Gt~f~i~lP~~~ 361 (368)
+++.++ ||+|+|.||...
T Consensus 329 ~~~~~~-Gt~f~i~lP~~~ 346 (349)
T 3a0r_A 329 TENREN-GVVFIFEIPKTP 346 (349)
T ss_dssp EEECSS-EEEEEEEEESCT
T ss_pred EEeCCC-cEEEEEEecCCC
Confidence 999865 999999999864
No 11
>4fpp_A Phosphotransferase; four helix bundle, bergerat fold, CCKA, CTRA, CPDR, bacterial cytoplasme; 2.20A {Caulobacter crescentus} PDB: 4fmt_A
Probab=99.96 E-value=2.1e-29 Score=224.55 Aligned_cols=196 Identities=11% Similarity=0.026 Sum_probs=145.6
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHhhccCcccccCChHHHHHHHHHHHHhhHHHHHhHHHHhhhcCCCCCCCcccccccCC
Q 017683 113 MIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIGQHVELHNPNPPPHCIGYIDTKM 192 (368)
Q Consensus 113 ~l~~~~~~~~~~l~~l~~~~~el~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~li~~ll~l~~~~~~~~~~~~~~~~~ 192 (368)
+.+.++||+||||+.|.+.++.+..... .+...++++.+..+..++..+++.+. ++..... ...++
T Consensus 49 las~IaHELrtPL~~I~~~~elL~~~~~-------~~~~~~~l~~I~~~~~~~~~ll~~~r-~~~~~~~------~~~~~ 114 (247)
T 4fpp_A 49 LAARLCHDFISPASAIVSGLDLLEDPSA-------QDMRDDAMNLIASSARKLADLLQFTR-VAFGASA------SAENF 114 (247)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCTTC-------GGGHHHHHHHHHHHHHHHHHHHHHHH-HHTTCCS------SCCCE
T ss_pred HHhccCHHHhHHHHHHHHHHHHHhccCC-------chHHHHHHHHHHHHHHHHHHHHHHHH-Hhhcccc------ccccc
Confidence 5678999999999999999988876554 34556667766666666666665332 2222111 12466
Q ss_pred CHHHHHHHHHHHHHHHHHHhhCCCCceEEecCCCceeeecchhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEEEEeC
Q 017683 193 SPVQVARNASEHARCVCLREYGSAPDFNIYGDPSFTFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADG 272 (368)
Q Consensus 193 ~l~~li~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~d~~~l~~vl~NLl~NAi~~~~~~~~~~~~~~~~I~i~~~~~ 272 (368)
++.++.. .+...+..+ .+.+....+.. ..+..+.|++.||+.||++|++. ++.|.|.+...
T Consensus 115 ~~~~l~~----~~~~~~~~~---~i~l~~~~~~~----~~~~~~~qvl~NLl~NA~~a~~~--------gg~I~v~~~~~ 175 (247)
T 4fpp_A 115 DSRELEK----LAQGVFAHV---RPTLDWQIEPQ----AMNKPSSRAVLNIAQIAASALPA--------GGVATVKGVAA 175 (247)
T ss_dssp EHHHHHH----HHHHHHTTS---SSEEEECCCSC----EECHHHHHHHHHHHHHHHTTCTT--------CCEEEEEEEEE
T ss_pred cHHHHHH----HHHHHHHhh---hhhccccccch----hhhHHHHHHHHHHHHHHHHhcCC--------CCeEEEEEEEE
Confidence 7665433 233333332 44555443332 23677999999999999999987 78999999999
Q ss_pred CCceEEEEeecCCC--CCCCCcccccccccccCCCCCCcccccccCCCCCCccccCHHHHHHHHHHhCCeEEEEecCCCe
Q 017683 273 LEDVTIKVSDEGGG--IPRSGLPKIFTYLYSTARNPLDENTDLAADKGTMAGYGYGLPISRLYARYFGGDLQIISMEGYG 350 (368)
Q Consensus 273 ~~~~~i~V~D~G~G--i~~~~~~~if~~f~~~~~~~~~~~~~~~~~~~~~~g~GlGL~i~k~i~~~~gG~i~v~s~~g~G 350 (368)
++.+.|.|+|+|+| ||++..+++|++|++++. .|+||||+|||+|++.|||+|+++|.+| |
T Consensus 176 ~~~~~i~V~D~G~Gi~i~~~~~~~~f~~~~~~~~----------------~G~GLGLai~~~iv~~hGG~i~v~s~~~-G 238 (247)
T 4fpp_A 176 DGRFSIIADAKGPRARLRPEVLAGLKGEPLAEGL----------------GGPWVQAAYLNALVRAAGGQIAVEIGED-R 238 (247)
T ss_dssp TTEEEEEEEEESTTCCCCHHHHHHHTTCCCCSSC----------------HHHHHHHHHHHHHHHHTTCEEEEEEETT-E
T ss_pred CCEEEEEEEEcCCCCCCCHHHHHHhcCCCCCCCC----------------CCccHHHHHHHHHHHHcCCEEEEEEcCC-E
Confidence 99999999999988 556677778888776654 4999999999999999999999999876 9
Q ss_pred eEEEEEEe
Q 017683 351 ELNMFSVL 358 (368)
Q Consensus 351 t~f~i~lP 358 (368)
|+|+|+||
T Consensus 239 ~~f~v~LP 246 (247)
T 4fpp_A 239 ASIAAWVP 246 (247)
T ss_dssp EEEEEEEE
T ss_pred EEEEEEec
Confidence 99999999
No 12
>1id0_A PHOQ histidine kinase; PHOQ/PHOP, signal transduction, transferase; HET: ANP; 1.60A {Escherichia coli} SCOP: d.122.1.3 PDB: 3cgz_A 3cgy_A
Probab=99.95 E-value=4.4e-27 Score=193.38 Aligned_cols=146 Identities=17% Similarity=0.122 Sum_probs=131.6
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHhhCCCCceEEecCCCceeeecchhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEEE
Q 017683 190 TKMSPVQVARNASEHARCVCLREYGSAPDFNIYGDPSFTFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIV 269 (368)
Q Consensus 190 ~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~d~~~l~~vl~NLl~NAi~~~~~~~~~~~~~~~~I~i~~ 269 (368)
+++++.+++++++..+...+..+ .+.+.+..+.+..+.+|+..|.+++.||+.||++|+. +.|.|.+
T Consensus 2 e~~~l~~~l~~~~~~~~~~~~~~---~i~~~~~~~~~~~~~~d~~~l~~il~nLl~NAi~~~~----------~~i~i~~ 68 (152)
T 1id0_A 2 ELHPVAPLLDNLTSALNKVYQRK---GVNISLDISPEISFVGEQNDFVEVMGNVLDNACKYCL----------EFVEISA 68 (152)
T ss_dssp CEEEHHHHHHHHHHHHHHHTTTT---TCEEEEECCTTCEEESCHHHHHHHHHHHHHHHHHHCS----------SEEEEEE
T ss_pred CcccHHHHHHHHHHHHHHHHHhC---CcEEEEEcCCCceEeeCHHHHHHHHHHHHHHHHHhCc----------CeEEEEE
Confidence 57899999999999998877665 6778888777788999999999999999999999973 4788888
Q ss_pred EeCCCceEEEEeecCCCCCCCCcccccccccccCCCCCCcccccccCCCCCCccccCHHHHHHHHHHhCCeEEEEecCCC
Q 017683 270 ADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAADKGTMAGYGYGLPISRLYARYFGGDLQIISMEGY 349 (368)
Q Consensus 270 ~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~~~~~~~~~~~g~GlGL~i~k~i~~~~gG~i~v~s~~g~ 349 (368)
...++.+.|.|.|+|+||+++.++++|++|++++.. ..|+|+||++|+.+++.|||++++.+.++.
T Consensus 69 ~~~~~~~~i~i~D~G~gi~~~~~~~~f~~~~~~~~~--------------~~g~GlGL~i~~~~~~~~gG~i~~~~~~~~ 134 (152)
T 1id0_A 69 RQTDEHLYIVVEDDGPGIPLSKREVIFDRGQRVDTL--------------RPGQGVGLAVAREITEQYEGKIVAGESMLG 134 (152)
T ss_dssp EECSSCEEEEEEESSSCCCGGGTTGGGSCCCCTTCC--------------CTTCCSCHHHHHHHHHHTTCEEEEEECTTS
T ss_pred EecCCEEEEEEEeCCCCcCHHHHHHHhccceeccCC--------------CCCcccCHHHHHHHHHHcCCEEEEEeCCCC
Confidence 889999999999999999999999999999998765 369999999999999999999999999989
Q ss_pred eeEEEEEEecccc
Q 017683 350 GELNMFSVLLYSY 362 (368)
Q Consensus 350 Gt~f~i~lP~~~~ 362 (368)
||+|+|.||+...
T Consensus 135 G~~~~i~lP~~~~ 147 (152)
T 1id0_A 135 GARMEVIFGRQHS 147 (152)
T ss_dssp SEEEEEEECCCC-
T ss_pred cEEEEEEEecccc
Confidence 9999999998753
No 13
>3a0y_A Sensor protein; ATP-LID, kinase, phosphoprotein, transferase, two-component regulatory system; 1.57A {Thermotoga maritima} PDB: 3a0t_A* 3a0x_A 3a0w_A 3a0z_A
Probab=99.94 E-value=2.4e-26 Score=188.73 Aligned_cols=145 Identities=23% Similarity=0.289 Sum_probs=129.4
Q ss_pred ccCCCHHHHHHHHHHHHHHHHHHhhCCCCceEEecC-CCceeeecchhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEE
Q 017683 189 DTKMSPVQVARNASEHARCVCLREYGSAPDFNIYGD-PSFTFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRI 267 (368)
Q Consensus 189 ~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~d~~~l~~vl~NLl~NAi~~~~~~~~~~~~~~~~I~i 267 (368)
.+++++.+++++++..+...+..+ .+.+.+..+ .+..+.+|+..|.+++.||+.||++|+++ ++.|.|
T Consensus 3 ~~~~~l~~~~~~~~~~~~~~~~~~---~i~~~~~~~~~~~~i~~d~~~l~~il~nll~NAi~~~~~--------~~~I~i 71 (152)
T 3a0y_A 3 FTEFNLNELIREVYVLFEEKIRKM---NIDFCFETDNEDLRVEADRTRIKQVLINLVQNAIEATGE--------NGKIKI 71 (152)
T ss_dssp CEEEEHHHHHHHHHHHHHHHHHHT---TCEEEEEESCSSCEEEECHHHHHHHHHHHHHHHHHHHCT--------TCEEEE
T ss_pred cEEecHHHHHHHHHHHHHHHHHHc---CcEEEEecCCCCcEEEECHHHHHHHHHHHHHHHHHhcCC--------CCEEEE
Confidence 367899999999999999888776 667777654 45689999999999999999999999965 589999
Q ss_pred EEEeCCCceEEEEeecCCCCCCCCcccccccccccCCCCCCcccccccCCCCCCccccCHHHHHHHHH-HhCCeEEEEec
Q 017683 268 IVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAADKGTMAGYGYGLPISRLYAR-YFGGDLQIISM 346 (368)
Q Consensus 268 ~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~~~~~~~~~~~g~GlGL~i~k~i~~-~~gG~i~v~s~ 346 (368)
.+...++.+.|.|.|+|+||+++.++++|++|++++.. |+|+||++|+.+++ .|||.+.+.+.
T Consensus 72 ~~~~~~~~~~i~i~D~G~g~~~~~~~~~f~~~~~~~~~----------------g~GlGL~i~~~~~~~~~gg~~~~~~~ 135 (152)
T 3a0y_A 72 TSEDMYTKVRVSVWNSGPPIPEELKEKIFSPFFTTKTQ----------------GTGLGLSICRKIIEDEHGGKIWTENR 135 (152)
T ss_dssp EEEECSSEEEEEEEEESCCCCGGGTTGGGSTTCCCC------------------CCCCSHHHHHHHHHTTTSCEEEEEEE
T ss_pred EEEecCCEEEEEEEeCCCCcCHHHHHhHhhhhccCCCC----------------CCCcCHHHHHHHHHHhCCcEEEEecC
Confidence 99999999999999999999999999999999987654 99999999999999 99999999998
Q ss_pred CCCeeEEEEEEeccc
Q 017683 347 EGYGELNMFSVLLYS 361 (368)
Q Consensus 347 ~g~Gt~f~i~lP~~~ 361 (368)
++ ||+|+|.||+..
T Consensus 136 ~~-g~~~~i~lP~~~ 149 (152)
T 3a0y_A 136 EN-GVVFIFEIPKTP 149 (152)
T ss_dssp TT-EEEEEEEEESCC
T ss_pred CC-CEEEEEEeCCCC
Confidence 65 999999999865
No 14
>1ysr_A Sensor-type histidine kinase PRRB; ATP-binding domain, structural genomics, mycobacterium tuberculosis structural proteomics project; 1.78A {Mycobacterium tuberculosis} SCOP: d.122.1.3 PDB: 1ys3_A
Probab=99.94 E-value=4.2e-27 Score=193.18 Aligned_cols=145 Identities=17% Similarity=0.251 Sum_probs=121.0
Q ss_pred ccCCCHHHHHHHHHHHHHHHHHHhhCCCCceEEecCCCceeeecchhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEE
Q 017683 189 DTKMSPVQVARNASEHARCVCLREYGSAPDFNIYGDPSFTFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRII 268 (368)
Q Consensus 189 ~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~d~~~l~~vl~NLl~NAi~~~~~~~~~~~~~~~~I~i~ 268 (368)
.+++++.+++++++..+.... ....+.+..+.+..+.+|+..|.+++.||+.||++|+.. +.|.|.
T Consensus 5 ~~~~~l~~~~~~~~~~~~~~~-----~~~~i~~~~~~~~~~~~d~~~l~~il~nLl~NA~~~~~~---------~~I~i~ 70 (150)
T 1ysr_A 5 HVPVDITDLLDRAAHDAARIY-----PDLDVSLVPSPTCIIVGLPAGLRLAVDNAIANAVKHGGA---------TLVQLS 70 (150)
T ss_dssp CEEEEHHHHHHHHHHHHHHHS-----TTCEEEECSCCCCEEEECHHHHHHHHHHHHHHHHHTTCC---------SEEEEE
T ss_pred ccccCHHHHHHHHHHHHHHhc-----cCCceEEccCCCceEecCHHHHHHHHHHHHHHHHhcCCC---------cEEEEE
Confidence 368999999999999876643 245777777777789999999999999999999999754 589999
Q ss_pred EEeCCCceEEEEeecCCCCCCCCcccccccccccCCCCCCcccccccCCCCCCccccCHHHHHHHHHHhCCeEEEEecCC
Q 017683 269 VADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAADKGTMAGYGYGLPISRLYARYFGGDLQIISMEG 348 (368)
Q Consensus 269 ~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~~~~~~~~~~~g~GlGL~i~k~i~~~~gG~i~v~s~~g 348 (368)
+...++.+.|.|.|+|+||+++.++++|++||+.... ...|+|+||++|+++++.|||++++.+.++
T Consensus 71 ~~~~~~~~~i~v~D~G~gi~~~~~~~if~~f~~~~~~-------------~~~g~GlGL~i~~~~~~~~gG~i~~~~~~~ 137 (150)
T 1ysr_A 71 AVSSRAGVEIAIDDNGSGVPEGERQVVFERFSRGSTA-------------SHSGSGLGLALVAQQAQLHGGTASLENSPL 137 (150)
T ss_dssp EEEETTEEEEEEEESSSCCCGGGHHHHHTSCC------------------------CCCHHHHHHHHHTTCEEEEEECTT
T ss_pred EEecCCEEEEEEEECCCCCCHHHHHHHhcccccCCCC-------------CCCCCCcCHHHHHHHHHHcCCEEEEeecCC
Confidence 9888899999999999999999999999999976432 135999999999999999999999999999
Q ss_pred CeeEEEEEEecc
Q 017683 349 YGELNMFSVLLY 360 (368)
Q Consensus 349 ~Gt~f~i~lP~~ 360 (368)
+||+|+|.||+.
T Consensus 138 ~G~~~~i~lP~~ 149 (150)
T 1ysr_A 138 GGARLVLRLPGP 149 (150)
T ss_dssp SSEEEEEEEECC
T ss_pred CCEEEEEEEeCC
Confidence 999999999975
No 15
>1bxd_A ENVZ(290-450), protein (osmolarity sensor protein (ENVZ)); histidine kinase, osmosensor, His-Asp phosphorelay system, signal transduction; HET: ANP; NMR {Escherichia coli BL21} SCOP: d.122.1.3
Probab=99.93 E-value=7e-26 Score=188.17 Aligned_cols=144 Identities=17% Similarity=0.107 Sum_probs=125.4
Q ss_pred ccCCCHHHHHHHHHHHHHHHHHHhhCCCCceEEec-CCCceeeecchhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEE
Q 017683 189 DTKMSPVQVARNASEHARCVCLREYGSAPDFNIYG-DPSFTFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRI 267 (368)
Q Consensus 189 ~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~~d~~~l~~vl~NLl~NAi~~~~~~~~~~~~~~~~I~i 267 (368)
.+++++.+++++++..+.. ....+.+.. .....+.+|+..|.+++.||+.||++|+ . +.|.|
T Consensus 7 ~~~~~l~~~~~~~~~~~~~-------~~~~i~~~~~~~~~~v~~d~~~l~~il~nll~NAik~~-~---------~~I~i 69 (161)
T 1bxd_A 7 MEMADLNAVLGEVIAAESG-------YEREIETALYPGSIEVKMHPLSIKRAVANMVVNAARYG-N---------GWIKV 69 (161)
T ss_dssp SEEECHHHHHHHHHHHHCS-------SSCCEEEECCSSCCCEEECHHHHHHHHHHHHHHHHTTC-C---------SCEEE
T ss_pred ccccCHHHHHHHHHHHhhh-------hcceEEEEecCCCceEEECHHHHHHHHHHHHHHHHhhc-C---------CeEEE
Confidence 4789999999999887432 244566653 4456799999999999999999999997 3 79999
Q ss_pred EEEeCCCceEEEEeecCCCCCCCCcccccccccccCCCCCCcccccccCCCCCCccccCHHHHHHHHHHhCCeEEEEecC
Q 017683 268 IVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAADKGTMAGYGYGLPISRLYARYFGGDLQIISME 347 (368)
Q Consensus 268 ~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~~~~~~~~~~~g~GlGL~i~k~i~~~~gG~i~v~s~~ 347 (368)
.+...++.+.|.|.|+|+||+++.++++|++||+++.. ....|+|+||++|+.+++.|||+|++.+.+
T Consensus 70 ~~~~~~~~~~i~i~D~G~gi~~~~~~~~f~~f~~~~~~------------~~~~g~GlGL~i~~~~~~~~gG~i~~~~~~ 137 (161)
T 1bxd_A 70 SSGTEPNRAWFQVEDDGPGIAPEQRKHLFQPFVRGDSA------------RTISGTGLGLAIVQRIVDNHNGMLELGTSE 137 (161)
T ss_dssp EEEEETTEEEEEEEEESSCSCTTGGGCSSCCCCCCSCC------------CCCCCCSCCCCTTHHHHHHHTSEEEEEEET
T ss_pred EEEEcCCEEEEEEEeCCCCCCHHHHHHhCCCceeCCCC------------CCCCCcccCHHHHHHHHHHcCCEEEEEECC
Confidence 99988999999999999999999999999999998754 224699999999999999999999999998
Q ss_pred CCeeEEEEEEeccc
Q 017683 348 GYGELNMFSVLLYS 361 (368)
Q Consensus 348 g~Gt~f~i~lP~~~ 361 (368)
+.||+|+|.||+..
T Consensus 138 ~~G~~~~i~lP~~~ 151 (161)
T 1bxd_A 138 RGGLSIRAWLPVPV 151 (161)
T ss_dssp TTEEEEEEEECCCS
T ss_pred CCeEEEEEEEeCCc
Confidence 89999999999865
No 16
>3sl2_A Sensor histidine kinase YYCG; ATP binding, intact ATP, bergerat fold, TR; HET: ATP; 1.61A {Bacillus subtilis}
Probab=99.93 E-value=9.4e-26 Score=190.44 Aligned_cols=149 Identities=20% Similarity=0.297 Sum_probs=123.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhhCCCCceEEecCC-CceeeecchhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEEE
Q 017683 191 KMSPVQVARNASEHARCVCLREYGSAPDFNIYGDP-SFTFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIV 269 (368)
Q Consensus 191 ~~~l~~li~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~d~~~l~~vl~NLl~NAi~~~~~~~~~~~~~~~~I~i~~ 269 (368)
++++.++++.++..+... .. ..+.+.+..+. ...+.+|+..|.+||.|||.||++|+.. ++.|.|.+
T Consensus 2 ~v~l~~~l~~~~~~~~~~-~~---~~i~~~~~~~~~~~~~~~d~~~l~~il~nLl~NAi~~~~~--------~~~i~I~i 69 (177)
T 3sl2_A 2 WIQIVRFMSLIIDRFEMT-KE---QHVEFIRNLPDRDLYVEIDQDKITQVLDNIISNALKYSPE--------GGHVTFSI 69 (177)
T ss_dssp EEEHHHHHHHHHHHHHTS-SC---C--CEEEECCSSCCEEESCHHHHHHHHHHHHHHHHHTCCT--------TCCEEEEE
T ss_pred eeeHHHHHHHHHHHHHHH-Hh---cCcEEEEecCCCCcEEEeCHHHHHHHHHHHHHHHHHhCCC--------CCeEEEEE
Confidence 468899999999988765 32 36677777654 5678999999999999999999999865 57777776
Q ss_pred --EeCCCceEEEEeecCCCCCCCCcccccccccccCCCCCCcccccccCCCCCCccccCHHHHHHHHHHhCCeEEEEecC
Q 017683 270 --ADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAADKGTMAGYGYGLPISRLYARYFGGDLQIISME 347 (368)
Q Consensus 270 --~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~~~~~~~~~~~g~GlGL~i~k~i~~~~gG~i~v~s~~ 347 (368)
...++.+.|.|.|+|+||+++.++++|++||+.+.. ......|+|+||++|+.+++.|||+|++.+.+
T Consensus 70 ~~~~~~~~~~i~V~D~G~gi~~~~~~~lf~~~~~~~~~----------~~~~~~g~GlGL~iv~~~~~~~~G~i~i~~~~ 139 (177)
T 3sl2_A 70 DVNEEEELLYISVKDEGIGIPKKDVEKVFDRFYRVDKA----------RTRKLGGTGLGLAIAKEMVQAHGGDIWADSIE 139 (177)
T ss_dssp EEETTTTEEEEEEECCSSCCCTTTTTTTTSTTCCCC----------------CCCCCCHHHHHHHHHHHTTCCEEEEEET
T ss_pred EEccCCCEEEEEEEECCCCCCHHHHHHHHhhhccCCCC----------CCCCCCCCCcCHHHHHHHHHHcCCEEEEEecC
Confidence 678889999999999999999999999999987654 23334699999999999999999999999999
Q ss_pred CCeeEEEEEEeccc
Q 017683 348 GYGELNMFSVLLYS 361 (368)
Q Consensus 348 g~Gt~f~i~lP~~~ 361 (368)
+.||+|+|.||+..
T Consensus 140 ~~Gt~~~i~lP~~~ 153 (177)
T 3sl2_A 140 GKGTTITFTLPYKE 153 (177)
T ss_dssp TTEEEEEEEEEEEC
T ss_pred CCCeEEEEEEeCCC
Confidence 99999999999864
No 17
>1b3q_A Protein (chemotaxis protein CHEA); histine kinase, signal transduction, multi-domai protein, transferase; 2.60A {Thermotoga maritima} SCOP: a.30.2.1 b.40.7.1 d.122.1.3 PDB: 2ch4_A* 3ur1_A
Probab=99.93 E-value=5.6e-26 Score=214.51 Aligned_cols=209 Identities=14% Similarity=0.129 Sum_probs=144.4
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHhhccCcccccCChHHHHHHHHHHHHhhHHHHHhHHHHhhhcCCCCCCCcccccc
Q 017683 110 FTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIGQHVELHNPNPPPHCIGYID 189 (368)
Q Consensus 110 ~~~~l~~~~~~~~~~l~~l~~~~~el~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~li~~ll~l~~~~~~~~~~~~~~ 189 (368)
..+++..+.|++++|++.+......+. .+. +..+..++..+++++++++.. .
T Consensus 10 k~d~l~~~~~el~~~~~~l~~~~~~~~-----------~~~-------i~~~~~~l~~l~~~l~~~~~~----------~ 61 (379)
T 1b3q_A 10 KLDNLMDLMGELVIARSRILETLKKYN-----------IKE-------LDESLSHLSRITLDLQNVVMK----------I 61 (379)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSSCC-----------CHH-------HHHHHHHHHHHHHHHHHHHHH----------H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh-----------HHH-------HHHHHHHHHHHHHHHHHHHHH----------c
Confidence 344667777877777766654332211 122 233444466677888777532 1
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHhhCCCCceEEecCCCceeeecchh---HHHHHHHHHHHHHHHHHH----hhcCCCCCC
Q 017683 190 TKMSPVQVARNASEHARCVCLREYGSAPDFNIYGDPSFTFPYVPSH---LHLMVFELVKNSLRAVEE----RYMDSDKVA 262 (368)
Q Consensus 190 ~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~d~~~---l~~vl~NLl~NAi~~~~~----~~~~~~~~~ 262 (368)
..+++..++..+...++..+... +..+.+.+.+. ....|+.. +.++|.||+.||++|+.+ +....+...
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~-~~~v~l~~~~~---~~~~d~~~~~~l~~~l~nLl~NAi~h~~e~~~~r~~~gk~~~ 137 (379)
T 1b3q_A 62 RMVPISFVFNRFPRMVRDLAKKM-NKEVNFIMRGE---DTELDRTFVEEIGEPLLHLLRNAIDHGIEPKEERIAKGKPPI 137 (379)
T ss_dssp HEEETHHHHTTHHHHHHHHHHHT-TCCEEEEEECT---TCEEEHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHTTCCSS
T ss_pred ceecHHHHHHHHHHHHHHHHHHh-CCeEEEEEcCC---CeeecHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhcCCCCC
Confidence 35667788888888888877665 33444555433 23456654 555599999999999721 111111125
Q ss_pred CCEEEEEEeCCCceEEEEeecCCCCCCCCc------------------------ccccccccccCCCCCCcccccccCCC
Q 017683 263 PPIRIIVADGLEDVTIKVSDEGGGIPRSGL------------------------PKIFTYLYSTARNPLDENTDLAADKG 318 (368)
Q Consensus 263 ~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~------------------------~~if~~f~~~~~~~~~~~~~~~~~~~ 318 (368)
+.|.|.+...++.+.|+|+|+|+||+++.+ +++|+|||+++.. .+
T Consensus 138 g~I~i~~~~~~~~v~i~V~D~G~Gi~~~~~~~~a~~~gl~~~~~~~~~~~~~~~~~iF~p~fst~~~-----------~~ 206 (379)
T 1b3q_A 138 GTLILSARHEGNNVVIEVEDDGRGIDKEKIIRKAIEKGLIDESKAATLSDQEILNFLFVPGFSTKEK-----------VS 206 (379)
T ss_dssp EEEEEEEEEETTEEEEEEEECSCCCCHHHHHHHHHHSSSCCSTTTTTSCTHHHHSGGGSTTCC-----------------
T ss_pred cEEEEEEEEeCCEEEEEEEECCCCCCHHHHHHHHHHcCCCChhhhhcCCHHHHHHHhcCCCCccCCc-----------cC
Confidence 889999999999999999999999999976 8999999998865 34
Q ss_pred CCCccccCHHHHHHHHHHhCCeEEEEecCCCeeEEEEEEeccc
Q 017683 319 TMAGYGYGLPISRLYARYFGGDLQIISMEGYGELNMFSVLLYS 361 (368)
Q Consensus 319 ~~~g~GlGL~i~k~i~~~~gG~i~v~s~~g~Gt~f~i~lP~~~ 361 (368)
..+|+|+||++||.+++.|||+|+++|.+|+||+|+|.||+..
T Consensus 207 ~~~G~GlGL~iv~~~v~~~gG~i~v~s~~g~Gt~f~i~lPl~~ 249 (379)
T 1b3q_A 207 EVSGRGVGMDVVKNVVESLNGSMGIESEKDKGTKVTIRLPLTL 249 (379)
T ss_dssp -----CCCSHHHHHHHHHTTCEEEEEEETTTEEEEEEEEESSC
T ss_pred CCCCccccHHHHHHHHHHCCCEEEEEEcCCCCeEEEeccCCcc
Confidence 4579999999999999999999999999999999999999865
No 18
>1r62_A Nitrogen regulation protein NR(II); PII, histidine kinase, two component system, transfera; 1.60A {Escherichia coli} SCOP: d.122.1.3
Probab=99.93 E-value=1.1e-25 Score=186.42 Aligned_cols=144 Identities=22% Similarity=0.274 Sum_probs=106.0
Q ss_pred ccCCCHHHHHHHHHHHHHHHHHHhhCCCCceEEecCCCc-eeeecchhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEE
Q 017683 189 DTKMSPVQVARNASEHARCVCLREYGSAPDFNIYGDPSF-TFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRI 267 (368)
Q Consensus 189 ~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~d~~~l~~vl~NLl~NAi~~~~~~~~~~~~~~~~I~i 267 (368)
.+++++.++++.++..+... .. ..+.+.+..+.+. .+.+|+..|.+++.||+.||++|+.+. ++.|.|
T Consensus 5 ~~~~~l~~~~~~~~~~~~~~-~~---~~i~~~~~~~~~~~~i~~d~~~l~~il~nLl~NAik~~~~~-------~~~I~i 73 (160)
T 1r62_A 5 RVTESIHKVAERVVTLVSME-LP---DNVRLIRDYDPSLPELAHDPDQIEQVLLNIVRNALQALGPE-------GGEIIL 73 (160)
T ss_dssp CEEECHHHHHHHHHHHHTTT-CC---TTEEEEEECCTTCCCEEECHHHHHHHHHHHHHHHHHHHGGG-------CEEEEE
T ss_pred cccCCHHHHHHHHHHHHHhh-cc---cCcEEEEEcCCCCCeeeeCHHHHHHHHHHHHHHHHHHhhcc-------CCeEEE
Confidence 46899999999999987764 22 3566666665543 689999999999999999999999752 378999
Q ss_pred EEEeCCC----------ceEEEEeecCCCCCCCCcccccccccccCCCCCCcccccccCCCCCCccccCHHHHHHHHHHh
Q 017683 268 IVADGLE----------DVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAADKGTMAGYGYGLPISRLYARYF 337 (368)
Q Consensus 268 ~~~~~~~----------~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~~~~~~~~~~~g~GlGL~i~k~i~~~~ 337 (368)
.+...++ .+.|.|.|+|+||+++.++++|++|++++.. |+|+||++|+.+++.|
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~i~v~D~G~gi~~~~~~~lf~~~~~~~~~----------------g~GlGL~i~~~~~~~~ 137 (160)
T 1r62_A 74 RTRTAFQLTLHGERYRLAARIDVEDNGPGIPPHLQDTLFYPMVSGREG----------------GTGLGLSIARNLIDQH 137 (160)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEEEEECTTC------------------------------------CHHHHHHHHHHHHT
T ss_pred EEeccccccccccccccEEEEEEEeCCCCCCHHHHHHhhCccccCCCC----------------CCccCHHHHHHHHHHC
Confidence 8877766 8999999999999999999999999987755 9999999999999999
Q ss_pred CCeEEEEecCCCeeEEEEEEecc
Q 017683 338 GGDLQIISMEGYGELNMFSVLLY 360 (368)
Q Consensus 338 gG~i~v~s~~g~Gt~f~i~lP~~ 360 (368)
||++++.|.+++ |+|+|.||+.
T Consensus 138 gG~l~i~s~~~~-~~~~i~lP~~ 159 (160)
T 1r62_A 138 SGKIEFTSWPGH-TEFSVYLPIR 159 (160)
T ss_dssp TCEEEEEEETTE-EEEEEEEEEE
T ss_pred CCeEEEEeCCCC-EEEEEEEecc
Confidence 999999998875 9999999975
No 19
>1i58_A Chemotaxis protein CHEA; beta-alpha sandwich, signaling protein, transferase; HET: ACP ADP; 1.60A {Thermotoga maritima} SCOP: d.122.1.3 PDB: 1i59_A* 1i5a_A* 1i5b_A* 1i5c_A* 1i5d_A*
Probab=99.92 E-value=2.1e-25 Score=190.33 Aligned_cols=155 Identities=15% Similarity=0.178 Sum_probs=121.3
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHhhCCCCceEEecCCCceeeec---chhHHHHHHHHHHHHHHHHHHhh----cCCCCCC
Q 017683 190 TKMSPVQVARNASEHARCVCLREYGSAPDFNIYGDPSFTFPYV---PSHLHLMVFELVKNSLRAVEERY----MDSDKVA 262 (368)
Q Consensus 190 ~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~d---~~~l~~vl~NLl~NAi~~~~~~~----~~~~~~~ 262 (368)
+++++.++++.+...+...+..+ ...+.+..+.+ .+..| +..+.+++.||+.||++|+.+.. ...+..+
T Consensus 3 ~~~~l~~~~~~~~~~~~~~~~~~---~~~i~~~~~~~-~~~~~~~~~~~l~~il~nLl~NAik~~~~~~~~~~~~~~~~~ 78 (189)
T 1i58_A 3 HMVPISFVFNRFPRMVRDLAKKM---NKEVNFIMRGE-DTELDRTFVEEIGEPLLHLLRNAIDHGIEPKEERIAKGKPPI 78 (189)
T ss_dssp SEEETHHHHTTHHHHHHHHHHHT---TCCEEEEEECT-TCEEEHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHTSCSS
T ss_pred eEecHHHHHHHHHHHHHHHHHHh---CCcEEEEEcCC-cccccHHHHHHHHHHHHHHHHHHHHhhhccccccccccCCCC
Confidence 57899999999999999988876 44555443322 23334 44566679999999999972100 0000015
Q ss_pred CCEEEEEEeCCCceEEEEeecCCCCCCCCc------------------------ccccccccccCCCCCCcccccccCCC
Q 017683 263 PPIRIIVADGLEDVTIKVSDEGGGIPRSGL------------------------PKIFTYLYSTARNPLDENTDLAADKG 318 (368)
Q Consensus 263 ~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~------------------------~~if~~f~~~~~~~~~~~~~~~~~~~ 318 (368)
+.|.|.+...++.+.|.|+|+|+||+++.+ +++|+|||+++.. ..
T Consensus 79 ~~I~I~~~~~~~~~~i~V~D~G~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~if~~~~~~~~~-----------~~ 147 (189)
T 1i58_A 79 GTLILSARHEGNNVVIEVEDDGRGIDKEKIIRKAIEKGLIDESKAATLSDQEILNFLFVPGFSTKEK-----------VS 147 (189)
T ss_dssp EEEEEEEEEETTEEEEEEEECSSCCCHHHHHHHHHHTTSSCHHHHTTCCHHHHHGGGGSTTCSHHHH-----------HH
T ss_pred CeEEEEEEecCCEEEEEEEeCCCCcCHHHHhhhhhhccchhhhhhcccchhhhHHHhcCCccccccc-----------CC
Confidence 789999999999999999999999999976 9999999988652 12
Q ss_pred CCCccccCHHHHHHHHHHhCCeEEEEecCCCeeEEEEEEec
Q 017683 319 TMAGYGYGLPISRLYARYFGGDLQIISMEGYGELNMFSVLL 359 (368)
Q Consensus 319 ~~~g~GlGL~i~k~i~~~~gG~i~v~s~~g~Gt~f~i~lP~ 359 (368)
...|+|+||++|+.+++.|||+|++.|.++.||+|+|.||+
T Consensus 148 ~~~g~GlGL~iv~~~~~~~~G~i~i~s~~~~Gt~~~i~lPl 188 (189)
T 1i58_A 148 EVSGRGVGMDVVKNVVESLNGSISIESEKDKGTKVTIRLPL 188 (189)
T ss_dssp GGGTCCCHHHHHHHHHHHTTCEEEEEEETTTEEEEEEEEEC
T ss_pred CCCCCccCHHHHHHHHHHcCCEEEEEeCCCCceEEEEEEeC
Confidence 23589999999999999999999999999999999999997
No 20
>3ehh_A Sensor kinase (YOCF protein); four-helix bundle, GHL ATPase domain, transferase; HET: MSE ADP; 2.10A {Bacillus subtilis} PDB: 3ehj_A* 3gie_A* 3gif_A* 3gig_A* 3ehf_A*
Probab=99.90 E-value=5.3e-23 Score=179.23 Aligned_cols=190 Identities=16% Similarity=0.080 Sum_probs=131.5
Q ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHhhccCcccccCChHHHHHHHHHHHHhhHHHHHhHHHHhhhcCCCCCCCcccc
Q 017683 108 RDFTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIGQHVELHNPNPPPHCIGY 187 (368)
Q Consensus 108 ~~~~~~l~~~~~~~~~~l~~l~~~~~el~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~li~~ll~l~~~~~~~~~~~~ 187 (368)
+....+...+.|++.++|+.+...++.+..... ...+.....+..+......+...+..++...
T Consensus 26 ~er~~la~~l~~~l~~~L~~i~~~~~~~~~~~~-----~~~~~~~~~l~~i~~~~~~~~~~~r~~~~~~----------- 89 (218)
T 3ehh_A 26 EERQRMARDLVDTLGQKLSLMGLKSDLARKLIY-----KDPEQAARELKSVQQTARTSLNEVRKIVSSM----------- 89 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-----TCHHHHHHHHHHHHHHHHHHHHHHHHHHTTT-----------
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhc-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----------
Confidence 334557777888899999988888876665443 2344555556654443333333333333221
Q ss_pred cccCCCHHHHHHHHHHHHHHHHHHhhCCCCceEEecCCC--ceeeecchhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCE
Q 017683 188 IDTKMSPVQVARNASEHARCVCLREYGSAPDFNIYGDPS--FTFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPI 265 (368)
Q Consensus 188 ~~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~d~~~l~~vl~NLl~NAi~~~~~~~~~~~~~~~~I 265 (368)
.+.++.+.+..+...+. .. .+.+.+..+.+ .....++..+.+++.|++.||++|++ .+.|
T Consensus 90 --~~~~l~~~l~~~~~~~~----~~---~~~~~~~~~~~~~~~~~~~~~~l~~il~nll~Na~k~~~---------~~~i 151 (218)
T 3ehh_A 90 --KGIRLKDELINIKQILE----AA---DIMFIYEEEKWPENISLLNENILSMCLKEAVTNVVKHSQ---------AKTC 151 (218)
T ss_dssp --CCCCHHHHHHHHHHHHH----HT---TCEEECCCCCCCSCCCHHHHHHHHHHHHHHHHHHHHHTC---------CSEE
T ss_pred --CCcCHHHHHHHHHHHHH----hc---CCEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCC---------CCEE
Confidence 34577777766655543 33 45565554432 23345677899999999999999984 3789
Q ss_pred EEEEEeCCCceEEEEeecCCCCCCCCcccccccccccCCCCCCcccccccCCCCCCccccCHHHHHHHHHHhCCeEEEEe
Q 017683 266 RIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAADKGTMAGYGYGLPISRLYARYFGGDLQIIS 345 (368)
Q Consensus 266 ~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~~~~~~~~~~~g~GlGL~i~k~i~~~~gG~i~v~s 345 (368)
.|.+...++.+.|.|+|+|+|||++.. . |+|+||++|+.+++.|||+|++.|
T Consensus 152 ~i~~~~~~~~~~i~V~D~G~Gi~~~~~------------~----------------g~GlGL~~~~~~v~~~gG~i~~~s 203 (218)
T 3ehh_A 152 RVDIQQLWKEVVITVSDDGTFKGEENS------------F----------------SKGHGLLGMRERLEFANGSLHIDT 203 (218)
T ss_dssp EEEEEEETTEEEEEEEESSCCCC------------------------------------CHHHHHHHHHHHTTCEEEEEC
T ss_pred EEEEEEeCCEEEEEEEECCcCCCCCCC------------C----------------CCCCCHHHHHHHHHHcCCEEEEeC
Confidence 999999999999999999999999853 3 899999999999999999999999
Q ss_pred cCCCeeEEEEEEeccc
Q 017683 346 MEGYGELNMFSVLLYS 361 (368)
Q Consensus 346 ~~g~Gt~f~i~lP~~~ 361 (368)
.+ ||+|+|.||+..
T Consensus 204 ~~--Gt~~~i~lP~~~ 217 (218)
T 3ehh_A 204 EN--GTKLTMAIPNNS 217 (218)
T ss_dssp SS--SEEEEEEEEC--
T ss_pred CC--CeEEEEEEecCC
Confidence 87 999999999753
No 21
>3ehg_A Sensor kinase (YOCF protein); GHL ATPase domain, transferase; HET: ATP; 1.74A {Bacillus subtilis}
Probab=99.85 E-value=5.4e-21 Score=152.39 Aligned_cols=124 Identities=19% Similarity=0.088 Sum_probs=97.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHhhCCCCceEEecCCC--ceeeecchhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEEE
Q 017683 192 MSPVQVARNASEHARCVCLREYGSAPDFNIYGDPS--FTFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIV 269 (368)
Q Consensus 192 ~~l~~li~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~d~~~l~~vl~NLl~NAi~~~~~~~~~~~~~~~~I~i~~ 269 (368)
+++.+.+..+...+ ... .+.+.+..+.+ .....++..+.+++.|++.||++|+. .+.|.|.+
T Consensus 2 v~l~~~l~~~~~~~----~~~---~i~~~~~~~~~~~~~~~~~~~~l~~il~nll~Na~k~~~---------~~~i~i~~ 65 (128)
T 3ehg_A 2 IRLKDELINIKQIL----EAA---DIMFIYEEEKWPENISLLNENILSMCLKEAVTNVVKHSQ---------AKTCRVDI 65 (128)
T ss_dssp CCHHHHHHHHHHHH----HHT---TCEEECCCCSCCSCCCHHHHHHHHHHHHHHHHHHHHHTC---------CSEEEEEE
T ss_pred ccHHHHHHHHHHHH----HHc---CCEEEEEcCccccccCHHHHHHHHHHHHHHHHHHHhcCC---------CcEEEEEE
Confidence 45555555554443 333 55666554432 23345678899999999999999974 37899999
Q ss_pred EeCCCceEEEEeecCCCCCCCCcccccccccccCCCCCCcccccccCCCCCCccccCHHHHHHHHHHhCCeEEEEecCCC
Q 017683 270 ADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAADKGTMAGYGYGLPISRLYARYFGGDLQIISMEGY 349 (368)
Q Consensus 270 ~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~~~~~~~~~~~g~GlGL~i~k~i~~~~gG~i~v~s~~g~ 349 (368)
...++.+.|.|+|+|+||+++.. . |+|+||++++.+++.|||++++.|.+
T Consensus 66 ~~~~~~~~i~V~D~G~Gi~~~~~------------~----------------g~GlGL~~~~~~~~~~gG~i~~~s~~-- 115 (128)
T 3ehg_A 66 QQLWKEVVITVSDDGTFKGEENS------------F----------------SKGHGLLGMRERLEFANGSLHIDTEN-- 115 (128)
T ss_dssp EEETTEEEEEEEESSCCCSCSSC------------C----------------CTTSHHHHHHHHHHHTTCEEEEECSS--
T ss_pred EEeCCEEEEEEEECCcCcCcccC------------C----------------CCCccHHHHHHHHHHcCCEEEEEeCC--
Confidence 99999999999999999999863 3 88999999999999999999999987
Q ss_pred eeEEEEEEeccc
Q 017683 350 GELNMFSVLLYS 361 (368)
Q Consensus 350 Gt~f~i~lP~~~ 361 (368)
||+|++.||+..
T Consensus 116 Gt~~~i~lP~~~ 127 (128)
T 3ehg_A 116 GTKLTMAIPNNS 127 (128)
T ss_dssp SEEEEEEEEC--
T ss_pred CEEEEEEEecCC
Confidence 999999999753
No 22
>3zxo_A Redox sensor histidine kinase response regulator; transferase; HET: MSE; 1.90A {Mycobacterium tuberculosis}
Probab=99.83 E-value=6.8e-21 Score=151.83 Aligned_cols=123 Identities=24% Similarity=0.232 Sum_probs=99.9
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHhhCCCCceEEecCC--CceeeecchhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEE
Q 017683 190 TKMSPVQVARNASEHARCVCLREYGSAPDFNIYGDP--SFTFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRI 267 (368)
Q Consensus 190 ~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~d~~~l~~vl~NLl~NAi~~~~~~~~~~~~~~~~I~i 267 (368)
+.+++.++++.++..+ .. ....+.+..+. ......++..|.+++.||+.||++|++ .+.|.|
T Consensus 3 ~~~~l~~~l~~~~~~~----~~---~~~~~~~~~~~~~~~~~~~~~~~l~~il~nll~NA~k~~~---------~~~i~i 66 (129)
T 3zxo_A 3 MVTRLRQRIDAAVAQF----AD---SGLRTSVQFVGPLSVVDSALADQAEAVVREAVSNAVRHAA---------ASTLTV 66 (129)
T ss_dssp --CCHHHHHHHHHHHH----SC---TTSEEEEEEESCGGGSCHHHHHHHHHHHHHHHHHCCCCSS---------CCEEEE
T ss_pred ccccHHHHHHHHHHHH----hh---cCceEEEEecCCcccCCHHHHHHHHHHHHHHHHHHHHhCC---------CceEEE
Confidence 5678988888888876 12 24455554333 333344588999999999999999983 478999
Q ss_pred EEEeCCCceEEEEeecCCCCCCCCcccccccccccCCCCCCcccccccCCCCCCccccCHHHHHHHHHHhCCeEEEEecC
Q 017683 268 IVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAADKGTMAGYGYGLPISRLYARYFGGDLQIISME 347 (368)
Q Consensus 268 ~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~~~~~~~~~~~g~GlGL~i~k~i~~~~gG~i~v~s~~ 347 (368)
.+...++ +.|.|.|+|+||+++. +|+||++|+.+++.|||++.+.+.+
T Consensus 67 ~~~~~~~-~~i~v~D~G~gi~~~~-------------------------------~GlGL~i~~~~~~~~gG~i~~~~~~ 114 (129)
T 3zxo_A 67 RVKVDDD-LCIEVTDNGRGMPDEF-------------------------------TGSGLTNLRQRAEQAGGEFTLASMP 114 (129)
T ss_dssp EEEESSE-EEEEEEECCCCCTTTT-------------------------------CSHHHHHHHHHHHHTTCEEEEEECT
T ss_pred EEEEcCC-EEEEEecCCCCCCccc-------------------------------CCcCHHHHHHHHHHcCCEEEEeeCC
Confidence 9998888 9999999999998762 5899999999999999999999998
Q ss_pred C-CeeEEEEEEecc
Q 017683 348 G-YGELNMFSVLLY 360 (368)
Q Consensus 348 g-~Gt~f~i~lP~~ 360 (368)
+ +||+|++.||+.
T Consensus 115 ~~~G~~~~i~lP~~ 128 (129)
T 3zxo_A 115 GASGTVLRWSAPLS 128 (129)
T ss_dssp TTCCEEEEEEEESC
T ss_pred CCCcEEEEEEecCC
Confidence 8 899999999975
No 23
>3zxq_A Hypoxia sensor histidine kinase response regulato; transferase; 1.90A {Mycobacterium tuberculosis}
Probab=99.81 E-value=5.1e-20 Score=145.71 Aligned_cols=120 Identities=23% Similarity=0.213 Sum_probs=94.8
Q ss_pred CHHHHHHHHHHHHHHHHHHhhCCCCceEEe--cCCCceeeecchhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEEEE
Q 017683 193 SPVQVARNASEHARCVCLREYGSAPDFNIY--GDPSFTFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVA 270 (368)
Q Consensus 193 ~l~~li~~~~~~~~~~~~~~~~~~~~i~~~--~~~~~~~~~d~~~l~~vl~NLl~NAi~~~~~~~~~~~~~~~~I~i~~~ 270 (368)
++.+.+++++..+ .. ....+.+. .+.......++..+.+++.|++.||++|++. +.|.|.+.
T Consensus 2 ~l~~~l~~~~~~~-----~~--~~~~~~~~~~~~~~~~~~~~~~~l~~il~nll~Na~k~~~~---------~~i~i~~~ 65 (124)
T 3zxq_A 2 GLRHRLDKVIDQL-----AI--PALHTTVQYTGPLSVVDTVLANHAEAVLREAVSNAVRHANA---------TSLAINVS 65 (124)
T ss_dssp CHHHHHHHHHHHH-----TT--TTSEEEEEEESCGGGCCHHHHHHHHHHHHHHHHHHHTCTTC---------CEEEEEEE
T ss_pred cHHHHHHHHHHHH-----Hh--cCceEEEEeeCccccccHHHHHHHHHHHHHHHHHHHHhCCC---------CEEEEEEE
Confidence 4556666666655 22 13444444 3333333345778999999999999999853 68999998
Q ss_pred eCCCceEEEEeecCCCCCCCCcccccccccccCCCCCCcccccccCCCCCCccccCHHHHHHHHHHhCCeEEEEecCCCe
Q 017683 271 DGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAADKGTMAGYGYGLPISRLYARYFGGDLQIISMEGYG 350 (368)
Q Consensus 271 ~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~~~~~~~~~~~g~GlGL~i~k~i~~~~gG~i~v~s~~g~G 350 (368)
..++ +.+.|+|+|+||+++ ..|+||++++.+++.|||++.+.+.+++|
T Consensus 66 ~~~~-~~i~v~D~G~gi~~~-------------------------------~~GlGL~~~~~~~~~~gG~i~~~~~~~~G 113 (124)
T 3zxq_A 66 VEDD-VRVEVVDDGVGISGD-------------------------------ITESGLRNLRQRADDAGGEFTVENMPTGG 113 (124)
T ss_dssp EEEE-EEEEEEECCCSSCGG-------------------------------GSHHHHHHHHHHHHHHTCEEEEEECTTSS
T ss_pred eCCC-EEEEEEECCCCCCcc-------------------------------ccccCHHHHHHHHHHhCCEEEEEEcCCCc
Confidence 8888 999999999999886 24899999999999999999999999999
Q ss_pred eEEEEEEecc
Q 017683 351 ELNMFSVLLY 360 (368)
Q Consensus 351 t~f~i~lP~~ 360 (368)
|+|++.||+.
T Consensus 114 ~~~~i~lP~~ 123 (124)
T 3zxq_A 114 TLLRWSAPLR 123 (124)
T ss_dssp EEEEEEEECC
T ss_pred EEEEEEEecC
Confidence 9999999975
No 24
>1th8_A Anti-sigma F factor; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: d.122.1.3 PDB: 1thn_A* 1til_A* 1l0o_A* 1tid_A*
Probab=99.77 E-value=5.5e-19 Score=143.80 Aligned_cols=107 Identities=20% Similarity=0.163 Sum_probs=87.3
Q ss_pred ecchhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEEEEeCCCceEEEEeecCCCCCCCCcccccccccccCCCCCCcc
Q 017683 231 YVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDEN 310 (368)
Q Consensus 231 ~d~~~l~~vl~NLl~NAi~~~~~~~~~~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~ 310 (368)
.|...+.+++.||+.||++|+.... .++.|.|.+...++.+.|.|.|+|+||+ .++++|++||+++..
T Consensus 35 ~~~~~l~~il~~l~~Nai~h~~~~~-----~~~~I~i~~~~~~~~~~i~V~D~G~g~~--~~~~~~~~~~~~~~~----- 102 (145)
T 1th8_A 35 DELTEIKTVVSEAVTNAIIHGYNND-----PNGIVSISVIIEDGVVHLTVRDEGVGIP--DIEEARQPLFTTKPE----- 102 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSTTC-----TTSEEEEEEEEETTEEEEEEEECSSCCS--CHHHHTCCC-----------
T ss_pred hhHHHHHHHHHHHHHHHHHHhcCCC-----CCCEEEEEEEEeCCEEEEEEEECCCCcC--hHHHhhcccccCCCC-----
Confidence 3567899999999999999985411 1478999998888999999999999999 789999999988753
Q ss_pred cccccCCCCCCccccCHHHHHHHHHHhCCeEEEEecCCCeeEEEEEEecccc
Q 017683 311 TDLAADKGTMAGYGYGLPISRLYARYFGGDLQIISMEGYGELNMFSVLLYSY 362 (368)
Q Consensus 311 ~~~~~~~~~~~g~GlGL~i~k~i~~~~gG~i~v~s~~g~Gt~f~i~lP~~~~ 362 (368)
..|.|+||++|+.+++ .+++.+.+++||+|++.||..+.
T Consensus 103 ---------~~~~GlGL~iv~~~~~----~i~~~~~~~~Gt~v~~~lp~~~~ 141 (145)
T 1th8_A 103 ---------LERSGMGFTIMENFMD----EVIVESEVNKGTTVYLKKHGIHH 141 (145)
T ss_dssp ----------CCCSCHHHHHHHHSS----EEEEEEETTTEEEEEEEECCC--
T ss_pred ---------CCCCcchHHHHHHHHh----eEEEEeCCCCCEEEEEEEecccc
Confidence 3589999999999987 89999999999999999998753
No 25
>1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A*
Probab=99.75 E-value=2e-18 Score=165.57 Aligned_cols=116 Identities=24% Similarity=0.347 Sum_probs=96.3
Q ss_pred eeeecchhHHHHHHHHHHHHHHHHHHhhcCCCCCCC---CEEEEEEeCC---CceEEEEeecCCCCCCCCcccccccccc
Q 017683 228 TFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAP---PIRIIVADGL---EDVTIKVSDEGGGIPRSGLPKIFTYLYS 301 (368)
Q Consensus 228 ~~~~d~~~l~~vl~NLl~NAi~~~~~~~~~~~~~~~---~I~i~~~~~~---~~~~i~V~D~G~Gi~~~~~~~if~~f~~ 301 (368)
.+..|+..|.+++.||+.||++|+.. ++ .|.|.+...+ +.+.|+|.|||+||+++.++++|++||+
T Consensus 25 ~~~~d~~~L~qvl~nLv~NAida~~~--------gg~~p~I~I~i~~~~~~~~~~~I~V~DnG~GI~~e~l~~iF~~f~~ 96 (471)
T 1mu5_A 25 GFPNPARALYQTVRELIENSLDATDV--------HGILPNIKITIDLIDDARQIYKVNVVDNGIGIPPQEVPNAFGRVLY 96 (471)
T ss_dssp TCSSHHHHHHHHHHHHHHHHHHTTGG--------GTCCCEEEEEEEEEETTTTEEEEEEECCSCCCCGGGHHHHHHCCCC
T ss_pred EEeCCHHHHHHHHHHHHHHHHHHhhc--------CCCceEEEEEEEECCCcCcEEEEEEEECCCCCCHHHHHHHhccccc
Confidence 45567889999999999999999876 34 7999887654 7899999999999999999999999987
Q ss_pred cCCCCCCcccccccCCCCCCccccCHHHHHHHHHHhCCe-EEEEecCCCee-EEEEEEecc
Q 017683 302 TARNPLDENTDLAADKGTMAGYGYGLPISRLYARYFGGD-LQIISMEGYGE-LNMFSVLLY 360 (368)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~g~GlGL~i~k~i~~~~gG~-i~v~s~~g~Gt-~f~i~lP~~ 360 (368)
+.... .....+|+|+||++|+.+++.|||. +++.|..+.|+ .|++.||+.
T Consensus 97 tsk~~---------~~~~~gg~GLGL~iv~~l~~~~gG~~i~v~S~~~~g~~~~~~~Lpl~ 148 (471)
T 1mu5_A 97 SSKYV---------NRQTRGMYGLGVKAAVLYSQMHQDKPIEIETSPVNSKRIYTFKLKID 148 (471)
T ss_dssp C-CCC---------CSCCSCSCTTTHHHHHHHHHHHCCCCEEEEEECTTCSEEEEEEEEEC
T ss_pred ccccc---------cccCCCCceeeHHHHHHHHHHhCCCceeEEEecCCCceEEEEEEecc
Confidence 65430 1133568999999999999999999 99999988776 777777654
No 26
>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae}
Probab=99.74 E-value=2.6e-18 Score=166.64 Aligned_cols=119 Identities=23% Similarity=0.298 Sum_probs=97.4
Q ss_pred CCceeeec-chhHHHHHHHHHHHHHHHHHHhhcCCCCCCC---CEEEEEEeCC---CceEEEEeecCCCCCCCCcccccc
Q 017683 225 PSFTFPYV-PSHLHLMVFELVKNSLRAVEERYMDSDKVAP---PIRIIVADGL---EDVTIKVSDEGGGIPRSGLPKIFT 297 (368)
Q Consensus 225 ~~~~~~~d-~~~l~~vl~NLl~NAi~~~~~~~~~~~~~~~---~I~i~~~~~~---~~~~i~V~D~G~Gi~~~~~~~if~ 297 (368)
++..+..+ +..|.+++.||+.||++|+.. ++ .|.|.+...+ +.+.|+|.|||+||+++.++++|+
T Consensus 20 ~~l~i~~~d~~~L~qvl~NLV~NAida~~~--------gg~~p~I~I~i~~~~~~~~~~~I~V~DnG~GI~~e~l~~iF~ 91 (530)
T 2zbk_B 20 PELAGFPNPARALYQTVRELIENSLDATDV--------HGILPNIKITIDLIDDARQIYKVNVVDNGIGIPPQEVPNAFG 91 (530)
T ss_dssp CGGGTCSSHHHHHHHHHHHHHHHHHTTTTT--------TTCCCCCEEEEEEEETTTTEEEEEEECCSCCCCGGGSHHHHT
T ss_pred CCceEEcCcHHHHHHHHHHHHHHHHHHHhc--------cCCCeEEEEEEEECCCcCceEEEEEEECCCCCCHHHHHHHhc
Confidence 34444444 489999999999999999876 45 8999987655 789999999999999999999999
Q ss_pred cccccCCCCCCcccccccCCCCCCccccCHHHHHHHHHHhCCe-EEEEecCCCee-EEEEEEecc
Q 017683 298 YLYSTARNPLDENTDLAADKGTMAGYGYGLPISRLYARYFGGD-LQIISMEGYGE-LNMFSVLLY 360 (368)
Q Consensus 298 ~f~~~~~~~~~~~~~~~~~~~~~~g~GlGL~i~k~i~~~~gG~-i~v~s~~g~Gt-~f~i~lP~~ 360 (368)
+||++.... .....+|+|+||++|+.+++.|||. +++.|..+.|+ .|++.||+.
T Consensus 92 ~f~~tsk~~---------~~~~~gg~GLGLsiv~~l~~~~gG~~I~V~S~~~~g~~~~~~~Lpl~ 147 (530)
T 2zbk_B 92 RVLYSSKYV---------NRQTRGMYGLGVKAAVLYSQMHQDKPIEIETSPVNSKRIYTFKLKID 147 (530)
T ss_dssp SCCCSCCCC---------CSCCSCSSSSHHHHHHHHHHHHCCCCEEEEEECTTCSEEEEEEEEEE
T ss_pred cccccCCcc---------cccCCCCccchHHHHHHHHHHhCCCceEEEEecCCCeEEEEEEEEec
Confidence 997765430 1134579999999999999999999 99999988776 777777653
No 27
>2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei}
Probab=99.59 E-value=8.5e-16 Score=151.01 Aligned_cols=120 Identities=29% Similarity=0.362 Sum_probs=94.3
Q ss_pred eeeecchhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEEEEeCC-CceEEEEeecCCCCCCCCcccccccccccCCCC
Q 017683 228 TFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGL-EDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNP 306 (368)
Q Consensus 228 ~~~~d~~~l~~vl~NLl~NAi~~~~~~~~~~~~~~~~I~i~~~~~~-~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~ 306 (368)
.+.+|+..|.+++.||+.||++|+... +..+.|.|.+..++ +.+.|+|.|||+|||++.++++|.+|+++.+-.
T Consensus 30 ~~~~D~~~L~~Vl~ELV~NAIDa~~~~-----g~~~~I~V~i~~~~~~~~~I~V~DnG~GIp~e~l~~iF~~~~atskf~ 104 (621)
T 2q2e_B 30 GFDSAPRSLITTVKEAVDNALDACEEA-----GILPDILVQVERTGPDYVTVIIEDNGPGIVREQIPKVFAKLLYGSRFH 104 (621)
T ss_dssp SCSSHHHHHHHHHHHHHHHHHHHHTTT-----SCSCEEEECCEEETTTEEEEEEECCSCCCCGGGHHHHHSCCCCC--CC
T ss_pred EEecCHHHHHHHHHHHHHHHHHHHhhc-----CCCcEEEEEEEECCCcEEEEEEEECCCCCCHHHHHHHhhhhccCCccc
Confidence 466789999999999999999998751 00237888887776 788999999999999999999998886654320
Q ss_pred CCcccccccCCCCCCccccCHHHHHHHHHHhCCe-EEEEecCC---CeeEEEEEEecc
Q 017683 307 LDENTDLAADKGTMAGYGYGLPISRLYARYFGGD-LQIISMEG---YGELNMFSVLLY 360 (368)
Q Consensus 307 ~~~~~~~~~~~~~~~g~GlGL~i~k~i~~~~gG~-i~v~s~~g---~Gt~f~i~lP~~ 360 (368)
. .....+|+|+||++|+.+++.|||. |.+.|..+ .|++|++.+|..
T Consensus 105 ~--------~~~s~Gg~GlGLsiv~~ls~~~gG~~I~V~S~~~gg~~g~~~~~~lp~~ 154 (621)
T 2q2e_B 105 A--------LKQSRGQQGIGISAAVLYAQMTAGRHTKILSKTSPTAPAHYYELMINTS 154 (621)
T ss_dssp C--------CC-CCSSSSHHHHHHHHHHHHHTCCCCEEEEECSSSSCEEEEECCCCSS
T ss_pred c--------ccccCCCceechhhhhHHHHHhCCCceeEEeeccCCccceEEEEecchh
Confidence 0 0122468999999999999999999 89988765 377777777765
No 28
>1h7s_A PMS1 protein homolog 2; DNA repair, GHL ATPase, mismatch repair, HNPCC; 1.95A {Homo sapiens} SCOP: d.14.1.3 d.122.1.2 PDB: 1h7u_A* 1ea6_A*
Probab=98.86 E-value=4e-09 Score=97.93 Aligned_cols=83 Identities=25% Similarity=0.250 Sum_probs=54.5
Q ss_pred hHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEEEEeCCCceEEEEeecCCCCCCCCcccccccccccCCCCCCcccccc
Q 017683 235 HLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLA 314 (368)
Q Consensus 235 ~l~~vl~NLl~NAi~~~~~~~~~~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~~~~ 314 (368)
.+.+++.||++||++|. .+.|.|.+.. ++...|+|.|||+||++++++++|.+|++++....+..
T Consensus 34 ~~~~vl~eLv~NAiDA~----------a~~I~I~i~~-~~~~~I~V~DnG~Gi~~~~l~~~f~~~~tsK~~~~~dl---- 98 (365)
T 1h7s_A 34 SLSTAVKELVENSLDAG----------ATNIDLKLKD-YGVDLIEVSDNGCGVEEENFEGLTLKHHTSKIQEFADL---- 98 (365)
T ss_dssp CHHHHHHHHHHHHHHTT----------CSEEEEEEEG-GGTSEEEEEECSCCCCGGGSGGGGC----------CCT----
T ss_pred hHHHHHHHHHHHHHHCC----------CCEEEEEEEe-CCcEEEEEEECCCCcCHHHHHHHhhhccccccccccch----
Confidence 58899999999999974 3678888865 35578999999999999999999999998864300000
Q ss_pred cCCCCCCcc-ccCHHHHHHH
Q 017683 315 ADKGTMAGY-GYGLPISRLY 333 (368)
Q Consensus 315 ~~~~~~~g~-GlGL~i~k~i 333 (368)
......|. |+||+.+..+
T Consensus 99 -~~i~s~G~rG~gl~si~~v 117 (365)
T 1h7s_A 99 -TQVETFGFRGEALSSLCAL 117 (365)
T ss_dssp -TCSEEESSSSSHHHHHHHH
T ss_pred -hcccccCCCCchhhhhhhh
Confidence 00011243 8888877654
No 29
>3na3_A DNA mismatch repair protein MLH1; MUTL protein homolog 1, DNA damag repair, structural genomics consortium, SGC, protein bindin; HET: DNA ATP; 2.50A {Homo sapiens}
Probab=98.81 E-value=9.4e-09 Score=94.26 Aligned_cols=60 Identities=22% Similarity=0.311 Sum_probs=52.2
Q ss_pred hHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEEEEeCCCceEEEEeecCCCCCCCCcccccccccccCCC
Q 017683 235 HLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARN 305 (368)
Q Consensus 235 ~l~~vl~NLl~NAi~~~~~~~~~~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~ 305 (368)
.+.+++.||+.||++|. .+.|.|.+.. ++...|+|.|||+|||+++++++|++|+++|..
T Consensus 28 ~~~~vv~eLv~NAidA~----------a~~I~I~i~~-~~~~~I~V~DnG~GI~~~~l~~~~~~~~tsK~~ 87 (348)
T 3na3_A 28 RPANAIKEMIENCLDAK----------STSIQVIVKE-GGLKLIQIQDNGTGIRKEDLDIVCERFTTSKLQ 87 (348)
T ss_dssp SHHHHHHHHHHHHHHTT----------CSEEEEEEEG-GGTSEEEEEECSCCCCGGGGGTTTSTTCCSSCC
T ss_pred CHHHHHHHHHHHHHHcC----------CCEEEEEEEe-CCEEEEEEEECCcCcChHHhhhhhccccccccC
Confidence 48899999999999983 4688888864 445679999999999999999999999999865
No 30
>1b63_A MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A {Escherichia coli K12} SCOP: d.14.1.3 d.122.1.2 PDB: 1nhh_A* 1nhi_A* 1bkn_A 1nhj_A* 1b62_A*
Probab=98.75 E-value=9e-09 Score=94.65 Aligned_cols=84 Identities=27% Similarity=0.234 Sum_probs=62.3
Q ss_pred hHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEEEEeCCCceEEEEeecCCCCCCCCcccccccccccCCCCCCcccccc
Q 017683 235 HLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLA 314 (368)
Q Consensus 235 ~l~~vl~NLl~NAi~~~~~~~~~~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~~~~ 314 (368)
.+.+++.||++||++|. ...|.|.+.. ++...|+|.|||+||++++++.+|.+|++.+....+ +.
T Consensus 24 ~~~~~v~ELi~NaidA~----------a~~I~I~i~~-~~~~~i~V~DnG~Gi~~~~l~~~~~~~~tsK~~~~~---d~- 88 (333)
T 1b63_A 24 RPASVVKELVENSLDAG----------ATRIDIDIER-GGAKLIRIRDNGCGIKKDELALALARHATSKIASLD---DL- 88 (333)
T ss_dssp SHHHHHHHHHHHHHHTT----------CSEEEEEEEG-GGTSEEEEEECSCCCCGGGHHHHHSTTCCSSCCSHH---HH-
T ss_pred CHHHHHHHHHHHHHHCC----------CCeEEEEEEe-CCceEEEEEEcCCCcCHHHHHHhhhcccccCccccc---hh-
Confidence 48899999999999975 2678888875 334689999999999999999999999887632000 00
Q ss_pred cCCCCCCccccCHHHHHHH
Q 017683 315 ADKGTMAGYGYGLPISRLY 333 (368)
Q Consensus 315 ~~~~~~~g~GlGL~i~k~i 333 (368)
......++.|+||+.+..+
T Consensus 89 ~~~~~~G~~G~gl~si~~v 107 (333)
T 1b63_A 89 EAIISLGFRGEALASISSV 107 (333)
T ss_dssp HTCCSSCCSSCHHHHHHTT
T ss_pred hhccccCccccchhhhhcC
Confidence 0012345689999987654
No 31
>1kij_A DNA gyrase subunit B; topoisomerase, gyrase B-coumarin complex, isomerase; HET: DNA NOV; 2.30A {Thermus thermophilus} SCOP: d.14.1.3 d.122.1.2
Probab=98.73 E-value=3.6e-09 Score=99.15 Aligned_cols=86 Identities=22% Similarity=0.275 Sum_probs=59.9
Q ss_pred ecchhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEEEEeCCCceEEEEeecCCCCCCCCccc--------cccccccc
Q 017683 231 YVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPK--------IFTYLYST 302 (368)
Q Consensus 231 ~d~~~l~~vl~NLl~NAi~~~~~~~~~~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~--------if~~f~~~ 302 (368)
++...+..++.|+++||+++ + .+.|.|.+..++ .|+|.|||+|||++..++ +|.+|+++
T Consensus 32 g~~~~v~Elv~N~iD~a~~~----~------~~~I~V~i~~~~---~i~V~DnG~GIp~~~~~~~~~~~~e~if~~~~~~ 98 (390)
T 1kij_A 32 GYHHLFKEILDNAVDEALAG----Y------ATEILVRLNEDG---SLTVEDNGRGIPVDLMPEEGKPAVEVIYNTLHSG 98 (390)
T ss_dssp HHHHHHHHHHHHHHHHHHTT----S------CCEEEEEECTTS---CEEEEECSSCCCCSEETTTTEEHHHHHHHSSCEE
T ss_pred hHHHHHHHHHHHHHHHhhhC----C------CCEEEEEEEcCC---EEEEEEcCCCCCHHHhhhccccchhhheeeeeec
Confidence 44555666666666666552 1 578999886543 799999999999999888 89888776
Q ss_pred CCCCCCcccccccCCCCCCccccCHHHHHHHHH
Q 017683 303 ARNPLDENTDLAADKGTMAGYGYGLPISRLYAR 335 (368)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~g~GlGL~i~k~i~~ 335 (368)
..-. .+......++.|+||++|+.+++
T Consensus 99 ~kf~------~~~~~~s~G~~G~Gls~v~als~ 125 (390)
T 1kij_A 99 GKFE------QGAYKVSGGLHGVGASVVNALSE 125 (390)
T ss_dssp SGGG------GSSCCCCSCSSTTSHHHHHHTEE
T ss_pred cccc------CccccccCCCCCcceeeeccccc
Confidence 4210 00001124569999999999986
No 32
>3ke6_A Protein RV1364C/MT1410; anti-sigma factor, anti-sigma factor antagonist, phosphatase serine kinase, ATPase, unknown function; 2.60A {Mycobacterium tuberculosis}
Probab=98.71 E-value=2e-08 Score=94.98 Aligned_cols=91 Identities=19% Similarity=0.162 Sum_probs=63.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEEEEeC-CCceEEEEeecCCCCCCCCcccccccccccCCCCCCcccc
Q 017683 234 SHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADG-LEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTD 312 (368)
Q Consensus 234 ~~l~~vl~NLl~NAi~~~~~~~~~~~~~~~~I~i~~~~~-~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~~ 312 (368)
..+..++.||+.||++|..+ ...++.|.|.+... ++.+.|.|.|+|+|+|+. ..
T Consensus 296 ~~~~l~v~El~~Nav~Ha~~-----~~~~g~i~v~~~~~~~~~l~i~V~D~G~g~~~~-----------~~--------- 350 (399)
T 3ke6_A 296 ADIVHAISEFVENAVEHGYA-----TDVSKGIVVAAALAGDGNVRASVIDRGQWKDHR-----------DG--------- 350 (399)
T ss_dssp HHHHHHHHHHHHHHHHHBCC-----SCCTTCEEEEEEECTTSEEEEEEEESCBC--------------------------
T ss_pred HHHHHHHHHHHHHHHHhccc-----CCCCceEEEEEEEcCCCEEEEEEEECCCCCCCC-----------CC---------
Confidence 46889999999999999732 11148899999876 568999999999999986 11
Q ss_pred cccCCCCCCccccCHHHHHHHHHHhCCeEEEEecCCCeeEEEEEEeccc
Q 017683 313 LAADKGTMAGYGYGLPISRLYARYFGGDLQIISMEGYGELNMFSVLLYS 361 (368)
Q Consensus 313 ~~~~~~~~~g~GlGL~i~k~i~~~~gG~i~v~s~~g~Gt~f~i~lP~~~ 361 (368)
..+.|+||.+++.+++.++ +.+. +.|+++++.+|+..
T Consensus 351 -------~~~~G~GL~lv~~l~~~~~----~~~~-~~G~~v~~~~~~~~ 387 (399)
T 3ke6_A 351 -------ARGRGRGLAMAEALVSEAR----IMHG-AGGTTATLTHRLSR 387 (399)
T ss_dssp -------------CHHHHHTTSSEEE----EEEE-TTEEEEEEEEECEE
T ss_pred -------CCCCCcHHHHHHHHHHhee----eEEC-CCcEEEEEEEEcCC
Confidence 1377999999999887544 5544 45999999998754
No 33
>3h4l_A DNA mismatch repair protein PMS1; ATP binding, DNA repair, DNA damage, nucleus, phosphop DNA binding protein, protein binding; HET: DNA ANP; 2.50A {Saccharomyces cerevisiae}
Probab=98.63 E-value=4.8e-08 Score=90.37 Aligned_cols=60 Identities=33% Similarity=0.341 Sum_probs=49.2
Q ss_pred hHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEEEEeCCCceEEEEeecCCCCCCCCcccccccccccCCC
Q 017683 235 HLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARN 305 (368)
Q Consensus 235 ~l~~vl~NLl~NAi~~~~~~~~~~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~ 305 (368)
.+.+++.||++||++|. ...|.|.+. .++...|+|.|||+||+++.++.+|++|++++..
T Consensus 25 ~~~~vv~eLv~NaiDA~----------a~~I~I~i~-~~~~~~i~V~DnG~Gi~~~~l~~~~~~~~tsK~~ 84 (367)
T 3h4l_A 25 DLTTAVKELVDNSIDAN----------ANQIEIIFK-DYGLESIECSDNGDGIDPSNYEFLALKHYTSKIA 84 (367)
T ss_dssp SHHHHHHHHHHHHHHTT----------CSEEEEEEE-TTTTSEEEEEECSCCCCGGGTTTTTCCEEC----
T ss_pred CHHHHHHHHHHHHHHCC----------CCEEEEEEE-eCCEEEEEEEECCCCcChhHhccceeccccCcCC
Confidence 48899999999999974 367888875 4556789999999999999999999999998854
No 34
>2wer_A ATP-dependent molecular chaperone HSP82; ATPase, ATP-binding, phosphoprotein, stress respo nucleotide-binding; HET: RDC; 1.60A {Saccharomyces cerevisiae} PDB: 2weq_A* 2wep_A* 1zwh_A* 1zw9_A* 2fxs_A* 3c11_A* 3c0e_A* 2yge_A* 2ygf_A* 2akp_A
Probab=98.47 E-value=5.5e-08 Score=84.07 Aligned_cols=121 Identities=17% Similarity=0.242 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHHHHHhhcC----C--CCCCCCEEEEEEeCCCceEEEEeecCCCCCCCCcccccccccccCCC-CCCcc
Q 017683 238 LMVFELVKNSLRAVEERYMD----S--DKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARN-PLDEN 310 (368)
Q Consensus 238 ~vl~NLl~NAi~~~~~~~~~----~--~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~-~~~~~ 310 (368)
.++.+||+||++|....... . .+.++.+.|.+..+++...|.|.|||+||+++++...|..+.+.... .....
T Consensus 29 ~~lrELI~NA~DA~a~~~~~~~~~~~~~~~~~~i~I~i~~~~~~~~i~I~DnG~GMs~edl~~~l~~ia~S~~~~f~~k~ 108 (220)
T 2wer_A 29 IFLREIVSNASDALDKIRYKSLSDPKQLETEPDLFIRITPKPEQKVLEIRDSGIGMTKAELINNLGTIAKSGTKAFMEAL 108 (220)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCGGGGGGCCCCCEEEEEEGGGTEEEEEECSCCCCHHHHHHHTTTSCCTTHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHhhcccCchhccCCCcEEEEEEECCCCCEEEEEEcCCCCCHHHHHHHHHhHhcccchhHHHHh
Confidence 68999999999998742100 0 00024555555444456689999999999999987777554322100 00000
Q ss_pred cccccCCCCCCccccCHHHHHHHHHH------------------hCCeEEEEe-----cCCCeeEEEEEEec
Q 017683 311 TDLAADKGTMAGYGYGLPISRLYARY------------------FGGDLQIIS-----MEGYGELNMFSVLL 359 (368)
Q Consensus 311 ~~~~~~~~~~~g~GlGL~i~k~i~~~------------------~gG~i~v~s-----~~g~Gt~f~i~lP~ 359 (368)
..+......+..|+|++.+..+++. .+|.+.+.. ..+.||++++.|+-
T Consensus 109 -~~~~~~~~iG~fGiG~~s~~~~~~~v~v~S~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~GT~I~l~Lk~ 179 (220)
T 2wer_A 109 -SAGADVSMIGQFGVGFYSLFLVADRVQVISKSNDDEQYIWESNAGGSFTVTLDEVNERIGRGTILRLFLKD 179 (220)
T ss_dssp -TTTCCGGGGGGGTCGGGGGGGTEEEEEEEEECTTSCCEEEEECSSSEEEEEECSSSCCCSSEEEEEEEECT
T ss_pred -hccCCcccCCccchhHHHhhhcCCeeEEEEecCCCceeEEEeCCCCceEeecccCCCCCCCCeEEEEEECc
Confidence 0000011233478888766544320 124455543 23679999999864
No 35
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A
Probab=98.43 E-value=3.4e-06 Score=70.91 Aligned_cols=156 Identities=7% Similarity=0.030 Sum_probs=89.5
Q ss_pred CCchhHHHHHHHHHHHHHhccCcHHHHHHHHHHHhhccCcccccCChHHHHHHHHHHHHhhHHHHHhHHHHhhhcCCCCC
Q 017683 102 RSTSDERDFTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIGQHVELHNPNPP 181 (368)
Q Consensus 102 ~~~~~~~~~~~~l~~~~~~~~~~l~~l~~~~~el~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~li~~ll~l~~~~~~ 181 (368)
.++.....+.+.++..+||+.|.|..|.+.++.= ..+++..|+..+....... . .+.+...
T Consensus 13 ~~l~~~~~~~~~LR~qrHdf~NkLqvI~GLlql~-----------~ydea~~yI~~~~~~~q~~---~----~~~~i~~- 73 (192)
T 1ixm_A 13 SDTALTNELIHLLGHSRHDWMNKLQLIKGNLSLQ-----------KYDRVFEMIEEMVIDAKHE---S----KLSNLKT- 73 (192)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHHHHH---H----HHHTTTC-
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHHHHHH---H----HHHhCCC-
Confidence 4566667788899999999999999998877642 2457777777654433322 1 1222210
Q ss_pred CCcccccccCCCHHHHHHHHHHHHHHHHHHhhCCCCceEE-ecCCCceeeecchhHHHHHHHHHHHHHHHHHHhhcCCCC
Q 017683 182 PHCIGYIDTKMSPVQVARNASEHARCVCLREYGSAPDFNI-YGDPSFTFPYVPSHLHLMVFELVKNSLRAVEERYMDSDK 260 (368)
Q Consensus 182 ~~~~~~~~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~~d~~~l~~vl~NLl~NAi~~~~~~~~~~~~ 260 (368)
-.+..++- .... + .....+.+ ..+++..+...| .-+.||+.||..+...... ..
T Consensus 74 ----------P~la~lLl-------~K~~-~-a~e~~i~lev~~~~s~l~~~~----~~lgnLi~na~~Ai~~~~~--~~ 128 (192)
T 1ixm_A 74 ----------PHLAFDFL-------TFNW-K-THYMTLEYEVLGEIKDLSAYD----QKLAKLMRKLFHLFDQAVS--RE 128 (192)
T ss_dssp ----------HHHHHHHH-------HGGG-S-CCSSEEEEEEESSCCCCTTTH----HHHHHHHHHHHHHHHHHBC--TT
T ss_pred ----------HHHHHHHH-------HHHH-H-hccCCeEEEEecCccccCCCc----HHHHHHHHHHHHHHHhhhc--cC
Confidence 01222211 1111 1 12445555 223222222223 3458888888887754200 01
Q ss_pred CCCCEEEEEEeC--CCceEEEEeecCCCCCCCCcccccccccc
Q 017683 261 VAPPIRIIVADG--LEDVTIKVSDEGGGIPRSGLPKIFTYLYS 301 (368)
Q Consensus 261 ~~~~I~i~~~~~--~~~~~i~V~D~G~Gi~~~~~~~if~~f~~ 301 (368)
..+.|.|.+... ++.+.|.|.|+|++|+++.++++|+..|+
T Consensus 129 ~~~~I~i~i~~~~~~~~l~i~V~d~G~~i~~e~~~~if~~~~~ 171 (192)
T 1ixm_A 129 SENHLTVSLQTDHPDRQLILYLDFHGAFADPSAFDDIRQNGYE 171 (192)
T ss_dssp SCCEEEEEEECCCSSSSCEEEEEEESCBSCGGGCC--------
T ss_pred CCCeEEEEEEEecCCCEEEEEEEeCCCCCCHHHHHHHHhCCCC
Confidence 157899999887 78999999999999999999999986554
No 36
>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A* 1u0y_A* 1yt2_A*
Probab=98.36 E-value=4.1e-08 Score=86.82 Aligned_cols=122 Identities=18% Similarity=0.231 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHHHHHHhhc-----CC-CCCCCCEEEEEEeCCCceEEEEeecCCCCCCCCcccccccc-cccCCCCCCcc
Q 017683 238 LMVFELVKNSLRAVEERYM-----DS-DKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYL-YSTARNPLDEN 310 (368)
Q Consensus 238 ~vl~NLl~NAi~~~~~~~~-----~~-~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f-~~~~~~~~~~~ 310 (368)
.+|.+||+||++|...... .+ .+..+.+.|.+..+.+...|.|.|||+||+++.+...|... ++.........
T Consensus 31 ifLrELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~i~~d~~~~~l~I~DnGiGMt~edl~~~l~tia~Sgtk~F~~kl 110 (269)
T 1qy5_A 31 IFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCDKEKNLLHVTDTGVGMTREELVKNLGTIAKSGTSEFLNKM 110 (269)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCTTTTTTCCCCCEEEEEETTTTEEEEEECSCCCCHHHHHHHHHSCCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhhccCchhccCCCceEEEEEEcCCceEEEEEECCCCCCHHHHHHHhhhhcccccHHHHHhh
Confidence 4789999999999863110 00 00124455555445556689999999999999876665432 22110000000
Q ss_pred ccc---c-cCCCCCCccccCHHHHHHHHH-----------------HhCCeEEEEec-----CCCeeEEEEEEec
Q 017683 311 TDL---A-ADKGTMAGYGYGLPISRLYAR-----------------YFGGDLQIISM-----EGYGELNMFSVLL 359 (368)
Q Consensus 311 ~~~---~-~~~~~~~g~GlGL~i~k~i~~-----------------~~gG~i~v~s~-----~g~Gt~f~i~lP~ 359 (368)
... + ......+..|+|++.+..++. ..||.+.+... .+.||++++.|+-
T Consensus 111 ~~~~~~~~~d~~~IG~fGvGfySaf~va~~v~V~Sk~~~~~~~~w~s~gg~~~i~~~~~~~~~~~GT~I~L~Lk~ 185 (269)
T 1qy5_A 111 TEAQEDGQSTSELIGQFGVGFYSAFLVADKVIVTSKHNNDTQHIWESDSNEFSVIADPRGNTLGRGTTITLVLKE 185 (269)
T ss_dssp HHHHHHTCCCHHHHHHTTCGGGGGGGTEEEEEEEEECTTSCCEEEEECSSCEEEEECTTCSCSSSEEEEEEEECG
T ss_pred hhcccccccchhhcCCccccHHHHhhccceEEEEEEecCCcEEEEEEeCCEEEEEeccCCCcCCCCeEEEEEEcc
Confidence 000 0 001112357888887765442 12255666543 4789999999875
No 37
>1yc1_A HSP 86, heat shock protein HSP 90-alpha; cell-cycle, cancer, drug design, cell cycle; HET: 4BC; 1.70A {Homo sapiens} SCOP: d.122.1.1 PDB: 1yc3_A* 1yc4_A*
Probab=98.29 E-value=5.2e-07 Score=79.68 Aligned_cols=121 Identities=19% Similarity=0.286 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHHHHHhhcC-----C-CCCCCCEEEEEEeCCCceEEEEeecCCCCCCCCcccccccccccCCCC-CCcc
Q 017683 238 LMVFELVKNSLRAVEERYMD-----S-DKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNP-LDEN 310 (368)
Q Consensus 238 ~vl~NLl~NAi~~~~~~~~~-----~-~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~-~~~~ 310 (368)
.+|.+||+||++|....... . ....+.|.|.+..+.+.-.|.|.|||.||+++++...|..+.+..... ....
T Consensus 71 ~~lrELI~NA~DA~ak~r~~~l~~~~~~~~~~~i~I~i~~d~~~~~I~I~DnG~GMs~edL~~~l~~ia~S~~~~f~~~l 150 (264)
T 1yc1_A 71 IFLRELISNSSDALDKIRYETLTDPSKLDSGKELHINLIPNKQDRTLTIVDTGIGMTKADLINNLGTIAKSGTKAFMEAL 150 (264)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCGGGGGGCCCCCEEEEEETTTTEEEEEECSCCCCHHHHHHHHHSCTTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhhhhccCccccCCCCeEEEEEEECCCeeEEEEEECCcCCCHHHHHHHHHhhccccchhhhhhh
Confidence 57899999999998631000 0 000245566665444455799999999999999877665543221100 0000
Q ss_pred cccccCCCCCCccccCHHHHHHHHHH------------------hCCeEEEEec----CCCeeEEEEEEec
Q 017683 311 TDLAADKGTMAGYGYGLPISRLYARY------------------FGGDLQIISM----EGYGELNMFSVLL 359 (368)
Q Consensus 311 ~~~~~~~~~~~g~GlGL~i~k~i~~~------------------~gG~i~v~s~----~g~Gt~f~i~lP~ 359 (368)
..+......+..|+|++.+..+++. .+|.+.+... .+.||+++|.|.-
T Consensus 151 -~~~~d~~~iG~fGiGf~S~f~va~~v~V~Sr~~~~~~~~w~~~~~~~~~i~~~~~~~~~~GT~I~l~Lk~ 220 (264)
T 1yc1_A 151 -QAGADISMIGQFGVGFYSAYLVAEKVTVITKHNDDEQYAWESSAGGSFTVRTDTGEPMGRGTKVILHLKE 220 (264)
T ss_dssp -HTTCCGGGGGGGTCGGGGHHHHEEEEEEEEECTTSCCEEEEECSTTEEEEEECCSSCCSSEEEEEEEECG
T ss_pred -ccccchhhcCCCCCCccccccCCCEEEEEEecCCCceEEEEEcCCceEEEeecCCCCCCCCeEEEEEECC
Confidence 0000112234578998877665531 1244555542 3679999998753
No 38
>2ior_A Chaperone protein HTPG; heat shock protein, HSP90; HET: ADP; 1.65A {Escherichia coli}
Probab=98.13 E-value=7.8e-07 Score=77.45 Aligned_cols=62 Identities=18% Similarity=0.272 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHhhc--------CCCCCCCCEEEEEEeCCCceEEEEeecCCCCCCCCcccccccccc
Q 017683 238 LMVFELVKNSLRAVEERYM--------DSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYS 301 (368)
Q Consensus 238 ~vl~NLl~NAi~~~~~~~~--------~~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~ 301 (368)
.++.+||+||++|...... ........|.|.+. .+...|.|.|||.||+++++...|..+.+
T Consensus 50 ~~lrELI~NA~DA~~~~r~~~~~~~~~~~~~~~~~I~i~~~--~~~~~i~I~DnG~GMs~edl~~~~~~ia~ 119 (235)
T 2ior_A 50 IFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFD--KDKRTLTISDNGVGMTRDEVIDHLGTIAK 119 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSCGGGGTTCCCCCEEEEEE--TTTTEEEEEECSSCCCHHHHHHHHTTCCC
T ss_pred HHHHHHHhCHHHHHHHHHhhhccCccccCCCceEEEEEEEc--CCceEEEEEECCCCCCHHHHHHHHHHHcc
Confidence 6899999999999853110 00000234555543 33346999999999999998887765543
No 39
>1s16_A Topoisomerase IV subunit B; two-domain protein complexed with ADPNP; HET: ANP; 2.10A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=98.04 E-value=6.8e-06 Score=76.79 Aligned_cols=83 Identities=18% Similarity=0.283 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEEEEeCCCceEEEEeecCCCCCCCC--------cccccccccccCCCCCC
Q 017683 237 HLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSG--------LPKIFTYLYSTARNPLD 308 (368)
Q Consensus 237 ~~vl~NLl~NAi~~~~~~~~~~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~--------~~~if~~f~~~~~~~~~ 308 (368)
.+++..|+.||+++....+ ...|.|.+..++ .|+|.|||+|||.+. ++.+|..++.+..-..
T Consensus 33 ~~lv~ElvdNsiD~a~~g~------a~~I~V~i~~~g---~I~V~DnG~GIp~~~~~~~~~~~~e~v~~~lhagsKf~~- 102 (390)
T 1s16_A 33 NHLGQEVIDNSVDEALAGH------AKRVDVILHADQ---SLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSN- 102 (390)
T ss_dssp HHHHHHHHHHHHHHHHTTC------CSEEEEEECTTS---CEEEEECSSCCCCSBCTTTCSBHHHHHHHCTTEESCSSS-
T ss_pred HHHHHHHHHHHHHHHhcCC------CCEEEEEEecCC---EEEEEECCCCcCcccccccCcchhhheeeeecccCCcCC-
Confidence 6777788888887765321 478999887654 799999999999998 5668888766532100
Q ss_pred cccccccCCCCCCc-cccCHHHHHHHHH
Q 017683 309 ENTDLAADKGTMAG-YGYGLPISRLYAR 335 (368)
Q Consensus 309 ~~~~~~~~~~~~~g-~GlGL~i~k~i~~ 335 (368)
.......| .|.||+.+..+.+
T Consensus 103 ------~~~~~sgGl~GvGls~vnalS~ 124 (390)
T 1s16_A 103 ------KNYQFSGGLHGVGISVVNALSK 124 (390)
T ss_dssp ------SSCSSCSCCSSCHHHHHHHTEE
T ss_pred ------CcccccCCccccchHHHHHhhc
Confidence 00111223 8999999988763
No 40
>2gqp_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, ligand, NECA, NPCA, adenosine; HET: PA7 PG4 1PE; 1.50A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1tc0_A* 1tbw_A* 1u0z_A* 1u2o_A* 1ysz_A* 1yt0_A* 1yt1_A* 2exl_A* 2fyp_A* 2gfd_A* 1tc6_A* 2h8m_A* 2hch_A* 2hg1_A* 3o2f_A* 2esa_A*
Probab=97.97 E-value=2e-06 Score=74.88 Aligned_cols=60 Identities=22% Similarity=0.354 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHhhc-----C---CCCCCCCEEEEEEeCCCceEEEEeecCCCCCCCCcccccccc
Q 017683 238 LMVFELVKNSLRAVEERYM-----D---SDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYL 299 (368)
Q Consensus 238 ~vl~NLl~NAi~~~~~~~~-----~---~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f 299 (368)
.+|.+||+||++|...... . .......|.|... .+.-.|.|.|||.||+++++...|...
T Consensus 35 ~~lrELI~NA~DA~ak~~~~~~~~~~~~~~~~~~~I~i~~d--~~~~~i~I~DnG~GMt~edl~~~l~~i 102 (236)
T 2gqp_A 35 IFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCD--KEKNLLHVTDTGVGMTREELVKNLGTI 102 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCTTTTTTCCCCCEEEEEE--TTTTEEEEEECSCCCCHHHHHHHHHCC
T ss_pred HHHHHHHHhHHHhhhhhhhhcccCcccccCCCceEEEEEEc--CCCCEEEEEECCcCCCHHHHHHHHhhh
Confidence 6789999999999863110 0 0001234555543 344579999999999999987777554
No 41
>3t0h_A Heat shock protein HSP 90-alpha; chaperone, ATPase; 1.20A {Homo sapiens} SCOP: d.122.1.1 PDB: 3r4m_A 3t0z_A* 3t10_A* 3t1k_A* 3t2s_A* 1uyl_A 1uy7_A* 1uy8_A* 1uy9_A* 1uyc_A* 1uyd_A* 1uye_A* 1uyf_A* 1uyg_A* 1uyh_A* 1uyk_A* 1uy6_A 2cdd_A* 2uwd_A* 2vci_A* ...
Probab=97.91 E-value=2.7e-06 Score=73.32 Aligned_cols=62 Identities=21% Similarity=0.309 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHhhc----CC--CCCCCCEEEEEEeCCCceEEEEeecCCCCCCCCcccccccc
Q 017683 238 LMVFELVKNSLRAVEERYM----DS--DKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYL 299 (368)
Q Consensus 238 ~vl~NLl~NAi~~~~~~~~----~~--~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f 299 (368)
.++..||+||++|...... .. ...++.+.|.+..+.+.-.|.|.|||.||+++++...|...
T Consensus 35 ~~lrELi~NA~DA~~k~r~~~~~~~~~~~~~~~i~I~I~~d~~~~~i~V~DnG~GMs~edl~~~l~~i 102 (228)
T 3t0h_A 35 IFLRELISNSSDALDKIRYESLTDPSKLDSGKELHINLIPNKQDRTLTIVDTGIGMTKADLINNLGTI 102 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCGGGGTTCCCCCEEEEEETTTTEEEEEECSCCCCHHHHHTGGGSC
T ss_pred HHHHHHHHCHHHHHHHHHhhhccCcccccCCCceEEEEEEeCCeeEEEEEeCCCCCCHHHHHHHHHhh
Confidence 6689999999999864210 00 00123556665545556679999999999999887766544
No 42
>3o0i_A HSP90AA1 protein; HSP90 heat-shock proteins, chaperone-inhibitor complex; HET: P54; 1.47A {Homo sapiens} PDB: 2fwz_A* 2fwy_A* 2h55_A*
Probab=97.79 E-value=4e-06 Score=73.17 Aligned_cols=121 Identities=18% Similarity=0.266 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHHHHHHhhc-----C-CCCCCCCEEEEEEeCCCceEEEEeecCCCCCCCCcccccccccccCCC-CCCcc
Q 017683 238 LMVFELVKNSLRAVEERYM-----D-SDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARN-PLDEN 310 (368)
Q Consensus 238 ~vl~NLl~NAi~~~~~~~~-----~-~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~-~~~~~ 310 (368)
.+|..||+||.+|...... . ....++.+.|.+..+.+.-.|.|.|||.||+++++...|....+.+.. ..+.
T Consensus 63 iflRELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~~~I~I~DnG~GMt~edl~~~l~~ia~S~~~~f~~~- 141 (256)
T 3o0i_A 63 IFLRELISNSSDALDKIRYESLTDPSKLDSGKELHINLIPNKQDRTLTIVDTGIGMTKADLINNLGTIAKSGTKAFMEA- 141 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCGGGGTTCCCCCEEEEEETTTTEEEEEECSCCCCHHHHHTHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHhChHHHHHHHHHHhccCchhccCCCceEEEEEEcCCceEEEEecCCCCcCHHHHHHHHHhhccccccchhhh-
Confidence 6789999999999864110 0 001124455555544556689999999999999886655432221100 0000
Q ss_pred cccccCCCCCCccccCHHHHHHHHH------H------------hCCeEEEEe----cCCCeeEEEEEEec
Q 017683 311 TDLAADKGTMAGYGYGLPISRLYAR------Y------------FGGDLQIIS----MEGYGELNMFSVLL 359 (368)
Q Consensus 311 ~~~~~~~~~~~g~GlGL~i~k~i~~------~------------~gG~i~v~s----~~g~Gt~f~i~lP~ 359 (368)
...+......+-.|+||+-+..+++ . -||.+.+.. ..+.||++++.|.-
T Consensus 142 L~~~~~~~~iG~fG~Gf~S~f~Vadkv~V~Sr~~~~~g~~w~s~gg~~~~v~~~~~~~~~~GT~I~l~LK~ 212 (256)
T 3o0i_A 142 LQAGADISMIGQFGVGFYSAYLVAEKVTVITKHNDDEQYAWESSAGGSFTVRTDTGEPMGRGTKVILHLKE 212 (256)
T ss_dssp HHTTCCGGGGGGGTCGGGGGGGTEEEEEEEEECTTSCEEEEEECSTTEEEEEECCSSCCSSEEEEEEEECG
T ss_pred hcccCCccccCCCcchHHHhhccCCeEEEEEcCCCCceEEEEEeccceEEEeeCCCCCCCCCcEEEEEEcC
Confidence 0000011224457888877655441 0 133445543 23679999988754
No 43
>4duh_A DNA gyrase subunit B; structure-based drug design, antibacterial, DNA gyrase B, GY isomerase-isomerase inhibitor complex; HET: DNA RLI; 1.50A {Escherichia coli} PDB: 1aj6_A* 1kzn_A* 3g7e_A*
Probab=97.73 E-value=6.9e-05 Score=64.13 Aligned_cols=86 Identities=26% Similarity=0.335 Sum_probs=54.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEEEEeCCCceEEEEeecCCCCCCCCcc--------cccccccccCCC
Q 017683 234 SHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLP--------KIFTYLYSTARN 305 (368)
Q Consensus 234 ~~l~~vl~NLl~NAi~~~~~~~~~~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~--------~if~~f~~~~~~ 305 (368)
.-|..++..++.||+++....+ ...|.|.+..++ .|+|.|||.|||.+..+ -+|.....+.+-
T Consensus 34 ~gl~~lv~ElvdNsiDea~~g~------~~~I~V~i~~~g---~i~V~DnGrGIp~~~~~~~~~~~~e~i~t~lhag~Kf 104 (220)
T 4duh_A 34 TGLHHMVFEVVDNAIDEALAGH------CKEIIVTIHADN---SVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKF 104 (220)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSC------CCEEEEEECTTS---CEEEEECSSCCCCSEETTTTEEHHHHHHHSTTCSSCC
T ss_pred ccHHHHHHHHHHHHHHHHhcCC------CCEEEEEEeCCC---cEEEEECCcCcccccccccCcchhhheeeecccCCCc
Confidence 4689999999999999876532 477888887543 69999999999998643 344332222111
Q ss_pred CCCcccccccCCCCCCccccCHHHHHHHH
Q 017683 306 PLDENTDLAADKGTMAGYGYGLPISRLYA 334 (368)
Q Consensus 306 ~~~~~~~~~~~~~~~~g~GlGL~i~k~i~ 334 (368)
. .+......+=.|.|++.+..+.
T Consensus 105 d------~~~yk~SgGlhGvG~svvNAlS 127 (220)
T 4duh_A 105 D------DNSYKVSGGLHGVGVSVVNALS 127 (220)
T ss_dssp C------TTC--------CCCHHHHHHTE
T ss_pred C------CCccccccCccceecchhcccc
Confidence 0 0000111223789999888765
No 44
>1ei1_A DNA gyrase B, GYRB; ATPase domain, dimer, isomerase; HET: DNA ANP; 2.30A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=97.73 E-value=4.7e-05 Score=71.05 Aligned_cols=86 Identities=26% Similarity=0.335 Sum_probs=58.7
Q ss_pred hHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEEEEeCCCceEEEEeecCCCCCCCCcc--------cccccccccCCCC
Q 017683 235 HLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLP--------KIFTYLYSTARNP 306 (368)
Q Consensus 235 ~l~~vl~NLl~NAi~~~~~~~~~~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~--------~if~~f~~~~~~~ 306 (368)
-+..++.+|+.||+++....+ ...|.|.+..++ .|+|.|||.|||.+..+ -+|..++.+..-.
T Consensus 34 gl~~lv~ElvdNsiDea~~g~------a~~I~V~i~~~g---~I~V~DnG~GIp~~~~~~~~~~~~elv~~~lhagsKf~ 104 (391)
T 1ei1_A 34 GLHHMVFEVVDNAIDEALAGH------CKEIIVTIHADN---SVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFD 104 (391)
T ss_dssp HHHHHHHHHHHHHHHHHHTTC------CCEEEEEECTTS---CEEEEECSSCCCCSBCTTTSSBHHHHHHHSTTEESCSS
T ss_pred CHHHHHHHHHHhHHHHHhcCC------CCEEEEEEeCCC---EEEEEECCCCcccCcccccCcchHHHhheeccccCCcC
Confidence 689999999999999875522 478999887654 79999999999998744 3676555442210
Q ss_pred CCcccccccCCCCCCccccCHHHHHHHHH
Q 017683 307 LDENTDLAADKGTMAGYGYGLPISRLYAR 335 (368)
Q Consensus 307 ~~~~~~~~~~~~~~~g~GlGL~i~k~i~~ 335 (368)
. +......+=.|.||+.+..+.+
T Consensus 105 ~------~~~~vSgGl~GvGls~vnalS~ 127 (391)
T 1ei1_A 105 D------NSYKVSGGLHGVGVSVVNALSQ 127 (391)
T ss_dssp S------SSCSSCSCCSSCHHHHHHHTEE
T ss_pred C------CcccccCCccccchHHHHHhcC
Confidence 0 0001111227999999988774
No 45
>3peh_A Endoplasmin homolog; structural genomics, structural genomics consortium, SGC, HE protein, chaperone, ATP binding; HET: IBD; 2.75A {Plasmodium falciparum 3D7} PDB: 3pej_A*
Probab=97.72 E-value=1e-05 Score=71.35 Aligned_cols=122 Identities=18% Similarity=0.196 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHHHHHhhc----CC--CCCCCCEEEEEEeCCCceEEEEeecCCCCCCCCcccccccc-cccCCCCCCcc
Q 017683 238 LMVFELVKNSLRAVEERYM----DS--DKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYL-YSTARNPLDEN 310 (368)
Q Consensus 238 ~vl~NLl~NAi~~~~~~~~----~~--~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f-~~~~~~~~~~~ 310 (368)
..|..||+||.+|...... .. .+..+.+.|.+..+.+.-.|.|.|||+||+++.+...+... .+.........
T Consensus 49 ifLRELIsNA~DA~~k~r~~~l~d~~~~~~~~~l~I~I~~d~~~~tLtI~DNGiGMt~edL~~~LgtIa~Sgtk~f~e~l 128 (281)
T 3peh_A 49 VFLRELISNAADALEKIRFLSLSDESVLGEEKKLEIRISANKEKNILSITDTGIGMTKVDLINNLGTIAKSGTSNFLEAI 128 (281)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHTTCGGGGTTCCCCCEEEEEETTTTEEEEEECSCCCCHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHhChHHHHHHHHHHhcCCchhccCCCceEEEEEEcCCCcEEEEEeCCCCCCHHHHHHHHHHHHhHhhhhHHHhh
Confidence 5678999999999864110 00 01123444444444444578999999999999876443211 11100000000
Q ss_pred cccccCCCCCCccccCHHHHHHHHHH------h------------CCeEEEEec-----CCCeeEEEEEEec
Q 017683 311 TDLAADKGTMAGYGYGLPISRLYARY------F------------GGDLQIISM-----EGYGELNMFSVLL 359 (368)
Q Consensus 311 ~~~~~~~~~~~g~GlGL~i~k~i~~~------~------------gG~i~v~s~-----~g~Gt~f~i~lP~ 359 (368)
...+......+..|+|++-|..+++. + ||...+... .+.||++++.|.-
T Consensus 129 ~~~~~d~~~IGqFGVGFySaf~vadkV~V~Sk~~~~~~~~Wes~g~g~fti~~~~~~~~~~~GT~I~L~Lke 200 (281)
T 3peh_A 129 SKSGGDMSLIGQFGVGFYSAFLVADKVIVYTKNNDDEQYIWESTADAKFTIYKDPRGATLKRGTRISLHLKE 200 (281)
T ss_dssp HHTTCCSTTTTTTTCGGGGGGGTEEEEEEEEECTTSCCEEEEEETTSCEEEEECTTCSTTSSEEEEEEEECG
T ss_pred hccccccccccccCccchhhccccCEEEEEEecCCCCEEEEEECCCccEEEEEcCCCCCCCCCeEEEEEECC
Confidence 00000123356778888777655321 1 234455432 3679999988863
No 46
>1y4s_A Chaperone protein HTPG; HSP90, molecular chaperone, ATPase; HET: ADP; 2.90A {Escherichia coli} PDB: 1y4u_A
Probab=97.66 E-value=5.1e-05 Score=73.79 Aligned_cols=120 Identities=17% Similarity=0.217 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHHHHHhhc--------CCCCCCCCEEEEEEeCCCceEEEEeecCCCCCCCCcccccccccccC-CCCCC
Q 017683 238 LMVFELVKNSLRAVEERYM--------DSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTA-RNPLD 308 (368)
Q Consensus 238 ~vl~NLl~NAi~~~~~~~~--------~~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~-~~~~~ 308 (368)
.+|.+||+||++|...... ........|.|.+..++ -.|+|.|||+||+++++...|....+.. ....+
T Consensus 30 ifLrELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~--~~I~I~DnGiGMt~edl~~~l~tiA~Sg~~~f~e 107 (559)
T 1y4s_A 30 IFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDKDK--RTLTISDNGVGMTRDEVIDHLGTIAKSGTKSFLE 107 (559)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCGGGGCSCCCCCEEEEEETTT--TEEEEEECSSCCCHHHHHHHHSCCSCCCCCCTTC
T ss_pred HHHHHHHHHHHHHhHhHHHhhccCchhccCCCccEEEEEEeCCC--cEEEEEECCCCCCHHHHHHHHhhhcccccHHHHH
Confidence 6789999999999843110 00011245666664433 5799999999999998776665432221 11000
Q ss_pred ccccc-ccCCCCCCccccCHHHHHHHHH-------Hh--------------CCeEEEEe--cCCCeeEEEEEEec
Q 017683 309 ENTDL-AADKGTMAGYGYGLPISRLYAR-------YF--------------GGDLQIIS--MEGYGELNMFSVLL 359 (368)
Q Consensus 309 ~~~~~-~~~~~~~~g~GlGL~i~k~i~~-------~~--------------gG~i~v~s--~~g~Gt~f~i~lP~ 359 (368)
...+. .......+..|+|++-+..+++ .. +|...+.. ..+.||++++.|.-
T Consensus 108 ~l~~~~~~~~~~iG~fGvGfyS~f~VadkV~V~Sr~~~~~~~~~~~w~s~g~~~~~i~~~~~~~~GT~I~L~Lk~ 182 (559)
T 1y4s_A 108 SLGSDQAKDSQLIGQFGVGFYSAFIVADKVTVRTRAAGEKPENGVFWESAGEGEYTVADITKEDRGTEITLHLRE 182 (559)
T ss_dssp C--------CCCCSSCCCSGGGHHHHEEEEEEEEECSSSCGGGEEEEEECSSSEEEEEEECCCSCEEEEEEEECT
T ss_pred HhhccccccccccCCCCcchhhhhhccCeEEEEEcCCCCCCCeeEEEEEeCCCeeEEeECCCCCCCeEEEEEEcc
Confidence 00000 0122345667999877766642 11 23344442 34679999988753
No 47
>3nmq_A Heat shock protein HSP 90-beta; ATPase, chaperone-chaperone inhibitor complex; HET: 7PP; 2.20A {Homo sapiens} SCOP: d.122.1.1
Probab=97.62 E-value=8.7e-06 Score=70.26 Aligned_cols=121 Identities=19% Similarity=0.278 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHHHHHhhc----C-C-CCCCCCEEEEEEeCCCceEEEEeecCCCCCCCCcccccc-cccccCCCCCCcc
Q 017683 238 LMVFELVKNSLRAVEERYM----D-S-DKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFT-YLYSTARNPLDEN 310 (368)
Q Consensus 238 ~vl~NLl~NAi~~~~~~~~----~-~-~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~-~f~~~~~~~~~~~ 310 (368)
..|..||+||.+|...... . . .+.++.+.|.+..+.+...|.|.|||.||+++++...+. ..++.+....+.
T Consensus 42 ifLRELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~~~L~I~DnGiGMt~edL~~~LgtIA~Sgtk~f~e~- 120 (239)
T 3nmq_A 42 IFLRELISNASDALDKIRYESLTDPSKLDSGKELKIDIIPNPQERTLTLVDTGIGMTKADLINNLGTIAKSGTKAFMEA- 120 (239)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCGGGGTTCCCCCEEEEEETTTTEEEEEECSCCCCHHHHHTHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHhChHHHHHHHHHHhccCchhccCCCceEEEEEEeCCccEEEEEeCCCCCCHHHHHHHHHHHhcccchhhhhh-
Confidence 6788999999999864210 0 0 011234555554444556799999999999998744332 111110000000
Q ss_pred cccccCCCCCCccccCHHHHHHHHH------Hh------------CCeEEEEec----CCCeeEEEEEEec
Q 017683 311 TDLAADKGTMAGYGYGLPISRLYAR------YF------------GGDLQIISM----EGYGELNMFSVLL 359 (368)
Q Consensus 311 ~~~~~~~~~~~g~GlGL~i~k~i~~------~~------------gG~i~v~s~----~g~Gt~f~i~lP~ 359 (368)
...+......+..|+|++-+..+++ .+ +|..++... .+.||++++.|.-
T Consensus 121 ~~~~~d~~~IGqFGvGfySaf~vadkv~V~Sk~~~~~~~~W~s~~~g~fti~~~~~~~~~~GT~I~L~lk~ 191 (239)
T 3nmq_A 121 LQAGADISMIGQFGVGFYSAYLVAEKVVVITKHNDDEQYAWESSAGGSFTVRADHGEPIGRGTKVILHLKE 191 (239)
T ss_dssp HHTTCCGGGGGGGTCGGGGGGGTEEEEEEEEECTTSCCEEEEECSTTEEEEEECCSSCCSSEEEEEEEECG
T ss_pred hcccCCcccccccCcccccccccCCEEEEEEeeCCCceeEEEECCCCcEEEEecCCCcCCCCCEEEEEECC
Confidence 0000011234567888877765542 11 234445432 2578998888763
No 48
>2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae}
Probab=97.62 E-value=3.5e-05 Score=76.27 Aligned_cols=119 Identities=19% Similarity=0.251 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHHHHHhhcC--------CCCCCCCEEEEEEeCCCceEEEEeecCCCCCCCCcccccccc-cccCCCCCC
Q 017683 238 LMVFELVKNSLRAVEERYMD--------SDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYL-YSTARNPLD 308 (368)
Q Consensus 238 ~vl~NLl~NAi~~~~~~~~~--------~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f-~~~~~~~~~ 308 (368)
.+|..||+||+.|....... .......|.|.+.. +.-.|+|.|||+||+++++...|... ++.......
T Consensus 29 ifLRELIsNA~DA~~k~r~~~ltd~~~~~~~~~~~I~I~~d~--~~~~I~I~DnGiGMt~edl~~~l~tIA~Sgt~~f~~ 106 (677)
T 2cg9_A 29 IFLRELISNASDALDKIRYKSLSDPKQLETEPDLFIRITPKP--EQKVLEIRDSGIGMTKAELINNLGTIAKSGTKAFME 106 (677)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSSCTTTTTTCCCCCEEEEEEG--GGTEEEEEECSCCCCHHHHHGGGSSSSSCTTHHHHS
T ss_pred HHHHHHhhCHHHHHHHHHHHhccChhhccCCCCcEEEEEEeC--CCCEEEEEECCCCCCHHHHHHHHHhHhccccHHHHH
Confidence 57899999999998642100 00112346665543 33579999999999999876655432 221100000
Q ss_pred cccccccCCCCCCccccCHHHHHHHHH------------------HhCCeEEEEe-----cCCCeeEEEEEEec
Q 017683 309 ENTDLAADKGTMAGYGYGLPISRLYAR------------------YFGGDLQIIS-----MEGYGELNMFSVLL 359 (368)
Q Consensus 309 ~~~~~~~~~~~~~g~GlGL~i~k~i~~------------------~~gG~i~v~s-----~~g~Gt~f~i~lP~ 359 (368)
.... +......+..|+|++-+...++ .-||...+.. ..+.||++++.|.-
T Consensus 107 kl~~-~~d~~~IGqFGvGFySaf~vadkV~V~Sk~~~~~~~~W~s~g~~~~ti~~~~~~~~~~~GT~I~L~Lk~ 179 (677)
T 2cg9_A 107 ALSA-GADVSMIGQFGVGFYSLFLVADRVQVISKSNDDEQYIWESNAGGSFTVTLDEVNERIGRGTILRLFLKD 179 (677)
T ss_dssp CCCS-SCCCCCCCCTTCTTGGGGGTEEEEEEEEECTTSCEEEEEECSSSEEEEEECCSSCCCSSEEEEEEEECT
T ss_pred hhhc-ccchhhcCCCCchhHHHhhcCcEEEEEEccCCCceEEEEEcCCceEEEeecCCCCCCCCCeEEEEEEcc
Confidence 0000 0012234567888876543321 0134556654 24679999998764
No 49
>2o1u_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, AMP-PNP, GP96; HET: ANP; 2.40A {Canis lupus familiaris} PDB: 2o1v_A* 2o1w_A 2o1t_A
Probab=97.46 E-value=3e-05 Score=76.67 Aligned_cols=126 Identities=17% Similarity=0.213 Sum_probs=63.5
Q ss_pred eeecchhHHHHHHHHHHHHHHHHHHhhcC----C----CCCCCCEEEEEEeCCCceEEEEeecCCCCCCCCcccccccc-
Q 017683 229 FPYVPSHLHLMVFELVKNSLRAVEERYMD----S----DKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYL- 299 (368)
Q Consensus 229 ~~~d~~~l~~vl~NLl~NAi~~~~~~~~~----~----~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f- 299 (368)
++.++. .+|.+||+||+.|....... . ......|.|.+..+ .-.|+|.|||+||+++++..-|...
T Consensus 42 LYsn~e---ifLRELIsNA~DA~dk~r~~~l~~~~~~~~a~~~~I~I~~d~~--~~~I~I~DnGiGMt~edl~~~l~tIA 116 (666)
T 2o1u_A 42 LYKNKE---IFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCDKE--KNLLHVTDTGVGMTREELVKNLGTIA 116 (666)
T ss_dssp TSSSCT---THHHHHHHHHHHHHHHHHHHTTSCTTSSSSCCCCCEEEEEETT--TTEEEEEECSCCCCHHHHHHHTTC--
T ss_pred ccCCch---HHHHHHHhhHHHHHHHHHHHhccCchhccCCCccEEEEEEeCC--CCEEEEEECCCCCCHHHHHHHHhhhc
Confidence 445554 57899999999998542110 0 01123566655433 3579999999999999876655442
Q ss_pred cccCCCCCCccccc---c-cCCCCCCccccCHHHHHHHH-----------------HHhCCeEEEEec-----CCCeeEE
Q 017683 300 YSTARNPLDENTDL---A-ADKGTMAGYGYGLPISRLYA-----------------RYFGGDLQIISM-----EGYGELN 353 (368)
Q Consensus 300 ~~~~~~~~~~~~~~---~-~~~~~~~g~GlGL~i~k~i~-----------------~~~gG~i~v~s~-----~g~Gt~f 353 (368)
.+.+.......... + ......+..|+|.+-+..++ +.-||.+++... .+.||++
T Consensus 117 ~SGtk~f~~kl~~~~~~~~~d~~~IGqFGvGfySaf~vAdkV~V~Sr~~~~~~~~W~s~gg~~ti~~~~~~~~~~~GT~I 196 (666)
T 2o1u_A 117 KSGTSEFLNKMTEAQEDGQSTSELIGQFGVGFYSAFLVADKVIVTSKHNNDTQHIWESDSNEFSVIADPRGNTLGRGTTI 196 (666)
T ss_dssp -----------------------------CTTGGGGGTEEEEEEEEECTTSCCEEEEESSSCCEEEECTTCCSSSSEEEE
T ss_pred ccccHHHHHHhhhcccccccchhhccCCCcHHHhHHHhcCEEEEEEeeCCCceEEEEEeCCeEEEEecccCCCCCCCeEE
Confidence 11111000000000 0 01122345677876554333 112356666543 3679999
Q ss_pred EEEEec
Q 017683 354 MFSVLL 359 (368)
Q Consensus 354 ~i~lP~ 359 (368)
++.|.-
T Consensus 197 ~L~Lk~ 202 (666)
T 2o1u_A 197 TLVLKE 202 (666)
T ss_dssp EEEECT
T ss_pred EEEEcc
Confidence 998854
No 50
>2ioq_A Chaperone protein HTPG; heat shock protein, HSP90; 3.50A {Escherichia coli} PDB: 2iop_A
Probab=97.38 E-value=3.9e-05 Score=75.53 Aligned_cols=121 Identities=17% Similarity=0.237 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHHHHHHhhc----C----CCCCCCCEEEEEEeCCCceEEEEeecCCCCCCCCcccccccccccC-CCCC
Q 017683 237 HLMVFELVKNSLRAVEERYM----D----SDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTA-RNPL 307 (368)
Q Consensus 237 ~~vl~NLl~NAi~~~~~~~~----~----~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~-~~~~ 307 (368)
..+|.+||+||++|...... . .......|.|.+..+ .-.|+|.|||+||+++++...|....+.. ....
T Consensus 29 ~ifLrELIsNA~DA~~k~r~~~l~~~~~~~~a~~~~I~I~~d~~--~~~I~I~DnGiGMt~edl~~~l~tiA~Sg~~~f~ 106 (624)
T 2ioq_A 29 EIFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDKD--KRTLTISDNGVGMTRDEVIDHLGTIAKSGTKSFL 106 (624)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHTSTTTTTTCCCCCEEEEEETT--TTEEEEEECSCCCCHHHHHHHHHHHCC-------
T ss_pred HHHHHHHHHHHHHhhhhhHHhhccCcccccCCCCcEEEEEEeCC--CcEEEEEECCCCCCHHHHHHHHHhhcccccHHHH
Confidence 36789999999999843110 0 001124566665433 35799999999999998776554432211 1000
Q ss_pred Cccccc-ccCCCCCCccccCHHHHHHHHH-------Hh--------------CCeEEEEe--cCCCeeEEEEEEec
Q 017683 308 DENTDL-AADKGTMAGYGYGLPISRLYAR-------YF--------------GGDLQIIS--MEGYGELNMFSVLL 359 (368)
Q Consensus 308 ~~~~~~-~~~~~~~~g~GlGL~i~k~i~~-------~~--------------gG~i~v~s--~~g~Gt~f~i~lP~ 359 (368)
+...+. +......+..|+|++-+..+++ .. ||...+.. ..+.||++++.|.-
T Consensus 107 ~~l~~~~~~~~~~iG~fGvGfyS~f~VadkV~V~Sr~~~~~~~~~~~w~s~g~~~~~i~~~~~~~~GT~I~L~Lk~ 182 (624)
T 2ioq_A 107 ESLGSDQAKDSQLIGQFGVGFYSAFIVADKVTVRTRAAGEKPENGVFWESAGEGEYTVADITKEDRGTEITLHLRE 182 (624)
T ss_dssp --------CCTTHHHHHHHHHHHHHHHEEEEEEEEECTTSCGGGEEEEEECSSSCCEEEEECCSSSEEEEEEEECT
T ss_pred HHhcccccccccccCCCCccHHHHHhcCCeEEEEECCCCCCCCeeEEEEEeCCCeEEEEECCCCCCCeEEEEEEcc
Confidence 000000 0011223456899887777652 11 22334432 34679999998753
No 51
>4emv_A DNA topoisomerase IV, B subunit; protein-inhibitor complex, ATP binding, structure-based drug antimicrobial, virtual screen; HET: DNA 0R9; 1.70A {Streptococcus pneumoniae GA47373} PDB: 4em7_A*
Probab=97.36 E-value=0.00022 Score=61.23 Aligned_cols=87 Identities=22% Similarity=0.339 Sum_probs=54.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEEEEeCCCceEEEEeecCCCCCCCC-------cccccccccccCCC
Q 017683 233 PSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSG-------LPKIFTYLYSTARN 305 (368)
Q Consensus 233 ~~~l~~vl~NLl~NAi~~~~~~~~~~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~-------~~~if~~f~~~~~~ 305 (368)
+.-|.+++..++.||++.....+ ...|.|.+..++ .|+|.|||.|||.+. .+-+|.....+..-
T Consensus 38 ~~gl~~~v~Eiv~NaiD~~~~g~------~~~I~V~i~~~g---~i~V~DnG~GIp~~~h~~~~~~~e~v~t~lhag~Kf 108 (226)
T 4emv_A 38 GAGLHHLVWEIVDNAVDEALSGF------GDRIDVTINKDG---SLTVQDHGRGMPTGMHAMGIPTVEVIFTILHAGGKF 108 (226)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTC------CSEEEEEECTTS---CEEEEECSSCCCCSBCGGGCBHHHHHHHCBC-----
T ss_pred cccHHHHHHHHHHHHHHHHhcCC------CcEEEEEEeCCC---eEEEEEcCCCccccccccCceehheeEEeecccCcc
Confidence 34589999999999999876522 467888886543 699999999999997 44456433322111
Q ss_pred CCCcccccccCCCCCCccccCHHHHHHHH
Q 017683 306 PLDENTDLAADKGTMAGYGYGLPISRLYA 334 (368)
Q Consensus 306 ~~~~~~~~~~~~~~~~g~GlGL~i~k~i~ 334 (368)
+.+......+=.|.|++.+..+.
T Consensus 109 ------d~~~yk~SgGlhGvG~svvNALS 131 (226)
T 4emv_A 109 ------GQGGYKTSGGLHGVGSSVVNALS 131 (226)
T ss_dssp ---------------CGGGCCHHHHHHTE
T ss_pred ------CccceEeccccccccchhhhhcc
Confidence 00000111234789999888765
No 52
>3ied_A Heat shock protein; HSP90, chaperone, structural genomics, structura genomics consortium, SGC, stress response; HET: AN2; 2.01A {Plasmodium falciparum}
Probab=97.34 E-value=3.6e-05 Score=66.56 Aligned_cols=69 Identities=23% Similarity=0.311 Sum_probs=37.0
Q ss_pred EEEEEEeCCCceEEEEeecCCCCCCCCcccccccc-cccCCCCCCcccccc-cCCCCCCccccCHHHHHHHH
Q 017683 265 IRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYL-YSTARNPLDENTDLA-ADKGTMAGYGYGLPISRLYA 334 (368)
Q Consensus 265 I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f-~~~~~~~~~~~~~~~-~~~~~~~g~GlGL~i~k~i~ 334 (368)
+.|.+..+.+.-.|.|.|||+||+++++...+... ++......+. ...+ ......+..|+|++-|..++
T Consensus 119 l~I~I~~Dk~~~tLtI~DNGiGMTkeeL~~~LgtIA~SGtk~Fle~-l~~~~~d~~~IGqFGVGFySaFmVA 189 (272)
T 3ied_A 119 LIIKIKPDKEKKTLTITDNGIGMDKSELINNLGTIAQSGTAKFLKQ-IEEGKADSNLIGQFGVGFYSSFLVS 189 (272)
T ss_dssp CCEEEEEETTTTEEEEEECSCCCCHHHHHHHTTCSCCHHHHHHHHH-HHTTSSCTTCGGGSCCGGGGGGGTE
T ss_pred cEEEEEEeCCCCEEEEEeCCCCCCHHHHHHHHHHHhhcchhhHHHH-hhcccccccccCcccceeheeeccC
Confidence 44444444445579999999999999887655321 1110000000 0000 01233567899988776553
No 53
>3cwv_A DNA gyrase, B subunit, truncated; structural genomics, unknown function, B-subunit binding, isomerase, nucleotide-binding, topoisomerase; HET: DNA; 1.95A {Myxococcus xanthus}
Probab=97.32 E-value=0.00014 Score=67.43 Aligned_cols=52 Identities=12% Similarity=0.125 Sum_probs=41.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEEEEeCCCceEEEEeecCCCCCCCCccccc
Q 017683 233 PSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIF 296 (368)
Q Consensus 233 ~~~l~~vl~NLl~NAi~~~~~~~~~~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if 296 (368)
+.-+..++.+|++||+++....+ ...|.|.+..++ .|+|.|||.|||. +-+|
T Consensus 28 ~~gl~~~v~ElvdNsiDe~~~g~------a~~I~V~i~~~g---~I~V~DnGrGIp~---e~v~ 79 (369)
T 3cwv_A 28 EYGLHHLVYFLLDVAYEEARRGE------CRDVVLEVGGDG---SIALFCTSRTVTA---ENLV 79 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTC------CSEEEEEECTTS---CEEEEEEESSCCH---HHHH
T ss_pred CchHHHHHHHHHhhhHhHHhhCC------CCEEEEEEeCCC---EEEEEECCCCcCH---hHee
Confidence 45699999999999999875522 467888887654 7999999999998 5566
No 54
>1zxm_A TOPO IIA ATPase, DNA topoisomerase II, alpha isozyme; GHKL nucleotide-binding fold; HET: DNA ANP; 1.87A {Homo sapiens} PDB: 1zxn_A*
Probab=97.28 E-value=0.00048 Score=64.33 Aligned_cols=86 Identities=22% Similarity=0.296 Sum_probs=56.6
Q ss_pred hhHHHHHHHHHHHHHHHHHH-hhcCCCCCCCCEEEEEEeCCCceEEEEeecCCCCCCCCc--------ccccccccccCC
Q 017683 234 SHLHLMVFELVKNSLRAVEE-RYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGL--------PKIFTYLYSTAR 304 (368)
Q Consensus 234 ~~l~~vl~NLl~NAi~~~~~-~~~~~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~--------~~if~~f~~~~~ 304 (368)
.-|.+++.+|+.||++.... .+ ...|.|.+..+++ .|+|.|||.|||.+.. +-+|.....+..
T Consensus 51 ~GL~~lv~EivdNsiDe~~~~g~------~~~I~V~i~~~~~--~I~V~DnGrGIPv~~h~~~~~~~~e~v~t~lhagsK 122 (400)
T 1zxm_A 51 PGLYKIFDEILVNAADNKQRDPK------MSCIRVTIDPENN--LISIWNNGKGIPVVEHKVEKMYVPALIFGQLLTSSN 122 (400)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTT------CCEEEEEEETTTT--EEEEEEESSCCCCSEETTTTEEHHHHHHHSSSEESC
T ss_pred chHHHHHHHHHhhHHhHHhhcCC------CceEEEEEECCCC--EEEEEECCCcccCccccccCccchhheeeeecccCC
Confidence 46999999999999998732 22 5789999987543 7999999999999863 334543222211
Q ss_pred CCCCcccccccCCCCCCccccCHHHHHHH
Q 017683 305 NPLDENTDLAADKGTMAGYGYGLPISRLY 333 (368)
Q Consensus 305 ~~~~~~~~~~~~~~~~~g~GlGL~i~k~i 333 (368)
- +.+...-..+=.|.|++.+..+
T Consensus 123 f------~~~~ykvSgGlhGvGlsvVnAl 145 (400)
T 1zxm_A 123 Y------DDDEKKVTGGRNGYGAKLCNIF 145 (400)
T ss_dssp C------CGGGCCCCSCCSSCHHHHHHHT
T ss_pred C------CCCcccccCCccccceeeeEEe
Confidence 1 0000011233478999998877
No 55
>3fv5_A DNA topoisomerase 4 subunit B; topoisomerase IV B subunit complex, antibiotic resistance, ATP-binding, nucleotide-binding; HET: DNA 1EU; 1.80A {Escherichia coli} PDB: 1s14_A*
Probab=97.27 E-value=0.00028 Score=59.61 Aligned_cols=48 Identities=23% Similarity=0.371 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEEEEeCCCceEEEEeecCCCCCCCCcc
Q 017683 237 HLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLP 293 (368)
Q Consensus 237 ~~vl~NLl~NAi~~~~~~~~~~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~ 293 (368)
..++.+|+.||+++....+ ...|.|.+..++ .|+|.|||.|||.+..+
T Consensus 19 ~~~v~Elv~NsiDa~~~g~------a~~I~V~i~~~g---~i~V~DnG~GIp~~~~~ 66 (201)
T 3fv5_A 19 NHLGQEVIDNSVDEALAGH------AKRVDVILHADQ---SLEVIDDGRGMPVDIHP 66 (201)
T ss_dssp HHHHHHHHHHHHHHHHTTC------CSEEEEEECTTS---CEEEEECSSCCCCSBCT
T ss_pred hhhhHHHHHHHHHHHhcCC------CcEEEEEEeCCC---EEEEEECCCCcCccccc
Confidence 7899999999999876421 367888886433 79999999999998743
No 56
>3ttz_A DNA gyrase subunit B; protein-inhibitor complex, ATP-binding, structure-based drug antimicrobial, isomerase-isomerase inhibitor complex; HET: DNA 07N; 1.63A {Staphylococcus aureus} PDB: 3u2d_A* 3u2k_A* 3g75_A* 3g7b_A*
Probab=97.16 E-value=0.00058 Score=57.43 Aligned_cols=50 Identities=36% Similarity=0.556 Sum_probs=40.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEEEEeCCCceEEEEeecCCCCCCCC
Q 017683 233 PSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSG 291 (368)
Q Consensus 233 ~~~l~~vl~NLl~NAi~~~~~~~~~~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~ 291 (368)
+.-+..++..++.||++.....+ ...|.|.+..++ .|+|.|||.|||.+.
T Consensus 29 ~~gl~~~v~Elv~NsiD~~~ag~------~~~I~V~i~~~g---~i~V~DnG~Gip~~~ 78 (198)
T 3ttz_A 29 ERGLHHLVWEIVDNSIDEALAGY------ANQIEVVIEKDN---WIKVTDNGRGIPVDI 78 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTS------CCEEEEEEEGGG---EEEEEECSSCCCCSB
T ss_pred CcchHHHHHHHHHHHHhHHhcCC------CcEEEEEEeCCC---eEEEEECCCCccccc
Confidence 45689999999999999765422 478999987653 799999999999973
No 57
>1pvg_A DNA topoisomerase II; GHKL ATPase domain; HET: DNA ANP; 1.80A {Saccharomyces cerevisiae} SCOP: d.14.1.3 d.122.1.2 PDB: 1qzr_A*
Probab=97.05 E-value=0.0015 Score=61.29 Aligned_cols=86 Identities=24% Similarity=0.312 Sum_probs=56.8
Q ss_pred hHHHHHHHHHHHHHHHHHH-hhcCCCCCCCCEEEEEEeCCCceEEEEeecCCCCCCCCccc--------ccccccccCCC
Q 017683 235 HLHLMVFELVKNSLRAVEE-RYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPK--------IFTYLYSTARN 305 (368)
Q Consensus 235 ~l~~vl~NLl~NAi~~~~~-~~~~~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~--------if~~f~~~~~~ 305 (368)
-|.+++.+++.||++.... .+ ...|.|.+..+++ .|+|.|||.|||.+..+. +|........-
T Consensus 64 GL~~lv~EivdNaiDe~~~~g~------~~~I~V~i~~d~~--sI~V~DnGrGIPv~~h~~~g~~~~E~v~t~LhaGgKf 135 (418)
T 1pvg_A 64 GLFKIFDEILVNAADNKVRDPS------MKRIDVNIHAEEH--TIEVKNDGKGIPIEIHNKENIYIPEMIFGHLLTSSNY 135 (418)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTT------CCEEEEEEETTTT--EEEEEEESSCCCCSBCTTTCSBHHHHHHHSSSEESCC
T ss_pred hHHHHHHHHHhCHHHHHHhcCC------CCEEEEEEECCCC--EEEEEECCCcccCcccccCCcccceEEEEEEeccccc
Confidence 5899999999999998733 22 5789999987653 689999999999886443 44433322111
Q ss_pred CCCcccccccCCCCCCccccCHHHHHHHH
Q 017683 306 PLDENTDLAADKGTMAGYGYGLPISRLYA 334 (368)
Q Consensus 306 ~~~~~~~~~~~~~~~~g~GlGL~i~k~i~ 334 (368)
+.+......+-.|.|.++|..+-
T Consensus 136 ------d~~~ykvSGGLhGVG~SvVNALS 158 (418)
T 1pvg_A 136 ------DDDEKKVTGGRNGYGAKLCNIFS 158 (418)
T ss_dssp ------CTTSCCCCSCCSSCHHHHHHHTE
T ss_pred ------CCCceeccCCccceeeeeeeecc
Confidence 00001112234799999988765
No 58
>3lnu_A Topoisomerase IV subunit B; PARE, ATP-binding, nucleotide-BI topoisomerase; 2.20A {Xanthomonas oryzae PV} PDB: 3lps_A*
Probab=96.93 E-value=0.00077 Score=62.85 Aligned_cols=48 Identities=25% Similarity=0.356 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEEEEeCCCceEEEEeecCCCCCCCCcc
Q 017683 237 HLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLP 293 (368)
Q Consensus 237 ~~vl~NLl~NAi~~~~~~~~~~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~ 293 (368)
..++.++++||++.....+ ...|.|.+..++ .|+|.|||.|||.+..+
T Consensus 52 ~hlv~EivdNsiDea~ag~------~~~I~V~i~~dg---sI~V~DnGrGIPv~~h~ 99 (408)
T 3lnu_A 52 NHLAQEVIDNSVDEALAGH------AKQIEVTLYKDG---SCEVSDDGRGMPVDIHP 99 (408)
T ss_dssp HHHHHHHHHHHHHHHHTTS------CCEEEEEECTTS---CEEEEECSSCCCCSBCT
T ss_pred chhhHHHHHHHHHHhhcCC------CceEEEEEeCCC---eEEEEEcCCCCCccccc
Confidence 7889999999998876532 578999886543 69999999999998743
No 59
>3zcc_A HAMP, osmolarity sensor protein ENVZ; signaling protein, signal transduction, membrane protein, signalling, chimera; 1.25A {Archaeoglobus fulgidus} PDB: 3zrw_A 3zrv_A 3zrx_A 3zrw_B 2lfr_A 2lfs_A 1joy_A 2l7h_A 2l7i_A 2y20_A 2y21_A 2y0q_A 2y0t_A
Probab=94.79 E-value=0.32 Score=35.64 Aligned_cols=79 Identities=9% Similarity=0.063 Sum_probs=56.8
Q ss_pred ChhHHHHHHHHHHHHHHhhcCCCCCCchhHHHHHHHHHHHHHhccCcHHHHHHHHHHHhhccCcccccCChHHHHHHHHH
Q 017683 78 KPAVLKVRDWYLDSFRDLRSFPDIRSTSDERDFTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDR 157 (368)
Q Consensus 78 ~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~l~~~~~el~~~l~~~~~~~~~~~~~~~l~~ 157 (368)
..++..+...+....+.+... .+...+++..+.|++++|++.+.+.++.+... ....++.
T Consensus 36 ~dEi~~l~~~~n~m~~~l~~~--------~~~~~~~~~~~shel~tpl~~i~~~~e~l~~~------------~~~~~~~ 95 (114)
T 3zcc_A 36 ADEIGILAKSIERLRRSLKQL--------ADDGTLLMAGVSHDLRTPLTRIRLATEMMSEQ------------DGYLAES 95 (114)
T ss_dssp SSHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHTSCGG------------GHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHhhHHHcChHHHHHHHHHHHHHh------------hhHHHHH
Confidence 568888888887777776542 23456689999999999999998877766421 2333466
Q ss_pred HHHhhHHHHHhHHHHhhhc
Q 017683 158 FYMSRIGIRMLIGQHVELH 176 (368)
Q Consensus 158 ~~~~~~~~~~li~~ll~l~ 176 (368)
+..+...+..++++++++.
T Consensus 96 i~~~~~~l~~~i~~ll~~~ 114 (114)
T 3zcc_A 96 INKDIEECNAIIEQFIDYL 114 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHhhC
Confidence 6667777888899988763
No 60
>4gfh_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, DNA supercoiling, DNA replication; HET: DNA PTR TSP ANP; 4.41A {Saccharomyces cerevisiae}
Probab=94.57 E-value=0.087 Score=55.75 Aligned_cols=88 Identities=24% Similarity=0.297 Sum_probs=54.0
Q ss_pred hHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEEEEeCCCceEEEEeecCCCCCCCCccc--------ccccccccCCCC
Q 017683 235 HLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPK--------IFTYLYSTARNP 306 (368)
Q Consensus 235 ~l~~vl~NLl~NAi~~~~~~~~~~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~--------if~~f~~~~~~~ 306 (368)
-|.+++.++|.||++..-..+. ...|.|.+..+++ .|+|.|||.|||-+.-++ +|....+...-
T Consensus 59 GL~hl~~EildNsiDea~ag~~-----~~~I~V~i~~~d~--sisV~DnGRGIPvd~h~~~~~~~~Evv~t~LhAGgKF- 130 (1177)
T 4gfh_A 59 GLFKIFDEILVNAADNKVRDPS-----MKRIDVNIHAEEH--TIEVKNDGKGIPIEIHNKENIYIPEMIFGHLLTSSNY- 130 (1177)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTT-----CCEEEEEEETTTT--EEEEEECSSCCCCSBCTTTCSBHHHHHHHSSSEESCC-
T ss_pred eeeeEeeEEEEChHhHHhhCCC-----CCeEEEEEECCCC--EEEEEecCCcccccccCCCCCEeeeeeccccccccCc-
Confidence 5899999999999996654220 2458898875444 589999999999764322 23322221110
Q ss_pred CCcccccccCCCCCCccccCHHHHHHHHH
Q 017683 307 LDENTDLAADKGTMAGYGYGLPISRLYAR 335 (368)
Q Consensus 307 ~~~~~~~~~~~~~~~g~GlGL~i~k~i~~ 335 (368)
+.+......+-.|.|.++|..+-+
T Consensus 131 -----d~~~ykvSGGLHGVG~svVNALS~ 154 (1177)
T 4gfh_A 131 -----DDDEKKVTGGRNGYGAKLCNIFST 154 (1177)
T ss_dssp -----CCSSCCCCSCCSSCHHHHHHHTEE
T ss_pred -----CCCCCeEeccCCChhhhHHhhcCC
Confidence 000111223347999998877653
No 61
>3zrx_A AF1503 protein, osmolarity sensor protein ENVZ; signaling protein, osmoregulation, OMPR, OMPC; 1.25A {Archaeoglobus fulgidus} PDB: 3zrv_A 3zrw_A 3zrw_B 2lfs_A 2lfr_A 1joy_A 2l7i_A 2y20_A 2l7h_A 2y21_A 2y0t_A 2y0q_A
Probab=90.50 E-value=3 Score=29.99 Aligned_cols=81 Identities=9% Similarity=0.073 Sum_probs=56.4
Q ss_pred CChhHHHHHHHHHHHHHHhhcCCCCCCchhHHHHHHHHHHHHHhccCcHHHHHHHHHHHhhccCcccccCChHHHHHHHH
Q 017683 77 EKPAVLKVRDWYLDSFRDLRSFPDIRSTSDERDFTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLD 156 (368)
Q Consensus 77 ~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~l~~~~~el~~~l~~~~~~~~~~~~~~~l~ 156 (368)
...++..+...+....+.+... .....+++....|++++|+..+...++.+... .....+
T Consensus 35 ~~dEi~~l~~~~n~m~~~l~~~--------~~~~~~~~~~~shel~~~l~~i~~~~~~l~~~------------~~~~~~ 94 (115)
T 3zrx_A 35 RADEIGILAKSIERLRRSLKQL--------ADDRTLLMAGVSHDLRTPLTRIRLATEMMSEQ------------DGYLAE 94 (115)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHTSCGG------------GHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh------------hHHHHH
Confidence 4568888888887777666542 12345678899999999999998888765422 134455
Q ss_pred HHHHhhHHHHHhHHHHhhhcC
Q 017683 157 RFYMSRIGIRMLIGQHVELHN 177 (368)
Q Consensus 157 ~~~~~~~~~~~li~~ll~l~~ 177 (368)
.+......+..++++++++++
T Consensus 95 ~~~~~~~~~~~~~~~l~~~~~ 115 (115)
T 3zrx_A 95 SINKDIEECNAIIEQFIDYLR 115 (115)
T ss_dssp HHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHhC
Confidence 555666777788888887764
No 62
>3lmm_A Uncharacterized protein; multi-domained alpha-beta protein, structural genomics, PSI- 2, protein structure initiative; 3.00A {Corynebacterium diphtheriae}
Probab=72.28 E-value=7.2 Score=38.09 Aligned_cols=105 Identities=18% Similarity=0.156 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEEEEeCCCceEEEEeecCC---CCCCCCcccccccccccCCCCCCccccc
Q 017683 237 HLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGG---GIPRSGLPKIFTYLYSTARNPLDENTDL 313 (368)
Q Consensus 237 ~~vl~NLl~NAi~~~~~~~~~~~~~~~~I~i~~~~~~~~~~i~V~D~G~---Gi~~~~~~~if~~f~~~~~~~~~~~~~~ 313 (368)
..++.+.|.||+-|..-. ..++|.|.+..-++ .|.|.+-|. |++.+. +...- +.. . +..
T Consensus 298 ~~aiREal~NAl~HrDY~------~~~~i~i~i~~~~d--riei~npG~l~~~~t~e~---~~~~~-s~R-N-----p~l 359 (583)
T 3lmm_A 298 RLAVREAMLNAMIHRDWN------RSEPIDVRWIELDS--TLIVRSPGGFPAAITSEN---VLSNR-AAR-Y-----PAL 359 (583)
T ss_dssp HHHHHHHHHHHHHHSCSS------SSSCEEEEEETTTT--EEEEEEESCCCTTCCTTS---STTCC-CCS-C-----HHH
T ss_pred HHHHHHHHHHHHhccccC------CCCCEEEEEEecCC--EEEEEcCCCCCCCCCHHH---hcCCC-CCC-C-----HHH
Confidence 578899999999886431 14789998872222 588888885 454443 33211 111 0 000
Q ss_pred c---cCCCCCCccccCHHHHHHHHHHhCCe-EEEEecCCCeeEEEEEEeccc
Q 017683 314 A---ADKGTMAGYGYGLPISRLYARYFGGD-LQIISMEGYGELNMFSVLLYS 361 (368)
Q Consensus 314 ~---~~~~~~~g~GlGL~i~k~i~~~~gG~-i~v~s~~g~Gt~f~i~lP~~~ 361 (368)
. -..+-..+.|-|+.-+...++.+|.. -.+....+ ..|++.||...
T Consensus 360 a~~~~~~~~~e~~GsGi~~i~~~~~~~g~~~P~~~~~~~--~~~~v~l~~~~ 409 (583)
T 3lmm_A 360 ADLYRALGLVDKQGVGVDRMYQAMIALGHRPPTIEEIAG--PFVETTLVGGR 409 (583)
T ss_dssp HHHHHHTTCSCSSHHHHHHHHHHHHHTTCCCCEEEEETT--TEEEEEEECCS
T ss_pred HHHHHHhCccccCCcHHHHHHHHHHHcCCCCCeEEEcCC--CEEEEEEeCCC
Confidence 0 00112356777888888888888863 34444333 56777777643
No 63
>3zcc_A HAMP, osmolarity sensor protein ENVZ; signaling protein, signal transduction, membrane protein, signalling, chimera; 1.25A {Archaeoglobus fulgidus} PDB: 3zrw_A 3zrv_A 3zrx_A 3zrw_B 2lfr_A 2lfs_A 1joy_A 2l7h_A 2l7i_A 2y20_A 2y21_A 2y0q_A 2y0t_A
Probab=30.06 E-value=58 Score=22.69 Aligned_cols=32 Identities=13% Similarity=0.193 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHhhccC
Q 017683 109 DFTQMIKAIKVRHNNVVPMMALGLQQLKKEMD 140 (368)
Q Consensus 109 ~~~~~l~~~~~~~~~~l~~l~~~~~el~~~l~ 140 (368)
.++.|...+.......-.++....|++++|++
T Consensus 45 ~~n~m~~~l~~~~~~~~~~~~~~shel~tpl~ 76 (114)
T 3zcc_A 45 SIERLRRSLKQLADDGTLLMAGVSHDLRTPLT 76 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHcChHH
Confidence 44555555554444444456666799999987
No 64
>4avr_A PA4485; unknown function, GRAM-negative bacteria, infectious disease structure-based inhibitor design; 1.08A {Pseudomonas aeruginosa PA01}
Probab=25.50 E-value=47 Score=23.70 Aligned_cols=27 Identities=19% Similarity=0.315 Sum_probs=21.1
Q ss_pred CCCEEEEEEeCCCceEEEEeecCCCCC
Q 017683 262 APPIRIIVADGLEDVTIKVSDEGGGIP 288 (368)
Q Consensus 262 ~~~I~i~~~~~~~~~~i~V~D~G~Gi~ 288 (368)
+..|.|+-...+..+.++|-|.||..+
T Consensus 39 gt~vrVtNl~nGksVvVrVnDRGP~~~ 65 (95)
T 4avr_A 39 GARVRVTNLDNRRSVVVRINDRGPFRR 65 (95)
T ss_dssp TCEEEEEETTTCCEEEEEEEECCCCST
T ss_pred CcEEEEEECCCCcEEEEEEccCCCCCC
Confidence 455777666788899999999998654
No 65
>1xhj_A Nitrogen fixation protein NIFU; alpha-beta, NIFU-like, structural genomics, protein structur initiative, NESG, PSI; NMR {Staphylococcus epidermidis} SCOP: d.52.8.1
Probab=23.47 E-value=1.1e+02 Score=21.45 Aligned_cols=27 Identities=22% Similarity=0.386 Sum_probs=20.1
Q ss_pred HHHHHHHHhCCeEEEEecCCCeeEEEEEE
Q 017683 329 ISRLYARYFGGDLQIISMEGYGELNMFSV 357 (368)
Q Consensus 329 i~k~i~~~~gG~i~v~s~~g~Gt~f~i~l 357 (368)
-+|-.++.+||++.+...++ | .+++.|
T Consensus 18 ~IRP~L~~dGGdvelv~v~~-g-~V~V~L 44 (88)
T 1xhj_A 18 RLRPFLLRDGGDCTLVDVED-G-IVKLQL 44 (88)
T ss_dssp HHHHHHHHHSCEEEEEECCS-S-EEEEEE
T ss_pred HhcHHHHhcCCeEEEEEEEC-C-EEEEEE
Confidence 36778899999999998864 4 455554
No 66
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=20.48 E-value=5.5e+02 Score=24.32 Aligned_cols=45 Identities=2% Similarity=-0.031 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHhhHHHHHhHHHHhhhcCCCCCCCcccccccCCCHHHHH
Q 017683 150 EIHQFLDRFYMSRIGIRMLIGQHVELHNPNPPPHCIGYIDTKMSPVQVA 198 (368)
Q Consensus 150 ~~~~~l~~~~~~~~~~~~li~~ll~l~~~~~~~~~~~~~~~~~~l~~li 198 (368)
.++..|+......+++..=|+.-++..+-..... ..-.+|+....
T Consensus 135 vLQsnLedq~~kIQRLEvDIdiqirsCKgsCsr~----~~~~vd~~sY~ 179 (562)
T 3ghg_A 135 LLQKNVRAQLVDMKRLEVDIDIKIRSCRGSCSRA----LAREVDLKDYE 179 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHGGGTBSCC----CCCCCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccccch----heeecchHHHH
Confidence 4444444444444444445666666666433221 12467876663
Done!