Your job contains 1 sequence.
>017686
MFYSQTFLARKGPLGTVWCAAHLQHRLKKSHYTSTNIPSTVDRIMCPDVPIALRMSGHLL
LGVVRIYSKKVDYLYHDCNVFLISLRKTFSTVSVNLPEDATHAPAHTVTLPQKFNLDSVD
LDDHTFDDEYDNHSRSQEDITLTDQIPVGRDVYVAITFDEDIMMDSTHPPEDVPDSGVRQ
MQDILRAPPSDADVGIQDPGPSNQTEVLNVTEDIQDPGASHQGELPTDSEGLQEPGPSNQ
TEVLGETVELQEPGPSNQTEVLRETVNFQEPDLSNQTEVLHRSTDHTSPPKFPEVEVMRD
THHDFSAGDLSPLFLDVAKDITEPIVSSHQFSNEKEIQTPALEDLLASRGQPLQLFVSCT
GHPVNSS
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 017686
(367 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2097548 - symbol:SYN3 "AT3G59550" species:3702... 628 2.1e-61 1
TAIR|locus:2181457 - symbol:SYN4 "sister chromatid cohesi... 409 4.8e-37 1
UNIPROTKB|O93310 - symbol:rad21 "Double-strand-break repa... 305 1.3e-28 2
FB|FBgn0260987 - symbol:vtd "verthandi" species:7227 "Dro... 296 5.7e-28 2
TAIR|locus:2164501 - symbol:SYN2 species:3702 "Arabidopsi... 320 1.0e-27 1
UNIPROTKB|F1PWJ5 - symbol:RAD21L1 "Uncharacterized protei... 298 1.2e-27 2
RGD|1594529 - symbol:Rad21 "RAD21 homolog (S. pombe)" spe... 304 3.0e-26 1
UNIPROTKB|E5RFV8 - symbol:RAD21 "Double-strand-break repa... 295 4.0e-26 1
UNIPROTKB|E5RIN7 - symbol:RAD21 "Double-strand-break repa... 295 4.0e-26 1
UNIPROTKB|D2HSB3 - symbol:RAD21L1 "Double-strand-break re... 299 6.8e-26 1
UNIPROTKB|E1C938 - symbol:RAD21L1 "Uncharacterized protei... 282 9.1e-26 2
UNIPROTKB|E1BTV6 - symbol:RAD21L1 "Uncharacterized protei... 282 1.0e-25 2
UNIPROTKB|Q3SWX9 - symbol:RAD21 "Double-strand-break repa... 299 1.0e-25 1
UNIPROTKB|E2QRU9 - symbol:RAD21 "Uncharacterized protein"... 299 1.0e-25 1
UNIPROTKB|F1S1K0 - symbol:LOC100738633 "Uncharacterized p... 299 1.0e-25 1
MGI|MGI:108016 - symbol:Rad21 "RAD21 homolog (S. pombe)" ... 299 1.0e-25 1
UNIPROTKB|F1S874 - symbol:RAD21L1 "Uncharacterized protei... 294 1.1e-25 1
UNIPROTKB|O60216 - symbol:RAD21 "Double-strand-break repa... 298 1.3e-25 1
ZFIN|ZDB-GENE-030131-994 - symbol:rad21a "RAD21 homolog (... 298 1.4e-25 1
UNIPROTKB|Q9H4I0 - symbol:RAD21L1 "Double-strand-break re... 296 1.5e-25 1
UNIPROTKB|E1B9J3 - symbol:RAD21L1 "Uncharacterized protei... 295 1.9e-25 1
ZFIN|ZDB-GENE-060503-223 - symbol:rad21b "RAD21 homolog (... 296 2.2e-25 1
ZFIN|ZDB-GENE-061103-505 - symbol:rad21l1 "RAD21-like 1 (... 294 2.3e-25 1
UNIPROTKB|F1NYD0 - symbol:RAD21 "Uncharacterized protein"... 295 2.8e-25 1
RGD|1587557 - symbol:Rad21l1 "RAD21-like 1 (S. pombe)" sp... 292 3.9e-25 1
MGI|MGI:3652039 - symbol:Rad21l "RAD21-like (S. pombe)" s... 287 1.4e-24 1
UNIPROTKB|E1BTU9 - symbol:RAD21L1 "Uncharacterized protei... 282 7.2e-24 1
UNIPROTKB|E5RJK5 - symbol:RAD21 "Double-strand-break repa... 272 1.1e-23 1
UNIPROTKB|E5RJW1 - symbol:RAD21 "Double-strand-break repa... 272 1.1e-23 1
ASPGD|ASPL0000069046 - symbol:AN7465 species:162425 "Emer... 242 1.3e-21 3
WB|WBGene00004737 - symbol:scc-1 species:6239 "Caenorhabd... 252 3.3e-19 1
UNIPROTKB|G4MR40 - symbol:MGG_09891 "Double-strand-break ... 244 3.3e-18 1
WB|WBGene00000591 - symbol:coh-1 species:6239 "Caenorhabd... 240 1.1e-17 1
POMBASE|SPCC338.17c - symbol:rad21 "mitotic cohesin compl... 229 2.1e-16 1
TAIR|locus:2169667 - symbol:SYN1 "SYNAPTIC 1" species:370... 215 9.2e-15 1
DICTYBASE|DDB_G0276977 - symbol:rad21 "cohesin subunit" s... 213 2.5e-14 1
CGD|CAL0000863 - symbol:MCD1 species:5476 "Candida albica... 134 2.5e-09 3
POMBASE|SPBC29A10.14 - symbol:rec8 "meiotic cohesin compl... 140 2.1e-06 1
ASPGD|ASPL0000077407 - symbol:AN11113 species:162425 "Eme... 125 0.00014 1
UNIPROTKB|F1PE29 - symbol:SHROOM3 "Uncharacterized protei... 127 0.00025 1
UNIPROTKB|G5EHS1 - symbol:MGCH7_ch7g423 "Uncharacterized ... 121 0.00037 1
SGD|S000002161 - symbol:MCD1 "Essential alpha-kleisin sub... 107 0.00096 2
>TAIR|locus:2097548 [details] [associations]
symbol:SYN3 "AT3G59550" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM;ISS] [GO:0000798 "nuclear cohesin complex"
evidence=ISS] [GO:0007067 "mitosis" evidence=IEP] [GO:0005730
"nucleolus" evidence=IDA] [GO:0009555 "pollen development"
evidence=IMP] [GO:0009561 "megagametogenesis" evidence=IMP]
[GO:0000280 "nuclear division" evidence=RCA] [GO:0000911
"cytokinesis by cell plate formation" evidence=RCA] [GO:0006261
"DNA-dependent DNA replication" evidence=RCA] [GO:0006275
"regulation of DNA replication" evidence=RCA] [GO:0010389
"regulation of G2/M transition of mitotic cell cycle" evidence=RCA]
[GO:0042023 "DNA endoreduplication" evidence=RCA] [GO:0051225
"spindle assembly" evidence=RCA] InterPro:IPR006909
InterPro:IPR006910 Pfam:PF04824 Pfam:PF04825 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0007059 GO:GO:0005730 GO:GO:0051301
GO:GO:0007067 GO:GO:0009555 GO:GO:0009561 EMBL:AL138659
eggNOG:NOG249424 KO:K06670 Gene3D:1.10.10.580 InterPro:IPR023093
GO:GO:0000798 EMBL:AF281155 EMBL:AF400128 IPI:IPI00518598
IPI:IPI00541511 IPI:IPI00548487 PIR:T49296 RefSeq:NP_191514.1
UniGene:At.1119 ProteinModelPortal:Q9FQ19 SMR:Q9FQ19 PaxDb:Q9FQ19
PRIDE:Q9FQ19 EnsemblPlants:AT3G59550.1 GeneID:825124
KEGG:ath:AT3G59550 TAIR:At3g59550 HOGENOM:HOG000090294
InParanoid:Q9FQ19 OMA:TVWCAAH PhylomeDB:Q9FQ19
ProtClustDB:CLSN2915554 Genevestigator:Q9FQ19 GermOnline:AT3G59550
Uniprot:Q9FQ19
Length = 693
Score = 628 (226.1 bits), Expect = 2.1e-61, P = 2.1e-61
Identities = 139/275 (50%), Positives = 170/275 (61%)
Query: 1 MFYSQTFLARKGPLGTVWCAAHLQHRLKKSHYTSTNIPSTVDRIMCPDVPIALRMSGHLL 60
MFYS T LARKGPLGTVWCAAH+ RLKKS YTS NIP TVD IM P+VP+ALR S HLL
Sbjct: 1 MFYSHTLLARKGPLGTVWCAAHVHQRLKKSQYTSINIPDTVDNIMFPEVPLALRTSSHLL 60
Query: 61 LGVVRIYSKKVDYLYHDCNVFLISLRKTFSTVSVNLPEDATHAPAHTVTLPQKFNLDSVD 120
+GVVRIYSKKVDYLY+D N+ + K F + VNLPEDA AP +VTLPQ NLD D
Sbjct: 61 VGVVRIYSKKVDYLYNDWNLLNTWVAKAFVSTQVNLPEDARQAPPESVTLPQALNLDEFD 120
Query: 121 LDDHTFDDEYDNHSRSQEDITLTDQIPVGRDVYVAITFDEDIMMDSTHPPEDVPDSGVRQ 180
L+D T D E+DNH+RS+EDITLTDQIP G D YVA+TFDEDI+ +S P DV S
Sbjct: 121 LEDDTLDMEFDNHTRSEEDITLTDQIPTGIDPYVAVTFDEDIISESI--PMDVDQS---- 174
Query: 181 MQDILRAPPSDADVGI-QDPGPSNQTEVLNVTEDIQDPGASHQGELPTDSEGLQEPGPSN 239
+ + R + DV + GP N+ N+ D G + + +Q+P SN
Sbjct: 175 TEPVSRHT-GEIDVETAHETGPDNEPRDSNIAFDT---GTYSPRNVTEEFTEVQDPRQSN 230
Query: 240 QTEVL---GETVELQEPGPSNQTEVLRETVNFQEP 271
TE E + PG + E +R+ + P
Sbjct: 231 LTEERIPNSERNDATSPGTVPEIERMRDAAHDLSP 265
Score = 148 (57.2 bits), Expect = 3.7e-07, P = 3.7e-07
Identities = 61/206 (29%), Positives = 91/206 (44%)
Query: 155 AITFDEDIMMDSTHPPEDVPDSGVRQMQDILRAP--PSDAD--VGIQ-DPGPSNQTEVLN 209
A+ DE + D T E D+ R +DI P+ D V + D +++ ++
Sbjct: 113 ALNLDEFDLEDDTLDMEF--DNHTRSEEDITLTDQIPTGIDPYVAVTFDEDIISESIPMD 170
Query: 210 VTEDIQDPGASHQGELPTDSEGLQEPGPSNQTEVLGETVELQEPGPSNQTEVLRETVNFQ 269
V + + P + H GE+ D E E GP N+ + P N TE E Q
Sbjct: 171 VDQSTE-PVSRHTGEI--DVETAHETGPDNEPRDSNIAFDTGTYSPRNVTEEFTEV---Q 224
Query: 270 EPDLSNQTEV-LHRS--TDHTSPPKFPEVEVMRDTHHDFSAGDLSPLFLDVAKDI-TEPI 325
+P SN TE + S D TSP PE+E MRD HD S P F +D+ E
Sbjct: 225 DPRQSNLTEERIPNSERNDATSPGTVPEIERMRDAAHDLSPTS-HPSFAAQQQDVRVERT 283
Query: 326 VSSHQFSNEKEIQTPALEDLLASRGQ 351
S + NEKE P++++ + + G+
Sbjct: 284 ESLDETLNEKEPTIPSIDEEMLNSGR 309
>TAIR|locus:2181457 [details] [associations]
symbol:SYN4 "sister chromatid cohesion 1 protein 4"
species:3702 "Arabidopsis thaliana" [GO:0000228 "nuclear
chromosome" evidence=IEA] [GO:0003674 "molecular_function"
evidence=ND] [GO:0005634 "nucleus" evidence=ISM] [GO:0007062
"sister chromatid cohesion" evidence=ISS;IMP] [GO:0006346
"methylation-dependent chromatin silencing" evidence=RCA]
[GO:0007067 "mitosis" evidence=RCA] [GO:0016246 "RNA interference"
evidence=RCA] InterPro:IPR006909 InterPro:IPR006910 Pfam:PF04824
Pfam:PF04825 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0000228
GO:GO:0007062 eggNOG:NOG249424 KO:K06670 Gene3D:1.10.10.580
InterPro:IPR023093 EMBL:AF400129 IPI:IPI00542370 RefSeq:NP_197131.2
UniGene:At.10001 UniGene:At.67257 ProteinModelPortal:Q8W1Y0
PaxDb:Q8W1Y0 PRIDE:Q8W1Y0 EnsemblPlants:AT5G16270.1 GeneID:831487
KEGG:ath:AT5G16270 TAIR:At5g16270 HOGENOM:HOG000090768
InParanoid:Q8W1Y0 OMA:EYNQDAS PhylomeDB:Q8W1Y0
ProtClustDB:CLSN2690166 Genevestigator:Q8W1Y0 Uniprot:Q8W1Y0
Length = 1031
Score = 409 (149.0 bits), Expect = 4.8e-37, P = 4.8e-37
Identities = 100/259 (38%), Positives = 148/259 (57%)
Query: 1 MFYSQTFLARKGPLGTVWCAAHLQHRLKKSHYTSTNIPSTVDRIMCPDVPIALRMSGHLL 60
MFYSQ LA+KGPLGT+W AAHL+ +L+K+ T+I +VD I+ P+ PIALR+S HLL
Sbjct: 1 MFYSQFILAKKGPLGTIWIAAHLERKLRKNQVADTDIGVSVDSILFPEAPIALRLSSHLL 60
Query: 61 LGVVRIYSKKVDYLYHDCNVFLISLRKTFSTVSVNLPEDATHAPAHTVTLPQKFNLDSVD 120
LGVVRIYS+KV+YL+ DC+ L+ +++ F + +V+LP + + AP H++TLP+ F+LD +
Sbjct: 61 LGVVRIYSRKVNYLFDDCSEALLKVKQAFRSAAVDLPPEESTAPYHSITLPETFDLDDFE 120
Query: 121 L-DDHTFDDEY-DNHSRSQEDITLTDQIPVGRDVYVAITFDEDIMM---DSTHPPEDVPD 175
L D+ F Y D+H ++E ITL D + G VY F D D++ D+ D
Sbjct: 121 LPDNEIFQGNYVDHHVSTKEQITLQDTMD-GV-VYSTSQFGLDERFGDGDTSQAALDL-D 177
Query: 176 SGVRQMQDILRAPPSDADVGIQDPGPSNQTEVLNVTEDIQDPGASHQGELPTDSEGLQEP 235
V Q +D++ SD D G+ PG + + I+D +P D Q
Sbjct: 178 EAVFQDKDVIG---SD-DEGV--PGIDHNAYLDAAAPGIKDSMEGVSEAMPMDFNEEQVE 231
Query: 236 GPSNQTEVLGETVELQEPG 254
+ E + + Q PG
Sbjct: 232 DLAMNNEFIEDAQAPQTPG 250
>UNIPROTKB|O93310 [details] [associations]
symbol:rad21 "Double-strand-break repair protein rad21
homolog" species:8355 "Xenopus laevis" [GO:0071168 "protein
localization to chromatin" evidence=ISS] InterPro:IPR006909
InterPro:IPR006910 Pfam:PF04824 Pfam:PF04825 GO:GO:0006915
GO:GO:0007059 GO:GO:0000775 GO:GO:0051301 GO:GO:0007067
GO:GO:0006281 GO:GO:0000228 GO:GO:0071168 CTD:5885
HOVERGEN:HBG059956 KO:K06670 Gene3D:1.10.10.580 InterPro:IPR023093
EMBL:AF051786 RefSeq:NP_001083807.1 UniGene:Xl.53864
ProteinModelPortal:O93310 IntAct:O93310 GeneID:399129
KEGG:xla:399129 Uniprot:O93310
Length = 629
Score = 305 (112.4 bits), Expect = 1.3e-28, Sum P(2) = 1.3e-28
Identities = 64/150 (42%), Positives = 93/150 (62%)
Query: 1 MFYSQTFLARKGPLGTVWCAAHLQHRLKKSHYTSTNIPSTVDRIMCPDVPIALRMSGHLL 60
MFY+ L+++GPL +W AAH +L K+H N+ S+V+ I+CP V +ALR SGHLL
Sbjct: 1 MFYAHFVLSKRGPLAKIWLAAHWDKKLTKAHVFECNLESSVESIICPKVKMALRTSGHLL 60
Query: 61 LGVVRIYSKKVDYLYHDCNVFLISLRKTFSTVSVNLPEDATHAPAHTVTLPQKFN-LDSV 119
LGVVRIY +K YL DCN I ++ F V+LPE+ A + +TLP++F+ D
Sbjct: 61 LGVVRIYHRKAKYLLADCNEAFIKIKMAFRPGVVDLPEENREAAYNAITLPEEFHDFDQP 120
Query: 120 --DLDDHTFDDEYD-NHSRSQEDITLTDQI 146
DLDD ++ N SR +E IT+ +++
Sbjct: 121 LPDLDDIDVAQQFSLNQSRVEE-ITMREEV 149
Score = 44 (20.5 bits), Expect = 1.3e-28, Sum P(2) = 1.3e-28
Identities = 17/94 (18%), Positives = 39/94 (41%)
Query: 159 DEDIMMDSTHPPEDVPDSGVRQMQDILRAPPSDADVGIQDPGPSNQTEVLNVTEDIQDPG 218
D+ I+ +++H E + + + D + PP G++ + E + + ++ +
Sbjct: 435 DQPILEEASHLQESLMEGSRTHLDDTIMPPPPPKQ-GVKRDSLQMEPEPMPMMQEAEPQI 493
Query: 219 ASHQGELPTDSEGLQEPGPSNQTEVLGETVELQE 252
LP E L P + ++++ E L E
Sbjct: 494 EMPPPPLPPPLE-LPPEEPQSISDLIPELNLLPE 526
>FB|FBgn0260987 [details] [associations]
symbol:vtd "verthandi" species:7227 "Drosophila melanogaster"
[GO:0006289 "nucleotide-excision repair" evidence=NAS] [GO:0008278
"cohesin complex" evidence=ISS;IDA;NAS;IPI] [GO:0007064 "mitotic
sister chromatid cohesion" evidence=ISS;IMP;NAS] [GO:0000775
"chromosome, centromeric region" evidence=NAS] [GO:0007067
"mitosis" evidence=IMP] [GO:0000228 "nuclear chromosome"
evidence=IEA] [GO:0005721 "centromeric heterochromatin"
evidence=IDA] [GO:0007052 "mitotic spindle organization"
evidence=IMP] [GO:0005705 "polytene chromosome interband"
evidence=IDA] [GO:0016322 "neuron remodeling" evidence=IMP]
[GO:0005634 "nucleus" evidence=IDA] [GO:0010628 "positive
regulation of gene expression" evidence=IGI] InterPro:IPR006909
InterPro:IPR006910 Pfam:PF04824 Pfam:PF04825 GO:GO:0005634
GO:GO:0007052 GO:GO:0016322 GO:GO:0010628 GO:GO:0005721
GO:GO:0000228 GO:GO:0007064 GO:GO:0008278 GO:GO:0005705
EMBL:CM000458 eggNOG:NOG249424 GeneTree:ENSGT00390000011606
KO:K06670 Gene3D:1.10.10.580 InterPro:IPR023093 EMBL:AF109926
EMBL:AF267746 EMBL:AF267745 EMBL:BT100037 RefSeq:NP_001015132.1
UniGene:Dm.3062 DIP:DIP-18950N MINT:MINT-1730906 STRING:O96689
EnsemblMetazoa:FBtr0113746 GeneID:3354896 KEGG:dme:Dmel_CG17436
UCSC:CG17436-RA CTD:3354896 FlyBase:FBgn0260987 InParanoid:O96689
OMA:KRLMHWK OrthoDB:EOG44J102 GenomeRNAi:3354896 NextBio:849550
Uniprot:O96689
Length = 715
Score = 296 (109.3 bits), Expect = 5.7e-28, Sum P(2) = 5.7e-28
Identities = 63/148 (42%), Positives = 90/148 (60%)
Query: 1 MFYSQTFLARKGPLGTVWCAAHLQHRLKKSHYTSTNIPSTVDRIMCPDVPIALRMSGHLL 60
MFY LA+KGPL +W AAH ++ K+H TNI +V+ I+ P V +ALR SGHLL
Sbjct: 1 MFYEHIILAKKGPLARIWLAAHWDKKITKAHVFETNIEKSVEGILQPKVKLALRTSGHLL 60
Query: 61 LGVVRIYSKKVDYLYHDCNVFLISLRKTFSTVSVNLPEDATHAPAHTVTLPQKFN-LDSV 119
LGVVRIYS+K YL DCN + ++ F V+LPE A + +TLP+ F+ D+
Sbjct: 61 LGVVRIYSRKAKYLLADCNEAFVKIKMAFRPGMVDLPEGHREANVNAITLPEVFHDFDTA 120
Query: 120 --DLDDHTFDDEYD-NHSRSQEDITLTD 144
+L+D + ++ N SR+ E IT+ +
Sbjct: 121 LPELNDIDIEAQFSINQSRADE-ITMRE 147
Score = 50 (22.7 bits), Expect = 5.7e-28, Sum P(2) = 5.7e-28
Identities = 20/71 (28%), Positives = 31/71 (43%)
Query: 246 ETVELQEPGPSNQTEVLRETVNFQEPDLSNQTEVLHRSTDHTSPPKFPEVEVMRDTHHDF 305
E V ++ S Q E L N + PDL + E + + + P P + + DF
Sbjct: 488 EIVSKEQESISCQNE-LTFFDNMRSPDLLSLNE-MEQFSSINELPLTPR-NMNHEMGDDF 544
Query: 306 SAGDLSPLFLD 316
+ GD +P LD
Sbjct: 545 NQGDSTPAGLD 555
>TAIR|locus:2164501 [details] [associations]
symbol:SYN2 species:3702 "Arabidopsis thaliana"
[GO:0000228 "nuclear chromosome" evidence=IEA] [GO:0003674
"molecular_function" evidence=ND] [GO:0005634 "nucleus"
evidence=ISM;ISS] [GO:0000798 "nuclear cohesin complex"
evidence=ISS] [GO:0007067 "mitosis" evidence=IEP;RCA] [GO:0006302
"double-strand break repair" evidence=RCA;IMP] [GO:0000278 "mitotic
cell cycle" evidence=RCA] [GO:0000724 "double-strand break repair
via homologous recombination" evidence=RCA] [GO:0000911
"cytokinesis by cell plate formation" evidence=RCA] [GO:0006261
"DNA-dependent DNA replication" evidence=RCA] [GO:0006275
"regulation of DNA replication" evidence=RCA] [GO:0006306 "DNA
methylation" evidence=RCA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=RCA] [GO:0007129 "synapsis"
evidence=RCA] [GO:0007131 "reciprocal meiotic recombination"
evidence=RCA] [GO:0009555 "pollen development" evidence=RCA]
[GO:0009560 "embryo sac egg cell differentiation" evidence=RCA]
[GO:0010212 "response to ionizing radiation" evidence=RCA]
[GO:0010332 "response to gamma radiation" evidence=RCA] [GO:0010564
"regulation of cell cycle process" evidence=RCA] [GO:0016444
"somatic cell DNA recombination" evidence=RCA] [GO:0016568
"chromatin modification" evidence=RCA] [GO:0031047 "gene silencing
by RNA" evidence=RCA] [GO:0043687 "post-translational protein
modification" evidence=RCA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=RCA] [GO:0051726 "regulation
of cell cycle" evidence=RCA] InterPro:IPR006909 InterPro:IPR006910
Pfam:PF04824 Pfam:PF04825 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0007059 GO:GO:0051301 GO:GO:0007067 GO:GO:0006302
EMBL:AB011477 KO:K06670 Gene3D:1.10.10.580 InterPro:IPR023093
EMBL:AF281154 EMBL:AF400126 EMBL:AF400127 IPI:IPI00520467
IPI:IPI00524230 RefSeq:NP_568586.2 RefSeq:NP_851110.1
UniGene:At.9228 ProteinModelPortal:Q9FQ20 STRING:Q9FQ20
PaxDb:Q9FQ20 PRIDE:Q9FQ20 EnsemblPlants:AT5G40840.2 GeneID:834084
KEGG:ath:AT5G40840 TAIR:At5g40840 eggNOG:NOG315638
HOGENOM:HOG000064652 InParanoid:Q9FQ20 OMA:AIWVAAY PhylomeDB:Q9FQ20
ProtClustDB:CLSN2680390 Genevestigator:Q9FQ20 GermOnline:AT5G40840
GO:GO:0000798 Uniprot:Q9FQ20
Length = 810
Score = 320 (117.7 bits), Expect = 1.0e-27, P = 1.0e-27
Identities = 104/325 (32%), Positives = 159/325 (48%)
Query: 1 MFYSQTFLARKGPLGTVWCAAHLQHRLKKSHYTSTNIPSTVDRIMCPDVP-IALRMSGHL 59
MFYS ++RKGPLG +W AA+ +LKKS +T+IPS+VD+I+ ++ + R+ +L
Sbjct: 1 MFYSHCLVSRKGPLGAIWVAAYFFKKLKKSQVKATHIPSSVDQILQKELDALTYRVLAYL 60
Query: 60 LLGVVRIYSKKVDYLYHDCNVFLISLRKTFSTVSVNLPEDATHAPAH----TVTLPQKFN 115
LLGVVRIYSKKVD+L+ DCN LI + K F N + PA ++ LP++F
Sbjct: 61 LLGVVRIYSKKVDFLFDDCNKALIGV-KEFVAKERNREKTGVSLPASIECFSIALPERFE 119
Query: 116 LDSVDLDDHTFDDEYDNHSRSQEDITLTD--QIPVGRDVYVAITFD--EDIMMD-----S 166
LD+ DL +D + + + EDITL D Q D+Y FD ED++ S
Sbjct: 120 LDAFDLG--VLEDFHGGNVKPHEDITLKDGSQETERMDMYSMERFDMEEDLLFTFHETFS 177
Query: 167 THPPEDVPDSGVRQMQ---DILRAPPSDADVGIQDPGPSNQTEVLNVTEDIQDPGASHQG 223
T+ E+ +S M+ + +R +A V + + P + E + D Q+ AS
Sbjct: 178 TNHNENKHESFAHDMELDAENVRDTTEEASVRVVEAEPLDSNEP---SRDHQN--ASRHR 232
Query: 224 ELPTDSEGLQEPGPSNQTEVLGETVELQEPGPSNQTEVLRETVNFQEPDLSNQTEVLHRS 283
E P + L EP S + E ++E +++ V+ E N LHR
Sbjct: 233 EDPESDDILLEPQMSEDIRIAQEEDTVRE----TICTIVQRLVDSHESSGDN----LHRD 284
Query: 284 --TDHTSPPKFPEVEVMRDTHHDFS 306
T++ K + + HD S
Sbjct: 285 GHTENLESEKTSKKTSCEEMQHDRS 309
>UNIPROTKB|F1PWJ5 [details] [associations]
symbol:RAD21L1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0000228 "nuclear chromosome"
evidence=IEA] InterPro:IPR006909 InterPro:IPR006910 Pfam:PF04824
Pfam:PF04825 GO:GO:0000228 GeneTree:ENSGT00390000011606
Gene3D:1.10.10.580 InterPro:IPR023093 CTD:642636 OMA:GMQSFSL
EMBL:AAEX03013845 RefSeq:XP_851946.2 Ensembl:ENSCAFT00000010977
GeneID:609572 KEGG:cfa:609572 Uniprot:F1PWJ5
Length = 555
Score = 298 (110.0 bits), Expect = 1.2e-27, Sum P(2) = 1.2e-27
Identities = 65/167 (38%), Positives = 102/167 (61%)
Query: 1 MFYSQTFLARKGPLGTVWCAAHLQHRLKKSHYTSTNIPSTVDRIMCPDVPIALRMSGHLL 60
MFY+ ++++GPL +W AAH + +L K+H N+ T+++I+ P V IALR SGHLL
Sbjct: 1 MFYTHVLMSKRGPLAKIWLAAHWEKKLTKAHVFECNLEITIEKIISPKVKIALRTSGHLL 60
Query: 61 LGVVRIYSKKVDYLYHDCNVFLISLRKTFSTVSVNLPEDATHAPAHTVTLPQKFNLDSVD 120
LGVVRIY++K YL DC+ L+ ++ TF V+LP++ A +TLP++F+ D
Sbjct: 61 LGVVRIYNRKAKYLLADCSEALLKMKMTFRPGLVDLPKENFEAAYSAITLPEEFH----D 116
Query: 121 LDDHTFD----DEYDNHSRSQ-EDITLTDQIPVGRDV-YVAITFDED 161
D H + E H++S+ E+ITL + G D+ + A +F E+
Sbjct: 117 FDTHNVNAIDVSEQFTHNQSRPEEITLREHY--GNDLLFQAGSFGEE 161
Score = 39 (18.8 bits), Expect = 1.2e-27, Sum P(2) = 1.2e-27
Identities = 18/68 (26%), Positives = 28/68 (41%)
Query: 232 LQEPGP---SNQTEVLGETVELQEPGPSNQTE-VLRETV-NFQEPDLSNQTEVLHRSTDH 286
L GP + ++GE L + G E E + N + D + E +H S +
Sbjct: 177 LNSSGPLAEHSSGSLIGEKSLLYDSGDGFGDEGAAGEMIDNLLQDDQNILLEDMHLSREI 236
Query: 287 TSPPKFPE 294
PP+ PE
Sbjct: 237 CLPPEPPE 244
>RGD|1594529 [details] [associations]
symbol:Rad21 "RAD21 homolog (S. pombe)" species:10116 "Rattus
norvegicus" [GO:0005634 "nucleus" evidence=ISO] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=IEA;ISO] [GO:0008278 "cohesin complex" evidence=ISO]
[GO:0034991 "nuclear meiotic cohesin complex" evidence=IEA;ISO]
[GO:0071168 "protein localization to chromatin" evidence=IEA;ISO]
[GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR006909
InterPro:IPR006910 Pfam:PF04824 Pfam:PF04825 RGD:1594529
GO:GO:0006357 GO:GO:0000228 EMBL:CH473950 GO:GO:0071168 CTD:5885
eggNOG:NOG249424 GeneTree:ENSGT00390000011606 HOGENOM:HOG000233800
HOVERGEN:HBG059956 KO:K06670 OMA:VPREEQQ OrthoDB:EOG47PX5K
Gene3D:1.10.10.580 InterPro:IPR023093 EMBL:BC099200 IPI:IPI00360494
RefSeq:NP_001020872.1 UniGene:Rn.3991 STRING:Q4KLH7
Ensembl:ENSRNOT00000006209 GeneID:314949 KEGG:rno:314949
UCSC:RGD:1594529 InParanoid:Q4KLH7 NextBio:668408
Genevestigator:Q4KLH7 Uniprot:Q4KLH7
Length = 635
Score = 304 (112.1 bits), Expect = 3.0e-26, P = 3.0e-26
Identities = 107/357 (29%), Positives = 170/357 (47%)
Query: 1 MFYSQTFLARKGPLGTVWCAAHLQHRLKKSHYTSTNIPSTVDRIMCPDVPIALRMSGHLL 60
MFY+ L+++GPL +W AAH +L K+H N+ S+V+ I+ P V +ALR SGHLL
Sbjct: 1 MFYAHFVLSKRGPLAKIWLAAHWDKKLTKAHVFECNLESSVESIISPKVKMALRTSGHLL 60
Query: 61 LGVVRIYSKKVDYLYHDCNVFLISLRKTFSTVSVNLPEDATHAPAHTVTLPQKFN-LDSV 119
LGVVRIY +K YL DCN I ++ F V+LPE+ A + +TLP++F+ D
Sbjct: 61 LGVVRIYHRKAKYLLADCNEAFIKIKMAFRPGVVDLPEENREAAYNAITLPEEFHDFDQP 120
Query: 120 --DLDDHTFDDEYD-NHSRSQEDITLTDQIPVGRDVYVAITFDEDIMMDSTHPPEDVPDS 176
DLDD ++ N SR +E IT+ ++ VG ++I + D D ++
Sbjct: 121 LPDLDDIDVAQQFSLNQSRVEE-ITMREE--VGN---ISILQENDFG-DFGMDDREIMRE 173
Query: 177 GVRQMQDILRAPPSDADVGIQ-DPGPSNQTEVLNVTE---DIQDP--GASHQGELPTDSE 230
G D + S +++ ++ + SN E +N E +D G + G + D
Sbjct: 174 GSAFEDDDMLVSTSASNLLLEPEQSTSNLNEKINHLEYEDQYKDDNFGEGNDGGILDDKL 233
Query: 231 -GLQEPGPSNQTEVLGET-VELQE-PGPSNQTEVLRETVNFQE-PDLSNQTEVLHRSTDH 286
+ G + L ET V L E P + E ++ + PD + E + TD
Sbjct: 234 ISNNDGGIFDDPPALSETGVMLPEQPAHDDMDEDDNGSLGGPDSPDSVDPVEPMPTMTDQ 293
Query: 287 TS-PPKFPE---VEVMRDTHHDFSAGDLSPLFLDVAKDITEPIVSSHQFSNEKEIQT 339
T+ P E +E + T + A L +D K++ + + Q S+ +I T
Sbjct: 294 TTLVPNEEEAFALEPIDITVKETKAKRKRKLIVDSVKELDSKTIRA-QLSDYSDIVT 349
>UNIPROTKB|E5RFV8 [details] [associations]
symbol:RAD21 "Double-strand-break repair protein rad21
homolog" species:9606 "Homo sapiens" [GO:0034991 "nuclear meiotic
cohesin complex" evidence=IEA] InterPro:IPR006910 Pfam:PF04825
HGNC:HGNC:9811 ChiTaRS:RAD21 EMBL:AC087350 IPI:IPI00980208
Ensembl:ENST00000517485 ArrayExpress:E5RFV8 Bgee:E5RFV8
Uniprot:E5RFV8
Length = 225
Score = 295 (108.9 bits), Expect = 4.0e-26, P = 4.0e-26
Identities = 63/150 (42%), Positives = 92/150 (61%)
Query: 1 MFYSQTFLARKGPLGTVWCAAHLQHRLKKSHYTSTNIPSTVDRIMCPDVPIALRMSGHLL 60
MFY+ L+++GPL +W AAH +L K+H N+ S+V+ I+ P V +ALR SGHLL
Sbjct: 1 MFYAHFVLSKRGPLAKIWLAAHWDKKLTKAHVFECNLESSVESIISPKVKMALRTSGHLL 60
Query: 61 LGVVRIYSKKVDYLYHDCNVFLISLRKTFSTVSVNLPEDATHAPAHTVTLPQKFN-LDSV 119
LGVVRIY +K YL DCN I ++ F V+LPE+ A + +TLP++F+ D
Sbjct: 61 LGVVRIYHRKAKYLLADCNEAFIKIKMAFRPGVVDLPEENREAAYNAITLPEEFHDFDQP 120
Query: 120 --DLDDHTFDDEYD-NHSRSQEDITLTDQI 146
DLDD ++ N SR +E IT+ +++
Sbjct: 121 LPDLDDIDVAQQFSLNQSRVEE-ITMREEV 149
>UNIPROTKB|E5RIN7 [details] [associations]
symbol:RAD21 "Double-strand-break repair protein rad21
homolog" species:9606 "Homo sapiens" [GO:0034991 "nuclear meiotic
cohesin complex" evidence=IEA] InterPro:IPR006910 Pfam:PF04825
HGNC:HGNC:9811 ChiTaRS:RAD21 EMBL:AC087350 IPI:IPI00982810
Ensembl:ENST00000520992 ArrayExpress:E5RIN7 Bgee:E5RIN7
Uniprot:E5RIN7
Length = 228
Score = 295 (108.9 bits), Expect = 4.0e-26, P = 4.0e-26
Identities = 63/150 (42%), Positives = 92/150 (61%)
Query: 1 MFYSQTFLARKGPLGTVWCAAHLQHRLKKSHYTSTNIPSTVDRIMCPDVPIALRMSGHLL 60
MFY+ L+++GPL +W AAH +L K+H N+ S+V+ I+ P V +ALR SGHLL
Sbjct: 1 MFYAHFVLSKRGPLAKIWLAAHWDKKLTKAHVFECNLESSVESIISPKVKMALRTSGHLL 60
Query: 61 LGVVRIYSKKVDYLYHDCNVFLISLRKTFSTVSVNLPEDATHAPAHTVTLPQKFN-LDSV 119
LGVVRIY +K YL DCN I ++ F V+LPE+ A + +TLP++F+ D
Sbjct: 61 LGVVRIYHRKAKYLLADCNEAFIKIKMAFRPGVVDLPEENREAAYNAITLPEEFHDFDQP 120
Query: 120 --DLDDHTFDDEYD-NHSRSQEDITLTDQI 146
DLDD ++ N SR +E IT+ +++
Sbjct: 121 LPDLDDIDVAQQFSLNQSRVEE-ITMREEV 149
>UNIPROTKB|D2HSB3 [details] [associations]
symbol:RAD21L1 "Double-strand-break repair protein
rad21-like protein 1" species:9646 "Ailuropoda melanoleuca"
[GO:0005634 "nucleus" evidence=ISS] [GO:0005694 "chromosome"
evidence=ISS] [GO:0007128 "meiotic prophase I" evidence=ISS]
[GO:0030893 "meiotic cohesin complex" evidence=ISS]
InterPro:IPR006909 InterPro:IPR006910 Pfam:PF04824 Pfam:PF04825
GO:GO:0005634 GO:GO:0007059 GO:GO:0000228 GO:GO:0007128
GO:GO:0030893 Gene3D:1.10.10.580 InterPro:IPR023093 EMBL:GL193270
RefSeq:XP_002925456.1 GeneID:100475087 KEGG:aml:100475087
CTD:642636 Uniprot:D2HSB3
Length = 554
Score = 299 (110.3 bits), Expect = 6.8e-26, P = 6.8e-26
Identities = 86/298 (28%), Positives = 152/298 (51%)
Query: 1 MFYSQTFLARKGPLGTVWCAAHLQHRLKKSHYTSTNIPSTVDRIMCPDVPIALRMSGHLL 60
MFY+ ++++GPL +W AAH + +L K+H N+ T+++I+ V IALR SGHLL
Sbjct: 1 MFYTHVLMSKRGPLAKIWLAAHWEKKLTKAHVFECNLEITIEKILSSKVKIALRTSGHLL 60
Query: 61 LGVVRIYSKKVDYLYHDCNVFLISLRKTFSTVSVNLPEDATHAPAHTVTLPQKF------ 114
LGVVRIY++K YL DCN L+ ++ TF V+LP++ A + +TLP++F
Sbjct: 61 LGVVRIYNRKAKYLLADCNEALLKMKMTFRPGLVDLPKENFEAAYNAITLPEEFHDFDTQ 120
Query: 115 NLDSVDLDDH-TFDDEYDNHSRSQEDIT--LTDQI-PVGRDVYVAIT---FDEDIMMDST 167
N++++D+ +H T + +ED + L Q G + + FD++I+++S+
Sbjct: 121 NVNAIDVSEHFTQNQSKPEEITLREDYSNDLLFQAGSFGEETEILRRHSFFDDNILLNSS 180
Query: 168 HPPEDVPDSGVRQMQDILRAPPSDADVGIQDPGPSNQTEVLNVTED-----IQDPGASHQ 222
P + + + + D++ G D G + + + N+ +D ++D + +
Sbjct: 181 GPLVEHSSGSIAGEKPLFY----DSEDGFGDEGAAGEM-IDNLLQDDQNILLEDSHLNRE 235
Query: 223 GELPTDSEGLQEPGPSNQTEVLGETVELQEPGPSNQTEVLRETVNFQ-EP-DLSNQTE 278
LP + P N E + L E G ++T + E F +P D+S+ E
Sbjct: 236 ISLPPEPPDTIVVEPDNP-----EYIRLPENGKMDET-LSNEEEGFTLDPIDVSDIAE 287
>UNIPROTKB|E1C938 [details] [associations]
symbol:RAD21L1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000228 "nuclear chromosome" evidence=IEA]
InterPro:IPR006909 InterPro:IPR006910 Pfam:PF04824 Pfam:PF04825
GO:GO:0000228 GeneTree:ENSGT00390000011606 Gene3D:1.10.10.580
InterPro:IPR023093 EMBL:AADN02019132 IPI:IPI00584752
Ensembl:ENSGALT00000009982 Uniprot:E1C938
Length = 602
Score = 282 (104.3 bits), Expect = 9.1e-26, Sum P(2) = 9.1e-26
Identities = 61/148 (41%), Positives = 89/148 (60%)
Query: 1 MFYSQTFLARKGPLGTVWCAAHLQHRLKKSHYTSTNIPSTVDRIMCPDVPIALRMSGHLL 60
MFY + R+GPL +W AAH + +L K+H N+ +T+ +I+ P IALR SGHLL
Sbjct: 1 MFYMHLLVNRRGPLAKIWLAAHWEKKLTKAHIFECNLEATIKKIVSPKFTIALRTSGHLL 60
Query: 61 LGVVRIYSKKVDYLYHDCNVFLISLRKTFSTVSVNLPEDATHAPAHTVTLPQKFNLDSVD 120
LGVVRIY +K YL DC+ L ++ F V+LPE++ A ++TLP++F+
Sbjct: 61 LGVVRIYHRKTKYLLSDCSEALTKMKTAFRPGLVDLPEESCEAAYQSITLPEEFHDFETT 120
Query: 121 LDD-HTFD--DEYD-NHSRSQEDITLTD 144
L D + D + + N SR+ EDITL +
Sbjct: 121 LPDLNAIDVAEHFTLNQSRA-EDITLKE 147
Score = 40 (19.1 bits), Expect = 9.1e-26, Sum P(2) = 9.1e-26
Identities = 13/46 (28%), Positives = 23/46 (50%)
Query: 207 VLNVTEDIQDPGASHQGELPTDSEGLQEPGPSNQTEVLGETVELQE 252
+L++ E++ P + E TD E P P++ T V E+ + E
Sbjct: 242 ILDMEEEL--PMSQDLQENSTDGELAAPPPPASYTAVKTESHLMNE 285
>UNIPROTKB|E1BTV6 [details] [associations]
symbol:RAD21L1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000228 "nuclear chromosome" evidence=IEA]
InterPro:IPR006909 InterPro:IPR006910 Pfam:PF04824 Pfam:PF04825
GO:GO:0000228 GeneTree:ENSGT00390000011606 Gene3D:1.10.10.580
InterPro:IPR023093 EMBL:AADN02019132 IPI:IPI00818854
Ensembl:ENSGALT00000039396 Uniprot:E1BTV6
Length = 613
Score = 282 (104.3 bits), Expect = 1.0e-25, Sum P(2) = 1.0e-25
Identities = 61/148 (41%), Positives = 89/148 (60%)
Query: 1 MFYSQTFLARKGPLGTVWCAAHLQHRLKKSHYTSTNIPSTVDRIMCPDVPIALRMSGHLL 60
MFY + R+GPL +W AAH + +L K+H N+ +T+ +I+ P IALR SGHLL
Sbjct: 1 MFYMHLLVNRRGPLAKIWLAAHWEKKLTKAHIFECNLEATIKKIVSPKFTIALRTSGHLL 60
Query: 61 LGVVRIYSKKVDYLYHDCNVFLISLRKTFSTVSVNLPEDATHAPAHTVTLPQKFNLDSVD 120
LGVVRIY +K YL DC+ L ++ F V+LPE++ A ++TLP++F+
Sbjct: 61 LGVVRIYHRKTKYLLSDCSEALTKMKTAFRPGLVDLPEESCEAAYQSITLPEEFHDFETT 120
Query: 121 LDD-HTFD--DEYD-NHSRSQEDITLTD 144
L D + D + + N SR+ EDITL +
Sbjct: 121 LPDLNAIDVAEHFTLNQSRA-EDITLKE 147
Score = 40 (19.1 bits), Expect = 1.0e-25, Sum P(2) = 1.0e-25
Identities = 13/46 (28%), Positives = 23/46 (50%)
Query: 207 VLNVTEDIQDPGASHQGELPTDSEGLQEPGPSNQTEVLGETVELQE 252
+L++ E++ P + E TD E P P++ T V E+ + E
Sbjct: 242 ILDMEEEL--PMSQDLQENSTDGELAAPPPPASYTAVKTESHLMNE 285
>UNIPROTKB|Q3SWX9 [details] [associations]
symbol:RAD21 "Double-strand-break repair protein rad21
homolog" species:9913 "Bos taurus" [GO:0071168 "protein
localization to chromatin" evidence=ISS] [GO:0000775 "chromosome,
centromeric region" evidence=IEA] [GO:0034991 "nuclear meiotic
cohesin complex" evidence=IEA] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0051301 "cell division" evidence=IEA] [GO:0007067 "mitosis"
evidence=IEA] [GO:0007059 "chromosome segregation" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] InterPro:IPR006909 InterPro:IPR006910
Pfam:PF04824 Pfam:PF04825 GO:GO:0006915 GO:GO:0007059 GO:GO:0000775
GO:GO:0051301 GO:GO:0007067 GO:GO:0006281 GO:GO:0006357
GO:GO:0000228 GO:GO:0071168 EMBL:BC104612 IPI:IPI00708412
RefSeq:NP_001029889.1 UniGene:Bt.15668 ProteinModelPortal:Q3SWX9
STRING:Q3SWX9 PRIDE:Q3SWX9 Ensembl:ENSBTAT00000009607 GeneID:540966
KEGG:bta:540966 CTD:5885 eggNOG:NOG249424
GeneTree:ENSGT00390000011606 HOGENOM:HOG000233800
HOVERGEN:HBG059956 InParanoid:Q3SWX9 KO:K06670 OMA:VPREEQQ
OrthoDB:EOG47PX5K NextBio:20878937 Gene3D:1.10.10.580
InterPro:IPR023093 Uniprot:Q3SWX9
Length = 630
Score = 299 (110.3 bits), Expect = 1.0e-25, P = 1.0e-25
Identities = 106/357 (29%), Positives = 169/357 (47%)
Query: 1 MFYSQTFLARKGPLGTVWCAAHLQHRLKKSHYTSTNIPSTVDRIMCPDVPIALRMSGHLL 60
MFY+ L+++GPL +W AAH +L K+H N+ S+V+ I+ P V +ALR SGHLL
Sbjct: 1 MFYAHFVLSKRGPLAKIWLAAHWDKKLTKAHVFECNLESSVESIISPKVKMALRTSGHLL 60
Query: 61 LGVVRIYSKKVDYLYHDCNVFLISLRKTFSTVSVNLPEDATHAPAHTVTLPQKFN-LDSV 119
LGVVRIY +K YL DCN I ++ F V+LPE+ A + +TLP++F+ D
Sbjct: 61 LGVVRIYHRKAKYLLADCNEAFIKIKMAFRPGVVDLPEENREAAYNAITLPEEFHDFDQP 120
Query: 120 --DLDDHTFDDEYD-NHSRSQEDITLTDQIPVGRDVYVAITFDEDIMMDSTHPPEDVPDS 176
DLDD ++ N SR +E IT+ ++ VG ++I + D D ++
Sbjct: 121 LPDLDDIDVAQQFSLNQSRVEE-ITMREE--VGN---ISILQENDFG-DFGMDDREIMRE 173
Query: 177 GVRQMQDILRAPPSDADVGIQ-DPGPSNQTEVLNVTE---DIQDP--GASHQGELPTDSE 230
G D + A +++ ++ + SN E +N E +D G + G + D
Sbjct: 174 GSAFEDDDMLASTGASNLLLEPEQSTSNLNEKINHLEYEDQYKDDNFGEGNDGGILDDKL 233
Query: 231 -GLQEPGPSNQTEVLGET-VELQE-PGPSNQTEVLRETVNFQE-PDLSNQTEVLHRSTDH 286
+ G + L E V L E P + E ++ + PD + E + TD
Sbjct: 234 ISNNDGGIFDDPPALSEAGVMLPEQPAHDDMDEDDNVSMGGPDSPDSVDPVEPMPTMTDQ 293
Query: 287 TS-PPKFPE---VEVMRDTHHDFSAGDLSPLFLDVAKDITEPIVSSHQFSNEKEIQT 339
T+ P E +E + T + A L +D K++ + + Q S+ +I T
Sbjct: 294 TTLVPNEEEAFALEPIDITVKETKAKRKRKLIVDSVKELDSKTIRA-QLSDYSDIVT 349
>UNIPROTKB|E2QRU9 [details] [associations]
symbol:RAD21 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071168 "protein localization to chromatin"
evidence=IEA] [GO:0034991 "nuclear meiotic cohesin complex"
evidence=IEA] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=IEA] InterPro:IPR006909
InterPro:IPR006910 Pfam:PF04824 Pfam:PF04825 GO:GO:0006357
GO:GO:0000228 GO:GO:0071168 CTD:5885 GeneTree:ENSGT00390000011606
KO:K06670 OMA:VPREEQQ Gene3D:1.10.10.580 InterPro:IPR023093
EMBL:AAEX03008760 RefSeq:XP_539142.2 Ensembl:ENSCAFT00000001286
GeneID:482021 KEGG:cfa:482021 NextBio:20856709 Uniprot:E2QRU9
Length = 631
Score = 299 (110.3 bits), Expect = 1.0e-25, P = 1.0e-25
Identities = 106/357 (29%), Positives = 169/357 (47%)
Query: 1 MFYSQTFLARKGPLGTVWCAAHLQHRLKKSHYTSTNIPSTVDRIMCPDVPIALRMSGHLL 60
MFY+ L+++GPL +W AAH +L K+H N+ S+V+ I+ P V +ALR SGHLL
Sbjct: 1 MFYAHFVLSKRGPLAKIWLAAHWDKKLTKAHVFECNLESSVESIISPKVKMALRTSGHLL 60
Query: 61 LGVVRIYSKKVDYLYHDCNVFLISLRKTFSTVSVNLPEDATHAPAHTVTLPQKFN-LDSV 119
LGVVRIY +K YL DCN I ++ F V+LPE+ A + +TLP++F+ D
Sbjct: 61 LGVVRIYHRKAKYLLADCNEAFIKIKMAFRPGVVDLPEENREAAYNAITLPEEFHDFDQP 120
Query: 120 --DLDDHTFDDEYD-NHSRSQEDITLTDQIPVGRDVYVAITFDEDIMMDSTHPPEDVPDS 176
DLDD ++ N SR +E IT+ ++ VG ++I + D D ++
Sbjct: 121 LPDLDDIDVAQQFSLNQSRVEE-ITMREE--VGN---ISILQENDFG-DFGMDDREIMRE 173
Query: 177 GVRQMQDILRAPPSDADVGIQ-DPGPSNQTEVLNVTE---DIQDP--GASHQGELPTDSE 230
G D + S +++ ++ + SN E +N E +D G + G + D
Sbjct: 174 GSAFEDDDMLVSTSASNLLLEPEQSTSNLNEKINHLEYEDQYKDDNFGEGNDGGILDDKL 233
Query: 231 -GLQEPGPSNQTEVLGET-VELQE-PGPSNQTEVLRETVNFQE-PDLSNQTEVLHRSTDH 286
+ G + L E V L E P + E ++ + PD + E + TD
Sbjct: 234 ISNNDGGIFDDPPALSEAGVMLPEQPAHDDMDEDDNVSMGGPDSPDSVDPVEPMPTMTDQ 293
Query: 287 TS-PPKFPE---VEVMRDTHHDFSAGDLSPLFLDVAKDITEPIVSSHQFSNEKEIQT 339
T+ P E +E + T + A L +D K++ + + Q S+ +I T
Sbjct: 294 TTLVPNEEEAFALEPIDITVKETKAKRKRKLIVDSVKELDSKTIRA-QLSDYSDIVT 349
>UNIPROTKB|F1S1K0 [details] [associations]
symbol:LOC100738633 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0000228 "nuclear chromosome" evidence=IEA]
InterPro:IPR006909 InterPro:IPR006910 Pfam:PF04824 Pfam:PF04825
GO:GO:0000228 GeneTree:ENSGT00390000011606 KO:K06670 OMA:VPREEQQ
Gene3D:1.10.10.580 InterPro:IPR023093 EMBL:AEMK01148771
EMBL:CU467777 EMBL:CU656020 RefSeq:XP_003481396.1
Ensembl:ENSSSCT00000006600 Ensembl:ENSSSCT00000033947
GeneID:100738633 KEGG:ssc:100738633 Uniprot:F1S1K0
Length = 631
Score = 299 (110.3 bits), Expect = 1.0e-25, P = 1.0e-25
Identities = 106/357 (29%), Positives = 169/357 (47%)
Query: 1 MFYSQTFLARKGPLGTVWCAAHLQHRLKKSHYTSTNIPSTVDRIMCPDVPIALRMSGHLL 60
MFY+ L+++GPL +W AAH +L K+H N+ S+V+ I+ P V +ALR SGHLL
Sbjct: 1 MFYAHFVLSKRGPLAKIWLAAHWDKKLTKAHVFECNLESSVESIISPKVKMALRTSGHLL 60
Query: 61 LGVVRIYSKKVDYLYHDCNVFLISLRKTFSTVSVNLPEDATHAPAHTVTLPQKFN-LDSV 119
LGVVRIY +K YL DCN I ++ F V+LPE+ A + +TLP++F+ D
Sbjct: 61 LGVVRIYHRKAKYLLADCNEAFIKIKMAFRPGVVDLPEENREAAYNAITLPEEFHDFDQP 120
Query: 120 --DLDDHTFDDEYD-NHSRSQEDITLTDQIPVGRDVYVAITFDEDIMMDSTHPPEDVPDS 176
DLDD ++ N SR +E IT+ ++ VG ++I + D D ++
Sbjct: 121 LPDLDDIDVAQQFSLNQSRVEE-ITMREE--VGN---ISILQENDFG-DFGMDDREIMRE 173
Query: 177 GVRQMQDILRAPPSDADVGIQ-DPGPSNQTEVLNVTE---DIQDP--GASHQGELPTDSE 230
G D + S +++ ++ + SN E +N E +D G + G + D
Sbjct: 174 GSAFEDDDMLVSTSASNLLLEPEQSTSNLNEKINHLEYEDQYKDDNFGEGNDGGILDDKL 233
Query: 231 -GLQEPGPSNQTEVLGET-VELQE-PGPSNQTEVLRETVNFQE-PDLSNQTEVLHRSTDH 286
+ G + L E V L E P + E ++ + PD + E + TD
Sbjct: 234 ISNNDGGIFDDPPALSEAGVMLPEQPAHDDMDEDDNVSMGGPDSPDSVDPVEPMPTMTDQ 293
Query: 287 TS-PPKFPE---VEVMRDTHHDFSAGDLSPLFLDVAKDITEPIVSSHQFSNEKEIQT 339
T+ P E +E + T + A L +D K++ + + Q S+ +I T
Sbjct: 294 TTLVPNEEEAFALEPIDITVKETKAKRKRKLIVDSVKELDSKTIRA-QLSDYSDIVT 349
>MGI|MGI:108016 [details] [associations]
symbol:Rad21 "RAD21 homolog (S. pombe)" species:10090 "Mus
musculus" [GO:0000228 "nuclear chromosome" evidence=IEA]
[GO:0000775 "chromosome, centromeric region" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005694 "chromosome" evidence=IEA] [GO:0006281
"DNA repair" evidence=IEA] [GO:0006357 "regulation of transcription
from RNA polymerase II promoter" evidence=ISO] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0006974 "response to DNA
damage stimulus" evidence=IEA] [GO:0007049 "cell cycle"
evidence=IEA] [GO:0007059 "chromosome segregation" evidence=IEA]
[GO:0007067 "mitosis" evidence=IEA] [GO:0008278 "cohesin complex"
evidence=IDA] [GO:0034991 "nuclear meiotic cohesin complex"
evidence=IDA] [GO:0051301 "cell division" evidence=IEA] [GO:0071168
"protein localization to chromatin" evidence=ISO]
InterPro:IPR006909 InterPro:IPR006910 Pfam:PF04824 Pfam:PF04825
MGI:MGI:108016 GO:GO:0006915 GO:GO:0007059 GO:GO:0005654
GO:GO:0000775 GO:GO:0051301 GO:GO:0007067 GO:GO:0006281
GO:GO:0006357 Reactome:REACT_118161 Reactome:REACT_120463
Reactome:REACT_75800 GO:GO:0071168 CTD:5885 eggNOG:NOG249424
GeneTree:ENSGT00390000011606 HOGENOM:HOG000233800
HOVERGEN:HBG059956 KO:K06670 OMA:VPREEQQ OrthoDB:EOG47PX5K
Gene3D:1.10.10.580 InterPro:IPR023093 ChiTaRS:RAD21 EMBL:D49429
EMBL:X98293 EMBL:AF332086 EMBL:AF332085 EMBL:AK004746 EMBL:AK163992
EMBL:BC043032 IPI:IPI00329840 PIR:JC4248 RefSeq:NP_033035.3
UniGene:Mm.182628 ProteinModelPortal:Q61550 SMR:Q61550
DIP:DIP-56655N IntAct:Q61550 STRING:Q61550 PhosphoSite:Q61550
PaxDb:Q61550 PRIDE:Q61550 Ensembl:ENSMUST00000022927 GeneID:19357
KEGG:mmu:19357 InParanoid:Q810A8 NextBio:296405 Bgee:Q61550
CleanEx:MM_RAD21 Genevestigator:Q61550
GermOnline:ENSMUSG00000022314 GO:GO:0034991 Uniprot:Q61550
Length = 635
Score = 299 (110.3 bits), Expect = 1.0e-25, P = 1.0e-25
Identities = 106/357 (29%), Positives = 169/357 (47%)
Query: 1 MFYSQTFLARKGPLGTVWCAAHLQHRLKKSHYTSTNIPSTVDRIMCPDVPIALRMSGHLL 60
MFY+ L+++GPL +W AAH +L K+H N+ S+V+ I+ P V +ALR SGHLL
Sbjct: 1 MFYAHFVLSKRGPLAKIWLAAHWDKKLTKAHVFECNLESSVESIISPKVKMALRTSGHLL 60
Query: 61 LGVVRIYSKKVDYLYHDCNVFLISLRKTFSTVSVNLPEDATHAPAHTVTLPQKFN-LDSV 119
LGVVRIY +K YL DCN I ++ F V+LPE+ A + +TLP++F+ D
Sbjct: 61 LGVVRIYHRKAKYLLADCNEAFIKIKMAFRPGVVDLPEENREAAYNAITLPEEFHDFDQP 120
Query: 120 --DLDDHTFDDEYD-NHSRSQEDITLTDQIPVGRDVYVAITFDEDIMMDSTHPPEDVPDS 176
DLDD ++ N SR +E IT+ ++ VG ++I + D D ++
Sbjct: 121 LPDLDDIDVAQQFSLNQSRVEE-ITMREE--VGN---ISILQENDFG-DFGMDDREIMRE 173
Query: 177 GVRQMQDILRAPPSDADVGIQ-DPGPSNQTEVLNVTE---DIQDP--GASHQGELPTDSE 230
G D + S +++ ++ + SN E +N E +D G + G + D
Sbjct: 174 GSAFEDDDMLVSTSASNLLLEPEQSTSNLNEKMNHLEYEDQYKDDNFGEGNDGGILDDKL 233
Query: 231 -GLQEPGPSNQTEVLGET-VELQE-PGPSNQTEVLRETVNFQE-PDLSNQTEVLHRSTDH 286
+ G + L E V L E P + E ++ + PD + E + TD
Sbjct: 234 ISNNDGGIFDDPPALSEAGVMLPEQPAHDDMDEDDNGSLGGPDSPDSVDPVEPMPTMTDQ 293
Query: 287 TS-PPKFPE---VEVMRDTHHDFSAGDLSPLFLDVAKDITEPIVSSHQFSNEKEIQT 339
T+ P E +E + T + A L +D K++ + + Q S+ +I T
Sbjct: 294 TTLVPNEEEAFALEPIDITVKETKAKRKRKLIVDSVKELDSKTIRA-QLSDYSDIVT 349
>UNIPROTKB|F1S874 [details] [associations]
symbol:RAD21L1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0070197 "attachment of telomeric heterochromatin to
nuclear envelope" evidence=IEA] [GO:0030893 "meiotic cohesin
complex" evidence=IEA] [GO:0007283 "spermatogenesis" evidence=IEA]
[GO:0007129 "synapsis" evidence=IEA] [GO:0007128 "meiotic prophase
I" evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=IEA] [GO:0000800 "lateral element" evidence=IEA]
InterPro:IPR006910 Pfam:PF04825 GO:GO:0005634 GO:GO:0007128
GO:GO:0030893 GeneTree:ENSGT00390000011606 OMA:GMQSFSL
EMBL:FP236274 Ensembl:ENSSSCT00000007870 Uniprot:F1S874
Length = 469
Score = 294 (108.6 bits), Expect = 1.1e-25, P = 1.1e-25
Identities = 59/163 (36%), Positives = 100/163 (61%)
Query: 1 MFYSQTFLARKGPLGTVWCAAHLQHRLKKSHYTSTNIPSTVDRIMCPDVPIALRMSGHLL 60
MFY+ ++++GPL +W AAH + +L K+H N+ T+++I+ P V IALR SGHLL
Sbjct: 1 MFYTHVLMSKRGPLAKIWLAAHWEKKLTKAHVFECNLEITIEKILSPKVKIALRTSGHLL 60
Query: 61 LGVVRIYSKKVDYLYHDCNVFLISLRKTFSTVSVNLPEDATHAPAHTVTLPQKFN-LDSV 119
LGVVRIY++K YL DC+ L+ ++ TF V+LP+++ A +TLP++F+ D+
Sbjct: 61 LGVVRIYNRKAKYLLADCSEALLKMKMTFRPGLVDLPKESFEATYTAITLPEEFHDFDTQ 120
Query: 120 DLDDHTFDDEYDNHSRSQEDITLTDQIPVGRDV-YVAITFDED 161
+++ + + + E+I L + G D+ + A +F E+
Sbjct: 121 NVNAIDISEHFTPNQSKPEEIPLKEDF--GNDLLFPAGSFGEE 161
>UNIPROTKB|O60216 [details] [associations]
symbol:RAD21 "Double-strand-break repair protein rad21
homolog" species:9606 "Homo sapiens" [GO:0006915 "apoptotic
process" evidence=IEA] [GO:0007059 "chromosome segregation"
evidence=IEA] [GO:0051301 "cell division" evidence=IEA] [GO:0034991
"nuclear meiotic cohesin complex" evidence=IEA] [GO:0000775
"chromosome, centromeric region" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0071168 "protein localization to
chromatin" evidence=IMP] [GO:0006302 "double-strand break repair"
evidence=TAS] [GO:0006310 "DNA recombination" evidence=TAS]
[GO:0007131 "reciprocal meiotic recombination" evidence=TAS]
[GO:0000087 "M phase of mitotic cell cycle" evidence=TAS]
[GO:0000236 "mitotic prometaphase" evidence=TAS] [GO:0000278
"mitotic cell cycle" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0007091 "metaphase/anaphase transition of mitotic
cell cycle" evidence=TAS] [GO:0006357 "regulation of transcription
from RNA polymerase II promoter" evidence=IDA] [GO:0008278 "cohesin
complex" evidence=TAS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR006909
InterPro:IPR006910 Pfam:PF04824 Pfam:PF04825 GO:GO:0006915
Reactome:REACT_115566 GO:GO:0007059 EMBL:CH471060 GO:GO:0005654
Reactome:REACT_21300 GO:GO:0000775 GO:GO:0051301 GO:GO:0006357
Reactome:REACT_111183 GO:GO:0006302 GO:GO:0007091 GO:GO:0007131
GO:GO:0000228 GO:GO:0000236 GO:GO:0008278 Orphanet:199
GO:GO:0071168 CTD:5885 eggNOG:NOG249424 HOGENOM:HOG000233800
HOVERGEN:HBG059956 KO:K06670 OMA:VPREEQQ OrthoDB:EOG47PX5K
Gene3D:1.10.10.580 InterPro:IPR023093 EMBL:X98294 EMBL:D38551
EMBL:AY675320 EMBL:AK289505 EMBL:BC050381 IPI:IPI00006715
RefSeq:NP_006256.1 UniGene:Hs.81848 ProteinModelPortal:O60216
SMR:O60216 DIP:DIP-29201N IntAct:O60216 MINT:MINT-2999858
STRING:O60216 PhosphoSite:O60216 PaxDb:O60216 PeptideAtlas:O60216
PRIDE:O60216 Ensembl:ENST00000297338 GeneID:5885 KEGG:hsa:5885
UCSC:uc003yod.3 GeneCards:GC08M117858 HGNC:HGNC:9811 HPA:CAB022065
HPA:HPA020044 MIM:606462 MIM:614701 neXtProt:NX_O60216
PharmGKB:PA34170 InParanoid:O60216 PhylomeDB:O60216
BioCyc:MetaCyc:ENSG00000164754-MONOMER ChiTaRS:RAD21
GenomeRNAi:5885 NextBio:22884 PMAP-CutDB:O60216 ArrayExpress:O60216
Bgee:O60216 CleanEx:HS_RAD21 Genevestigator:O60216
GermOnline:ENSG00000164754 Uniprot:O60216
Length = 631
Score = 298 (110.0 bits), Expect = 1.3e-25, P = 1.3e-25
Identities = 105/356 (29%), Positives = 167/356 (46%)
Query: 1 MFYSQTFLARKGPLGTVWCAAHLQHRLKKSHYTSTNIPSTVDRIMCPDVPIALRMSGHLL 60
MFY+ L+++GPL +W AAH +L K+H N+ S+V+ I+ P V +ALR SGHLL
Sbjct: 1 MFYAHFVLSKRGPLAKIWLAAHWDKKLTKAHVFECNLESSVESIISPKVKMALRTSGHLL 60
Query: 61 LGVVRIYSKKVDYLYHDCNVFLISLRKTFSTVSVNLPEDATHAPAHTVTLPQKFN-LDSV 119
LGVVRIY +K YL DCN I ++ F V+LPE+ A + +TLP++F+ D
Sbjct: 61 LGVVRIYHRKAKYLLADCNEAFIKIKMAFRPGVVDLPEENREAAYNAITLPEEFHDFDQP 120
Query: 120 --DLDDHTFDDEYD-NHSRSQEDITLTDQIPVGRDVYVAITFDEDIMMDSTHPPEDVPDS 176
DLDD ++ N SR +E IT+ ++ VG ++I + D E + +
Sbjct: 121 LPDLDDIDVAQQFSLNQSRVEE-ITMREE--VGN---ISILQENDFGDFGMDDREIMREG 174
Query: 177 GVRQMQDILRAPPSDADVGIQDPGPSNQTEVLNVTE---DIQDP--GASHQGELPTDSE- 230
+ D+L + + + + SN E +N E +D G + G + D
Sbjct: 175 SAFEDDDMLVSTTTSNLLLESEQSTSNLNEKINHLEYEDQYKDDNFGEGNDGGILDDKLI 234
Query: 231 GLQEPGPSNQTEVLGET-VELQE-PGPSNQTEVLRETVNFQE-PDLSNQTEVLHRSTDHT 287
+ G + L E V L E P + E ++ + PD + E + TD T
Sbjct: 235 SNNDGGIFDDPPALSEAGVMLPEQPAHDDMDEDDNVSMGGPDSPDSVDPVEPMPTMTDQT 294
Query: 288 S-PPKFPE---VEVMRDTHHDFSAGDLSPLFLDVAKDITEPIVSSHQFSNEKEIQT 339
+ P E +E + T + A L +D K++ + + Q S+ +I T
Sbjct: 295 TLVPNEEEAFALEPIDITVKETKAKRKRKLIVDSVKELDSKTIRA-QLSDYSDIVT 349
>ZFIN|ZDB-GENE-030131-994 [details] [associations]
symbol:rad21a "RAD21 homolog (S. pombe) a"
species:7955 "Danio rerio" [GO:0000228 "nuclear chromosome"
evidence=IEA] [GO:0007064 "mitotic sister chromatid cohesion"
evidence=IMP] [GO:0043280 "positive regulation of cysteine-type
endopeptidase activity involved in apoptotic process" evidence=IMP]
[GO:0043565 "sequence-specific DNA binding" evidence=IDA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=IMP] InterPro:IPR006909 InterPro:IPR006910
Pfam:PF04824 Pfam:PF04825 ZFIN:ZDB-GENE-030131-994 GO:GO:0043565
GO:GO:0006357 GO:GO:0043280 GO:GO:0000228 GO:GO:0007064
HOVERGEN:HBG059956 KO:K06670 Gene3D:1.10.10.580 InterPro:IPR023093
EMBL:BC045311 IPI:IPI01005011 RefSeq:NP_955889.1 UniGene:Dr.94731
ProteinModelPortal:Q7ZW30 STRING:Q7ZW30 GeneID:322275
KEGG:dre:322275 CTD:322275 InParanoid:Q7ZW30 NextBio:20807742
ArrayExpress:Q7ZW30 Uniprot:Q7ZW30
Length = 643
Score = 298 (110.0 bits), Expect = 1.4e-25, P = 1.4e-25
Identities = 64/150 (42%), Positives = 92/150 (61%)
Query: 1 MFYSQTFLARKGPLGTVWCAAHLQHRLKKSHYTSTNIPSTVDRIMCPDVPIALRMSGHLL 60
MFY+ L+++GPL +W AAH +L K+H N+ S+V+ I+ P V +ALR SGHLL
Sbjct: 1 MFYAHFVLSKRGPLAKIWLAAHWDKKLTKAHVFECNLESSVESIISPKVKMALRTSGHLL 60
Query: 61 LGVVRIYSKKVDYLYHDCNVFLISLRKTFSTVSVNLPEDATHAPAHTVTLPQKFN-LDSV 119
LGVVRIY +K YL DCN I ++ F V+LPED A + +TLP++F+ D
Sbjct: 61 LGVVRIYHRKAKYLLADCNEAFIKIKMAFRPGVVDLPEDNREAAYNAITLPEEFHDFDQP 120
Query: 120 --DLDDHTFDDEYD-NHSRSQEDITLTDQI 146
DLDD ++ N SR +E IT+ +++
Sbjct: 121 LPDLDDIDVAQQFTLNQSRVEE-ITMREEV 149
>UNIPROTKB|Q9H4I0 [details] [associations]
symbol:RAD21L1 "Double-strand-break repair protein
rad21-like protein 1" species:9606 "Homo sapiens" [GO:0007059
"chromosome segregation" evidence=IEA] [GO:0000800 "lateral
element" evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=IEA] [GO:0007129 "synapsis" evidence=IEA] [GO:0007283
"spermatogenesis" evidence=IEA] [GO:0070197 "attachment of
telomeric heterochromatin to nuclear envelope" evidence=IEA]
[GO:0030893 "meiotic cohesin complex" evidence=ISS] [GO:0005694
"chromosome" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0007128 "meiotic prophase I" evidence=ISS] InterPro:IPR006909
InterPro:IPR006910 Pfam:PF04824 Pfam:PF04825 GO:GO:0005634
GO:GO:0007059 GO:GO:0000228 GO:GO:0007128 EMBL:AL136531
GO:GO:0030893 EMBL:AL031665 HOGENOM:HOG000233800 HOVERGEN:HBG059956
Gene3D:1.10.10.580 InterPro:IPR023093 CTD:642636 EMBL:BC157891
EMBL:BC171911 IPI:IPI00878979 IPI:IPI00916789 RefSeq:NP_001130038.2
UniGene:Hs.713451 ProteinModelPortal:Q9H4I0 SMR:Q9H4I0
PhosphoSite:Q9H4I0 DMDM:259016327 PaxDb:Q9H4I0 PRIDE:Q9H4I0
Ensembl:ENST00000381882 Ensembl:ENST00000402452
Ensembl:ENST00000409241 GeneID:642636 KEGG:hsa:642636
UCSC:uc010gab.1 GeneCards:GC20P001206 HGNC:HGNC:16271 HPA:HPA053282
neXtProt:NX_Q9H4I0 PharmGKB:PA34171 eggNOG:NOG301899 OMA:GMQSFSL
OrthoDB:EOG49S67J NextBio:114018 ArrayExpress:Q9H4I0 Bgee:Q9H4I0
Genevestigator:Q9H4I0 Uniprot:Q9H4I0
Length = 556
Score = 296 (109.3 bits), Expect = 1.5e-25, P = 1.5e-25
Identities = 64/168 (38%), Positives = 103/168 (61%)
Query: 1 MFYSQTFLARKGPLGTVWCAAHLQHRLKKSHYTSTNIPSTVDRIMCPDVPIALRMSGHLL 60
MFY+ ++++GPL +W AAH + +L K+H N+ T+++I+ P V IALR SGHLL
Sbjct: 1 MFYTHVLMSKRGPLAKIWLAAHWEKKLTKAHVFECNLEITIEKILSPKVKIALRTSGHLL 60
Query: 61 LGVVRIYSKKVDYLYHDCNVFLISLRKTFSTVSVNLPEDATHAPAHTVTLPQKF------ 114
LGVVRIY++K YL DC+ + ++ TF V+LP++ A + +TLP++F
Sbjct: 61 LGVVRIYNRKAKYLLADCSEAFLKMKMTFCPGLVDLPKENFEASYNAITLPEEFHDFDTQ 120
Query: 115 NLDSVDLDDHTFDDEYDNHSRSQEDITLTDQIPVGRD-VYVAITFDED 161
N++++D+ +H F N SR +E ITL + D ++ A +F E+
Sbjct: 121 NMNAIDVSEH-FTQ---NQSRPEE-ITLRENFD--NDLIFQAESFGEE 161
>UNIPROTKB|E1B9J3 [details] [associations]
symbol:RAD21L1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0070197 "attachment of telomeric heterochromatin to
nuclear envelope" evidence=IEA] [GO:0030893 "meiotic cohesin
complex" evidence=IEA] [GO:0007283 "spermatogenesis" evidence=IEA]
[GO:0007129 "synapsis" evidence=IEA] [GO:0007128 "meiotic prophase
I" evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=IEA] [GO:0000800 "lateral element" evidence=IEA]
InterPro:IPR006909 InterPro:IPR006910 Pfam:PF04824 Pfam:PF04825
GO:GO:0000228 GO:GO:0007128 GO:GO:0030893
GeneTree:ENSGT00390000011606 Gene3D:1.10.10.580 InterPro:IPR023093
OMA:GMQSFSL EMBL:DAAA02036365 IPI:IPI00704766
Ensembl:ENSBTAT00000001812 Uniprot:E1B9J3
Length = 557
Score = 295 (108.9 bits), Expect = 1.9e-25, P = 1.9e-25
Identities = 65/167 (38%), Positives = 103/167 (61%)
Query: 1 MFYSQTFLARKGPLGTVWCAAHLQHRLKKSHYTSTNIPSTVDRIMCPDVPIALRMSGHLL 60
MFY+ ++++GPL +W AAH + +L K+H N+ T+++I+ P V IALR SGHLL
Sbjct: 1 MFYTHVLMSKRGPLAKIWLAAHWEKKLTKAHVFECNLEITIEKILSPKVKIALRTSGHLL 60
Query: 61 LGVVRIYSKKVDYLYHDCNVFLISLRKTFSTVSVNLPEDATHAPAHTVTLPQKFNLDSVD 120
LGVVRIY++K YL DC+ L+ ++ TF V+LP+++ A T+TLP++F+ D
Sbjct: 61 LGVVRIYNRKAKYLLADCSEALLKMKMTFRPGLVDLPKESFEAAYSTITLPEEFH----D 116
Query: 121 LDDHTFD----DEYDNHSRSQ-EDITLTDQIPVGRDV-YVAITFDED 161
D T + E ++S+ E+ITL + G D+ + A +F E+
Sbjct: 117 FDTQTMNAIDVSECSIQNQSKPEEITLREDY--GNDLLFHAGSFGEE 161
>ZFIN|ZDB-GENE-060503-223 [details] [associations]
symbol:rad21b "RAD21 homolog (S. pombe) b"
species:7955 "Danio rerio" [GO:0000228 "nuclear chromosome"
evidence=IEA] InterPro:IPR006909 InterPro:IPR006910 Pfam:PF04824
Pfam:PF04825 ZFIN:ZDB-GENE-060503-223 EMBL:CR786578 GO:GO:0000228
eggNOG:NOG249424 GeneTree:ENSGT00390000011606 HOGENOM:HOG000233800
HOVERGEN:HBG059956 KO:K06670 OMA:VPREEQQ OrthoDB:EOG47PX5K
Gene3D:1.10.10.580 InterPro:IPR023093 EMBL:CR848704 IPI:IPI00491569
RefSeq:NP_001038585.1 UniGene:Dr.84558 Ensembl:ENSDART00000051717
Ensembl:ENSDART00000132800 GeneID:566831 KEGG:dre:566831 CTD:566831
NextBio:20888396 Uniprot:Q1L8E1
Length = 637
Score = 296 (109.3 bits), Expect = 2.2e-25, P = 2.2e-25
Identities = 97/302 (32%), Positives = 142/302 (47%)
Query: 1 MFYSQTFLARKGPLGTVWCAAHLQHRLKKSHYTSTNIPSTVDRIMCPDVPIALRMSGHLL 60
MFY+ L+++GPL +W AAH +L K+H N+ S+V+ I+ P V +ALR SGHLL
Sbjct: 1 MFYAHFVLSKRGPLAKIWLAAHWDKKLTKAHVFECNLESSVESIISPKVKMALRTSGHLL 60
Query: 61 LGVVRIYSKKVDYLYHDCNVFLISLRKTFSTVSVNLPEDATHAPAHTVTLPQKFN-LDSV 119
LGVVRIY +K YL DCN I ++ F V+LPE+ A + +TLP++F+ D
Sbjct: 61 LGVVRIYHRKAKYLLADCNEAFIKIKMAFRPGVVDLPEENREAAYNAITLPEEFHDFDQP 120
Query: 120 --DLDDHTFDDEYD-NHSRSQEDITLTDQIPVGRDVYVAITFDEDIMMDSTHPPEDVPDS 176
DLDD ++ N SR +E IT+ ++ VG + D MD E + +
Sbjct: 121 LPDLDDIDVAQQFTLNQSRVEE-ITMREE--VGNLSLLQENDFADFGMDDR---EMMREE 174
Query: 177 GVRQMQDILRAPPSDA-----DVGIQDPGPSNQTEVLNVTEDIQD-PGASHQGELPTDSE 230
G ++ I A S+ +Q +N E +D D P S +G + D
Sbjct: 175 GAFEVDIIHGASASNLLLESESSSVQIADKTNHLEYDQYKDDFGDNPMESTEGGMLVDKL 234
Query: 231 GLQEPGPS--NQTEVLGETVEL-QEPGPSNQTEV--LRETVNFQEPDLSNQTEVLHRSTD 285
E G + + E V + Q+ G + + L PD S E L TD
Sbjct: 235 LSNEDGGGIFDDPPAIPEGVMMPQDHGADDDDDFDNLSPAGGPDSPD-SGPVEPLPTMTD 293
Query: 286 HT 287
T
Sbjct: 294 QT 295
>ZFIN|ZDB-GENE-061103-505 [details] [associations]
symbol:rad21l1 "RAD21-like 1 (S. pombe)"
species:7955 "Danio rerio" [GO:0000228 "nuclear chromosome"
evidence=IEA] [GO:0003674 "molecular_function" evidence=ND]
InterPro:IPR006909 InterPro:IPR006910 Pfam:PF04824 Pfam:PF04825
ZFIN:ZDB-GENE-061103-505 GO:GO:0000228 eggNOG:NOG249424
GeneTree:ENSGT00390000011606 HOGENOM:HOG000233800
HOVERGEN:HBG059956 Gene3D:1.10.10.580 InterPro:IPR023093 CTD:642636
EMBL:CU467960 EMBL:BC125933 IPI:IPI00771566 RefSeq:NP_001073519.1
UniGene:Dr.84879 Ensembl:ENSDART00000079631 GeneID:571082
KEGG:dre:571082 InParanoid:A0JMM5 OMA:TLKEDFG OrthoDB:EOG4GB773
NextBio:20890409 Uniprot:A0JMM5
Length = 546
Score = 294 (108.6 bits), Expect = 2.3e-25, P = 2.3e-25
Identities = 60/147 (40%), Positives = 89/147 (60%)
Query: 1 MFYSQTFLARKGPLGTVWCAAHLQHRLKKSHYTSTNIPSTVDRIMCPDVPIALRMSGHLL 60
MFY+Q F +++G L +W AAH + ++ K+H ++ +T+ I+ P + I LR SGHLL
Sbjct: 1 MFYAQLFTSKRGTLAKIWLAAHWEKKITKAHVFECDLETTIKEILSPQIKIGLRTSGHLL 60
Query: 61 LGVVRIYSKKVDYLYHDCNVFLISLRKTFSTVSVNLPEDATHAPAHTVTLPQKF-NLDSV 119
LGVVRIYS+K YL DC+ L+ ++ F +LP+DA A T+TLP+ F + DS
Sbjct: 61 LGVVRIYSRKTRYLLADCSDALVKIKVAFRPGQTDLPDDAMEATLKTITLPEDFTDFDSQ 120
Query: 120 DLDDHTFD--DEYDNHSRSQEDITLTD 144
D +T D D + + EDITL +
Sbjct: 121 LPDLNTIDVVDHFSLNQCRTEDITLKE 147
>UNIPROTKB|F1NYD0 [details] [associations]
symbol:RAD21 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0034991 "nuclear meiotic
cohesin complex" evidence=IEA] [GO:0071168 "protein localization to
chromatin" evidence=IEA] InterPro:IPR006909 InterPro:IPR006910
Pfam:PF04824 Pfam:PF04825 GO:GO:0006357 GO:GO:0000228 GO:GO:0071168
GeneTree:ENSGT00390000011606 OMA:VPREEQQ Gene3D:1.10.10.580
InterPro:IPR023093 EMBL:AADN02022645 IPI:IPI00679990
Ensembl:ENSGALT00000025968 Uniprot:F1NYD0
Length = 633
Score = 295 (108.9 bits), Expect = 2.8e-25, P = 2.8e-25
Identities = 63/150 (42%), Positives = 92/150 (61%)
Query: 1 MFYSQTFLARKGPLGTVWCAAHLQHRLKKSHYTSTNIPSTVDRIMCPDVPIALRMSGHLL 60
MFY+ L+++GPL +W AAH +L K+H N+ S+V+ I+ P V +ALR SGHLL
Sbjct: 1 MFYAHFVLSKRGPLAKIWLAAHWDKKLTKAHVFECNLESSVESIISPKVKMALRTSGHLL 60
Query: 61 LGVVRIYSKKVDYLYHDCNVFLISLRKTFSTVSVNLPEDATHAPAHTVTLPQKFN-LDSV 119
LGVVRIY +K YL DCN I ++ F V+LPE+ A + +TLP++F+ D
Sbjct: 61 LGVVRIYHRKAKYLLADCNEAFIKIKMAFRPGVVDLPEENREAAYNAITLPEEFHDFDQP 120
Query: 120 --DLDDHTFDDEYD-NHSRSQEDITLTDQI 146
DLDD ++ N SR +E IT+ +++
Sbjct: 121 LPDLDDIDVAQQFSLNQSRVEE-ITMREEV 149
>RGD|1587557 [details] [associations]
symbol:Rad21l1 "RAD21-like 1 (S. pombe)" species:10116 "Rattus
norvegicus" [GO:0000228 "nuclear chromosome" evidence=IEA]
[GO:0000800 "lateral element" evidence=ISO] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005694 "chromosome" evidence=ISO] [GO:0006302
"double-strand break repair" evidence=ISO] [GO:0007129 "synapsis"
evidence=ISO] [GO:0007283 "spermatogenesis" evidence=ISO]
[GO:0030893 "meiotic cohesin complex" evidence=ISO] [GO:0070197
"attachment of telomeric heterochromatin to nuclear envelope"
evidence=ISO] InterPro:IPR006909 InterPro:IPR006910 Pfam:PF04824
Pfam:PF04825 RGD:1587557 GO:GO:0000228 GO:GO:0007128 GO:GO:0030893
GeneTree:ENSGT00390000011606 Gene3D:1.10.10.580 InterPro:IPR023093
OrthoDB:EOG49S67J IPI:IPI00763893 Ensembl:ENSRNOT00000055455
UCSC:RGD:1587557 Uniprot:D4ADQ7
Length = 550
Score = 292 (107.8 bits), Expect = 3.9e-25, P = 3.9e-25
Identities = 56/146 (38%), Positives = 90/146 (61%)
Query: 1 MFYSQTFLARKGPLGTVWCAAHLQHRLKKSHYTSTNIPSTVDRIMCPDVPIALRMSGHLL 60
MFY+ ++++GPL +W AAH + +L K+H N+ T+ +I+ P V IALR SGHLL
Sbjct: 1 MFYTHVLMSKRGPLAKIWLAAHWEKKLTKAHVFECNLEITIQKIISPKVKIALRTSGHLL 60
Query: 61 LGVVRIYSKKVDYLYHDCNVFLISLRKTFSTVSVNLPEDATHAPAHTVTLPQKFN-LDSV 119
LGVVRIY++K YL DC+ + ++ TF V+LP++ A +T+TLP++F+ D
Sbjct: 61 LGVVRIYNRKAKYLLADCSEAFLKMKMTFRPGLVDLPKENFEAAYNTITLPEEFHDFDIY 120
Query: 120 DLDDHTFDDEYDNHSRSQEDITLTDQ 145
+ +D + + E+ITL ++
Sbjct: 121 NTNDIDISEPLAQNQSRPEEITLREE 146
>MGI|MGI:3652039 [details] [associations]
symbol:Rad21l "RAD21-like (S. pombe)" species:10090 "Mus
musculus" [GO:0000228 "nuclear chromosome" evidence=IEA]
[GO:0000800 "lateral element" evidence=IDA] [GO:0003674
"molecular_function" evidence=ND] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005694 "chromosome" evidence=IDA] [GO:0006302
"double-strand break repair" evidence=IMP] [GO:0007059 "chromosome
segregation" evidence=IEA] [GO:0007126 "meiosis" evidence=IEA]
[GO:0007129 "synapsis" evidence=IMP] [GO:0007283 "spermatogenesis"
evidence=IMP] [GO:0030893 "meiotic cohesin complex" evidence=IDA]
[GO:0070197 "attachment of telomeric heterochromatin to nuclear
envelope" evidence=IMP] InterPro:IPR006909 InterPro:IPR006910
Pfam:PF04824 Pfam:PF04825 MGI:MGI:3652039 GO:GO:0007059
GO:GO:0007283 GO:GO:0006302 GO:GO:0000800 GO:GO:0007129
GO:GO:0007128 GO:GO:0070197 GO:GO:0030893
GeneTree:ENSGT00390000011606 HOGENOM:HOG000233800
HOVERGEN:HBG059956 Gene3D:1.10.10.580 InterPro:IPR023093
eggNOG:NOG301899 OMA:GMQSFSL OrthoDB:EOG49S67J EMBL:HQ603828
EMBL:AB602048 EMBL:AB574185 EMBL:AL928988 IPI:IPI00752563
RefSeq:NP_001108149.1 UniGene:Mm.473683 ProteinModelPortal:A2AU37
PhosphoSite:A2AU37 PRIDE:A2AU37 Ensembl:ENSMUST00000096439
Ensembl:ENSMUST00000180195 GeneID:668929 KEGG:mmu:668929
UCSC:uc012cfx.1 CTD:668929 InParanoid:A2AU37 NextBio:435965
Genevestigator:A2AU37 Uniprot:A2AU37
Length = 552
Score = 287 (106.1 bits), Expect = 1.4e-24, P = 1.4e-24
Identities = 54/146 (36%), Positives = 91/146 (62%)
Query: 1 MFYSQTFLARKGPLGTVWCAAHLQHRLKKSHYTSTNIPSTVDRIMCPDVPIALRMSGHLL 60
MFY+ ++++GPL +W AAH + +L K+H N+ T+ +I+ P V IALR SGHLL
Sbjct: 1 MFYTHVLMSKRGPLAKIWLAAHWEKKLTKAHVFECNLEITIQKIISPKVKIALRTSGHLL 60
Query: 61 LGVVRIYSKKVDYLYHDCNVFLISLRKTFSTVSVNLPEDATHAPAHTVTLPQKFN-LDSV 119
LGVVRIY++K YL DC+ + ++ TF V+LP++ A +T+TLP++F+ +
Sbjct: 61 LGVVRIYNRKAKYLLADCSEAFLKMKMTFRPGLVDLPKENFEAAYNTITLPEEFHDFEIY 120
Query: 120 DLDDHTFDDEYDNHSRSQEDITLTDQ 145
++++ + + E+ITL ++
Sbjct: 121 NINEIDISEPLAQNQSRPEEITLREE 146
>UNIPROTKB|E1BTU9 [details] [associations]
symbol:RAD21L1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000800 "lateral element" evidence=IEA]
[GO:0006302 "double-strand break repair" evidence=IEA] [GO:0007128
"meiotic prophase I" evidence=IEA] [GO:0007129 "synapsis"
evidence=IEA] [GO:0007283 "spermatogenesis" evidence=IEA]
[GO:0030893 "meiotic cohesin complex" evidence=IEA] [GO:0070197
"attachment of telomeric heterochromatin to nuclear envelope"
evidence=IEA] InterPro:IPR006909 InterPro:IPR006910 Pfam:PF04824
Pfam:PF04825 GO:GO:0000228 GO:GO:0007128 GO:GO:0030893
GeneTree:ENSGT00390000011606 Gene3D:1.10.10.580 InterPro:IPR023093
EMBL:AADN02019132 IPI:IPI00819464 Ensembl:ENSGALT00000039400
OMA:EITHVCI Uniprot:E1BTU9
Length = 630
Score = 282 (104.3 bits), Expect = 7.2e-24, P = 7.2e-24
Identities = 61/148 (41%), Positives = 89/148 (60%)
Query: 1 MFYSQTFLARKGPLGTVWCAAHLQHRLKKSHYTSTNIPSTVDRIMCPDVPIALRMSGHLL 60
MFY + R+GPL +W AAH + +L K+H N+ +T+ +I+ P IALR SGHLL
Sbjct: 1 MFYMHLLVNRRGPLAKIWLAAHWEKKLTKAHIFECNLEATIKKIVSPKFTIALRTSGHLL 60
Query: 61 LGVVRIYSKKVDYLYHDCNVFLISLRKTFSTVSVNLPEDATHAPAHTVTLPQKFNLDSVD 120
LGVVRIY +K YL DC+ L ++ F V+LPE++ A ++TLP++F+
Sbjct: 61 LGVVRIYHRKTKYLLSDCSEALTKMKTAFRPGLVDLPEESCEAAYQSITLPEEFHDFETT 120
Query: 121 LDD-HTFD--DEYD-NHSRSQEDITLTD 144
L D + D + + N SR+ EDITL +
Sbjct: 121 LPDLNAIDVAEHFTLNQSRA-EDITLKE 147
>UNIPROTKB|E5RJK5 [details] [associations]
symbol:RAD21 "Double-strand-break repair protein rad21
homolog" species:9606 "Homo sapiens" [GO:0034991 "nuclear meiotic
cohesin complex" evidence=IEA] InterPro:IPR006910 Pfam:PF04825
HGNC:HGNC:9811 ChiTaRS:RAD21 EMBL:AC087350 IPI:IPI00984166
Ensembl:ENST00000519837 ArrayExpress:E5RJK5 Bgee:E5RJK5
Uniprot:E5RJK5
Length = 124
Score = 272 (100.8 bits), Expect = 1.1e-23, P = 1.1e-23
Identities = 52/115 (45%), Positives = 74/115 (64%)
Query: 1 MFYSQTFLARKGPLGTVWCAAHLQHRLKKSHYTSTNIPSTVDRIMCPDVPIALRMSGHLL 60
MFY+ L+++GPL +W AAH +L K+H N+ S+V+ I+ P V +ALR SGHLL
Sbjct: 1 MFYAHFVLSKRGPLAKIWLAAHWDKKLTKAHVFECNLESSVESIISPKVKMALRTSGHLL 60
Query: 61 LGVVRIYSKKVDYLYHDCNVFLISLRKTFSTVSVNLPEDATHAPAHTVTLPQKFN 115
LGVVRIY +K YL DCN I ++ F V+LPE+ A + +TLP++F+
Sbjct: 61 LGVVRIYHRKAKYLLADCNEAFIKIKMAFRPGVVDLPEENREAAYNAITLPEEFH 115
>UNIPROTKB|E5RJW1 [details] [associations]
symbol:RAD21 "Double-strand-break repair protein rad21
homolog" species:9606 "Homo sapiens" [GO:0034991 "nuclear meiotic
cohesin complex" evidence=IEA] InterPro:IPR006910 Pfam:PF04825
HGNC:HGNC:9811 ChiTaRS:RAD21 EMBL:AC087350 IPI:IPI00981513
Ensembl:ENST00000522699 ArrayExpress:E5RJW1 Bgee:E5RJW1
Uniprot:E5RJW1
Length = 120
Score = 272 (100.8 bits), Expect = 1.1e-23, P = 1.1e-23
Identities = 52/115 (45%), Positives = 74/115 (64%)
Query: 1 MFYSQTFLARKGPLGTVWCAAHLQHRLKKSHYTSTNIPSTVDRIMCPDVPIALRMSGHLL 60
MFY+ L+++GPL +W AAH +L K+H N+ S+V+ I+ P V +ALR SGHLL
Sbjct: 1 MFYAHFVLSKRGPLAKIWLAAHWDKKLTKAHVFECNLESSVESIISPKVKMALRTSGHLL 60
Query: 61 LGVVRIYSKKVDYLYHDCNVFLISLRKTFSTVSVNLPEDATHAPAHTVTLPQKFN 115
LGVVRIY +K YL DCN I ++ F V+LPE+ A + +TLP++F+
Sbjct: 61 LGVVRIYHRKAKYLLADCNEAFIKIKMAFRPGVVDLPEENREAAYNAITLPEEFH 115
>ASPGD|ASPL0000069046 [details] [associations]
symbol:AN7465 species:162425 "Emericella nidulans"
[GO:0003674 "molecular_function" evidence=ND] [GO:0000228 "nuclear
chromosome" evidence=IEA] [GO:0000724 "double-strand break repair
via homologous recombination" evidence=IEA] [GO:0007064 "mitotic
sister chromatid cohesion" evidence=IEA] [GO:0008608 "attachment of
spindle microtubules to kinetochore" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0030892 "mitotic cohesin complex"
evidence=IEA] InterPro:IPR006909 InterPro:IPR006910 Pfam:PF04824
Pfam:PF04825 EMBL:AACD01000129 EMBL:BN001304 GO:GO:0000228
eggNOG:NOG249424 KO:K06670 Gene3D:1.10.10.580 InterPro:IPR023093
OrthoDB:EOG4C2MKJ RefSeq:XP_680734.1 ProteinModelPortal:Q5AW65
STRING:Q5AW65 EnsemblFungi:CADANIAT00000558 GeneID:2869516
KEGG:ani:AN7465.2 HOGENOM:HOG000162683 OMA:DATKMFF Uniprot:Q5AW65
Length = 584
Score = 242 (90.2 bits), Expect = 1.3e-21, Sum P(3) = 1.3e-21
Identities = 53/113 (46%), Positives = 72/113 (63%)
Query: 1 MFYSQTFLARKGPLGTVWCAAHLQHRLKKSHYTSTNIPSTVDRIMCP-DVPIALRMSGHL 59
MFYS+T L++ GPL VW +A+L+ +L KSH ++I S+V I+ P+ALR+SG L
Sbjct: 1 MFYSETLLSKTGPLARVWLSANLERKLSKSHILQSDIESSVSAIVDQGQAPMALRLSGQL 60
Query: 60 LLGVVRIYSKKVDYLYHDCNVFLISLRKTFSTVSVN-LPEDATHAPAHTVTLP 111
LLGVVRIYS+K YL DCN L+ ++ F + N L A AP +TLP
Sbjct: 61 LLGVVRIYSRKARYLLDDCNEALMKIKMAFRLTNNNDLTTSAVVAPGG-ITLP 112
Score = 53 (23.7 bits), Expect = 1.3e-21, Sum P(3) = 1.3e-21
Identities = 26/101 (25%), Positives = 38/101 (37%)
Query: 175 DSGVRQMQ-DILRAPP----SDADVGIQDPGPSNQTEVLNVTEDIQDPGASHQGELPTDS 229
DSG+ M D AP +A V + D G ++ L+ +I PG +D
Sbjct: 408 DSGISDMDVDAAAAPALEIEEEAIVPV-DEGVGMES-TLHQRSEIDFPGDEEDHLRLSDD 465
Query: 230 EGLQEPGPSNQTEVLGETVELQEPGPSNQTEVLRETVNFQE 270
EG Q+P + L G VLR+ + E
Sbjct: 466 EGAQQPLEDFDDTITPVDSALVSVGTKRAVHVLRDCLGNAE 506
Score = 50 (22.7 bits), Expect = 1.3e-21, Sum P(3) = 1.3e-21
Identities = 16/52 (30%), Positives = 22/52 (42%)
Query: 118 SVDLDDHTFDDEYDNHSRSQEDITLTD----QIPVGRDVYVAITFDEDIMMD 165
S+D F D S SQE L D Q+ +G D ++F D M+
Sbjct: 146 SMDFGSQLFPDTGLRRSASQEPALLEDPGDLQLNLGLDDETNLSFSHDFSME 197
Score = 42 (19.8 bits), Expect = 8.8e-21, Sum P(3) = 8.8e-21
Identities = 16/51 (31%), Positives = 21/51 (41%)
Query: 117 DSVDLDDHTFDDEYDNHSRSQEDITLTDQIPVGRDVYVAITFDEDIMMDST 167
D LD FD DN + L + + +G D VA DE +ST
Sbjct: 232 DDTPLDAVNFDANEDNF------LPLDEPMDLGDDTVVADGNDERFEREST 276
>WB|WBGene00004737 [details] [associations]
symbol:scc-1 species:6239 "Caenorhabditis elegans"
[GO:0000228 "nuclear chromosome" evidence=IEA] [GO:0000003
"reproduction" evidence=IMP] [GO:0009792 "embryo development ending
in birth or egg hatching" evidence=IMP] [GO:0045132 "meiotic
chromosome segregation" evidence=IMP] [GO:0040011 "locomotion"
evidence=IMP] [GO:0040035 "hermaphrodite genitalia development"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0040002 "collagen
and cuticulin-based cuticle development" evidence=IMP] [GO:0007126
"meiosis" evidence=IMP] [GO:0007130 "synaptonemal complex assembly"
evidence=TAS] [GO:0005634 "nucleus" evidence=IDA] [GO:0003684
"damaged DNA binding" evidence=ISS] [GO:0008278 "cohesin complex"
evidence=IPI] InterPro:IPR006909 InterPro:IPR006910 Pfam:PF04824
Pfam:PF04825 GO:GO:0005634 GO:GO:0009792 GO:GO:0040007
GO:GO:0002119 GO:GO:0003684 GO:GO:0040011 GO:GO:0040035
GO:GO:0045132 GO:GO:0040002 EMBL:FO081114 GO:GO:0000228
GO:GO:0007130 GO:GO:0008278 eggNOG:NOG249424
GeneTree:ENSGT00390000011606 Gene3D:1.10.10.580 InterPro:IPR023093
PIR:G88130 RefSeq:NP_494836.1 ProteinModelPortal:Q19325 SMR:Q19325
DIP:DIP-24317N IntAct:Q19325 MINT:MINT-226784 STRING:Q19325
PaxDb:Q19325 EnsemblMetazoa:F10G7.4 GeneID:173808
KEGG:cel:CELE_F10G7.4 UCSC:F10G7.4 CTD:173808 WormBase:F10G7.4
HOGENOM:HOG000017446 InParanoid:Q19325 NextBio:881199
Uniprot:Q19325
Length = 645
Score = 252 (93.8 bits), Expect = 3.3e-19, P = 3.3e-19
Identities = 61/165 (36%), Positives = 93/165 (56%)
Query: 1 MFYSQTFLARKGPLGTVWCAAHLQHRLKKSHYTSTNIPSTVDRIMCPDVPIALRMSGHLL 60
MFY+Q LA+KGPL VW AAH + +L K+ T++P ++ ++ P V +ALR GHLL
Sbjct: 1 MFYAQFVLAKKGPLAKVWLAAHWEKKLTKAQIFETDVPQAIEEVIRPKVKMALRTVGHLL 60
Query: 61 LGVVRIYSKKVDYLYHDCNV----FLISLRKTFSTVSVNLPEDATHAPAHTVTLPQKFNL 116
LG+VRIYSKK YL D N I+ R FS V++PE+A + + K+N+
Sbjct: 61 LGIVRIYSKKTRYLLADTNEAYQKMKINFRNGFS-FEVDIPENAEIEEDFSNFI-DKYNI 118
Query: 117 DSVDLDDHTFDDEY--DNHSRSQEDITLTDQIPVGRDVYVAITFD 159
+ D ++++ N SR +EDIT+ + + + + FD
Sbjct: 119 TVPEFHDADYNEQLIMANVSR-REDITMKETVNFNVEFNIDADFD 162
>UNIPROTKB|G4MR40 [details] [associations]
symbol:MGG_09891 "Double-strand-break repair protein rad21"
species:242507 "Magnaporthe oryzae 70-15" [GO:0003674
"molecular_function" evidence=ND] [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR006909 InterPro:IPR006910
Pfam:PF04824 Pfam:PF04825 EMBL:CM001231 GO:GO:0043581 GO:GO:0000228
KO:K06670 Gene3D:1.10.10.580 InterPro:IPR023093
RefSeq:XP_003709984.1 EnsemblFungi:MGG_09891T0 GeneID:2680935
KEGG:mgr:MGG_09891 Uniprot:G4MR40
Length = 625
Score = 244 (91.0 bits), Expect = 3.3e-18, P = 3.3e-18
Identities = 62/165 (37%), Positives = 91/165 (55%)
Query: 1 MFYSQTFLARKGPLGTVWCAAHLQHRLKKSHYTSTNIPSTVDRIMCP--DVPIALRMSGH 58
MFYS T L GPL VW AA+++ +L K+H +N+ +V++I+ P + P+ALR+SG
Sbjct: 1 MFYSDTLLRTTGPLSRVWLAANMERKLSKAHILQSNLRHSVEQIIQPSEEAPLALRLSGQ 60
Query: 59 LLLGVVRIYSKKVDYLYHDCNVFLISLRKTFSTVSVN-LPEDATHAPAHTVTLPQKFNLD 117
LLLGVVRIYS+K YL DCN L+ ++ F + N LP + H P + Q D
Sbjct: 61 LLLGVVRIYSRKARYLLEDCNEALMKIKMAFRSSGNNDLPTNL-HLPNRESLMLQ----D 115
Query: 118 SVDLDDHTFDDEYDNHSRSQEDITLTDQIP-VGRDVYVAITFDED 161
+ D+ DD + + +D+T + Q+ GR I ED
Sbjct: 116 RITPHDN-LDDLPPEPTLNFDDLTTSQQLGRKGRVSNREINLQED 159
>WB|WBGene00000591 [details] [associations]
symbol:coh-1 species:6239 "Caenorhabditis elegans"
[GO:0000228 "nuclear chromosome" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0045132 "meiotic chromosome segregation" evidence=IMP]
[GO:0040011 "locomotion" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0007126 "meiosis" evidence=IMP] [GO:0007130
"synaptonemal complex assembly" evidence=TAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0003684 "damaged DNA binding" evidence=ISS]
InterPro:IPR006909 InterPro:IPR006910 Pfam:PF04824 Pfam:PF04825
GO:GO:0005634 GO:GO:0009792 GO:GO:0040007 GO:GO:0002119
GO:GO:0003684 GO:GO:0040011 GO:GO:0045132 GO:GO:0000228
GO:GO:0007130 eggNOG:NOG249424 GeneTree:ENSGT00390000011606
KO:K06670 Gene3D:1.10.10.580 InterPro:IPR023093 EMBL:FO080256
PIR:T16582 RefSeq:NP_509262.1 ProteinModelPortal:Q21306 SMR:Q21306
STRING:Q21306 PaxDb:Q21306 EnsemblMetazoa:K08A8.3 GeneID:181003
KEGG:cel:CELE_K08A8.3 UCSC:K08A8.3 CTD:181003 WormBase:K08A8.3
HOGENOM:HOG000020951 InParanoid:Q21306 OMA:DIEQKEP NextBio:911936
Uniprot:Q21306
Length = 652
Score = 240 (89.5 bits), Expect = 1.1e-17, P = 1.1e-17
Identities = 57/152 (37%), Positives = 89/152 (58%)
Query: 1 MFYSQTFLARKGPLGTVWCAAHLQHRLKKSHYTSTNIPSTVDRIMCPDVPIALRMSGHLL 60
MFY+ L++KGPL VW AAH + +L K+ T++ V+ IM P +ALR +GHLL
Sbjct: 56 MFYADFVLSKKGPLSKVWLAAHWEKKLSKAQIFETDVDEAVNEIMQPSQKLALRTTGHLL 115
Query: 61 LGVVRIYSKKVDYLYHDCNVFLISLRKTFSTVSVNLPEDATHAPAHTVT-LPQKFNLDSV 119
LG+ R+YS+K YL DCN + ++ F + +++ P P ++ + F D+V
Sbjct: 116 LGICRVYSRKTKYLLADCNEAFLKIKLVFRSGALDQPNPVL--PTFSIQDIYGDFG-DNV 172
Query: 120 DLDDHTFDDEYDNHS---RSQ-EDITLTDQIP 147
L + FD+E NH+ +S+ +DITL + IP
Sbjct: 173 -LPE--FDEEELNHAPICQSRLDDITLKEDIP 201
>POMBASE|SPCC338.17c [details] [associations]
symbol:rad21 "mitotic cohesin complex, non-SMC subunit
Rad21 (kleisin)" species:4896 "Schizosaccharomyces pombe"
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=IGI] [GO:0000775 "chromosome, centromeric
region" evidence=IEA] [GO:0000794 "condensed nuclear chromosome"
evidence=IC] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0006302 "double-strand
break repair" evidence=IMP] [GO:0007064 "mitotic sister chromatid
cohesion" evidence=IMP] [GO:0008608 "attachment of spindle
microtubules to kinetochore" evidence=IMP] [GO:0030892 "mitotic
cohesin complex" evidence=IDA] InterPro:IPR006909
InterPro:IPR006910 Pfam:PF04824 Pfam:PF04825 PomBase:SPCC338.17c
GO:GO:0000775 GO:GO:0051301 EMBL:CU329672 GenomeReviews:CU329672_GR
GO:GO:0000724 GO:GO:0000794 GO:GO:0008608 GO:GO:0007064
GO:GO:0030892 eggNOG:NOG249424 KO:K06670 Gene3D:1.10.10.580
InterPro:IPR023093 EMBL:M96437 PIR:S35547 RefSeq:NP_588151.1
ProteinModelPortal:P30776 IntAct:P30776 STRING:P30776
EnsemblFungi:SPCC338.17c.1 GeneID:2539447 KEGG:spo:SPCC338.17c
OMA:VEACNTI OrthoDB:EOG4C2MKJ NextBio:20800609 PMAP-CutDB:P30776
Uniprot:P30776
Length = 628
Score = 229 (85.7 bits), Expect = 2.1e-16, P = 2.1e-16
Identities = 59/163 (36%), Positives = 87/163 (53%)
Query: 1 MFYSQTFLARKGPLGTVWCAAHLQHRLKKSHYTSTNIPSTVDRIMCPDV-PIALRMSGHL 59
MFYS+ L++KGPL VW AAH + +L K T+I +V I+ + P+ALR+SG L
Sbjct: 1 MFYSEAILSKKGPLAKVWLAAHWEKKLSKVQTLHTSIEQSVHAIVTEETAPMALRLSGQL 60
Query: 60 LLGVVRIYSKKVDYLYHDCNVFLISLRKTFSTVSVNLPEDATH----------APAHTVT 109
+LGVVRIYS+K YL DC L+ L+ +F V++ E AT + +T
Sbjct: 61 MLGVVRIYSRKARYLLEDCTEALMRLKMSFQPGQVDMIEPATALQSLKGKDAVTQSANLT 120
Query: 110 LPQKFNLDSVDLDDHTFDDEYDN----HSRSQEDITLTDQIPV 148
LP+ + + D TFD ++ SRS + L +P+
Sbjct: 121 LPETITEFDLLVPDSTFDFQWSQLLRTPSRSSNTLEL-HSLPI 162
>TAIR|locus:2169667 [details] [associations]
symbol:SYN1 "SYNAPTIC 1" species:3702 "Arabidopsis
thaliana" [GO:0000228 "nuclear chromosome" evidence=IEA]
[GO:0003674 "molecular_function" evidence=ND] [GO:0005634 "nucleus"
evidence=ISM] [GO:0007062 "sister chromatid cohesion"
evidence=RCA;IMP] [GO:0010032 "meiotic chromosome condensation"
evidence=IMP] [GO:0008278 "cohesin complex" evidence=ISS]
[GO:0005694 "chromosome" evidence=IDA] [GO:0006325 "chromatin
organization" evidence=IMP] [GO:0051455 "attachment of spindle
microtubules to kinetochore involved in homologous chromosome
segregation" evidence=IMP] [GO:0051754 "meiotic sister chromatid
cohesion, centromeric" evidence=IMP] [GO:0006302 "double-strand
break repair" evidence=RCA] [GO:0006312 "mitotic recombination"
evidence=RCA] [GO:0007129 "synapsis" evidence=RCA] [GO:0007131
"reciprocal meiotic recombination" evidence=RCA] [GO:0042138
"meiotic DNA double-strand break formation" evidence=RCA]
[GO:0045132 "meiotic chromosome segregation" evidence=RCA]
InterPro:IPR006909 InterPro:IPR006910 Pfam:PF04824 Pfam:PF04825
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0051754 EMBL:AB005241
GO:GO:0006325 GO:GO:0000228 GO:GO:0051455 GO:GO:0008278
GO:GO:0010032 KO:K06670 Gene3D:1.10.10.580 InterPro:IPR023093
EMBL:AF080620 EMBL:AF080619 EMBL:AJ238306 IPI:IPI00517990
IPI:IPI00540220 PIR:T52571 RefSeq:NP_196168.1 RefSeq:NP_850773.1
UniGene:At.48986 UniGene:At.690 ProteinModelPortal:Q9S7T7
SMR:Q9S7T7 STRING:Q9S7T7 PRIDE:Q9S7T7 EnsemblPlants:AT5G05490.1
GeneID:830432 KEGG:ath:AT5G05490 GeneFarm:1768 TAIR:At5g05490
eggNOG:NOG252146 HOGENOM:HOG000083970 InParanoid:Q9S7T7 OMA:RLSGILM
PhylomeDB:Q9S7T7 ProtClustDB:CLSN2686639 Genevestigator:Q9S7T7
Uniprot:Q9S7T7
Length = 627
Score = 215 (80.7 bits), Expect = 9.2e-15, P = 9.2e-15
Identities = 50/137 (36%), Positives = 73/137 (53%)
Query: 6 TFLARKGPLGTVWCAAHLQHRLKKSHYTSTNIPSTVDRIMCPDVPIALRMSGHLLLGVVR 65
T LARK PLG +W AA L ++ + +I + I+ P VP+ALR+SG L+ GVV
Sbjct: 16 TLLARKAPLGQIWMAATLHAKINRKKLDKLDIIQICEEILNPSVPMALRLSGILMGGVVI 75
Query: 66 IYSKKVDYLYHDCNVFLISLRKTFSTVSVN----LPEDATHAPAHTVTLPQKFNLDSVDL 121
+Y +KV L+ D N FL+ + + T SV LP+ THA VTLP+ D D
Sbjct: 76 VYERKVKLLFDDVNRFLVEINGAWRTKSVPDPTLLPKGKTHARKEAVTLPENEEADFGDF 135
Query: 122 DDHTFDDEYDNHSRSQE 138
+ ++ N+ Q+
Sbjct: 136 EQTRNVPKFGNYMDFQQ 152
>DICTYBASE|DDB_G0276977 [details] [associations]
symbol:rad21 "cohesin subunit" species:44689
"Dictyostelium discoideum" [GO:0000228 "nuclear chromosome"
evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR006909 InterPro:IPR006910 Pfam:PF04824 Pfam:PF04825
dictyBase:DDB_G0276977 EMBL:AAFI02000019 GO:GO:0000228
eggNOG:NOG249424 KO:K06670 Gene3D:1.10.10.580 InterPro:IPR023093
RefSeq:XP_642955.1 ProteinModelPortal:Q550H7 PRIDE:Q550H7
GeneID:8620824 KEGG:ddi:DDB_G0276977 InParanoid:Q550H7
Uniprot:Q550H7
Length = 821
Score = 213 (80.0 bits), Expect = 2.5e-14, P = 2.5e-14
Identities = 58/157 (36%), Positives = 80/157 (50%)
Query: 1 MFYSQTFLARKGPLGTVWCAAHLQHRLKKSHYTSTNIPSTV--------------DRIMC 46
MF+SQ LA++G LG +W A H +L K+ TNIP +V + I+
Sbjct: 1 MFFSQIVLAKRGALGKIWLAGHWDKKLAKNVVFKTNIPKSVKINKEINKKKKKKIETILN 60
Query: 47 PDVPIALRMSGHLLLGVVRIYSKKVDYLYHDCNVFLISLRKTFSTVS-VNLPEDATH--- 102
P P+ALRM+ HLLLGV RI+SKK YL DC +I L+ T+S ++LP + H
Sbjct: 61 PHSPMALRMTSHLLLGVARIFSKKAKYLLSDCTEAVIKLKGLSKTISKIDLPSEQDHQAL 120
Query: 103 ---APAHTVTLPQKFN-----LDSVDLDDHTFDDEYD 131
P T PQ + L ++D+ D D YD
Sbjct: 121 LTSGPRQT-DKPQVYQEVDRFLRNIDIRDLVVDPLYD 156
>CGD|CAL0000863 [details] [associations]
symbol:MCD1 species:5476 "Candida albicans" [GO:0034990
"nuclear mitotic cohesin complex" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0006302 "double-strand break
repair" evidence=IEA] [GO:0034087 "establishment of mitotic sister
chromatid cohesion" evidence=IEA] [GO:0006915 "apoptotic process"
evidence=IEA] [GO:0007076 "mitotic chromosome condensation"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
InterPro:IPR006909 InterPro:IPR006910 Pfam:PF04824 Pfam:PF04825
CGD:CAL0000863 EMBL:AACQ01000032 GO:GO:0000228 eggNOG:NOG249424
KO:K06670 Gene3D:1.10.10.580 InterPro:IPR023093 RefSeq:XP_719394.1
ProteinModelPortal:Q5ACK9 STRING:Q5ACK9 GeneID:3639044
KEGG:cal:CaO19.7634 Uniprot:Q5ACK9
Length = 564
Score = 134 (52.2 bits), Expect = 2.5e-09, Sum P(3) = 2.5e-09
Identities = 43/116 (37%), Positives = 60/116 (51%)
Query: 34 STNIPSTVDRIMCPDVPIALRMSGHLLLGVVRIYSKKVDYLYHDCNVFLISLRKTFSTVS 93
S +PS +D I LR+SG LLLG+VRIYS+K +YL D N L L+ +F S
Sbjct: 55 SQELPSDLDSTNT----ITLRLSGQLLLGIVRIYSRKTEYLLDDVNDILYKLKASFKLSS 110
Query: 94 -VNLPEDATHAPAHTVTLPQKF----NLDSVDLDDHTFDDEYDNHSRSQEDITLTD 144
VNL D ++ V LP++ NL+S+ L D Q+D+ L+D
Sbjct: 111 GVNLGSDNI---SNQVNLPREQTILQNLNSIILKDQVTSANL----LQQDDLDLSD 159
Score = 71 (30.1 bits), Expect = 2.5e-09, Sum P(3) = 2.5e-09
Identities = 13/39 (33%), Positives = 24/39 (61%)
Query: 6 TFLARKGPLGTVWCAAHLQHRLKKSHYTSTNIPSTVDRI 44
+ ++++GPLG VW AA+ +L K +T+I + + I
Sbjct: 5 SIISKQGPLGHVWLAANYDKKLTKQQLMNTSIVKSTEYI 43
Score = 44 (20.5 bits), Expect = 2.5e-09, Sum P(3) = 2.5e-09
Identities = 10/48 (20%), Positives = 26/48 (54%)
Query: 294 EVEVMRDTHHDFSAGDLSPLFLDVAKDITEPIVSSHQFSNEKEIQTPA 341
E+ ++ D H + + GD+ L + + + + ++ + NE++ Q P+
Sbjct: 237 EISIISDVHKERTTGDIFDL--NFGQPLDD--LNDDEAENEEDRQLPS 280
Score = 37 (18.1 bits), Expect = 1.3e-08, Sum P(3) = 1.3e-08
Identities = 17/73 (23%), Positives = 30/73 (41%)
Query: 265 TVNFQEPDLSNQTEVLHRSTDHTSPPKFPEVEVMRDTHHDFSAGDLSPLFLDVAKDITEP 324
TV F++ + +E+ HR+ P K P V ++ S + + F ++ T
Sbjct: 481 TVEFEKL-IETDSEIHHRN-----PDKLPLGVVSKNKDRINSRKEATKCFFELLVLATNN 534
Query: 325 IVSSHQFSNEKEI 337
+S Q E I
Sbjct: 535 CISLGQIPQETTI 547
>POMBASE|SPBC29A10.14 [details] [associations]
symbol:rec8 "meiotic cohesin complex subunit Rec8"
species:4896 "Schizosaccharomyces pombe" [GO:0000228 "nuclear
chromosome" evidence=IC] [GO:0000939 "condensed chromosome inner
kinetochore" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IDA] [GO:0007131
"reciprocal meiotic recombination" evidence=IMP] [GO:0008278
"cohesin complex" evidence=IDA] [GO:0030893 "meiotic cohesin
complex" evidence=IDA] [GO:0030999 "linear element assembly"
evidence=IMP] [GO:0042138 "meiotic DNA double-strand break
formation" evidence=IMP] [GO:0045143 "homologous chromosome
segregation" evidence=IDA] [GO:0045144 "meiotic sister chromatid
segregation" evidence=IDA;IMP] [GO:0051455 "attachment of spindle
microtubules to kinetochore involved in homologous chromosome
segregation" evidence=IMP] InterPro:IPR006909 InterPro:IPR006910
Pfam:PF04824 Pfam:PF04825 PomBase:SPBC29A10.14 EMBL:CU329671
GenomeReviews:CU329671_GR GO:GO:0007131 GO:GO:0000228 GO:GO:0042138
GO:GO:0051455 GO:GO:0045144 GO:GO:0000939 GO:GO:0030893
GO:GO:0030999 Gene3D:1.10.10.580 InterPro:IPR023093 EMBL:AJ223299
EMBL:AB018077 EMBL:M85298 PIR:T43428 RefSeq:NP_596059.1
ProteinModelPortal:P36626 IntAct:P36626 STRING:P36626
EnsemblFungi:SPBC29A10.14.1 GeneID:2540458 KEGG:spo:SPBC29A10.14
eggNOG:NOG42761 KO:K12780 OrthoDB:EOG45F0XT NextBio:20801585
Uniprot:P36626
Length = 561
Score = 140 (54.3 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 47/169 (27%), Positives = 84/169 (49%)
Query: 1 MFYSQTFLAR-KGPLGTVWCAAHL--QHRLKKSH---YTSTNIPSTVDRIMCPDVPIALR 54
MFY+Q L + KG +G +W AA L +H L+K H S +I D + P+ALR
Sbjct: 1 MFYNQDVLTKEKGGMGVIWLAATLGSKHSLRKLHKKDIMSVDIDEACDFVAFSPEPLALR 60
Query: 55 MSGHLLLGVVRIYSKKVDYLYHDCNVFLISLRKT---FSTV---SVNLPEDATHA----- 103
+S +L++GV R+++ + + + + + +RK F++ ++++ + T+
Sbjct: 61 LSSNLMIGVTRVWAHQYSFFHSQVSTLHLRVRKELDHFTSKPFKNIDIQNEQTNPKQLLL 120
Query: 104 ---PAHT--VTLPQKFNLDSVDLDDHTFDDEYDNHSRSQEDITLTDQIP 147
PA V+L FNL SVDL H D + +I++ + +P
Sbjct: 121 AEDPAFIPEVSLYDAFNLPSVDL--HV-DMSSFTQPKENPNISVLETLP 166
>ASPGD|ASPL0000077407 [details] [associations]
symbol:AN11113 species:162425 "Emericella nidulans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0000939 "condensed
chromosome inner kinetochore" evidence=IEA] [GO:0030893 "meiotic
cohesin complex" evidence=IEA] [GO:0003674 "molecular_function"
evidence=ND] [GO:0045144 "meiotic sister chromatid segregation"
evidence=IEA] [GO:0030999 "linear element assembly" evidence=IEA]
[GO:0007131 "reciprocal meiotic recombination" evidence=IEA]
[GO:0042138 "meiotic DNA double-strand break formation"
evidence=IEA] [GO:0051455 "attachment of spindle microtubules to
kinetochore involved in homologous chromosome segregation"
evidence=IEA] InterPro:IPR006910 Pfam:PF04825 EMBL:BN001303
EnsemblFungi:CADANIAT00006294 OMA:GKARPEQ Uniprot:C8V9S2
Length = 737
Score = 125 (49.1 bits), Expect = 0.00014, P = 0.00014
Identities = 62/244 (25%), Positives = 100/244 (40%)
Query: 14 LGTVWCAAHL-----QHRLKKSHYTSTNIPSTVDRIMCPDVPIALRMSGHLLLGVVRIYS 68
+ TVW A L RL + + ++P + I+ P P+ALR+ +LL G+ R+YS
Sbjct: 83 VATVWLVATLGARSISRRLNRRTIQNVDVPKACNVIIDPAAPMALRLQSNLLYGISRVYS 142
Query: 69 KKVDYLYHDCNVFLISLRKTFSTVSVN-LPEDATHAPAHTVTLPQ--KF----NLDSVDL 121
++ Y D +R+T +V L A A + LP F NL + L
Sbjct: 143 QQCGYTLLDVQAMHDKMRQTLRSVPAGGLDPSAGKARPEQLVLPYDPSFLPENNLPGLGL 202
Query: 122 DDHTFDDEYDNHSRSQEDITLTDQIPVGRDVYVAITFDEDIMMDSTHPPEDVPDSGVRQM 181
D + + S Q +++ IP D+ + + ++ + P D ++ +R M
Sbjct: 203 DLSKLNRLLETESSQQSNVS----IPRTPDLSQSALSNSSVL--GLNIPSD--ENILRDM 254
Query: 182 QDILRAPPSDADVGIQDPGPSNQTEVLNVTEDIQDPGASH-QGELPTDSEG-LQEPGPSN 239
S+ADV G + VL T + D G Q + D G + E G
Sbjct: 255 GGF----SSEADVASSAKGGLDFGRVL--TSSLHDEGGVLLQPDFEFDENGNIVELGGRT 308
Query: 240 QTEV 243
Q EV
Sbjct: 309 QNEV 312
>UNIPROTKB|F1PE29 [details] [associations]
symbol:SHROOM3 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0000902 "cell morphogenesis"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR014799 Pfam:PF08687 PROSITE:PS51307 GO:GO:0005737
GO:GO:0000902 InterPro:IPR014800 Pfam:PF08688 PROSITE:PS51306
GeneTree:ENSGT00530000063061 OMA:RNSIKDA EMBL:AAEX03016683
Ensembl:ENSCAFT00000013733 Uniprot:F1PE29
Length = 1834
Score = 127 (49.8 bits), Expect = 0.00025, P = 0.00025
Identities = 51/193 (26%), Positives = 82/193 (42%)
Query: 105 AHTV---TLPQ-KFNLDSVDLDDHTFDDEYDNHSRSQEDITL-TDQIPVGRDVYVAITFD 159
AHTV +LP+ + + +L + + + S + ED L T P GR +++
Sbjct: 1273 AHTVREDSLPEGSSSPEFANLKHYKTQQAHSSSSSTLEDTPLGTPSTP-GR---ISLRIS 1328
Query: 160 EDIMMDSTHPPEDVPDSGVRQMQDILRAPPSDADVGIQDPGPS--NQTEVLNVTEDIQDP 217
E ++ S P ED D ++D+ S + + P P +Q +N ++D P
Sbjct: 1329 ESVLQASLPPREDYDDEVF--VKDLYPNATSSLTLELPPPPPPPLSQDTPVNSSDDFPPP 1386
Query: 218 GASHQGELPTDSEGLQEPGPSNQTEVLGETVELQEPGPSNQTEVLRETVNFQEPDLSNQT 277
E DSE +EP S+ ++V TV + P P + Q P +QT
Sbjct: 1387 PPQAMYEAELDSEDYKEPHTSSSSKVAKVTVAKERPIPG-----IVHLAGSQTPASRSQT 1441
Query: 278 EVLHRSTDHTSPP 290
V T+ TSPP
Sbjct: 1442 SVRDSETNETSPP 1454
>UNIPROTKB|G5EHS1 [details] [associations]
symbol:MGCH7_ch7g423 "Uncharacterized protein"
species:242507 "Magnaporthe oryzae 70-15" [GO:0003674
"molecular_function" evidence=ND] InterPro:IPR006909
InterPro:IPR006910 Pfam:PF04824 Pfam:PF04825 EMBL:CM000230
EMBL:CM001237 GO:GO:0000228 Gene3D:1.10.10.580 InterPro:IPR023093
RefSeq:XP_003721082.1 EnsemblFungi:MGG_02688T0 GeneID:2682695
KEGG:mgr:MGG_02688 Uniprot:G5EHS1
Length = 712
Score = 121 (47.7 bits), Expect = 0.00037, P = 0.00037
Identities = 68/275 (24%), Positives = 107/275 (38%)
Query: 1 MFYSQTFL-ARKGPLGTVWCAAHLQH-----RLKKSHYTSTNIPS---TVDRIMCPDVPI 51
MFYS L ++K + TVW A L ++ + N+P T+D P PI
Sbjct: 1 MFYSHEILTSQKHGVATVWVLATLDRSCASRKVSRKAIQEVNVPKACVTIDEP--PGAPI 58
Query: 52 ALRMSGHLLLGVVRIYSKKVDYLYHDCNVFLISLRKTFSTV-SVNLPEDATHAPAHTVTL 110
ALR+ LL GV R+Y ++ Y+ D F IS+R + S L +A A + +
Sbjct: 59 ALRLQASLLYGVSRVYQQQCHYVLGDAEKFRISMRGLMRVLDSGTLDPNAGRAKKKQLMI 118
Query: 111 ---PQK-----FNLDSVDLDD------HTFDDEYDNHSRSQEDITLTDQIPVGRDVYVAI 156
P+ F+L +DLD+ F+ ++ + + GR+ +A+
Sbjct: 119 QDDPEFHISNFFDLPPLDLDELGNLRPTAFESQFTGKYSQLSPFSSQQRSSSGRNS-LAM 177
Query: 157 TFDEDIMMDSTHPPEDVPDSGVRQMQDILRAPPSDADVGIQDPGPSNQTEVLNVTEDIQD 216
F S P+ P G Q P AD+ QD P + E + I
Sbjct: 178 DFGAASFFGSQFGPD--PFGGDSSAQK----PHPGADMFAQDELPL-RLEDFDAGFTIDA 230
Query: 217 PGASHQGELPTDSEG---------LQEPGPSNQTE 242
G H+ P + L PGP + ++
Sbjct: 231 DGNIHEHPEPEQPQAAVPIAAHHMLDHPGPQHHSD 265
>SGD|S000002161 [details] [associations]
symbol:MCD1 "Essential alpha-kleisin subunit of the cohesin
complex" species:4932 "Saccharomyces cerevisiae" [GO:0005694
"chromosome" evidence=IEA] [GO:0034087 "establishment of mitotic
sister chromatid cohesion" evidence=IMP] [GO:0000775 "chromosome,
centromeric region" evidence=IEA] [GO:0007076 "mitotic chromosome
condensation" evidence=IMP] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0006974 "response to DNA damage stimulus" evidence=IMP]
[GO:0007059 "chromosome segregation" evidence=IEA] [GO:0000228
"nuclear chromosome" evidence=IEA] [GO:0006915 "apoptotic process"
evidence=IMP] [GO:0005739 "mitochondrion" evidence=IDA] [GO:0000794
"condensed nuclear chromosome" evidence=IDA] [GO:0003682 "chromatin
binding" evidence=IDA] [GO:0006302 "double-strand break repair"
evidence=IMP] [GO:0051301 "cell division" evidence=IEA] [GO:0007067
"mitosis" evidence=IEA] [GO:0007049 "cell cycle" evidence=IEA]
[GO:0034990 "nuclear mitotic cohesin complex" evidence=IDA]
InterPro:IPR006909 InterPro:IPR006910 Pfam:PF04824 Pfam:PF04825
SGD:S000002161 GO:GO:0005739 GO:GO:0006915 GO:GO:0000775
GO:GO:0051301 EMBL:BK006938 GO:GO:0003682 GO:GO:0006302
GO:GO:0034087 GO:GO:0007076 EMBL:Z48432 GO:GO:0006473 EMBL:Z48008
eggNOG:NOG249424 KO:K06670 Gene3D:1.10.10.580 InterPro:IPR023093
OrthoDB:EOG4C2MKJ EMBL:Y14280 EMBL:U23759 EMBL:Z74051 PIR:S50979
RefSeq:NP_010281.1 PDB:1W1W PDBsum:1W1W ProteinModelPortal:Q12158
SMR:Q12158 DIP:DIP-5812N IntAct:Q12158 MINT:MINT-627334
STRING:Q12158 PaxDb:Q12158 PeptideAtlas:Q12158 EnsemblFungi:YDL003W
GeneID:851561 KEGG:sce:YDL003W CYGD:YDL003w HOGENOM:HOG000141751
EvolutionaryTrace:Q12158 NextBio:968995 PMAP-CutDB:Q12158
Genevestigator:Q12158 GermOnline:YDL003W GO:GO:0034990
Uniprot:Q12158
Length = 566
Score = 107 (42.7 bits), Expect = 0.00096, Sum P(2) = 0.00096
Identities = 29/90 (32%), Positives = 43/90 (47%)
Query: 11 KGPLGTVWCAAHLQHRLKKSHYTSTNIPSTVDRIM----CPDVP-----IALRMSGHLLL 61
KGPL +W A+++ + + + T+I + I C D I LR SG LL
Sbjct: 18 KGPLAQIWLASNMSN-IPRGSVIQTHIAESAKEIAKASGCDDESGDNEYITLRTSGELLQ 76
Query: 62 GVVRIYSKKVDYLYHDCNVFLISLRKTFST 91
G+VR+YSK+ +L D L + F T
Sbjct: 77 GIVRVYSKQATFLLTDIKDTLTKISMLFKT 106
Score = 52 (23.4 bits), Expect = 0.00096, Sum P(2) = 0.00096
Identities = 20/91 (21%), Positives = 38/91 (41%)
Query: 193 DVGIQDPGPSNQTEVLNVTEDIQDPGASHQGELPTD---SEGLQEPGPSNQTEVLGETVE 249
D+GI + N + N E + G S E PTD +++ P+ + + + +
Sbjct: 246 DLGITEKNDQNNDDDDNSVEQGRRLGESIMSEEPTDFGFDLDIEKEAPAGNIDTITDAMT 305
Query: 250 LQEPGPSNQTEVLRET--VNFQEPDLSNQTE 278
+P QT R + +N + + +TE
Sbjct: 306 ESQP---KQTGTRRNSKLLNTKSIQIDEETE 333
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.314 0.132 0.389 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 367 367 0.00084 117 3 11 23 0.45 34
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 42
No. of states in DFA: 607 (65 KB)
Total size of DFA: 232 KB (2125 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 39.57u 0.17s 39.74t Elapsed: 00:00:02
Total cpu time: 39.58u 0.17s 39.75t Elapsed: 00:00:02
Start: Tue May 21 00:25:06 2013 End: Tue May 21 00:25:08 2013