BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017686
(367 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FQ19|SCC13_ARATH Sister chromatid cohesion 1 protein 3 OS=Arabidopsis thaliana
GN=SYN3 PE=2 SV=2
Length = 693
Score = 264 bits (675), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 162/355 (45%), Positives = 195/355 (54%), Gaps = 50/355 (14%)
Query: 1 MFYSQTFLARKGPLGTVWCAAHLQHRLKKSHYTSTNIPSTVDRIMCPDVPIALRMSGHLL 60
MFYS T LARKGPLGTVWCAAH+ RLKKS YTS NIP TVD IM P+VP+ALR S HLL
Sbjct: 1 MFYSHTLLARKGPLGTVWCAAHVHQRLKKSQYTSINIPDTVDNIMFPEVPLALRTSSHLL 60
Query: 61 LGVVRIYSKKVDYLYHDCNVFLISLRKTFSTVSVNLPEDATHAPAHTVTLPQKFNLDSVD 120
+GVVRIYSKKVDYLY+D N+ + K F + VNLPEDA AP +VTLPQ NLD D
Sbjct: 61 VGVVRIYSKKVDYLYNDWNLLNTWVAKAFVSTQVNLPEDARQAPPESVTLPQALNLDEFD 120
Query: 121 LDDHTFDDEYDNHSRSQEDITLTDQIPVGRDVYVAITFDEDIMMDSTHPPEDVPDSGVRQ 180
L+D T D E+DNH+RS+EDITLTDQIP G D YVA+TFDEDI+ +S
Sbjct: 121 LEDDTLDMEFDNHTRSEEDITLTDQIPTGIDPYVAVTFDEDIISESI------------- 167
Query: 181 MQDILRAPPSDADVGIQDPGPSNQTEVLNVTEDIQDPGASHQGELPTDSEGLQEPGPSNQ 240
P D D + P + H GE+ D E E GP N+
Sbjct: 168 --------PMDVDQSTE-------------------PVSRHTGEI--DVETAHETGPDNE 198
Query: 241 TEVLGETVELQEPGPSNQTEVLRETVNFQEPDLSNQTEVL---HRSTDHTSPPKFPEVEV 297
+ P N TE E Q+P SN TE D TSP PE+E
Sbjct: 199 PRDSNIAFDTGTYSPRNVTE---EFTEVQDPRQSNLTEERIPNSERNDATSPGTVPEIER 255
Query: 298 MRDTHHDFSAGDLSPLFLDVAKDI-TEPIVSSHQFSNEKEIQTPALEDLLASRGQ 351
MRD HD S P F +D+ E S + NEKE P++++ + + G+
Sbjct: 256 MRDAAHDLSPTS-HPSFAAQQQDVRVERTESLDETLNEKEPTIPSIDEEMLNSGR 309
>sp|O93310|RAD21_XENLA Double-strand-break repair protein rad21 homolog OS=Xenopus laevis
GN=rad21 PE=1 SV=1
Length = 629
Score = 128 bits (322), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 61/149 (40%), Positives = 91/149 (61%), Gaps = 3/149 (2%)
Query: 1 MFYSQTFLARKGPLGTVWCAAHLQHRLKKSHYTSTNIPSTVDRIMCPDVPIALRMSGHLL 60
MFY+ L+++GPL +W AAH +L K+H N+ S+V+ I+CP V +ALR SGHLL
Sbjct: 1 MFYAHFVLSKRGPLAKIWLAAHWDKKLTKAHVFECNLESSVESIICPKVKMALRTSGHLL 60
Query: 61 LGVVRIYSKKVDYLYHDCNVFLISLRKTFSTVSVNLPEDATHAPAHTVTLPQKF-NLDS- 118
LGVVRIY +K YL DCN I ++ F V+LPE+ A + +TLP++F + D
Sbjct: 61 LGVVRIYHRKAKYLLADCNEAFIKIKMAFRPGVVDLPEENREAAYNAITLPEEFHDFDQP 120
Query: 119 -VDLDDHTFDDEYDNHSRSQEDITLTDQI 146
DLDD ++ + E+IT+ +++
Sbjct: 121 LPDLDDIDVAQQFSLNQSRVEEITMREEV 149
>sp|Q9H4I0|RD21L_HUMAN Double-strand-break repair protein rad21-like protein 1 OS=Homo
sapiens GN=RAD21L1 PE=2 SV=3
Length = 556
Score = 127 bits (318), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 62/186 (33%), Positives = 107/186 (57%), Gaps = 21/186 (11%)
Query: 1 MFYSQTFLARKGPLGTVWCAAHLQHRLKKSHYTSTNIPSTVDRIMCPDVPIALRMSGHLL 60
MFY+ ++++GPL +W AAH + +L K+H N+ T+++I+ P V IALR SGHLL
Sbjct: 1 MFYTHVLMSKRGPLAKIWLAAHWEKKLTKAHVFECNLEITIEKILSPKVKIALRTSGHLL 60
Query: 61 LGVVRIYSKKVDYLYHDCNVFLISLRKTFSTVSVNLPEDATHAPAHTVTLPQKF------ 114
LGVVRIY++K YL DC+ + ++ TF V+LP++ A + +TLP++F
Sbjct: 61 LGVVRIYNRKAKYLLADCSEAFLKMKMTFCPGLVDLPKENFEASYNAITLPEEFHDFDTQ 120
Query: 115 NLDSVDLDDH-----------TFDDEYDNHSRSQEDITLTDQIPVGRDVYVAITFDEDIM 163
N++++D+ +H T + +DN Q + + + R + FD++I+
Sbjct: 121 NMNAIDVSEHFTQNQSRPEEITLRENFDNDLIFQAESFGEESEILRRHSF----FDDNIL 176
Query: 164 MDSTHP 169
++S+ P
Sbjct: 177 LNSSGP 182
>sp|D2HSB3|RD21L_AILME Double-strand-break repair protein rad21-like protein 1
OS=Ailuropoda melanoleuca GN=RAD21L1 PE=3 SV=1
Length = 554
Score = 126 bits (317), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 63/187 (33%), Positives = 107/187 (57%), Gaps = 23/187 (12%)
Query: 1 MFYSQTFLARKGPLGTVWCAAHLQHRLKKSHYTSTNIPSTVDRIMCPDVPIALRMSGHLL 60
MFY+ ++++GPL +W AAH + +L K+H N+ T+++I+ V IALR SGHLL
Sbjct: 1 MFYTHVLMSKRGPLAKIWLAAHWEKKLTKAHVFECNLEITIEKILSSKVKIALRTSGHLL 60
Query: 61 LGVVRIYSKKVDYLYHDCNVFLISLRKTFSTVSVNLPEDATHAPAHTVTLPQKF------ 114
LGVVRIY++K YL DCN L+ ++ TF V+LP++ A + +TLP++F
Sbjct: 61 LGVVRIYNRKAKYLLADCNEALLKMKMTFRPGLVDLPKENFEAAYNAITLPEEFHDFDTQ 120
Query: 115 NLDSVDLDDHTFDDEYDNHSRSQEDITLTDQI---------PVGRDVYVAIT---FDEDI 162
N++++D+ +H + + E+ITL + G + + FD++I
Sbjct: 121 NVNAIDVSEH-----FTQNQSKPEEITLREDYSNDLLFQAGSFGEETEILRRHSFFDDNI 175
Query: 163 MMDSTHP 169
+++S+ P
Sbjct: 176 LLNSSGP 182
>sp|Q61550|RAD21_MOUSE Double-strand-break repair protein rad21 homolog OS=Mus musculus
GN=Rad21 PE=1 SV=3
Length = 635
Score = 124 bits (312), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 60/149 (40%), Positives = 90/149 (60%), Gaps = 3/149 (2%)
Query: 1 MFYSQTFLARKGPLGTVWCAAHLQHRLKKSHYTSTNIPSTVDRIMCPDVPIALRMSGHLL 60
MFY+ L+++GPL +W AAH +L K+H N+ S+V+ I+ P V +ALR SGHLL
Sbjct: 1 MFYAHFVLSKRGPLAKIWLAAHWDKKLTKAHVFECNLESSVESIISPKVKMALRTSGHLL 60
Query: 61 LGVVRIYSKKVDYLYHDCNVFLISLRKTFSTVSVNLPEDATHAPAHTVTLPQKF-NLDS- 118
LGVVRIY +K YL DCN I ++ F V+LPE+ A + +TLP++F + D
Sbjct: 61 LGVVRIYHRKAKYLLADCNEAFIKIKMAFRPGVVDLPEENREAAYNAITLPEEFHDFDQP 120
Query: 119 -VDLDDHTFDDEYDNHSRSQEDITLTDQI 146
DLDD ++ + E+IT+ +++
Sbjct: 121 LPDLDDIDVAQQFSLNQSRVEEITMREEV 149
>sp|Q3SWX9|RAD21_BOVIN Double-strand-break repair protein rad21 homolog OS=Bos taurus
GN=RAD21 PE=2 SV=1
Length = 630
Score = 124 bits (312), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 60/149 (40%), Positives = 90/149 (60%), Gaps = 3/149 (2%)
Query: 1 MFYSQTFLARKGPLGTVWCAAHLQHRLKKSHYTSTNIPSTVDRIMCPDVPIALRMSGHLL 60
MFY+ L+++GPL +W AAH +L K+H N+ S+V+ I+ P V +ALR SGHLL
Sbjct: 1 MFYAHFVLSKRGPLAKIWLAAHWDKKLTKAHVFECNLESSVESIISPKVKMALRTSGHLL 60
Query: 61 LGVVRIYSKKVDYLYHDCNVFLISLRKTFSTVSVNLPEDATHAPAHTVTLPQKF-NLDS- 118
LGVVRIY +K YL DCN I ++ F V+LPE+ A + +TLP++F + D
Sbjct: 61 LGVVRIYHRKAKYLLADCNEAFIKIKMAFRPGVVDLPEENREAAYNAITLPEEFHDFDQP 120
Query: 119 -VDLDDHTFDDEYDNHSRSQEDITLTDQI 146
DLDD ++ + E+IT+ +++
Sbjct: 121 LPDLDDIDVAQQFSLNQSRVEEITMREEV 149
>sp|O60216|RAD21_HUMAN Double-strand-break repair protein rad21 homolog OS=Homo sapiens
GN=RAD21 PE=1 SV=2
Length = 631
Score = 124 bits (312), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 60/149 (40%), Positives = 90/149 (60%), Gaps = 3/149 (2%)
Query: 1 MFYSQTFLARKGPLGTVWCAAHLQHRLKKSHYTSTNIPSTVDRIMCPDVPIALRMSGHLL 60
MFY+ L+++GPL +W AAH +L K+H N+ S+V+ I+ P V +ALR SGHLL
Sbjct: 1 MFYAHFVLSKRGPLAKIWLAAHWDKKLTKAHVFECNLESSVESIISPKVKMALRTSGHLL 60
Query: 61 LGVVRIYSKKVDYLYHDCNVFLISLRKTFSTVSVNLPEDATHAPAHTVTLPQKF-NLDS- 118
LGVVRIY +K YL DCN I ++ F V+LPE+ A + +TLP++F + D
Sbjct: 61 LGVVRIYHRKAKYLLADCNEAFIKIKMAFRPGVVDLPEENREAAYNAITLPEEFHDFDQP 120
Query: 119 -VDLDDHTFDDEYDNHSRSQEDITLTDQI 146
DLDD ++ + E+IT+ +++
Sbjct: 121 LPDLDDIDVAQQFSLNQSRVEEITMREEV 149
>sp|Q9FQ20|SCC12_ARATH Sister chromatid cohesion 1 protein 2 OS=Arabidopsis thaliana
GN=SYN2 PE=2 SV=2
Length = 810
Score = 124 bits (310), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 71/173 (41%), Positives = 102/173 (58%), Gaps = 12/173 (6%)
Query: 1 MFYSQTFLARKGPLGTVWCAAHLQHRLKKSHYTSTNIPSTVDRIMCPDV-PIALRMSGHL 59
MFYS ++RKGPLG +W AA+ +LKKS +T+IPS+VD+I+ ++ + R+ +L
Sbjct: 1 MFYSHCLVSRKGPLGAIWVAAYFFKKLKKSQVKATHIPSSVDQILQKELDALTYRVLAYL 60
Query: 60 LLGVVRIYSKKVDYLYHDCNVFLISLRKTFSTVSVNLPEDATHAPA----HTVTLPQKFN 115
LLGVVRIYSKKVD+L+ DCN LI + K F N + PA ++ LP++F
Sbjct: 61 LLGVVRIYSKKVDFLFDDCNKALIGV-KEFVAKERNREKTGVSLPASIECFSIALPERFE 119
Query: 116 LDSVDLDDHTFDDEYDNHSRSQEDITLTD--QIPVGRDVYVAITFD--EDIMM 164
LD+ DL +D + + + EDITL D Q D+Y FD ED++
Sbjct: 120 LDAFDLG--VLEDFHGGNVKPHEDITLKDGSQETERMDMYSMERFDMEEDLLF 170
>sp|A2AU37|RD21L_MOUSE Double-strand-break repair protein rad21-like protein 1 OS=Mus
musculus GN=Rad21l1 PE=1 SV=2
Length = 552
Score = 123 bits (308), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 64/184 (34%), Positives = 105/184 (57%), Gaps = 21/184 (11%)
Query: 1 MFYSQTFLARKGPLGTVWCAAHLQHRLKKSHYTSTNIPSTVDRIMCPDVPIALRMSGHLL 60
MFY+ ++++GPL +W AAH + +L K+H N+ T+ +I+ P V IALR SGHLL
Sbjct: 1 MFYTHVLMSKRGPLAKIWLAAHWEKKLTKAHVFECNLEITIQKIISPKVKIALRTSGHLL 60
Query: 61 LGVVRIYSKKVDYLYHDCNVFLISLRKTFSTVSVNLPEDATHAPAHTVTLPQKF------ 114
LGVVRIY++K YL DC+ + ++ TF V+LP++ A +T+TLP++F
Sbjct: 61 LGVVRIYNRKAKYLLADCSEAFLKMKMTFRPGLVDLPKENFEAAYNTITLPEEFHDFEIY 120
Query: 115 NLDSVDL-----------DDHTFDDEYDNHSRSQEDITLTDQIPVGRDVYVAITFDEDIM 163
N++ +D+ ++ T +EY N Q + D+ + R FD++I+
Sbjct: 121 NINEIDISEPLAQNQSRPEEITLREEYSNDLLFQAG-SFGDEPEILRRHSF---FDDNIL 176
Query: 164 MDST 167
M+S+
Sbjct: 177 MNSS 180
>sp|P30776|RAD21_SCHPO Cohesin subunit rad21 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=rad21 PE=1 SV=1
Length = 628
Score = 103 bits (257), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 55/147 (37%), Positives = 81/147 (55%), Gaps = 11/147 (7%)
Query: 1 MFYSQTFLARKGPLGTVWCAAHLQHRLKKSHYTSTNIPSTVDRIMCPD-VPIALRMSGHL 59
MFYS+ L++KGPL VW AAH + +L K T+I +V I+ + P+ALR+SG L
Sbjct: 1 MFYSEAILSKKGPLAKVWLAAHWEKKLSKVQTLHTSIEQSVHAIVTEETAPMALRLSGQL 60
Query: 60 LLGVVRIYSKKVDYLYHDCNVFLISLRKTFSTVSVNLPEDATH----------APAHTVT 109
+LGVVRIYS+K YL DC L+ L+ +F V++ E AT + +T
Sbjct: 61 MLGVVRIYSRKARYLLEDCTEALMRLKMSFQPGQVDMIEPATALQSLKGKDAVTQSANLT 120
Query: 110 LPQKFNLDSVDLDDHTFDDEYDNHSRS 136
LP+ + + D TFD ++ R+
Sbjct: 121 LPETITEFDLLVPDSTFDFQWSQLLRT 147
>sp|Q9S7T7|SCC11_ARATH Sister chromatid cohesion 1 protein 1 OS=Arabidopsis thaliana
GN=SYN1 PE=2 SV=2
Length = 627
Score = 94.4 bits (233), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 48/121 (39%), Positives = 67/121 (55%), Gaps = 4/121 (3%)
Query: 6 TFLARKGPLGTVWCAAHLQHRLKKSHYTSTNIPSTVDRIMCPDVPIALRMSGHLLLGVVR 65
T LARK PLG +W AA L ++ + +I + I+ P VP+ALR+SG L+ GVV
Sbjct: 16 TLLARKAPLGQIWMAATLHAKINRKKLDKLDIIQICEEILNPSVPMALRLSGILMGGVVI 75
Query: 66 IYSKKVDYLYHDCNVFLISLRKTFSTVSVN----LPEDATHAPAHTVTLPQKFNLDSVDL 121
+Y +KV L+ D N FL+ + + T SV LP+ THA VTLP+ D D
Sbjct: 76 VYERKVKLLFDDVNRFLVEINGAWRTKSVPDPTLLPKGKTHARKEAVTLPENEEADFGDF 135
Query: 122 D 122
+
Sbjct: 136 E 136
>sp|P36626|REC8_SCHPO Meiotic recombination protein rec8 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=rec8 PE=1 SV=2
Length = 561
Score = 63.5 bits (153), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 69/145 (47%), Gaps = 26/145 (17%)
Query: 1 MFYSQTFLAR-KGPLGTVWCAAHL--QHRLKKSH---YTSTNIPSTVDRIMCPDVPIALR 54
MFY+Q L + KG +G +W AA L +H L+K H S +I D + P+ALR
Sbjct: 1 MFYNQDVLTKEKGGMGVIWLAATLGSKHSLRKLHKKDIMSVDIDEACDFVAFSPEPLALR 60
Query: 55 MSGHLLLGVVRIYSKKVDYLYHDCNVFLISLRKT--------FSTVSVN----------L 96
+S +L++GV R+++ + + + + + +RK F + + L
Sbjct: 61 LSSNLMIGVTRVWAHQYSFFHSQVSTLHLRVRKELDHFTSKPFKNIDIQNEQTNPKQLLL 120
Query: 97 PEDATHAPAHTVTLPQKFNLDSVDL 121
ED P V+L FNL SVDL
Sbjct: 121 AEDPAFIPE--VSLYDAFNLPSVDL 143
>sp|O95072|REC8_HUMAN Meiotic recombination protein REC8 homolog OS=Homo sapiens GN=REC8
PE=2 SV=1
Length = 547
Score = 52.4 bits (124), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 49/110 (44%), Gaps = 14/110 (12%)
Query: 1 MFYSQTFLAR-KGPLGTVWCAAHLQHRLKKSHYTSTNIPSTVDRIMC----------PDV 49
MFY L R G T+W AA RL K Y N+ T + I+ P +
Sbjct: 1 MFYYPNVLQRHTGCFATIWLAATRGSRLVKREYLRVNVVKTCEEILNYVLVRVQPPQPGL 60
Query: 50 P---IALRMSGHLLLGVVRIYSKKVDYLYHDCNVFLISLRKTFSTVSVNL 96
P +L +S L +GV+R+YS++ YL D L L + + +++
Sbjct: 61 PRPRFSLYLSAQLQIGVIRVYSQQCQYLVEDIQHILERLHRAQLQIRIDM 110
>sp|Q6AYJ4|REC8_RAT Meiotic recombination protein REC8 homolog OS=Rattus norvegicus
GN=Rec8 PE=1 SV=1
Length = 593
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 49/112 (43%), Gaps = 14/112 (12%)
Query: 1 MFYSQTFLAR-KGPLGTVWCAAHLQHRLKKSHYTSTNIPSTVDRIM----------CPDV 49
MFY L R G T+W AA RL K Y N+ T + I+ P +
Sbjct: 1 MFYYPNVLQRHTGCFATIWLAATRGSRLVKREYLKVNVVKTCEEILNYVLVRVQPPMPGL 60
Query: 50 P---IALRMSGHLLLGVVRIYSKKVDYLYHDCNVFLISLRKTFSTVSVNLPE 98
P +L +S L +GV+R+Y ++ YL D L L + + +++ E
Sbjct: 61 PRPRFSLYLSAQLQIGVIRVYFQQCQYLVEDIQHILEHLHRAQLRIRIDMEE 112
>sp|Q12158|SCC1_YEAST Sister chromatid cohesion protein 1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=MCD1 PE=1 SV=1
Length = 566
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 43/90 (47%), Gaps = 10/90 (11%)
Query: 11 KGPLGTVWCAAHLQHRLKKSHYTSTNIPSTVDRIM----CPDVP-----IALRMSGHLLL 61
KGPL +W A+++ + + + T+I + I C D I LR SG LL
Sbjct: 18 KGPLAQIWLASNMSN-IPRGSVIQTHIAESAKEIAKASGCDDESGDNEYITLRTSGELLQ 76
Query: 62 GVVRIYSKKVDYLYHDCNVFLISLRKTFST 91
G+VR+YSK+ +L D L + F T
Sbjct: 77 GIVRVYSKQATFLLTDIKDTLTKISMLFKT 106
>sp|Q8C5S7|REC8_MOUSE Meiotic recombination protein REC8 homolog OS=Mus musculus GN=Rec8
PE=1 SV=1
Length = 591
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 48/112 (42%), Gaps = 14/112 (12%)
Query: 1 MFYSQTFLAR-KGPLGTVWCAAHLQHRLKKSHYTSTNIPSTVDRIM-------------C 46
MFY L R G T+W AA RL K Y + N+ T + I+
Sbjct: 1 MFYYPNVLQRHTGCFATIWLAATRGSRLVKREYLNVNVVKTCEEILNYVLVRVQPPVAGL 60
Query: 47 PDVPIALRMSGHLLLGVVRIYSKKVDYLYHDCNVFLISLRKTFSTVSVNLPE 98
P +L +S L +GV+R+Y ++ YL D L L + + +++ E
Sbjct: 61 PRPRFSLYLSAQLQIGVIRVYFQQCQYLVEDIQHILEHLHRAQLRIRIDMEE 112
>sp|Q12188|REC8_YEAST Meiotic recombination protein REC8 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=REC8 PE=1 SV=1
Length = 680
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 34/62 (54%)
Query: 27 LKKSHYTSTNIPSTVDRIMCPDVPIALRMSGHLLLGVVRIYSKKVDYLYHDCNVFLISLR 86
+KK + +IP T D I + +LR +LL GV Y+KK +Y+ +D N L+ L+
Sbjct: 53 VKKKDIVNISIPKTCDEIQNFENDFSLRYISNLLYGVTICYNKKTEYVLNDLNHLLVQLQ 112
Query: 87 KT 88
K
Sbjct: 113 KN 114
>sp|Q97T80|ZMPC_STRPN Zinc metalloprotease ZmpC OS=Streptococcus pneumoniae serotype 4
(strain ATCC BAA-334 / TIGR4) GN=zmpC PE=3 SV=1
Length = 1856
Score = 34.3 bits (77), Expect = 1.6, Method: Composition-based stats.
Identities = 28/107 (26%), Positives = 43/107 (40%), Gaps = 22/107 (20%)
Query: 211 TEDIQDPGASHQGEL-----------PTDSEGLQEPGPSNQTEVLGE---------TVEL 250
T+ Q+PG H+GE P +++G Q PG + V E T
Sbjct: 316 TKGTQEPG--HEGEAAVREDLPVYTKPLETKGTQGPGHEGEAAVREEEPAYTEPLATKGT 373
Query: 251 QEPGPSNQTEVLRETVNFQEPDLSNQTEVLHRSTDHTSPPKFPEVEV 297
QEPG + V ET+ + EP + T+ + + P +EV
Sbjct: 374 QEPGHEGKATVREETLEYTEPVATKGTQEPEHEGEAAVEEELPALEV 420
>sp|Q9LUR0|CNDH2_ARATH Condensin-2 complex subunit H2 OS=Arabidopsis thaliana GN=CAPH2
PE=2 SV=1
Length = 683
Score = 33.9 bits (76), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 20/28 (71%)
Query: 49 VPIALRMSGHLLLGVVRIYSKKVDYLYH 76
+P+ + LL G V++YSKKV+YLY+
Sbjct: 56 IPVNFAEAALLLQGSVQVYSKKVEYLYN 83
>sp|O86528|SYE_STRCO Glutamate--tRNA ligase OS=Streptomyces coelicolor (strain ATCC
BAA-471 / A3(2) / M145) GN=gltX PE=3 SV=1
Length = 494
Score = 32.7 bits (73), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 7/56 (12%)
Query: 130 YDNHSRSQEDITLTDQIPVGRDVYV-------AITFDEDIMMDSTHPPEDVPDSGV 178
YD H R D + + GR+ V AITF + + + T+ PE+VPD G+
Sbjct: 135 YDGHCRELTDAQVEEYTSQGREPIVRFRMPDEAITFTDLVRGEITYLPENVPDYGI 190
>sp|F4I4P3|MED23_ARATH Mediator of RNA polymerase II transcription subunit 23 OS=Arabidopsis
thaliana GN=MED23 PE=1 SV=1
Length = 1615
Score = 32.0 bits (71), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Query: 181 MQDILRA---PPSDADVGIQDPGPSNQTEVLNVTEDIQDPGASHQGELPT 227
M DIL + PP G PGP+N +E IQDPG Q L T
Sbjct: 1242 MADILNSSARPPHGKTPGTSQPGPANASEGQKAFYQIQDPGTYTQLVLET 1291
>sp|Q6H236|PEG3_BOVIN Paternally-expressed gene 3 protein OS=Bos taurus GN=PEG3 PE=2 SV=1
Length = 2387
Score = 32.0 bits (71), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 40/83 (48%)
Query: 196 IQDPGPSNQTEVLNVTEDIQDPGASHQGELPTDSEGLQEPGPSNQTEVLGETVELQEPGP 255
Q+P ++ TE T ++P + E P + QEP ++ TE +T +EP
Sbjct: 1340 TQEPAQTSCTEEPAQTSYTEEPAQTSYTEEPAQTSYTQEPAQTSCTEEPAQTSYTEEPAQ 1399
Query: 256 SNQTEVLRETVNFQEPDLSNQTE 278
++ TE +T QEP ++ TE
Sbjct: 1400 TSYTEEPAQTSYTQEPAQTSYTE 1422
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.132 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 149,151,173
Number of Sequences: 539616
Number of extensions: 6817797
Number of successful extensions: 13767
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 71
Number of HSP's that attempted gapping in prelim test: 13475
Number of HSP's gapped (non-prelim): 248
length of query: 367
length of database: 191,569,459
effective HSP length: 119
effective length of query: 248
effective length of database: 127,355,155
effective search space: 31584078440
effective search space used: 31584078440
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 62 (28.5 bits)