Query 017686
Match_columns 367
No_of_seqs 181 out of 320
Neff 3.6
Searched_HMMs 46136
Date Fri Mar 29 02:33:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017686.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017686hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1213 Sister chromatid cohes 100.0 1.8E-43 3.8E-48 366.9 15.9 124 1-124 1-124 (614)
2 PF04825 Rad21_Rec8_N: N termi 100.0 2.1E-39 4.6E-44 272.3 4.7 111 1-111 1-111 (111)
3 PF06278 DUF1032: Protein of u 84.3 0.72 1.6E-05 49.4 2.7 34 57-90 7-40 (565)
4 PF05786 Cnd2: Condensin compl 50.6 24 0.00052 38.7 5.0 72 16-87 81-154 (725)
5 KOG2359 Uncharacterized conser 35.3 18 0.00039 39.5 1.1 38 50-87 57-94 (688)
6 KOG2328 Chromosome condensatio 30.4 59 0.0013 36.2 4.0 71 17-87 65-137 (702)
7 COG1965 CyaY Protein implicate 28.4 19 0.00041 31.4 -0.0 21 4-24 47-67 (106)
8 TIGR03422 mito_frataxin fratax 27.4 15 0.00033 31.0 -0.8 19 4-22 46-64 (97)
9 TIGR03421 FeS_CyaY iron donor 23.5 16 0.00035 31.0 -1.3 21 4-24 44-64 (102)
10 cd00503 Frataxin Frataxin is a 23.1 19 0.00042 30.6 -0.9 21 4-24 47-67 (105)
No 1
>KOG1213 consensus Sister chromatid cohesion complex Cohesin, subunit RAD21/SCC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=1.8e-43 Score=366.90 Aligned_cols=124 Identities=52% Similarity=0.912 Sum_probs=120.9
Q ss_pred CCchhhhhhccCChhHHHHHhhcCCccCchhhccCChHHHHHHHhCCCCceehhhhccccceeEEEEecchhhhHhhHHH
Q 017686 1 MFYSQTFLARKGPLGTVWCAAHLQHRLKKSHYTSTNIPSTVDRIMCPDVPIALRMSGHLLLGVVRIYSKKVDYLYHDCNV 80 (367)
Q Consensus 1 MFYS~~LLsKkGpLa~IWLAATl~kKLsKkqIl~vdI~kacd~Il~P~~PlALRLSg~LLlGVVRIYsrKv~YLl~Dcn~ 80 (367)
|||||.||+||||||+|||||||+|||+|+||++|||+++|+.|++|.+|||||+|||||+||||||||||+||++|||+
T Consensus 1 MFYs~~vLakKGPLa~IWlAAh~~kKL~K~qv~~tdI~~sve~Il~p~~~lALRtSghLLlGVVRIYSrK~~YLl~Dcne 80 (614)
T KOG1213|consen 1 MFYSHFVLAKKGPLAKIWLAAHWEKKLSKAQVFETDIPQSVEEILQPKVPLALRTSGHLLLGVVRIYSRKVKYLLDDCNE 80 (614)
T ss_pred CcchhhhHhhcCchhhhhHHhHHhhhcchhheeeccHHHHHHHHhCcccceehhhhcccceeeEEeehhhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcccccCCCCCCCCCCCccccCCCCCCCCCCCCCCC
Q 017686 81 FLISLRKTFSTVSVNLPEDATHAPAHTVTLPQKFNLDSVDLDDH 124 (367)
Q Consensus 81 ~l~kIk~aFr~~~vdLp~~~~~A~~eaITLPd~f~Ld~LdLdd~ 124 (367)
++.|||++||++++++|..+..+..++||||++|.++++++.+.
T Consensus 81 al~kIk~afr~~~vd~p~~~~~~~~~siTLPE~~~d~d~~l~~~ 124 (614)
T KOG1213|consen 81 ALLKIKMAFRSGQVDLPELAPRLPTHSITLPETFEDDDFDLPDE 124 (614)
T ss_pred HHHHHHHHhccccccCCCcccccccccccchhhhcccccccccc
Confidence 99999999999999999999999999999999999998888753
No 2
>PF04825 Rad21_Rec8_N: N terminus of Rad21 / Rec8 like protein; InterPro: IPR006910 This domain represents a conserved N-terminal region found in eukaryotic cohesins of the Rad21, Rec8 and Scc1 families. Rad21/Rec8 like proteins mediate sister chromatid cohesion during mitosis and meiosis, as part of the cohesin complex []. Cohesion is necessary for homologous recombination (including double-strand break repair) and correct chromatid segregation. These proteins may also be involved in chromosome condensation. Dissociation at the metaphase to anaphase transition causes loss of cohesion and chromatid segregation [].; GO: 0005515 protein binding
Probab=100.00 E-value=2.1e-39 Score=272.27 Aligned_cols=111 Identities=48% Similarity=0.879 Sum_probs=109.4
Q ss_pred CCchhhhhhccCChhHHHHHhhcCCccCchhhccCChHHHHHHHhCCCCceehhhhccccceeEEEEecchhhhHhhHHH
Q 017686 1 MFYSQTFLARKGPLGTVWCAAHLQHRLKKSHYTSTNIPSTVDRIMCPDVPIALRMSGHLLLGVVRIYSKKVDYLYHDCNV 80 (367)
Q Consensus 1 MFYS~~LLsKkGpLa~IWLAATl~kKLsKkqIl~vdI~kacd~Il~P~~PlALRLSg~LLlGVVRIYsrKv~YLl~Dcn~ 80 (367)
||||++||+|+|+|++||+|||+++||+|++|+++||+++|++|++|+.|+|||+||+||+||||||+|||+||++||+.
T Consensus 1 MFy~~~iL~k~~~l~~vWlaat~~~kl~k~~i~~vdI~~~c~~I~~~~~~~sLRlss~LL~Gvv~Iy~kKv~yLl~D~~~ 80 (111)
T PF04825_consen 1 MFYSHDILSKKGPLATVWLAATLGKKLSKKQILQVDIPKICEEIIEPENPLSLRLSSQLLYGVVRIYSKKVEYLLSDCNE 80 (111)
T ss_pred CCccHHHHhcCCcHHHHHHHHhccCCCCHHHHHhCCHHHHHHHHhCCCcCeeHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcccccCCCCCCCCCCCccccCC
Q 017686 81 FLISLRKTFSTVSVNLPEDATHAPAHTVTLP 111 (367)
Q Consensus 81 ~l~kIk~aFr~~~vdLp~~~~~A~~eaITLP 111 (367)
++.+|+++|++..+++|+++..|++++||||
T Consensus 81 ~~~~l~~~~~~~~~dl~~~~~~~~~~~it~p 111 (111)
T PF04825_consen 81 LLSKLKRAFRPKKIDLPKDKTKASRNAITLP 111 (111)
T ss_pred HHHHHHHHhcccccCCCccccCCChhhccCc
Confidence 9999999999888899999999999999998
No 3
>PF06278 DUF1032: Protein of unknown function (DUF1032); InterPro: IPR009378 This entry includes a regulatory subunit of Non-SMC condensin II complex called H2. Non-SMC condensin II complex seems to provide chromosomes with an additional level of organisation and rigidity and in establishing mitotic chromosome architecture. May play a role in lineage-specific role in T-cell development.
Probab=84.25 E-value=0.72 Score=49.45 Aligned_cols=34 Identities=35% Similarity=0.391 Sum_probs=29.1
Q ss_pred ccccceeEEEEecchhhhHhhHHHHHHHHHHhhc
Q 017686 57 GHLLLGVVRIYSKKVDYLYHDCNVFLISLRKTFS 90 (367)
Q Consensus 57 g~LLlGVVRIYsrKv~YLl~Dcn~~l~kIk~aFr 90 (367)
+.|+-|.+-||||||+|||+=+-.++.-|..--+
T Consensus 7 alliQgsa~vYskKVeyly~lv~~~l~~l~~~~~ 40 (565)
T PF06278_consen 7 ALLIQGSACVYSKKVEYLYSLVYQALDFLSGKKR 40 (565)
T ss_pred HHHHhcchhhHHHHHHHHHHHHHHHHHHHhcccc
Confidence 3477899999999999999999999988876544
No 4
>PF05786 Cnd2: Condensin complex subunit 2; InterPro: IPR022816 This entry represents eukaryotic condensin complex subunit 2 proteins. Included in this group are several Barren protein homologues from several eukaryotic organisms. In Drosophila Barren (barr) is required for sister-chromatid segregation in mitosis. barr encodes a novel protein that is present in proliferating cells and has homologues in yeast and human. Mitotic defects in barr embryos become apparent during cycle 16, resulting in a loss of PNS and CNS neurons. Centromeres move apart at the metaphase-anaphase transition and Cyclin B is degraded, but sister chromatids remain connected, resulting in chromatin bridging. Barren protein localises to chromatin throughout mitosis. Colocalisation and biochemical experiments indicate that Barren associates with Topoisomerase II throughout mitosis and alters the activity of Topoisomerase II. It has been suggested that this association is required for proper chromosomal segregation by facilitating the decatenation of chromatids at anaphase [].
Probab=50.57 E-value=24 Score=38.72 Aligned_cols=72 Identities=14% Similarity=0.158 Sum_probs=60.0
Q ss_pred HHHHHhhcCCccCchhhccCChHHHHHHHhCC--CCceehhhhccccceeEEEEecchhhhHhhHHHHHHHHHH
Q 017686 16 TVWCAAHLQHRLKKSHYTSTNIPSTVDRIMCP--DVPIALRMSGHLLLGVVRIYSKKVDYLYHDCNVFLISLRK 87 (367)
Q Consensus 16 ~IWLAATl~kKLsKkqIl~vdI~kacd~Il~P--~~PlALRLSg~LLlGVVRIYsrKv~YLl~Dcn~~l~kIk~ 87 (367)
.-|+-...+.||+.|.-+.+.+......|+.- ..-+..--.|--|-|-|+||+-.|.-++.++-+++..|.+
T Consensus 81 ~~~ikl~~~NKIn~~Naw~~~lID~~~~~~~~~~~~~~nFq~As~tLd~~~KIy~~RVDsv~~~t~k~l~~l~~ 154 (725)
T PF05786_consen 81 EECIKLATENKINAKNAWNLALIDYFHDLIDKKDGDMINFQKASCTLDASVKIYSSRVDSVHTETYKLLSGLAR 154 (725)
T ss_pred HHHHHHHhhCCcccccccchhHHHHHHHHHhccccccchHHHhhhheeeeeeEEeeeehHHHHHHHHHHHhccc
Confidence 34666667789999999999998888777643 2346667788899999999999999999999999999963
No 5
>KOG2359 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.34 E-value=18 Score=39.51 Aligned_cols=38 Identities=16% Similarity=0.295 Sum_probs=29.2
Q ss_pred ceehhhhccccceeEEEEecchhhhHhhHHHHHHHHHH
Q 017686 50 PIALRMSGHLLLGVVRIYSKKVDYLYHDCNVFLISLRK 87 (367)
Q Consensus 50 PlALRLSg~LLlGVVRIYsrKv~YLl~Dcn~~l~kIk~ 87 (367)
++..--.+.||-|-|-||+|||+|||.=+-.++.-+.+
T Consensus 57 ~~~f~~a~~~~qgs~~vy~~kv~~~y~l~~~~~~~~~~ 94 (688)
T KOG2359|consen 57 TYDFQRACRIIQGSCAVYGRKVDHVYELTISVVDLVEN 94 (688)
T ss_pred cccHHHHHHHHhcchhhhhhhhHHHHHHHHHHHHHHHh
Confidence 44445567789999999999999999877766665544
No 6
>KOG2328 consensus Chromosome condensation complex Condensin, subunit H [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=30.36 E-value=59 Score=36.23 Aligned_cols=71 Identities=15% Similarity=0.165 Sum_probs=60.2
Q ss_pred HHHHhhcCCccCchhhccCChHHHHHHHhC--CCCceehhhhccccceeEEEEecchhhhHhhHHHHHHHHHH
Q 017686 17 VWCAAHLQHRLKKSHYTSTNIPSTVDRIMC--PDVPIALRMSGHLLLGVVRIYSKKVDYLYHDCNVFLISLRK 87 (367)
Q Consensus 17 IWLAATl~kKLsKkqIl~vdI~kacd~Il~--P~~PlALRLSg~LLlGVVRIYsrKv~YLl~Dcn~~l~kIk~ 87 (367)
=||-..-+.||++|.-++..+....-.|+. -..++.....|-=|-|-|+||+-.|.-+..|+-+++..|-+
T Consensus 65 ~cIKLateNKIntkNtWnl~LID~f~~i~~~kd~e~iNFqkAs~TLdacvKIYs~RVDSV~tea~rlL~GL~~ 137 (702)
T KOG2328|consen 65 NCIKLATENKINTKNTWNLALIDHFANILKLKDGENINFQKASCTLDACVKIYSSRVDSVHTEAMRLLGGLGA 137 (702)
T ss_pred HHHHHhhcCccccccchhHHHHHHHHHHHHhhccCCcchhhhccccccceeeeeeehhHHHHHHHHHhhcccc
Confidence 366666688999999999888877777764 34668888888999999999999999999999999998874
No 7
>COG1965 CyaY Protein implicated in iron transport, frataxin homolog [Inorganic ion transport and metabolism]
Probab=28.45 E-value=19 Score=31.43 Aligned_cols=21 Identities=29% Similarity=0.675 Sum_probs=17.9
Q ss_pred hhhhhhccCChhHHHHHhhcC
Q 017686 4 SQTFLARKGPLGTVWCAAHLQ 24 (367)
Q Consensus 4 S~~LLsKkGpLa~IWLAATl~ 24 (367)
++.|+.|+.|+..||||+-.+
T Consensus 47 s~iiINkQ~P~~qiWlAs~~g 67 (106)
T COG1965 47 SQIIINKQEPLQQIWLASKVG 67 (106)
T ss_pred cEEEEeCCChHHHHHhhccCC
Confidence 455778999999999999885
No 8
>TIGR03422 mito_frataxin frataxin. Frataxin is a mitochondrial protein, mutation of which leads to the disease Friedreich's ataxia. Its orthologs are widely distributed in the bacteria, associated with the ISC system for iron-sulfur cluster assembly, and designated CyaY. This exception-type model allows those examples of frataxin per se that score above the trusted cutoff to the CyaY equivalog-type model (TIGR03421) to be named appropriately.
Probab=27.45 E-value=15 Score=31.04 Aligned_cols=19 Identities=11% Similarity=0.424 Sum_probs=16.5
Q ss_pred hhhhhhccCChhHHHHHhh
Q 017686 4 SQTFLARKGPLGTVWCAAH 22 (367)
Q Consensus 4 S~~LLsKkGpLa~IWLAAT 22 (367)
++.|+.|+.|..+|||||-
T Consensus 46 ~~~VINkQ~p~~QIWlsSp 64 (97)
T TIGR03422 46 GTYVINKQPPNKQIWLSSP 64 (97)
T ss_pred CEEEEeCCChhhHHheecC
Confidence 4568899999999999995
No 9
>TIGR03421 FeS_CyaY iron donor protein CyaY. Members of this protein family are the iron-sulfur cluster (FeS) metabolism protein CyaY, a homolog of eukaryotic frataxin. ISC is one of several bacterial systems for FeS assembly; we find by Partial Phylogenetic Profiling vs. the ISC system that CyaY most like work with the ISC system for FeS cluster biosynthesis. A study of of cyaY mutants in Salmonella enterica bears this out. Although the trusted cutoff is set low enough to include eukaryotic frataxin sequences, a narrower, exception-type model (TIGR03421) identifies identifies members of that specific set.
Probab=23.50 E-value=16 Score=31.01 Aligned_cols=21 Identities=33% Similarity=0.627 Sum_probs=17.7
Q ss_pred hhhhhhccCChhHHHHHhhcC
Q 017686 4 SQTFLARKGPLGTVWCAAHLQ 24 (367)
Q Consensus 4 S~~LLsKkGpLa~IWLAATl~ 24 (367)
++.|++|..|..+|||||-.+
T Consensus 44 ~~~VINkQ~p~~QIWlaspsG 64 (102)
T TIGR03421 44 SQIIINKQEPLHQIWLAAKSG 64 (102)
T ss_pred CEEEEeCCchhhhheeecCCC
Confidence 456788999999999998764
No 10
>cd00503 Frataxin Frataxin is a nuclear-encoded mitochondrial protein implicated in Friedreich's ataxia (FRDA), an human autosomal recessive neurodegenerative disease; Frataxin is found in eukaryotes and in purple bacteria; lack of frataxin causes iron to accumulate in the mitochondrial matrix suggesting that frataxin is involved in mitochondrial iron homeostasis and possibly in iron transport; the domain has an alpha-beta fold consisting of two helices flanking an antiparallel beta sheet.
Probab=23.12 E-value=19 Score=30.63 Aligned_cols=21 Identities=29% Similarity=0.650 Sum_probs=17.8
Q ss_pred hhhhhhccCChhHHHHHhhcC
Q 017686 4 SQTFLARKGPLGTVWCAAHLQ 24 (367)
Q Consensus 4 S~~LLsKkGpLa~IWLAATl~ 24 (367)
++.|+.|..|..+|||||-.+
T Consensus 47 ~~~VINkQ~p~~QIWlaSp~G 67 (105)
T cd00503 47 STIVINRQEPLRQIWLASKVG 67 (105)
T ss_pred CEEEEeCCchhhhhheecCCC
Confidence 345788999999999999875
Done!