Query 017686
Match_columns 367
No_of_seqs 181 out of 320
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 03:20:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017686.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017686hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ew4_A CYAY protein; friedreic 15.6 9 0.00031 31.5 -3.4 21 4-24 47-67 (106)
2 4h62_V Mediator of RNA polymer 13.4 64 0.0022 21.4 1.0 23 61-83 4-26 (31)
3 3t3l_A Frataxin, mitochondrial 12.2 13 0.00046 31.7 -3.4 20 4-23 60-79 (129)
4 3oeq_A Frataxin homolog, mitoc 10.2 19 0.00064 30.7 -3.1 19 4-22 66-84 (123)
5 2cme_A ORF-9B, ORF13, hypothet 6.0 1.7E+02 0.0057 22.9 0.8 19 50-68 24-42 (78)
6 2oqo_A Penicillin-binding prot 5.7 1.3E+02 0.0045 27.1 0.1 25 13-37 94-118 (200)
7 3hzs_A Monofunctional glycosyl 5.6 1.3E+02 0.0045 27.4 0.1 23 13-35 94-116 (209)
8 2fa8_A Hypothetical protein AT 5.4 5.2E+02 0.018 21.0 3.5 28 63-91 10-37 (105)
9 3p6j_A De novo designed beta-t 4.5 2.1E+02 0.0072 24.4 0.5 16 60-75 71-86 (142)
10 2qyb_A Membrane protein, putat 4.5 4.8E+02 0.016 20.2 2.7 36 50-85 112-148 (181)
No 1
>1ew4_A CYAY protein; friedreich ataxia, frataxin family, iron homeostasis, unknown function; 1.40A {Escherichia coli} SCOP: d.82.2.1 PDB: 2eff_A 2p1x_A 1soy_A
Probab=15.58 E-value=9 Score=31.52 Aligned_cols=21 Identities=33% Similarity=0.624 Sum_probs=17.6
Q ss_pred hhhhhhccCChhHHHHHhhcC
Q 017686 4 SQTFLARKGPLGTVWCAAHLQ 24 (367)
Q Consensus 4 S~~LLsKkGpLa~IWLAATl~ 24 (367)
++.|+.|+.|+.+|||||-.+
T Consensus 47 ~~~VINkQ~P~~QIWlaSp~s 67 (106)
T 1ew4_A 47 SKIIINRQEPLHQVWLATKQG 67 (106)
T ss_dssp CEEEEEEETTTTEEEEECSSC
T ss_pred CEEEEeCCchhhhheEecCCC
Confidence 346788999999999998874
No 2
>4h62_V Mediator of RNA polymerase II transcription subun; mediator complex, nucleus; HET: MES; 3.00A {Saccharomyces cerevisiae}
Probab=13.38 E-value=64 Score=21.35 Aligned_cols=23 Identities=26% Similarity=0.509 Sum_probs=15.1
Q ss_pred ceeEEEEecchhhhHhhHHHHHH
Q 017686 61 LGVVRIYSKKVDYLYHDCNVFLI 83 (367)
Q Consensus 61 lGVVRIYsrKv~YLl~Dcn~~l~ 83 (367)
.||.|.-.+|++-|++.|-+.+.
T Consensus 4 sgvtrfdekqieelldncietfv 26 (31)
T 4h62_V 4 SGVTRFDEKQIEELLDNCIETFV 26 (31)
T ss_dssp ------CHHHHHHHHHHHHHHHH
T ss_pred CccccccHHHHHHHHHHHHHHHH
Confidence 48999999999999999988765
No 3
>3t3l_A Frataxin, mitochondrial; Fe-S cluster biosynthesis, human mitochondria, oxidoreductas; 1.15A {Homo sapiens} SCOP: d.82.2.1 PDB: 3s4m_A 3t3k_A 3t3j_A 3s5f_A 3t3x_A 3t3t_A 3s5e_A 3s5d_A 1ekg_A 1ly7_A
Probab=12.21 E-value=13 Score=31.67 Aligned_cols=20 Identities=10% Similarity=0.386 Sum_probs=17.2
Q ss_pred hhhhhhccCChhHHHHHhhc
Q 017686 4 SQTFLARKGPLGTVWCAAHL 23 (367)
Q Consensus 4 S~~LLsKkGpLa~IWLAATl 23 (367)
++.|+.|+.|+.+|||||-.
T Consensus 60 g~~VINkQ~P~~QIWLASp~ 79 (129)
T 3t3l_A 60 GTYVINKQTPNKAIWLSSPS 79 (129)
T ss_dssp CEEEEEEETTTTEEEEECSS
T ss_pred CEEEEeCCchhhHhheeCCC
Confidence 45688899999999999984
No 4
>3oeq_A Frataxin homolog, mitochondrial; alpha/beta sandwich, metallochaperone, iron-storage, transpo protein; 2.96A {Saccharomyces cerevisiae} SCOP: d.82.2.1 PDB: 2fql_A 3oer_A 2ga5_A
Probab=10.19 E-value=19 Score=30.70 Aligned_cols=19 Identities=16% Similarity=0.447 Sum_probs=16.4
Q ss_pred hhhhhhccCChhHHHHHhh
Q 017686 4 SQTFLARKGPLGTVWCAAH 22 (367)
Q Consensus 4 S~~LLsKkGpLa~IWLAAT 22 (367)
++.|+.|+.|..+|||||-
T Consensus 66 ~~~VINkQ~P~~QIWlaSp 84 (123)
T 3oeq_A 66 GTYVINKQPPNKQIWLASP 84 (123)
T ss_dssp CCEEEECCCSSSCCEEEET
T ss_pred CEEEEeCCChhhHHheecC
Confidence 4567889999999999996
No 5
>2cme_A ORF-9B, ORF13, hypothetical protein 5; alternative open reading frame, lipid-binding, virus assembly; HET: D10; 2.8A {Human sars coronavirus} SCOP: b.164.1.1 PDB: 2cme_B* 2cme_E* 2cme_C*
Probab=6.04 E-value=1.7e+02 Score=22.92 Aligned_cols=19 Identities=37% Similarity=0.546 Sum_probs=16.3
Q ss_pred ceehhhhccccceeEEEEe
Q 017686 50 PIALRMSGHLLLGVVRIYS 68 (367)
Q Consensus 50 PlALRLSg~LLlGVVRIYs 68 (367)
|+-|||-+||-+..||--.
T Consensus 24 piilrlgs~lslsm~rr~~ 42 (78)
T 2cme_A 24 PIILRLGSNLSLSMARRNL 42 (78)
T ss_dssp EEEECCSSCCEEEEEEBCC
T ss_pred eeeeeeccccchHHHHccc
Confidence 7899999999999998543
No 6
>2oqo_A Penicillin-binding protein 1A (PBP-1A) (PBP1A); transferase; HET: EPE CPS; 2.10A {Aquifex aeolicus} SCOP: d.2.1.10 PDB: 3d3h_A* 3nb7_A 3nb6_A
Probab=5.66 E-value=1.3e+02 Score=27.08 Aligned_cols=25 Identities=8% Similarity=0.154 Sum_probs=20.5
Q ss_pred ChhHHHHHhhcCCccCchhhccCCh
Q 017686 13 PLGTVWCAAHLQHRLKKSHYTSTNI 37 (367)
Q Consensus 13 pLa~IWLAATl~kKLsKkqIl~vdI 37 (367)
.+..+|+|--++++++|++|++.=+
T Consensus 94 K~~E~~~A~~lE~~~sK~eILe~YL 118 (200)
T 2oqo_A 94 KIKEALLAIKIERTFDKKKIMELYL 118 (200)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 4677899999999999999887543
No 7
>3hzs_A Monofunctional glycosyltransferase; transglycosylase, peptidoglycan, moenomycin, membrane, cell shape; HET: M0E; 2.10A {Staphylococcus aureus subsp} SCOP: d.2.1.0
Probab=5.62 E-value=1.3e+02 Score=27.39 Aligned_cols=23 Identities=13% Similarity=0.241 Sum_probs=19.6
Q ss_pred ChhHHHHHhhcCCccCchhhccC
Q 017686 13 PLGTVWCAAHLQHRLKKSHYTST 35 (367)
Q Consensus 13 pLa~IWLAATl~kKLsKkqIl~v 35 (367)
.+..+|+|..++++++|++|++.
T Consensus 94 K~~E~~lA~~lE~~~sK~eILe~ 116 (209)
T 3hzs_A 94 KVKELFVAHRVEKQYNKNEILSF 116 (209)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHH
Confidence 46788999999999999998764
No 8
>2fa8_A Hypothetical protein ATU0228; ALPH-beta structure, 4 helix bundle, structural genomics, PS protein structure initiative; 1.90A {Agrobacterium tumefaciens str} SCOP: c.47.1.23
Probab=5.36 E-value=5.2e+02 Score=21.02 Aligned_cols=28 Identities=14% Similarity=0.358 Sum_probs=23.5
Q ss_pred eEEEEecchhhhHhhHHHHHHHHHHhhcc
Q 017686 63 VVRIYSKKVDYLYHDCNVFLISLRKTFST 91 (367)
Q Consensus 63 VVRIYsrKv~YLl~Dcn~~l~kIk~aFr~ 91 (367)
|...|..+|+|++. +..+...|...|..
T Consensus 10 V~I~YC~~C~~~~R-a~~laqeLl~tF~~ 37 (105)
T 2fa8_A 10 IAIRYCTQCNWLLR-AGWMAQEILQTFAS 37 (105)
T ss_dssp EEEEEETTTTCHHH-HHHHHHHHHHHHGG
T ss_pred EEEEECCCCCCHHH-HHHHHHHHHHHcCc
Confidence 77889999999997 77777888888854
No 9
>3p6j_A De novo designed beta-trefoil architecture with S primary structure; de novo protein; 1.35A {Synthetic}
Probab=4.48 E-value=2.1e+02 Score=24.35 Aligned_cols=16 Identities=19% Similarity=0.025 Sum_probs=12.8
Q ss_pred cceeEEEEecchhhhH
Q 017686 60 LLGVVRIYSKKVDYLY 75 (367)
Q Consensus 60 LlGVVRIYsrKv~YLl 75 (367)
-.|+|+||+.+..|+|
T Consensus 71 ~~G~V~L~g~~sg~yL 86 (142)
T 3p6j_A 71 GNGEVLLKSTETGQYL 86 (142)
T ss_dssp ETTEEEEEETTTTEEE
T ss_pred cCCEEEEEEecCCEEE
Confidence 3589999999877655
No 10
>2qyb_A Membrane protein, putative; GAF domain, domain of putative membrane protein, PSI-2, MCSG structural genomics; 2.40A {Geobacter sulfurreducens pca}
Probab=4.48 E-value=4.8e+02 Score=20.19 Aligned_cols=36 Identities=22% Similarity=0.331 Sum_probs=23.6
Q ss_pred ceehhhhccccceeEEEEe-cchhhhHhhHHHHHHHH
Q 017686 50 PIALRMSGHLLLGVVRIYS-KKVDYLYHDCNVFLISL 85 (367)
Q Consensus 50 PlALRLSg~LLlGVVRIYs-rKv~YLl~Dcn~~l~kI 85 (367)
-++|+..+.-++||.-+|+ ++...+-.+--.++..+
T Consensus 112 ~vPl~~~~~~~~GvL~l~~~~~~~~f~~~d~~lL~~l 148 (181)
T 2qyb_A 112 HIPISRKGEPPFGILSVFSRTIVGLFNEPFLNLLESL 148 (181)
T ss_dssp EEEECCTTSCCCEEEEEEESSCSSCCCHHHHHHHHHH
T ss_pred EEEEEeCCCeEEEEEEEecCCCCCCCCHHHHHHHHHH
Confidence 3678877775789999999 65555444444444443
Done!