Query 017686
Match_columns 367
No_of_seqs 181 out of 320
Neff 3.6
Searched_HMMs 13730
Date Mon Mar 25 03:20:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017686.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/017686hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ew4a_ d.82.2.1 (A:) CyaY {Es 13.3 5.3 0.00039 30.9 -3.4 21 4-24 47-67 (106)
2 d1ekga_ d.82.2.1 (A:) C-termin 12.9 4.7 0.00035 31.8 -3.8 21 4-24 52-72 (119)
3 d2fqla1 d.82.2.1 (A:61-172) C- 11.5 6.6 0.00048 30.6 -3.3 20 4-23 57-76 (112)
4 d2cmea1 b.164.1.1 (A:9-98) Hyp 6.0 78 0.0057 22.9 0.8 19 50-68 24-42 (78)
5 d1n0ua1 b.43.3.1 (A:344-481) E 5.9 1.4E+02 0.01 23.0 2.4 25 47-71 31-62 (138)
6 d2olua1 d.2.1.10 (A:68-292) Pe 4.9 77 0.0056 27.0 0.2 24 12-35 100-123 (225)
7 d2oqoa1 d.2.1.10 (A:57-243) Pe 4.4 85 0.0062 25.9 0.1 23 13-35 81-103 (187)
8 d1kzla2 b.43.4.3 (A:93-202) Ri 4.1 1.6E+02 0.012 22.0 1.6 17 54-70 1-21 (110)
9 d1k5ja_ b.121.3.1 (A:) Nucleop 3.9 1.7E+02 0.013 22.2 1.6 14 352-365 85-98 (105)
10 d1xe0a_ b.121.3.1 (A:) Nucleop 3.7 1.9E+02 0.014 22.2 1.6 13 353-365 88-100 (108)
No 1
>d1ew4a_ d.82.2.1 (A:) CyaY {Escherichia coli [TaxId: 562]}
Probab=13.27 E-value=5.3 Score=30.86 Aligned_cols=21 Identities=33% Similarity=0.624 Sum_probs=17.5
Q ss_pred hhhhhhccCChhHHHHHhhcC
Q 017686 4 SQTFLARKGPLGTVWCAAHLQ 24 (367)
Q Consensus 4 S~~LLsKkGpLa~IWLAATl~ 24 (367)
++.|++|..|..+|||||-.+
T Consensus 47 ~~~VINkQ~p~~QIWlaSpsg 67 (106)
T d1ew4a_ 47 SKIIINRQEPLHQVWLATKQG 67 (106)
T ss_dssp CEEEEEEETTTTEEEEECSSC
T ss_pred CEEEEeCCCccceeeEECCCC
Confidence 346788999999999998764
No 2
>d1ekga_ d.82.2.1 (A:) C-terminal domain of frataxin {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.95 E-value=4.7 Score=31.82 Aligned_cols=21 Identities=10% Similarity=0.362 Sum_probs=17.5
Q ss_pred hhhhhhccCChhHHHHHhhcC
Q 017686 4 SQTFLARKGPLGTVWCAAHLQ 24 (367)
Q Consensus 4 S~~LLsKkGpLa~IWLAATl~ 24 (367)
++.|++|+.|..+|||||-.+
T Consensus 52 ~~~VINkQ~p~~QIWlASp~s 72 (119)
T d1ekga_ 52 GTYVINKQTPNKQIWLSSPSS 72 (119)
T ss_dssp CEEEEEEEGGGTEEEEEETTT
T ss_pred cEEEEeCCCCceeEEEEcCCC
Confidence 356789999999999998763
No 3
>d2fqla1 d.82.2.1 (A:61-172) C-terminal domain of frataxin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=11.53 E-value=6.6 Score=30.63 Aligned_cols=20 Identities=20% Similarity=0.491 Sum_probs=16.9
Q ss_pred hhhhhhccCChhHHHHHhhc
Q 017686 4 SQTFLARKGPLGTVWCAAHL 23 (367)
Q Consensus 4 S~~LLsKkGpLa~IWLAATl 23 (367)
++.|++|..|..+|||||-.
T Consensus 57 ~~~VINkQ~p~~QIWlaSp~ 76 (112)
T d2fqla1 57 GTYVINKQPPNKQIWLASPL 76 (112)
T ss_dssp EEEEEEECCSSSSEEEEETT
T ss_pred CEEEEeCCCchhheeEecCC
Confidence 35678899999999999875
No 4
>d2cmea1 b.164.1.1 (A:9-98) Hypothetical protein 5 (ORF-9b) {SARS coronavirus [TaxId: 227859]}
Probab=6.04 E-value=78 Score=22.92 Aligned_cols=19 Identities=37% Similarity=0.546 Sum_probs=16.3
Q ss_pred ceehhhhccccceeEEEEe
Q 017686 50 PIALRMSGHLLLGVVRIYS 68 (367)
Q Consensus 50 PlALRLSg~LLlGVVRIYs 68 (367)
|+-|||-+||-+..||--.
T Consensus 24 piilrlgs~lslsm~rr~~ 42 (78)
T d2cmea1 24 PIILRLGSNLSLSMARRNL 42 (78)
T ss_dssp EEEECCSSCCEEEEEEBCC
T ss_pred eeeeeeccccchHHHHccc
Confidence 7899999999999998543
No 5
>d1n0ua1 b.43.3.1 (A:344-481) Elongation factor 2 (eEF-2), domain II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=5.89 E-value=1.4e+02 Score=22.97 Aligned_cols=25 Identities=20% Similarity=0.410 Sum_probs=17.2
Q ss_pred CCCceehhhhccc-------cceeEEEEecch
Q 017686 47 PDVPIALRMSGHL-------LLGVVRIYSKKV 71 (367)
Q Consensus 47 P~~PlALRLSg~L-------LlGVVRIYsrKv 71 (367)
|+.|+..-.+... +++++||||-++
T Consensus 31 ~~~Pl~~~v~k~~~~~~~g~~~~~gRV~SGtl 62 (138)
T d1n0ua1 31 PKADLMLYVSKMVPTSDKGRFYAFGRVFAGTV 62 (138)
T ss_dssp TTSSCEEEEEEEEEBSSTTCEEEEEEEEESEE
T ss_pred CCCCEEEEEEeeccCCCCCEEEEEEEEEeceE
Confidence 5677665554444 578999999665
No 6
>d2olua1 d.2.1.10 (A:68-292) Penicillin-binding protein 2, PBP2 {Staphylococcus aureus [TaxId: 1280]}
Probab=4.90 E-value=77 Score=26.95 Aligned_cols=24 Identities=8% Similarity=0.101 Sum_probs=20.4
Q ss_pred CChhHHHHHhhcCCccCchhhccC
Q 017686 12 GPLGTVWCAAHLQHRLKKSHYTST 35 (367)
Q Consensus 12 GpLa~IWLAATl~kKLsKkqIl~v 35 (367)
-.+..+|+|-.++++++|++|++.
T Consensus 100 RK~~E~~~A~~lE~~~sK~eILe~ 123 (225)
T d2olua1 100 RKAQEAYLSYRLEQEYSKDDIFQV 123 (225)
T ss_dssp TTHHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHH
Confidence 467889999999999999998764
No 7
>d2oqoa1 d.2.1.10 (A:57-243) Penicillin-binding protein 1a, PBP1a {Aquifex aeolicus [TaxId: 63363]}
Probab=4.38 E-value=85 Score=25.93 Aligned_cols=23 Identities=9% Similarity=0.147 Sum_probs=19.4
Q ss_pred ChhHHHHHhhcCCccCchhhccC
Q 017686 13 PLGTVWCAAHLQHRLKKSHYTST 35 (367)
Q Consensus 13 pLa~IWLAATl~kKLsKkqIl~v 35 (367)
.+..+|+|-.++++++|++|++.
T Consensus 81 K~~E~~~a~~lE~~~sK~eILe~ 103 (187)
T d2oqoa1 81 KIKEALLAIKIERTFDKKKIMEL 103 (187)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCHHHHHHH
Confidence 46778999999999999998764
No 8
>d1kzla2 b.43.4.3 (A:93-202) Riboflavin synthase {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}
Probab=4.07 E-value=1.6e+02 Score=21.99 Aligned_cols=17 Identities=53% Similarity=0.866 Sum_probs=12.9
Q ss_pred hhhccccce----eEEEEecc
Q 017686 54 RMSGHLLLG----VVRIYSKK 70 (367)
Q Consensus 54 RLSg~LLlG----VVRIYsrK 70 (367)
|+.||++.| +..|-+.+
T Consensus 1 r~~GH~v~GHVd~~g~I~~i~ 21 (110)
T d1kzla2 1 RMGGHFVQGHVDTVAEIVEKK 21 (110)
T ss_dssp CSSSCCBCSCCCEEEEEEEEE
T ss_pred CcceeeeeEEecEEEEEEEEE
Confidence 889999997 66666543
No 9
>d1k5ja_ b.121.3.1 (A:) Nucleoplasmin core {Xenopus laevis [TaxId: 8355]}
Probab=3.88 E-value=1.7e+02 Score=22.23 Aligned_cols=14 Identities=14% Similarity=0.394 Sum_probs=11.3
Q ss_pred cceEEEeecCCCCC
Q 017686 352 PLQLFVSCTGHPVN 365 (367)
Q Consensus 352 ~~~~~~~~~~~~~~ 365 (367)
+-+|.+.||++||-
T Consensus 85 PVtF~L~~GsGPVh 98 (105)
T d1k5ja_ 85 PVTFRLKAGSGPLY 98 (105)
T ss_dssp CEEEEEEECCCCEE
T ss_pred CeEEEEecCCCCEE
Confidence 35799999999984
No 10
>d1xe0a_ b.121.3.1 (A:) Nucleophosmin (NO38) {African clawed frog (Xenopus laevis) [TaxId: 8355]}
Probab=3.69 E-value=1.9e+02 Score=22.20 Aligned_cols=13 Identities=23% Similarity=0.263 Sum_probs=10.8
Q ss_pred ceEEEeecCCCCC
Q 017686 353 LQLFVSCTGHPVN 365 (367)
Q Consensus 353 ~~~~~~~~~~~~~ 365 (367)
-+|.+.||++||-
T Consensus 88 VtF~L~~GsGPVh 100 (108)
T d1xe0a_ 88 VILRLKSGSGPVY 100 (108)
T ss_dssp EEEEEEESCCCEE
T ss_pred eEEEEecCCCCEE
Confidence 5789999999974
Done!