Query 017688
Match_columns 367
No_of_seqs 282 out of 1225
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 02:34:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017688.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017688hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03193 beta-1,3-galactosyltr 100.0 1E-100 2E-105 756.5 32.2 367 1-367 39-408 (408)
2 KOG2288 Galactosyltransferases 100.0 1.7E-71 3.7E-76 513.8 17.6 265 95-367 8-273 (274)
3 PLN03133 beta-1,3-galactosyltr 100.0 3.5E-54 7.6E-59 447.6 21.3 234 95-365 382-623 (636)
4 KOG2287 Galactosyltransferases 100.0 6.2E-53 1.3E-57 417.5 20.6 239 97-365 94-336 (349)
5 PF01762 Galactosyl_T: Galacto 100.0 1.4E-48 3E-53 356.1 16.9 191 112-310 1-195 (195)
6 PTZ00210 UDP-GlcNAc-dependent 100.0 2.2E-33 4.8E-38 274.6 15.2 193 92-303 74-307 (382)
7 PF02434 Fringe: Fringe-like; 99.8 3.4E-19 7.3E-24 169.5 11.9 192 98-316 6-209 (252)
8 PF13334 DUF4094: Domain of un 99.7 1.9E-18 4.1E-23 140.7 5.7 71 1-72 23-94 (95)
9 KOG2246 Galactosyltransferases 99.7 1.8E-16 3.9E-21 157.8 13.0 169 94-309 87-268 (364)
10 PLN03153 hypothetical protein; 99.2 4.1E-10 8.9E-15 115.2 14.7 186 97-315 121-318 (537)
11 KOG3708 Uncharacterized conser 97.6 0.00011 2.3E-09 75.3 6.5 200 98-356 26-244 (681)
12 PF01755 Glyco_transf_25: Glyc 95.9 0.16 3.4E-06 46.0 12.5 93 102-211 4-101 (200)
13 PF13641 Glyco_tranf_2_3: Glyc 94.8 0.52 1.1E-05 42.7 11.9 114 186-305 77-198 (228)
14 TIGR03472 HpnI hopanoid biosyn 94.1 1.4 3.1E-05 44.0 14.3 161 136-305 70-241 (373)
15 cd04192 GT_2_like_e Subfamily 93.9 1.9 4E-05 38.6 13.6 156 137-299 29-190 (229)
16 TIGR03469 HonB hopene-associat 93.7 2.8 6E-05 42.2 15.6 160 136-303 70-248 (384)
17 cd02525 Succinoglycan_BP_ExoA 92.5 7.8 0.00017 35.0 15.6 159 135-305 30-196 (249)
18 PF00535 Glycos_transf_2: Glyc 92.3 3.2 6.8E-05 34.5 11.8 156 100-278 2-168 (169)
19 cd02520 Glucosylceramide_synth 92.2 8.1 0.00017 34.3 15.7 133 137-305 31-165 (196)
20 PF13506 Glyco_transf_21: Glyc 92.0 0.44 9.6E-06 42.8 6.4 122 180-307 16-144 (175)
21 cd02510 pp-GalNAc-T pp-GalNAc- 91.9 9 0.00019 36.7 15.9 125 187-311 75-221 (299)
22 PRK11204 N-glycosyltransferase 90.5 17 0.00037 36.6 17.0 192 97-310 53-255 (420)
23 cd06532 Glyco_transf_25 Glycos 89.1 3.6 7.8E-05 34.8 9.2 116 103-284 3-119 (128)
24 cd06421 CESA_CelA_like CESA_Ce 88.5 10 0.00022 34.0 12.5 119 187-311 76-207 (234)
25 cd06439 CESA_like_1 CESA_like_ 87.8 20 0.00043 32.8 14.1 118 186-309 100-223 (251)
26 cd06423 CESA_like CESA_like is 87.5 15 0.00032 30.3 12.1 95 185-279 68-170 (180)
27 cd04186 GT_2_like_c Subfamily 86.5 18 0.00038 30.2 13.4 85 192-308 71-158 (166)
28 cd04185 GT_2_like_b Subfamily 86.4 22 0.00048 31.2 14.2 99 184-312 69-170 (202)
29 cd04187 DPM1_like_bac Bacteria 85.6 8.4 0.00018 33.4 9.8 134 136-280 29-164 (181)
30 cd04196 GT_2_like_d Subfamily 84.3 28 0.0006 30.5 15.7 177 115-309 11-197 (214)
31 cd06434 GT2_HAS Hyaluronan syn 83.8 10 0.00022 34.2 9.9 151 137-304 29-200 (235)
32 PF13632 Glyco_trans_2_3: Glyc 82.3 4.1 8.8E-05 36.0 6.4 115 198-316 1-125 (193)
33 cd04195 GT2_AmsE_like GT2_AmsE 82.0 34 0.00074 29.9 13.1 114 187-309 72-195 (201)
34 cd06433 GT_2_WfgS_like WfgS an 81.4 12 0.00025 32.3 9.0 114 185-305 65-182 (202)
35 PF04646 DUF604: Protein of un 81.2 2 4.4E-05 41.1 4.2 52 264-315 12-67 (255)
36 cd06420 GT2_Chondriotin_Pol_N 79.6 12 0.00025 32.3 8.3 96 187-303 71-166 (182)
37 cd06435 CESA_NdvC_like NdvC_li 78.5 47 0.001 29.9 12.4 114 186-305 73-197 (236)
38 cd04179 DPM_DPG-synthase_like 76.8 20 0.00043 30.8 9.0 135 137-279 29-167 (185)
39 PRK14583 hmsR N-glycosyltransf 76.1 97 0.0021 31.7 17.3 161 136-309 104-275 (444)
40 cd02526 GT2_RfbF_like RfbF is 74.9 63 0.0014 29.0 12.9 125 185-312 66-201 (237)
41 TIGR03111 glyc2_xrt_Gpos1 puta 73.1 78 0.0017 32.4 13.5 126 185-313 121-265 (439)
42 cd02514 GT13_GLCNAC-TI GT13_GL 72.0 17 0.00037 36.3 8.0 82 185-278 87-174 (334)
43 COG1215 Glycosyltransferases, 71.4 90 0.002 31.1 13.4 194 98-310 54-260 (439)
44 COG1216 Predicted glycosyltran 71.1 25 0.00054 34.0 8.9 137 164-303 55-206 (305)
45 cd06437 CESA_CaSu_A2 Cellulose 69.8 85 0.0019 28.3 15.4 118 186-309 78-207 (232)
46 PF10111 Glyco_tranf_2_2: Glyc 69.6 87 0.0019 29.8 12.2 165 134-306 32-211 (281)
47 cd06438 EpsO_like EpsO protein 69.2 24 0.00052 30.8 7.7 89 185-277 70-169 (183)
48 PRK10714 undecaprenyl phosphat 68.9 1E+02 0.0023 30.2 12.9 133 136-280 38-174 (325)
49 PF03071 GNT-I: GNT-I family; 65.0 70 0.0015 33.2 10.9 86 183-280 175-271 (434)
50 COG4092 Predicted glycosyltran 60.3 37 0.0008 33.2 7.4 161 133-299 35-214 (346)
51 cd04184 GT2_RfbC_Mx_like Myxoc 59.8 1.2E+02 0.0025 26.4 16.8 109 186-303 74-187 (202)
52 cd06442 DPM1_like DPM1_like re 59.8 1.2E+02 0.0027 26.7 13.0 90 189-279 72-167 (224)
53 cd02522 GT_2_like_a GT_2_like_ 59.6 58 0.0013 28.8 8.5 105 188-304 65-174 (221)
54 cd04191 Glucan_BSP_ModH Glucan 57.1 1.8E+02 0.0038 27.6 13.9 127 169-303 68-217 (254)
55 PHA01631 hypothetical protein 56.0 31 0.00066 31.2 5.7 92 164-281 39-133 (176)
56 TIGR01556 rhamnosyltran L-rham 55.5 53 0.0012 30.9 7.8 123 186-311 65-197 (281)
57 TIGR03030 CelA cellulose synth 54.6 1.3E+02 0.0028 33.1 11.6 133 178-314 212-357 (713)
58 cd04188 DPG_synthase DPG_synth 53.6 1.6E+02 0.0035 26.0 10.5 88 136-231 30-119 (211)
59 cd04190 Chitin_synth_C C-termi 52.0 19 0.00041 33.5 4.0 110 194-303 72-206 (244)
60 KOG2547 Ceramide glucosyltrans 50.8 16 0.00035 37.1 3.4 99 136-240 114-213 (431)
61 PLN02726 dolichyl-phosphate be 47.1 2.3E+02 0.0049 25.9 16.9 157 136-308 40-211 (243)
62 PLN03181 glycosyltransferase; 42.2 1.5E+02 0.0034 30.7 8.9 92 114-208 108-211 (453)
63 PF04666 Glyco_transf_54: N-Ac 32.8 1.9E+02 0.0042 28.4 7.8 120 95-217 49-191 (297)
64 cd00761 Glyco_tranf_GTA_type G 30.9 2.6E+02 0.0057 21.9 13.2 34 186-219 68-101 (156)
65 PRK05454 glucosyltransferase M 29.9 4.9E+02 0.011 28.7 11.1 201 95-309 121-350 (691)
66 cd06427 CESA_like_2 CESA_like_ 28.8 4.4E+02 0.0095 23.8 13.6 120 186-308 75-205 (241)
67 cd06913 beta3GnTL1_like Beta 1 28.5 4.2E+02 0.009 23.4 11.7 44 187-230 76-119 (219)
68 PRK10018 putative glycosyl tra 26.0 5.9E+02 0.013 24.4 11.5 34 187-220 77-110 (279)
69 PF04508 Pox_A_type_inc: Viral 25.3 1.1E+02 0.0024 18.6 2.9 19 53-71 3-21 (23)
70 PLN03182 xyloglucan 6-xylosylt 25.2 4.7E+02 0.01 27.1 9.2 93 115-208 106-210 (429)
71 PF09258 Glyco_transf_64: Glyc 24.9 79 0.0017 30.0 3.5 101 194-300 74-180 (247)
72 PF07507 WavE: WavE lipopolysa 22.0 1.4E+02 0.003 29.6 4.7 64 182-253 86-161 (311)
73 PF03490 Varsurf_PPLC: Variant 21.4 54 0.0012 23.7 1.2 26 119-147 9-34 (51)
74 PRK14716 bacteriophage N4 adso 21.2 9.9E+02 0.021 25.3 15.2 111 195-309 158-283 (504)
No 1
>PLN03193 beta-1,3-galactosyltransferase; Provisional
Probab=100.00 E-value=1.1e-100 Score=756.46 Aligned_cols=367 Identities=86% Similarity=1.388 Sum_probs=341.3
Q ss_pred CCCCcccccccccCccccccccccccCCcccc---ccccCChhhHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhccccc
Q 017688 1 MWTVPEVRDVSRGAGFEDEKLKLVSEGCDSVM---KNVKREPAEILGEVSKTHHAIQALDKTISNLEMELAAARATQESI 77 (367)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~el~~~~~~~~~~ 77 (367)
||++||++++.+++++++++++++++||++|+ |..+++++|||+||++||+|||+|+|+|+.||||||+|++.+..+
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~t~~~~~~~~~~~~~le~el~~~~~~~~~~ 118 (408)
T PLN03193 39 MWTIPESKGISRTTVTEAERLKLVSEGCDPKTLYQKEVKRDSKDIIGEVSKTHNAIQTLDKTISNLEMELAAARAAQESI 118 (408)
T ss_pred cccCCccccccccccchhhhhhhhccccccccccccccccchhHHHHHHhhHHHHHHHHhhhhhHHhHHHHHHHhhhhhh
Confidence 79999999998888899999999999999877 666789999999999999999999999999999999999977666
Q ss_pred cCCCCCCcccccccccCCCceeEEEEEECCCCCHHHHHHHHHHhhcCCcccccccccCCeEEEEEeccCCCCCchhHHHH
Q 017688 78 INGSPLSDNLKINELKGKRKYLMVVGINSAFSSRKRRDSVRATWMPQGDKRKKLEEEKGIVMRFVIGHSATSGGILDRAI 157 (367)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~llI~V~S~p~~~~rR~aIR~TW~~~~~~l~~l~~~~~v~~~FvlG~s~~~~~~~~~~L 157 (367)
.++.|.+++....+...+++++|||+|+|+|+|++||++||+|||+.++.+.+++...+++++||+|++.++++.++++|
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~LvIgI~Sap~~~~RR~AIR~TWg~~~~~~~kle~~~gv~vrFVIG~s~~~~~~ldr~L 198 (408)
T PLN03193 119 LNGSPISEDLKKTQSSGKRRYLMVVGINTAFSSRKRRDSVRATWMPQGEKRKKLEEEKGIIIRFVIGHSATSGGILDRAI 198 (408)
T ss_pred ccCCCccccccccCCCCcceEEEEEEEeCCCCCHHHHHHHHHHHcCCcccccccccCCcEEEEEEeecCCCcchHHHHHH
Confidence 66666544333334455778999999999999999999999999998877777777899999999999987667899999
Q ss_pred HHHhhhCCCEEEecccccCCchhHHHHHHHHHHhhcCCccEEEEeCCceeecHHHHHHHHhhcCCCCceEEEEeccCccc
Q 017688 158 EAEDKKHGDFLRLEHVEGYLELSAKTKIFFATAVALWDADFYVKVDDDVHVNIATLGATLARHRSKPRVYIGCMKSGPVL 237 (367)
Q Consensus 158 ~~E~~~~~Dil~ldf~Dsy~nLt~Kt~~~~~wa~~~~~a~fvlKvDDDvfVn~~~L~~~L~~~~~~~~ly~G~~~~~pv~ 237 (367)
++|+++|||||++||+|+|.|||+||+++|+|+.++++++||||+|||+|||+++|+.+|..++.++++|+|||+++|++
T Consensus 199 e~Ea~~ygDIL~lDfvDsY~NLT~KTl~~f~wA~~~~dAkF~mK~DDDvfVnv~~L~~~L~~~~~~~rlYiG~m~~gPvr 278 (408)
T PLN03193 199 EAEDRKHGDFLRLDHVEGYLELSAKTKTYFATAVAMWDADFYVKVDDDVHVNIATLGETLVRHRKKPRVYIGCMKSGPVL 278 (408)
T ss_pred HHHHHHhCCEEEEecccccccchHHHHHHHHHHHHcCCCeEEEEcCCCceEcHHHHHHHHHhcCCCCCEEEEecccCccc
Confidence 99999999999999999999999999999999999999999999999999999999999998877788999999989887
Q ss_pred ccCCCccccccccccCCCCCccCcCcccCcceecHHHHHHHHHhccccCCCCCchHHHHHHHhcCCCeeeCCCCcccCCC
Q 017688 238 AQKGVRYHEPEYWKFGEEGNKYFRHATGQLYAISKDLASYISINQHVLHKFANEDVSLGSWFIGLDAEHIDDRRLCCGTP 317 (367)
Q Consensus 238 r~~~~K~yvp~~~~~g~~~~~Yp~y~~G~gYvlS~dla~~I~~~~~~l~~~~~EDV~vG~~l~~l~v~~~~~~~f~~~~~ 317 (367)
.+++.|||+|++|+||++++.|||||+|+|||||+|+|++|+.++..++.|++|||++|+||.+|+|+|+|+++|||+++
T Consensus 279 ~~~~~ky~epe~w~~~~~~~~YPpyAsG~gYVlS~DLa~~I~~n~~~L~~y~~EDV~vG~Wl~~L~V~~vdd~~fcc~~~ 358 (408)
T PLN03193 279 SQKGVRYHEPEYWKFGENGNKYFRHATGQLYAISKDLASYISINQHVLHKYANEDVSLGSWFIGLDVEHIDDRRLCCGTP 358 (408)
T ss_pred cCCCCcCcCcccccccCccccCCCCCCcceEEehHHHHHHHHhChhhhcccCcchhhhhhHhccCCceeeecccccCCCC
Confidence 77788999999999998899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccccCCcccccccccccCccCchHHHHHHHhhCchhhHhhhhhcC
Q 017688 318 PDCEWKAQAGNVCVASFDWSCSGICRSAERMKEVHRRCGEGENALWSAAF 367 (367)
Q Consensus 318 ~~~~wk~~~~~~C~~~~~~~~~gi~~~~~~m~~vH~~~p~~~~~~w~~~~ 367 (367)
|+|+||++++++|+++|+|+|+|||+++++|.++|++|+|+..++|++.|
T Consensus 359 ~~C~~~~~~~~~c~~~~~~~csg~c~~~~~~~~~h~~c~~~~~~~~~~~~ 408 (408)
T PLN03193 359 PDCEWKAQAGNICVASFDWSCSGICRSADRIKEVHRRCGEGENALWSATF 408 (408)
T ss_pred ccccccccCCCeeEEEecccCcccCCHHHHHHHHHHhcCCCcccceeecC
Confidence 99999999999999999999999999999999999999999999999876
No 2
>KOG2288 consensus Galactosyltransferases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.7e-71 Score=513.84 Aligned_cols=265 Identities=68% Similarity=1.159 Sum_probs=255.0
Q ss_pred CCceeEEEEEECCCCCHHHHHHHHHHhhcCCcccccccccCCeEEEEEeccCCCCCchhHHHHHHHhhhCCCEEEec-cc
Q 017688 95 KRKYLMVVGINSAFSSRKRRDSVRATWMPQGDKRKKLEEEKGIVMRFVIGHSATSGGILDRAIEAEDKKHGDFLRLE-HV 173 (367)
Q Consensus 95 ~~~~~llI~V~S~p~~~~rR~aIR~TW~~~~~~l~~l~~~~~v~~~FvlG~s~~~~~~~~~~L~~E~~~~~Dil~ld-f~ 173 (367)
+++++++|+|.|++++.+||+++|+||++.++.+++++.+++|.++|+||+ .+.+++++++|++|+++|+|+|.+| ++
T Consensus 8 ~~k~l~vigI~T~f~s~~RR~~vR~TWmp~~~~l~rle~e~gv~~RFvIG~-~~~g~~~~r~ie~E~~~~~DfllLd~h~ 86 (274)
T KOG2288|consen 8 RRKVLLVIGINTAFSSRKRRDSVRQTWMPSGEGLKRLEEEKGVIIRFVIGT-ATLGASLDRALEEENAQHGDFLLLDRHE 86 (274)
T ss_pred ccceEEEEEeecccchhhhHHHHHHhhcCCccchhhhccccceEEEEEecc-CCccHHHHHHHHHHHHhcCCeEeechhH
Confidence 678999999999999999999999999999999999999999999999999 4457899999999999999999999 99
Q ss_pred ccCCchhHHHHHHHHHHhhcCCccEEEEeCCceeecHHHHHHHHhhcCCCCceEEEEeccCcccccCCCccccccccccC
Q 017688 174 EGYLELSAKTKIFFATAVALWDADFYVKVDDDVHVNIATLGATLARHRSKPRVYIGCMKSGPVLAQKGVRYHEPEYWKFG 253 (367)
Q Consensus 174 Dsy~nLt~Kt~~~~~wa~~~~~a~fvlKvDDDvfVn~~~L~~~L~~~~~~~~ly~G~~~~~pv~r~~~~K~yvp~~~~~g 253 (367)
|+|.+|+.||+.+|.+|+++|+++||+|+|||+|||++.|...|++++.++++|+|||++|||+.+|++|||+|+ |+||
T Consensus 87 E~Y~~Ls~Kt~~~f~~A~~~~daeFyvKvDDDv~v~l~~L~~~la~~r~~pr~YiGcmksg~v~~~~~~kw~Epe-Wkfg 165 (274)
T KOG2288|consen 87 EAYEELSAKTKAFFSAAVAHWDAEFYVKVDDDVYVRLARLGTLLARERSHPRLYIGCMKSGPVLTQPGGKWYEPE-WKFG 165 (274)
T ss_pred HHHHHHHHHHHHHHHHHHHhccceEEEEccccceecHHHHHHHHHhhccCCceEEEEecCCccccCCCCcccChh-hhcC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred CCCCccCcCcccCcceecHHHHHHHHHhccccCCCCCchHHHHHHHhcCCCeeeCCCCcccCCCCCcccccccCCccccc
Q 017688 254 EEGNKYFRHATGQLYAISKDLASYISINQHVLHKFANEDVSLGSWFIGLDAEHIDDRRLCCGTPPDCEWKAQAGNVCVAS 333 (367)
Q Consensus 254 ~~~~~Yp~y~~G~gYvlS~dla~~I~~~~~~l~~~~~EDV~vG~~l~~l~v~~~~~~~f~~~~~~~~~wk~~~~~~C~~~ 333 (367)
+.++ |+||+.|++|+||++||.+|+.|+..++.|.+|||++|.||++|+|+|+|++++||+++ |++.+++|.++
T Consensus 166 ~~g~-YfrhA~G~~YvlS~dLa~yi~in~~lL~~y~nEDVSlGaW~~gldV~h~dd~rlC~~~~-----~~~~~~~~~~~ 239 (274)
T KOG2288|consen 166 DNGN-YFRHATGGGYVLSKDLATYISINRQLLHKYANEDVSLGAWMIGLDVEHVDDPRLCCSTP-----KALAGMVCAAS 239 (274)
T ss_pred cccc-cchhccCceEEeeHHHHHHHHHhHHHHHhhccCCcccceeeeeeeeeEecCCcccccch-----hhhccceeeee
Confidence 8777 99999999999999999999999999999999999999999999999999999999863 67789999999
Q ss_pred ccccccCccCchHHHHHHHhhCchhhHhhhhhcC
Q 017688 334 FDWSCSGICRSAERMKEVHRRCGEGENALWSAAF 367 (367)
Q Consensus 334 ~~~~~~gi~~~~~~m~~vH~~~p~~~~~~w~~~~ 367 (367)
|+|+|+|+|+++.+|..+|.+|.++..+.|.+.|
T Consensus 240 ~~~kcsglC~~~~rm~~~h~~~~~~~~~~~~~~~ 273 (274)
T KOG2288|consen 240 FDWKCSGLCKSEDRMLEVHKYDWEGKPATCCSRF 273 (274)
T ss_pred ecccccccCchHHHHhHHHHhhccCCCcccCccc
Confidence 9999999999999999999999999999998754
No 3
>PLN03133 beta-1,3-galactosyltransferase; Provisional
Probab=100.00 E-value=3.5e-54 Score=447.61 Aligned_cols=234 Identities=23% Similarity=0.346 Sum_probs=203.8
Q ss_pred CCceeEEEEEECCCCCHHHHHHHHHHhhcCCcccccccccCCeEEEEEeccCCCCCchhHHHHHHHhhhCCCEEEecccc
Q 017688 95 KRKYLMVVGINSAFSSRKRRDSVRATWMPQGDKRKKLEEEKGIVMRFVIGHSATSGGILDRAIEAEDKKHGDFLRLEHVE 174 (367)
Q Consensus 95 ~~~~~llI~V~S~p~~~~rR~aIR~TW~~~~~~l~~l~~~~~v~~~FvlG~s~~~~~~~~~~L~~E~~~~~Dil~ldf~D 174 (367)
.++++|||+|+|+|+|++||+|||+|||+... ..+..++++|++|.+. ++.++.+|+.|+++||||||+||+|
T Consensus 382 ~~~~~LlI~V~Sap~nf~rR~AIR~TWg~~~~-----~~~~~v~~rFvVG~s~--n~~l~~~L~~Ea~~ygDIIq~dF~D 454 (636)
T PLN03133 382 KKPLDLFIGVFSTANNFKRRMAVRRTWMQYDA-----VRSGAVAVRFFVGLHK--NQMVNEELWNEARTYGDIQLMPFVD 454 (636)
T ss_pred CCceEEEEEEeCCcccHHHHHHHHHhhccccc-----cCCCceEEEEEEecCC--cHHHHHHHHHHHHHcCCeEEEeeec
Confidence 46799999999999999999999999998642 2345689999999986 3578899999999999999999999
Q ss_pred cCCchhHHHHHHHHHHhhcCCccEEEEeCCceeecHHHHHHHHhhcCCCCceEEEEecc-CcccccCCCccccccccccC
Q 017688 175 GYLELSAKTKIFFATAVALWDADFYVKVDDDVHVNIATLGATLARHRSKPRVYIGCMKS-GPVLAQKGVRYHEPEYWKFG 253 (367)
Q Consensus 175 sy~nLt~Kt~~~~~wa~~~~~a~fvlKvDDDvfVn~~~L~~~L~~~~~~~~ly~G~~~~-~pv~r~~~~K~yvp~~~~~g 253 (367)
+|+|||+||++++.|+..|++++||||+|||+|||+++|+++|......+++|+|++.. ..|+|++.+|||+|...|
T Consensus 455 sY~NLTlKtl~~~~wa~~c~~akFilK~DDDvFVnv~~Ll~~L~~~~~~~~Ly~G~v~~~~~PiRd~~sKWYVs~~ey-- 532 (636)
T PLN03133 455 YYSLITWKTLAICIFGTEVVSAKYVMKTDDDAFVRVDEVLASLKRTNVSHGLLYGLINSDSQPHRNPDSKWYISPEEW-- 532 (636)
T ss_pred hhhhhHHHHHHHHHHHHhCCCceEEEEcCCceEEcHHHHHHHHHhcCCCCceEEEEeccCCCcccCCCCCCCCCHHHC--
Confidence 99999999999999998899999999999999999999999998776677899999974 577899999999998777
Q ss_pred CCCCccCcCcccCcceecHHHHHHHHHhc--cccCCCCCchHHHHHHHh-----cCCCeeeCCCCcccCCCCCccccccc
Q 017688 254 EEGNKYFRHATGQLYAISKDLASYISINQ--HVLHKFANEDVSLGSWFI-----GLDAEHIDDRRLCCGTPPDCEWKAQA 326 (367)
Q Consensus 254 ~~~~~Yp~y~~G~gYvlS~dla~~I~~~~--~~l~~~~~EDV~vG~~l~-----~l~v~~~~~~~f~~~~~~~~~wk~~~ 326 (367)
|.+.|||||+|+|||||+++|++|+.++ ..++.|++||||+|+|++ ++.+.+.++.+||+.
T Consensus 533 -p~~~YPpYasG~gYVlS~Dla~~L~~~s~s~~l~~f~lEDVyvGi~l~~l~k~gl~v~~~~~~r~~~~----------- 600 (636)
T PLN03133 533 -PEETYPPWAHGPGYVVSRDIAKEVYKRHKEGRLKMFKLEDVAMGIWIAEMKKEGLEVKYENDGRIYNE----------- 600 (636)
T ss_pred -CCCCCCCCCCcCEEEEcHHHHHHHHHhhhhcccCcCChhhHhHHHHHHHhcccCCCceeeCCCcccCC-----------
Confidence 7889999999999999999999999865 579999999999999985 567778888888642
Q ss_pred CCcccccccccccCccCchHHHHHHHhhCchhhHhhhhh
Q 017688 327 GNVCVASFDWSCSGICRSAERMKEVHRRCGEGENALWSA 365 (367)
Q Consensus 327 ~~~C~~~~~~~~~gi~~~~~~m~~vH~~~p~~~~~~w~~ 365 (367)
.|... +..+|...|++|..+|+.
T Consensus 601 --~C~~~--------------~i~~H~~sP~eM~~lW~~ 623 (636)
T PLN03133 601 --GCKDG--------------YVVAHYQSPREMLCLWQK 623 (636)
T ss_pred --cCCCC--------------eEEEecCCHHHHHHHHHH
Confidence 36431 244677788888888875
No 4
>KOG2287 consensus Galactosyltransferases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=6.2e-53 Score=417.48 Aligned_cols=239 Identities=23% Similarity=0.322 Sum_probs=213.2
Q ss_pred ceeEEEEEECCCCCHHHHHHHHHHhhcCCcccccccccCCeEEEEEeccCCCCCchhHHHHHHHhhhCCCEEEecccccC
Q 017688 97 KYLMVVGINSAFSSRKRRDSVRATWMPQGDKRKKLEEEKGIVMRFVIGHSATSGGILDRAIEAEDKKHGDFLRLEHVEGY 176 (367)
Q Consensus 97 ~~~llI~V~S~p~~~~rR~aIR~TW~~~~~~l~~l~~~~~v~~~FvlG~s~~~~~~~~~~L~~E~~~~~Dil~ldf~Dsy 176 (367)
.++++|+|+|+++|++||++||+|||+... ..+..++++|++|.+++.+ .+++.|.+|++.|||||++||.|+|
T Consensus 94 ~~~lLl~V~S~~~~farR~aiR~TW~~~~~-----v~~~~v~~~FLvG~~~~~~-~~~~~l~~Ea~~ygDIi~~df~Dty 167 (349)
T KOG2287|consen 94 PPELLLLVKSAPDNFARRNAIRKTWGNENN-----VRGGRVRVLFLVGLPSNED-KLNKLLADEARLYGDIIQVDFEDTY 167 (349)
T ss_pred CceEEEEEecCCCCHHHHHHHHHHhcCccc-----cCCCcEEEEEEecCCCcHH-HHHHHHHHHHHHhCCEEEEecccch
Confidence 489999999999999999999999999863 3567899999999998644 6689999999999999999999999
Q ss_pred CchhHHHHHHHHHHhh-cCCccEEEEeCCceeecHHHHHHHHhhc-CCCCceEEEEecc-CcccccCCCccccccccccC
Q 017688 177 LELSAKTKIFFATAVA-LWDADFYVKVDDDVHVNIATLGATLARH-RSKPRVYIGCMKS-GPVLAQKGVRYHEPEYWKFG 253 (367)
Q Consensus 177 ~nLt~Kt~~~~~wa~~-~~~a~fvlKvDDDvfVn~~~L~~~L~~~-~~~~~ly~G~~~~-~pv~r~~~~K~yvp~~~~~g 253 (367)
.|||+||++++.|+.. |++++|++|+|||+|||+++|+++|..+ .+.+.+|+|.+.. .+|+|++.+|||+|+..|
T Consensus 168 ~nltlKtl~~l~w~~~~cp~akfi~K~DDDvfv~~~~L~~~L~~~~~~~~~~~~G~v~~~~~p~R~~~~KwyVp~~~y-- 245 (349)
T KOG2287|consen 168 FNLTLKTLAILLWGVSKCPDAKFILKIDDDVFVNPDNLLEYLDKLNDPSSDLYYGRVIQNAPPIRDKTSKWYVPESEY-- 245 (349)
T ss_pred hchHHHHHHHHHHHHhcCCcceEEEeccCceEEcHHHHHHHHhccCCCCcceEEEeecccCCCCCCCCCCCccCHHHC--
Confidence 9999999999999998 9999999999999999999999999999 7888999999875 588899999999999777
Q ss_pred CCCCccCcCcccCcceecHHHHHHHHHhccccCCCCCchHHHHHHHhcC-CCeeeCCCCcccCCCCCcccccccCCcccc
Q 017688 254 EEGNKYFRHATGQLYAISKDLASYISINQHVLHKFANEDVSLGSWFIGL-DAEHIDDRRLCCGTPPDCEWKAQAGNVCVA 332 (367)
Q Consensus 254 ~~~~~Yp~y~~G~gYvlS~dla~~I~~~~~~l~~~~~EDV~vG~~l~~l-~v~~~~~~~f~~~~~~~~~wk~~~~~~C~~ 332 (367)
+...||+||+|+|||||+++|+.|+.++..++.+++|||++|+|++.. |+.++++.+|.... ...++|.+
T Consensus 246 -~~~~YP~Y~sG~gYvis~~~a~~l~~~s~~~~~~~iEDV~~g~~l~~~~gi~~~~~~~~~~~~--------~~~~~~~~ 316 (349)
T KOG2287|consen 246 -PCSVYPPYASGPGYVISGDAARRLLKASKHLKFFPIEDVFVGGCLAEDLGIKPVNHPGFFEIP--------LSFDPCCY 316 (349)
T ss_pred -CCCCCCCcCCCceeEecHHHHHHHHHHhcCCCccchHHHHHHHHHHHhcCCCcccCccccccc--------ccCCCCcc
Confidence 778999999999999999999999999999999999999999999876 99999887754321 13456665
Q ss_pred cccccccCccCchHHHHHHHhhCchhhHhhhhh
Q 017688 333 SFDWSCSGICRSAERMKEVHRRCGEGENALWSA 365 (367)
Q Consensus 333 ~~~~~~~gi~~~~~~m~~vH~~~p~~~~~~w~~ 365 (367)
+.+..+|...|++|..+|+.
T Consensus 317 -------------~~~~~~H~~~p~e~~~~w~~ 336 (349)
T KOG2287|consen 317 -------------RDLLAVHRLSPNEMIYLWKK 336 (349)
T ss_pred -------------cceEEEecCCHHHHHHHHHH
Confidence 55777888888888888864
No 5
>PF01762 Galactosyl_T: Galactosyltransferase; InterPro: IPR002659 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 31 (GH31 from CAZY) comprises enzymes with a number of known activities; N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase (2.4.1.149 from EC); beta-1,3-galactosyltransferase (2.4.1 from EC); fucose-specific beta-1,3-N-acetylglucosaminyltransferase (2.4.1 from EC); globotriosylceramide beta-1,3-GalNAc transferase (2.4.1.79 from EC) [, ].; GO: 0008378 galactosyltransferase activity, 0006486 protein glycosylation, 0016020 membrane
Probab=100.00 E-value=1.4e-48 Score=356.12 Aligned_cols=191 Identities=29% Similarity=0.379 Sum_probs=172.0
Q ss_pred HHHHHHHHHhhcCCcccccccccCCeEEEEEeccCCCCCchhHHHHHHHhhhCCCEEEecccccCCchhHHHHHHHHHHh
Q 017688 112 KRRDSVRATWMPQGDKRKKLEEEKGIVMRFVIGHSATSGGILDRAIEAEDKKHGDFLRLEHVEGYLELSAKTKIFFATAV 191 (367)
Q Consensus 112 ~rR~aIR~TW~~~~~~l~~l~~~~~v~~~FvlG~s~~~~~~~~~~L~~E~~~~~Dil~ldf~Dsy~nLt~Kt~~~~~wa~ 191 (367)
+||++||+|||+... ....+++++||+|.+.+.+..++.+|.+|+++|+||||+||.|+|.|||+||+++|+|+.
T Consensus 1 ~rR~~IR~TW~~~~~-----~~~~~~~~~FvvG~~~~~~~~~~~~l~~E~~~y~Dil~~d~~D~y~nlt~K~~~~~~w~~ 75 (195)
T PF01762_consen 1 ERRQAIRETWGNQRN-----FKGVRVKVVFVVGESPNSDSDLQEALQEEAEKYGDILQGDFVDSYRNLTLKTLAGLKWAS 75 (195)
T ss_pred ChHHHHHHHHhcccc-----cCCCcEEEEEEEecCCCCcHHHHHHhhhhhhhcCceEeeecccccchhhHHHHHHHHHHH
Confidence 599999999999863 235789999999999855667888999999999999999999999999999999999999
Q ss_pred h-cCCccEEEEeCCceeecHHHHHHHHhhc--CCC-CceEEEEeccCcccccCCCccccccccccCCCCCccCcCcccCc
Q 017688 192 A-LWDADFYVKVDDDVHVNIATLGATLARH--RSK-PRVYIGCMKSGPVLAQKGVRYHEPEYWKFGEEGNKYFRHATGQL 267 (367)
Q Consensus 192 ~-~~~a~fvlKvDDDvfVn~~~L~~~L~~~--~~~-~~ly~G~~~~~pv~r~~~~K~yvp~~~~~g~~~~~Yp~y~~G~g 267 (367)
+ |++++||+|+|||+|||+++|.++|... ... ..+|.|++..++++|++.+|||+|+..| +.+.|||||+|+|
T Consensus 76 ~~c~~~~~v~k~DDD~~vn~~~l~~~L~~~~~~~~~~~~~g~~~~~~~~~r~~~~kw~v~~~~y---~~~~yP~y~~G~~ 152 (195)
T PF01762_consen 76 KHCPNAKYVLKVDDDVFVNPDRLVSFLKSLKQDPSKNSIYGGCIKNGPPIRDPSSKWYVSEEEY---PDDYYPPYCSGGG 152 (195)
T ss_pred hhCCchhheeecCcEEEEehHHhhhhhhhcccCccccccccccccCCccccccccCceeeeeec---ccccCCCcCCCCe
Confidence 8 7889999999999999999999999987 333 3445555667788899999999998777 6789999999999
Q ss_pred ceecHHHHHHHHHhccccCCCCCchHHHHHHHhcCCCeeeCCC
Q 017688 268 YAISKDLASYISINQHVLHKFANEDVSLGSWFIGLDAEHIDDR 310 (367)
Q Consensus 268 YvlS~dla~~I~~~~~~l~~~~~EDV~vG~~l~~l~v~~~~~~ 310 (367)
|+||+++|+.|+.++..++.+++|||++|+|+.+++++++|++
T Consensus 153 yvls~~~v~~i~~~~~~~~~~~~eDv~iGi~~~~~~i~~~~~~ 195 (195)
T PF01762_consen 153 YVLSSDVVKRIYKASSHTPFFPLEDVFIGILAEKLGIKPIHDP 195 (195)
T ss_pred EEecHHHHHHHHHHhhcCCCCCchHHHHHHHHHHCCCCccCCC
Confidence 9999999999999999999999999999999999999999864
No 6
>PTZ00210 UDP-GlcNAc-dependent glycosyltransferase; Provisional
Probab=100.00 E-value=2.2e-33 Score=274.64 Aligned_cols=193 Identities=20% Similarity=0.283 Sum_probs=160.2
Q ss_pred ccCCCceeEEEEEECCCCC--HHHHHHHHHHhhcCCccc-ccccccCCeEEEEEeccCCCCCchhHHHHHHHhhhCCCEE
Q 017688 92 LKGKRKYLMVVGINSAFSS--RKRRDSVRATWMPQGDKR-KKLEEEKGIVMRFVIGHSATSGGILDRAIEAEDKKHGDFL 168 (367)
Q Consensus 92 ~~~~~~~~llI~V~S~p~~--~~rR~aIR~TW~~~~~~l-~~l~~~~~v~~~FvlG~s~~~~~~~~~~L~~E~~~~~Dil 168 (367)
....++.++++||.|..++ +.||++.|+||.+-.... +...-...+.++|++|..++.+.+.+++|.+|+++|||||
T Consensus 74 ~w~~~~~lv~~Gi~S~d~~~r~~rR~lqr~t~w~y~~va~~~n~ftg~~lv~y~l~~H~~~~~~~~~~L~eEA~~~~DIV 153 (382)
T PTZ00210 74 VWKAQRFLAVLGIPSVDNSERSRRRDLQRQTCWKYSGVATRSNNFSGSLLPLYLLAPHQSNSYLISHSLKEEAARTHDII 153 (382)
T ss_pred HhccCCceEEEeccCCCchHHHHHHHHHHhhhhcchhhhhhccCCchhhhhhhhhccCCccchhhhHHHHHHHHHhCCEE
Confidence 4567889999999999998 899999999999875421 1111134567899999999877799999999999999999
Q ss_pred Eecc------------------cccCCchhHHHHHHHHHHhh-cCCccEEEEeCCceeecHHHHHHHHhhcCCCCceEEE
Q 017688 169 RLEH------------------VEGYLELSAKTKIFFATAVA-LWDADFYVKVDDDVHVNIATLGATLARHRSKPRVYIG 229 (367)
Q Consensus 169 ~ldf------------------~Dsy~nLt~Kt~~~~~wa~~-~~~a~fvlKvDDDvfVn~~~L~~~L~~~~~~~~ly~G 229 (367)
++|| .|++.|||+||+++|+|+.. ||+++|++|+|||+|||+++++++|+.. ++..+|+|
T Consensus 154 ilpf~d~~~tTnKkiG~~g~WG~e~e~~mT~KT~l~~~wA~~~cP~a~YImKgDDDvFVrVp~lL~~Lr~~-prr~LY~G 232 (382)
T PTZ00210 154 TLPTNDVSPSTRKKIGENGNWGIEAEVAMSRKTYLWLRFALHMFPNVSYIVKGDDDIFIRVPKYLADLRVM-PRHGLYMG 232 (382)
T ss_pred EEecccCccccccccccCCcccchhhcchhHHHHHHHHHHHHhCCCCCeEEEcCCCeEeeHHHHHHHHhhC-CCCceEEE
Confidence 9999 77778899999999999998 8899999999999999999999999665 55669999
Q ss_pred EeccC-cccccCCCccccccccccCCCCCccCcCcccCcceecHHHHHHHHHhccc--c---------------CCCCCc
Q 017688 230 CMKSG-PVLAQKGVRYHEPEYWKFGEEGNKYFRHATGQLYAISKDLASYISINQHV--L---------------HKFANE 291 (367)
Q Consensus 230 ~~~~~-pv~r~~~~K~yvp~~~~~g~~~~~Yp~y~~G~gYvlS~dla~~I~~~~~~--l---------------~~~~~E 291 (367)
.+... .+. .+.+||||+|+||+||+|+|+.|+...+. + -.+.+|
T Consensus 233 ~v~~~~~p~------------------Rd~~PpY~~G~gYvLSrDVA~~Lvs~~pl~rL~~~pys~~~~~~y~~~~~~~E 294 (382)
T PTZ00210 233 RYNYYNRIW------------------RRNQLTYVNGYCITLSRDTAQAIISYKPLERLVNMPFSMWDYFDFLDLGMFYE 294 (382)
T ss_pred eeCCCCccc------------------cCCCCCccccceeeccHHHHHHHHhhChHhHhhcCCCchHHHHHHHHhhcCch
Confidence 97631 111 12479999999999999999999987432 2 235799
Q ss_pred hHHHHHHH-hcCC
Q 017688 292 DVSLGSWF-IGLD 303 (367)
Q Consensus 292 DV~vG~~l-~~l~ 303 (367)
|+.+|.+| .++.
T Consensus 295 DiMvG~vLr~~~k 307 (382)
T PTZ00210 295 DVMVGMILREKVV 307 (382)
T ss_pred HHHHHHHHHHhcC
Confidence 99999999 4553
No 7
>PF02434 Fringe: Fringe-like; InterPro: IPR003378 The Notch receptor is a large, cell surface transmembrane protein involved in a wide variety of developmental processes in higher organisms []. It becomes activated when its extracellular region binds to ligands located on adjacent cells. Much of this extracellular region is composed of EGF-like repeats, many of which can be O-fucosylated. A number of these O-fucosylated repeats can in turn be further modified by the action of a beta-1,3-N-acetylglucosaminyltransferase enzyme known as Fringe []. Fringe potentiates the activation of Notch by Delta ligands, while inhibiting activation by Serrate/Jagged ligands. This regulation of Notch signalling by Fringe is important in many processes []. Four distinct Fringe proteins have so far been studied in detail; Drosophila Fringe (Dfng) and its three mammalian homologues Lunatic Fringe (Lfng), Radical Fringe (Rfng) and Manic Fringe (Mfng). Dfng, Lfng and Rfng have all been shown to play important roles in developmental processes within their host, though the phenotype of mutants can vary between species e.g. Rfng mutants are retarded in wing development in chickens, but have no obvious phenotype in mice [, , ]. Mfng mutants have not, so far, been charcterised. Biochemical studies indicate that the Fringe proteins are fucose-specific transferases requiring manganese for activity and utilising UDP-N-acetylglucosamine as a donor substrate []. The three mammalian proteins show distinct variations in their catalytic efficiencies with different substrates. Dfng is a glucosaminyltransferase that controls the response of the Notch receptor to specific ligands which is localised to the Golgi apparatus [] (not secreted as previously thought). Modification of Notch occurs through glycosylation by Dfng. This entry consists of Fringe proteins and related glycosyltransferase enzymes including: Beta-1,3-glucosyltransferase, which glucosylates O-linked fucosylglycan on thrombospondin type 1 repeat domains []. Core 1 beta1,3-galactosyltransferase 1, generates the core T antigen, which is a precursor for many extended O-glycans in glycoproteins and plays a central role in many processes, such as angiogenesis, thrombopoiesis and kidney homeostasis development []. ; GO: 0016757 transferase activity, transferring glycosyl groups, 0016020 membrane; PDB: 2J0B_A 2J0A_A.
Probab=99.80 E-value=3.4e-19 Score=169.52 Aligned_cols=192 Identities=16% Similarity=0.229 Sum_probs=100.0
Q ss_pred eeEEEEEECCCCCH-HHHHHHHHHhhcCCcccccccccCCeEEEEEeccCCCCCchhHHHHHHHhhhCCCEEEecccccC
Q 017688 98 YLMVVGINSAFSSR-KRRDSVRATWMPQGDKRKKLEEEKGIVMRFVIGHSATSGGILDRAIEAEDKKHGDFLRLEHVEGY 176 (367)
Q Consensus 98 ~~llI~V~S~p~~~-~rR~aIR~TW~~~~~~l~~l~~~~~v~~~FvlG~s~~~~~~~~~~L~~E~~~~~Dil~ldf~Dsy 176 (367)
-.|+|+|+|++++. .|-.+|++||++.+.. ..|+..... +..|... ...+++.-+...++
T Consensus 6 ~dI~i~V~T~~k~h~tR~~~I~~TW~~~~~~-----------~~~ifsd~~------d~~l~~~--~~~~l~~~~~~~~~ 66 (252)
T PF02434_consen 6 DDIFIAVKTTKKFHKTRAPAIKQTWAKRCNK-----------QTFIFSDAE------DPSLPTV--TGVHLVNPNCDAGH 66 (252)
T ss_dssp GGEEEEEE--GGGTTTTHHHHHHTGGGGSGG-----------GEEEEESS--------HHHHHH--HGGGEEE-------
T ss_pred ccEEEEEEeCHHHHHHHHHHHHHHHHhhcCC-----------ceEEecCcc------ccccccc--cccccccCCCcchh
Confidence 36889999999765 5668999999999742 234322111 2233333 23355555555555
Q ss_pred CchhHHHHHHHHHHhh-cCCccEEEEeCCceeecHHHHHHHHhhcCCCCceEEEEecc-CcccccCCCccccccccccCC
Q 017688 177 LELSAKTKIFFATAVA-LWDADFYVKVDDDVHVNIATLGATLARHRSKPRVYIGCMKS-GPVLAQKGVRYHEPEYWKFGE 254 (367)
Q Consensus 177 ~nLt~Kt~~~~~wa~~-~~~a~fvlKvDDDvfVn~~~L~~~L~~~~~~~~ly~G~~~~-~pv~r~~~~K~yvp~~~~~g~ 254 (367)
...+++.++.+.+... .++++|++++|||+||++++|+++|..+++..++|+|+... ++...-.......+
T Consensus 67 ~~~~~~~~~~~~y~~~~~~~~~Wf~~~DDDtyv~~~~L~~~L~~~~~~~~~yiG~~~~~~~~~~~~~~~~~~~------- 139 (252)
T PF02434_consen 67 CRKTLSCKMAYEYDHFLNSDKDWFCFADDDTYVNVENLRRLLSKYDPSEPIYIGRPSGDRPIEIIHRFNPNKS------- 139 (252)
T ss_dssp ------HHHHHHHHHHHHHT-SEEEEEETTEEE-HHHHHHHHTTS-TTS--EEE-EE-----------------------
T ss_pred hHHHHHHHHHHHHHhhhcCCceEEEEEeCCceecHHHHHHHHhhCCCccCEEeeeeccCccceeecccccccc-------
Confidence 4445555555444333 46899999999999999999999999999999999999753 22210000000000
Q ss_pred CCCccCcCc-ccCcceecHHHHHHHHHhc---cccCCC----CCchHHHHHHHhc-CCCeeeCCCCcccCC
Q 017688 255 EGNKYFRHA-TGQLYAISKDLASYISINQ---HVLHKF----ANEDVSLGSWFIG-LDAEHIDDRRLCCGT 316 (367)
Q Consensus 255 ~~~~Yp~y~-~G~gYvlS~dla~~I~~~~---~~l~~~----~~EDV~vG~~l~~-l~v~~~~~~~f~~~~ 316 (367)
....| .|+ +|+||+||+.++++|.... ...... ..||+.+|.|+.. |||...+.+.|+.-.
T Consensus 140 ~~~~~-~f~~GGaG~vlSr~~~~k~~~~~~~~~~~~~~~~~~~~dD~~lG~ci~~~lgv~lt~s~~fhs~~ 209 (252)
T PF02434_consen 140 KDSGF-WFATGGAGYVLSRALLKKMSPWASGCKCPSTDEKIRLPDDMTLGYCIENLLGVPLTHSPLFHSHL 209 (252)
T ss_dssp -------EE-GGG-EEEEHHHHHHHHHHHTT-TTS--TTTTTS-HHHHHHHHHHHTT---EEE-TT---SS
T ss_pred CcCce-EeeCCCeeHHHhHHHHHHHhhhcccccccCCcCCCCCcccChhhhhHHhcCCcceeechhhcccC
Confidence 01122 355 6799999999999995421 222222 3899999999987 899999999997643
No 8
>PF13334 DUF4094: Domain of unknown function (DUF4094)
Probab=99.74 E-value=1.9e-18 Score=140.66 Aligned_cols=71 Identities=61% Similarity=0.884 Sum_probs=64.3
Q ss_pred CCCCcccccccccCc-cccccccccccCCccccccccCChhhHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhh
Q 017688 1 MWTVPEVRDVSRGAG-FEDEKLKLVSEGCDSVMKNVKREPAEILGEVSKTHHAIQALDKTISNLEMELAAARA 72 (367)
Q Consensus 1 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~el~~~~~ 72 (367)
||++||++++.+.+. ..+++++++++||+.++ ..+.+++|+|+||++||++||+|||+||+||||||+||+
T Consensus 23 ~W~~pe~~~~~~~~~~~~~~~l~l~s~~c~~k~-~~~~~~~di~~eV~kTh~aIq~LdKtIS~LEMELAaARa 94 (95)
T PF13334_consen 23 MWTVPESKEISRRSSQDAEERLQLVSEDCDPKK-LKESDQRDIMGEVSKTHEAIQSLDKTISSLEMELAAARA 94 (95)
T ss_pred cccCCccccchhhhccccccccccccccccccc-cccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 799999999886555 67899999999999876 335799999999999999999999999999999999997
No 9
>KOG2246 consensus Galactosyltransferases [Carbohydrate transport and metabolism]
Probab=99.69 E-value=1.8e-16 Score=157.82 Aligned_cols=169 Identities=22% Similarity=0.303 Sum_probs=131.7
Q ss_pred CCCceeEEEEEECCCCCHH-HHHHHHHHhhcCCcccccccccCCeEEEEEe---ccCCCCCchhHHHHHHHhhhCCCEEE
Q 017688 94 GKRKYLMVVGINSAFSSRK-RRDSVRATWMPQGDKRKKLEEEKGIVMRFVI---GHSATSGGILDRAIEAEDKKHGDFLR 169 (367)
Q Consensus 94 ~~~~~~llI~V~S~p~~~~-rR~aIR~TW~~~~~~l~~l~~~~~v~~~Fvl---G~s~~~~~~~~~~L~~E~~~~~Dil~ 169 (367)
..++..+++.|.|++.+.. |-+++-+||++.++. ..|+- .... ..+. .|.
T Consensus 87 l~r~~~v~cwv~t~~~~~~~~~~~v~~TW~~rc~~-----------~~f~s~~~s~~~--------------~~f~-~v~ 140 (364)
T KOG2246|consen 87 LSRSGRVLCWVLTSPMRHVTRADAVKETWLKRCDK-----------GIFFSPTLSKDD--------------SRFP-TVY 140 (364)
T ss_pred cCCCceEEEEEEecCcCceeehhhhhcccccccCc-----------ceecCccCCCCC--------------CcCc-eee
Confidence 3567899999999988766 557999999999862 34544 3221 1122 347
Q ss_pred ecccccCCchhHHHHHHHHHHhh--cCCccEEEEeCCceeecHHHHHHHHhhcCCCCceEEEEeccCcccccCCCccccc
Q 017688 170 LEHVEGYLELSAKTKIFFATAVA--LWDADFYVKVDDDVHVNIATLGATLARHRSKPRVYIGCMKSGPVLAQKGVRYHEP 247 (367)
Q Consensus 170 ldf~Dsy~nLt~Kt~~~~~wa~~--~~~a~fvlKvDDDvfVn~~~L~~~L~~~~~~~~ly~G~~~~~pv~r~~~~K~yvp 247 (367)
.+..|+|+++..||..+|+++.+ -.+++|++|+|||||+.++||..+|..+++++++|+|+... -|.-
T Consensus 141 ~~~~~g~~~~~~ktr~~~~yv~~~~~~~~dWf~~aDDDTy~i~eNLr~~L~~yDp~~p~YiG~~~~----------~~~~ 210 (364)
T KOG2246|consen 141 YNLPDGYRSLWRKTRIAFKYVYDHILKDYDWFLKADDDTYFIMENLRYVLSKYDPEKPVYLGYRSK----------SYFQ 210 (364)
T ss_pred ccCCcchHHHHHHHHHHHHHHHHhccCCCCeEEeccCCeEEeHHHHHHHHhhcCCCCcEEeccccc----------cccc
Confidence 78899999999999999999985 37999999999999999999999999999999999999641 1111
Q ss_pred cccccCCCCCccCcCcccCcceecHHHHHHHHHhcc-----ccCCCC--CchHHHHHHHhcCCCeeeCC
Q 017688 248 EYWKFGEEGNKYFRHATGQLYAISKDLASYISINQH-----VLHKFA--NEDVSLGSWFIGLDAEHIDD 309 (367)
Q Consensus 248 ~~~~~g~~~~~Yp~y~~G~gYvlS~dla~~I~~~~~-----~l~~~~--~EDV~vG~~l~~l~v~~~~~ 309 (367)
+.| ..+|+||++|+++.+.+++... ....+. .||+-+|.||+.+||...|.
T Consensus 211 ---------~~y--~~g~ag~~ls~aa~~~la~~l~~~~~~C~~~~~~~~eD~~i~~Cl~~~GV~~~d~ 268 (364)
T KOG2246|consen 211 ---------NGY--SSGGAGYVLSFAALRRLAERLLNNEDKCPQRYPSYGEDRRIGRCLAEVGVPATDE 268 (364)
T ss_pred ---------ccc--ccCCCCcceeHHHHHHHHHHHhcchhhcccccCCchhHHHHHHHHHHhCCCccCc
Confidence 122 2478999999999988877422 233343 89999999999999887766
No 10
>PLN03153 hypothetical protein; Provisional
Probab=99.17 E-value=4.1e-10 Score=115.24 Aligned_cols=186 Identities=19% Similarity=0.166 Sum_probs=113.5
Q ss_pred ceeEEEEEECCCCCH-HHHHHHHHHhhcCCcccccccccCCeEEEEEeccCCCC--CchhHHHHHHHhhhCCCEEEeccc
Q 017688 97 KYLMVVGINSAFSSR-KRRDSVRATWMPQGDKRKKLEEEKGIVMRFVIGHSATS--GGILDRAIEAEDKKHGDFLRLEHV 173 (367)
Q Consensus 97 ~~~llI~V~S~p~~~-~rR~aIR~TW~~~~~~l~~l~~~~~v~~~FvlG~s~~~--~~~~~~~L~~E~~~~~Dil~ldf~ 173 (367)
--.++++|.++.+.. +|+..|+.+|.+..- . ..+|+....... +..+-. + ..-.|.=...+
T Consensus 121 ~~hIvF~I~~s~~~w~~R~~yik~wW~p~~~--------r--g~v~ld~~~~~~~~~~~~P~-i----~is~d~s~f~y- 184 (537)
T PLN03153 121 LNHIMFGIAGSSQLWKRRKELVRLWWRPNQM--------R--GHVWLEEQVSPEEGDDSLPP-I----MVSEDTSRFRY- 184 (537)
T ss_pred cccEEEEEEEchhhhhhhhhhhhhhcCcccc--------e--eEEEecccCCCCCCcCCCCC-E----EeCCCcccccc-
Confidence 346888888887755 577899999997521 1 134544332210 000000 0 00000000000
Q ss_pred ccCCchhHH--HHHHHHHHhh--cCCccEEEEeCCceeecHHHHHHHHhhcCCCCceEEEEeccCcccccCCCccccccc
Q 017688 174 EGYLELSAK--TKIFFATAVA--LWDADFYVKVDDDVHVNIATLGATLARHRSKPRVYIGCMKSGPVLAQKGVRYHEPEY 249 (367)
Q Consensus 174 Dsy~nLt~K--t~~~~~wa~~--~~~a~fvlKvDDDvfVn~~~L~~~L~~~~~~~~ly~G~~~~~pv~r~~~~K~yvp~~ 249 (367)
+...+.... +..+...+.. .++++||+++|||||+.+++|+..|..++++++.|+|..... ....
T Consensus 185 ~~~~Gh~sa~rI~rmv~et~~~~~pd~kWfVf~DDDTyf~~~NLv~~Ls~YDptkp~YIGs~Se~-----------~~qn 253 (537)
T PLN03153 185 TNPTGHPSGLRISRIVLESFRLGLPDVRWFVLGDDDTIFNADNLVAVLSKYDPSEMVYVGGPSES-----------HSAN 253 (537)
T ss_pred cCCCCcHHHHHHHHHHHHHHHhhCCCCCEEEEecCCccccHHHHHHHHhhcCCCCCEEecccccc-----------cccc
Confidence 111122221 1112333333 589999999999999999999999999999999999986421 0000
Q ss_pred cccCCCCCccCcC-cccCcceecHHHHHHHHHhcc-ccCC---CCCchHHHHHHHhcCCCeeeCCCCcccC
Q 017688 250 WKFGEEGNKYFRH-ATGQLYAISKDLASYISINQH-VLHK---FANEDVSLGSWFIGLDAEHIDDRRLCCG 315 (367)
Q Consensus 250 ~~~g~~~~~Yp~y-~~G~gYvlS~dla~~I~~~~~-~l~~---~~~EDV~vG~~l~~l~v~~~~~~~f~~~ 315 (367)
-+|+ | .| -+|+||+||+.+++.|..... .... ..-+|.-||.|+..+||...+.++|+..
T Consensus 254 ~~f~-----~-~fA~GGAG~~LSrPLae~L~~~~d~C~~rY~~~~~gD~rL~~CL~elGV~LT~~~gfhQ~ 318 (537)
T PLN03153 254 SYFS-----H-NMAFGGGGIAISYPLAEALSRILDDCLDRYPKLYGSDDRLHACITELGVPLSREPGFHQW 318 (537)
T ss_pred cccc-----c-ccccCCceEEEcHHHHHHHHHHhhhhhhhcccCCCcHHHHHHHHHHcCCCceecCCcccc
Confidence 1111 1 13 389999999999999987532 2222 2458889999999999988888888764
No 11
>KOG3708 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.61 E-value=0.00011 Score=75.32 Aligned_cols=200 Identities=17% Similarity=0.187 Sum_probs=122.3
Q ss_pred eeEEEEEECCCCCHHHHHHHHHHhhcCCcccccccccCCeEEEEEeccCCCCCchhHHHHHHHhhhCCCEEEecccccCC
Q 017688 98 YLMVVGINSAFSSRKRRDSVRATWMPQGDKRKKLEEEKGIVMRFVIGHSATSGGILDRAIEAEDKKHGDFLRLEHVEGYL 177 (367)
Q Consensus 98 ~~llI~V~S~p~~~~rR~aIR~TW~~~~~~l~~l~~~~~v~~~FvlG~s~~~~~~~~~~L~~E~~~~~Dil~ldf~Dsy~ 177 (367)
-.|+++|+|. ..---+|-.|=+..-. ++.|+++.+...+ |.-++..+--|.
T Consensus 26 Erl~~aVmte---~tlA~a~NrT~ahhvp-----------rv~~F~~~~~i~~---------------~~a~~~~vs~~d 76 (681)
T KOG3708|consen 26 ERLMAAVMTE---STLALAINRTLAHHVP-----------RVHLFADSSRIDN---------------DLAQLTNVSPYD 76 (681)
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHhhcc-----------eeEEeeccccccc---------------cHhhccccCccc
Confidence 3566778872 2556678788776542 4667777665321 222223333333
Q ss_pred chhHHH-HHHHHHHhh--cCCccEEEEeCCceeecHHHHHHHHhhcCCCCceEEEEeccCcccccCCCccccccccccCC
Q 017688 178 ELSAKT-KIFFATAVA--LWDADFYVKVDDDVHVNIATLGATLARHRSKPRVYIGCMKSGPVLAQKGVRYHEPEYWKFGE 254 (367)
Q Consensus 178 nLt~Kt-~~~~~wa~~--~~~a~fvlKvDDDvfVn~~~L~~~L~~~~~~~~ly~G~~~~~pv~r~~~~K~yvp~~~~~g~ 254 (367)
.-..|+ .+.+.++.+ .-++||++-+-|+||||...|++++....-+.++|+|.-.. -|
T Consensus 77 ~r~~~~~s~vl~~l~~~~~~~YDwFll~~D~tYv~a~~L~~l~~hmsin~dlymGEe~~------------------~g- 137 (681)
T KOG3708|consen 77 LRGQKTHSMVLGLLFNMVHNNYDWFLLAKDSTYVNAFVLLRLIDHMSINEDLYMGEEAE------------------DG- 137 (681)
T ss_pred cCccccHHHHHHHHHHhhccccceEEEecCcceecHHHHHHHHhhcccccccccchhhh------------------Cc-
Confidence 333444 345666666 36899999999999999999999998887788999993210 01
Q ss_pred CCCccCcCc-ccCcceecHHHHHHHHHhccccC---CCCCchHHHHHHHh---cCCCeeeCC--CCcccC--CCC----C
Q 017688 255 EGNKYFRHA-TGQLYAISKDLASYISINQHVLH---KFANEDVSLGSWFI---GLDAEHIDD--RRLCCG--TPP----D 319 (367)
Q Consensus 255 ~~~~Yp~y~-~G~gYvlS~dla~~I~~~~~~l~---~~~~EDV~vG~~l~---~l~v~~~~~--~~f~~~--~~~----~ 319 (367)
++ . | .|.||+||+.++..+-.|-.--. .-.-.|+.+|.|+. +++.++.|. ++|... +|. .
T Consensus 138 s~-r----C~l~~G~LLS~s~l~~lrnnle~C~~~~lsad~d~~lgrCi~~At~v~C~~~hQGvrq~s~~~dspgr~~~~ 212 (681)
T KOG3708|consen 138 SG-R----CRLDTGMLLSQSLLHALRNNLEGCRNDILSADPDEWLGRCIQDATGVGCKPLHQGVRQYSEREDSPGRHDSI 212 (681)
T ss_pred cC-c----cccccceeecHHHHHHHHhhHHHhhcccccCCcHHHHHHHHHHhhcCCccchhhhHHhhhHhhcCCCccccc
Confidence 11 1 5 58999999999999988643222 22467899999994 555555443 223221 222 4
Q ss_pred cccccc-cCCcccccccccccCccCchHHHHHHHhhCc
Q 017688 320 CEWKAQ-AGNVCVASFDWSCSGICRSAERMKEVHRRCG 356 (367)
Q Consensus 320 ~~wk~~-~~~~C~~~~~~~~~gi~~~~~~m~~vH~~~p 356 (367)
.+|+.. ..... .+.+-+ .++..|-.+|.+..
T Consensus 213 ~e~~~s~aFr~A-----~tv~pv-~~p~d~yrLH~yfs 244 (681)
T KOG3708|consen 213 PEWEGSPAFRSA-----LTVHPV-LSPADMYRLHKYFS 244 (681)
T ss_pred hhhcCChHHhhh-----hccCcc-CCHHHHHHHHHHHH
Confidence 567531 11001 111222 56688888887543
No 12
>PF01755 Glyco_transf_25: Glycosyltransferase family 25 (LPS biosynthesis protein); InterPro: IPR002654 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 25 GT25 from CAZY comprises enzymes with only one known activity; as a lipopolysaccharide biosynthesis protein. These enzymes catalyse the transfer of various sugars onto the growing lipopolysaccharide chain during its biosynthesis [].; GO: 0009103 lipopolysaccharide biosynthetic process
Probab=95.94 E-value=0.16 Score=45.98 Aligned_cols=93 Identities=14% Similarity=0.119 Sum_probs=52.7
Q ss_pred EEEECCCCCHHHHHHHHHHhhcCCcccccccccCCeEEEEEeccCCCCCchhHHHHHHHhhhCCCEEEeccc---ccCCc
Q 017688 102 VGINSAFSSRKRRDSVRATWMPQGDKRKKLEEEKGIVMRFVIGHSATSGGILDRAIEAEDKKHGDFLRLEHV---EGYLE 178 (367)
Q Consensus 102 I~V~S~p~~~~rR~aIR~TW~~~~~~l~~l~~~~~v~~~FvlG~s~~~~~~~~~~L~~E~~~~~Dil~ldf~---Dsy~n 178 (367)
|-|.|-+.+.+||+.|.+..... ++.+-|+-|..... ++. ......+..-...... =+..+
T Consensus 4 i~vInL~~~~~Rr~~~~~~~~~~-----------~~~~e~~~Avdg~~---l~~--~~~~~~~~~~~~~~~~~~~lt~gE 67 (200)
T PF01755_consen 4 IYVINLDRSTERRERIQQQLAKL-----------GINFEFFDAVDGRD---LSE--DELFRRYDPELFKKRYGRPLTPGE 67 (200)
T ss_pred EEEEECCCCHHHHHHHHHHHHHc-----------CCceEEEEeecccc---cch--HHHHHHhhhhhhhccccccCCcce
Confidence 44677888899999998877654 34566776665431 111 0111112111110000 01111
Q ss_pred h--hHHHHHHHHHHhhcCCccEEEEeCCceeecHH
Q 017688 179 L--SAKTKIFFATAVALWDADFYVKVDDDVHVNIA 211 (367)
Q Consensus 179 L--t~Kt~~~~~wa~~~~~a~fvlKvDDDvfVn~~ 211 (367)
+ .+-.+..++-+++. +.++.+-..||+.++.+
T Consensus 68 iGC~lSH~~~w~~~v~~-~~~~~lIlEDDv~~~~~ 101 (200)
T PF01755_consen 68 IGCALSHIKAWQRIVDS-GLEYALILEDDVIFDPD 101 (200)
T ss_pred EeehhhHHHHHHHHHHc-CCCeEEEEecccccccc
Confidence 1 44566677777663 67999999999999965
No 13
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=94.75 E-value=0.52 Score=42.65 Aligned_cols=114 Identities=15% Similarity=0.007 Sum_probs=57.0
Q ss_pred HHHHHhhcCCccEEEEeCCceeecHHHHHHHHhhc-CCCCceEEEEeccCc---ccc----cCCCccccccccccCCCCC
Q 017688 186 FFATAVALWDADFYVKVDDDVHVNIATLGATLARH-RSKPRVYIGCMKSGP---VLA----QKGVRYHEPEYWKFGEEGN 257 (367)
Q Consensus 186 ~~~wa~~~~~a~fvlKvDDDvfVn~~~L~~~L~~~-~~~~~ly~G~~~~~p---v~r----~~~~K~yvp~~~~~g~~~~ 257 (367)
.+.++.+..+.+|++.+|||+.+..+.|..++... .+.-.+..|.+...+ ... .....|+... ...+....
T Consensus 77 a~n~~~~~~~~d~i~~lD~D~~~~p~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 155 (228)
T PF13641_consen 77 ALNEALAAARGDYILFLDDDTVLDPDWLERLLAAFADPGVGAVGGPVFPDNDRNWLTRLQDLFFARWHLRF-RSGRRALG 155 (228)
T ss_dssp HHHHHHHH---SEEEEE-SSEEE-CHHHHHHHHHHHBSS--EEEEEEEETTCCCEEEE-TT--S-EETTTS--TT-B---
T ss_pred HHHHHHHhcCCCEEEEECCCcEECHHHHHHHHHHHHhCCCCeEeeeEeecCCCCHHHHHHHHHHhhhhhhh-hhhhcccc
Confidence 44666665579999999999999999888888776 333333334332111 000 0000111100 01111111
Q ss_pred ccCcCcccCcceecHHHHHHHHHhccccCCCCCchHHHHHHHhcCCCe
Q 017688 258 KYFRHATGQLYAISKDLASYISINQHVLHKFANEDVSLGSWFIGLDAE 305 (367)
Q Consensus 258 ~Yp~y~~G~gYvlS~dla~~I~~~~~~l~~~~~EDV~vG~~l~~l~v~ 305 (367)
. .++.|++.++.++++..+-.-.. ....||..++.-+...|..
T Consensus 156 -~-~~~~G~~~~~rr~~~~~~g~fd~---~~~~eD~~l~~r~~~~G~~ 198 (228)
T PF13641_consen 156 -V-AFLSGSGMLFRRSALEEVGGFDP---FILGEDFDLCLRLRAAGWR 198 (228)
T ss_dssp ---S-B--TEEEEEHHHHHHH-S--S---SSSSHHHHHHHHHHHTT--
T ss_pred -e-eeccCcEEEEEHHHHHHhCCCCC---CCcccHHHHHHHHHHCCCc
Confidence 1 34679999999999998853222 3446999999999655543
No 14
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=94.06 E-value=1.4 Score=44.01 Aligned_cols=161 Identities=16% Similarity=0.106 Sum_probs=84.0
Q ss_pred CeEEEEEeccCCCCCchhHHHHHHHhhhCCC--EEEecccccCCchhHHHHHHHHHHhhcCCccEEEEeCCceeecHHHH
Q 017688 136 GIVMRFVIGHSATSGGILDRAIEAEDKKHGD--FLRLEHVEGYLELSAKTKIFFATAVALWDADFYVKVDDDVHVNIATL 213 (367)
Q Consensus 136 ~v~~~FvlG~s~~~~~~~~~~L~~E~~~~~D--il~ldf~Dsy~nLt~Kt~~~~~wa~~~~~a~fvlKvDDDvfVn~~~L 213 (367)
.+.++|+...+.+ .....+++=.+.|.+ +..+. ...-.....|.-...+ +.+..+.+|++..|+|+.+..+.|
T Consensus 70 ~~EIivvdd~s~D---~t~~iv~~~~~~~p~~~i~~v~-~~~~~G~~~K~~~l~~-~~~~a~ge~i~~~DaD~~~~p~~L 144 (373)
T TIGR03472 70 GFQMLFGVQDPDD---PALAVVRRLRADFPDADIDLVI-DARRHGPNRKVSNLIN-MLPHARHDILVIADSDISVGPDYL 144 (373)
T ss_pred CeEEEEEeCCCCC---cHHHHHHHHHHhCCCCceEEEE-CCCCCCCChHHHHHHH-HHHhccCCEEEEECCCCCcChhHH
Confidence 3677777765532 222333332455665 32221 1111122346555443 445568999999999999999999
Q ss_pred HHHHhhcCCCCce-EEEEeccCcccccCC--------CccccccccccCCCCCccCcCcccCcceecHHHHHHHHHhccc
Q 017688 214 GATLARHRSKPRV-YIGCMKSGPVLAQKG--------VRYHEPEYWKFGEEGNKYFRHATGQLYAISKDLASYISINQHV 284 (367)
Q Consensus 214 ~~~L~~~~~~~~l-y~G~~~~~pv~r~~~--------~K~yvp~~~~~g~~~~~Yp~y~~G~gYvlS~dla~~I~~~~~~ 284 (367)
...+.... .+.+ .+++...+.+..... .-++.|.... ... ..-+.+|.|+.+++.+++.+.+---..
T Consensus 145 ~~lv~~~~-~~~v~~V~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~-~~~~~~~~G~~~a~RR~~l~~iGGf~~- 220 (373)
T TIGR03472 145 RQVVAPLA-DPDVGLVTCLYRGRPVPGFWSRLGAMGINHNFLPSVMV-ARA-LGRARFCFGATMALRRATLEAIGGLAA- 220 (373)
T ss_pred HHHHHHhc-CCCcceEeccccCCCCCCHHHHHHHHHhhhhhhHHHHH-HHh-ccCCccccChhhheeHHHHHHcCChHH-
Confidence 88887763 2222 222221110000000 0011121000 000 011345889999999999998853222
Q ss_pred cCCCCCchHHHHHHHhcCCCe
Q 017688 285 LHKFANEDVSLGSWFIGLDAE 305 (367)
Q Consensus 285 l~~~~~EDV~vG~~l~~l~v~ 305 (367)
+.....||+.+|.-+...|.+
T Consensus 221 ~~~~~~ED~~l~~~i~~~G~~ 241 (373)
T TIGR03472 221 LAHHLADDYWLGELVRALGLR 241 (373)
T ss_pred hcccchHHHHHHHHHHHcCCe
Confidence 222236999999999655433
No 15
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=93.91 E-value=1.9 Score=38.63 Aligned_cols=156 Identities=18% Similarity=0.000 Sum_probs=80.0
Q ss_pred eEEEEEeccCCCCCchhHHHHH-HHhhhCCCEEEecccccCCchhHHHHHHHHHHhhcCCccEEEEeCCceeecHHHHHH
Q 017688 137 IVMRFVIGHSATSGGILDRAIE-AEDKKHGDFLRLEHVEGYLELSAKTKIFFATAVALWDADFYVKVDDDVHVNIATLGA 215 (367)
Q Consensus 137 v~~~FvlG~s~~~~~~~~~~L~-~E~~~~~Dil~ldf~Dsy~nLt~Kt~~~~~wa~~~~~a~fvlKvDDDvfVn~~~L~~ 215 (367)
+.++.|-..+.. .....+. .....+..+..+.... -.|.. |. ..+.++....+.+|++.+|+|..+..+.|..
T Consensus 29 ~eiivvdd~s~d---~t~~~~~~~~~~~~~~v~~~~~~~-~~~~g-~~-~a~n~g~~~~~~d~i~~~D~D~~~~~~~l~~ 102 (229)
T cd04192 29 FEVILVDDHSTD---GTVQILEFAAAKPNFQLKILNNSR-VSISG-KK-NALTTAIKAAKGDWIVTTDADCVVPSNWLLT 102 (229)
T ss_pred eEEEEEcCCCCc---ChHHHHHHHHhCCCcceEEeeccC-cccch-hH-HHHHHHHHHhcCCEEEEECCCcccCHHHHHH
Confidence 566666665432 2333344 2222233455554443 22322 22 3345565656899999999999999988888
Q ss_pred HHhhcCC-CCceEEEEeccCcc---ccc-CCCccccccccccCCCCCccCcCcccCcceecHHHHHHHHHhccccCCCCC
Q 017688 216 TLARHRS-KPRVYIGCMKSGPV---LAQ-KGVRYHEPEYWKFGEEGNKYFRHATGQLYAISKDLASYISINQHVLHKFAN 290 (367)
Q Consensus 216 ~L~~~~~-~~~ly~G~~~~~pv---~r~-~~~K~yvp~~~~~g~~~~~Yp~y~~G~gYvlS~dla~~I~~~~~~l~~~~~ 290 (367)
++..... ...++.|.....+. ... ..-.+........+.....++..+.|+++++++++...+---... .....
T Consensus 103 l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~rr~~~~~~ggf~~~-~~~~~ 181 (229)
T cd04192 103 FVAFIQKEQIGLVAGPVIYFKGKSLLAKFQRLDWLSLLGLIAGSFGLGKPFMCNGANMAYRKEAFFEVGGFEGN-DHIAS 181 (229)
T ss_pred HHHHhhcCCCcEEeeeeeecCCccHHHHHHHHHHHHHHHHHhhHHHhcCccccccceEEEEHHHHHHhcCCccc-ccccc
Confidence 8875533 23344454321100 000 000000000000000122455567899999999999987543222 22346
Q ss_pred chHHHHHHH
Q 017688 291 EDVSLGSWF 299 (367)
Q Consensus 291 EDV~vG~~l 299 (367)
||..++.-+
T Consensus 182 eD~~~~~~~ 190 (229)
T cd04192 182 GDDELLLAK 190 (229)
T ss_pred CCHHHHHHH
Confidence 777766544
No 16
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=93.65 E-value=2.8 Score=42.16 Aligned_cols=160 Identities=16% Similarity=0.088 Sum_probs=81.5
Q ss_pred CeEEEEEeccCCCCCchhHHHHHHHhhhCC---CEEEecccccCCchhHHH---HHHHHHHhh-cCCccEEEEeCCceee
Q 017688 136 GIVMRFVIGHSATSGGILDRAIEAEDKKHG---DFLRLEHVEGYLELSAKT---KIFFATAVA-LWDADFYVKVDDDVHV 208 (367)
Q Consensus 136 ~v~~~FvlG~s~~~~~~~~~~L~~E~~~~~---Dil~ldf~Dsy~nLt~Kt---~~~~~wa~~-~~~a~fvlKvDDDvfV 208 (367)
...+++|...|.+ + ..+.+++-.+++. .+..+...+.-.+-.-|. -.+++.+.. .++.+|++.+|+|+.+
T Consensus 70 ~~eIIVVDd~StD--~-T~~i~~~~~~~~~~~~~i~vi~~~~~~~g~~Gk~~A~n~g~~~A~~~~~~gd~llflDaD~~~ 146 (384)
T TIGR03469 70 KLHVILVDDHSTD--G-TADIARAAARAYGRGDRLTVVSGQPLPPGWSGKLWAVSQGIAAARTLAPPADYLLLTDADIAH 146 (384)
T ss_pred ceEEEEEeCCCCC--c-HHHHHHHHHHhcCCCCcEEEecCCCCCCCCcchHHHHHHHHHHHhccCCCCCEEEEECCCCCC
Confidence 3567777776653 2 2222222223343 344443222112223443 234455443 3458999999999999
Q ss_pred cHHHHHHHHhhcCCCC-ceEEEEeccCcccccCCCccccc-----------cccccCCCCCccCcCcccCcceecHHHHH
Q 017688 209 NIATLGATLARHRSKP-RVYIGCMKSGPVLAQKGVRYHEP-----------EYWKFGEEGNKYFRHATGQLYAISKDLAS 276 (367)
Q Consensus 209 n~~~L~~~L~~~~~~~-~ly~G~~~~~pv~r~~~~K~yvp-----------~~~~~g~~~~~Yp~y~~G~gYvlS~dla~ 276 (367)
..+.|.+.+......+ .+..|.+.... .....+...| ..|. .+ .......+.|++.++++++.+
T Consensus 147 ~p~~l~~lv~~~~~~~~~~vs~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~G~~~lirr~~~~ 222 (384)
T TIGR03469 147 GPDNLARLVARARAEGLDLVSLMVRLRC--ESFWEKLLIPAFVFFFQKLYPFRWV-ND-PRRRTAAAAGGCILIRREALE 222 (384)
T ss_pred ChhHHHHHHHHHHhCCCCEEEecccccC--CCHHHHHHHHHHHHHHHHhcchhhh-cC-CCccceeecceEEEEEHHHHH
Confidence 9998888887654322 22222221100 0000000001 0111 00 112234467999999999999
Q ss_pred HHHHhccccCCCCCchHHHHHHHhcCC
Q 017688 277 YISINQHVLHKFANEDVSLGSWFIGLD 303 (367)
Q Consensus 277 ~I~~~~~~l~~~~~EDV~vG~~l~~l~ 303 (367)
.+---... .....||+.++.-+...|
T Consensus 223 ~vGGf~~~-~~~~~ED~~L~~r~~~~G 248 (384)
T TIGR03469 223 RIGGIAAI-RGALIDDCTLAAAVKRSG 248 (384)
T ss_pred HcCCHHHH-hhCcccHHHHHHHHHHcC
Confidence 88332111 122479999999886543
No 17
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=92.48 E-value=7.8 Score=35.01 Aligned_cols=159 Identities=11% Similarity=-0.022 Sum_probs=80.3
Q ss_pred CCeEEEEEeccCCCCCchhHHHHHHHhhhCCCEEEecccccCCchhHHHHHHHHHHhhcCCccEEEEeCCceeecHHHHH
Q 017688 135 KGIVMRFVIGHSATSGGILDRAIEAEDKKHGDFLRLEHVEGYLELSAKTKIFFATAVALWDADFYVKVDDDVHVNIATLG 214 (367)
Q Consensus 135 ~~v~~~FvlG~s~~~~~~~~~~L~~E~~~~~Dil~ldf~Dsy~nLt~Kt~~~~~wa~~~~~a~fvlKvDDDvfVn~~~L~ 214 (367)
..+.++.+.+.+.+ .....++...+.+..+...... +.. + -.++..+.+..+.+|++.+|+|..+.++.|.
T Consensus 30 ~~~evivvd~~s~d---~~~~~~~~~~~~~~~v~~i~~~----~~~-~-~~a~N~g~~~a~~d~v~~lD~D~~~~~~~l~ 100 (249)
T cd02525 30 DLIEIIVVDGGSTD---GTREIVQEYAAKDPRIRLIDNP----KRI-Q-SAGLNIGIRNSRGDIIIRVDAHAVYPKDYIL 100 (249)
T ss_pred CccEEEEEeCCCCc---cHHHHHHHHHhcCCeEEEEeCC----CCC-c-hHHHHHHHHHhCCCEEEEECCCccCCHHHHH
Confidence 34567776665542 2344444444443334333221 111 1 1346666665589999999999999988888
Q ss_pred HHHhhcCCCC-ceEEEEecc---Ccccc----cCCCccccccccccCCCCCccCcCcccCcceecHHHHHHHHHhccccC
Q 017688 215 ATLARHRSKP-RVYIGCMKS---GPVLA----QKGVRYHEPEYWKFGEEGNKYFRHATGQLYAISKDLASYISINQHVLH 286 (367)
Q Consensus 215 ~~L~~~~~~~-~ly~G~~~~---~pv~r----~~~~K~yvp~~~~~g~~~~~Yp~y~~G~gYvlS~dla~~I~~~~~~l~ 286 (367)
..+......+ .+..|.... .+... .....+.....+... ....+-.++.|++.++++++...+-.-...
T Consensus 101 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-- 177 (249)
T cd02525 101 ELVEALKRTGADNVGGPMETIGESKFQKAIAVAQSSPLGSGGSAYRG-GAVKIGYVDTVHHGAYRREVFEKVGGFDES-- 177 (249)
T ss_pred HHHHHHhcCCCCEEecceecCCCChHHHHHHHHhhchhccCCccccc-cccccccccccccceEEHHHHHHhCCCCcc--
Confidence 8886553322 334444321 11100 000000000000000 000101145788889999998877432222
Q ss_pred CCCCchHHHHHHHhcCCCe
Q 017688 287 KFANEDVSLGSWFIGLDAE 305 (367)
Q Consensus 287 ~~~~EDV~vG~~l~~l~v~ 305 (367)
....||..++.-+...|.+
T Consensus 178 ~~~~eD~~l~~r~~~~G~~ 196 (249)
T cd02525 178 LVRNEDAELNYRLRKAGYK 196 (249)
T ss_pred cCccchhHHHHHHHHcCcE
Confidence 2347999998777544433
No 18
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=92.28 E-value=3.2 Score=34.49 Aligned_cols=156 Identities=12% Similarity=0.070 Sum_probs=76.3
Q ss_pred EEEEEECCCCCHHHH-HHHHHHhhcCCcccccccccCCeEEEEEeccCCCCCchhHHHHHHHhhhCCCEEEecccccCCc
Q 017688 100 MVVGINSAFSSRKRR-DSVRATWMPQGDKRKKLEEEKGIVMRFVIGHSATSGGILDRAIEAEDKKHGDFLRLEHVEGYLE 178 (367)
Q Consensus 100 llI~V~S~p~~~~rR-~aIR~TW~~~~~~l~~l~~~~~v~~~FvlG~s~~~~~~~~~~L~~E~~~~~Dil~ldf~Dsy~n 178 (367)
++|.+.-.+....+- +++++. . ...+.++++-..+. +...+.+.+-.+....+..+...+.. .
T Consensus 2 vvip~~n~~~~l~~~l~sl~~q--~----------~~~~eiivvdd~s~---d~~~~~~~~~~~~~~~i~~i~~~~n~-g 65 (169)
T PF00535_consen 2 VVIPTYNEAEYLERTLESLLKQ--T----------DPDFEIIVVDDGST---DETEEILEEYAESDPNIRYIRNPENL-G 65 (169)
T ss_dssp EEEEESS-TTTHHHHHHHHHHH--S----------GCEEEEEEEECS-S---SSHHHHHHHHHCCSTTEEEEEHCCCS-H
T ss_pred EEEEeeCCHHHHHHHHHHHhhc--c----------CCCEEEEEeccccc---cccccccccccccccccccccccccc-c
Confidence 344444444455443 556666 1 12345666665542 23444444444434455555444433 2
Q ss_pred hhHHHHHHHHHHhhcCCccEEEEeCCceeecHHHHHHHHhhcCC-CCceEEEEecc--Cc--ccccCCC--ccccc---c
Q 017688 179 LSAKTKIFFATAVALWDADFYVKVDDDVHVNIATLGATLARHRS-KPRVYIGCMKS--GP--VLAQKGV--RYHEP---E 248 (367)
Q Consensus 179 Lt~Kt~~~~~wa~~~~~a~fvlKvDDDvfVn~~~L~~~L~~~~~-~~~ly~G~~~~--~p--v~r~~~~--K~yvp---~ 248 (367)
+. ..+..+.+....+|++.+|||.++..+.|..++..... ...+.+|.... .. ....... .+... .
T Consensus 66 ~~----~~~n~~~~~a~~~~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (169)
T PF00535_consen 66 FS----AARNRGIKHAKGEYILFLDDDDIISPDWLEELVEALEKNPPDVVIGSVIYIDDDNRYPDRRLRFSFWNRFERKI 141 (169)
T ss_dssp HH----HHHHHHHHH--SSEEEEEETTEEE-TTHHHHHHHHHHHCTTEEEEEEEEEEECTTETEECCCTSEEEECCHCHH
T ss_pred cc----ccccccccccceeEEEEeCCCceEcHHHHHHHHHHHHhCCCcEEEEEEEEecCCccccccccchhhhhhhhhHH
Confidence 22 23333334345669999999999998877776666543 34455566431 11 1001000 01111 1
Q ss_pred ccccCCCCCccCcCcccCcceecHHHHHHH
Q 017688 249 YWKFGEEGNKYFRHATGQLYAISKDLASYI 278 (367)
Q Consensus 249 ~~~~g~~~~~Yp~y~~G~gYvlS~dla~~I 278 (367)
... ....-..++.|++.++++++.+.+
T Consensus 142 ~~~---~~~~~~~~~~~~~~~~rr~~~~~~ 168 (169)
T PF00535_consen 142 FNN---IRFWKISFFIGSCALFRRSVFEEI 168 (169)
T ss_dssp HHT---THSTTSSEESSSCEEEEEHHHHHC
T ss_pred HHh---hhcCCcccccccEEEEEHHHHHhh
Confidence 111 112334467899999999988764
No 19
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=92.18 E-value=8.1 Score=34.33 Aligned_cols=133 Identities=18% Similarity=0.132 Sum_probs=77.5
Q ss_pred eEEEEEeccCCCCCchhHHHHHHHhhhCC--CEEEecccccCCchhHHHHHHHHHHhhcCCccEEEEeCCceeecHHHHH
Q 017688 137 IVMRFVIGHSATSGGILDRAIEAEDKKHG--DFLRLEHVEGYLELSAKTKIFFATAVALWDADFYVKVDDDVHVNIATLG 214 (367)
Q Consensus 137 v~~~FvlG~s~~~~~~~~~~L~~E~~~~~--Dil~ldf~Dsy~nLt~Kt~~~~~wa~~~~~a~fvlKvDDDvfVn~~~L~ 214 (367)
+.+++|...+.+ .....+++-.+.|. ++......... ....|.- .+..+.+....+|++..|+|+.+..+.|.
T Consensus 31 ~eiivVdd~s~d---~t~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~-~~n~g~~~a~~d~i~~~D~D~~~~~~~l~ 105 (196)
T cd02520 31 YEILFCVQDEDD---PAIPVVRKLIAKYPNVDARLLIGGEKV-GINPKVN-NLIKGYEEARYDILVISDSDISVPPDYLR 105 (196)
T ss_pred eEEEEEeCCCcc---hHHHHHHHHHHHCCCCcEEEEecCCcC-CCCHhHH-HHHHHHHhCCCCEEEEECCCceEChhHHH
Confidence 677777766642 22334444445554 33222211111 1223432 24455555678999999999999988888
Q ss_pred HHHhhcCCCCceEEEEeccCcccccCCCccccccccccCCCCCccCcCcccCcceecHHHHHHHHHhccccCCCCCchHH
Q 017688 215 ATLARHRSKPRVYIGCMKSGPVLAQKGVRYHEPEYWKFGEEGNKYFRHATGQLYAISKDLASYISINQHVLHKFANEDVS 294 (367)
Q Consensus 215 ~~L~~~~~~~~ly~G~~~~~pv~r~~~~K~yvp~~~~~g~~~~~Yp~y~~G~gYvlS~dla~~I~~~~~~l~~~~~EDV~ 294 (367)
..+.... .+. +|.+.+ .++.|++.++.+++.+.+-.-. ....+..||..
T Consensus 106 ~l~~~~~-~~~--~~~v~~---------------------------~~~~g~~~~~r~~~~~~~ggf~-~~~~~~~eD~~ 154 (196)
T cd02520 106 RMVAPLM-DPG--VGLVTC---------------------------LCAFGKSMALRREVLDAIGGFE-AFADYLAEDYF 154 (196)
T ss_pred HHHHHhh-CCC--CCeEEe---------------------------ecccCceeeeEHHHHHhccChH-HHhHHHHHHHH
Confidence 8776642 122 122210 0467899999999998874332 12223469999
Q ss_pred HHHHHhcCCCe
Q 017688 295 LGSWFIGLDAE 305 (367)
Q Consensus 295 vG~~l~~l~v~ 305 (367)
++.-+...|.+
T Consensus 155 l~~rl~~~G~~ 165 (196)
T cd02520 155 LGKLIWRLGYR 165 (196)
T ss_pred HHHHHHHcCCe
Confidence 99988655433
No 20
>PF13506 Glyco_transf_21: Glycosyl transferase family 21
Probab=91.95 E-value=0.44 Score=42.81 Aligned_cols=122 Identities=16% Similarity=0.074 Sum_probs=72.9
Q ss_pred hHHHHHHHHHHhhcCCccEEEEeCCceeecHHHHHHHHhhcCCCCceEEEEeccC-cccccCCC---c---ccccccccc
Q 017688 180 SAKTKIFFATAVALWDADFYVKVDDDVHVNIATLGATLARHRSKPRVYIGCMKSG-PVLAQKGV---R---YHEPEYWKF 252 (367)
Q Consensus 180 t~Kt~~~~~wa~~~~~a~fvlKvDDDvfVn~~~L~~~L~~~~~~~~ly~G~~~~~-pv~r~~~~---K---~yvp~~~~~ 252 (367)
..|+-....-+....+.++++..|+|+.|+.+.|.+.+.......--.+.++..+ +. +.-.+ . ...+.-+..
T Consensus 16 N~Kv~nL~~~~~~~a~~d~~~~~DsDi~v~p~~L~~lv~~l~~p~vglVt~~~~~~~~-~~~~~~l~~~~~~~~~~~~~a 94 (175)
T PF13506_consen 16 NPKVNNLAQGLEAGAKYDYLVISDSDIRVPPDYLRELVAPLADPGVGLVTGLPRGVPA-RGFWSRLEAAFFNFLPGVLQA 94 (175)
T ss_pred ChHHHHHHHHHHhhCCCCEEEEECCCeeECHHHHHHHHHHHhCCCCcEEEecccccCC-cCHHHHHHHHHHhHHHHHHHH
Confidence 3566555554333368999999999999999999998877643211122222111 11 00000 0 001111110
Q ss_pred CCCCCccCcCcccCcceecHHHHHHHHHhccccCCCCCchHHHHHHHhcCCCeee
Q 017688 253 GEEGNKYFRHATGQLYAISKDLASYISINQHVLHKFANEDVSLGSWFIGLDAEHI 307 (367)
Q Consensus 253 g~~~~~Yp~y~~G~gYvlS~dla~~I~~~~~~l~~~~~EDV~vG~~l~~l~v~~~ 307 (367)
-.-.+++.|+.+++.++++..+-- -..+..+--||..+|..+...|.+..
T Consensus 95 ----~~~~~~~~G~~m~~rr~~L~~~GG-~~~l~~~ladD~~l~~~~~~~G~~v~ 144 (175)
T PF13506_consen 95 ----LGGAPFAWGGSMAFRREALEEIGG-FEALADYLADDYALGRRLRARGYRVV 144 (175)
T ss_pred ----hcCCCceecceeeeEHHHHHHccc-HHHHhhhhhHHHHHHHHHHHCCCeEE
Confidence 123568999999999999987732 12233456899999999977666654
No 21
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=91.93 E-value=9 Score=36.66 Aligned_cols=125 Identities=15% Similarity=0.133 Sum_probs=67.8
Q ss_pred HHHHhhcCCccEEEEeCCceeecHHHHHHHHhhcCCCCceEEE-Eecc--CcccccC--------------CCccccc-c
Q 017688 187 FATAVALWDADFYVKVDDDVHVNIATLGATLARHRSKPRVYIG-CMKS--GPVLAQK--------------GVRYHEP-E 248 (367)
Q Consensus 187 ~~wa~~~~~a~fvlKvDDDvfVn~~~L~~~L~~~~~~~~ly~G-~~~~--~pv~r~~--------------~~K~yvp-~ 248 (367)
...+.+.-..+|++..|+|+.+..+-|..++......+...+| .+.. +.-.... ...|... .
T Consensus 75 ~N~g~~~A~gd~i~fLD~D~~~~~~wL~~ll~~l~~~~~~~v~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (299)
T cd02510 75 RIAGARAATGDVLVFLDSHCEVNVGWLEPLLARIAENRKTVVCPIIDVIDADTFEYRGSSGDARGGFDWSLHFKWLPLPE 154 (299)
T ss_pred HHHHHHHccCCEEEEEeCCcccCccHHHHHHHHHHhCCCeEEEeeeccccCCCeeEecCCCceeEEecccceeccccCCH
Confidence 4444444578999999999999988877777665433333332 2210 0000000 0011110 0
Q ss_pred cc-ccCC-CCCccCcCcccCcceecHHHHHHHHHhccccCCCCCchHHHHHHH--hcCCCeeeCCCC
Q 017688 249 YW-KFGE-EGNKYFRHATGQLYAISKDLASYISINQHVLHKFANEDVSLGSWF--IGLDAEHIDDRR 311 (367)
Q Consensus 249 ~~-~~g~-~~~~Yp~y~~G~gYvlS~dla~~I~~~~~~l~~~~~EDV~vG~~l--~~l~v~~~~~~~ 311 (367)
.. .... +.....++++|+++++++++...+-.-...+..+..||+-+..=+ .|..+..+++..
T Consensus 155 ~~~~~~~~~~~~~~~~~~g~~~~irr~~~~~vGgfDe~~~~~~~ED~Dl~~R~~~~G~~i~~~p~a~ 221 (299)
T cd02510 155 EERRRESPTAPIRSPTMAGGLFAIDREWFLELGGYDEGMDIWGGENLELSFKVWQCGGSIEIVPCSR 221 (299)
T ss_pred HHhhhcCCCCCccCccccceeeEEEHHHHHHhCCCCCcccccCchhHHHHHHHHHcCCeEEEeeccE
Confidence 00 0000 012334567899999999999988544444555557998875544 455555544433
No 22
>PRK11204 N-glycosyltransferase; Provisional
Probab=90.52 E-value=17 Score=36.56 Aligned_cols=192 Identities=13% Similarity=0.107 Sum_probs=97.7
Q ss_pred ceeEEEEEECCCCCHHHHHHHHHHhhcCCcccccccccCCeEEEEEeccCCCCCchhHHHHHHHhhhCCCEEEecccccC
Q 017688 97 KYLMVVGINSAFSSRKRRDSVRATWMPQGDKRKKLEEEKGIVMRFVIGHSATSGGILDRAIEAEDKKHGDFLRLEHVEGY 176 (367)
Q Consensus 97 ~~~llI~V~S~p~~~~rR~aIR~TW~~~~~~l~~l~~~~~v~~~FvlG~s~~~~~~~~~~L~~E~~~~~Dil~ldf~Dsy 176 (367)
.+.+-|+|.+--.. +.|++|-.+-.. . ......++.+...+. +...+.+++..+++..+...+..
T Consensus 53 ~p~vsViIp~yne~----~~i~~~l~sl~~----q-~yp~~eiiVvdD~s~---d~t~~~l~~~~~~~~~v~~i~~~--- 117 (420)
T PRK11204 53 YPGVSILVPCYNEG----ENVEETISHLLA----L-RYPNYEVIAINDGSS---DNTGEILDRLAAQIPRLRVIHLA--- 117 (420)
T ss_pred CCCEEEEEecCCCH----HHHHHHHHHHHh----C-CCCCeEEEEEECCCC---ccHHHHHHHHHHhCCcEEEEEcC---
Confidence 34566656544322 345555443211 0 112344444443332 23444555555666666555432
Q ss_pred CchhHHHHHHHHHHhhcCCccEEEEeCCceeecHHHHHHHHhhcCCCCceEEEEeccCcccccCCC---ccccccccc-c
Q 017688 177 LELSAKTKIFFATAVALWDADFYVKVDDDVHVNIATLGATLARHRSKPRVYIGCMKSGPVLAQKGV---RYHEPEYWK-F 252 (367)
Q Consensus 177 ~nLt~Kt~~~~~wa~~~~~a~fvlKvDDDvfVn~~~L~~~L~~~~~~~~ly~G~~~~~pv~r~~~~---K~yvp~~~~-~ 252 (367)
.|.. |. ..++.+.+..+.+|++..|+|..+..+.|.+.+......+++ |.+.+.+..++..+ +....++.. +
T Consensus 118 ~n~G-ka-~aln~g~~~a~~d~i~~lDaD~~~~~d~L~~l~~~~~~~~~v--~~v~g~~~~~~~~~~~~~~~~~~~~~~~ 193 (420)
T PRK11204 118 ENQG-KA-NALNTGAAAARSEYLVCIDGDALLDPDAAAYMVEHFLHNPRV--GAVTGNPRIRNRSTLLGRIQVGEFSSII 193 (420)
T ss_pred CCCC-HH-HHHHHHHHHcCCCEEEEECCCCCCChhHHHHHHHHHHhCCCe--EEEECCceeccchhHHHHHHHHHHHHhh
Confidence 2332 33 345666665689999999999999999988888776433432 33322222111110 000000000 0
Q ss_pred C-----CCCCccCcCcccCcceecHHHHHHHHHhccccCCCCCchHHHHHHHh--cCCCeeeCCC
Q 017688 253 G-----EEGNKYFRHATGQLYAISKDLASYISINQHVLHKFANEDVSLGSWFI--GLDAEHIDDR 310 (367)
Q Consensus 253 g-----~~~~~Yp~y~~G~gYvlS~dla~~I~~~~~~l~~~~~EDV~vG~~l~--~l~v~~~~~~ 310 (367)
+ ......+...+|.+.++.+++...+---. +....||+.++.-+. |..+...++.
T Consensus 194 ~~~~~~~~~~~~~~~~~G~~~~~rr~~l~~vgg~~---~~~~~ED~~l~~rl~~~G~~i~~~p~~ 255 (420)
T PRK11204 194 GLIKRAQRVYGRVFTVSGVITAFRKSALHEVGYWS---TDMITEDIDISWKLQLRGWDIRYEPRA 255 (420)
T ss_pred hHHHHHHHHhCCceEecceeeeeeHHHHHHhCCCC---CCcccchHHHHHHHHHcCCeEEecccc
Confidence 0 00001122357888999999988763211 223479999998885 4445555543
No 23
>cd06532 Glyco_transf_25 Glycosyltransferase family 25 [lipooligosaccharide (LOS) biosynthesis protein] is a family of glycosyltransferases involved in LOS biosynthesis. The members include the beta(1,4) galactosyltransferases: Lgt2 of Moraxella catarrhalis, LgtB and LgtE of Neisseria gonorrhoeae and Lic2A of Haemophilus influenzae. M. catarrhalis Lgt2 catalyzes the addition of galactose (Gal) to the growing chain of LOS on the cell surface. N. gonorrhoeae LgtB and LgtE link Gal-beta(1,4) to GlcNAc (N-acetylglucosamine) and Glc (glucose), respectively. The genes encoding LgtB and LgtE are two genes of a five gene locus involved in the synthesis of gonococcal LOS. LgtE is believed to perform the first step in LOS biosynthesis.
Probab=89.13 E-value=3.6 Score=34.80 Aligned_cols=116 Identities=12% Similarity=0.043 Sum_probs=67.0
Q ss_pred EEECCCCCHHHHHHHHHHhhcCCcccccccccCCeEEEEEeccCCCCCchhHHHHHHHhhhCCCE-EEecccccCCchhH
Q 017688 103 GINSAFSSRKRRDSVRATWMPQGDKRKKLEEEKGIVMRFVIGHSATSGGILDRAIEAEDKKHGDF-LRLEHVEGYLELSA 181 (367)
Q Consensus 103 ~V~S~p~~~~rR~aIR~TW~~~~~~l~~l~~~~~v~~~FvlG~s~~~~~~~~~~L~~E~~~~~Di-l~ldf~Dsy~nLt~ 181 (367)
.|.+-+...+||+.+++.-... ++.+.|+-|...... ....+......+... ...+..-+----.+
T Consensus 3 ~vInL~~~~~Rr~~~~~~~~~~-----------~~~~~~~~Avd~~~~--~~~~~~~~~~~~~~~~~~~~l~~gEiGC~l 69 (128)
T cd06532 3 FVINLDRSTDRRERMEAQLAAL-----------GLDFEFFDAVDGKDL--SEEELAALYDALFLPRYGRPLTPGEIGCFL 69 (128)
T ss_pred EEEECCCCHHHHHHHHHHHHHc-----------CCCeEEEeccccccC--CHHHHHHHhHHHhhhhcCCCCChhhHHHHH
Confidence 4677888899999999855543 345667777654311 111121111100000 00001111111233
Q ss_pred HHHHHHHHHhhcCCccEEEEeCCceeecHHHHHHHHhhcCCCCceEEEEeccCcccccCCCccccccccccCCCCCccCc
Q 017688 182 KTKIFFATAVALWDADFYVKVDDDVHVNIATLGATLARHRSKPRVYIGCMKSGPVLAQKGVRYHEPEYWKFGEEGNKYFR 261 (367)
Q Consensus 182 Kt~~~~~wa~~~~~a~fvlKvDDDvfVn~~~L~~~L~~~~~~~~ly~G~~~~~pv~r~~~~K~yvp~~~~~g~~~~~Yp~ 261 (367)
-.+..++.+++ .+.++.+-..||+.+..+
T Consensus 70 SH~~~w~~~~~-~~~~~alIlEDDv~~~~~-------------------------------------------------- 98 (128)
T cd06532 70 SHYKLWQKIVE-SNLEYALILEDDAILDPD-------------------------------------------------- 98 (128)
T ss_pred HHHHHHHHHHH-cCCCeEEEEccCcEECCC--------------------------------------------------
Confidence 44455555555 366899999999988866
Q ss_pred CcccCcceecHHHHHHHHHhccc
Q 017688 262 HATGQLYAISKDLASYISINQHV 284 (367)
Q Consensus 262 y~~G~gYvlS~dla~~I~~~~~~ 284 (367)
+..||++|+..|++++.....
T Consensus 99 --~~~~Y~vs~~~A~~ll~~~~~ 119 (128)
T cd06532 99 --GTAGYLVSRKGAKKLLAALEP 119 (128)
T ss_pred --CceEEEeCHHHHHHHHHhCCC
Confidence 457899999999999987554
No 24
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=88.54 E-value=10 Score=33.99 Aligned_cols=119 Identities=13% Similarity=0.024 Sum_probs=67.0
Q ss_pred HHHHhhcCCccEEEEeCCceeecHHHHHHHHhhcCCCCceE-E-EEec--c-Ccc---cccC--CCcccccc-ccccCCC
Q 017688 187 FATAVALWDADFYVKVDDDVHVNIATLGATLARHRSKPRVY-I-GCMK--S-GPV---LAQK--GVRYHEPE-YWKFGEE 255 (367)
Q Consensus 187 ~~wa~~~~~a~fvlKvDDDvfVn~~~L~~~L~~~~~~~~ly-~-G~~~--~-~pv---~r~~--~~K~yvp~-~~~~g~~ 255 (367)
+..+.+..+.+|++.+|+|+++..+.|..++......+++. + |... . ... .+.. ....+... .+. .
T Consensus 76 ~n~~~~~a~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 152 (234)
T cd06421 76 LNNALAHTTGDFVAILDADHVPTPDFLRRTLGYFLDDPKVALVQTPQFFYNPDPFDWLADGAPNEQELFYGVIQPG---R 152 (234)
T ss_pred HHHHHHhCCCCEEEEEccccCcCccHHHHHHHHHhcCCCeEEEecceEEecCCcchhHHHHHHHHHHHHHHHHHHH---H
Confidence 34444545889999999999999998888887765434321 1 2111 0 000 0000 00000000 000 0
Q ss_pred CCccCcCcccCcceecHHHHHHHHHhccccCCCCCchHHHHHHHhcC--CCeeeCCCC
Q 017688 256 GNKYFRHATGQLYAISKDLASYISINQHVLHKFANEDVSLGSWFIGL--DAEHIDDRR 311 (367)
Q Consensus 256 ~~~Yp~y~~G~gYvlS~dla~~I~~~~~~l~~~~~EDV~vG~~l~~l--~v~~~~~~~ 311 (367)
......++.|++.++++++.+.+-.-. ..+..||..++.-+... .+..+++..
T Consensus 153 ~~~~~~~~~g~~~~~r~~~~~~ig~~~---~~~~~eD~~l~~r~~~~g~~i~~~~~~~ 207 (234)
T cd06421 153 DRWGAAFCCGSGAVVRREALDEIGGFP---TDSVTEDLATSLRLHAKGWRSVYVPEPL 207 (234)
T ss_pred hhcCCceecCceeeEeHHHHHHhCCCC---ccceeccHHHHHHHHHcCceEEEecCcc
Confidence 011244678999999999998874321 23447999999888655 444555443
No 25
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=87.75 E-value=20 Score=32.78 Aligned_cols=118 Identities=17% Similarity=0.095 Sum_probs=61.3
Q ss_pred HHHHHhhcCCccEEEEeCCceeecHHHHHHHHhhcCC-CCceEEEEecc-CcccccCCCccc--cccccccCCCCCccCc
Q 017688 186 FFATAVALWDADFYVKVDDDVHVNIATLGATLARHRS-KPRVYIGCMKS-GPVLAQKGVRYH--EPEYWKFGEEGNKYFR 261 (367)
Q Consensus 186 ~~~wa~~~~~a~fvlKvDDDvfVn~~~L~~~L~~~~~-~~~ly~G~~~~-~pv~r~~~~K~y--vp~~~~~g~~~~~Yp~ 261 (367)
.+..+.+....+|++.+|+|+.+..+.|.+++..... ...+..|.... .+.........+ ....+..-......+.
T Consensus 100 a~n~gi~~a~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (251)
T cd06439 100 ALNRALALATGEIVVFTDANALLDPDALRLLVRHFADPSVGAVSGELVIVDGGGSGSGEGLYWKYENWLKRAESRLGSTV 179 (251)
T ss_pred HHHHHHHHcCCCEEEEEccccCcCHHHHHHHHHHhcCCCccEEEeEEEecCCcccchhHHHHHHHHHHHHHHHHhcCCee
Confidence 3455555456799999999999998888888877642 22333343321 110000000100 0000000000012233
Q ss_pred CcccCcceecHHHHHHHHHhccccCCCCCchHHHHHHHhcCC--CeeeCC
Q 017688 262 HATGQLYAISKDLASYISINQHVLHKFANEDVSLGSWFIGLD--AEHIDD 309 (367)
Q Consensus 262 y~~G~gYvlS~dla~~I~~~~~~l~~~~~EDV~vG~~l~~l~--v~~~~~ 309 (367)
.+.|+++++.+++.. ..-.....||..++.-+...| +...+.
T Consensus 180 ~~~g~~~~~rr~~~~------~~~~~~~~eD~~l~~~~~~~G~~~~~~~~ 223 (251)
T cd06439 180 GANGAIYAIRRELFR------PLPADTINDDFVLPLRIARQGYRVVYEPD 223 (251)
T ss_pred eecchHHHhHHHHhc------CCCcccchhHHHHHHHHHHcCCeEEeccc
Confidence 467778878887766 111223479999988886554 444443
No 26
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=87.51 E-value=15 Score=30.28 Aligned_cols=95 Identities=12% Similarity=0.107 Sum_probs=51.0
Q ss_pred HHHHHHhhcCCccEEEEeCCceeecHHHHHHHHhhcCCCCc--eEEEEeccC----ccccc-CCCccccccccc-cCCCC
Q 017688 185 IFFATAVALWDADFYVKVDDDVHVNIATLGATLARHRSKPR--VYIGCMKSG----PVLAQ-KGVRYHEPEYWK-FGEEG 256 (367)
Q Consensus 185 ~~~~wa~~~~~a~fvlKvDDDvfVn~~~L~~~L~~~~~~~~--ly~G~~~~~----pv~r~-~~~K~yvp~~~~-~g~~~ 256 (367)
..+.++.+..+.+|++.+|+|..+....|..++......+. +..|..... ..... ...++....... .+...
T Consensus 68 ~~~n~~~~~~~~~~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (180)
T cd06423 68 GALNAGLRHAKGDIVVVLDADTILEPDALKRLVVPFFADPKVGAVQGRVRVRNGSENLLTRLQAIEYLSIFRLGRRAQSA 147 (180)
T ss_pred HHHHHHHHhcCCCEEEEECCCCCcChHHHHHHHHHhccCCCeeeEeeeEEEecCcCcceeccchheecceeeeeeehhhe
Confidence 34455555558999999999999998888877555433332 233333211 01100 000111110000 00001
Q ss_pred CccCcCcccCcceecHHHHHHHH
Q 017688 257 NKYFRHATGQLYAISKDLASYIS 279 (367)
Q Consensus 257 ~~Yp~y~~G~gYvlS~dla~~I~ 279 (367)
..++..+.|.+++++++++..+-
T Consensus 148 ~~~~~~~~g~~~~~~~~~~~~~g 170 (180)
T cd06423 148 LGGVLVLSGAFGAFRREALREVG 170 (180)
T ss_pred ecceeecCchHHHHHHHHHHHhC
Confidence 23445678999999999988764
No 27
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=86.51 E-value=18 Score=30.15 Aligned_cols=85 Identities=16% Similarity=0.168 Sum_probs=55.1
Q ss_pred hcCCccEEEEeCCceeecHHHHHHHHhhcCCCCce-EEEEeccCcccccCCCccccccccccCCCCCccCcCcccCccee
Q 017688 192 ALWDADFYVKVDDDVHVNIATLGATLARHRSKPRV-YIGCMKSGPVLAQKGVRYHEPEYWKFGEEGNKYFRHATGQLYAI 270 (367)
Q Consensus 192 ~~~~a~fvlKvDDDvfVn~~~L~~~L~~~~~~~~l-y~G~~~~~pv~r~~~~K~yvp~~~~~g~~~~~Yp~y~~G~gYvl 270 (367)
+..+.+|++..|||..+..+.|..++......+.+ .++.. +.|++.++
T Consensus 71 ~~~~~~~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~~~~~-------------------------------~~~~~~~~ 119 (166)
T cd04186 71 REAKGDYVLLLNPDTVVEPGALLELLDAAEQDPDVGIVGPK-------------------------------VSGAFLLV 119 (166)
T ss_pred hhCCCCEEEEECCCcEECccHHHHHHHHHHhCCCceEEEcc-------------------------------CceeeEee
Confidence 33489999999999999998888888754333221 11111 56888999
Q ss_pred cHHHHHHHHHhccccCCCCCchHHHHHHHh--cCCCeeeC
Q 017688 271 SKDLASYISINQHVLHKFANEDVSLGSWFI--GLDAEHID 308 (367)
Q Consensus 271 S~dla~~I~~~~~~l~~~~~EDV~vG~~l~--~l~v~~~~ 308 (367)
++++++.+-.-...... ..||..+..-+. |..+...+
T Consensus 120 ~~~~~~~~~~~~~~~~~-~~eD~~~~~~~~~~g~~i~~~~ 158 (166)
T cd04186 120 RREVFEEVGGFDEDFFL-YYEDVDLCLRARLAGYRVLYVP 158 (166)
T ss_pred eHHHHHHcCCCChhhhc-cccHHHHHHHHHHcCCeEEEcc
Confidence 99988876432222222 568998877665 44444433
No 28
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=86.40 E-value=22 Score=31.24 Aligned_cols=99 Identities=16% Similarity=0.102 Sum_probs=59.0
Q ss_pred HHHHHHHhhcCCccEEEEeCCceeecHHHHHHHHhhcC-CCCceEEEEeccCcccccCCCccccccccccCCCCCccCcC
Q 017688 184 KIFFATAVALWDADFYVKVDDDVHVNIATLGATLARHR-SKPRVYIGCMKSGPVLAQKGVRYHEPEYWKFGEEGNKYFRH 262 (367)
Q Consensus 184 ~~~~~wa~~~~~a~fvlKvDDDvfVn~~~L~~~L~~~~-~~~~ly~G~~~~~pv~r~~~~K~yvp~~~~~g~~~~~Yp~y 262 (367)
-.+++++. ..+.+|++..|+|..+..+.|..++.... +.-.++.|... . . .+
T Consensus 69 n~~~~~a~-~~~~d~v~~ld~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~------~-------~-------~~------ 121 (202)
T cd04185 69 YEGVRRAY-ELGYDWIWLMDDDAIPDPDALEKLLAYADKDNPQFLAPLVL------D-------P-------DG------ 121 (202)
T ss_pred HHHHHHHh-ccCCCEEEEeCCCCCcChHHHHHHHHHHhcCCceEecceeE------c-------C-------CC------
Confidence 44566665 46789999999999999888777776553 11122211110 0 0 01
Q ss_pred cccCcceecHHHHHHHHHhccccCCCCCchHHHHHHHhc--CCCeeeCCCCc
Q 017688 263 ATGQLYAISKDLASYISINQHVLHKFANEDVSLGSWFIG--LDAEHIDDRRL 312 (367)
Q Consensus 263 ~~G~gYvlS~dla~~I~~~~~~l~~~~~EDV~vG~~l~~--l~v~~~~~~~f 312 (367)
.+++.++.+++.+.+--...... ...||+.++.-+.. ..+ ..+...+
T Consensus 122 -~~~~~~~~~~~~~~~g~~~~~~~-~~~eD~~~~~r~~~~G~~i-~~~~~~~ 170 (202)
T cd04185 122 -SFVGVLISRRVVEKIGLPDKEFF-IWGDDTEYTLRASKAGPGI-YVPDAVV 170 (202)
T ss_pred -ceEEEEEeHHHHHHhCCCChhhh-ccchHHHHHHHHHHcCCcE-EecceEE
Confidence 34567899999887743222222 34699999888854 444 4444333
No 29
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=85.59 E-value=8.4 Score=33.40 Aligned_cols=134 Identities=10% Similarity=0.085 Sum_probs=72.9
Q ss_pred CeEEEEEeccCCCCCchhHHHHHHHhhhCCCEEEecccccCCchhHHHHHHHHHHhhcCCccEEEEeCCceeecHHHHHH
Q 017688 136 GIVMRFVIGHSATSGGILDRAIEAEDKKHGDFLRLEHVEGYLELSAKTKIFFATAVALWDADFYVKVDDDVHVNIATLGA 215 (367)
Q Consensus 136 ~v~~~FvlG~s~~~~~~~~~~L~~E~~~~~Dil~ldf~Dsy~nLt~Kt~~~~~wa~~~~~a~fvlKvDDDvfVn~~~L~~ 215 (367)
.+.++.+-+.+.. . ....+.....++..+..+.....+ . | -.++..+......+|++.+|+|.....+.|..
T Consensus 29 ~~eiivvdd~s~d--~-t~~~~~~~~~~~~~i~~i~~~~n~---G-~-~~a~n~g~~~a~~d~i~~~D~D~~~~~~~l~~ 100 (181)
T cd04187 29 DYEIIFVDDGSTD--R-TLEILRELAARDPRVKVIRLSRNF---G-Q-QAALLAGLDHARGDAVITMDADLQDPPELIPE 100 (181)
T ss_pred CeEEEEEeCCCCc--c-HHHHHHHHHhhCCCEEEEEecCCC---C-c-HHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHH
Confidence 4556666655542 2 233344444556556555543322 1 2 23344444445679999999999999888888
Q ss_pred HHhhcCCCCceEEEEeccC--cccccCCCccccccccccCCCCCccCcCcccCcceecHHHHHHHHH
Q 017688 216 TLARHRSKPRVYIGCMKSG--PVLAQKGVRYHEPEYWKFGEEGNKYFRHATGQLYAISKDLASYISI 280 (367)
Q Consensus 216 ~L~~~~~~~~ly~G~~~~~--pv~r~~~~K~yvp~~~~~g~~~~~Yp~y~~G~gYvlS~dla~~I~~ 280 (367)
.+....+...+.+|..... +..+.-..+.+......+ .....+...|+.+++++++++.+..
T Consensus 101 l~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~r~~~~~i~~ 164 (181)
T cd04187 101 MLAKWEEGYDVVYGVRKNRKESWLKRLTSKLFYRLINKL---SGVDIPDNGGDFRLMDRKVVDALLL 164 (181)
T ss_pred HHHHHhCCCcEEEEEecCCcchHHHHHHHHHHHHHHHHH---cCCCCCCCCCCEEEEcHHHHHHHHh
Confidence 8877555556666664321 110000001110000000 1123345678889999999998764
No 30
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=84.31 E-value=28 Score=30.52 Aligned_cols=177 Identities=13% Similarity=0.027 Sum_probs=88.8
Q ss_pred HHHHHHhhcCCcccccccccCCeEEEEEeccCCCCCchhHHHHHHHhhhCC-CEEEecccccCCchhHHHHHHHHHHhhc
Q 017688 115 DSVRATWMPQGDKRKKLEEEKGIVMRFVIGHSATSGGILDRAIEAEDKKHG-DFLRLEHVEGYLELSAKTKIFFATAVAL 193 (367)
Q Consensus 115 ~aIR~TW~~~~~~l~~l~~~~~v~~~FvlG~s~~~~~~~~~~L~~E~~~~~-Dil~ldf~Dsy~nLt~Kt~~~~~wa~~~ 193 (367)
+.|.++..+-.. . ....+.+++|-..+.+ .....++.-..+++ .+.......+. .... .+..+...
T Consensus 11 ~~l~~~l~sl~~----q-~~~~~eiiVvddgS~d---~t~~~~~~~~~~~~~~~~~~~~~~~~-G~~~----~~n~g~~~ 77 (214)
T cd04196 11 KYLREQLDSILA----Q-TYKNDELIISDDGSTD---GTVEIIKEYIDKDPFIIILIRNGKNL-GVAR----NFESLLQA 77 (214)
T ss_pred HHHHHHHHHHHh----C-cCCCeEEEEEeCCCCC---CcHHHHHHHHhcCCceEEEEeCCCCc-cHHH----HHHHHHHh
Confidence 456666655321 0 1124667777655542 23333444344453 23333232222 2222 22333445
Q ss_pred CCccEEEEeCCceeecHHHHHHHHhh-cC-CCCceEEEEec----cCcccccCC--CccccccccccCCCCCccCcCccc
Q 017688 194 WDADFYVKVDDDVHVNIATLGATLAR-HR-SKPRVYIGCMK----SGPVLAQKG--VRYHEPEYWKFGEEGNKYFRHATG 265 (367)
Q Consensus 194 ~~a~fvlKvDDDvfVn~~~L~~~L~~-~~-~~~~ly~G~~~----~~pv~r~~~--~K~yvp~~~~~g~~~~~Yp~y~~G 265 (367)
.+.+|++..|+|..+.++.|..++.. .. +...++.|.+. .+....... ...+.+.... .......++.|
T Consensus 78 ~~g~~v~~ld~Dd~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 154 (214)
T cd04196 78 ADGDYVFFCDQDDIWLPDKLERLLKAFLKDDKPLLVYSDLELVDENGNPIGESFFEYQKIKPGTSF---NNLLFQNVVTG 154 (214)
T ss_pred CCCCEEEEECCCcccChhHHHHHHHHHhcCCCceEEecCcEEECCCCCCcccccccccccCCccCH---HHHHHhCccCC
Confidence 68999999999999998888888876 22 23334444332 111111100 0000000000 00112345678
Q ss_pred CcceecHHHHHHHHHhccccCCCCCchHHHHHHHhcC-CCeeeCC
Q 017688 266 QLYAISKDLASYISINQHVLHKFANEDVSLGSWFIGL-DAEHIDD 309 (367)
Q Consensus 266 ~gYvlS~dla~~I~~~~~~l~~~~~EDV~vG~~l~~l-~v~~~~~ 309 (367)
+++++.+++++.+..-.... ...||.++...+... .+..++.
T Consensus 155 ~~~~~r~~~~~~~~~~~~~~--~~~~D~~~~~~~~~~~~~~~~~~ 197 (214)
T cd04196 155 CTMAFNRELLELALPFPDAD--VIMHDWWLALLASAFGKVVFLDE 197 (214)
T ss_pred ceeeEEHHHHHhhccccccc--cccchHHHHHHHHHcCceEEcch
Confidence 99999999999876543332 457888887766543 3444443
No 31
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=83.82 E-value=10 Score=34.21 Aligned_cols=151 Identities=13% Similarity=0.136 Sum_probs=78.3
Q ss_pred eEEEEEeccCCCCCchhHHHHHHHhhhCCCEEEecccccCCchhHHHHHHHHHHhhcCCccEEEEeCCceeecHHHHHHH
Q 017688 137 IVMRFVIGHSATSGGILDRAIEAEDKKHGDFLRLEHVEGYLELSAKTKIFFATAVALWDADFYVKVDDDVHVNIATLGAT 216 (367)
Q Consensus 137 v~~~FvlG~s~~~~~~~~~~L~~E~~~~~Dil~ldf~Dsy~nLt~Kt~~~~~wa~~~~~a~fvlKvDDDvfVn~~~L~~~ 216 (367)
..+++|...+. +.....+ .+...+..+.... .+. .-|.. .+..+.+..+.+|++.+|+|+.+..+.|...
T Consensus 29 ~eiivvdd~s~---d~~~~~l-~~~~~~~~~~v~~-~~~----~g~~~-a~n~g~~~a~~d~v~~lD~D~~~~~~~l~~l 98 (235)
T cd06434 29 LEIIVVTDGDD---EPYLSIL-SQTVKYGGIFVIT-VPH----PGKRR-ALAEGIRHVTTDIVVLLDSDTVWPPNALPEM 98 (235)
T ss_pred CEEEEEeCCCC---hHHHHHH-HhhccCCcEEEEe-cCC----CChHH-HHHHHHHHhCCCEEEEECCCceeChhHHHHH
Confidence 45666665543 2233333 3445566655553 111 12332 2334444458999999999999999999988
Q ss_pred HhhcCCCCceEEEEeccCcccccC-CCccc------cc-------cccccCCCCCccCcCcccCcceecHHHHHHHHHhc
Q 017688 217 LARHRSKPRVYIGCMKSGPVLAQK-GVRYH------EP-------EYWKFGEEGNKYFRHATGQLYAISKDLASYISINQ 282 (367)
Q Consensus 217 L~~~~~~~~ly~G~~~~~pv~r~~-~~K~y------vp-------~~~~~g~~~~~Yp~y~~G~gYvlS~dla~~I~~~~ 282 (367)
+.... .+.+ |.+......... ...|. .. ..... . .-...++|.+.++.++++..+.-..
T Consensus 99 ~~~~~-~~~v--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~G~~~~~rr~~l~~~~~~~ 171 (235)
T cd06434 99 LKPFE-DPKV--GGVGTNQRILRPRDSKWSFLAAEYLERRNEEIRAAMSY---D-GGVPCLSGRTAAYRTEILKDFLFLE 171 (235)
T ss_pred HHhcc-CCCE--eEEcCceEeecCcccHHHHHHHHHHHHHHHHHHHHHhh---C-CCEEEccCcHHHHHHHHHhhhhhHH
Confidence 88775 3332 222111000011 01110 00 00000 0 0112357888888888887654321
Q ss_pred c-------ccCCCCCchHHHHHHHhcCCC
Q 017688 283 H-------VLHKFANEDVSLGSWFIGLDA 304 (367)
Q Consensus 283 ~-------~l~~~~~EDV~vG~~l~~l~v 304 (367)
. ..+....||..++.-+...|.
T Consensus 172 ~~~~~~~~~~~~~~~eD~~l~~~~~~~g~ 200 (235)
T cd06434 172 EFTNETFMGRRLNAGDDRFLTRYVLSHGY 200 (235)
T ss_pred HhhhhhhcCCCCCcCchHHHHHHHHHCCC
Confidence 1 123346799999888765443
No 32
>PF13632 Glyco_trans_2_3: Glycosyl transferase family group 2
Probab=82.28 E-value=4.1 Score=35.98 Aligned_cols=115 Identities=15% Similarity=0.087 Sum_probs=66.1
Q ss_pred EEEEeCCceeecHHHHHHHHhhcCCCCce--EEEEeccCcccccCCCccccccc-ccc-----CCCCCccCcCcccCcce
Q 017688 198 FYVKVDDDVHVNIATLGATLARHRSKPRV--YIGCMKSGPVLAQKGVRYHEPEY-WKF-----GEEGNKYFRHATGQLYA 269 (367)
Q Consensus 198 fvlKvDDDvfVn~~~L~~~L~~~~~~~~l--y~G~~~~~pv~r~~~~K~yvp~~-~~~-----g~~~~~Yp~y~~G~gYv 269 (367)
||+-+|+|+-+..+.|.+.+.... .+.+ ..|.+... .....-.++...+. +.. .......+.++.|++.+
T Consensus 1 ~v~~~DaDt~~~~d~l~~~~~~~~-~~~~~~vq~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~ 78 (193)
T PF13632_consen 1 YVLFLDADTRLPPDFLERLVAALE-DPKVDAVQGPIIFR-NRGSLLTRLQDFEYAISHGLSRLSQSSLGRPLFLSGSGML 78 (193)
T ss_pred CEEEEcCCCCCChHHHHHHHHHHh-CCCceEEEccEEec-CCCChhheeehhhhhhhhhhhHHHHHhcCCCccccCccee
Confidence 688999999999999888887765 3332 22222110 00000011111110 000 00112456678999999
Q ss_pred ecHHHHHHHHHhccccCCCCCchHHHHHHHh--cCCCeeeCCCCcccCC
Q 017688 270 ISKDLASYISINQHVLHKFANEDVSLGSWFI--GLDAEHIDDRRLCCGT 316 (367)
Q Consensus 270 lS~dla~~I~~~~~~l~~~~~EDV~vG~~l~--~l~v~~~~~~~f~~~~ 316 (367)
+++++++.+.--. -..+..||..+|.=+. |..+..+++....+..
T Consensus 79 ~r~~~l~~vg~~~--~~~~~~ED~~l~~~l~~~G~~~~~~~~~~~~~~~ 125 (193)
T PF13632_consen 79 FRREALREVGGFD--DPFSIGEDMDLGFRLRRAGYRIVYVPDAIVYTEA 125 (193)
T ss_pred eeHHHHHHhCccc--ccccccchHHHHHHHHHCCCEEEEecccceeeeC
Confidence 9999999875222 1334579999988875 5566677776444443
No 33
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=82.02 E-value=34 Score=29.87 Aligned_cols=114 Identities=15% Similarity=0.096 Sum_probs=61.6
Q ss_pred HHHHhhcCCccEEEEeCCceeecHHHHHHHHhhcCCCC--ceEEEEecc--CcccccCCCcccccc---c-cccCCCCCc
Q 017688 187 FATAVALWDADFYVKVDDDVHVNIATLGATLARHRSKP--RVYIGCMKS--GPVLAQKGVRYHEPE---Y-WKFGEEGNK 258 (367)
Q Consensus 187 ~~wa~~~~~a~fvlKvDDDvfVn~~~L~~~L~~~~~~~--~ly~G~~~~--~pv~r~~~~K~yvp~---~-~~~g~~~~~ 258 (367)
+..+....+.+|++..|+|.++..+.|...+......+ .++.|.+.. .... ....+. .|. . ..+. ...
T Consensus 72 ~N~g~~~a~gd~i~~lD~Dd~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~--~~~ 147 (201)
T cd04195 72 LNEGLKHCTYDWVARMDTDDISLPDRFEKQLDFIEKNPEIDIVGGGVLEFDSDGN-DIGKRR-LPTSHDDILKFA--RRR 147 (201)
T ss_pred HHHHHHhcCCCEEEEeCCccccCcHHHHHHHHHHHhCCCeEEEcccEEEECCCCC-eecccc-CCCCHHHHHHHh--ccC
Confidence 44555555889999999999999988888887653322 344444321 1000 000000 111 0 0110 001
Q ss_pred cCcCcccCcceecHHHHHHHHHhccccCCCCCchHHHHHHHh--cCCCeeeCC
Q 017688 259 YFRHATGQLYAISKDLASYISINQHVLHKFANEDVSLGSWFI--GLDAEHIDD 309 (367)
Q Consensus 259 Yp~y~~G~gYvlS~dla~~I~~~~~~l~~~~~EDV~vG~~l~--~l~v~~~~~ 309 (367)
- + ..|++.++.+.++..+-.-. .....||..+...+. |..+.++++
T Consensus 148 ~-~-~~~~~~~~rr~~~~~~g~~~---~~~~~eD~~~~~r~~~~g~~~~~~~~ 195 (201)
T cd04195 148 S-P-FNHPTVMFRKSKVLAVGGYQ---DLPLVEDYALWARMLANGARFANLPE 195 (201)
T ss_pred C-C-CCChHHhhhHHHHHHcCCcC---CCCCchHHHHHHHHHHcCCceecccH
Confidence 1 1 24566777777776553221 124689999988885 445555544
No 34
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=81.39 E-value=12 Score=32.31 Aligned_cols=114 Identities=15% Similarity=-0.016 Sum_probs=63.1
Q ss_pred HHHHHHhhcCCccEEEEeCCceeecHHHHHHHHhhc--CCCCceEEEEecc--CcccccCCCccccccccccCCCCCccC
Q 017688 185 IFFATAVALWDADFYVKVDDDVHVNIATLGATLARH--RSKPRVYIGCMKS--GPVLAQKGVRYHEPEYWKFGEEGNKYF 260 (367)
Q Consensus 185 ~~~~wa~~~~~a~fvlKvDDDvfVn~~~L~~~L~~~--~~~~~ly~G~~~~--~pv~r~~~~K~yvp~~~~~g~~~~~Yp 260 (367)
..+..+.+..+.+|++.+|+|..+..+.+...+... .+...+..|.... +... ....+. ...... ......
T Consensus 65 ~a~n~~~~~a~~~~v~~ld~D~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~~~-~~~~~~-~~~~~~---~~~~~~ 139 (202)
T cd06433 65 DAMNKGIALATGDIIGFLNSDDTLLPGALLAVVAAFAEHPEVDVVYGDVLLVDENGR-VIGRRR-PPPFLD---KFLLYG 139 (202)
T ss_pred HHHHHHHHHcCCCEEEEeCCCcccCchHHHHHHHHHHhCCCccEEEeeeEEEcCCCC-cccCCC-Ccchhh---hHHhhc
Confidence 334555555578999999999999998888887333 2334555565421 1100 000010 000000 011233
Q ss_pred cCcccCcceecHHHHHHHHHhccccCCCCCchHHHHHHHhcCCCe
Q 017688 261 RHATGQLYAISKDLASYISINQHVLHKFANEDVSLGSWFIGLDAE 305 (367)
Q Consensus 261 ~y~~G~gYvlS~dla~~I~~~~~~l~~~~~EDV~vG~~l~~l~v~ 305 (367)
.+..|++.++++++.+.+-.-...+ ...||..+..-+...+..
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~f~~~~--~~~~D~~~~~r~~~~g~~ 182 (202)
T cd06433 140 MPICHQATFFRRSLFEKYGGFDESY--RIAADYDLLLRLLLAGKI 182 (202)
T ss_pred CcccCcceEEEHHHHHHhCCCchhh--CchhhHHHHHHHHHcCCc
Confidence 4567788899999998875321222 235788776666544433
No 35
>PF04646 DUF604: Protein of unknown function, DUF604; InterPro: IPR006740 This family includes a conserved region found in several uncharacterised plant proteins.
Probab=81.17 E-value=2 Score=41.10 Aligned_cols=52 Identities=17% Similarity=0.139 Sum_probs=39.1
Q ss_pred ccCcceecHHHHHHHHHhcc-cc---CCCCCchHHHHHHHhcCCCeeeCCCCcccC
Q 017688 264 TGQLYAISKDLASYISINQH-VL---HKFANEDVSLGSWFIGLDAEHIDDRRLCCG 315 (367)
Q Consensus 264 ~G~gYvlS~dla~~I~~~~~-~l---~~~~~EDV~vG~~l~~l~v~~~~~~~f~~~ 315 (367)
+|+|++||..||+.|..... .+ +.+.--|--+..|+..++|....+++|+..
T Consensus 12 GGgG~~iS~pLa~~L~~~~d~C~~r~~~~~g~D~~i~~C~~~lgv~LT~e~g~hQ~ 67 (255)
T PF04646_consen 12 GGGGFAISYPLAKALAKMQDDCIERYPHLYGGDQRIQACIAELGVPLTKEPGFHQM 67 (255)
T ss_pred cCceeEEcHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCceecCCceeE
Confidence 89999999999999998532 22 333447999999998787776666777653
No 36
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=79.59 E-value=12 Score=32.27 Aligned_cols=96 Identities=14% Similarity=0.049 Sum_probs=58.4
Q ss_pred HHHHhhcCCccEEEEeCCceeecHHHHHHHHhhcCCCCceEEEEeccCcccccCCCccccccccccCCCCCccCcCcccC
Q 017688 187 FATAVALWDADFYVKVDDDVHVNIATLGATLARHRSKPRVYIGCMKSGPVLAQKGVRYHEPEYWKFGEEGNKYFRHATGQ 266 (367)
Q Consensus 187 ~~wa~~~~~a~fvlKvDDDvfVn~~~L~~~L~~~~~~~~ly~G~~~~~pv~r~~~~K~yvp~~~~~g~~~~~Yp~y~~G~ 266 (367)
+..+.+....+|++..|+|..+..+.|...+....+ .....|... +... . .-.....|+
T Consensus 71 ~n~g~~~a~g~~i~~lD~D~~~~~~~l~~~~~~~~~-~~~v~g~~~------------~~~~-------~-~~~~~~~~~ 129 (182)
T cd06420 71 RNKAIAAAKGDYLIFIDGDCIPHPDFIADHIELAEP-GVFLSGSRV------------LLNE-------K-LTERGIRGC 129 (182)
T ss_pred HHHHHHHhcCCEEEEEcCCcccCHHHHHHHHHHhCC-CcEEeccee------------eccc-------c-cceeEeccc
Confidence 444555567899999999999998888888876632 222223321 0000 0 000234577
Q ss_pred cceecHHHHHHHHHhccccCCCCCchHHHHHHHhcCC
Q 017688 267 LYAISKDLASYISINQHVLHKFANEDVSLGSWFIGLD 303 (367)
Q Consensus 267 gYvlS~dla~~I~~~~~~l~~~~~EDV~vG~~l~~l~ 303 (367)
++++.+..+..+-.-......+..||+.++.=+...|
T Consensus 130 ~~~~~r~~~~~~ggf~~~~~~~~~eD~~l~~r~~~~g 166 (182)
T cd06420 130 NMSFWKKDLLAVNGFDEEFTGWGGEDSELVARLLNSG 166 (182)
T ss_pred eEEEEHHHHHHhCCCCcccccCCcchHHHHHHHHHcC
Confidence 7888888877544333333334579999988886555
No 37
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=78.52 E-value=47 Score=29.95 Aligned_cols=114 Identities=18% Similarity=0.130 Sum_probs=62.8
Q ss_pred HHHHHhhc--CCccEEEEeCCceeecHHHHHHHHhhcCCCCceEEEEeccCcccccCCCcccccc-ccc----cC--CCC
Q 017688 186 FFATAVAL--WDADFYVKVDDDVHVNIATLGATLARHRSKPRVYIGCMKSGPVLAQKGVRYHEPE-YWK----FG--EEG 256 (367)
Q Consensus 186 ~~~wa~~~--~~a~fvlKvDDDvfVn~~~L~~~L~~~~~~~~ly~G~~~~~pv~r~~~~K~yvp~-~~~----~g--~~~ 256 (367)
++.++.+. .+.+|++..|+|+.+..+.|..++.... .+.+ |.+......++....++... .|. |. .+.
T Consensus 73 a~n~g~~~a~~~~d~i~~lD~D~~~~~~~l~~l~~~~~-~~~~--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (236)
T cd06435 73 ALNYALERTAPDAEIIAVIDADYQVEPDWLKRLVPIFD-DPRV--GFVQAPQDYRDGEESLFKRMCYAEYKGFFDIGMVS 149 (236)
T ss_pred HHHHHHHhcCCCCCEEEEEcCCCCcCHHHHHHHHHHhc-CCCe--eEEecCccccCCCccHHHHHHhHHHHHHHHHHhcc
Confidence 46666653 3579999999999999999999887764 3332 33211000111111111100 000 00 000
Q ss_pred -Cc-cCcCcccCcceecHHHHHHHHHhccccCCCCCchHHHHHHHhcCCCe
Q 017688 257 -NK-YFRHATGQLYAISKDLASYISINQHVLHKFANEDVSLGSWFIGLDAE 305 (367)
Q Consensus 257 -~~-Yp~y~~G~gYvlS~dla~~I~~~~~~l~~~~~EDV~vG~~l~~l~v~ 305 (367)
.. --.++.|.+.++++++...+---.. .+..||+-++.=+...|.+
T Consensus 150 ~~~~~~~~~~g~~~~~rr~~~~~iGgf~~---~~~~eD~dl~~r~~~~G~~ 197 (236)
T cd06435 150 RNERNAIIQHGTMCLIRRSALDDVGGWDE---WCITEDSELGLRMHEAGYI 197 (236)
T ss_pred ccccCceEEecceEEEEHHHHHHhCCCCC---ccccchHHHHHHHHHCCcE
Confidence 00 0124678889999999998743222 2348999998887655433
No 38
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=76.79 E-value=20 Score=30.78 Aligned_cols=135 Identities=9% Similarity=-0.024 Sum_probs=69.6
Q ss_pred eEEEEEeccCCCCCchhHHHHHHHhhhCCCEEEecccccCCchhHHHHHHHHHHhhcCCccEEEEeCCceeecHHHHHHH
Q 017688 137 IVMRFVIGHSATSGGILDRAIEAEDKKHGDFLRLEHVEGYLELSAKTKIFFATAVALWDADFYVKVDDDVHVNIATLGAT 216 (367)
Q Consensus 137 v~~~FvlG~s~~~~~~~~~~L~~E~~~~~Dil~ldf~Dsy~nLt~Kt~~~~~wa~~~~~a~fvlKvDDDvfVn~~~L~~~ 216 (367)
..++.+...+. +.....+..-..++..+..+....... .-..+..+.++...+|++..|+|..+..+.|.++
T Consensus 29 ~eiivvd~~s~---d~~~~~~~~~~~~~~~~~~~~~~~n~G-----~~~a~n~g~~~a~gd~i~~lD~D~~~~~~~l~~l 100 (185)
T cd04179 29 YEIIVVDDGST---DGTAEIARELAARVPRVRVIRLSRNFG-----KGAAVRAGFKAARGDIVVTMDADLQHPPEDIPKL 100 (185)
T ss_pred EEEEEEcCCCC---CChHHHHHHHHHhCCCeEEEEccCCCC-----ccHHHHHHHHHhcCCEEEEEeCCCCCCHHHHHHH
Confidence 44555554443 223444555455566654444443332 1234445555445699999999999999999888
Q ss_pred Hhh-cCCCCceEEEEecc-CcccccC-CCcccccc-ccccCCCCCccCcCcccCcceecHHHHHHHH
Q 017688 217 LAR-HRSKPRVYIGCMKS-GPVLAQK-GVRYHEPE-YWKFGEEGNKYFRHATGQLYAISKDLASYIS 279 (367)
Q Consensus 217 L~~-~~~~~~ly~G~~~~-~pv~r~~-~~K~yvp~-~~~~g~~~~~Yp~y~~G~gYvlS~dla~~I~ 279 (367)
+.. ......+.+|.... ......+ ..++.... .+.+..-...-.....|+.+++++++++.+.
T Consensus 101 ~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~ 167 (185)
T cd04179 101 LEKLLEGGADVVIGSRFVRGGGAGMPLLRRLGSRLFNFLIRLLLGVRISDTQSGFRLFRREVLEALL 167 (185)
T ss_pred HHHHhccCCcEEEEEeecCCCcccchHHHHHHHHHHHHHHHHHcCCCCcCCCCceeeeHHHHHHHHH
Confidence 886 44445566666331 1000000 00000000 0000000011123356778899999999985
No 39
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=76.12 E-value=97 Score=31.70 Aligned_cols=161 Identities=13% Similarity=0.119 Sum_probs=85.6
Q ss_pred CeEEEEEeccCCCCCchhHHHHHHHhhhCCCEEEecccccCCchhHHHHHHHHHHhhcCCccEEEEeCCceeecHHHHHH
Q 017688 136 GIVMRFVIGHSATSGGILDRAIEAEDKKHGDFLRLEHVEGYLELSAKTKIFFATAVALWDADFYVKVDDDVHVNIATLGA 215 (367)
Q Consensus 136 ~v~~~FvlG~s~~~~~~~~~~L~~E~~~~~Dil~ldf~Dsy~nLt~Kt~~~~~wa~~~~~a~fvlKvDDDvfVn~~~L~~ 215 (367)
...++++...+. +...+.+++..+++..+...... .|.. |. .+++.+....+.+|++..|.|..+..+.|..
T Consensus 104 ~~eIivVdDgs~---D~t~~~~~~~~~~~~~v~vv~~~---~n~G-ka-~AlN~gl~~a~~d~iv~lDAD~~~~~d~L~~ 175 (444)
T PRK14583 104 NIEVIAINDGSS---DDTAQVLDALLAEDPRLRVIHLA---HNQG-KA-IALRMGAAAARSEYLVCIDGDALLDKNAVPY 175 (444)
T ss_pred CeEEEEEECCCC---ccHHHHHHHHHHhCCCEEEEEeC---CCCC-HH-HHHHHHHHhCCCCEEEEECCCCCcCHHHHHH
Confidence 456666655443 22334454445566655443322 2222 33 3456666656899999999999999999988
Q ss_pred HHhhcCCCCceEEEEeccCcccccCC---Cccccccccc-cCC--C-CC--ccCcCcccCcceecHHHHHHHHHhccccC
Q 017688 216 TLARHRSKPRVYIGCMKSGPVLAQKG---VRYHEPEYWK-FGE--E-GN--KYFRHATGQLYAISKDLASYISINQHVLH 286 (367)
Q Consensus 216 ~L~~~~~~~~ly~G~~~~~pv~r~~~---~K~yvp~~~~-~g~--~-~~--~Yp~y~~G~gYvlS~dla~~I~~~~~~l~ 286 (367)
.+......++ +|.+.+.+..++.. .+....+... +|. + .. .-+..++|.+.++.+++++.+---. +
T Consensus 176 lv~~~~~~~~--~g~v~g~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~g~~~~~sG~~~~~rr~al~~vGg~~---~ 250 (444)
T PRK14583 176 LVAPLIANPR--TGAVTGNPRIRTRSTLIGRVQVGEFSSIIGLIKRTQRVYGQVFTVSGVVAAFRRRALADVGYWS---P 250 (444)
T ss_pred HHHHHHhCCC--eEEEEccceecCCCcchhhHHHHHHHHHHHHHHHHHHHhCCceEecCceeEEEHHHHHHcCCCC---C
Confidence 8876533333 24443222222211 1111111000 000 0 00 0112357888999999988764222 1
Q ss_pred CCCCchHHHHHHHhcC--CCeeeCC
Q 017688 287 KFANEDVSLGSWFIGL--DAEHIDD 309 (367)
Q Consensus 287 ~~~~EDV~vG~~l~~l--~v~~~~~ 309 (367)
..-.||..+|.-+... .+...++
T Consensus 251 ~~i~ED~dl~~rl~~~G~~i~~~p~ 275 (444)
T PRK14583 251 DMITEDIDISWKLQLKHWSVFFEPR 275 (444)
T ss_pred CcccccHHHHHHHHHcCCeEEEeec
Confidence 2236999999988644 4445443
No 40
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=74.88 E-value=63 Score=28.97 Aligned_cols=125 Identities=14% Similarity=0.003 Sum_probs=63.6
Q ss_pred HHHHHHhhcCCccEEEEeCCceeecHHHHHHHH---hhcCCCCce-EEEEeccCcccccCCCccccccc-----cccCCC
Q 017688 185 IFFATAVALWDADFYVKVDDDVHVNIATLGATL---ARHRSKPRV-YIGCMKSGPVLAQKGVRYHEPEY-----WKFGEE 255 (367)
Q Consensus 185 ~~~~wa~~~~~a~fvlKvDDDvfVn~~~L~~~L---~~~~~~~~l-y~G~~~~~pv~r~~~~K~yvp~~-----~~~g~~ 255 (367)
.+++.+.. .+++|++..|+|+.+.++.|..++ ......+.+ .+|..............+..... .... .
T Consensus 66 ~g~~~a~~-~~~d~v~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 143 (237)
T cd02526 66 IGIKAALE-NGADYVLLFDQDSVPPPDMVEKLLAYKILSDKNSNIGAVGPRIIDRRTGENSPGVRKSGYKLRIQKEGE-E 143 (237)
T ss_pred HHHHHHHh-CCCCEEEEECCCCCcCHhHHHHHHHHHHhhccCCCeEEEeeeEEcCCCCeeccceeccCccceeccccc-C
Confidence 34555433 278999999999999999888885 323223332 23332110000000000000000 0000 0
Q ss_pred CCccCcCcccCcceecHHHHHHHHHhccccCCCCCchHHHHHHHhcC--CCeeeCCCCc
Q 017688 256 GNKYFRHATGQLYAISKDLASYISINQHVLHKFANEDVSLGSWFIGL--DAEHIDDRRL 312 (367)
Q Consensus 256 ~~~Yp~y~~G~gYvlS~dla~~I~~~~~~l~~~~~EDV~vG~~l~~l--~v~~~~~~~f 312 (367)
...-..++.|++.++++++...+-.-...+ .+..||+.++.-+... .+...++...
T Consensus 144 ~~~~~~~~~~~~~~~rr~~~~~~ggfd~~~-~~~~eD~d~~~r~~~~G~~~~~~~~~~v 201 (237)
T cd02526 144 GLKEVDFLITSGSLISLEALEKVGGFDEDL-FIDYVDTEWCLRARSKGYKIYVVPDAVL 201 (237)
T ss_pred CceEeeeeeccceEEcHHHHHHhCCCCHHH-cCccchHHHHHHHHHcCCcEEEEcCeEE
Confidence 011123456788899999988874322222 2346899998888544 4545444433
No 41
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=73.08 E-value=78 Score=32.41 Aligned_cols=126 Identities=10% Similarity=0.120 Sum_probs=67.4
Q ss_pred HHHHHHhhcCCccEEEEeCCceeecHHHHHHHHhhcCCCCce--EEEEeccCc-ccccCCCc--ccccc--------ccc
Q 017688 185 IFFATAVALWDADFYVKVDDDVHVNIATLGATLARHRSKPRV--YIGCMKSGP-VLAQKGVR--YHEPE--------YWK 251 (367)
Q Consensus 185 ~~~~wa~~~~~a~fvlKvDDDvfVn~~~L~~~L~~~~~~~~l--y~G~~~~~p-v~r~~~~K--~yvp~--------~~~ 251 (367)
.++.++.+..+.+|++..|+|..+..+.|.+.+......+.+ ..|.+...+ ........ .+... .+.
T Consensus 121 ~AlN~gl~~s~g~~v~~~DaD~~~~~d~L~~l~~~f~~~~~v~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~l 200 (439)
T TIGR03111 121 KALNAAIYNSIGKYIIHIDSDGKLHKDAIKNMVTRFENNPDIHAMTGVILTDKELIEKTKGRFLKLIRRCEYFEYAQAFL 200 (439)
T ss_pred HHHHHHHHHccCCEEEEECCCCCcChHHHHHHHHHHHhCCCeEEEEeEEecCchhhhhhcchhhhHhHHhHHHHHHHHHH
Confidence 345666666688999999999999999999888776433433 234432211 00000000 01110 000
Q ss_pred cCC---CCCccCcCcccCcceecHHHHHHHHHhccccCCCCCchHHHHHHHh---cCCCeeeCCCCcc
Q 017688 252 FGE---EGNKYFRHATGQLYAISKDLASYISINQHVLHKFANEDVSLGSWFI---GLDAEHIDDRRLC 313 (367)
Q Consensus 252 ~g~---~~~~Yp~y~~G~gYvlS~dla~~I~~~~~~l~~~~~EDV~vG~~l~---~l~v~~~~~~~f~ 313 (367)
.|. .....+..++|++.++.++++..+---. ...-.||..++.=+. +-.+...++..+.
T Consensus 201 ~~r~~~s~~~~~~~~sGa~~~~Rr~~l~~vggf~---~~~i~ED~~l~~rl~~~~g~kv~~~~~a~~~ 265 (439)
T TIGR03111 201 AGRNFESQVNSLFTLSGAFSAFRRETILKTQLYN---SETVGEDTDMTFQIRELLDGKVYLCENAIFY 265 (439)
T ss_pred hhhHHHHhcCCeEEEccHHHhhhHHHHHHhCCCC---CCCcCccHHHHHHHHHhcCCeEEECCCCEEE
Confidence 000 0001222367888899999887653211 112389999987553 3344444444443
No 42
>cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GLCNAC-T I , GNT-I) transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide, an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus. The catalytic domain is located at the C-terminus. These proteins are members of the glycosy transferase family 13.
Probab=71.95 E-value=17 Score=36.33 Aligned_cols=82 Identities=16% Similarity=0.285 Sum_probs=52.2
Q ss_pred HHHHHHhhcCCccEEEEeCCceeecHH---HHHHHHhhcCCCCceEEEEeccCcccccCCCcccc---ccccccCCCCCc
Q 017688 185 IFFATAVALWDADFYVKVDDDVHVNIA---TLGATLARHRSKPRVYIGCMKSGPVLAQKGVRYHE---PEYWKFGEEGNK 258 (367)
Q Consensus 185 ~~~~wa~~~~~a~fvlKvDDDvfVn~~---~L~~~L~~~~~~~~ly~G~~~~~pv~r~~~~K~yv---p~~~~~g~~~~~ 258 (367)
.++.|+....++++++-+|||..+.++ -+...|..+...++++ |+.+-- +.+.+..+ |...|+.
T Consensus 87 ~aln~vF~~~~~~~vIILEDDl~~sPdFf~yf~~~l~~y~~D~~v~--~ISa~N---dnG~~~~~~~~~~~lyrs----- 156 (334)
T cd02514 87 WALTQTFNLFGYSFVIILEDDLDIAPDFFSYFQATLPLLEEDPSLW--CISAWN---DNGKEHFVDDTPSLLYRT----- 156 (334)
T ss_pred HHHHHHHHhcCCCEEEEECCCCccCHhHHHHHHHHHHHHhcCCCEE--EEEeec---cCCcccccCCCcceEEEe-----
Confidence 367777665589999999999999998 4456666665566654 432100 11111111 3333321
Q ss_pred cCcCcccCcceecHHHHHHH
Q 017688 259 YFRHATGQLYAISKDLASYI 278 (367)
Q Consensus 259 Yp~y~~G~gYvlS~dla~~I 278 (367)
.|+.|.|+++.+++-..+
T Consensus 157 --~ff~glGWml~r~~W~e~ 174 (334)
T cd02514 157 --DFFPGLGWMLTRKLWKEL 174 (334)
T ss_pred --cCCCchHHHHHHHHHHHh
Confidence 367899999999999887
No 43
>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=71.42 E-value=90 Score=31.10 Aligned_cols=194 Identities=13% Similarity=0.049 Sum_probs=106.1
Q ss_pred eeEEEEEECCCCCH-HHHHHHHHHhhcCCcccccccccCCeEEEEEeccCCCCCchhHHHHHHHhhhCCCEEEecccccC
Q 017688 98 YLMVVGINSAFSSR-KRRDSVRATWMPQGDKRKKLEEEKGIVMRFVIGHSATSGGILDRAIEAEDKKHGDFLRLEHVEGY 176 (367)
Q Consensus 98 ~~llI~V~S~p~~~-~rR~aIR~TW~~~~~~l~~l~~~~~v~~~FvlG~s~~~~~~~~~~L~~E~~~~~Dil~ldf~Dsy 176 (367)
+.+-|.|.+--... --.+.++..=... -....++.|...+. +..-+.+.+-..+++..+.....
T Consensus 54 p~vsviiP~ynE~~~~~~~~l~s~~~~d---------yp~~evivv~d~~~---d~~~~~~~~~~~~~~~~~~~~~~--- 118 (439)
T COG1215 54 PKVSVIIPAYNEEPEVLEETLESLLSQD---------YPRYEVIVVDDGST---DETYEILEELGAEYGPNFRVIYP--- 118 (439)
T ss_pred CceEEEEecCCCchhhHHHHHHHHHhCC---------CCCceEEEECCCCC---hhHHHHHHHHHhhcCcceEEEec---
Confidence 55666666554433 2233333333222 12355666665443 23444555556666544444422
Q ss_pred CchhHHHHHHHHHHhhcCCccEEEEeCCceeecHHHHHHHHhhcCCCCce-EEEEec--cCcccccCCCccccccc----
Q 017688 177 LELSAKTKIFFATAVALWDADFYVKVDDDVHVNIATLGATLARHRSKPRV-YIGCMK--SGPVLAQKGVRYHEPEY---- 249 (367)
Q Consensus 177 ~nLt~Kt~~~~~wa~~~~~a~fvlKvDDDvfVn~~~L~~~L~~~~~~~~l-y~G~~~--~~pv~r~~~~K~yvp~~---- 249 (367)
.+-...-...+.++...-+.++++..|-|+.+..+.|.+.+......+.. +.|... .++.......+-..-++
T Consensus 119 ~~~~~gK~~al~~~l~~~~~d~V~~~DaD~~~~~d~l~~~~~~f~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 198 (439)
T COG1215 119 EKKNGGKAGALNNGLKRAKGDVVVILDADTVPEPDALRELVSPFEDPPVGAVVGTPRIRNRPDPSNLLGRIQAIEYLSAF 198 (439)
T ss_pred cccCccchHHHHHHHhhcCCCEEEEEcCCCCCChhHHHHHHhhhcCCCeeEEeCCceeeecCChhhhcchhcchhhhhhH
Confidence 01112224456677666679999999999999999999999887544333 333321 00000000001000000
Q ss_pred ---cccCCCCCccCcCcccCcceecHHHHHHHHHhccccCCCCCchHHHHHHHh--cCCCeeeCCC
Q 017688 250 ---WKFGEEGNKYFRHATGQLYAISKDLASYISINQHVLHKFANEDVSLGSWFI--GLDAEHIDDR 310 (367)
Q Consensus 250 ---~~~g~~~~~Yp~y~~G~gYvlS~dla~~I~~~~~~l~~~~~EDV~vG~~l~--~l~v~~~~~~ 310 (367)
+... ........++|.+.++.+++++.+-. .....--||..++..+. |..+..+++.
T Consensus 199 ~~~~~~~-~~~g~~~~~~G~~~~~rr~aL~~~g~---~~~~~i~ED~~lt~~l~~~G~~~~~~~~~ 260 (439)
T COG1215 199 YFRLRAA-SKGGLISFLSGSSSAFRRSALEEVGG---WLEDTITEDADLTLRLHLRGYRVVYVPEA 260 (439)
T ss_pred HHhhhhh-hhcCCeEEEcceeeeEEHHHHHHhCC---CCCCceeccHHHHHHHHHCCCeEEEeecc
Confidence 0000 12235778999999999999998872 22333469999999996 4556666544
No 44
>COG1216 Predicted glycosyltransferases [General function prediction only]
Probab=71.05 E-value=25 Score=33.96 Aligned_cols=137 Identities=14% Similarity=0.018 Sum_probs=74.0
Q ss_pred CCCEEEecccccCCchhHHHHHHHHHHhhcCCccEEEEeCCceeecHHHHHHHHhhcCCCCce-EEEEecc---Ccc---
Q 017688 164 HGDFLRLEHVEGYLELSAKTKIFFATAVALWDADFYVKVDDDVHVNIATLGATLARHRSKPRV-YIGCMKS---GPV--- 236 (367)
Q Consensus 164 ~~Dil~ldf~Dsy~nLt~Kt~~~~~wa~~~~~a~fvlKvDDDvfVn~~~L~~~L~~~~~~~~l-y~G~~~~---~pv--- 236 (367)
+.++..+...++.-= ..=.-.+++.|....+ +|++-.++|+.+..+.|.++|+.....+.. ..|.... ++.
T Consensus 55 ~~~v~~i~~~~NlG~-agg~n~g~~~a~~~~~-~~~l~LN~D~~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~ 132 (305)
T COG1216 55 FPNVRLIENGENLGF-AGGFNRGIKYALAKGD-DYVLLLNPDTVVEPDLLEELLKAAEEDPAAGVVGPLIRNYDESLYID 132 (305)
T ss_pred CCcEEEEEcCCCccc-hhhhhHHHHHHhcCCC-cEEEEEcCCeeeChhHHHHHHHHHHhCCCCeEeeeeEecCCCCcchh
Confidence 667766554333210 0011145556554222 299999999999999999999877544433 3333221 111
Q ss_pred cccC-----CCcc-ccccccccCC--CCCccCcCcccCcceecHHHHHHHHHhccccCCCCCchHHHHHHHhcCC
Q 017688 237 LAQK-----GVRY-HEPEYWKFGE--EGNKYFRHATGQLYAISKDLASYISINQHVLHKFANEDVSLGSWFIGLD 303 (367)
Q Consensus 237 ~r~~-----~~K~-yvp~~~~~g~--~~~~Yp~y~~G~gYvlS~dla~~I~~~~~~l~~~~~EDV~vG~~l~~l~ 303 (367)
.+.. ...| +.+......+ +......+++|++.++++++.+.+--- ..--.+..||+-++.=+...|
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~li~~~~~~~vG~~-de~~F~y~eD~D~~~R~~~~G 206 (305)
T COG1216 133 RRGGESDGLTGGWRASPLLEIAPDLSSYLEVVASLSGACLLIRREAFEKVGGF-DERFFIYYEDVDLCLRARKAG 206 (305)
T ss_pred eeccccccccccceecccccccccccchhhhhhhcceeeeEEcHHHHHHhCCC-CcccceeehHHHHHHHHHHcC
Confidence 0110 0011 1111000000 011122247899999999999998762 222234699999988886555
No 45
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=69.75 E-value=85 Score=28.29 Aligned_cols=118 Identities=14% Similarity=0.094 Sum_probs=61.0
Q ss_pred HHHHHhhcCCccEEEEeCCceeecHHHHHHHHhhcCCCCceEEEEeccCcccccCCCcccc-----cccccc-----CCC
Q 017688 186 FFATAVALWDADFYVKVDDDVHVNIATLGATLARHRSKPRVYIGCMKSGPVLAQKGVRYHE-----PEYWKF-----GEE 255 (367)
Q Consensus 186 ~~~wa~~~~~a~fvlKvDDDvfVn~~~L~~~L~~~~~~~~ly~G~~~~~pv~r~~~~K~yv-----p~~~~~-----g~~ 255 (367)
.+..+.+..+.+|++.+|.|+.+..+.|...+... ..+. +|.+.+.....++...|.. +..+.+ +..
T Consensus 78 a~n~g~~~a~~~~i~~~DaD~~~~~~~l~~~~~~~-~~~~--v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (232)
T cd06437 78 ALAEGMKVAKGEYVAIFDADFVPPPDFLQKTPPYF-ADPK--LGFVQTRWGHINANYSLLTRVQAMSLDYHFTIEQVARS 154 (232)
T ss_pred HHHHHHHhCCCCEEEEEcCCCCCChHHHHHhhhhh-cCCC--eEEEecceeeEcCCCchhhHhhhhhHHhhhhHhHhhHh
Confidence 34555555689999999999999999988855443 2233 2333221111111111110 000000 000
Q ss_pred CCccCcCcccCcceecHHHHHHHHHhccccCCCCCchHHHHHHHhcCC--CeeeCC
Q 017688 256 GNKYFRHATGQLYAISKDLASYISINQHVLHKFANEDVSLGSWFIGLD--AEHIDD 309 (367)
Q Consensus 256 ~~~Yp~y~~G~gYvlS~dla~~I~~~~~~l~~~~~EDV~vG~~l~~l~--v~~~~~ 309 (367)
.......+.|++-++.+++...+---.. ....||+.++.-+...| +..+++
T Consensus 155 ~~~~~~~~~g~~~~~rr~~~~~vgg~~~---~~~~ED~~l~~rl~~~G~~~~~~~~ 207 (232)
T cd06437 155 STGLFFNFNGTAGVWRKECIEDAGGWNH---DTLTEDLDLSYRAQLKGWKFVYLDD 207 (232)
T ss_pred hcCCeEEeccchhhhhHHHHHHhCCCCC---CcchhhHHHHHHHHHCCCeEEEecc
Confidence 0111112356666788888877632111 23479999998886444 444443
No 46
>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ].
Probab=69.59 E-value=87 Score=29.84 Aligned_cols=165 Identities=13% Similarity=0.089 Sum_probs=90.9
Q ss_pred cCCeEEEEEeccCCCCCchhHHHHHHHhhhCCCE-E-EecccccCCchhHHHHHHHHHHhhcCCccEEEEeCCceeecHH
Q 017688 134 EKGIVMRFVIGHSATSGGILDRAIEAEDKKHGDF-L-RLEHVEGYLELSAKTKIFFATAVALWDADFYVKVDDDVHVNIA 211 (367)
Q Consensus 134 ~~~v~~~FvlG~s~~~~~~~~~~L~~E~~~~~Di-l-~ldf~Dsy~nLt~Kt~~~~~wa~~~~~a~fvlKvDDDvfVn~~ 211 (367)
...+.+++|-+.+.. .....|..-.+.++-+ + ..+......+.+. +..-+++....+|++..|.|+++..+
T Consensus 32 ~~~~eiIvvd~~s~~---~~~~~l~~~~~~~~~~~~i~~~~~~~~f~~a~----arN~g~~~A~~d~l~flD~D~i~~~~ 104 (281)
T PF10111_consen 32 DPDFEIIVVDDGSSD---EFDEELKKLCEKNGFIRYIRHEDNGEPFSRAK----ARNIGAKYARGDYLIFLDADCIPSPD 104 (281)
T ss_pred CCCEEEEEEECCCch---hHHHHHHHHHhccCceEEEEcCCCCCCcCHHH----HHHHHHHHcCCCEEEEEcCCeeeCHH
Confidence 456778887776542 3345566666666655 2 2222222223332 23344444589999999999999999
Q ss_pred HHHHHHh---hcCCCC-ceEEEEe-c-c--C--cccccCCCcccc--ccccccCCCCCccC-cCcccCcceecHHHHHHH
Q 017688 212 TLGATLA---RHRSKP-RVYIGCM-K-S--G--PVLAQKGVRYHE--PEYWKFGEEGNKYF-RHATGQLYAISKDLASYI 278 (367)
Q Consensus 212 ~L~~~L~---~~~~~~-~ly~G~~-~-~--~--pv~r~~~~K~yv--p~~~~~g~~~~~Yp-~y~~G~gYvlS~dla~~I 278 (367)
.|...+. .....+ .++++-+ . . + .........|.. -+... ....+.+. ....|++.+++++.-..|
T Consensus 105 ~i~~~~~~~~~l~~~~~~~~~~p~~yl~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~s~~~~i~r~~f~~i 183 (281)
T PF10111_consen 105 FIEKLLNHVKKLDKNPNAFLVYPCLYLSEEGSEKFYSQFKNLWDHEFLESFI-SGKNSLWEFIAFASSCFLINREDFLEI 183 (281)
T ss_pred HHHHHHHHHHHHhcCCCceEEEeeeeccchhhHHHhhcchhcchHHHHHHHh-hccccccccccccceEEEEEHHHHHHh
Confidence 9999988 443222 3333222 1 1 1 010000000100 00000 00011111 223469999999998888
Q ss_pred HHhccccCCCCCchHHHHHHHhcCCCee
Q 017688 279 SINQHVLHKFANEDVSLGSWFIGLDAEH 306 (367)
Q Consensus 279 ~~~~~~l~~~~~EDV~vG~~l~~l~v~~ 306 (367)
----.....+..||.-++.=|...+...
T Consensus 184 GGfDE~f~G~G~ED~D~~~RL~~~~~~~ 211 (281)
T PF10111_consen 184 GGFDERFRGWGYEDIDFGYRLKKAGYKF 211 (281)
T ss_pred CCCCccccCCCcchHHHHHHHHHcCCcE
Confidence 7655666667899999998887665443
No 47
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=69.23 E-value=24 Score=30.79 Aligned_cols=89 Identities=17% Similarity=0.069 Sum_probs=52.4
Q ss_pred HHHHHHhh-cCCccEEEEeCCceeecHHHHHHHHhhcCCCCceEEEEeccCcccccCCCccccc---ccc-------ccC
Q 017688 185 IFFATAVA-LWDADFYVKVDDDVHVNIATLGATLARHRSKPRVYIGCMKSGPVLAQKGVRYHEP---EYW-------KFG 253 (367)
Q Consensus 185 ~~~~wa~~-~~~a~fvlKvDDDvfVn~~~L~~~L~~~~~~~~ly~G~~~~~pv~r~~~~K~yvp---~~~-------~~g 253 (367)
.++.++.. -.+.+|++.+|.|+.+.++.|..++........+..|+.... .+...|.-. ..+ ..+
T Consensus 70 ~g~~~a~~~~~~~d~v~~~DaD~~~~p~~l~~l~~~~~~~~~~v~g~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (183)
T cd06438 70 FGFRHLLNLADDPDAVVVFDADNLVDPNALEELNARFAAGARVVQAYYNSK----NPDDSWITRLYAFAFLVFNRLRPLG 145 (183)
T ss_pred HHHHHHHhcCCCCCEEEEEcCCCCCChhHHHHHHHHHhhCCCeeEEEEeee----CCccCHHHHHHHHHHHHHHHHHHHH
Confidence 34444432 246899999999999999888888877755556666664321 111122100 000 000
Q ss_pred CCCCccCcCcccCcceecHHHHHH
Q 017688 254 EEGNKYFRHATGQLYAISKDLASY 277 (367)
Q Consensus 254 ~~~~~Yp~y~~G~gYvlS~dla~~ 277 (367)
...-.-+.++.|+++++++++++.
T Consensus 146 ~~~~~~~~~~~G~~~~~rr~~l~~ 169 (183)
T cd06438 146 RSNLGLSCQLGGTGMCFPWAVLRQ 169 (183)
T ss_pred HHHcCCCeeecCchhhhHHHHHHh
Confidence 000122335789999999999988
No 48
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=68.90 E-value=1e+02 Score=30.21 Aligned_cols=133 Identities=8% Similarity=0.025 Sum_probs=69.5
Q ss_pred CeEEEEEeccCCCCCchhHHHHHHHhhhCCC-EEEecccccCCchhHHHHHHHHHHhhcCCccEEEEeCCceeecHHHHH
Q 017688 136 GIVMRFVIGHSATSGGILDRAIEAEDKKHGD-FLRLEHVEGYLELSAKTKIFFATAVALWDADFYVKVDDDVHVNIATLG 214 (367)
Q Consensus 136 ~v~~~FvlG~s~~~~~~~~~~L~~E~~~~~D-il~ldf~Dsy~nLt~Kt~~~~~wa~~~~~a~fvlKvDDDvfVn~~~L~ 214 (367)
.+.+++|-..|.+ . ..+.+++-.+.+++ ++......++. |.- ++....+..+.+|++-+|.|.-.+++.+.
T Consensus 38 ~~EIIvVDDgS~D--~-T~~il~~~~~~~~~~v~~i~~~~n~G----~~~-A~~~G~~~A~gd~vv~~DaD~q~~p~~i~ 109 (325)
T PRK10714 38 EYEILLIDDGSSD--N-SAEMLVEAAQAPDSHIVAILLNRNYG----QHS-AIMAGFSHVTGDLIITLDADLQNPPEEIP 109 (325)
T ss_pred CEEEEEEeCCCCC--c-HHHHHHHHHhhcCCcEEEEEeCCCCC----HHH-HHHHHHHhCCCCEEEEECCCCCCCHHHHH
Confidence 4678888776653 2 22233332334444 44333333321 111 23333344578999999999999999998
Q ss_pred HHHhhcCCCCceEEEEecc--CcccccCCCcccccc-ccccCCCCCccCcCcccCcceecHHHHHHHHH
Q 017688 215 ATLARHRSKPRVYIGCMKS--GPVLAQKGVRYHEPE-YWKFGEEGNKYFRHATGQLYAISKDLASYISI 280 (367)
Q Consensus 215 ~~L~~~~~~~~ly~G~~~~--~pv~r~~~~K~yvp~-~~~~g~~~~~Yp~y~~G~gYvlS~dla~~I~~ 280 (367)
++++......++..|.... .+..|.-.++.+--- ...+ +..++.+.+| .-++++++++.+..
T Consensus 110 ~l~~~~~~~~DvV~~~r~~~~~~~~r~~~s~~~~~l~~~~~---g~~~~d~~~g-fr~~~r~~~~~l~~ 174 (325)
T PRK10714 110 RLVAKADEGYDVVGTVRQNRQDSWFRKTASKMINRLIQRTT---GKAMGDYGCM-LRAYRRHIVDAMLH 174 (325)
T ss_pred HHHHHHHhhCCEEEEEEcCCCCcHHHHHHHHHHHHHHHHHc---CCCCCCCCcC-eEEEcHHHHHHHHH
Confidence 8888764333454444321 222222222221110 0111 2234444333 34899999999864
No 49
>PF03071 GNT-I: GNT-I family; InterPro: IPR004139 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GNT-I, GLCNAC-T I) 2.4.1.101 from EC transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide. This is an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus, and is probably distributed in all tissues. The catalytic domain is located at the C terminus []. These proteins are members of the glycosyl transferase family 13 (GH13 from CAZY); GO: 0003827 alpha-1,3-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity, 0006487 protein N-linked glycosylation, 0000139 Golgi membrane; PDB: 2APC_A 2AM4_A 1FO9_A 2AM3_A 1FOA_A 2AM5_A 1FO8_A.
Probab=65.04 E-value=70 Score=33.24 Aligned_cols=86 Identities=12% Similarity=0.211 Sum_probs=43.9
Q ss_pred HHHHHHHHhh----cCCccEEEEeCCceeecHHHHHHHHhhc---CCCCceEEEEeccCcccccCCCcccc----ccccc
Q 017688 183 TKIFFATAVA----LWDADFYVKVDDDVHVNIATLGATLARH---RSKPRVYIGCMKSGPVLAQKGVRYHE----PEYWK 251 (367)
Q Consensus 183 t~~~~~wa~~----~~~a~fvlKvDDDvfVn~~~L~~~L~~~---~~~~~ly~G~~~~~pv~r~~~~K~yv----p~~~~ 251 (367)
.-.-++|+.. ..+++.++-+.||.-|-++-+.-+.... ...+.+| |+..- .+.+...++ |...|
T Consensus 175 IA~HYk~aL~~vF~~~~~~~vIIlEDDL~isPDFf~Yf~~~~~ll~~D~sl~--ciSaw---NdnG~~~~~~~~~~~~ly 249 (434)
T PF03071_consen 175 IARHYKWALSQVFNKFKYSSVIILEDDLEISPDFFEYFSATLPLLENDPSLW--CISAW---NDNGKEHFVDDSRPSLLY 249 (434)
T ss_dssp HHHHHHHHHHHHHHTS--SEEEEEETTEEE-TTHHHHHHHHHHHHHH-TTEE--EEES-----TT-BGGGS-TT-TT-EE
T ss_pred HHHHHHHHHHHHHHhcCCceEEEEecCcccCccHHHHHHHHHHHHhcCCCeE--EEEcc---ccCCccccccCCCccceE
Confidence 3444555543 3578899999999999887665444332 2345666 43310 011111121 33333
Q ss_pred cCCCCCccCcCcccCcceecHHHHHHHHH
Q 017688 252 FGEEGNKYFRHATGQLYAISKDLASYISI 280 (367)
Q Consensus 252 ~g~~~~~Yp~y~~G~gYvlS~dla~~I~~ 280 (367)
..| |..|-|++|++++=..|..
T Consensus 250 Rsd-------ffpglGWml~r~~w~el~~ 271 (434)
T PF03071_consen 250 RSD-------FFPGLGWMLTRELWDELEP 271 (434)
T ss_dssp EES-------S---SSEEEEHHHHHHHGG
T ss_pred ecc-------cCCchHHHhhHHHHHhhcc
Confidence 221 3459999999999886654
No 50
>COG4092 Predicted glycosyltransferase involved in capsule biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=60.30 E-value=37 Score=33.18 Aligned_cols=161 Identities=13% Similarity=0.127 Sum_probs=94.4
Q ss_pred ccCCeEEEEEeccCCCCCchhHHHHHHHhhhCCCEEEeccc--ccCCchhHHHHHHHHHHhhcCCccEEEEeCCceeecH
Q 017688 133 EEKGIVMRFVIGHSATSGGILDRAIEAEDKKHGDFLRLEHV--EGYLELSAKTKIFFATAVALWDADFYVKVDDDVHVNI 210 (367)
Q Consensus 133 ~~~~v~~~FvlG~s~~~~~~~~~~L~~E~~~~~Dil~ldf~--Dsy~nLt~Kt~~~~~wa~~~~~a~fvlKvDDDvfVn~ 210 (367)
...++.++|+-|.+ ..++.|..=.....-++-+++. +.+..-+.--..+..|+++.++.++++..|-|+|...
T Consensus 35 s~~~~~vi~~~~~~-----~~d~~i~~~i~~~~~~~yl~~~s~~~F~s~~~c~n~ga~Ysh~~~~Sn~vlFlDvDc~~S~ 109 (346)
T COG4092 35 SSDITMVICLRAHE-----VMDRLIRSYIDPMPRVLYLDFGSPEPFASETICANNGADYSHEKCESNLVLFLDVDCFGSS 109 (346)
T ss_pred ccccEEEEEEecch-----hHHHHHHHHhccccceEEEecCCCccccchhhhhhccchhhhccccccEEEEEeccccccH
Confidence 35567788887765 3567777777777777888864 4555545556667888888779999999999999999
Q ss_pred HHHHHHHhhc-----CC---CCceE-EEEecc--CcccccCCC-ccc----cccccccCCCCCccCcCcccCcceecHHH
Q 017688 211 ATLGATLARH-----RS---KPRVY-IGCMKS--GPVLAQKGV-RYH----EPEYWKFGEEGNKYFRHATGQLYAISKDL 274 (367)
Q Consensus 211 ~~L~~~L~~~-----~~---~~~ly-~G~~~~--~pv~r~~~~-K~y----vp~~~~~g~~~~~Yp~y~~G~gYvlS~dl 274 (367)
++..+.|.-. +. .+.+| +-+++. +.+..+-.+ +|- ++.--.++ .+..|+-=..-+.+++.++.
T Consensus 110 dnF~k~l~~~~ikk~~tnI~a~~vlPV~~LNk~~~~v~f~~~d~f~d~~i~es~~~~~~-~~~~ff~~~~T~~~liN~~~ 188 (346)
T COG4092 110 DNFAKMLSIATIKKMRTNIDAPLVLPVYHLNKADTQVFFDVEDMFLDAMIFESPLAEFR-KEDNFFIAPYTNIFLINRRM 188 (346)
T ss_pred HHHHHHHHHHHHHHHHhccCcceeeeeeecchhhhhHHHHHHHHhhhhHhhhhHHHHhC-cccccccccccceEEEehhH
Confidence 9999988321 11 11111 111111 112111111 110 00000011 11222222234567888888
Q ss_pred HHHHHHhccccCCCCCchHHH-HHHH
Q 017688 275 ASYISINQHVLHKFANEDVSL-GSWF 299 (367)
Q Consensus 275 a~~I~~~~~~l~~~~~EDV~v-G~~l 299 (367)
-.+..-+......+.-||.-+ .+..
T Consensus 189 F~~tgGydE~F~GhG~EDfe~~~R~~ 214 (346)
T COG4092 189 FSLTGGYDERFRGHGSEDFEFLTRLG 214 (346)
T ss_pred HHHhcCCccccccCCchhHHHHHHHH
Confidence 777776667777788898865 4433
No 51
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=59.85 E-value=1.2e+02 Score=26.36 Aligned_cols=109 Identities=13% Similarity=0.104 Sum_probs=58.4
Q ss_pred HHHHHhhcCCccEEEEeCCceeecHHHHHHHHhhcC--CCCceEEEEecc---CcccccCCCccccccccccCCCCCccC
Q 017688 186 FFATAVALWDADFYVKVDDDVHVNIATLGATLARHR--SKPRVYIGCMKS---GPVLAQKGVRYHEPEYWKFGEEGNKYF 260 (367)
Q Consensus 186 ~~~wa~~~~~a~fvlKvDDDvfVn~~~L~~~L~~~~--~~~~ly~G~~~~---~pv~r~~~~K~yvp~~~~~g~~~~~Yp 260 (367)
++.++.+....+|++..|+|..+..+.|...++... +...+..|.... ..... ..++.+. |.. ...+.
T Consensus 74 a~n~g~~~a~~d~i~~ld~D~~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~---~~~~~~~-~~~---~~~~~ 146 (202)
T cd04184 74 ATNSALELATGEFVALLDHDDELAPHALYEVVKALNEHPDADLIYSDEDKIDEGGKRS---EPFFKPD-WSP---DLLLS 146 (202)
T ss_pred HHHHHHHhhcCCEEEEECCCCcCChHHHHHHHHHHHhCCCCCEEEccHHhccCCCCEe---ccccCCC-CCH---HHhhh
Confidence 345555555789999999999999998888887652 222333332211 00000 0111111 110 00111
Q ss_pred cCcccCcceecHHHHHHHHHhccccCCCCCchHHHHHHHhcCC
Q 017688 261 RHATGQLYAISKDLASYISINQHVLHKFANEDVSLGSWFIGLD 303 (367)
Q Consensus 261 ~y~~G~gYvlS~dla~~I~~~~~~l~~~~~EDV~vG~~l~~l~ 303 (367)
.-+.|++-+++++++..+-.-... ....||.-++.-+...|
T Consensus 147 ~~~~~~~~~~~r~~~~~iggf~~~--~~~~eD~~l~~rl~~~g 187 (202)
T cd04184 147 QNYIGHLLVYRRSLVRQVGGFREG--FEGAQDYDLVLRVSEHT 187 (202)
T ss_pred cCCccceEeEEHHHHHHhCCCCcC--cccchhHHHHHHHHhcc
Confidence 123455567888888776432111 22469998887775444
No 52
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=59.80 E-value=1.2e+02 Score=26.68 Aligned_cols=90 Identities=11% Similarity=0.010 Sum_probs=50.0
Q ss_pred HHhhcCCccEEEEeCCceeecHHHHHHHHhh-cCCCCceEEEEec-cCcccccCCCcc--cccc-ccccCCC-CCccCcC
Q 017688 189 TAVALWDADFYVKVDDDVHVNIATLGATLAR-HRSKPRVYIGCMK-SGPVLAQKGVRY--HEPE-YWKFGEE-GNKYFRH 262 (367)
Q Consensus 189 wa~~~~~a~fvlKvDDDvfVn~~~L~~~L~~-~~~~~~ly~G~~~-~~pv~r~~~~K~--yvp~-~~~~g~~-~~~Yp~y 262 (367)
...+....+|++.+|+|..+.++.|..++.. ..+...+..|... ..... .....+ +.+. ...+.-. ...-...
T Consensus 72 ~g~~~a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (224)
T cd06442 72 EGFKAARGDVIVVMDADLSHPPEYIPELLEAQLEGGADLVIGSRYVEGGGV-EGWGLKRKLISRGANLLARLLLGRKVSD 150 (224)
T ss_pred HHHHHcCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCEEEEeeeecCCcc-CCCcHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 3333345699999999999999988888886 3445566666532 11110 000000 0000 0000000 0112335
Q ss_pred cccCcceecHHHHHHHH
Q 017688 263 ATGQLYAISKDLASYIS 279 (367)
Q Consensus 263 ~~G~gYvlS~dla~~I~ 279 (367)
++|++.++++++++.+.
T Consensus 151 ~~~~~~~~~r~~~~~ig 167 (224)
T cd06442 151 PTSGFRAYRREVLEKLI 167 (224)
T ss_pred CCCccchhhHHHHHHHh
Confidence 77888899999999987
No 53
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=59.59 E-value=58 Score=28.80 Aligned_cols=105 Identities=15% Similarity=0.057 Sum_probs=57.6
Q ss_pred HHHhhcCCccEEEEeCCceeecHHHHHHHHhhcCCCCceEEEEec----c-CcccccCCCccccccccccCCCCCccCcC
Q 017688 188 ATAVALWDADFYVKVDDDVHVNIATLGATLARHRSKPRVYIGCMK----S-GPVLAQKGVRYHEPEYWKFGEEGNKYFRH 262 (367)
Q Consensus 188 ~wa~~~~~a~fvlKvDDDvfVn~~~L~~~L~~~~~~~~ly~G~~~----~-~pv~r~~~~K~yvp~~~~~g~~~~~Yp~y 262 (367)
.-+......+|++.+|+|..+..+.|...+....... ..+|... . +...+....++..... ....+
T Consensus 65 n~g~~~a~~~~i~~~D~D~~~~~~~l~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~- 135 (221)
T cd02522 65 NAGAAAARGDWLLFLHADTRLPPDWDAAIIETLRADG-AVAGAFRLRFDDPGPRLRLLELGANLRSR-------LFGLP- 135 (221)
T ss_pred HHHHHhccCCEEEEEcCCCCCChhHHHHHHHHhhcCC-cEEEEEEeeecCCccchhhhhhcccceec-------ccCCC-
Confidence 3344444689999999999999888888766554333 3334421 1 1110000001111100 01111
Q ss_pred cccCcceecHHHHHHHHHhccccCCCCCchHHHHHHHhcCCC
Q 017688 263 ATGQLYAISKDLASYISINQHVLHKFANEDVSLGSWFIGLDA 304 (367)
Q Consensus 263 ~~G~gYvlS~dla~~I~~~~~~l~~~~~EDV~vG~~l~~l~v 304 (367)
.++.+.++++++...+-.-.... ..||.-++.=+...|-
T Consensus 136 ~~~~~~~~r~~~~~~~G~fd~~~---~~ED~d~~~r~~~~G~ 174 (221)
T cd02522 136 YGDQGLFIRRELFEELGGFPELP---LMEDVELVRRLRRRGR 174 (221)
T ss_pred cCCceEEEEHHHHHHhCCCCccc---cccHHHHHHHHHhCCC
Confidence 24567889999887774332222 6899988877765543
No 54
>cd04191 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elongation of beta-1,2 polyglucose chains of glucan. Periplasmic Glucan Biosynthesis protein ModH is a glucosyltransferase that catalyzes the elongation of beta-1,2 polyglucose chains of glucan, requiring a beta-glucoside as a primer and UDP-glucose as a substrate. Glucans are composed of 5 to 10 units of glucose forming a highly branched structure, where beta-1,2-linked glucose constitutes a linear backbone to which branches are attached by beta-1,6 linkages. In Escherichia coli, glucans are located in the periplasmic space, functioning as regulator of osmolarity. It is synthesized at a maximum when cells are grown in a medium with low osmolarity. It has been shown to span the cytoplasmic membrane.
Probab=57.12 E-value=1.8e+02 Score=27.59 Aligned_cols=127 Identities=15% Similarity=0.086 Sum_probs=70.5
Q ss_pred EecccccCCchhHHHHHHHHHHhhc-CCccEEEEeCCceeecHHHHHHHHhhcCCCCceEEEEeccCcccccCCC---cc
Q 017688 169 RLEHVEGYLELSAKTKIFFATAVAL-WDADFYVKVDDDVHVNIATLGATLARHRSKPRVYIGCMKSGPVLAQKGV---RY 244 (367)
Q Consensus 169 ~ldf~Dsy~nLt~Kt~~~~~wa~~~-~~a~fvlKvDDDvfVn~~~L~~~L~~~~~~~~ly~G~~~~~pv~r~~~~---K~ 244 (367)
.+-+...-.|.-.|+-..-...... .+.+|++-.|.|+.+.++.|.+.+......+. +|-+.......+..+ ++
T Consensus 68 ~v~~~~r~~~~g~Kag~l~~~~~~~~~~~~~i~~~DaD~~~~p~~l~~~v~~~~~~~~--vg~vq~~~~~~n~~~~~~~~ 145 (254)
T cd04191 68 RIYYRRRRENTGRKAGNIADFCRRWGSRYDYMVVLDADSLMSGDTIVRLVRRMEANPR--AGIIQTAPKLIGAETLFARL 145 (254)
T ss_pred cEEEEEcCCCCCccHHHHHHHHHHhCCCCCEEEEEeCCCCCCHHHHHHHHHHHHhCCC--EEEEeCCceeECCCCHHHHH
Confidence 3333333444445555544443332 57899999999999999999998877643343 233321110011111 11
Q ss_pred -------ccc------cccccCCCCCccCcCcccCcceecHHHHHHHHHhcc-----cc-CCCCCchHHHHHHHhcCC
Q 017688 245 -------HEP------EYWKFGEEGNKYFRHATGQLYAISKDLASYISINQH-----VL-HKFANEDVSLGSWFIGLD 303 (367)
Q Consensus 245 -------yvp------~~~~~g~~~~~Yp~y~~G~gYvlS~dla~~I~~~~~-----~l-~~~~~EDV~vG~~l~~l~ 303 (367)
|.| ..|. ..-.+|.|...++.++++..+..-.. -+ ...-.||..+|..+...|
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~------~~~~~~~G~~~~~Rr~al~~~~~~~~i~g~g~~~~~~l~eD~~l~~~~~~~G 217 (254)
T cd04191 146 QQFANRLYGPVFGRGLAAWQ------GGEGNYWGHNAIIRVAAFMEHCALPVLPGRPPFGGHILSHDFVEAALMRRAG 217 (254)
T ss_pred HHHHHHHHHHHHHHHHHHhc------CCccCccceEEEEEHHHHHHhcCCccccCCCCCCCCeecHHHHHHHHHHHcC
Confidence 000 0011 11124679999999998877643211 11 223579999999986544
No 55
>PHA01631 hypothetical protein
Probab=55.96 E-value=31 Score=31.17 Aligned_cols=92 Identities=15% Similarity=0.187 Sum_probs=53.1
Q ss_pred CCCEEEecccccCCchhHHHHHHHHHHhh---cCCccEEEEeCCceeecHHHHHHHHhhcCCCCceEEEEeccCcccccC
Q 017688 164 HGDFLRLEHVEGYLELSAKTKIFFATAVA---LWDADFYVKVDDDVHVNIATLGATLARHRSKPRVYIGCMKSGPVLAQK 240 (367)
Q Consensus 164 ~~Dil~ldf~Dsy~nLt~Kt~~~~~wa~~---~~~a~fvlKvDDDvfVn~~~L~~~L~~~~~~~~ly~G~~~~~pv~r~~ 240 (367)
+.+|+...--..++ .+....++..+.+ .-+-+.++.+|.|++|+.-. .. .++..++.=|.. .+
T Consensus 39 ~~~Ii~~~t~~e~R--r~RIAk~Ll~Iln~~s~i~DDi~~iIDSDV~ipn~~--~~----~~~~~v~t~CiP---A~--- 104 (176)
T PHA01631 39 QEKIIWIMTNTEIR--WLRIAKQLLTIVNFAKNIEDDIIAIIDSDLIIPNLR--EI----IPNERVFTPCYW---LY--- 104 (176)
T ss_pred CCceEEecccchhH--HHHHHHHHHHHHHhhccCCccEEEEeccceEecCcc--cc----ccCCCccceeee---ee---
Confidence 44555554222222 2333344445543 34667888999999998532 11 123344444432 11
Q ss_pred CCccccccccccCCCCCccCcCcccCcceecHHHHHHHHHh
Q 017688 241 GVRYHEPEYWKFGEEGNKYFRHATGQLYAISKDLASYISIN 281 (367)
Q Consensus 241 ~~K~yvp~~~~~g~~~~~Yp~y~~G~gYvlS~dla~~I~~~ 281 (367)
.| +.+.+-+||.|.-|++.+..+..+...
T Consensus 105 -~k-----------p~~~v~~FC~sTNf~~pr~~l~~l~~v 133 (176)
T PHA01631 105 -YD-----------WANEIRPFCSGTNYIFRKSLLPYLEYT 133 (176)
T ss_pred -ec-----------CCCcEEEEEccccEEeeHHHhHHHHHH
Confidence 01 223566799999999999999998764
No 56
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=55.50 E-value=53 Score=30.87 Aligned_cols=123 Identities=10% Similarity=-0.023 Sum_probs=60.7
Q ss_pred HHHHHhhcCCccEEEEeCCceeecHHHHHHHHhhcCCCC-c-eEEEEec-c-CcccccCC---CccccccccccCC-CCC
Q 017688 186 FFATAVALWDADFYVKVDDDVHVNIATLGATLARHRSKP-R-VYIGCMK-S-GPVLAQKG---VRYHEPEYWKFGE-EGN 257 (367)
Q Consensus 186 ~~~wa~~~~~a~fvlKvDDDvfVn~~~L~~~L~~~~~~~-~-ly~G~~~-~-~pv~r~~~---~K~yvp~~~~~g~-~~~ 257 (367)
++++|.+ .+++|++..|||+.+..+.|..++......+ . ..+|... . ......+. ..+..+. ..... ...
T Consensus 65 Gi~~a~~-~~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 142 (281)
T TIGR01556 65 GLDASFR-RGVQGVLLLDQDSRPGNAFLAAQWKLLSAENGQACALGPRFFDRGTSRRLPAIHLDGLLLRQ-ISLDGLTTP 142 (281)
T ss_pred HHHHHHH-CCCCEEEEECCCCCCCHHHHHHHHHHHHhcCCceEEECCeEEcCCCcccCCceeecccceee-ecccccCCc
Confidence 4566654 3789999999999999888887776543222 2 2233211 1 00000000 0000010 00000 001
Q ss_pred ccCcCcccCcceecHHHHHHHHHhccccCCCCCchHHHHHHHh--cCCCeeeCCCC
Q 017688 258 KYFRHATGQLYAISKDLASYISINQHVLHKFANEDVSLGSWFI--GLDAEHIDDRR 311 (367)
Q Consensus 258 ~Yp~y~~G~gYvlS~dla~~I~~~~~~l~~~~~EDV~vG~~l~--~l~v~~~~~~~ 311 (367)
.-..++.++|.++++++++.+---...+ .+..||+-+..=+. |..+-.+++..
T Consensus 143 ~~~~~~~~sg~li~~~~~~~iG~fde~~-fi~~~D~e~~~R~~~~G~~i~~~~~~~ 197 (281)
T TIGR01556 143 QKTSFLISSGCLITREVYQRLGMMDEEL-FIDHVDTEWSLRAQNYGIPLYIDPDIV 197 (281)
T ss_pred eeccEEEcCcceeeHHHHHHhCCccHhh-cccchHHHHHHHHHHCCCEEEEeCCEE
Confidence 1123455667789999998874322222 23468887755554 33333344333
No 57
>TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming). Cellulose synthase catalyzes the beta-1,4 polymerization of glucose residues in the formation of cellulose. In bacteria, the substrate is UDP-glucose. The synthase consists of two subunits (or domains in the frequent cases where it is encoded as a single polypeptide), the catalytic domain modelled here and the regulatory domain (pfam03170). The regulatory domain binds the allosteric activator cyclic di-GMP. The protein is membrane-associated and probably assembles into multimers such that the individual cellulose strands can self-assemble into multi-strand fibrils.
Probab=54.64 E-value=1.3e+02 Score=33.11 Aligned_cols=133 Identities=15% Similarity=0.143 Sum_probs=72.5
Q ss_pred chhHHHHHHHHHHhhcCCccEEEEeCCceeecHHHHHHHHhhcCCCCce-EEEEec----cCcccccCCCcccccc-c-c
Q 017688 178 ELSAKTKIFFATAVALWDADFYVKVDDDVHVNIATLGATLARHRSKPRV-YIGCMK----SGPVLAQKGVRYHEPE-Y-W 250 (367)
Q Consensus 178 nLt~Kt~~~~~wa~~~~~a~fvlKvDDDvfVn~~~L~~~L~~~~~~~~l-y~G~~~----~~pv~r~~~~K~yvp~-~-~ 250 (367)
|...|.- .+..+.+..+.+|++..|.|+.+..+.|.+.+......+++ +++... ..+..+.-......|. . .
T Consensus 212 n~~~KAg-nLN~al~~a~gd~Il~lDAD~v~~pd~L~~~v~~f~~dp~v~~Vqtp~~f~~p~~~~~nl~~~~~~~~e~~~ 290 (713)
T TIGR03030 212 NVHAKAG-NINNALKHTDGELILIFDADHVPTRDFLQRTVGWFVEDPKLFLVQTPHFFVSPDPIERNLGTFRRMPNENEL 290 (713)
T ss_pred CCCCChH-HHHHHHHhcCCCEEEEECCCCCcChhHHHHHHHHHHhCCCEEEEeCCeeccCCCHHhhhhHHHHHhhhHHHH
Confidence 4444543 35666666788999999999999999888887765333443 121110 0111111000000110 0 0
Q ss_pred ccCC--CCC--ccCcCcccCcceecHHHHHHHHHhccccCCCCCchHHHHHHHhcC--CCeeeCCCCccc
Q 017688 251 KFGE--EGN--KYFRHATGQLYAISKDLASYISINQHVLHKFANEDVSLGSWFIGL--DAEHIDDRRLCC 314 (367)
Q Consensus 251 ~~g~--~~~--~Yp~y~~G~gYvlS~dla~~I~~~~~~l~~~~~EDV~vG~~l~~l--~v~~~~~~~f~~ 314 (367)
+++. ++. .-..++.|++.++.+++...+---.. ..-.||..+|.-+... .+...++.....
T Consensus 291 f~~~i~~g~~~~~~~~~~Gs~~~iRR~al~~iGGf~~---~~vtED~~l~~rL~~~G~~~~y~~~~~~~g 357 (713)
T TIGR03030 291 FYGLIQDGNDFWNAAFFCGSAAVLRREALDEIGGIAG---ETVTEDAETALKLHRRGWNSAYLDRPLIAG 357 (713)
T ss_pred HHHHHHHHHhhhCCeeecCceeEEEHHHHHHcCCCCC---CCcCcHHHHHHHHHHcCCeEEEeccccccc
Confidence 0000 000 01235678999999999987742111 1237999999998654 445566554433
No 58
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=53.56 E-value=1.6e+02 Score=26.02 Aligned_cols=88 Identities=15% Similarity=0.076 Sum_probs=52.0
Q ss_pred CeEEEEEeccCCCCCchhHHHHHHHhhhCCCEEE-ecccccCCchhHHHHHHHHHHhhcCCccEEEEeCCceeecHHHHH
Q 017688 136 GIVMRFVIGHSATSGGILDRAIEAEDKKHGDFLR-LEHVEGYLELSAKTKIFFATAVALWDADFYVKVDDDVHVNIATLG 214 (367)
Q Consensus 136 ~v~~~FvlG~s~~~~~~~~~~L~~E~~~~~Dil~-ldf~Dsy~nLt~Kt~~~~~wa~~~~~a~fvlKvDDDvfVn~~~L~ 214 (367)
.+.++.|-+.|.+ .....+....++++..++ +.... |.- +. .++..+.+....+|++.+|+|..+.++.|.
T Consensus 30 ~~eiivvdd~S~D---~t~~~~~~~~~~~~~~i~~i~~~~---n~G-~~-~a~~~g~~~a~gd~i~~ld~D~~~~~~~l~ 101 (211)
T cd04188 30 SYEIIVVDDGSKD---GTAEVARKLARKNPALIRVLTLPK---NRG-KG-GAVRAGMLAARGDYILFADADLATPFEELE 101 (211)
T ss_pred CEEEEEEeCCCCC---chHHHHHHHHHhCCCcEEEEEccc---CCC-cH-HHHHHHHHHhcCCEEEEEeCCCCCCHHHHH
Confidence 4567777666542 233445555556665422 22222 221 11 233334444466999999999999999999
Q ss_pred HHHhh-cCCCCceEEEEe
Q 017688 215 ATLAR-HRSKPRVYIGCM 231 (367)
Q Consensus 215 ~~L~~-~~~~~~ly~G~~ 231 (367)
.++.. ......+.+|..
T Consensus 102 ~l~~~~~~~~~~~v~g~r 119 (211)
T cd04188 102 KLEEALKTSGYDIAIGSR 119 (211)
T ss_pred HHHHHHhccCCcEEEEEe
Confidence 88886 334456677764
No 59
>cd04190 Chitin_synth_C C-terminal domain of Chitin Synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin. Chitin synthase, also called UDP-N-acetyl-D-glucosamine:chitin 4-beta-N-acetylglucosaminyltransferase, catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of GlcNAc residues formed by covalent beta-1,4 linkages. Chitin is an important component of the cell wall of fungi and bacteria and it is synthesized on the cytoplasmic surface of the cell membrane by membrane bound chitin synthases. Studies with fungi have revealed that most of them contain more than one chitin synthase gene. At least five subclasses of chitin synthases have been identified.
Probab=51.97 E-value=19 Score=33.46 Aligned_cols=110 Identities=15% Similarity=0.097 Sum_probs=60.0
Q ss_pred CCccEEEEeCCceeecHHHHHHHHhhcCCCCce--EEEEecc-Cc---cc-ccCCCccccccc-cccCCCCCccCcCccc
Q 017688 194 WDADFYVKVDDDVHVNIATLGATLARHRSKPRV--YIGCMKS-GP---VL-AQKGVRYHEPEY-WKFGEEGNKYFRHATG 265 (367)
Q Consensus 194 ~~a~fvlKvDDDvfVn~~~L~~~L~~~~~~~~l--y~G~~~~-~p---v~-r~~~~K~yvp~~-~~~g~~~~~Yp~y~~G 265 (367)
.+.+|++.+|.|+.+..+.|..++......+++ ..|.+.. ++ .+ +-..--|..... .......-.+...+.|
T Consensus 72 a~~e~i~~~DaD~~~~~~~l~~l~~~~~~~p~vg~v~g~~~~~~~~~~~~~~~q~~ey~~~~~~~~~~~s~~g~~~~~~G 151 (244)
T cd04190 72 DDPEFILLVDADTKFDPDSIVQLYKAMDKDPEIGGVCGEIHPMGKKQGPLVMYQVFEYAISHWLDKAFESVFGFVTCLPG 151 (244)
T ss_pred CCCCEEEEECCCCcCCHhHHHHHHHHHHhCCCEEEEEeeeEEcCCcchhHHHhHheehhhhhhhcccHHHcCCceEECCC
Confidence 588999999999999999988888766434443 2333321 10 00 000000000000 0000011234566789
Q ss_pred CcceecHHHHHHHHHhccc----------c-------CCCCCchHHHHHHHhcCC
Q 017688 266 QLYAISKDLASYISINQHV----------L-------HKFANEDVSLGSWFIGLD 303 (367)
Q Consensus 266 ~gYvlS~dla~~I~~~~~~----------l-------~~~~~EDV~vG~~l~~l~ 303 (367)
+++++.+++.+.+...... + .....||..++..+...|
T Consensus 152 ~~~~~R~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ED~~l~~~l~~~G 206 (244)
T cd04190 152 CFSMYRIEALKGDNGGKGPLLDYAYLTNTVDSLHKKNNLDLGEDRILCTLLLKAG 206 (244)
T ss_pred ceEEEEehhhcCCccccccchhhccccCcccchHHHHHHhHhcccceeHHHhccC
Confidence 9999999988765322110 0 112469999988885443
No 60
>KOG2547 consensus Ceramide glucosyltransferase [Lipid transport and metabolism; Cell wall/membrane/envelope biogenesis]
Probab=50.80 E-value=16 Score=37.12 Aligned_cols=99 Identities=13% Similarity=0.081 Sum_probs=51.8
Q ss_pred CeEEEEEeccCCCCCchhHHHHHHHhhhCCCEEEecccccC-CchhHHHHHHHHHHhhcCCccEEEEeCCceeecHHHHH
Q 017688 136 GIVMRFVIGHSATSGGILDRAIEAEDKKHGDFLRLEHVEGY-LELSAKTKIFFATAVALWDADFYVKVDDDVHVNIATLG 214 (367)
Q Consensus 136 ~v~~~FvlG~s~~~~~~~~~~L~~E~~~~~Dil~ldf~Dsy-~nLt~Kt~~~~~wa~~~~~a~fvlKvDDDvfVn~~~L~ 214 (367)
...+.|++-.+.++ .-..++.=.++|..+=--=|..+- -.+..|.-.++- +++.-..+|++..|||+|+.++.+.
T Consensus 114 ~~ElLfcv~s~eDp---Ai~vv~~Ll~kyp~VdAklf~gG~~vg~npKInN~mp-gy~~a~ydlvlisDsgI~m~pdtil 189 (431)
T KOG2547|consen 114 KYELLFCVESSEDP---AIEVVERLLKKYPNVDAKLFFGGEKVGLNPKINNMMP-GYRAAKYDLVLISDSGIFMKPDTIL 189 (431)
T ss_pred ceEEEEEEccCCCc---HHHHHHHHHhhCCCcceEEEEcccccccChhhhccCH-HHHHhcCCEEEEecCCeeecCchHH
Confidence 44578888766532 223444445666632111122221 122334332221 1122256699999999999999999
Q ss_pred HHHhhcCCCCceEEEEeccCcccccC
Q 017688 215 ATLARHRSKPRVYIGCMKSGPVLAQK 240 (367)
Q Consensus 215 ~~L~~~~~~~~ly~G~~~~~pv~r~~ 240 (367)
.+-..-...+ =+|-+.++|-..+.
T Consensus 190 dm~t~M~she--kmalvtq~py~~dr 213 (431)
T KOG2547|consen 190 DMATTMMSHE--KMALVTQTPYCKDR 213 (431)
T ss_pred HHHHhhhccc--ceeeecCCceeecc
Confidence 8876543212 24555555544333
No 61
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=47.14 E-value=2.3e+02 Score=25.91 Aligned_cols=157 Identities=13% Similarity=0.079 Sum_probs=79.5
Q ss_pred CeEEEEEeccCCCCCchhHHHHHHHhhhCCC-EEEecccccCCchhHHHHHHHHHHhhcCCccEEEEeCCceeecHHHHH
Q 017688 136 GIVMRFVIGHSATSGGILDRAIEAEDKKHGD-FLRLEHVEGYLELSAKTKIFFATAVALWDADFYVKVDDDVHVNIATLG 214 (367)
Q Consensus 136 ~v~~~FvlG~s~~~~~~~~~~L~~E~~~~~D-il~ldf~Dsy~nLt~Kt~~~~~wa~~~~~a~fvlKvDDDvfVn~~~L~ 214 (367)
.+.+++|-..|.+ ...+.+.+-.++|++ .+.+-.. -.|... -.++..+....+.+|++.+|+|..++++.|.
T Consensus 40 ~~eiivvDdgS~D---~t~~i~~~~~~~~~~~~v~~~~~--~~n~G~--~~a~n~g~~~a~g~~i~~lD~D~~~~~~~l~ 112 (243)
T PLN02726 40 DFEIIVVDDGSPD---GTQDVVKQLQKVYGEDRILLRPR--PGKLGL--GTAYIHGLKHASGDFVVIMDADLSHHPKYLP 112 (243)
T ss_pred CeEEEEEeCCCCC---CHHHHHHHHHHhcCCCcEEEEec--CCCCCH--HHHHHHHHHHcCCCEEEEEcCCCCCCHHHHH
Confidence 5667777765542 233334443445553 2222111 112221 1234444444578999999999999999888
Q ss_pred HHHhhcC-CCCceEEEEecc--CcccccCCCcc---cccc------ccccCCCCCccCcCcccCcceecHHHHHHHHHhc
Q 017688 215 ATLARHR-SKPRVYIGCMKS--GPVLAQKGVRY---HEPE------YWKFGEEGNKYFRHATGQLYAISKDLASYISINQ 282 (367)
Q Consensus 215 ~~L~~~~-~~~~ly~G~~~~--~pv~r~~~~K~---yvp~------~~~~g~~~~~Yp~y~~G~gYvlS~dla~~I~~~~ 282 (367)
.++.... ....+.+|.... +.. .+..| ..+. .+.++ . .-....|++.+++++++..+....
T Consensus 113 ~l~~~~~~~~~~~v~g~r~~~~~~~---~~~~~~r~~~~~~~~~~~~~~~~---~-~~~d~~g~~~~~rr~~~~~i~~~~ 185 (243)
T PLN02726 113 SFIKKQRETGADIVTGTRYVKGGGV---HGWDLRRKLTSRGANVLAQTLLW---P-GVSDLTGSFRLYKRSALEDLVSSV 185 (243)
T ss_pred HHHHHHHhcCCcEEEEccccCCCCc---CCccHHHHHHHHHHHHHHHHHhC---C-CCCcCCCcccceeHHHHHHHHhhc
Confidence 8887653 234566665321 100 00001 1110 01111 1 112367888899999999996532
Q ss_pred cccCCCCCchHHHHHHH--hcCCCeeeC
Q 017688 283 HVLHKFANEDVSLGSWF--IGLDAEHID 308 (367)
Q Consensus 283 ~~l~~~~~EDV~vG~~l--~~l~v~~~~ 308 (367)
.. ..| ..|+-+..-+ .|..+..++
T Consensus 186 ~~-~~~-~~~~el~~~~~~~g~~i~~vp 211 (243)
T PLN02726 186 VS-KGY-VFQMEIIVRASRKGYRIEEVP 211 (243)
T ss_pred cC-CCc-EEehHHHHHHHHcCCcEEEeC
Confidence 22 122 2345554444 355555543
No 62
>PLN03181 glycosyltransferase; Provisional
Probab=42.17 E-value=1.5e+02 Score=30.68 Aligned_cols=92 Identities=23% Similarity=0.245 Sum_probs=55.4
Q ss_pred HHHHHHHhhcCCcccccccccCCeEEEEEeccCCC----C-Cc-hhHHHHHH---HhhhCC-CEEEec-ccc-cCCchhH
Q 017688 114 RDSVRATWMPQGDKRKKLEEEKGIVMRFVIGHSAT----S-GG-ILDRAIEA---EDKKHG-DFLRLE-HVE-GYLELSA 181 (367)
Q Consensus 114 R~aIR~TW~~~~~~l~~l~~~~~v~~~FvlG~s~~----~-~~-~~~~~L~~---E~~~~~-Dil~ld-f~D-sy~nLt~ 181 (367)
=+.-|+.|.+.... ...+.+-+|+.|.|..+. . ++ -+.+.+++ =+++|| +++..+ ..+ .+..-..
T Consensus 108 wD~kR~~Wl~~~p~---~~~~~~prVViVT~Sdp~~C~~~~gD~~LlriikNR~dYArrHGY~lf~~~a~Ld~~~p~~Wa 184 (453)
T PLN03181 108 WDEKRAEWLKLHPS---FAPGAEERVVMVTGSQPTPCKNPIGDHLLLRFFKNKVDYCRIHGYDIFYNNALLHPKMNSYWA 184 (453)
T ss_pred HHHHHHHHHHhCCC---CCCCCCCCEEEEECCCCCCCCCcccHHHHHHHHHHHHHHHHHhCCcEEEeccccCccCchhhh
Confidence 45566788875321 112334456677776522 1 22 23333332 367777 444333 233 5555677
Q ss_pred HHHHHHHHHhhcCCccEEEEeCCceee
Q 017688 182 KTKIFFATAVALWDADFYVKVDDDVHV 208 (367)
Q Consensus 182 Kt~~~~~wa~~~~~a~fvlKvDDDvfV 208 (367)
|...+-.-+.++|+++||.-+|.|+++
T Consensus 185 KipalRaAM~a~PeAEWfWWLDsDALI 211 (453)
T PLN03181 185 KLPVVRAAMLAHPEAEWIWWVDSDAVF 211 (453)
T ss_pred HHHHHHHHHHHCCCceEEEEecCCcee
Confidence 777777777779999999999999887
No 63
>PF04666 Glyco_transf_54: N-Acetylglucosaminyltransferase-IV (GnT-IV) conserved region; InterPro: IPR006759 The complex-type of oligosaccharides are synthesised through elongation by glycosyltransferases after trimming of the precursor oligosaccharides transferred to proteins in the endoplasmic reticulum. N-Acetylglucosaminyltransferases (GnTs) take part in the formation of branches in the biosynthesis of complex-type sugar chains. In vertebrates, six GnTs, designated as GnT-I to -VI, which catalyse the transfer of GlcNAc to the core mannose residues of Asn-linked sugar chains, have been identified. GnT-IV (2.4.1.145 from EC) catalyzes the transfer of GlcNAc from UDP-GlcNAc to the GlcNAc1-2Man1-3 arm of core oligosaccharide [Gn2(22)core oligosaccharide] and forms a GlcNAc1-4(GlcNAc1-2)Man1-3 structure on the core oligosaccharide (Gn3(2,4,2)core oligosaccharide). In some members the conserved region occupies all but the very N-terminal, where there is a signal sequence on all members. For other members the conserved region does not occupy the entire protein but is still to the N-terminal end of the protein [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0016020 membrane
Probab=32.76 E-value=1.9e+02 Score=28.43 Aligned_cols=120 Identities=16% Similarity=0.172 Sum_probs=56.7
Q ss_pred CCceeEEEEEECCCCCHHHHHHHHHHhhcCCcccccccccCCeEEEEEeccCCCC-CchhHHHHHHHhhh---CCCEEEe
Q 017688 95 KRKYLMVVGINSAFSSRKRRDSVRATWMPQGDKRKKLEEEKGIVMRFVIGHSATS-GGILDRAIEAEDKK---HGDFLRL 170 (367)
Q Consensus 95 ~~~~~llI~V~S~p~~~~rR~aIR~TW~~~~~~l~~l~~~~~v~~~FvlG~s~~~-~~~~~~~L~~E~~~---~~Dil~l 170 (367)
+.++.|+|||.|-... +-.-+..|=++--..+..- +...+.++-+++.+... .......|..+-.. -|-+..+
T Consensus 49 ~~~~~L~IGIpTV~R~--~~sYL~~TL~SLl~~ls~~-Er~~i~IvVllAd~Dp~~~~~~~~~i~~~f~~~i~sG~l~VI 125 (297)
T PF04666_consen 49 RTGKKLCIGIPTVKRE--KESYLLDTLASLLDGLSPE-ERKDIVIVVLLADTDPDYHPSVAQNISTRFADHIESGLLEVI 125 (297)
T ss_pred CCCCeEEEEecccccC--CCchHHHHHHHHHHhCCHH-HhcCeEEEEEecCCChhhhHHHHHHHHHHhHHHHHhCceEEE
Confidence 3445599999997542 3455666666643322221 23455555555554321 11222223221111 1222222
Q ss_pred ccccc-CCc--------------hhHHHHHHHHHHh--h-c-CCccEEEEeCCceeecHHHHHHHH
Q 017688 171 EHVEG-YLE--------------LSAKTKIFFATAV--A-L-WDADFYVKVDDDVHVNIATLGATL 217 (367)
Q Consensus 171 df~Ds-y~n--------------Lt~Kt~~~~~wa~--~-~-~~a~fvlKvDDDvfVn~~~L~~~L 217 (367)
.-..+ |-. ....+..-+.|+. . | ..++||+-..|||.....-+..+.
T Consensus 126 ~~p~~~Yp~l~~l~~~~~d~~~rv~wrsKq~lDya~Lm~y~~~~~~YyL~LEDDVia~~~f~~~i~ 191 (297)
T PF04666_consen 126 SPPPSYYPDLDNLKRNFGDSEERVRWRSKQNLDYAFLMNYCQNLGDYYLQLEDDVIAAPGFLSRIK 191 (297)
T ss_pred ecccccCCChhhhhhcccChhhhhhHHHhhcccHHHHHHHHHhcCCeEEEecCCeEechhHHHHHH
Confidence 22222 211 1122232333332 2 3 468899999999999876444443
No 64
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=30.87 E-value=2.6e+02 Score=21.86 Aligned_cols=34 Identities=12% Similarity=0.023 Sum_probs=25.5
Q ss_pred HHHHHhhcCCccEEEEeCCceeecHHHHHHHHhh
Q 017688 186 FFATAVALWDADFYVKVDDDVHVNIATLGATLAR 219 (367)
Q Consensus 186 ~~~wa~~~~~a~fvlKvDDDvfVn~~~L~~~L~~ 219 (367)
.+..+....+.+|++-+|+|..+..+.+...+..
T Consensus 68 ~~~~~~~~~~~d~v~~~d~D~~~~~~~~~~~~~~ 101 (156)
T cd00761 68 ARNAGLKAARGEYILFLDADDLLLPDWLERLVAE 101 (156)
T ss_pred HHHHHHHHhcCCEEEEECCCCccCccHHHHHHHH
Confidence 3444444448999999999999999888886443
No 65
>PRK05454 glucosyltransferase MdoH; Provisional
Probab=29.88 E-value=4.9e+02 Score=28.74 Aligned_cols=201 Identities=14% Similarity=0.073 Sum_probs=101.0
Q ss_pred CCceeEEEEEECCCCCHHH-HHHHHHHhhcCCcccccccccCCeEEEEEeccCCCCCchh--HHHHHHHhhhCCCEEEec
Q 017688 95 KRKYLMVVGINSAFSSRKR-RDSVRATWMPQGDKRKKLEEEKGIVMRFVIGHSATSGGIL--DRAIEAEDKKHGDFLRLE 171 (367)
Q Consensus 95 ~~~~~llI~V~S~p~~~~r-R~aIR~TW~~~~~~l~~l~~~~~v~~~FvlG~s~~~~~~~--~~~L~~E~~~~~Dil~ld 171 (367)
...+.+.|+|.+.-...++ +..|+.+..+-.. ......+.+ |++..+.+++-.. ..++.+=.++|++-..+-
T Consensus 121 ~~~~~VaVliP~yNEd~~~v~~~L~a~~~Sl~~----~~~~~~~e~-~vLdD~~d~~~~~~e~~~~~~L~~~~~~~~~i~ 195 (691)
T PRK05454 121 PPEARTAILMPIYNEDPARVFAGLRAMYESLAA----TGHGAHFDF-FILSDTRDPDIAAAEEAAWLELRAELGGEGRIF 195 (691)
T ss_pred CCCCceEEEEeCCCCChHHHHHHHHHHHHHHHh----cCCCCCEEE-EEEECCCChhHHHHHHHHHHHHHHhcCCCCcEE
Confidence 3445666666666544432 4677777764321 001123444 8887654321101 011222233443211111
Q ss_pred ccccCCchhHHHHHHHHHHhh-cCCccEEEEeCCceeecHHHHHHHHhhcCCCCceEEEEeccCcccccCCC---cc---
Q 017688 172 HVEGYLELSAKTKIFFATAVA-LWDADFYVKVDDDVHVNIATLGATLARHRSKPRVYIGCMKSGPVLAQKGV---RY--- 244 (367)
Q Consensus 172 f~Dsy~nLt~Kt~~~~~wa~~-~~~a~fvlKvDDDvfVn~~~L~~~L~~~~~~~~ly~G~~~~~pv~r~~~~---K~--- 244 (367)
+..--.|.-.|.-..-.+... ..+.+|++-.|-|+.+..+.|.+.+......++ +|-+...+...+..+ ++
T Consensus 196 yr~R~~n~~~KaGNl~~~~~~~~~~~eyivvLDADs~m~~d~L~~lv~~m~~dP~--vGlVQt~~~~~n~~slfaR~qqf 273 (691)
T PRK05454 196 YRRRRRNVGRKAGNIADFCRRWGGAYDYMVVLDADSLMSGDTLVRLVRLMEANPR--AGLIQTLPVAVGADTLFARLQQF 273 (691)
T ss_pred EEECCcCCCccHHHHHHHHHhcCCCcCEEEEEcCCCCCCHHHHHHHHHHHhhCcC--EEEEeCCccCcCCCCHHHHHHHH
Confidence 222334444566655555443 247799999999999999999998876533344 355542222111111 11
Q ss_pred ----ccc------cccccCCCCCccCcCcccCcceecHHHHHHHHHhcccc-------CCCCCchHHHHHHHh--cCCCe
Q 017688 245 ----HEP------EYWKFGEEGNKYFRHATGQLYAISKDLASYISINQHVL-------HKFANEDVSLGSWFI--GLDAE 305 (367)
Q Consensus 245 ----yvp------~~~~~g~~~~~Yp~y~~G~gYvlS~dla~~I~~~~~~l-------~~~~~EDV~vG~~l~--~l~v~ 305 (367)
|-+ ..|..| .. ...|...|+.+++...+..- +.+ ...--||...|..+. |-.|.
T Consensus 274 ~~~~y~~~~~~G~~~w~~~---~g---~f~G~naIiR~~af~~~~gl-p~L~g~~p~~~~~LseD~~~a~~l~~~GyrV~ 346 (691)
T PRK05454 274 ATRVYGPLFAAGLAWWQGG---EG---NYWGHNAIIRVKAFAEHCGL-PPLPGRGPFGGHILSHDFVEAALMRRAGWGVW 346 (691)
T ss_pred HHHHHHHHHHhhhhhhccC---cc---ccccceEEEEHHHHHHhcCC-ccccccCCCCCCcccHHHHHHHHHHHCCCEEE
Confidence 000 011101 01 12366678888876655311 111 123478999999996 44566
Q ss_pred eeCC
Q 017688 306 HIDD 309 (367)
Q Consensus 306 ~~~~ 309 (367)
.+++
T Consensus 347 ~~pd 350 (691)
T PRK05454 347 LAPD 350 (691)
T ss_pred EcCc
Confidence 6666
No 66
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=28.85 E-value=4.4e+02 Score=23.83 Aligned_cols=120 Identities=13% Similarity=0.047 Sum_probs=66.2
Q ss_pred HHHHHhhcCCccEEEEeCCceeecHHHHHHHHhhcCCC-Cce-EEEE-eccCcccccCCCccccccccc-cC-----CCC
Q 017688 186 FFATAVALWDADFYVKVDDDVHVNIATLGATLARHRSK-PRV-YIGC-MKSGPVLAQKGVRYHEPEYWK-FG-----EEG 256 (367)
Q Consensus 186 ~~~wa~~~~~a~fvlKvDDDvfVn~~~L~~~L~~~~~~-~~l-y~G~-~~~~pv~r~~~~K~yvp~~~~-~g-----~~~ 256 (367)
++..+.+....+|++.+|+|+.+..+.|.+.+...... +.+ ++|. +...........+.+..+.+. |+ -..
T Consensus 75 a~n~g~~~a~gd~i~~~DaD~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (241)
T cd06427 75 ACNYALAFARGEYVVIYDAEDAPDPDQLKKAVAAFARLDDKLACVQAPLNYYNARENWLTRMFALEYAAWFDYLLPGLAR 154 (241)
T ss_pred HHHHHHHhcCCCEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEeCceEeeCCCccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45566665678999999999999999999888776432 333 2222 111000000000111000000 00 000
Q ss_pred CccCcCcccCcceecHHHHHHHHHhccccCCCCCchHHHHHHHhcC--CCeeeC
Q 017688 257 NKYFRHATGQLYAISKDLASYISINQHVLHKFANEDVSLGSWFIGL--DAEHID 308 (367)
Q Consensus 257 ~~Yp~y~~G~gYvlS~dla~~I~~~~~~l~~~~~EDV~vG~~l~~l--~v~~~~ 308 (367)
...+..++|++.++++++.+.+-.-.. ....||..++.=+... .+..++
T Consensus 155 ~~~~~~~~g~~~~~rr~~~~~vgg~~~---~~~~eD~~l~~rl~~~G~r~~~~~ 205 (241)
T cd06427 155 LGLPIPLGGTSNHFRTDVLRELGGWDP---FNVTEDADLGLRLARAGYRTGVLN 205 (241)
T ss_pred cCCeeecCCchHHhhHHHHHHcCCCCc---ccchhhHHHHHHHHHCCceEEEec
Confidence 123334688899999999988743222 1247999998887544 444444
No 67
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine . This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.
Probab=28.50 E-value=4.2e+02 Score=23.44 Aligned_cols=44 Identities=18% Similarity=0.238 Sum_probs=31.0
Q ss_pred HHHHhhcCCccEEEEeCCceeecHHHHHHHHhhcCCCCceEEEE
Q 017688 187 FATAVALWDADFYVKVDDDVHVNIATLGATLARHRSKPRVYIGC 230 (367)
Q Consensus 187 ~~wa~~~~~a~fvlKvDDDvfVn~~~L~~~L~~~~~~~~ly~G~ 230 (367)
+..+.+....+|++.+|+|..+..+.|...+......+...+|+
T Consensus 76 ~N~g~~~a~gd~i~~lD~D~~~~~~~l~~~~~~~~~~~~~~v~~ 119 (219)
T cd06913 76 KNQAIAQSSGRYLCFLDSDDVMMPQRIRLQYEAALQHPNSIIGC 119 (219)
T ss_pred HHHHHHhcCCCEEEEECCCccCChhHHHHHHHHHHhCCCcEEEE
Confidence 34444555789999999999999988877665554334445565
No 68
>PRK10018 putative glycosyl transferase; Provisional
Probab=26.04 E-value=5.9e+02 Score=24.39 Aligned_cols=34 Identities=24% Similarity=0.281 Sum_probs=26.5
Q ss_pred HHHHhhcCCccEEEEeCCceeecHHHHHHHHhhc
Q 017688 187 FATAVALWDADFYVKVDDDVHVNIATLGATLARH 220 (367)
Q Consensus 187 ~~wa~~~~~a~fvlKvDDDvfVn~~~L~~~L~~~ 220 (367)
...+.+....+|++..|+|..+.++.|..++...
T Consensus 77 ~N~gi~~a~g~~I~~lDaDD~~~p~~l~~~~~~~ 110 (279)
T PRK10018 77 RNQAIMLAQGEYITGIDDDDEWTPNRLSVFLAHK 110 (279)
T ss_pred HHHHHHHcCCCEEEEECCCCCCCccHHHHHHHHH
Confidence 3444444688999999999999998888777654
No 69
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=25.32 E-value=1.1e+02 Score=18.57 Aligned_cols=19 Identities=37% Similarity=0.583 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 017688 53 IQALDKTISNLEMELAAAR 71 (367)
Q Consensus 53 ~~~~~~~~~~le~el~~~~ 71 (367)
+..+..+|+.||-+|+..+
T Consensus 3 ~~rlr~rI~dLer~L~~C~ 21 (23)
T PF04508_consen 3 MNRLRNRISDLERQLSECR 21 (23)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4566778888888888654
No 70
>PLN03182 xyloglucan 6-xylosyltransferase; Provisional
Probab=25.23 E-value=4.7e+02 Score=27.14 Aligned_cols=93 Identities=15% Similarity=0.156 Sum_probs=55.9
Q ss_pred HHHHHHhhcCCcccccccccCCeEEEEEeccCCCC-----Cc-hhHHHHHH---HhhhCCCEEEecc---cccCCchhHH
Q 017688 115 DSVRATWMPQGDKRKKLEEEKGIVMRFVIGHSATS-----GG-ILDRAIEA---EDKKHGDFLRLEH---VEGYLELSAK 182 (367)
Q Consensus 115 ~aIR~TW~~~~~~l~~l~~~~~v~~~FvlG~s~~~-----~~-~~~~~L~~---E~~~~~Dil~ldf---~Dsy~nLt~K 182 (367)
+.-|+.|........... ...-+++.|.|....+ ++ .+++.+++ =++.||=-+..+. .+.......|
T Consensus 106 d~~R~~wl~~~p~~~~~~-~g~prVviVT~sdp~~c~n~~gd~yLlks~kNK~dYAr~HGY~~fyn~~~ld~~~p~~WaK 184 (429)
T PLN03182 106 DEQRRRWLRKNPGFPSFV-NGKPRVLLVTGSQPKPCENPVGDHYLLKSLKNKIDYCRLHGIEIFYNMAHLDAEMAGFWAK 184 (429)
T ss_pred HHHHHHHHHhCCCCCCcc-CCCCCEEEEeCCCCCcCCCcccHHHHHHHHHHHHHHHHHhCCEEEeehhhcCcCCCcchhH
Confidence 445667776532111111 1234677788776542 11 23333332 3567774444453 2234456778
Q ss_pred HHHHHHHHhhcCCccEEEEeCCceee
Q 017688 183 TKIFFATAVALWDADFYVKVDDDVHV 208 (367)
Q Consensus 183 t~~~~~wa~~~~~a~fvlKvDDDvfV 208 (367)
.-++.+-+.++|+++|+.=+|.|+++
T Consensus 185 lpaLR~aM~~~PeaEWiWWLDsDALI 210 (429)
T PLN03182 185 LPLLRKLMLAHPEVEWIWWMDSDALF 210 (429)
T ss_pred HHHHHHHHHHCCCceEEEEecCCcee
Confidence 88888888889999999999999987
No 71
>PF09258 Glyco_transf_64: Glycosyl transferase family 64 domain; InterPro: IPR015338 Members of this entry catalyse the transfer reaction of N-acetylglucosamine and N-acetylgalactosamine from the respective UDP-sugars to the non-reducing end of [glucuronic acid]beta 1-3[galactose]beta 1-O-naphthalenemethanol, an acceptor substrate analogue of the natural common linker of various glycosylaminoglycans. They are also required for the biosynthesis of heparan-sulphate []. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0031227 intrinsic to endoplasmic reticulum membrane; PDB: 1ON6_B 1OMZ_B 1OMX_B 1ON8_B.
Probab=24.91 E-value=79 Score=30.05 Aligned_cols=101 Identities=16% Similarity=0.181 Sum_probs=53.3
Q ss_pred CCccEEEEeCCceeecHHHHHHHHhhcCCCCceEEEEeccCcccccCCCccccccccccCCCCCccCcCcccCcceecHH
Q 017688 194 WDADFYVKVDDDVHVNIATLGATLARHRSKPRVYIGCMKSGPVLAQKGVRYHEPEYWKFGEEGNKYFRHATGQLYAISKD 273 (367)
Q Consensus 194 ~~a~fvlKvDDDvfVn~~~L~~~L~~~~~~~~ly~G~~~~~pv~r~~~~K~yvp~~~~~g~~~~~Yp~y~~G~gYvlS~d 273 (367)
...+-|+-+|||+.++.+.|...+..-+..+.-.+|.....-.....+++|-....| .+.| .-...++-++.+.
T Consensus 74 i~T~AVl~~DDDv~~~~~~l~faF~~W~~~pdrlVGf~~R~h~~~~~~~~~~Y~~~~-----~~~y-SmvLt~aaf~h~~ 147 (247)
T PF09258_consen 74 IETDAVLSLDDDVMLSCDELEFAFQVWREFPDRLVGFPPRSHSWDPSSGRWKYTSEW-----SNEY-SMVLTGAAFYHRY 147 (247)
T ss_dssp --SSEEEEEETTEEE-HHHHHHHHHHHCCSTTSEEES-EEEEEEE-ETTEEEEE-SS-----S--B-SEE-TTEEEEETH
T ss_pred cCcceEEEecCCcccCHHHHHHHHHHHHhChhheeCCccceeecCCCccccccccCC-----CCcc-hhhhhhhHhhcch
Confidence 367889999999999999998877776666666788764211111123444221111 1223 2344555566666
Q ss_pred HHHHHHHhcc-----c-cCCCCCchHHHHHHHh
Q 017688 274 LASYISINQH-----V-LHKFANEDVSLGSWFI 300 (367)
Q Consensus 274 la~~I~~~~~-----~-l~~~~~EDV~vG~~l~ 300 (367)
.........+ . -....=||+.+-..+.
T Consensus 148 yl~~Y~~~~p~~~r~~Vd~~~NCEDI~mNflvs 180 (247)
T PF09258_consen 148 YLELYTHWLPASIREYVDEHFNCEDIAMNFLVS 180 (247)
T ss_dssp HHHHHHT-S-HHHHHHHHHHTS-HHHHHHHHHH
T ss_pred HHHHHhcCcHHHHHHHHhccCCHHHHHHHHHHH
Confidence 6554433111 1 1234679999987774
No 72
>PF07507 WavE: WavE lipopolysaccharide synthesis; InterPro: IPR011122 These proteins are encoded by putative wav gene clusters, which are responsible for the synthesis of the core oligosaccharide (OS) region of Vibrio cholerae lipopolysaccharide [].
Probab=21.98 E-value=1.4e+02 Score=29.61 Aligned_cols=64 Identities=14% Similarity=0.240 Sum_probs=42.7
Q ss_pred HHHHHHHHHhhcCCccEEEEeCCceeecHHHHHHHHhhcCCC--------CceEEEEeccCcccccCC----Cccccccc
Q 017688 182 KTKIFFATAVALWDADFYVKVDDDVHVNIATLGATLARHRSK--------PRVYIGCMKSGPVLAQKG----VRYHEPEY 249 (367)
Q Consensus 182 Kt~~~~~wa~~~~~a~fvlKvDDDvfVn~~~L~~~L~~~~~~--------~~ly~G~~~~~pv~r~~~----~K~yvp~~ 249 (367)
=|..+++-| ..+|+||+=.|.++.=+++++++..+..+ +++.+..+. .+++. -.++.+++
T Consensus 86 St~aGL~~~----~~~Ya~KlRtD~~l~~~~~l~~~~~~~~~~~~~~~~~~RIv~~~~f----~~~~~~~~~~pfh~SD~ 157 (311)
T PF07507_consen 86 STLAGLKAA----KTKYAMKLRTDNRLTGNNFLDLYEKYPDRESNYSFFNERIVTSSFF----TRDPRRGEPVPFHISDF 157 (311)
T ss_pred HHHHHHHHh----CCceEEEEcccccccchHHHHHHHHhcccCcccccccCcEEecccc----ccCcccCccccccHhhH
Confidence 467777766 35999999999999999999999876543 222222211 12222 24677788
Q ss_pred cccC
Q 017688 250 WKFG 253 (367)
Q Consensus 250 ~~~g 253 (367)
++||
T Consensus 158 f~FG 161 (311)
T PF07507_consen 158 FYFG 161 (311)
T ss_pred HHhc
Confidence 8888
No 73
>PF03490 Varsurf_PPLC: Variant-surface-glycoprotein phospholipase C; InterPro: IPR003633 Variant-surface-glycoprotein phospholipase C, by hydrolysis of the attached glycolipid, releases soluble variant surface glycoprotein containing phosphoinositol from the cell wall after lysis. It catalyses the conversion of variant-surface-glycoprotein 1,2 didecanoyl-SN-phosphatidylinositol and water to 1,2-didecanoylglycerol and the soluble variant-surface-glycoprotein. It also cleaves similar membrane anchors on some mammalian proteins.; GO: 0047396 glycosylphosphatidylinositol diacylglycerol-lyase activity, 0006650 glycerophospholipid metabolic process
Probab=21.43 E-value=54 Score=23.66 Aligned_cols=26 Identities=23% Similarity=0.396 Sum_probs=20.1
Q ss_pred HHhhcCCcccccccccCCeEEEEEeccCC
Q 017688 119 ATWMPQGDKRKKLEEEKGIVMRFVIGHSA 147 (367)
Q Consensus 119 ~TW~~~~~~l~~l~~~~~v~~~FvlG~s~ 147 (367)
++||++. +..+++..|.-+|+.|...
T Consensus 9 qSWM~DL---rS~I~~~~I~ql~ipGsHn 34 (51)
T PF03490_consen 9 QSWMSDL---RSSIGEMAITQLFIPGSHN 34 (51)
T ss_pred HHHHHHH---HHHHhcceeeeEEeccccc
Confidence 6899874 3455678899999999874
No 74
>PRK14716 bacteriophage N4 adsorption protein B; Provisional
Probab=21.21 E-value=9.9e+02 Score=25.27 Aligned_cols=111 Identities=12% Similarity=-0.050 Sum_probs=59.4
Q ss_pred CccEEEEeCCceeecHHHHHHHHhhcCCCCceEEEEeccCcccccCCCcc----ccccccc-cC--C---CCCccCcCcc
Q 017688 195 DADFYVKVDDDVHVNIATLGATLARHRSKPRVYIGCMKSGPVLAQKGVRY----HEPEYWK-FG--E---EGNKYFRHAT 264 (367)
Q Consensus 195 ~a~fvlKvDDDvfVn~~~L~~~L~~~~~~~~ly~G~~~~~pv~r~~~~K~----yvp~~~~-~g--~---~~~~Yp~y~~ 264 (367)
++++++-.|-|..+.++.|..+-. .-+...+.-.-+...+ .+.+.| |.-+... +. . ..-.-+-.++
T Consensus 158 ~~d~vvi~DAD~~v~Pd~Lr~~~~-~~~~~~~VQ~pv~~~~---~~~~~~~ag~y~~ef~~~~~~~l~~r~~LG~~~~~~ 233 (504)
T PRK14716 158 RFAIIVLHDAEDVIHPLELRLYNY-LLPRHDFVQLPVFSLP---RDWGEWVAGTYMDEFAESHLKDLPVREALGGLIPSA 233 (504)
T ss_pred CcCEEEEEcCCCCcCccHHHHHHh-hcCCCCEEecceeccC---CchhHHHHHHHHHHHHHHHHHHHHHHHhcCCccccC
Confidence 469999999999999999876533 2233322111011100 111111 1100000 00 0 0001223378
Q ss_pred cCcceecHHHHHHHHHhc---cccCCCCCchHHHHHHHhcCC--CeeeCC
Q 017688 265 GQLYAISKDLASYISINQ---HVLHKFANEDVSLGSWFIGLD--AEHIDD 309 (367)
Q Consensus 265 G~gYvlS~dla~~I~~~~---~~l~~~~~EDV~vG~~l~~l~--v~~~~~ 309 (367)
|.++++++++++.+.... ..-...--||.-+|.-+...| +...++
T Consensus 234 Gtg~afRR~aLe~l~~~~GG~~fd~~sLTED~dLglRL~~~G~rv~y~p~ 283 (504)
T PRK14716 234 GVGTAFSRRALERLAAERGGQPFDSDSLTEDYDIGLRLKRAGFRQIFVRV 283 (504)
T ss_pred CeeEEeEHHHHHHHHhhcCCCCCCCCCcchHHHHHHHHHHCCCEEEEecc
Confidence 999999999999986422 122334579999999996544 444443
Done!