Query 017688
Match_columns 367
No_of_seqs 282 out of 1225
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 03:22:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017688.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017688hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2j0a_A Beta-1,3-N-acetylglucos 99.9 7.8E-26 2.7E-30 216.6 15.2 194 96-316 11-216 (280)
2 1xhb_A Polypeptide N-acetylgal 92.9 2.7 9.4E-05 41.3 15.8 165 137-308 62-251 (472)
3 2d7i_A Polypeptide N-acetylgal 91.1 7.9 0.00027 39.5 17.2 158 138-302 146-323 (570)
4 2ffu_A Ppgalnact-2, polypeptid 89.7 10 0.00036 37.5 16.4 161 137-308 99-283 (501)
5 1qg8_A Protein (spore coat pol 88.9 11 0.00039 32.9 16.6 160 136-309 30-208 (255)
6 4fix_A UDP-galactofuranosyl tr 85.1 20 0.00067 37.5 15.8 117 185-303 258-403 (657)
7 2z86_A Chondroitin synthase; G 78.6 50 0.0017 33.4 15.8 117 186-303 165-316 (625)
8 3bcv_A Putative glycosyltransf 75.7 33 0.0011 29.4 11.8 165 136-310 34-220 (240)
9 2z86_A Chondroitin synthase; G 71.8 49 0.0017 33.4 13.6 155 136-308 404-565 (625)
10 4hg6_A Cellulose synthase subu 62.4 68 0.0023 34.0 12.7 126 186-314 229-367 (802)
11 4dzn_A Coiled-coil peptide CC- 55.2 17 0.00058 22.2 3.7 28 45-72 3-30 (33)
12 2pnv_A Small conductance calci 39.6 36 0.0012 22.8 3.8 31 39-72 7-37 (43)
13 2c0n_A A197; thermophil protei 36.6 2.3E+02 0.0078 25.2 10.8 145 139-299 3-158 (203)
14 2bo4_A Mannosylglycerate synth 32.4 1.8E+02 0.0062 28.1 9.3 168 137-307 29-209 (397)
15 2lnd_A De novo designed protei 31.8 69 0.0024 24.5 4.8 71 104-192 31-104 (112)
16 1fo8_A Alpha-1,3-mannosyl-glyc 31.5 93 0.0032 29.7 6.9 83 185-279 89-178 (343)
17 2akf_A Coronin-1A; coiled coil 29.6 83 0.0029 19.3 3.9 26 44-69 6-31 (32)
18 2z5i_A TM, general control pro 24.5 96 0.0033 21.4 4.1 24 49-72 10-33 (52)
19 2l5g_B Putative uncharacterize 23.6 1.1E+02 0.0037 20.4 3.9 26 41-66 13-38 (42)
20 1g6u_A Domain swapped dimer; d 23.0 1.1E+02 0.0037 20.1 3.8 22 49-70 25-46 (48)
21 3r4h_A Coiled coil helix CC-TE 22.7 1.1E+02 0.0038 18.7 3.5 28 45-72 3-30 (34)
No 1
>2j0a_A Beta-1,3-N-acetylglucosaminyltransferase manic FR; glycosyltransferase, developmental protein, transmembrane, G apparatus, notch signaling; 1.8A {Mus musculus} PDB: 2j0b_A*
Probab=99.93 E-value=7.8e-26 Score=216.58 Aligned_cols=194 Identities=15% Similarity=0.157 Sum_probs=132.2
Q ss_pred CceeEEEEEECCCC-CHHHHHHHHHHhhcCCcccccccccCCeEEEEEeccCCCCCchhHHHHHHHhhhCCCEEEeccc-
Q 017688 96 RKYLMVVGINSAFS-SRKRRDSVRATWMPQGDKRKKLEEEKGIVMRFVIGHSATSGGILDRAIEAEDKKHGDFLRLEHV- 173 (367)
Q Consensus 96 ~~~~llI~V~S~p~-~~~rR~aIR~TW~~~~~~l~~l~~~~~v~~~FvlG~s~~~~~~~~~~L~~E~~~~~Dil~ldf~- 173 (367)
..-.|+|+|+|++. +.+|+.+||+||++.+.. ..|+.+... +.. +... ..+++++.++.
T Consensus 11 ~~~~I~~~V~T~~~~~~~R~~~I~~TW~~~~~~-----------~~fifsd~~--d~~----l~~~--~~~~~~~~~~~~ 71 (280)
T 2j0a_A 11 QLGDIFIAVKTTWAFHRSRLDLLLDTWVSRIRQ-----------QTFIFTDSP--DER----LQER--LGPHLVVTQCSA 71 (280)
T ss_dssp CGGGEEEEEECCGGGTTTTHHHHHHTGGGGSGG-----------GEEEEESSC--CHH----HHHH--HGGGEEECCC--
T ss_pred CcccEEEEEECcHHHHHHHHHHHHHHHhccCCC-----------ceEEEcCCC--ccc----cccc--ccccceeccccc
Confidence 34578899999998 557899999999987631 123333222 122 2222 24578887764
Q ss_pred -ccCCchhHHHHHHHHHHhhcCCccEEEEeCCceeecHHHHHHHHhhcCCCCceEEEEeccCcccccCCCcccccccccc
Q 017688 174 -EGYLELSAKTKIFFATAVALWDADFYVKVDDDVHVNIATLGATLARHRSKPRVYIGCMKSGPVLAQKGVRYHEPEYWKF 252 (367)
Q Consensus 174 -Dsy~nLt~Kt~~~~~wa~~~~~a~fvlKvDDDvfVn~~~L~~~L~~~~~~~~ly~G~~~~~pv~r~~~~K~yvp~~~~~ 252 (367)
+++.+|+.|+...+.+.. +++++|++|+|||||||+++|+++|..+++..++|+|+.....+++. ++++|.+.+
T Consensus 72 ~~~~~~l~~K~~~~~~~~l-~~~~~Wf~~~DDDtyv~~~nL~~~L~~~d~~~~~YiG~~~~~~~~~~---~~~~~~~~~- 146 (280)
T 2j0a_A 72 EHSHPALSCKMAAEFDAFL-VSGLRWFCHVDDDNYVNPKALLQLLKTFPQDRDVYVGKPSLNRPIHA---SELQSKQRT- 146 (280)
T ss_dssp -----CCCHHHHHHHHHHH-HHTCSEEEEEETTEEECHHHHHHHHTTSCTTSCCEEECEEC-------------------
T ss_pred cccccchHHHHHHHHHHHh-CCCCcEEEEeCCCcEEcHHHHHHHHHhCCCCCCEEEEEeccCccccc---cccCccccc-
Confidence 477889999999998754 36999999999999999999999999999999999999764333221 345554222
Q ss_pred CCCCCccCcCc-ccCcceecHHHHHHHHHhcccc-------CCCCCchHHHHHHHh-cCCCeeeCCCCcccCC
Q 017688 253 GEEGNKYFRHA-TGQLYAISKDLASYISINQHVL-------HKFANEDVSLGSWFI-GLDAEHIDDRRLCCGT 316 (367)
Q Consensus 253 g~~~~~Yp~y~-~G~gYvlS~dla~~I~~~~~~l-------~~~~~EDV~vG~~l~-~l~v~~~~~~~f~~~~ 316 (367)
+...| +|| +|+|||||++++++|+.....- .....||+++|+|+. .+||...+.++|+...
T Consensus 147 --~~~~~-~y~~GGaG~vlSr~~l~~l~~~~~~~~~~~~~~~~~~~dD~~lG~Cl~~~lGV~~~~~~~Fh~~~ 216 (280)
T 2j0a_A 147 --KLVRF-WFATGGAGFCINRQLALKMVPWASGSHFVDTSALIRLPDDCTVGYIIECKLGGRLQPSPLFHSHL 216 (280)
T ss_dssp ------C-CEECGGGCEEEEHHHHHHHHHHHTTCTTSCCTTTTTSCHHHHHHHHHHHTTCCCEEECTTCCCSS
T ss_pred --ccccc-CcccCCCEEEECHHHHHHHHHhhcccccccccccCCCCccHHHHHHHHhcCCCCceecccccCCC
Confidence 12245 466 6789999999999999753321 223469999999998 9999999999997643
No 2
>1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1; glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus musculus} SCOP: b.42.2.1 c.68.1.17
Probab=92.86 E-value=2.7 Score=41.33 Aligned_cols=165 Identities=16% Similarity=0.123 Sum_probs=87.0
Q ss_pred eEEEEEeccCCCCCchhHHHHHHHhhhCC-CEEEecccccCCchhHHHHHHHHHHhhcCCccEEEEeCCceeecHHHHHH
Q 017688 137 IVMRFVIGHSATSGGILDRAIEAEDKKHG-DFLRLEHVEGYLELSAKTKIFFATAVALWDADFYVKVDDDVHVNIATLGA 215 (367)
Q Consensus 137 v~~~FvlG~s~~~~~~~~~~L~~E~~~~~-Dil~ldf~Dsy~nLt~Kt~~~~~wa~~~~~a~fvlKvDDDvfVn~~~L~~ 215 (367)
..++.|-..|. ++...+.|++-.+.+. .+..+...+.. . ...+...+.+....+|++..|+|+.+..+.|..
T Consensus 62 ~EIIvVDd~S~--d~~t~~~l~~~~~~~~~~v~vi~~~~n~---G--~~~a~N~g~~~A~gd~i~flD~D~~~~p~~L~~ 134 (472)
T 1xhb_A 62 EEIVLVDDASE--RDFLKRPLESYVKKLKVPVHVIRMEQRS---G--LIRARLKGAAVSRGQVITFLDAHCECTAGWLEP 134 (472)
T ss_dssp EEEEEEECSCC--CGGGTHHHHHHHHSSSSCEEEEECSSCC---C--HHHHHHHHHHHCCSSEEEEEESSEEECTTCHHH
T ss_pred eEEEEEECCCC--cHHHHHHHHHHHHHCCCcEEEEECCCCC---C--hHHHHHHHHHhccCCeEEEECCCeEeCccHHHH
Confidence 35666665443 2234455555556666 45554443322 2 223344444545789999999999999888887
Q ss_pred HHhhcCCCCceE-EEEec--c-CcccccCCC-------ccccccccc-c---------CC-CCCccCcCcccCcceecHH
Q 017688 216 TLARHRSKPRVY-IGCMK--S-GPVLAQKGV-------RYHEPEYWK-F---------GE-EGNKYFRHATGQLYAISKD 273 (367)
Q Consensus 216 ~L~~~~~~~~ly-~G~~~--~-~pv~r~~~~-------K~yvp~~~~-~---------g~-~~~~Yp~y~~G~gYvlS~d 273 (367)
++......+... .|.+. . ......... .|.....|. + .+ ......+++.|++++++++
T Consensus 135 ll~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~ 214 (472)
T 1xhb_A 135 LLARIKHDRRTVVCPIIDVISDDTFEYMAGSDMTYGGFNWKLNFRWYPVPQREMDRRKGDRTLPVRTPTMAGGLFSIDRD 214 (472)
T ss_dssp HHHHHHHCTTEEEEEEEEEECSSSCCEECCCTTEEEEECTTCCEEEEECCHHHHHHTTTCTTSCEECSBCCSSSEEEEHH
T ss_pred HHHHHHhCCCEEEEeeeeeEcCCCceeccCCCcccceeeccceeecccCCHHHHhcccCCCCCcccCccccceeEEEEHH
Confidence 776654333333 33321 1 100000000 011110000 0 00 0022335688999999999
Q ss_pred HHHHHHHhccccCCCCCchHHHHHHHh--cCCCeeeC
Q 017688 274 LASYISINQHVLHKFANEDVSLGSWFI--GLDAEHID 308 (367)
Q Consensus 274 la~~I~~~~~~l~~~~~EDV~vG~~l~--~l~v~~~~ 308 (367)
+...+-.-...+..+..||+-++.=+. |..+..++
T Consensus 215 ~~~~iGgfde~~~~~g~ED~dl~~R~~~~G~~i~~~p 251 (472)
T 1xhb_A 215 YFQEIGTYDAGMDIWGGENLEISFRIWQCGGTLEIVT 251 (472)
T ss_dssp HHHHTTSCCTTSCTTCCCCSHHHHHHHHTTCEEEEEE
T ss_pred HHHHcCCCCCcccccCchhHHHHHHHHhcCCeEEEcc
Confidence 998875433444445579988877664 44444443
No 3
>2d7i_A Polypeptide N-acetylgalactosaminyltransferase 10; beta trefoil, rossmann fold; HET: NAG NGA UDP; 2.50A {Homo sapiens} PDB: 2d7r_A*
Probab=91.08 E-value=7.9 Score=39.46 Aligned_cols=158 Identities=12% Similarity=0.034 Sum_probs=83.9
Q ss_pred EEEEEeccCCCCCchhHHHHHHHhhhCCCEEEecccccCCchhHHHHHHHHHHhhcCCccEEEEeCCceeecHHHHHHHH
Q 017688 138 VMRFVIGHSATSGGILDRAIEAEDKKHGDFLRLEHVEGYLELSAKTKIFFATAVALWDADFYVKVDDDVHVNIATLGATL 217 (367)
Q Consensus 138 ~~~FvlG~s~~~~~~~~~~L~~E~~~~~Dil~ldf~Dsy~nLt~Kt~~~~~wa~~~~~a~fvlKvDDDvfVn~~~L~~~L 217 (367)
.++.|-..|. +.++.+.|++..+.+..|..+...+. ..+. .+...+.+....+|++..|+|+.+..+-|..++
T Consensus 146 EIIVVDDgS~--D~tl~~~l~~~~~~~~~v~vi~~~~n-~G~~----~A~N~G~~~A~gd~i~fLD~D~~~~p~~L~~ll 218 (570)
T 2d7i_A 146 EIVLVDDFSD--REHLKKPLEDYMALFPSVRILRTKKR-EGLI----RTRMLGASVATGDVITFLDSHCEANVNWLPPLL 218 (570)
T ss_dssp EEEEEECSCC--CGGGTHHHHHHHTTSTTEEEEECSSC-CCHH----HHHHHHHHHCCSSEEEECCSSEEECTTCSHHHH
T ss_pred EEEEEECCCC--cHHHHHHHHHHHHhCCeEEEEECCCC-CCHH----HHHHHHHHhcCCCEEEEEcCCccccccHHHHHH
Confidence 4666665443 23335556665666766655543332 2222 233344444478999999999999987777777
Q ss_pred hhcCCCCceEEEEec---cC-cc-ccc---CCC----cccc-----c--cccccCCC-CCccCcCcccCcceecHHHHHH
Q 017688 218 ARHRSKPRVYIGCMK---SG-PV-LAQ---KGV----RYHE-----P--EYWKFGEE-GNKYFRHATGQLYAISKDLASY 277 (367)
Q Consensus 218 ~~~~~~~~ly~G~~~---~~-pv-~r~---~~~----K~yv-----p--~~~~~g~~-~~~Yp~y~~G~gYvlS~dla~~ 277 (367)
......+.+.+|... .+ .. .+. ... .|.. + ....+..+ .....+++.|+++++++++...
T Consensus 219 ~~l~~~~~~vv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~~~~ 298 (570)
T 2d7i_A 219 DRIARNRKTIVCPMIDVIDHDDFRYETQAGDAMRGAFDWEMYYKRIPIPPELQKADPSDPFESPVMAGGLFAVDRKWFWE 298 (570)
T ss_dssp HHHHHCTTEEEEEEEEEECTTTCCEECCTTSSCEEEECTTCCEEEECCCTTTCCSSTTSCEECSSCCSSSEEEEHHHHHH
T ss_pred HHHHhCCCEEEeeeeeccCCCchhhccccCCcccccccccccccccccchhhhccCCCcceecccccceEEEEEHHHHHh
Confidence 665433444444321 11 00 000 000 0100 0 00000000 0112346789999999999988
Q ss_pred HHHhccccCCCCCchHHHHHHHhcC
Q 017688 278 ISINQHVLHKFANEDVSLGSWFIGL 302 (367)
Q Consensus 278 I~~~~~~l~~~~~EDV~vG~~l~~l 302 (367)
+-.-...+..+..||+-+..-+...
T Consensus 299 iGgfDe~~~~~g~ED~dl~~Rl~~~ 323 (570)
T 2d7i_A 299 LGGYDPGLEIWGGEQYEISFKVWMC 323 (570)
T ss_dssp TTSSCTTCCSSSSHHHHHHHHHHHT
T ss_pred cCCCCCcccccCcchHHHHHHHHhC
Confidence 8543334444447999997766433
No 4
>2ffu_A Ppgalnact-2, polypeptide N-acetylgalactosaminyltransferase 2, protein-UDP; ppgalnact, mucin, glycosyltransferase; HET: UDP; 1.64A {Homo sapiens} PDB: 2ffv_A*
Probab=89.71 E-value=10 Score=37.54 Aligned_cols=161 Identities=12% Similarity=-0.006 Sum_probs=84.0
Q ss_pred eEEEEEeccCCCCCchhHHHHHHHhhhCCCEEEecccccCCchhHHHHHHHHHHhhcCCccEEEEeCCceeecHHHHHHH
Q 017688 137 IVMRFVIGHSATSGGILDRAIEAEDKKHGDFLRLEHVEGYLELSAKTKIFFATAVALWDADFYVKVDDDVHVNIATLGAT 216 (367)
Q Consensus 137 v~~~FvlG~s~~~~~~~~~~L~~E~~~~~Dil~ldf~Dsy~nLt~Kt~~~~~wa~~~~~a~fvlKvDDDvfVn~~~L~~~ 216 (367)
..+++|-..|.+ .++ ....+.+..+..+...+ |.. ...++..+.+.-..+|++.+|+|+.+.++-|..+
T Consensus 99 ~EIIvVDDgS~D--~t~----~~~~~~~~~v~vi~~~~---n~G--~~~A~N~G~~~A~gd~i~flD~D~~~~p~~L~~l 167 (501)
T 2ffu_A 99 KEIILVDDYSND--PED----GALLGKIEKVRVLRNDR---REG--LMRSRVRGADAAQAKVLTFLDSHCECNEHWLEPL 167 (501)
T ss_dssp EEEEEEECSCSC--THH----HHGGGGBTTEEEEECSS---CCH--HHHHHHHHHHHCCSSEEEECCSSEEECTTCHHHH
T ss_pred eeEEEEECCCCc--hHH----HHHHhcCCCEEEEECCC---CcC--HHHHHHHHHHhcCCCEEEEECCCcccCccHHHHH
Confidence 356777654432 222 22334566665544333 222 2334445555457899999999999998888777
Q ss_pred HhhcCCCCceEEEEec---c-Cccc--------cc-----CCCccc-cccc-c--ccCCC-CCccCcCcccCcceecHHH
Q 017688 217 LARHRSKPRVYIGCMK---S-GPVL--------AQ-----KGVRYH-EPEY-W--KFGEE-GNKYFRHATGQLYAISKDL 274 (367)
Q Consensus 217 L~~~~~~~~ly~G~~~---~-~pv~--------r~-----~~~K~y-vp~~-~--~~g~~-~~~Yp~y~~G~gYvlS~dl 274 (367)
+......+...++... . .... +. ...+|. .+.. . ...++ .....+++.|++.++++++
T Consensus 168 l~~~~~~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~ 247 (501)
T 2ffu_A 168 LERVAEDRTRVVSPIIDVINMDNFQYVGASADLKGGFDWNLVFKWDYMTPEQRRSRQGNPVAPIKTPMIAGGLFVMDKFY 247 (501)
T ss_dssp HHHHHHCTTEEEEEEEEEECTTTCCEECBCSSEEEEECTTCCEEEEECCHHHHHHTSSCTTSCEECSSCCSSSEEEEHHH
T ss_pred HHHHHhCCCeEEEeeeccCcCCCceeecCCcccceEeeecCCCccccCCHHHHhhccCCCCCcccCccccceEEEEEHHH
Confidence 7665433333333221 0 0000 00 000110 0000 0 00000 1122356789999999999
Q ss_pred HHHHHHhccccCCCCCchHHHHHHHh--cCCCeeeC
Q 017688 275 ASYISINQHVLHKFANEDVSLGSWFI--GLDAEHID 308 (367)
Q Consensus 275 a~~I~~~~~~l~~~~~EDV~vG~~l~--~l~v~~~~ 308 (367)
...+-.-...+..+..||+-+..-+. |..+..++
T Consensus 248 ~~~iGgfde~~~~~g~ED~dl~~Rl~~~G~~i~~~p 283 (501)
T 2ffu_A 248 FEELGKYDMMMDVWGGENLEISFRVWQCGGSLEIIP 283 (501)
T ss_dssp HHHTTCCCTTCCSSSSHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHhCCCCccccccCcchHHHHHHHHhcCCeEEEcc
Confidence 98885433344444589999976664 44444443
No 5
>1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA); glycosyltransferase, transferase; 1.50A {Bacillus subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A* 1qgs_A*
Probab=88.88 E-value=11 Score=32.88 Aligned_cols=160 Identities=6% Similarity=-0.102 Sum_probs=85.1
Q ss_pred CeEEEEEeccCCCCCchhHHHHHHHhhhCCCEEEecccccC-----CchhHHHHHHHHHHhhcCCccEEEEeCCceeecH
Q 017688 136 GIVMRFVIGHSATSGGILDRAIEAEDKKHGDFLRLEHVEGY-----LELSAKTKIFFATAVALWDADFYVKVDDDVHVNI 210 (367)
Q Consensus 136 ~v~~~FvlG~s~~~~~~~~~~L~~E~~~~~Dil~ldf~Dsy-----~nLt~Kt~~~~~wa~~~~~a~fvlKvDDDvfVn~ 210 (367)
.+.++.|-..+. +.. ..+.++......|..+.....- .|.. .-..+..+.+..+.+|++.+|+|.++..
T Consensus 30 ~~eiivvDd~S~---d~t-~~~~~~~~~~~~i~~i~~~~~~~~~~~~n~G--~~~a~N~gi~~a~g~~i~~lD~Dd~~~~ 103 (255)
T 1qg8_A 30 DFELFIMDDNSN---EET-LNVIRPFLNDNRVRFYQSDISGVKERTEKTR--YAALINQAIEMAEGEYITYATDDNIYMP 103 (255)
T ss_dssp CEEEEEEECSCC---HHH-HHHHGGGGGSTTEEEEECCCCSHHHHHSSCH--HHHHHHHHHHHCCCSEEEEEETTEEECT
T ss_pred ceEEEEEECCCC---chH-HHHHHHHhhcCCEEEEecccccccccccccC--HHHHHHHHHHHcCCCEEEEeCCCCccCh
Confidence 456777765443 222 2333443334555444332100 2332 3344556666568899999999999998
Q ss_pred HHHHHHHhhcC--CCCceEEEEec----c--CcccccCCCccccccccccCCCCCccCcCcccCcceecHHHHHHHH-Hh
Q 017688 211 ATLGATLARHR--SKPRVYIGCMK----S--GPVLAQKGVRYHEPEYWKFGEEGNKYFRHATGQLYAISKDLASYIS-IN 281 (367)
Q Consensus 211 ~~L~~~L~~~~--~~~~ly~G~~~----~--~pv~r~~~~K~yvp~~~~~g~~~~~Yp~y~~G~gYvlS~dla~~I~-~~ 281 (367)
+.|...+.... +.-.+..|.+. . +... ..+..|... + ......++.|++.++.++++..+- .-
T Consensus 104 ~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~----~~~~~~~~~-~---~~~~~~~~~~~~~~~rr~~~~~~g~~f 175 (255)
T 1qg8_A 104 DRLLKMVRELDTHPEKAVIYSASKTYHLNENRDIV----KETVRPAAQ-V---TWNAPCAIDHCSVMHRYSVLEKVKEKF 175 (255)
T ss_dssp THHHHHHHHHHHCTTCCEEEEEEEEEEEC---CEE----EEEEECCCS-C---BSCCTTTSCGGGEEEETHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCceEEEeceEEEEeCCCCcch----hhccCchHH-H---HHhhcCCCccceEEEEHHHHHhhcccc
Confidence 88877776553 23344444432 1 1111 011122110 0 012334578999999999999976 22
Q ss_pred c----cccCCCCCchHHHHHHHhcC-CCeeeCC
Q 017688 282 Q----HVLHKFANEDVSLGSWFIGL-DAEHIDD 309 (367)
Q Consensus 282 ~----~~l~~~~~EDV~vG~~l~~l-~v~~~~~ 309 (367)
. ........||..+..-+... .+..++.
T Consensus 176 ~~~~~~~~~~~~~eD~~~~~r~~~~g~~~~~~~ 208 (255)
T 1qg8_A 176 GSYWDESPAFYRIGDARFFWRVNHFYPFYPLDE 208 (255)
T ss_dssp SSSSCCCGGGSTTHHHHHHHHHTTTCCBEEEEE
T ss_pred cccccCCcccchHHHHHHHHHHHHhCCEEEecC
Confidence 0 01112357999988777533 3444443
No 6
>4fix_A UDP-galactofuranosyl transferase GLFT2; CAZY GT-2 family, glycosyltrans carbohydrate binding, membrane; 2.45A {Mycobacterium tuberculosis} PDB: 4fiy_A*
Probab=85.14 E-value=20 Score=37.46 Aligned_cols=117 Identities=17% Similarity=0.108 Sum_probs=64.8
Q ss_pred HHHHHHhhcCCccEEEEeCCceeecHHHHHHHHhhcCC--CCceEEEEecc--Cc--------ccccCCCccc-cccccc
Q 017688 185 IFFATAVALWDADFYVKVDDDVHVNIATLGATLARHRS--KPRVYIGCMKS--GP--------VLAQKGVRYH-EPEYWK 251 (367)
Q Consensus 185 ~~~~wa~~~~~a~fvlKvDDDvfVn~~~L~~~L~~~~~--~~~ly~G~~~~--~p--------v~r~~~~K~y-vp~~~~ 251 (367)
.+++.|....+++|++..|||+.+..+.|..++..... ...+..|.+.. .+ .+......|. .+...+
T Consensus 258 ~Gl~~A~g~~~~dyIlfLD~D~~~~pd~L~~ll~~l~~~~~~~~vg~~il~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 337 (657)
T 4fix_A 258 RVMYEALKNTDCQQILFMDDDIRLEPDSILRVLAMHRFAKAPMLVGGQMLNLQEPSHLHIMGEVVDRSIFMWTAAPHAEY 337 (657)
T ss_dssp HHHHHHHHHCCCSEEEEECSSEEECTHHHHHHHHHHHHBSSCCEEEEEEEETTSTTEECCSCEEEETTTTEEEECTTCCS
T ss_pred HHHHHHHhcCCCCEEEEECCCCccChhHHHHHHHHHHhCCCcEEEEeEEecCCCCceeeecccEeccccccccccccccc
Confidence 35566655447899999999999998888777765432 22233333431 11 0000000000 000000
Q ss_pred ---cC-------------CCCCccCcCcccCcceecHHHHHHHHHhccccCCCCCchHHHHHHHhcCC
Q 017688 252 ---FG-------------EEGNKYFRHATGQLYAISKDLASYISINQHVLHKFANEDVSLGSWFIGLD 303 (367)
Q Consensus 252 ---~g-------------~~~~~Yp~y~~G~gYvlS~dla~~I~~~~~~l~~~~~EDV~vG~~l~~l~ 303 (367)
|+ ........|++|.+.++.+++.+.+---.. -.+..||+-++.=+...|
T Consensus 338 ~~~f~~~~l~~~~~~~~~~~~~~~v~~~~g~~~lirr~v~~~vGgfd~--~F~~~ED~Dl~lR~~~~G 403 (657)
T 4fix_A 338 DHDFAEYPLNDNNSRSKLLHRRIDVDYNGWWTCMIPRQVAEELGQPLP--LFIKWDDADYGLRAAEHG 403 (657)
T ss_dssp CEETTTSCSSCSSHHHHGGGBCCCCSBCCTTEEEEEHHHHHHHCSCCS--CSSSSHHHHHHHHHHHTT
T ss_pred cccccccccccccccccccccceeccccchhHhHhhHHHHHHhCCChh--HhccCcHHHHHHHHHHcC
Confidence 00 001123457899999999999998743212 123469999988775443
No 7
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=78.64 E-value=50 Score=33.35 Aligned_cols=117 Identities=15% Similarity=0.118 Sum_probs=63.6
Q ss_pred HHHHHhhcCCccEEEEeCCceeecHHHHHHHHhhcCCCCc-eEEEEec---cCc--c---------ccc-----------
Q 017688 186 FFATAVALWDADFYVKVDDDVHVNIATLGATLARHRSKPR-VYIGCMK---SGP--V---------LAQ----------- 239 (367)
Q Consensus 186 ~~~wa~~~~~a~fvlKvDDDvfVn~~~L~~~L~~~~~~~~-ly~G~~~---~~p--v---------~r~----------- 239 (367)
.+..+.+..+.+|++..|+|+.+..+.|..++......+. ..+|... ... . .+.
T Consensus 165 a~N~g~~~a~g~~v~~lD~D~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (625)
T 2z86_A 165 VRNLGLRAAKYNYVAILDCDMAPNPLWVQSYMELLAVDDNVALIGPRKYIDTSKHTYLDFLSQKSLINEIPEIITNNQVA 244 (625)
T ss_dssp HHHHHHHHCCSSEEEEECTTEEECTTHHHHHHHHHHHCTTEEEECCEEEECCTTCCHHHHHHSTTGGGTSCC--------
T ss_pred HHHHHHHhCCcCEEEEECCCCCCCHHHHHHHHHHHhcCCceEEEEeeeeccCcccchhhcccchHHhhhcchhccCCchh
Confidence 3444555458899999999999998888877766542222 2333321 110 0 000
Q ss_pred ------CCCcccccccc---ccCCCCCccCcCcccCcceecHHHHHHHHHhccccCCCCCchHHHHHHHhcCC
Q 017688 240 ------KGVRYHEPEYW---KFGEEGNKYFRHATGQLYAISKDLASYISINQHVLHKFANEDVSLGSWFIGLD 303 (367)
Q Consensus 240 ------~~~K~yvp~~~---~~g~~~~~Yp~y~~G~gYvlS~dla~~I~~~~~~l~~~~~EDV~vG~~l~~l~ 303 (367)
....|...... .+. .......++.|++.+++++++..+---...+..+..||..++.=+...|
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~rr~~l~~iGgfde~~~~~g~ED~dl~~Rl~~~G 316 (625)
T 2z86_A 245 GKVEQNKSVDWRIEHFKNTDNLR-LCNTPFRFFSGGNVAFAKKWLFRAGWFDEEFTHWGGEDNEFGYRLYREG 316 (625)
T ss_dssp -------CCCTHHHHHHHTTTTT-TCSCGGGGCCTTEEEEETHHHHHHCCCCTTCSSCCCHHHHHHHHHHHTT
T ss_pred hhhccCCccccchhhhccccccc-ccCCceeEEeeceeeeEHHHHHHhCCCccccccCCcchhhhhhhHHhCC
Confidence 00001000000 000 0011123478999999999999874322334444579999988775443
No 8
>3bcv_A Putative glycosyltransferase protein; protein structure initiative II, PSI-II NYSGXRC, structural genomics; 2.35A {Bacteroides fragilis}
Probab=75.65 E-value=33 Score=29.38 Aligned_cols=165 Identities=8% Similarity=0.014 Sum_probs=81.0
Q ss_pred CeEEEEEeccCCCCCchhHHHHHHHhhhCCCEEEecccccCCchhHHHHHHHHHHhhcCCccEEEEeCCceeecHHHHHH
Q 017688 136 GIVMRFVIGHSATSGGILDRAIEAEDKKHGDFLRLEHVEGYLELSAKTKIFFATAVALWDADFYVKVDDDVHVNIATLGA 215 (367)
Q Consensus 136 ~v~~~FvlG~s~~~~~~~~~~L~~E~~~~~Dil~ldf~Dsy~nLt~Kt~~~~~wa~~~~~a~fvlKvDDDvfVn~~~L~~ 215 (367)
.+.++.|-..+.+ ...+.+++-.+.+..+..+. .+ |.. .-.+...+.+....+|++.+|+|.++..+.|..
T Consensus 34 ~~eiIvvDd~S~d---~t~~~~~~~~~~~~~i~~i~-~~---n~G--~~~a~N~g~~~a~g~~i~~lD~Dd~~~~~~l~~ 104 (240)
T 3bcv_A 34 DIEIILIDDESPD---NCPKICDDYAAQYPNIKVIH-KK---NAG--LGMACNSGLDVATGEYVAFCDSDDYVDSDMYMT 104 (240)
T ss_dssp SEEEEEEECCCSS---SHHHHHHHHHHHCSSEEEEE-CC---CCC--HHHHHHHHHHHCCSSEEEECCTTCCCCTTHHHH
T ss_pred CeEEEEEECCCCc---CHHHHHHHHHhhCCCEEEEE-CC---CCC--hHHHHHHHHHHcCCCEEEEECCCCcCCHHHHHH
Confidence 4567777655432 23344544455666665554 22 322 223344555555789999999999999888777
Q ss_pred HHhhcCC-CCceEEEEec----cCc----ccccC-CCcccccccc------ccCCCCCcc---C-cCcccCcceecHHHH
Q 017688 216 TLARHRS-KPRVYIGCMK----SGP----VLAQK-GVRYHEPEYW------KFGEEGNKY---F-RHATGQLYAISKDLA 275 (367)
Q Consensus 216 ~L~~~~~-~~~ly~G~~~----~~p----v~r~~-~~K~yvp~~~------~~g~~~~~Y---p-~y~~G~gYvlS~dla 275 (367)
++..... ...+.+|... .+. +...+ ...++..... .++ ....+ + ...+|++.++.++++
T Consensus 105 l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~rr~~~ 183 (240)
T 3bcv_A 105 MYNVAQKYTCDAVFTGLKRITMAGIPTGTVTHQKEFKLYKNKNEIHTLLKDLIA-SDPYAREERAIQVSAKVVLYRRNLI 183 (240)
T ss_dssp HHHHHHHHTCSEEEC--------------------CEEECSHHHHHHHHGGGTS-SCHHHHHHHHHHHTCSCEEEEHHHH
T ss_pred HHHHHHhcCCCEEEEeeEEEccCCccccccccccccccccCHHHHHHHHHHHhh-cchhhccccccccchhheeeeHHHH
Confidence 7765532 3344443321 111 10000 0011111000 000 00000 0 014578889999999
Q ss_pred HHHHHhccccCCCCCchHHHHHHHh--cCCCeeeCCC
Q 017688 276 SYISINQHVLHKFANEDVSLGSWFI--GLDAEHIDDR 310 (367)
Q Consensus 276 ~~I~~~~~~l~~~~~EDV~vG~~l~--~l~v~~~~~~ 310 (367)
..+-..-..-..+..||+.++.-+. +..+..+++.
T Consensus 184 ~~~g~~f~~~~~~~~eD~~~~~r~~~~g~~i~~~~~~ 220 (240)
T 3bcv_A 184 EKKHLRFVSERILPSEDLIFNVDVLANSNIVCVLPQT 220 (240)
T ss_dssp HHTTCCCCCTTTCTTHHHHHHHHHHTTCSCEEECC--
T ss_pred HHcCCccCCCCCccCCCHHHHHHHHHhCCEEEEECCC
Confidence 8853111111123469999987664 4455555554
No 9
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=71.83 E-value=49 Score=33.41 Aligned_cols=155 Identities=11% Similarity=0.035 Sum_probs=79.2
Q ss_pred CeEEEEEeccCCCCCchhHHHHHHHhhhCCCEEEecccccCCchhHHHHHHHHHHhhcCCccEEEEeCCceeecHHHHHH
Q 017688 136 GIVMRFVIGHSATSGGILDRAIEAEDKKHGDFLRLEHVEGYLELSAKTKIFFATAVALWDADFYVKVDDDVHVNIATLGA 215 (367)
Q Consensus 136 ~v~~~FvlG~s~~~~~~~~~~L~~E~~~~~Dil~ldf~Dsy~nLt~Kt~~~~~wa~~~~~a~fvlKvDDDvfVn~~~L~~ 215 (367)
.+.++.|-..|.+ ...+.+.+-.+.+..+..+. . .|.. .-..+..+.+....+|++..|+|.++..+.|..
T Consensus 404 ~~eiivvdd~S~d---~t~~~~~~~~~~~~~i~~~~-~---~n~G--~~~a~n~g~~~a~g~~i~~ld~D~~~~~~~l~~ 474 (625)
T 2z86_A 404 DLEVCICDDGSTD---DTLRILQEHYANHPRVRFIS-Q---KNKG--IGSASNTAVRLCRGFYIGQLDSDDFLEPDAVEL 474 (625)
T ss_dssp SEEEEEEEESCSS---SHHHHHHHHHTTCTTEEEEE-E---CCCC--HHHHHHHHHHHCCSSEEEECCTTCEECTTHHHH
T ss_pred CeEEEEEECcCCh---hHHHHHHHHHhhCCcEEEEe-C---CCCC--HHHHHHHHHHhcCCCEEEEECCCcccChhHHHH
Confidence 4567777665542 23334444345556665553 2 2222 223445555545789999999999999888887
Q ss_pred HHhhcC--CCCceEEEEec----cCcccccCCCccccccccccCCCCCccCcCcccCcceecHHHHHHHHHhccccCCCC
Q 017688 216 TLARHR--SKPRVYIGCMK----SGPVLAQKGVRYHEPEYWKFGEEGNKYFRHATGQLYAISKDLASYISINQHVLHKFA 289 (367)
Q Consensus 216 ~L~~~~--~~~~ly~G~~~----~~pv~r~~~~K~yvp~~~~~g~~~~~Yp~y~~G~gYvlS~dla~~I~~~~~~l~~~~ 289 (367)
++.... +.-.+..|... .+..+... +..+. +. .......++.|.+.++.+++...+-.-...+ ..
T Consensus 475 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~---~~~~~-~~---~~~~~~~~~~~~~~~~~r~~~~~~ggfd~~~--~~ 545 (625)
T 2z86_A 475 CLDEFRKDLSLACVYTTNRNIDREGNLISNG---YNWPI-YS---REKLTSAMICHHFRMFTARAWNLTEGFNESI--SN 545 (625)
T ss_dssp HHHHHHHCTTCSEEEEEEEEECTTSCEEEEC---CCCSS-CC---HHHHTTSCCCCSCEEEEHHHHTTTTCCCSSC--SS
T ss_pred HHHHHHhCCCeeEEEeeeEEECCCCCEeccC---ccccc-CC---HHHHhhcccCCceEEEEHHHHHHhCCCCCcc--CC
Confidence 776542 22223323221 12111110 11111 00 0011223456788889988765543211222 24
Q ss_pred CchHHHHHHHhcCC-CeeeC
Q 017688 290 NEDVSLGSWFIGLD-AEHID 308 (367)
Q Consensus 290 ~EDV~vG~~l~~l~-v~~~~ 308 (367)
.||.-+..-+...| +.+++
T Consensus 546 ~eD~dl~~r~~~~g~~~~~~ 565 (625)
T 2z86_A 546 AVDYDMYLKLSEVGPFKHIN 565 (625)
T ss_dssp CHHHHHHHHHTTTSCEEEEE
T ss_pred hHHHHHHHHHHHhCCEEEeC
Confidence 69998877765444 33444
No 10
>4hg6_A Cellulose synthase subunit A; membrane translocation, cellulose synthesis, UDP-GLC binding membrane, transferase; HET: BGC UDP LDA; 3.25A {Rhodobacter sphaeroides}
Probab=62.39 E-value=68 Score=34.04 Aligned_cols=126 Identities=12% Similarity=-0.002 Sum_probs=67.9
Q ss_pred HHHHHhhcCCccEEEEeCCceeecHHHHHHHHhhcC--CCCceEEEEec--c-Cccccc--CCCccccccccccCC--C-
Q 017688 186 FFATAVALWDADFYVKVDDDVHVNIATLGATLARHR--SKPRVYIGCMK--S-GPVLAQ--KGVRYHEPEYWKFGE--E- 255 (367)
Q Consensus 186 ~~~wa~~~~~a~fvlKvDDDvfVn~~~L~~~L~~~~--~~~~ly~G~~~--~-~pv~r~--~~~K~yvp~~~~~g~--~- 255 (367)
.+..+.+..+.+|++.+|+|+.+..+.|.+.+.... ++-.+..|... . .+..+. ...++......++.. .
T Consensus 229 alN~gl~~a~gd~Il~lDaD~~~~pd~L~~lv~~~~~dp~v~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (802)
T 4hg6_A 229 NMSAALERLKGELVVVFDADHVPSRDFLARTVGYFVEDPDLFLVQTPHFFINPDPIQRNLALGDRCPPENEMFYGKIHRG 308 (802)
T ss_dssp HHHHHHHHCCCSEEEECCTTEEECTTHHHHHHHHHHHSSSCCEEECCCCBSSCCHHHHHHTCCTTSCCTTHHHHHTHHHH
T ss_pred HHHHHHHhcCCCEEEEECCCCCcChHHHHHHHHHHhcCCCeEEEeccEEEeCCchHhhhhhHHhhhhHHHHHHHHHHHhh
Confidence 456666656889999999999999988888877652 22222222221 1 111000 000000000000000 0
Q ss_pred -CCccCcCcccCcceecHHHHHHHHHhccccCCCCCchHHHHHHHhcC--CCeeeCCCCccc
Q 017688 256 -GNKYFRHATGQLYAISKDLASYISINQHVLHKFANEDVSLGSWFIGL--DAEHIDDRRLCC 314 (367)
Q Consensus 256 -~~~Yp~y~~G~gYvlS~dla~~I~~~~~~l~~~~~EDV~vG~~l~~l--~v~~~~~~~f~~ 314 (367)
...-.+++.|++.++.+++.+.+-.-. .....||..++.-+... .+..+++....+
T Consensus 309 ~~~~~~~~~~G~~~~~Rr~al~~vGgf~---~~~~~ED~~l~~rl~~~G~ri~~~~~~~~~~ 367 (802)
T 4hg6_A 309 LDRWGGAFFCGSAAVLRRRALDEAGGFA---GETITEDAETALEIHSRGWKSLYIDRAMIAG 367 (802)
T ss_dssp HHHTTCCCCCSSSEEEEHHHHHHHTTCC---CSSSSHHHHHHHHHHTTTCCEEECCCCCEEE
T ss_pred HhhcCCceecccchhhhHHHHHHcCCcC---CCCcchHHHHHHHHHHcCCeEEEecCCEEEe
Confidence 000113467999999999999873211 12235999999988644 455565555444
No 11
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=55.19 E-value=17 Score=22.25 Aligned_cols=28 Identities=36% Similarity=0.546 Sum_probs=22.5
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHhh
Q 017688 45 EVSKTHHAIQALDKTISNLEMELAAARA 72 (367)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~le~el~~~~~ 72 (367)
|+..-.|.|..+.|.|+.|+-|+|+.++
T Consensus 3 eiaalkqeiaalkkeiaalkfeiaalkq 30 (33)
T 4dzn_A 3 EIAALKQEIAALKKEIAALKFEIAALKQ 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4555577788899999999999998774
No 12
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=39.57 E-value=36 Score=22.84 Aligned_cols=31 Identities=16% Similarity=0.335 Sum_probs=23.6
Q ss_pred hhhHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhh
Q 017688 39 PAEILGEVSKTHHAIQALDKTISNLEMELAAARA 72 (367)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~le~el~~~~~ 72 (367)
-.|++.+++..|+ +++++|..||..|.+-..
T Consensus 7 mydlvsel~~r~e---~LE~Ri~~LE~KLd~L~~ 37 (43)
T 2pnv_A 7 MYDMISDLNERSE---DFEKRIVTLETKLETLIG 37 (43)
T ss_dssp HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhH---HHHHHHHHHHHHHHHHHH
Confidence 3577878766555 688999999999987654
No 13
>2c0n_A A197; thermophil protein, thermophilic virus, STIV, sulfolobus turreted ICOS virus; 1.86A {Sulfolobus turreted icosahedral virus}
Probab=36.61 E-value=2.3e+02 Score=25.18 Aligned_cols=145 Identities=12% Similarity=0.013 Sum_probs=78.2
Q ss_pred EEEEeccCCCCCchhHHHHHHHhhhCCCEEEecccccCCchhHHHHHHHHHHhhcCCccEEEEeCCc---eeecHHHHHH
Q 017688 139 MRFVIGHSATSGGILDRAIEAEDKKHGDFLRLEHVEGYLELSAKTKIFFATAVALWDADFYVKVDDD---VHVNIATLGA 215 (367)
Q Consensus 139 ~~FvlG~s~~~~~~~~~~L~~E~~~~~Dil~ldf~Dsy~nLt~Kt~~~~~wa~~~~~a~fvlKvDDD---vfVn~~~L~~ 215 (367)
..|++-.-.. ..-.|.....+.|==+++.+.++.-... .-.+.=.|+ +..++++++.+|-| +-.+++.+.+
T Consensus 3 ~~~~~~~~~~----~~l~l~~~l~~~gi~~~l~~~~SlI~ra-RN~lv~~Fl-~~~~~dhllfIDAD~~~I~FdPe~V~r 76 (203)
T 2c0n_A 3 TLFFIPSMGS----VRLPLIDFLVKNDIEYVILSRRNHVAVQ-REIALDMFL-EMKDYDTLAFLDEDVVPIEIDFQKVEA 76 (203)
T ss_dssp EEEEEECSSC----CCHHHHHHHHHTTCCEEEECCCSCHHHH-HHHHHHHHH-HCTTCCEEEEECTTEEEEECCHHHHHH
T ss_pred eEEEeccCCc----eehHHHHHHHhCCCeEEEEccccchHHH-HHHHHHHHH-hcCCCCEEEEEeCCCCccccCHHHHHH
Confidence 4566644332 1234555555555444555543332211 122222233 35689999999999 9999999999
Q ss_pred HHhhcCCCCceEEEEec--cCcccccCCCccccccccccCCCCCccCcCcccCcceecHHHHHHHHHhcc------ccCC
Q 017688 216 TLARHRSKPRVYIGCMK--SGPVLAQKGVRYHEPEYWKFGEEGNKYFRHATGQLYAISKDLASYISINQH------VLHK 287 (367)
Q Consensus 216 ~L~~~~~~~~ly~G~~~--~~pv~r~~~~K~yvp~~~~~g~~~~~Yp~y~~G~gYvlS~dla~~I~~~~~------~l~~ 287 (367)
+|.. ..++.+|.-. +..-. ....+.|.-. +. ..=-.||+.|.-+++|.+...|....- ..+.
T Consensus 77 Ll~~---g~DVV~GsYp~K~~~~~-s~~a~~y~~~---i~---~~~V~d~~tGF~lIkR~V~e~L~~p~fl~~~~~e~~~ 146 (203)
T 2c0n_A 77 KFNE---GYDVVCGYYYLKTLRGY-SVYRKDWEKE---IF---DGEVNGCGLGFTFIKREFLEKIKRPAFLAFKPIESPH 146 (203)
T ss_dssp HHHH---TCSEEEEECBCTTSSSB-SEESSSBCSS---CC---CEECSEECSSEEEEEHHHHTTSCSSCCCC--------
T ss_pred HHhC---CCCEEEEEeeccCCCcc-chHHHHHHHh---cc---CceeeeccccEEEEhHHHHHHHhhhhhhcCChhhhcc
Confidence 9955 3467788742 21100 0001111111 10 112346888999999999998855421 1222
Q ss_pred CCCchHHHHHHH
Q 017688 288 FANEDVSLGSWF 299 (367)
Q Consensus 288 ~~~EDV~vG~~l 299 (367)
.--|||++=.-+
T Consensus 147 ~~gEdv~F~~~~ 158 (203)
T 2c0n_A 147 WIGEDVYFFSTH 158 (203)
T ss_dssp -CCHHHHHHHHH
T ss_pred ccCCceEEEecc
Confidence 334899885544
No 14
>2bo4_A Mannosylglycerate synthase; catalysis, glycosyltransferase, mannose, transferase, stereoselectivity; HET: FLC; 1.95A {Rhodothermus marinus} SCOP: c.68.1.18 PDB: 2bo6_A 2bo7_A* 2bo8_A* 2xw2_A 2y4j_A 2xw3_A* 2xw4_A* 2xw5_A* 2y4k_A* 2y4l_A* 2y4m_A*
Probab=32.43 E-value=1.8e+02 Score=28.14 Aligned_cols=168 Identities=7% Similarity=-0.062 Sum_probs=84.4
Q ss_pred eEEEEEeccCCCCCchhHHHHHHHhh-hCCC-EEEecccc-c--CCchhHHHHHHHHHHhhcCCccEEEEeCCcee-ecH
Q 017688 137 IVMRFVIGHSATSGGILDRAIEAEDK-KHGD-FLRLEHVE-G--YLELSAKTKIFFATAVALWDADFYVKVDDDVH-VNI 210 (367)
Q Consensus 137 v~~~FvlG~s~~~~~~~~~~L~~E~~-~~~D-il~ldf~D-s--y~nLt~Kt~~~~~wa~~~~~a~fvlKvDDDvf-Vn~ 210 (367)
..+++|-+-|.+....+-+.+..+.. .++. ++...... . -.-...=...+|+||....+.++++.+|-|.- .++
T Consensus 29 ~EIIVVDDGStD~T~eia~~la~~~~~~~g~~vi~~~~~r~~~~n~GkG~Al~~G~~~Al~~a~gd~vv~mDADlq~~~P 108 (397)
T 2bo4_A 29 VHEVLCIGYERDQTYEAVERAAPEISRATGTPVSVRLQERLGTLRPGKGDGMNTALRYFLEETQWERIHFYDADITSFGP 108 (397)
T ss_dssp CCEEEEEESSCCHHHHHHHHHHHHHHHHHSCCEEEEECCCCSSSSSSHHHHHHHHHHHHHHHCCCSEEEECCTTCSSCCH
T ss_pred eEEEEEECcCCccHHHHHHHhhhhcccccCCeEEEEecccCCCCCCCHHHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCH
Confidence 45888887765311111122222332 3443 33332220 1 12344456778888873357899999999994 788
Q ss_pred HHHHHHHhhcCCCCceEEEEecc---CcccccCCCccccccccccCCCCCccCcCcccCcceecHHHHHHHHHhc--ccc
Q 017688 211 ATLGATLARHRSKPRVYIGCMKS---GPVLAQKGVRYHEPEYWKFGEEGNKYFRHATGQLYAISKDLASYISINQ--HVL 285 (367)
Q Consensus 211 ~~L~~~L~~~~~~~~ly~G~~~~---~pv~r~~~~K~yvp~~~~~g~~~~~Yp~y~~G~gYvlS~dla~~I~~~~--~~l 285 (367)
.-+..++....+.-++.+|.... +........+..... .+..-.........++.+++++++++.+.... ...
T Consensus 109 ~~i~~Ll~~l~~g~D~V~g~~~r~~~~~~~~~~~~~~ll~~--~~~~~~~~~i~dp~sG~~a~~R~vl~~l~~~~~~~~~ 186 (397)
T 2bo4_A 109 DWITKAEEAADFGYGLVRHYFPRASTDAMITWMITRTGFAL--LWPHTELSWIEQPLGGELLMRREVAAMLYEDERVRRR 186 (397)
T ss_dssp HHHHHHHHHHHTTCSEEEEECCCCTTSCHHHHHTHHHHHHH--HCTTSSGGGCSCTTCCCEEEEHHHHHHHHHCHHHHTC
T ss_pred HHHHHHHHHHHcCCCEEEEEeccccCCcHHHHHHHHHHHHH--HHHHhhccccccCCcccEEEeHHHHHHHhhhcccCcC
Confidence 87777776553334566675321 111100000110000 00000001223345777899999999885421 123
Q ss_pred CCCCCchHHHHHHH--hcCCCeee
Q 017688 286 HKFANEDVSLGSWF--IGLDAEHI 307 (367)
Q Consensus 286 ~~~~~EDV~vG~~l--~~l~v~~~ 307 (367)
..|. .|+.+-..+ .++.|..+
T Consensus 187 ~~fg-~eiel~~~a~~~G~rI~EV 209 (397)
T 2bo4_A 187 SDWG-IDTLYTFVTVQQGVSIYEC 209 (397)
T ss_dssp CSTT-HHHHHHHHHHHTTCCEEEE
T ss_pred CCcc-hHHHHHHHHHHcCCEEEEE
Confidence 3333 366665544 35566544
No 15
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=31.84 E-value=69 Score=24.51 Aligned_cols=71 Identities=30% Similarity=0.355 Sum_probs=44.1
Q ss_pred EECCCCCHHHHHHHHHHhhcCCcccccccccCCeEEEEEeccCCCCCchhHHHHHHHhhhCC---CEEEecccccCCchh
Q 017688 104 INSAFSSRKRRDSVRATWMPQGDKRKKLEEEKGIVMRFVIGHSATSGGILDRAIEAEDKKHG---DFLRLEHVEGYLELS 180 (367)
Q Consensus 104 V~S~p~~~~rR~aIR~TW~~~~~~l~~l~~~~~v~~~FvlG~s~~~~~~~~~~L~~E~~~~~---Dil~ldf~Dsy~nLt 180 (367)
|.|+.++.+-|+.|...=- ...-.++||-|.+.+. -...+.|+++-| |++- .-....||
T Consensus 31 irtatssqdirdiiksmkd-----------ngkplvvfvngasqnd----vnefqneakkegvsydvlk---stdpeelt 92 (112)
T 2lnd_A 31 IRTATSSQDIRDIIKSMKD-----------NGKPLVVFVNGASQND----VNEFQNEAKKEGVSYDVLK---STDPEELT 92 (112)
T ss_dssp EEEECSHHHHHHHHHHHTT-----------CCSCEEEEECSCCHHH----HHHHHHHHHHHTCEEEEEE---CCCHHHHH
T ss_pred eeeccchhhHHHHHHHHHh-----------cCCeEEEEecCccccc----HHHHHHHHHhcCcchhhhc---cCCHHHHH
Confidence 4566777788888765322 1223578999987642 234566666655 3322 22345789
Q ss_pred HHHHHHHHHHhh
Q 017688 181 AKTKIFFATAVA 192 (367)
Q Consensus 181 ~Kt~~~~~wa~~ 192 (367)
..+..+++.+-.
T Consensus 93 qrvreflktags 104 (112)
T 2lnd_A 93 QRVREFLKTAGS 104 (112)
T ss_dssp HHHHHHHHHTTS
T ss_pred HHHHHHHHhccc
Confidence 999999987643
No 16
>1fo8_A Alpha-1,3-mannosyl-glycoprotein beta-1,2-N- acetylglucosaminyltransferase; methylmercury derivative, N- acetylglucosaminyltransferase I; 1.40A {Oryctolagus cuniculus} SCOP: c.68.1.10 PDB: 1fo9_A 1foa_A* 2apc_A* 2am3_A* 2am4_A* 2am5_A*
Probab=31.47 E-value=93 Score=29.70 Aligned_cols=83 Identities=16% Similarity=0.198 Sum_probs=47.2
Q ss_pred HHHHHHhhcCCccEEEEeCCceeecHHHHHH---HHhhcCCCCceEEEEeccCcccccCCCccc----cccccccCCCCC
Q 017688 185 IFFATAVALWDADFYVKVDDDVHVNIATLGA---TLARHRSKPRVYIGCMKSGPVLAQKGVRYH----EPEYWKFGEEGN 257 (367)
Q Consensus 185 ~~~~wa~~~~~a~fvlKvDDDvfVn~~~L~~---~L~~~~~~~~ly~G~~~~~pv~r~~~~K~y----vp~~~~~g~~~~ 257 (367)
.++.++.+..++++++.+|||..+.++-+.- .|..+...++++ |+.+- .+.+.+-. .+...|+
T Consensus 89 ~al~~vf~~~~~~~vIiLEDDl~~spdF~~y~~~~l~~y~~D~~I~--~ISa~---n~~g~~~~~~~~~~~~lyr----- 158 (343)
T 1fo8_A 89 WALGQIFHNFNYPAAVVVEDDLEVAPDFFEYFQATYPLLKADPSLW--CVSAW---NDNGKEQMVDSSKPELLYR----- 158 (343)
T ss_dssp HHHHHHHTTSCCSEEEEEETTEEECTTHHHHHHHHHHHHHHCTTEE--EEESC---CTTCBGGGSCTTCTTCEEE-----
T ss_pred HHHHHHHHhccCCEEEEEcCCCeECHHHHHHHHHHHHHhhcCCcEE--EEecc---cCccccccccccCcceEEe-----
Confidence 4555555544799999999999999866533 333334456665 33210 00110111 1222222
Q ss_pred ccCcCcccCcceecHHHHHHHH
Q 017688 258 KYFRHATGQLYAISKDLASYIS 279 (367)
Q Consensus 258 ~Yp~y~~G~gYvlS~dla~~I~ 279 (367)
-.|..|-|+++++++-+.+-
T Consensus 159 --s~~f~~wGWa~wr~~W~e~~ 178 (343)
T 1fo8_A 159 --TDFFPGLGWLLLAELWAELE 178 (343)
T ss_dssp --ESSCCCSSEEEEHHHHHHHG
T ss_pred --ecCCCchhhhhcHHHHHHHh
Confidence 22456889999999987654
No 17
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=29.60 E-value=83 Score=19.27 Aligned_cols=26 Identities=23% Similarity=0.368 Sum_probs=20.0
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHH
Q 017688 44 GEVSKTHHAIQALDKTISNLEMELAA 69 (367)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~le~el~~ 69 (367)
+++-+-+-.+|.+++++..||.-..+
T Consensus 6 e~~r~l~~ivq~lq~r~drle~tvqa 31 (32)
T 2akf_A 6 EDVRNLNAIVQKLQERLDRLEETVQA 31 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45666677889999999999976543
No 18
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=24.47 E-value=96 Score=21.40 Aligned_cols=24 Identities=29% Similarity=0.397 Sum_probs=19.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhh
Q 017688 49 THHAIQALDKTISNLEMELAAARA 72 (367)
Q Consensus 49 ~~~~~~~~~~~~~~le~el~~~~~ 72 (367)
...-++.|.|+|..||.+|..++.
T Consensus 10 AERsV~KLek~ID~LEdeL~~eKe 33 (52)
T 2z5i_A 10 LENEVARLKKLVDDLEDELYAQKL 33 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHH
Confidence 345677899999999999998865
No 19
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=23.56 E-value=1.1e+02 Score=20.39 Aligned_cols=26 Identities=27% Similarity=0.341 Sum_probs=20.9
Q ss_pred hHHHhhhhhhHHHHHHHHHHHHHHHH
Q 017688 41 EILGEVSKTHHAIQALDKTISNLEME 66 (367)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~le~e 66 (367)
.|-.|+.+|.+-|..+++++..||..
T Consensus 13 kVdrEI~Kte~kI~~lqkKlkeLee~ 38 (42)
T 2l5g_B 13 RVDREITMVEQQISKLKKKQQQLEEE 38 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45567888999999999998888754
No 20
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=23.03 E-value=1.1e+02 Score=20.13 Aligned_cols=22 Identities=32% Similarity=0.462 Sum_probs=14.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH
Q 017688 49 THHAIQALDKTISNLEMELAAA 70 (367)
Q Consensus 49 ~~~~~~~~~~~~~~le~el~~~ 70 (367)
-...+|.++|+++.|+..|.+-
T Consensus 25 leselqalekklaalksklqal 46 (48)
T 1g6u_A 25 LESELQALEKKLAALKSKLQAL 46 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3445667777777777776653
No 21
>3r4h_A Coiled coil helix CC-TET-PHI22; coiled coil domain, tetramer, KIH interactions, synthetic BI NOVO protein; HET: PHI; 2.70A {Synthetic}
Probab=22.73 E-value=1.1e+02 Score=18.75 Aligned_cols=28 Identities=25% Similarity=0.501 Sum_probs=19.7
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHhh
Q 017688 45 EVSKTHHAIQALDKTISNLEMELAAARA 72 (367)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~le~el~~~~~ 72 (367)
|+....|.+..+.|.++.++-|||+-++
T Consensus 3 elaaikqelaaikkelaaikfelaaikq 30 (34)
T 3r4h_A 3 ELAAIKQELAAIKKELAAIKFELAAIKQ 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4444455556778888888888887764
Done!