Query 017689
Match_columns 367
No_of_seqs 186 out of 480
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 02:35:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017689.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017689hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02902 pantothenate kinase 100.0 1E-83 2.3E-88 677.6 30.6 351 4-366 494-875 (876)
2 KOG4584 Uncharacterized conser 100.0 4E-80 8.7E-85 578.9 25.4 341 20-360 5-348 (348)
3 COG1578 Uncharacterized conser 100.0 2.1E-62 4.5E-67 455.5 25.5 277 46-362 1-284 (285)
4 PF01937 DUF89: Protein of unk 100.0 2.9E-54 6.4E-59 427.8 19.5 302 48-358 1-354 (355)
5 KOG3870 Uncharacterized conser 100.0 6.6E-36 1.4E-40 290.7 15.6 245 99-349 119-403 (434)
6 COG1737 RpiR Transcriptional r 76.5 69 0.0015 30.8 13.4 122 118-250 91-213 (281)
7 PF13500 AAA_26: AAA domain; P 61.1 6.5 0.00014 35.4 2.5 115 221-354 11-131 (199)
8 PRK11557 putative DNA-binding 61.0 1.5E+02 0.0033 28.0 13.0 95 150-250 116-211 (278)
9 cd01080 NAD_bind_m-THF_DH_Cycl 59.3 34 0.00073 30.6 6.7 34 212-250 44-77 (168)
10 TIGR03006 pepcterm_polyde poly 45.1 1.5E+02 0.0033 28.4 9.2 103 199-313 29-132 (265)
11 PF07592 DDE_Tnp_ISAZ013: Rhod 43.5 25 0.00054 34.8 3.5 53 194-247 161-220 (311)
12 PF03205 MobB: Molybdopterin g 42.5 1.2E+02 0.0025 26.1 7.2 87 220-322 9-102 (140)
13 COG0132 BioD Dethiobiotin synt 42.2 65 0.0014 30.4 5.9 97 221-323 13-118 (223)
14 PRK14494 putative molybdopteri 41.9 1.5E+02 0.0033 27.9 8.4 94 214-323 2-97 (229)
15 PF03033 Glyco_transf_28: Glyc 38.0 53 0.0011 27.1 4.3 34 216-250 2-35 (139)
16 PF08328 ASL_C: Adenylosuccina 36.9 41 0.0009 28.4 3.3 27 102-128 54-80 (115)
17 PF06838 Met_gamma_lyase: Meth 36.8 14 0.00031 37.4 0.6 120 102-222 54-198 (403)
18 cd06167 LabA_like LabA_like pr 35.1 1E+02 0.0023 25.9 5.8 33 212-250 100-132 (149)
19 cd03116 MobB Molybdenum is an 34.4 2.1E+02 0.0046 25.2 7.7 89 220-323 10-104 (159)
20 PF01210 NAD_Gly3P_dh_N: NAD-d 33.2 44 0.00096 29.0 3.2 26 222-251 7-32 (157)
21 CHL00073 chlN photochlorophyll 33.0 2E+02 0.0043 30.1 8.3 46 198-254 303-348 (457)
22 PRK12374 putative dithiobiotin 31.9 1.5E+02 0.0034 27.3 6.8 93 221-323 13-117 (231)
23 COG4536 CorB Putative Mg2+ and 30.8 40 0.00086 34.3 2.7 99 113-231 214-314 (423)
24 PRK09570 rpoH DNA-directed RNA 30.1 31 0.00068 27.2 1.5 23 341-363 40-62 (79)
25 PRK14175 bifunctional 5,10-met 30.1 1.4E+02 0.003 29.3 6.2 34 212-250 158-191 (286)
26 TIGR00176 mobB molybdopterin-g 29.9 2.8E+02 0.0062 24.1 7.7 29 220-250 8-36 (155)
27 PRK00784 cobyric acid synthase 29.6 2.6E+02 0.0055 29.2 8.6 107 214-323 4-137 (488)
28 PRK12829 short chain dehydroge 29.3 1.2E+02 0.0026 27.7 5.5 35 212-251 11-45 (264)
29 PF01191 RNA_pol_Rpb5_C: RNA p 28.9 35 0.00076 26.6 1.6 23 341-363 37-59 (74)
30 PF05226 CHASE2: CHASE2 domain 27.3 1.8E+02 0.0038 28.0 6.5 65 184-249 50-117 (310)
31 PRK06924 short chain dehydroge 27.1 4.7E+02 0.01 23.6 9.9 33 214-251 3-35 (251)
32 PF00070 Pyr_redox: Pyridine n 26.9 1.9E+02 0.0042 21.6 5.5 41 228-270 10-51 (80)
33 PRK07231 fabG 3-ketoacyl-(acyl 26.5 1.1E+02 0.0024 27.6 4.8 34 213-251 6-39 (251)
34 PRK13512 coenzyme A disulfide 26.3 1.9E+02 0.0041 29.4 6.9 51 198-254 134-184 (438)
35 PRK05653 fabG 3-ketoacyl-(acyl 26.2 1.1E+02 0.0023 27.4 4.6 34 213-251 6-39 (246)
36 PF13460 NAD_binding_10: NADH( 25.6 1.2E+02 0.0027 26.1 4.7 32 217-252 2-33 (183)
37 KOG1201 Hydroxysteroid 17-beta 25.4 4.9E+02 0.011 25.7 9.0 85 214-309 39-141 (300)
38 PRK06138 short chain dehydroge 24.5 1.1E+02 0.0023 27.8 4.2 34 213-251 6-39 (252)
39 PRK09564 coenzyme A disulfide 24.4 2.9E+02 0.0062 27.9 7.8 61 201-267 138-198 (444)
40 COG0062 Uncharacterized conser 24.4 1.9E+02 0.0041 26.8 5.8 42 212-258 49-95 (203)
41 PRK07326 short chain dehydroge 24.3 1.2E+02 0.0027 27.2 4.6 34 214-251 7-40 (237)
42 PF02093 Gag_p30: Gag P30 core 24.3 24 0.00052 32.9 -0.1 95 43-158 102-201 (211)
43 PRK12938 acetyacetyl-CoA reduc 23.8 1.6E+02 0.0034 26.7 5.2 32 214-249 4-35 (246)
44 PRK05854 short chain dehydroge 23.8 1.3E+02 0.0027 29.1 4.8 35 212-251 14-48 (313)
45 PRK09754 phenylpropionate diox 23.7 2.2E+02 0.0048 28.4 6.7 58 198-263 132-189 (396)
46 PRK08213 gluconate 5-dehydroge 23.4 1.1E+02 0.0024 28.0 4.2 36 212-252 12-47 (259)
47 KOG3218 RNA polymerase, 25-kDa 23.2 44 0.00094 30.9 1.3 21 342-362 172-192 (208)
48 PF01936 NYN: NYN domain; Int 23.1 73 0.0016 26.5 2.7 41 213-264 97-137 (146)
49 PLN03050 pyridoxine (pyridoxam 23.1 2.1E+02 0.0046 27.1 6.0 32 213-248 61-94 (246)
50 PRK07577 short chain dehydroge 23.0 1.5E+02 0.0033 26.5 4.9 34 213-251 4-37 (234)
51 cd07187 YvcK_like family of mo 22.9 1.2E+02 0.0026 29.9 4.5 24 299-323 163-186 (308)
52 PRK07454 short chain dehydroge 22.8 1.5E+02 0.0033 26.8 4.9 34 213-251 7-40 (241)
53 cd03784 GT1_Gtf_like This fami 21.9 1.4E+02 0.0031 29.4 4.8 36 214-250 2-37 (401)
54 COG0698 RpiB Ribose 5-phosphat 21.5 1.2E+02 0.0026 26.9 3.7 31 214-247 2-32 (151)
55 PRK08628 short chain dehydroge 21.0 1.4E+02 0.003 27.3 4.3 35 213-252 8-42 (258)
56 PF11576 DUF3236: Protein of u 20.6 76 0.0017 27.9 2.2 26 298-323 78-104 (154)
57 PRK04965 NADH:flavorubredoxin 20.6 2.9E+02 0.0063 27.3 6.7 47 212-264 141-187 (377)
58 KOG0725 Reductases with broad 20.1 6.6E+02 0.014 24.0 8.9 86 214-309 9-117 (270)
59 COG2012 RPB5 DNA-directed RNA 20.0 1E+02 0.0022 24.4 2.5 21 343-363 45-65 (80)
No 1
>PLN02902 pantothenate kinase
Probab=100.00 E-value=1e-83 Score=677.60 Aligned_cols=351 Identities=40% Similarity=0.684 Sum_probs=320.8
Q ss_pred CCCCcCCCCCCCCCCCCCCCCcccCCCCCCCCCCCccccccccccccccHHHHHHHHhcC-CCCCCHHHHHHHHHHHHHH
Q 017689 4 ESELVPFPLLPTPIETNYRACTIPYRFPTDNPKKPTRTEIAWLDLFLNSIPSFKKRAESD-PTVPDAHVRAEKFAQRYSE 82 (367)
Q Consensus 4 ~~~~~~~p~l~~~~~~~y~p~~~~~~~~~~~~~~~~~~~~~wm~~~~~ci~c~~~~a~~~-~~~~~~~~~~~~~~~~~~~ 82 (367)
.+++++||||.||. +|.|||+||. +.++|. ||++||.+++|.|+++|... ..++|+.+|+++|+++|.+
T Consensus 494 ~~~l~~~pLL~~~~--~Y~p~t~d~~--d~~~r~------yW~~~f~~~i~~~~~~A~~sq~~~~da~~ra~~F~~~y~~ 563 (876)
T PLN02902 494 VPTLEVFPLLADPK--TYEPNTIDLS--DQSERE------YWFKVLSEHLPDLVDKAVASEGGTDDAKRRGDAFARAFSA 563 (876)
T ss_pred ccccccccccCCCC--CCCCCcccCC--ccHHHH------HHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHH
Confidence 46799999999998 9999999994 222554 99999999999999999754 5778999999999999999
Q ss_pred HHHHhhcCCCCCCCchHHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhh
Q 017689 83 ILEDMKKDPETHGGPPDCILLCRLREQVLRELGFRDIFKKVKDEENAKAISLFGDVVRLNDVIEDEGKRVESLIRGIFAG 162 (367)
Q Consensus 83 ~l~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~DPy~~~K~~~n~~Al~~~~~l~~~ld~~~~~~~~l~~~l~~alaG 162 (367)
+|.+++++|.+||+++ ++.+.++++.+++.+|+.|||+++|+++|+.|++++|.+++++++++ .+++|.+++|++++|
T Consensus 564 ~L~~l~~~p~a~G~~~-~~~Ll~~rE~~Lre~Gf~DPY~~vK~~eN~~AL~llp~l~~~ld~~~-~edrL~~aVk~aiAG 641 (876)
T PLN02902 564 HLARLMEEPAAYGKLG-LANLLELREECLREFHFVDAYRSIKQRENEASLAVLPDLLAELDSMT-EETRLLTLIEGVLAA 641 (876)
T ss_pred HHHHHHhCccccCCch-HHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHhcCC-cchHHHHHHHHHHHH
Confidence 9999999999999987 58999999999999999999999999999999999999999998766 468999999999999
Q ss_pred hhhcccchhhhhhhccc-CCCHHHHHhhhCCCCcccCCHHHHHHHhcc------CCCCeEEEEecCCChhhhhchHHHHH
Q 017689 163 NIFDLGSAQLAEVFSKD-GMSFLASCQNLVPRPWVIDDLETFKVKWSK------KAWKKAVIFVDNSGADIILGILPFAR 235 (367)
Q Consensus 163 N~~D~g~~~~~~~~~~~-~~~~~~~l~~~~~~~~~vdd~~~~~~~L~~------~~~~~il~~~DNaGeeiv~D~lpLa~ 235 (367)
|+||||+++.+++++.+ .+++++.+++++++||.+||++.|+++|.+ .++|+++||+||||+|||||++||||
T Consensus 642 NifD~Ga~~~v~l~~~~~~~~~~~~~~~~~~rpw~iDD~d~f~erL~~~~~~~~~~~KkvLyf~DNAGaEIVLD~LpLiR 721 (876)
T PLN02902 642 NIFDWGSRACVELYHKGTIIEIYRMSRNKMQRPWRVDDFDAFKERMLGSGGKKPKPHKRALLFVDNSGADVVLGMLPLAR 721 (876)
T ss_pred hhhhhhhhhhhhhccccchhhHHHHHHHhhcCCCccCCHHHHHHHHhhcccccCCCccEEEEEecCCCCceecChHHHHH
Confidence 99999998777666544 357888899999999999999999999974 36899999999999779999999999
Q ss_pred HHHhCCCEEEEEecCCcceecCChHHHHHHHHHHhhhhhhhc-----c---------ccc--------cceEecccCCCc
Q 017689 236 ELLRRGTQVILAANDLPSINDVTYPELIEIMSKLKDEKGQLM-----G---------VDT--------SKLLIANSGNDL 293 (367)
Q Consensus 236 ~L~~~g~~V~l~vk~~P~lNDvT~~D~~~~l~~~~~~d~~l~-----g---------l~~--------~~~~vi~sG~~~ 293 (367)
+|+++|++|+++||+.|+|||||++|+..+++.++..|+.+. | +++ ++++|++||+.+
T Consensus 722 ELl~rgtkV~lavng~PiINDvT~eDl~~~~~~~a~~~~~l~~A~~aG~~~~~~~~~ld~~~~~~~~~~~l~VV~SG~~s 801 (876)
T PLN02902 722 ELLRRGTEVVLVANSLPALNDVTAMELPDIVAEAAKHCDILRRAAEAGGLLVDAMVNTDDGSKDDSTSVPLMVVENGCGS 801 (876)
T ss_pred HHHHcCCEEEEEECCCCchhhhhHHHHHHHHHHHhhcccHHHHHHHhcccccccccccccccccccccceEEEEcCCCCC
Confidence 999999999999999999999999999999999887765542 2 332 468999999999
Q ss_pred cCcccccccHHHHHHhccCcEEEEecCCCCCCcccccccccccccccccCCHHHHHHh-CCCcCCeEEEeccCC
Q 017689 294 PVIDLTAVSQELAYLASDADLVILEGMGRGIETNLYAQFKCDSLKIGMVKHPEVAQFL-GGRLYDCVFKYNEVS 366 (367)
Q Consensus 294 pg~~l~~~s~el~~~l~~aDLII~KGmgNye~~~i~~~f~c~~lkl~~~Kc~~vA~~l-g~~~~~~V~~~~~~~ 366 (367)
||++|+++|+||++++++|||||+|||||.+|||+++.|+||+|||||||++|+|++| ||++|||||+|+++.
T Consensus 802 PGidL~rvS~E~~~a~~~ADLIIaKGMGRaihTN~~a~f~cd~LklamiK~~~lA~~L~gG~~ydcV~k~e~~~ 875 (876)
T PLN02902 802 PCIDLRQVSSELAAAAKDADLIVLEGMGRALHTNFNARFKCEALKLAMVKNQRLAEKLINGNIYDCVCRYEPAS 875 (876)
T ss_pred CCcChHHCCHHHHHHhcCCCEEEEcCcccccccccccceecchhHHhHhccHHHHhhccCCceEEEEEecccCC
Confidence 9999999999999999999999999999999999999999999999999999999999 999999999999875
No 2
>KOG4584 consensus Uncharacterized conserved protein [General function prediction only]
Probab=100.00 E-value=4e-80 Score=578.89 Aligned_cols=341 Identities=63% Similarity=1.008 Sum_probs=316.7
Q ss_pred CCCCCcccCCCCCCCCCCCccccccccccccccHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHHHHHhhcCCCCCCCch
Q 017689 20 NYRACTIPYRFPTDNPKKPTRTEIAWLDLFLNSIPSFKKRAESDP-TVPDAHVRAEKFAQRYSEILEDMKKDPETHGGPP 98 (367)
Q Consensus 20 ~y~p~~~~~~~~~~~~~~~~~~~~~wm~~~~~ci~c~~~~a~~~~-~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~ 98 (367)
+|.+||++|.+++++.+..+|++.||++||.+.||.|.++|+++. .++|+..|+++|+++|.++|..++++|.+||.||
T Consensus 5 ~~~~~~~~y~p~t~d~~k~~~a~~~Wi~~f~~~ip~f~krA~asq~~~~DA~~RAe~F~~~y~~~Le~lk~~P~a~G~~~ 84 (348)
T KOG4584|consen 5 NYRACTIPYRFPTDDLNKDTPAEIYWINVFSNSIPSFKKRAEASQENVPDAPARAEKFAQRYAGILEDLKKDPEAYGGPP 84 (348)
T ss_pred ccccCCCCCCCCCCCccccchhhhHHHHHHHHHhHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHhChHhcCCCc
Confidence 344444444444444445688889999999999999999998766 6899999999999999999999999999999888
Q ss_pred HHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhhhhhcccchhhhhhhcc
Q 017689 99 DCILLCRLREQVLRELGFRDIFKKVKDEENAKAISLFGDVVRLNDVIEDEGKRVESLIRGIFAGNIFDLGSAQLAEVFSK 178 (367)
Q Consensus 99 ~~~~~~~i~~~~~~~~g~~DPy~~~K~~~n~~Al~~~~~l~~~ld~~~~~~~~l~~~l~~alaGN~~D~g~~~~~~~~~~ 178 (367)
-++.+.+++|++++++||.|||+++|+++|..|++.+|.+.+.+|++++.+.+++.++|+.+|||+||||+.+...+++.
T Consensus 85 ~g~~Ll~lRE~~LrE~gF~Diy~kvK~~ENa~Aia~fP~vv~~lDal~dE~~Rle~LvrGilAGNiFDwGa~~~~~il~~ 164 (348)
T KOG4584|consen 85 LGINLLRLREQILRELGFRDIYKKVKDEENAKAIALFPQVVRLLDALEDEGTRLENLVRGILAGNIFDWGAKAVVKILES 164 (348)
T ss_pred chHHHHHHHHHHHHHhCCccHHHHHHHhhhhhHHHHhHHHHHHHhhhcchhHHHHHHHHHHHhcchhhhHHHHHHHHHhc
Confidence 77789999999999999999999999999999999999999999999987789999999999999999999998888875
Q ss_pred c-CCCHHHHHhhhCCCCcccCCHHHHHHHhccCCCCeEEEEecCCChhhhhchHHHHHHHHhCCCEEEEEecCCcceecC
Q 017689 179 D-GMSFLASCQNLVPRPWVIDDLETFKVKWSKKAWKKAVIFVDNSGADIILGILPFARELLRRGTQVILAANDLPSINDV 257 (367)
Q Consensus 179 ~-~~~~~~~l~~~~~~~~~vdd~~~~~~~L~~~~~~~il~~~DNaGeeiv~D~lpLa~~L~~~g~~V~l~vk~~P~lNDv 257 (367)
+ .++|..+++++.+|||++||++.|.+++.+.|||++++|+||||.||+++++||+|+|+++|++|++++++.|.+|||
T Consensus 165 ~~~f~f~~a~~~l~~RPWl~D~ld~f~~r~~~~p~K~~lif~DNSG~DvILGilPf~Rellr~gt~vil~ans~palNdv 244 (348)
T KOG4584|consen 165 ASVFGFLAALQNLESRPWLVDDLDSFLARLKGKPHKCALIFVDNSGFDVILGILPFARELLRRGTEVILCANSSPALNDV 244 (348)
T ss_pred cccchHHHHHhhhhcCCeeeccHHHHHHHhcCCCcceEEEEecCCCcceeeeecHHHHHHHhCCCeEEEEecCcchhccc
Confidence 5 478999999999999999999999999998899999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHhhhhhh-hccccccceEecccCCCccCcccccccHHHHHHhccCcEEEEecCCCCCCccccccccccc
Q 017689 258 TYPELIEIMSKLKDEKGQ-LMGVDTSKLLIANSGNDLPVIDLTAVSQELAYLASDADLVILEGMGRGIETNLYAQFKCDS 336 (367)
Q Consensus 258 T~~D~~~~l~~~~~~d~~-l~gl~~~~~~vi~sG~~~pg~~l~~~s~el~~~l~~aDLII~KGmgNye~~~i~~~f~c~~ 336 (367)
|..++..++..++.+|.. ..+++.+.+.++.||+.+||+||+++|+|++.+.++|||||++|||+..|||+++.|+|+|
T Consensus 245 t~~el~~l~~~~~~~~~~l~~~~~~~~ll~~~~G~~~pciDlrrvsqeLa~l~~daDLVViEGMGRalhTN~~aqf~CeS 324 (348)
T KOG4584|consen 245 TYSELKELAAELANDCNVLLKAIDTGQLLVVQNGQDSPCIDLRRVSQELAYLSSDADLVVIEGMGRALHTNLNAQFKCES 324 (348)
T ss_pred cHHHHHHHHHhhccCChHHHHHhhhcceEEeecCCCCceeeHHhhhHHHHHHhcCCCEEEEeccchhhhhhhhhhhcccH
Confidence 999999999999987665 4468888899999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCHHHHHHhCCCcCCeEE
Q 017689 337 LKIGMVKHPEVAQFLGGRLYDCVF 360 (367)
Q Consensus 337 lkl~~~Kc~~vA~~lg~~~~~~V~ 360 (367)
||++|+|+.|+|++||+++|++||
T Consensus 325 LK~avik~~wlA~~LGgrlf~vVf 348 (348)
T KOG4584|consen 325 LKLAVIKNLWLAERLGGRLFSVVF 348 (348)
T ss_pred hHHHHHhhHHHHHHhCCchheecC
Confidence 999999999999999999999996
No 3
>COG1578 Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=2.1e-62 Score=455.48 Aligned_cols=277 Identities=21% Similarity=0.276 Sum_probs=245.1
Q ss_pred cccccccHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHHHHHhhcCCCCCCCchHHHHHHHHHHHHHHHcCCCcchHHHH
Q 017689 46 LDLFLNSIPSFKKRAESDP-TVPDAHVRAEKFAQRYSEILEDMKKDPETHGGPPDCILLCRLREQVLRELGFRDIFKKVK 124 (367)
Q Consensus 46 m~~~~~ci~c~~~~a~~~~-~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~DPy~~~K 124 (367)
|+..++|.+|+++|+..+. ..++++++..+.+....+.|.+.. .....|+ +...++|+.+++++|++|||++.|
T Consensus 1 mk~~p~C~~C~l~q~~~~~~~~t~ded~~~~~~~~~~~lls~~y---~~~~~~a--~~~t~ihr~v~k~~g~eDPyke~K 75 (285)
T COG1578 1 MKASPECLPCLLRQAVNAVKLATDDEDLRSRIMSEALKLLSEEY---GESAVPA--IAGTLIHREVYKILGNEDPYKEYK 75 (285)
T ss_pred CCCcccchHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhh---CcCCCcH--HHHHHHHHHHHHHcCCCCcHHHHH
Confidence 7899999999999998777 556666666655666655555543 2223334 489999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhhhhhcccchhhhhhhcccCCCHHHHHhhhCCCCcccCCHHHHH
Q 017689 125 DEENAKAISLFGDVVRLNDVIEDEGKRVESLIRGIFAGNIFDLGSAQLAEVFSKDGMSFLASCQNLVPRPWVIDDLETFK 204 (367)
Q Consensus 125 ~~~n~~Al~~~~~l~~~ld~~~~~~~~l~~~l~~alaGN~~D~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~vdd~~~~~ 204 (367)
+++|+.|++++|.+++.+ ++..++|.+++++|++||+||||+.+.. .+++++.+.++++.++.+||++.|.
T Consensus 76 ~r~NeiA~~vl~~vr~~~---~~~~~dl~~Avk~ai~GN~iDfgv~G~~------~~~lee~~~~~~~~~l~i~d~~k~~ 146 (285)
T COG1578 76 RRANEIALKVLPKVRENI---EDTPEDLKTAVKLAIVGNVIDFGVLGFS------PFDLEEEVEKLLDAELYIDDSPKLL 146 (285)
T ss_pred HHHHHHHHHHHHHHHhcc---cCChHHHHHHHHHHHHhcceeeccccCC------HhHHHHHHHHhhcCcccccchHHHH
Confidence 999999999999999844 4445789999999999999999998731 3689999999999999999999999
Q ss_pred HHhccCCCCeEEEEecCCChhhhhchHHHHHHHHhCCCEEEEEecCCcceecCChHHHHHHHHHHhhhhhhhccccccce
Q 017689 205 VKWSKKAWKKAVIFVDNSGADIILGILPFARELLRRGTQVILAANDLPSINDVTYPELIEIMSKLKDEKGQLMGVDTSKL 284 (367)
Q Consensus 205 ~~L~~~~~~~il~~~DNaGeeiv~D~lpLa~~L~~~g~~V~l~vk~~P~lNDvT~~D~~~~l~~~~~~d~~l~gl~~~~~ 284 (367)
+.|++ + +|+|++||||| |+||++ |++.+.++|.+|+++||++|++||||++|+... |+++ ..
T Consensus 147 ~~l~~--a-~VlYl~DNaGE-i~FD~v-lie~ik~~~~~vv~vVrg~PIlnDaT~EDak~~------------~i~~-i~ 208 (285)
T COG1578 147 ELLKN--A-SVLYLTDNAGE-IVFDKV-LIEVIKELGKKVVVVVRGGPILNDATMEDAKEA------------GIDE-IA 208 (285)
T ss_pred HHhcc--C-cEEEEecCCcc-HHHHHH-HHHHHHhcCCceEEEEcCCceechhhHHHHHHc------------Ccch-hh
Confidence 99975 3 99999999998 999998 999999999999999999999999999999885 8887 66
Q ss_pred EecccCCCccCcccccccHHHHHHhccCcEEEEecCCCCC------CcccccccccccccccccCCHHHHHHhCCCcCCe
Q 017689 285 LIANSGNDLPVIDLTAVSQELAYLASDADLVILEGMGRGI------ETNLYAQFKCDSLKIGMVKHPEVAQFLGGRLYDC 358 (367)
Q Consensus 285 ~vi~sG~~~pg~~l~~~s~el~~~l~~aDLII~KGmgNye------~~~i~~~f~c~~lkl~~~Kc~~vA~~lg~~~~~~ 358 (367)
+||+||++.+|+.++.+|.||+++|.+|||||+||||||| ..++||+| ++||++||+.+||++|+.
T Consensus 209 ~vittG~~~vGi~l~d~s~Ef~~~f~~adlIIaKG~gNfE~LsE~~~~piffLL--------~AKC~~VAr~lgV~~G~~ 280 (285)
T COG1578 209 KVITTGSDIVGIWLEDVSEEFREAFESADLIIAKGQGNFETLSEEEDKPIFFLL--------KAKCDPVARELGVPRGAN 280 (285)
T ss_pred eeecCCCCcceeeHHhccHHHHHHhccCCEEEecCccccccccccCCCcEEeee--------cccCchHHHHhCCCCCCe
Confidence 9999999999999999999999999999999999999997 36999977 799999999999999999
Q ss_pred EEEe
Q 017689 359 VFKY 362 (367)
Q Consensus 359 V~~~ 362 (367)
||+.
T Consensus 281 V~~~ 284 (285)
T COG1578 281 VAKR 284 (285)
T ss_pred eeec
Confidence 9985
No 4
>PF01937 DUF89: Protein of unknown function DUF89; InterPro: IPR002791 This entry contains uncharacterised proteins. Those with structural information consist of two domains: an all-alpha domain with a 3-helical bundle fold, and an alpha-beta domain in 3 layers, alpha/beta/alpha. ; PDB: 2FFJ_B 1XFI_A 2Q40_A 2G8L_B 3PT1_A.
Probab=100.00 E-value=2.9e-54 Score=427.75 Aligned_cols=302 Identities=25% Similarity=0.315 Sum_probs=226.9
Q ss_pred cccccHHHHHHHHhcCC--CCCCHHHHHHHHHHHHHHHHHHhhcCCCCCCCchH-------------------HHHHHHH
Q 017689 48 LFLNSIPSFKKRAESDP--TVPDAHVRAEKFAQRYSEILEDMKKDPETHGGPPD-------------------CILLCRL 106 (367)
Q Consensus 48 ~~~~ci~c~~~~a~~~~--~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~-------------------~~~~~~i 106 (367)
++.+|+||+++|+.... ..++.++..+++.+.+.+.+.++..+ ++++. .+..+.+
T Consensus 1 T~~~c~p~il~~~i~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~w~~~pWL~~e~yl 76 (355)
T PF01937_consen 1 TFRECLPCILTQAIDSLRRANDDAEEDIKEIIEELSKLRYELDTN----KPLPPITDDGPDSEEGPTWFNAPWLFAECYL 76 (355)
T ss_dssp HHHTHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHT----TCGHHH-HHHHHHSTT-BTTBSBHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHhhcC----CCCCccccccccccccccccccchHHHHHHH
Confidence 35799999999998655 33444666777777777777776643 33333 1237777
Q ss_pred HHHHHHHcC------CCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhhhhhcccchhhhhhhcccC
Q 017689 107 REQVLRELG------FRDIFKKVKDEENAKAISLFGDVVRLNDVIEDEGKRVESLIRGIFAGNIFDLGSAQLAEVFSKDG 180 (367)
Q Consensus 107 ~~~~~~~~g------~~DPy~~~K~~~n~~Al~~~~~l~~~ld~~~~~~~~l~~~l~~alaGN~~D~g~~~~~~~~~~~~ 180 (367)
|+++.+.+| +.|||+++|+++|+.|++.++.+.+.++++++..++|.+++++|+|||++|||+....+.. .
T Consensus 77 yr~i~~~~~~~~~~~~~DPf~~~K~~~~~~al~~~~~l~~~l~~~~~~~~~~~~~l~~al~GN~~Dls~~~~~~~~---~ 153 (355)
T PF01937_consen 77 YRRILEIFGYSSYLKNYDPFAEQKQESNEIALKLIPELAERLESLPDPRERFREALKLALWGNIIDLSLSPGHEVG---E 153 (355)
T ss_dssp HHHHHHHHTHSTTTTTS-TTHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHCG--CCCHTSHHCH---H
T ss_pred HHHHHHhcccccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHhcCcccCccccchhc---c
Confidence 888888888 9999999999999999999999999998877655679999999999999999998721111 1
Q ss_pred CCHHHHHhhhCCCCcccCCHHHHHHHhccCCCCeEEEEecCCChhhhhchHHHHHHHHh--CCCEEEEEecCCc-ceecC
Q 017689 181 MSFLASCQNLVPRPWVIDDLETFKVKWSKKAWKKAVIFVDNSGADIILGILPFARELLR--RGTQVILAANDLP-SINDV 257 (367)
Q Consensus 181 ~~~~~~l~~~~~~~~~vdd~~~~~~~L~~~~~~~il~~~DNaGeeiv~D~lpLa~~L~~--~g~~V~l~vk~~P-~lNDv 257 (367)
.+....+.+..+++|++||++++++.|...++++|+||+||||.|+|+|++ ||++|++ +|.+|++|||++| ++|||
T Consensus 154 ~~~~~~~~~~~~~~~l~dd~~~~~~~l~~~~~~~v~~v~DNaG~Elv~D~l-l~~~L~~~~~~~~V~~~vK~~P~~vnDv 232 (355)
T PF01937_consen 154 FDQEEEIEKALEKPILVDDSDEFWEKLENKKAKRVDIVLDNAGFELVFDLL-LAEFLLESGPGSKVVFHVKGIPWFVNDV 232 (355)
T ss_dssp HHHHHHHHHHHHSTESEE-HHHHHHHHCTCHTSEEEEE--BTTHHHHHHHH-HHHHHHHTCTTSEEEEEEBSS--TTTB-
T ss_pred cchHHHHHHhhhcCCccccHHHHHHHhhccCCCEEEEEEcCCCcHHHhhHH-HHHHHHHhCCCCeEEEEECCCCCeeccC
Confidence 344566666678899999999999999444578999999999966999999 9999999 7899999999999 99999
Q ss_pred ChHHHHHHHHHHhhhhhh-----hccccc--cceEecccCCC--ccCcccccccHHHHHHhccCcEEEEecCCCCC--Cc
Q 017689 258 TYPELIEIMSKLKDEKGQ-----LMGVDT--SKLLIANSGND--LPVIDLTAVSQELAYLASDADLVILEGMGRGI--ET 326 (367)
Q Consensus 258 T~~D~~~~l~~~~~~d~~-----l~gl~~--~~~~vi~sG~~--~pg~~l~~~s~el~~~l~~aDLII~KGmgNye--~~ 326 (367)
|++|+.|+|+++..++.. ..++++ ...+++.+|.+ .+|++++++|++|++.+++|||||+||||||+ ..
T Consensus 233 T~~D~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~fw~~~~~~~~~~~el~~~l~~adLVI~KG~~Nyr~L~~ 312 (355)
T PF01937_consen 233 TMEDAEWLLERLADSDDFSLSALGKGLDKYLESGRVIVSGDDFWTPGLDLWEMSPELYEELSEADLVIFKGDLNYRKLLG 312 (355)
T ss_dssp BHHHHHHHHHHHH-TTTCHHHHHHTTHHHHHHTSEEEEESSCGGSSS--CCGSHHHHHHHHCC-SEEEEEHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHhcccccccccccchhhccccCeEEecCCCccCCCCChHHcCHHHHHHHhhCCEEEEeCCHHHhhhhc
Confidence 999999999999976422 223433 13456677766 99999999999999999999999999999996 12
Q ss_pred cccc-----------ccccccccccccCCHHHHHHhCCCcCCe
Q 017689 327 NLYA-----------QFKCDSLKIGMVKHPEVAQFLGGRLYDC 358 (367)
Q Consensus 327 ~i~~-----------~f~c~~lkl~~~Kc~~vA~~lg~~~~~~ 358 (367)
+... .+.|+.+.|+++||++||+.+ +++|+.
T Consensus 313 d~~~~~t~~f~~~~~~~p~~i~~L~~~Kc~~va~~~-~~~~d~ 354 (355)
T PF01937_consen 313 DRNWPPTTPFKTALGFFPAPILFLRTVKCDVVAGLL-VGQGDK 354 (355)
T ss_dssp SCTTTTTSEHHHHTGTSS--EEEEEE--SHHHHHHH-STTTHC
T ss_pred CcCCCCCCCccccchhHHHHHHHhHhhCCHHHhCCC-ccCcCC
Confidence 2222 234457778899999999999 888764
No 5
>KOG3870 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=6.6e-36 Score=290.70 Aligned_cols=245 Identities=20% Similarity=0.236 Sum_probs=203.9
Q ss_pred HHHHHHHHHHHHHH--HcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhhhH----HHHHHHHHHHhhhhhcccchhh
Q 017689 99 DCILLCRLREQVLR--ELGFRDIFKKVKDEENAKAISLFGDVVRLNDVIEDEGK----RVESLIRGIFAGNIFDLGSAQL 172 (367)
Q Consensus 99 ~~~~~~~i~~~~~~--~~g~~DPy~~~K~~~n~~Al~~~~~l~~~ld~~~~~~~----~l~~~l~~alaGN~~D~g~~~~ 172 (367)
.||+|++|+.+|.+ .+..+|||.++|++....+...+.++..+...++.+.+ .|.+++++++|||.+|++..+.
T Consensus 119 ECYlYRrI~s~F~~s~~l~~yD~F~~~K~~~~~~s~~~i~ela~~~~~l~~~~~~~~~~F~~llkisLWGN~~Dlsl~~~ 198 (434)
T KOG3870|consen 119 ECYLYRRISSIFQRSSELKKYDYFFDQKESTLTSSLPAIEELAKRTRGLERSLESIHEVFVELLKISLWGNATDLSLNGG 198 (434)
T ss_pred hHHHHHHHHHHHHhhhhhhhcChHHHHhHHHHhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhccccccccccc
Confidence 49999999999985 68899999999999999999999988888777765555 7999999999999999999654
Q ss_pred hhhhcccCCCHHHHHhhhCCCCcccCCHHHHHHHhccC---CCCeEEEEecCCChhhhhchHHHHHHHHhCC--CEEEEE
Q 017689 173 AEVFSKDGMSFLASCQNLVPRPWVIDDLETFKVKWSKK---AWKKAVIFVDNSGADIILGILPFARELLRRG--TQVILA 247 (367)
Q Consensus 173 ~~~~~~~~~~~~~~l~~~~~~~~~vdd~~~~~~~L~~~---~~~~il~~~DNaGeeiv~D~lpLa~~L~~~g--~~V~l~ 247 (367)
.+... +....+++++. ++.+++||++.+|+.|.+. .+++|.||+||||.|++.|++ ||++|++.| ++|++|
T Consensus 199 ~~~~~--~~q~~~~va~~-~~~iLvnd~~~vW~~L~~~k~s~~~rVDfVlDNaGfEL~~DLi-lAeyli~~glA~kV~fH 274 (434)
T KOG3870|consen 199 TESKQ--NIQVLKAVADL-DEFILVNDTEDVWSKLSNAKHSRNGRVDFVLDNAGFELFTDLI-LAEYLISSGLATKVRFH 274 (434)
T ss_pred ccccc--hhHHHHHHHhh-ccceeecChHHHHHHhhcchhcCCceEEEEEeCCccchhHHHH-HHHHHHhccccceEEEc
Confidence 33211 23456677765 7889999999999999865 567999999999999999999 999999998 899999
Q ss_pred ecCCc-ceecCChHHHHHHHHHHhhh-hhhhccccccceEecccCC-----------CccCcccccccHHHHHHhccCcE
Q 017689 248 ANDLP-SINDVTYPELIEIMSKLKDE-KGQLMGVDTSKLLIANSGN-----------DLPVIDLTAVSQELAYLASDADL 314 (367)
Q Consensus 248 vk~~P-~lNDvT~~D~~~~l~~~~~~-d~~l~gl~~~~~~vi~sG~-----------~~pg~~l~~~s~el~~~l~~aDL 314 (367)
+|..| +|+|||..|+.|+++++..+ ++.++.+++.+...+.+|+ ++++..|.++.++|+..+++|+|
T Consensus 275 ~KaiPWFVSDvt~~Df~wll~~L~~~~~~~ls~~g~k~~~~~~~Gk~vl~~~~FWTsph~y~~M~~~~p~Ly~~L~~S~L 354 (434)
T KOG3870|consen 275 VKAIPWFVSDVTEKDFDWLLEFLRDHEDEELSAFGKKLEKFIKEGKIVLRPHYFWTSPHDYYRMPQVAPDLYDDLQKSSL 354 (434)
T ss_pred ccCCceeeecccccchHHHHHHHhccCcHHHHHHHHHHHHHHhcCcEEEccCccccCcchhhcccccchHHHHHHhhCcE
Confidence 99999 89999999999999999975 5555555555555666663 56788999999999999999999
Q ss_pred EEEecCCCCC---------Cc-------ccccccccccccccccCCHHHHH
Q 017689 315 VILEGMGRGI---------ET-------NLYAQFKCDSLKIGMVKHPEVAQ 349 (367)
Q Consensus 315 II~KGmgNye---------~~-------~i~~~f~c~~lkl~~~Kc~~vA~ 349 (367)
||+||+.||- .| +=|. .|+..-|.++||++++.
T Consensus 355 vIFKGDLNYRKL~GD~~W~~Tt~F~t~Lrgf~--p~n~caLRTiKadvv~G 403 (434)
T KOG3870|consen 355 VIFKGDLNYRKLTGDRKWDPTTPFSTALRGFA--PSNICALRTIKADVVVG 403 (434)
T ss_pred EEEeccccHHHHhccCCCCCCCcHHHHhCCCC--CCccceeeeeeeeeeec
Confidence 9999999994 11 1122 56666678999988753
No 6
>COG1737 RpiR Transcriptional regulators [Transcription]
Probab=76.53 E-value=69 Score=30.82 Aligned_cols=122 Identities=15% Similarity=0.088 Sum_probs=75.5
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhhhhhcc-cchhhhhhhcccCCCHHHHHhhhCCCCcc
Q 017689 118 DIFKKVKDEENAKAISLFGDVVRLNDVIEDEGKRVESLIRGIFAGNIFDL-GSAQLAEVFSKDGMSFLASCQNLVPRPWV 196 (367)
Q Consensus 118 DPy~~~K~~~n~~Al~~~~~l~~~ld~~~~~~~~l~~~l~~alaGN~~D~-g~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 196 (367)
|+.....++........+....+.+ ..+.+..++........+.+ |.....-+ . .++...+.++-.+-..
T Consensus 91 ~~~~~~~~~~~~~~~~~l~~t~~~l-----~~~~l~~av~~L~~A~rI~~~G~g~S~~v-A---~~~~~~l~~ig~~~~~ 161 (281)
T COG1737 91 DGPESILEKLLAANIAALERTLNLL-----DEEALERAVELLAKARRIYFFGLGSSGLV-A---SDLAYKLMRIGLNVVA 161 (281)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhc-----CHHHHHHHHHHHHcCCeEEEEEechhHHH-H---HHHHHHHHHcCCceeE
Confidence 4444444444444444444444433 23578888888888886654 54322111 1 2455566666555577
Q ss_pred cCCHHHHHHHhccCCCCeEEEEecCCChhhhhchHHHHHHHHhCCCEEEEEecC
Q 017689 197 IDDLETFKVKWSKKAWKKAVIFVDNSGADIILGILPFARELLRRGTQVILAAND 250 (367)
Q Consensus 197 vdd~~~~~~~L~~~~~~~il~~~DNaGeeiv~D~lpLa~~L~~~g~~V~l~vk~ 250 (367)
++|....+..+.......++++...+|+ - -.++..++...++|.+|+.....
T Consensus 162 ~~d~~~~~~~~~~~~~~Dv~i~iS~sG~-t-~e~i~~a~~ak~~ga~vIaiT~~ 213 (281)
T COG1737 162 LSDTHGQLMQLALLTPGDVVIAISFSGY-T-REIVEAAELAKERGAKVIAITDS 213 (281)
T ss_pred ecchHHHHHHHHhCCCCCEEEEEeCCCC-c-HHHHHHHHHHHHCCCcEEEEcCC
Confidence 7787777644443345789999999998 3 35555778888899888877665
No 7
>PF13500 AAA_26: AAA domain; PDB: 3OF5_A 2IOJ_A 4A0G_B 4A0R_A 4A0H_B 4A0F_B 3FMI_C 3FPA_D 3FMF_C 3FGN_A ....
Probab=61.10 E-value=6.5 Score=35.42 Aligned_cols=115 Identities=22% Similarity=0.220 Sum_probs=56.1
Q ss_pred CCChhhhhchHHHHHHHHhCCCEEEEEecCCcceecCCh-HHHHHHHHHHhhhhhh---hcc--ccccceEecccCCCcc
Q 017689 221 NSGADIILGILPFARELLRRGTQVILAANDLPSINDVTY-PELIEIMSKLKDEKGQ---LMG--VDTSKLLIANSGNDLP 294 (367)
Q Consensus 221 NaGeeiv~D~lpLa~~L~~~g~~V~l~vk~~P~lNDvT~-~D~~~~l~~~~~~d~~---l~g--l~~~~~~vi~sG~~~p 294 (367)
++|- -++=+- |++.|.++|.+|.|. +|+...... +|+..+ ..+...... ... +.+.....+..+....
T Consensus 11 ~vGK-T~vslg-L~~~l~~~g~~v~~~---KPi~~~~~~d~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (199)
T PF13500_consen 11 GVGK-TVVSLG-LARALRRRGIKVGYF---KPIQTGPEDDEDAELI-RELFGLSEPPDDPSPYTFDEPASPHLAAELEGV 84 (199)
T ss_dssp SSSH-HHHHHH-HHHHHHHTTSEEEEE---EEEEESCCCSSHHHHH-HHHCCTCCCHHHHECEEESSSS-HHHHHHHHT-
T ss_pred CCCH-HHHHHH-HHHHHHhCCCceEEE---eeeEecCCCCchHHHH-HHHhCCCcccccccccccCcccCHHHHhhccCC
Confidence 4666 555666 889999999999876 566655542 345443 333322111 111 1110000111100000
Q ss_pred CcccccccHHHHHHhccCcEEEEecCCCCCCcccccccccccccccccCCHHHHHHhCCC
Q 017689 295 VIDLTAVSQELAYLASDADLVILEGMGRGIETNLYAQFKCDSLKIGMVKHPEVAQFLGGR 354 (367)
Q Consensus 295 g~~l~~~s~el~~~l~~aDLII~KGmgNye~~~i~~~f~c~~lkl~~~Kc~~vA~~lg~~ 354 (367)
-..+.++- +.+.-+++|+||.+|.|..- .+++... =+-.+|+.||.+
T Consensus 85 ~~~~~~i~--~~~l~~~~D~vlVEGag~~~-~~~~~~~----------~n~dia~~L~a~ 131 (199)
T PF13500_consen 85 DIDLERII--YKELAEEYDVVLVEGAGGLM-VPIFSGD----------LNADIAKALGAP 131 (199)
T ss_dssp ---HHHHH--HHHCHTTTCEEEEEESSSTT-SECCTTE----------EHHHHHHHHT-E
T ss_pred cccHHHHH--HHHHhhcCCEEEEeCCcccC-cccccCh----------HHHHHHHHcCCC
Confidence 11122222 23334689999999999974 3333311 123677777765
No 8
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=61.03 E-value=1.5e+02 Score=28.01 Aligned_cols=95 Identities=13% Similarity=0.072 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHhhhhhc-ccchhhhhhhcccCCCHHHHHhhhCCCCcccCCHHHHHHHhccCCCCeEEEEecCCChhhhh
Q 017689 150 KRVESLIRGIFAGNIFD-LGSAQLAEVFSKDGMSFLASCQNLVPRPWVIDDLETFKVKWSKKAWKKAVIFVDNSGADIIL 228 (367)
Q Consensus 150 ~~l~~~l~~alaGN~~D-~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~vdd~~~~~~~L~~~~~~~il~~~DNaGeeiv~ 228 (367)
+.+..+++...-++.+. +|......+ . ..+...+..+-..-...+|...+...+...+.+.++|+...+|+ --
T Consensus 116 ~~l~~~~~~i~~a~~I~i~G~G~s~~~-A---~~~~~~l~~~g~~~~~~~d~~~~~~~~~~~~~~Dv~I~iS~sg~-~~- 189 (278)
T PRK11557 116 EKLHECVTMLRSARRIILTGIGASGLV-A---QNFAWKLMKIGINAVAERDMHALLATVQALSPDDLLLAISYSGE-RR- 189 (278)
T ss_pred HHHHHHHHHHhcCCeEEEEecChhHHH-H---HHHHHHHhhCCCeEEEcCChHHHHHHHHhCCCCCEEEEEcCCCC-CH-
Confidence 45777777666555554 355432111 1 12334444432222344566555554443334679999999997 32
Q ss_pred chHHHHHHHHhCCCEEEEEecC
Q 017689 229 GILPFARELLRRGTQVILAAND 250 (367)
Q Consensus 229 D~lpLa~~L~~~g~~V~l~vk~ 250 (367)
+++=.++...++|.+|+.....
T Consensus 190 ~~~~~~~~ak~~ga~iI~IT~~ 211 (278)
T PRK11557 190 ELNLAADEALRVGAKVLAITGF 211 (278)
T ss_pred HHHHHHHHHHHcCCCEEEEcCC
Confidence 2222568888899988888764
No 9
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=59.27 E-value=34 Score=30.61 Aligned_cols=34 Identities=29% Similarity=0.339 Sum_probs=27.2
Q ss_pred CCeEEEEecCCChhhhhchHHHHHHHHhCCCEEEEEecC
Q 017689 212 WKKAVIFVDNSGADIILGILPFARELLRRGTQVILAAND 250 (367)
Q Consensus 212 ~~~il~~~DNaGeeiv~D~lpLa~~L~~~g~~V~l~vk~ 250 (367)
.++|++++ +|+ + .+.. +++.|.++|.+|+++-|.
T Consensus 44 gk~vlViG--~G~-~-~G~~-~a~~L~~~g~~V~v~~r~ 77 (168)
T cd01080 44 GKKVVVVG--RSN-I-VGKP-LAALLLNRNATVTVCHSK 77 (168)
T ss_pred CCEEEEEC--CcH-H-HHHH-HHHHHhhCCCEEEEEECC
Confidence 47888886 486 3 4775 999999999999888875
No 10
>TIGR03006 pepcterm_polyde polysaccharide deactylase family protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide deacetylases (pfam01522). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene. The highest scoring homologs below the trusted cutoff for this model are found in several species of Methanosarcina, an archaeal genus.
Probab=45.14 E-value=1.5e+02 Score=28.42 Aligned_cols=103 Identities=10% Similarity=0.038 Sum_probs=62.0
Q ss_pred CHHHHHHHhccCCCC-eEEEEecCCChhhhhchHHHHHHHHhCCCEEEEEecCCcceecCChHHHHHHHHHHhhhhhhhc
Q 017689 199 DLETFKVKWSKKAWK-KAVIFVDNSGADIILGILPFARELLRRGTQVILAANDLPSINDVTYPELIEIMSKLKDEKGQLM 277 (367)
Q Consensus 199 d~~~~~~~L~~~~~~-~il~~~DNaGeeiv~D~lpLa~~L~~~g~~V~l~vk~~P~lNDvT~~D~~~~l~~~~~~d~~l~ 277 (367)
++..+.+.|++.+-+ +..+++.++.. .- -+++.+.+.|++|-.|.-+++.+++.|.++++.-|.+....-..+.
T Consensus 29 nt~riL~lL~~~gikATFFv~g~~~e~--~p---~lir~i~~~GhEIgsHg~sH~~l~~ls~ee~~~eI~~s~~~Le~it 103 (265)
T TIGR03006 29 NTDRILDLLDRHGVKATFFTLGWVAER--YP---ELVRRIVAAGHELASHGYGHERVTTQTPEAFRADIRRSKALLEDLS 103 (265)
T ss_pred hHHHHHHHHHHcCCcEEEEEeccchhh--CH---HHHHHHHHcCCEeeeccccCcCchhCCHHHHHHHHHHHHHHHHHHh
Confidence 566677777653333 33333333221 11 2569999999999999999999999999888776555553211121
Q ss_pred cccccceEecccCCCccCcccccccHHHHHHhccCc
Q 017689 278 GVDTSKLLIANSGNDLPVIDLTAVSQELAYLASDAD 313 (367)
Q Consensus 278 gl~~~~~~vi~sG~~~pg~~l~~~s~el~~~l~~aD 313 (367)
|- -..|-..|+.....-++...+.++++.
T Consensus 104 G~-------~~~gfRaP~~s~~~~t~~a~~iL~e~G 132 (265)
T TIGR03006 104 GQ-------PVRGYRAPSFSIGKKNLWALDVLAEAG 132 (265)
T ss_pred CC-------CceEEECCCCCCCCCcHHHHHHHHHCC
Confidence 21 123556677666666655556665443
No 11
>PF07592 DDE_Tnp_ISAZ013: Rhodopirellula transposase DDE domain; InterPro: IPR011518 These transposases are found in the planctomycete Rhodopirellula baltica, the cyanobacterium Nostoc, and the Gram-positive bacterium Streptomyces. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=43.50 E-value=25 Score=34.75 Aligned_cols=53 Identities=19% Similarity=0.303 Sum_probs=38.5
Q ss_pred CcccCCHHHHHHHhcc---CCCCeEEEEecCCChhhhhchHHHHHHHHh----CCCEEEEE
Q 017689 194 PWVIDDLETFKVKWSK---KAWKKAVIFVDNSGADIILGILPFARELLR----RGTQVILA 247 (367)
Q Consensus 194 ~~~vdd~~~~~~~L~~---~~~~~il~~~DNaGeeiv~D~lpLa~~L~~----~g~~V~l~ 247 (367)
.|.+|.+..||+.+.+ ..+++++|.+||-|+.=.==.+ +-.+|.+ .|..|.++
T Consensus 161 ~Fav~~i~~WW~~~g~~~yp~a~~lli~~D~GgsN~~r~r~-wk~~L~~la~~~gl~I~v~ 220 (311)
T PF07592_consen 161 DFAVDSIRRWWEEMGKARYPHAKRLLITADNGGSNGSRRRL-WKKRLQELADETGLSIRVC 220 (311)
T ss_pred HHHHHHHHHHHHHhChhhcCchheEEEeccCCCCccchhHH-HHHHHHHHHHHhCCEEEEE
Confidence 3788899999999854 2457999999999985444444 6666655 47776664
No 12
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=42.54 E-value=1.2e+02 Score=26.08 Aligned_cols=87 Identities=24% Similarity=0.337 Sum_probs=44.2
Q ss_pred cCCChhhhhchHHHHHHHHhCCCEEEEEecCCcceecCChH--HHHHHHHHHhhhhhhhccccccceEecccCCC---cc
Q 017689 220 DNSGADIILGILPFARELLRRGTQVILAANDLPSINDVTYP--ELIEIMSKLKDEKGQLMGVDTSKLLIANSGND---LP 294 (367)
Q Consensus 220 DNaGeeiv~D~lpLa~~L~~~g~~V~l~vk~~P~lNDvT~~--D~~~~l~~~~~~d~~l~gl~~~~~~vi~sG~~---~p 294 (367)
-|+|- --+=.. |+.+|.++|.+|.+.....+--.+.+.+ |-... . +|- ...++.++.. .+
T Consensus 9 ~~sGK-TTl~~~-Li~~l~~~g~~v~~ik~~~~g~~~~d~pG~Dt~r~-----~-----aGA---~~~~~~~~~~~~~~~ 73 (140)
T PF03205_consen 9 KNSGK-TTLIRK-LINELKRRGYRVAVIKHTDHGQFEIDPPGTDTWRF-----K-----AGA---DVVLVSSDEPIALET 73 (140)
T ss_dssp TTSSH-HHHHHH-HHHHHHHTT--EEEEEE-STTSTTCSTTCHHHHHH-----H-----CT----SEEEEECSSEEEEEE
T ss_pred CCCCH-HHHHHH-HHHHHhHcCCceEEEEEccCCCcccCCCCcccccc-----c-----ccc---eEEEEEcCCceeeee
Confidence 48887 666666 7889999999988776666633344433 22111 0 010 0112222220 01
Q ss_pred Cc-cccccc-HHHHHHhccCcEEEEecCCC
Q 017689 295 VI-DLTAVS-QELAYLASDADLVILEGMGR 322 (367)
Q Consensus 295 g~-~l~~~s-~el~~~l~~aDLII~KGmgN 322 (367)
.+ .-...+ .++...+. .|+|+.+|.-+
T Consensus 74 ~~~~~~~~~L~~~~~~~~-~Dlvl~eG~k~ 102 (140)
T PF03205_consen 74 QFHQRKSMDLEELLSLLP-VDLVLVEGFKS 102 (140)
T ss_dssp ECSCCCCCBHHHHHHHCC--SEEEEESSSS
T ss_pred eccccCCCCHHHHHHhhC-CCEEEEecCCC
Confidence 11 112222 45666666 99999999999
No 13
>COG0132 BioD Dethiobiotin synthetase [Coenzyme metabolism]
Probab=42.23 E-value=65 Score=30.36 Aligned_cols=97 Identities=21% Similarity=0.205 Sum_probs=60.6
Q ss_pred CCChhhhhchHHHHHHHHhCCCEEEEEecCCcceecCCh----HHHHHHHHHHhhhhhh---hc--cccccceEecccCC
Q 017689 221 NSGADIILGILPFARELLRRGTQVILAANDLPSINDVTY----PELIEIMSKLKDEKGQ---LM--GVDTSKLLIANSGN 291 (367)
Q Consensus 221 NaGeeiv~D~lpLa~~L~~~g~~V~l~vk~~P~lNDvT~----~D~~~~l~~~~~~d~~---l~--gl~~~~~~vi~sG~ 291 (367)
+.|- -|+--. |++.|..+|.+|.+. +|+.+.... .|...+ ++++..+.. .. .+.+-....+..-.
T Consensus 13 ~VGK-Tv~S~a-L~~~l~~~g~~~~~~---KPVqsG~~~~~~~~D~~~l-~~~~~~~~~~~~~~py~f~~P~sPhlAa~~ 86 (223)
T COG0132 13 GVGK-TVVSAA-LAQALKQQGYSVAGY---KPVQTGSEETAENSDALVL-QRLSGLDLSYELINPYRFKEPLSPHLAAEL 86 (223)
T ss_pred CccH-HHHHHH-HHHHHHhCCCeeEEE---CceeeCCCCCCCCchHHHH-HHhcCCCcccccccceecCCCCCcHHHHhh
Confidence 5676 666777 899999999998776 677766555 466553 444432210 00 01110111111111
Q ss_pred CccCcccccccHHHHHHhccCcEEEEecCCCC
Q 017689 292 DLPVIDLTAVSQELAYLASDADLVILEGMGRG 323 (367)
Q Consensus 292 ~~pg~~l~~~s~el~~~l~~aDLII~KGmgNy 323 (367)
..--++++.++..+.+..+++|+|+.+|-|-.
T Consensus 87 eg~~I~~~~l~~~l~~l~~~~d~vlVEGAGGl 118 (223)
T COG0132 87 EGRTIDLEKLSQGLRQLLKKYDLVLVEGAGGL 118 (223)
T ss_pred cCCcccHHHHHHHHHhhhcccCEEEEeCCCce
Confidence 11137888999999999999999999999986
No 14
>PRK14494 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional
Probab=41.91 E-value=1.5e+02 Score=27.90 Aligned_cols=94 Identities=17% Similarity=0.246 Sum_probs=46.8
Q ss_pred eEEEEec--CCChhhhhchHHHHHHHHhCCCEEEEEecCCcceecCChHHHHHHHHHHhhhhhhhccccccceEecccCC
Q 017689 214 KAVIFVD--NSGADIILGILPFARELLRRGTQVILAANDLPSINDVTYPELIEIMSKLKDEKGQLMGVDTSKLLIANSGN 291 (367)
Q Consensus 214 ~il~~~D--NaGeeiv~D~lpLa~~L~~~g~~V~l~vk~~P~lNDvT~~D~~~~l~~~~~~d~~l~gl~~~~~~vi~sG~ 291 (367)
+++.|+. |+|--.+... ++++|.++|.+|.++ |...--.|..-.|.... +.-+- ...++.++.
T Consensus 2 ~vi~ivG~~gsGKTtl~~~--l~~~L~~~G~~V~vi-K~~~~~~d~~~~Dt~r~-----------~~aGA-~~v~~~~~~ 66 (229)
T PRK14494 2 RAIGVIGFKDSGKTTLIEK--ILKNLKERGYRVATA-KHTHHEFDKPDTDTYRF-----------KKAGA-EVVVVSTDE 66 (229)
T ss_pred eEEEEECCCCChHHHHHHH--HHHHHHhCCCeEEEE-EecccCCCCCCchHHHH-----------HHcCC-cEEEEecCC
Confidence 3566665 9998444444 678898899887655 53222223222333221 11111 112233332
Q ss_pred CccCcccccccHHHHHHhccCcEEEEecCCCC
Q 017689 292 DLPVIDLTAVSQELAYLASDADLVILEGMGRG 323 (367)
Q Consensus 292 ~~pg~~l~~~s~el~~~l~~aDLII~KGmgNy 323 (367)
..--..-..--+++...+ +.|+|+.+|-.+.
T Consensus 67 ~~~~~~~~~~l~~ll~~l-~~DlvlVEGfk~~ 97 (229)
T PRK14494 67 TAAFLYDRMDLNEILSLL-DADFLLIEGFKEL 97 (229)
T ss_pred eEEEEecCCCHHHHHhhc-CCCEEEEeCCCCC
Confidence 110000011223444445 7999999999985
No 15
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=38.04 E-value=53 Score=27.13 Aligned_cols=34 Identities=32% Similarity=0.461 Sum_probs=22.6
Q ss_pred EEEecCCChhhhhchHHHHHHHHhCCCEEEEEecC
Q 017689 216 VIFVDNSGADIILGILPFARELLRRGTQVILAAND 250 (367)
Q Consensus 216 l~~~DNaGeeiv~D~lpLa~~L~~~g~~V~l~vk~ 250 (367)
++.+==+|-++ .=.++++++|.++|++|+++...
T Consensus 2 li~~~Gt~Ghv-~P~lala~~L~~rGh~V~~~~~~ 35 (139)
T PF03033_consen 2 LIATGGTRGHV-YPFLALARALRRRGHEVRLATPP 35 (139)
T ss_dssp EEEEESSHHHH-HHHHHHHHHHHHTT-EEEEEETG
T ss_pred EEEEcCChhHH-HHHHHHHHHHhccCCeEEEeecc
Confidence 34444455544 34557999999999999977654
No 16
>PF08328 ASL_C: Adenylosuccinate lyase C-terminal; InterPro: IPR013539 This domain is found at the C terminus of adenylosuccinate lyase(ASL; PurB in Escherichia coli). It has been identified in bacteria, eukaryotes and archaea and is found together with the lyase domain IPR000362 from INTERPRO. ASL catalyses the cleavage of succinylaminoimidazole carboxamide ribotide to aminoimidazole carboxamide ribotide and fumarate and the cleavage of adenylosuccinate to adenylate and fumarate []. ; GO: 0004018 N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity, 0006188 IMP biosynthetic process; PDB: 2HVG_A 2QGA_C 2PTS_A 2PTR_A 2PTQ_B 3BHG_A 3GZH_A.
Probab=36.91 E-value=41 Score=28.41 Aligned_cols=27 Identities=22% Similarity=0.444 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHcCCCcchHHHHHHHH
Q 017689 102 LLCRLREQVLRELGFRDIFKKVKDEEN 128 (367)
Q Consensus 102 ~~~~i~~~~~~~~g~~DPy~~~K~~~n 128 (367)
++.+--+.+++..|.+|||...|+---
T Consensus 54 VlaEpIQTvmRr~g~~~pYE~LK~lTR 80 (115)
T PF08328_consen 54 VLAEPIQTVMRRYGIPNPYEKLKELTR 80 (115)
T ss_dssp GGHHHHHHHHHHTT-SSHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHc
Confidence 566777788899999999999998543
No 17
>PF06838 Met_gamma_lyase: Methionine gamma-lyase ; InterPro: IPR009651 This family represents the aluminium resistance protein, which confers resistance to aluminium in bacteria [].; PDB: 3JZL_A 3I16_C 3GWP_A 3FD0_B 3HT4_F.
Probab=36.83 E-value=14 Score=37.44 Aligned_cols=120 Identities=20% Similarity=0.220 Sum_probs=54.7
Q ss_pred HHHHHHHHHH-HHcCCCcchHHHHH--HHHHHHHHHHHHHHHH--hhhhh-hhhHHHHHHH--HHHHhhhhhcccchhh-
Q 017689 102 LLCRLREQVL-RELGFRDIFKKVKD--EENAKAISLFGDVVRL--NDVIE-DEGKRVESLI--RGIFAGNIFDLGSAQL- 172 (367)
Q Consensus 102 ~~~~i~~~~~-~~~g~~DPy~~~K~--~~n~~Al~~~~~l~~~--ld~~~-~~~~~l~~~l--~~alaGN~~D~g~~~~- 172 (367)
+.++..+.+. +.+|-+|---..-- --...++.++.-++.- +-.+. ...|.|.+.+ +.---|+..|||+...
T Consensus 54 ~GRd~le~iyA~vfgaE~ALVRpq~vSGTHAi~~~Lfg~LrpGD~ll~~tG~PYDTL~~VIG~~g~~~GSL~e~Gi~Y~~ 133 (403)
T PF06838_consen 54 IGRDKLERIYADVFGAEDALVRPQFVSGTHAIALALFGVLRPGDELLSITGKPYDTLEEVIGIRGNGPGSLKEFGIKYRE 133 (403)
T ss_dssp HHHHHHHHHHHHHCT-SEEEEETTS-SHHHHHHHHHHHH--TT-EEEESSSS--CCHHHHHTSSSSSSSSTGGGT-EEEE
T ss_pred ccHHHHHHHHHHHhCchhhhhcccccchHHHHHHHHHhcCCCCCeEEEcCCCchhhHHHHhCCCCCCCCChHHhCceeEE
Confidence 4555555443 67888773221111 1222344444444321 11111 1223455554 2234688999999642
Q ss_pred hhhhcccCCCHHHHHhhhCC----------------CCcccCCHHHHHHHhccCCCCeEEEEecCC
Q 017689 173 AEVFSKDGMSFLASCQNLVP----------------RPWVIDDLETFKVKWSKKAWKKAVIFVDNS 222 (367)
Q Consensus 173 ~~~~~~~~~~~~~~l~~~~~----------------~~~~vdd~~~~~~~L~~~~~~~il~~~DNa 222 (367)
+++..++++|++...+.+.+ +.|.+++..++.+.++.. ...+++|+|||
T Consensus 134 v~L~~dg~~D~~~i~~~~~~~tk~v~IQRSrGYs~R~sl~i~~I~~~i~~vk~~-~p~~iifVDNC 198 (403)
T PF06838_consen 134 VPLTEDGTIDWEAIKKALKPNTKMVLIQRSRGYSWRPSLTIEEIKEIIKFVKEI-NPDVIIFVDNC 198 (403)
T ss_dssp --B-TTSSB-HHHHHHHHHTTEEEEEEE-S-TTSSS----HHHHHHHHHHHHHH--TTSEEEEE-T
T ss_pred EeecCCCCcCHHHHHHhhccCceEEEEecCCCCCCCCCCCHHHHHHHHHHHHhh-CCCeEEEEeCC
Confidence 23434456676554333221 236777778877777642 35799999999
No 18
>cd06167 LabA_like LabA_like proteins. A well conserved group of bacterial proteins with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system. In particular, LabA seems necessary for KaiC-dependent repression of gene expression.
Probab=35.08 E-value=1e+02 Score=25.94 Aligned_cols=33 Identities=21% Similarity=0.393 Sum_probs=26.8
Q ss_pred CCeEEEEecCCChhhhhchHHHHHHHHhCCCEEEEEecC
Q 017689 212 WKKAVIFVDNSGADIILGILPFARELLRRGTQVILAAND 250 (367)
Q Consensus 212 ~~~il~~~DNaGeeiv~D~lpLa~~L~~~g~~V~l~vk~ 250 (367)
...+++++-.+ |+.|+++.|.++|.+|+++.-.
T Consensus 100 ~d~ivLvSgD~------Df~~~i~~lr~~G~~V~v~~~~ 132 (149)
T cd06167 100 IDTIVLVSGDS------DFVPLVERLRELGKRVIVVGFE 132 (149)
T ss_pred CCEEEEEECCc------cHHHHHHHHHHcCCEEEEEccC
Confidence 35788887766 6669999999999999888765
No 19
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=34.39 E-value=2.1e+02 Score=25.15 Aligned_cols=89 Identities=19% Similarity=0.117 Sum_probs=44.4
Q ss_pred cCCChhhhhchHHHHHHHHhCCCEEEEEecCCcc-e-ecCChHHHHHHHHHHhhhhhhhccccccceEecccCC-Cc-cC
Q 017689 220 DNSGADIILGILPFARELLRRGTQVILAANDLPS-I-NDVTYPELIEIMSKLKDEKGQLMGVDTSKLLIANSGN-DL-PV 295 (367)
Q Consensus 220 DNaGeeiv~D~lpLa~~L~~~g~~V~l~vk~~P~-l-NDvT~~D~~~~l~~~~~~d~~l~gl~~~~~~vi~sG~-~~-pg 295 (367)
.|||---+... |+..|..+|.+| -++|..+- + -|..-.|..+.- -+|-. ..++.++. .. ..
T Consensus 10 ~gsGKTTli~~--L~~~l~~~g~~V-~~iK~~~~~~~~d~~g~Ds~~~~---------~aGa~---~v~~~~~~~~~~~~ 74 (159)
T cd03116 10 SGSGKTTLLEK--LIPALSARGLRV-AVIKHDHHDFDIDTPGKDSYRHR---------EAGAE---EVLVSSPRRWALIR 74 (159)
T ss_pred CCCCHHHHHHH--HHHHHHHcCCcE-EEEEecCCcccccCccchHHHHH---------HcCCC---EEEEecCCeEEEEE
Confidence 58888444444 567888888876 44565442 1 143334443320 01211 12222221 11 00
Q ss_pred ccccccc--HHHHHHhccCcEEEEecCCCC
Q 017689 296 IDLTAVS--QELAYLASDADLVILEGMGRG 323 (367)
Q Consensus 296 ~~l~~~s--~el~~~l~~aDLII~KGmgNy 323 (367)
-...... ..+...+.++|+||.+|..+.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~D~vlvEG~k~~ 104 (159)
T cd03116 75 ELRDEPEPDLLLLLRLLDVDLVLVEGFKEE 104 (159)
T ss_pred EcCCCccccHHHHhhCCCCCEEEEccCCCC
Confidence 0001111 124556678999999999996
No 20
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=33.17 E-value=44 Score=29.03 Aligned_cols=26 Identities=31% Similarity=0.376 Sum_probs=22.2
Q ss_pred CChhhhhchHHHHHHHHhCCCEEEEEecCC
Q 017689 222 SGADIILGILPFARELLRRGTQVILAANDL 251 (367)
Q Consensus 222 aGeeiv~D~lpLa~~L~~~g~~V~l~vk~~ 251 (367)
+|- ++.. +|..|...|++|++..+..
T Consensus 7 aG~---~G~A-lA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 7 AGN---WGTA-LAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp SSH---HHHH-HHHHHHHCTEEEEEETSCH
T ss_pred cCH---HHHH-HHHHHHHcCCEEEEEeccH
Confidence 555 6787 9999999999999999865
No 21
>CHL00073 chlN photochlorophyllide reductase subunit N
Probab=33.00 E-value=2e+02 Score=30.12 Aligned_cols=46 Identities=26% Similarity=0.274 Sum_probs=30.8
Q ss_pred CCHHHHHHHhccCCCCeEEEEecCCChhhhhchHHHHHHHHhCCCEEEEEecCCcce
Q 017689 198 DDLETFKVKWSKKAWKKAVIFVDNSGADIILGILPFARELLRRGTQVILAANDLPSI 254 (367)
Q Consensus 198 dd~~~~~~~L~~~~~~~il~~~DNaGeeiv~D~lpLa~~L~~~g~~V~l~vk~~P~l 254 (367)
|-++...+.|. .|++.|++|+.=+ + ++++.|.+.|.+|+.+ +.|+-
T Consensus 303 dal~d~~~~L~---GKrvai~Gdp~~~-i-----~LarfL~elGmevV~v--gt~~~ 348 (457)
T CHL00073 303 ESLKDYLDLVR---GKSVFFMGDNLLE-I-----SLARFLIRCGMIVYEI--GIPYM 348 (457)
T ss_pred HHHHHHHHHHC---CCEEEEECCCcHH-H-----HHHHHHHHCCCEEEEE--EeCCC
Confidence 33344444443 4889888875433 2 6889999999999888 55554
No 22
>PRK12374 putative dithiobiotin synthetase; Provisional
Probab=31.89 E-value=1.5e+02 Score=27.31 Aligned_cols=93 Identities=18% Similarity=0.222 Sum_probs=53.5
Q ss_pred CCChhhhhchHHHHHHHHhCCCEEEEEecCCcceec-------CChHHHHHHHHHHhhh-hhh--hc--cccccceEecc
Q 017689 221 NSGADIILGILPFARELLRRGTQVILAANDLPSIND-------VTYPELIEIMSKLKDE-KGQ--LM--GVDTSKLLIAN 288 (367)
Q Consensus 221 NaGeeiv~D~lpLa~~L~~~g~~V~l~vk~~P~lND-------vT~~D~~~~l~~~~~~-d~~--l~--gl~~~~~~vi~ 288 (367)
++|- -+.=.. |++.|.++|.+|-+. +|+.+. ..-+|+.. +...... .+. +. .+.... .
T Consensus 13 ~vGK-T~vt~~-L~~~l~~~g~~v~~~---KPi~~g~~~~~~~~~~~D~~~-l~~~~~~~~~~~~~~p~~~~~~~----a 82 (231)
T PRK12374 13 SVGK-TVVSRA-LLQALASQGKTVAGY---KPVAKGSKETPEGLRNKDALV-LQSVSSIELPYEAVNPIALSEEE----S 82 (231)
T ss_pred CCCH-HHHHHH-HHHHHHHCCCeEEEE---CccccCCccCCCCCchHHHHH-HHHhcCCCCCHHhccCeecCCCc----C
Confidence 5787 666676 889999999998886 666542 23456665 3444332 111 10 122111 0
Q ss_pred cCCCccCcccccccHHHHHHhccCcEEEEecCCCC
Q 017689 289 SGNDLPVIDLTAVSQELAYLASDADLVILEGMGRG 323 (367)
Q Consensus 289 sG~~~pg~~l~~~s~el~~~l~~aDLII~KGmgNy 323 (367)
.......+++.++-..+.+.-+++|+||.+|-|..
T Consensus 83 ~~~~~~~i~~~~i~~~~~~l~~~~D~VlVEGaGgl 117 (231)
T PRK12374 83 SVAHSCPINYTLMSNGLANLSEKVDHVVVEGTGGW 117 (231)
T ss_pred hHHcCCcCCHHHHHHHHHHHHhhCCEEEEECCCCc
Confidence 11111234446676666554478999999999954
No 23
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=30.78 E-value=40 Score=34.33 Aligned_cols=99 Identities=15% Similarity=0.144 Sum_probs=66.7
Q ss_pred HcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhhhhhcccchhhhhhhcccCCCHHHHHhhhCC
Q 017689 113 ELGFRDIFKKVKDEENAKAISLFGDVVRLNDVIEDEGKRVESLIRGIFAGNIFDLGSAQLAEVFSKDGMSFLASCQNLVP 192 (367)
Q Consensus 113 ~~g~~DPy~~~K~~~n~~Al~~~~~l~~~ld~~~~~~~~l~~~l~~alaGN~~D~g~~~~~~~~~~~~~~~~~~l~~~~~ 192 (367)
.+..+|||..+=++-+..+-.-+|-.+..+|.+-. --+.++++|+..-+|-+ -.+.+.++..
T Consensus 214 ~id~d~~~e~iv~ql~~s~HtRiplyr~~~DnIiG-vlh~r~llr~l~e~~~~-----------------~k~d~~~~a~ 275 (423)
T COG4536 214 GIDIDDPWEEIVRQLLHSPHTRIPLYRDDLDNIIG-VLHVRDLLRLLNEKNEF-----------------TKEDILRAAD 275 (423)
T ss_pred eecCCCCHHHHHHHHhhCCCCceeeecCChhHhhh-hhhHHHHHHHhhccCcc-----------------cHhHHHHHhc
Confidence 45668999999998888887777777766655432 12456677766555543 1223445568
Q ss_pred CCcccCCHHHHHHHhcc--CCCCeEEEEecCCChhhhhchH
Q 017689 193 RPWVIDDLETFKVKWSK--KAWKKAVIFVDNSGADIILGIL 231 (367)
Q Consensus 193 ~~~~vdd~~~~~~~L~~--~~~~~il~~~DNaGeeiv~D~l 231 (367)
+||.+.+...+...|.+ .+.+++-+++|.=|+ + .++.
T Consensus 276 epyFVPe~Tpl~~QL~~F~~~k~hialVVDEYG~-i-~GLV 314 (423)
T COG4536 276 EPYFVPEGTPLSDQLVAFQRNKKHIALVVDEYGD-I-QGLV 314 (423)
T ss_pred CCeecCCCCcHHHHHHHHHHhcceEEEEEeccCc-E-Eeee
Confidence 89999987777666643 235789999999996 4 4544
No 24
>PRK09570 rpoH DNA-directed RNA polymerase subunit H; Reviewed
Probab=30.11 E-value=31 Score=27.21 Aligned_cols=23 Identities=13% Similarity=0.141 Sum_probs=19.5
Q ss_pred ccCCHHHHHHhCCCcCCeEEEec
Q 017689 341 MVKHPEVAQFLGGRLYDCVFKYN 363 (367)
Q Consensus 341 ~~Kc~~vA~~lg~~~~~~V~~~~ 363 (367)
+-+.+|+|+.+|++.||+|=+-.
T Consensus 40 I~~~DPv~r~~g~k~GdVvkI~R 62 (79)
T PRK09570 40 IKASDPVVKAIGAKPGDVIKIVR 62 (79)
T ss_pred eeccChhhhhcCCCCCCEEEEEE
Confidence 45889999999999999987643
No 25
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=30.07 E-value=1.4e+02 Score=29.28 Aligned_cols=34 Identities=26% Similarity=0.421 Sum_probs=25.6
Q ss_pred CCeEEEEecCCChhhhhchHHHHHHHHhCCCEEEEEecC
Q 017689 212 WKKAVIFVDNSGADIILGILPFARELLRRGTQVILAAND 250 (367)
Q Consensus 212 ~~~il~~~DNaGeeiv~D~lpLa~~L~~~g~~V~l~vk~ 250 (367)
.+++++++ .|+ + .++ |++..|.++|..|+++-+.
T Consensus 158 Gk~vvVIG--rs~-~-VG~-pla~lL~~~gatVtv~~s~ 191 (286)
T PRK14175 158 GKNAVVIG--RSH-I-VGQ-PVSKLLLQKNASVTILHSR 191 (286)
T ss_pred CCEEEEEC--CCc-h-hHH-HHHHHHHHCCCeEEEEeCC
Confidence 47888875 443 3 477 7999999999999887654
No 26
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=29.94 E-value=2.8e+02 Score=24.08 Aligned_cols=29 Identities=31% Similarity=0.336 Sum_probs=19.0
Q ss_pred cCCChhhhhchHHHHHHHHhCCCEEEEEecC
Q 017689 220 DNSGADIILGILPFARELLRRGTQVILAAND 250 (367)
Q Consensus 220 DNaGeeiv~D~lpLa~~L~~~g~~V~l~vk~ 250 (367)
-|||- -.+=.- +++.|..+|.+|.+.-..
T Consensus 8 ~gsGK-Ttl~~~-l~~~l~~~G~~V~viK~~ 36 (155)
T TIGR00176 8 KNSGK-TTLIER-LVKALKARGYRVATIKHD 36 (155)
T ss_pred CCCCH-HHHHHH-HHHHHHhcCCeEEEEecc
Confidence 36776 444444 677888889888765443
No 27
>PRK00784 cobyric acid synthase; Provisional
Probab=29.56 E-value=2.6e+02 Score=29.25 Aligned_cols=107 Identities=22% Similarity=0.220 Sum_probs=54.0
Q ss_pred eEEEEec--CCChhhhhchHHHHHHHHhCCCEEEEEecCCc-cee-----c-CChHHHHHHHHHHhhh------hhhhc-
Q 017689 214 KAVIFVD--NSGADIILGILPFARELLRRGTQVILAANDLP-SIN-----D-VTYPELIEIMSKLKDE------KGQLM- 277 (367)
Q Consensus 214 ~il~~~D--NaGeeiv~D~lpLa~~L~~~g~~V~l~vk~~P-~lN-----D-vT~~D~~~~l~~~~~~------d~~l~- 277 (367)
.+.|.+- ++|- -++=.. |++.|.++|.+|... |..- ..+ | --..|+..+...+... +|.+-
T Consensus 4 ~ifItGT~T~vGK-T~vt~~-L~~~l~~~G~~v~~~-Kpv~~~~~~~~~~dg~~~~Da~~l~~~~~~~~~~~~i~P~~~~ 80 (488)
T PRK00784 4 ALMVQGTASDAGK-STLVAG-LCRILARRGYRVAPF-KAQNMSLNSAVTADGGEIGRAQALQAEAAGVEPSVDMNPVLLK 80 (488)
T ss_pred eEEEEeCCCCCcH-HHHHHH-HHHHHHHCCCeEecc-cchhccccceECCCCCeeHHHHHHHHHhCCCCchhccCCEEec
Confidence 3444422 4777 566666 889999999888755 5421 011 1 1235776554333322 22110
Q ss_pred cccccceEecccCCCc-----------cCcccccccHHHHHHhccCcEEEEecCCCC
Q 017689 278 GVDTSKLLIANSGNDL-----------PVIDLTAVSQELAYLASDADLVILEGMGRG 323 (367)
Q Consensus 278 gl~~~~~~vi~sG~~~-----------pg~~l~~~s~el~~~l~~aDLII~KGmgNy 323 (367)
.........+-+|... .-..++.+-..+.+.-+++|+||.+|-|..
T Consensus 81 ~~sp~~a~~~~~g~~~~~l~a~~~~~~~~~~~~~I~~~~~~l~~~~D~vIVEGaGg~ 137 (488)
T PRK00784 81 PQSDRGSQVIVQGKPVGNMDARDYHDYKPRLLEAVLESLDRLAAEYDVVVVEGAGSP 137 (488)
T ss_pred CCCCCcceEEEcCccccccCHHHHhhcchhhHHHHHHHHHHHHhcCCEEEEECCCCc
Confidence 0000011122333221 123445555455444468999999999664
No 28
>PRK12829 short chain dehydrogenase; Provisional
Probab=29.28 E-value=1.2e+02 Score=27.72 Aligned_cols=35 Identities=11% Similarity=0.139 Sum_probs=27.0
Q ss_pred CCeEEEEecCCChhhhhchHHHHHHHHhCCCEEEEEecCC
Q 017689 212 WKKAVIFVDNSGADIILGILPFARELLRRGTQVILAANDL 251 (367)
Q Consensus 212 ~~~il~~~DNaGeeiv~D~lpLa~~L~~~g~~V~l~vk~~ 251 (367)
.++++|.+-+ |. ++.. ++++|+++|.+|+.+.|..
T Consensus 11 ~~~vlItGa~-g~---iG~~-~a~~L~~~g~~V~~~~r~~ 45 (264)
T PRK12829 11 GLRVLVTGGA-SG---IGRA-IAEAFAEAGARVHVCDVSE 45 (264)
T ss_pred CCEEEEeCCC-Cc---HHHH-HHHHHHHCCCEEEEEeCCH
Confidence 4666666554 55 4887 9999999999999999864
No 29
>PF01191 RNA_pol_Rpb5_C: RNA polymerase Rpb5, C-terminal domain; InterPro: IPR000783 Prokaryotes contain a single DNA-dependent RNA polymerase (RNAP; 2.7.7.6 from EC) that is responsible for the transcription of all genes, while eukaryotes have three classes of RNAPs (I-III) that transcribe different sets of genes. Each class of RNA polymerase is an assemblage of ten to twelve different polypeptides. Certain subunits of RNAPs, including RPB5 (POLR2E in mammals), are common to all three eukaryotic polymerases. RPB5 plays a role in the transcription activation process. Eukaryotic RPB5 has a bipartite structure consisting of a unique N-terminal region (IPR005571 from INTERPRO), plus a C-terminal region that is structurally homologous to the prokaryotic RPB5 homologue, subunit H (gene rpoH) [, , , ]. This entry represents prokaryotic subunit H and the C-terminal domain of eukaryotic RPB5, which share a two-layer alpha/beta fold, with a core structure of beta/alpha/beta/alpha/beta(2). ; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 1EIK_A 2Y0S_Z 1DZF_A 3GTG_E 2VUM_E 3GTP_E 3GTO_E 3S17_E 3S1R_E 1I3Q_E ....
Probab=28.93 E-value=35 Score=26.55 Aligned_cols=23 Identities=26% Similarity=0.366 Sum_probs=17.1
Q ss_pred ccCCHHHHHHhCCCcCCeEEEec
Q 017689 341 MVKHPEVAQFLGGRLYDCVFKYN 363 (367)
Q Consensus 341 ~~Kc~~vA~~lg~~~~~~V~~~~ 363 (367)
+-+.+++|+.+|++.||+|=.-.
T Consensus 37 I~~~DPv~r~~g~k~GdVvkI~R 59 (74)
T PF01191_consen 37 ILSSDPVARYLGAKPGDVVKIIR 59 (74)
T ss_dssp EETTSHHHHHTT--TTSEEEEEE
T ss_pred ccccChhhhhcCCCCCCEEEEEe
Confidence 34789999999999999986543
No 30
>PF05226 CHASE2: CHASE2 domain; InterPro: IPR007890 CHASE2 is an extracellular sensory domain, which is present in various classes of transmembrane receptors that are upstream of signal transduction pathways in bacteria. Specifically, CHASE2 domains are found in histidine kinases, adenylate cyclases, serine/threonine kinases and predicted diguanylate cyclases/phosphodiesterases. Environmental factors that are recognised by CHASE2 domains are not known at this time [].
Probab=27.30 E-value=1.8e+02 Score=27.98 Aligned_cols=65 Identities=22% Similarity=0.186 Sum_probs=47.7
Q ss_pred HHHHhhhCCCCcccCCHHHHHHHhccCCCCe--EEEEecCCChh-hhhchHHHHHHHHhCCCEEEEEec
Q 017689 184 LASCQNLVPRPWVIDDLETFKVKWSKKAWKK--AVIFVDNSGAD-IILGILPFARELLRRGTQVILAAN 249 (367)
Q Consensus 184 ~~~l~~~~~~~~~vdd~~~~~~~L~~~~~~~--il~~~DNaGee-iv~D~lpLa~~L~~~g~~V~l~vk 249 (367)
+++++++-.-||..+.+.++.+.|.+.+++. +.++.+..+.. -..|.. |++.|.+.|.+|++.+-
T Consensus 50 ~~Sl~~~g~~Pw~R~~~A~ll~~L~~~ga~~I~~Di~f~~~~~~~~~~D~~-la~al~~~~~~vvl~~~ 117 (310)
T PF05226_consen 50 DESLAELGRWPWPRSVYARLLDRLAAAGAKAIGFDILFDEPDPSNPEGDQA-LAEALRRAGNRVVLASV 117 (310)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhCCCCEEEEEeeecCCCCCCchHHHH-HHHHHHhCCCeEEEEEe
Confidence 4455555457899999999999997655564 56677777520 137998 99999999988888754
No 31
>PRK06924 short chain dehydrogenase; Provisional
Probab=27.06 E-value=4.7e+02 Score=23.56 Aligned_cols=33 Identities=33% Similarity=0.423 Sum_probs=25.1
Q ss_pred eEEEEecCCChhhhhchHHHHHHHHhCCCEEEEEecCC
Q 017689 214 KAVIFVDNSGADIILGILPFARELLRRGTQVILAANDL 251 (367)
Q Consensus 214 ~il~~~DNaGeeiv~D~lpLa~~L~~~g~~V~l~vk~~ 251 (367)
++++. --+|. ++.- ++++|.++|.+|+++.+..
T Consensus 3 ~vlIt-Gasgg---iG~~-ia~~l~~~g~~V~~~~r~~ 35 (251)
T PRK06924 3 YVIIT-GTSQG---LGEA-IANQLLEKGTHVISISRTE 35 (251)
T ss_pred EEEEe-cCCch---HHHH-HHHHHHhcCCEEEEEeCCc
Confidence 44444 45565 5887 8999999999999988765
No 32
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=26.92 E-value=1.9e+02 Score=21.61 Aligned_cols=41 Identities=22% Similarity=0.274 Sum_probs=29.3
Q ss_pred hchHHHHHHHHhCCCEEEEEecCCcceecCChHHHHH-HHHHHh
Q 017689 228 LGILPFARELLRRGTQVILAANDLPSINDVTYPELIE-IMSKLK 270 (367)
Q Consensus 228 ~D~lpLa~~L~~~g~~V~l~vk~~P~lNDvT~~D~~~-~l~~~~ 270 (367)
.++= +|..|.+.|.+|++..++..++ ...-+++.. +.+.+.
T Consensus 10 ig~E-~A~~l~~~g~~vtli~~~~~~~-~~~~~~~~~~~~~~l~ 51 (80)
T PF00070_consen 10 IGIE-LAEALAELGKEVTLIERSDRLL-PGFDPDAAKILEEYLR 51 (80)
T ss_dssp HHHH-HHHHHHHTTSEEEEEESSSSSS-TTSSHHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHhCcEEEEEeccchhh-hhcCHHHHHHHHHHHH
Confidence 3554 7899999999999999998888 555555544 333443
No 33
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=26.55 E-value=1.1e+02 Score=27.57 Aligned_cols=34 Identities=24% Similarity=0.352 Sum_probs=26.2
Q ss_pred CeEEEEecCCChhhhhchHHHHHHHHhCCCEEEEEecCC
Q 017689 213 KKAVIFVDNSGADIILGILPFARELLRRGTQVILAANDL 251 (367)
Q Consensus 213 ~~il~~~DNaGeeiv~D~lpLa~~L~~~g~~V~l~vk~~ 251 (367)
++++|.+= +|. ++.- +++.|+++|.+|++..|+.
T Consensus 6 ~~vlItGa-sg~---iG~~-l~~~l~~~G~~V~~~~r~~ 39 (251)
T PRK07231 6 KVAIVTGA-SSG---IGEG-IARRFAAEGARVVVTDRNE 39 (251)
T ss_pred cEEEEECC-CCh---HHHH-HHHHHHHCCCEEEEEeCCH
Confidence 45555544 454 5887 9999999999999999875
No 34
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=26.33 E-value=1.9e+02 Score=29.43 Aligned_cols=51 Identities=18% Similarity=0.179 Sum_probs=35.6
Q ss_pred CCHHHHHHHhccCCCCeEEEEecCCChhhhhchHHHHHHHHhCCCEEEEEecCCcce
Q 017689 198 DDLETFKVKWSKKAWKKAVIFVDNSGADIILGILPFARELLRRGTQVILAANDLPSI 254 (367)
Q Consensus 198 dd~~~~~~~L~~~~~~~il~~~DNaGeeiv~D~lpLa~~L~~~g~~V~l~vk~~P~l 254 (367)
++.+.+.+.+.....+++++++ +|. + ++= +|..|.+.|.+|+++.++..++
T Consensus 134 ~~~~~l~~~l~~~~~~~vvViG--gG~-i--g~E-~A~~l~~~g~~Vtli~~~~~l~ 184 (438)
T PRK13512 134 EDTDAIDQFIKANQVDKALVVG--AGY-I--SLE-VLENLYERGLHPTLIHRSDKIN 184 (438)
T ss_pred HHHHHHHHHHhhcCCCEEEEEC--CCH-H--HHH-HHHHHHhCCCcEEEEecccccc
Confidence 3445555555433347899987 676 4 554 6789999999999999876554
No 35
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=26.23 E-value=1.1e+02 Score=27.40 Aligned_cols=34 Identities=24% Similarity=0.311 Sum_probs=26.8
Q ss_pred CeEEEEecCCChhhhhchHHHHHHHHhCCCEEEEEecCC
Q 017689 213 KKAVIFVDNSGADIILGILPFARELLRRGTQVILAANDL 251 (367)
Q Consensus 213 ~~il~~~DNaGeeiv~D~lpLa~~L~~~g~~V~l~vk~~ 251 (367)
++++|.+- +|. ++.. +++.|.++|.+|++..|..
T Consensus 6 ~~ilItGa-sg~---iG~~-l~~~l~~~g~~v~~~~r~~ 39 (246)
T PRK05653 6 KTALVTGA-SRG---IGRA-IALRLAADGAKVVIYDSNE 39 (246)
T ss_pred CEEEEECC-CcH---HHHH-HHHHHHHCCCEEEEEeCCh
Confidence 56666665 555 5887 9999999999999998863
No 36
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=25.60 E-value=1.2e+02 Score=26.07 Aligned_cols=32 Identities=28% Similarity=0.490 Sum_probs=26.5
Q ss_pred EEecCCChhhhhchHHHHHHHHhCCCEEEEEecCCc
Q 017689 217 IFVDNSGADIILGILPFARELLRRGTQVILAANDLP 252 (367)
Q Consensus 217 ~~~DNaGeeiv~D~lpLa~~L~~~g~~V~l~vk~~P 252 (367)
.|+.=+|. .+.. ++++|+++|++|+..+|+..
T Consensus 2 ~V~GatG~---vG~~-l~~~L~~~~~~V~~~~R~~~ 33 (183)
T PF13460_consen 2 LVFGATGF---VGRA-LAKQLLRRGHEVTALVRSPS 33 (183)
T ss_dssp EEETTTSH---HHHH-HHHHHHHTTSEEEEEESSGG
T ss_pred EEECCCCh---HHHH-HHHHHHHCCCEEEEEecCch
Confidence 34555676 6887 99999999999999999866
No 37
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=25.36 E-value=4.9e+02 Score=25.74 Aligned_cols=85 Identities=22% Similarity=0.282 Sum_probs=51.9
Q ss_pred eEEEEecCCChhhhhchHHHHHHHHhCCCEEEEE-ec----------------CCcceecCChHH-HHHHHHHHhhhhhh
Q 017689 214 KAVIFVDNSGADIILGILPFARELLRRGTQVILA-AN----------------DLPSINDVTYPE-LIEIMSKLKDEKGQ 275 (367)
Q Consensus 214 ~il~~~DNaGeeiv~D~lpLa~~L~~~g~~V~l~-vk----------------~~P~lNDvT~~D-~~~~l~~~~~~d~~ 275 (367)
.++.++--.+- +|++ +|.++.++|.++++. ++ -+-+..|+|-.| +..+.+++.+
T Consensus 39 ~~vLITGgg~G---lGr~-ialefa~rg~~~vl~Din~~~~~etv~~~~~~g~~~~y~cdis~~eei~~~a~~Vk~---- 110 (300)
T KOG1201|consen 39 EIVLITGGGSG---LGRL-IALEFAKRGAKLVLWDINKQGNEETVKEIRKIGEAKAYTCDISDREEIYRLAKKVKK---- 110 (300)
T ss_pred CEEEEeCCCch---HHHH-HHHHHHHhCCeEEEEeccccchHHHHHHHHhcCceeEEEecCCCHHHHHHHHHHHHH----
Confidence 45555544444 6999 999999999877553 11 222556666433 3333222221
Q ss_pred hccccccceEecccCCCccCcccccccHHHHHHh
Q 017689 276 LMGVDTSKLLIANSGNDLPVIDLTAVSQELAYLA 309 (367)
Q Consensus 276 l~gl~~~~~~vi~sG~~~pg~~l~~~s~el~~~l 309 (367)
.+++ ...+|.|-.-.++..+..++++..+..
T Consensus 111 --e~G~-V~ILVNNAGI~~~~~ll~~~d~ei~k~ 141 (300)
T KOG1201|consen 111 --EVGD-VDILVNNAGIVTGKKLLDCSDEEIQKT 141 (300)
T ss_pred --hcCC-ceEEEeccccccCCCccCCCHHHHHHH
Confidence 2343 456777777778888888998887663
No 38
>PRK06138 short chain dehydrogenase; Provisional
Probab=24.52 E-value=1.1e+02 Score=27.84 Aligned_cols=34 Identities=24% Similarity=0.391 Sum_probs=26.1
Q ss_pred CeEEEEecCCChhhhhchHHHHHHHHhCCCEEEEEecCC
Q 017689 213 KKAVIFVDNSGADIILGILPFARELLRRGTQVILAANDL 251 (367)
Q Consensus 213 ~~il~~~DNaGeeiv~D~lpLa~~L~~~g~~V~l~vk~~ 251 (367)
++++|.+-+ |. ++.- ++++|+++|.+|++..|..
T Consensus 6 k~~lItG~s-g~---iG~~-la~~l~~~G~~v~~~~r~~ 39 (252)
T PRK06138 6 RVAIVTGAG-SG---IGRA-TAKLFAREGARVVVADRDA 39 (252)
T ss_pred cEEEEeCCC-ch---HHHH-HHHHHHHCCCeEEEecCCH
Confidence 456665555 44 4887 9999999999999998764
No 39
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=24.44 E-value=2.9e+02 Score=27.86 Aligned_cols=61 Identities=18% Similarity=0.188 Sum_probs=38.2
Q ss_pred HHHHHHhccCCCCeEEEEecCCChhhhhchHHHHHHHHhCCCEEEEEecCCcceecCChHHHHHHHH
Q 017689 201 ETFKVKWSKKAWKKAVIFVDNSGADIILGILPFARELLRRGTQVILAANDLPSINDVTYPELIEIMS 267 (367)
Q Consensus 201 ~~~~~~L~~~~~~~il~~~DNaGeeiv~D~lpLa~~L~~~g~~V~l~vk~~P~lNDvT~~D~~~~l~ 267 (367)
..+++.+.....++|++++ +|. .++= ++.+|.+.|.+|++..++...+....-+++...+.
T Consensus 138 ~~l~~~l~~~~~~~vvVvG--gG~---~g~e-~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~~l~ 198 (444)
T PRK09564 138 LALKELLKDEEIKNIVIIG--AGF---IGLE-AVEAAKHLGKNVRIIQLEDRILPDSFDKEITDVME 198 (444)
T ss_pred HHHHHHHhhcCCCEEEEEC--CCH---HHHH-HHHHHHhcCCcEEEEeCCcccCchhcCHHHHHHHH
Confidence 3455555433347899987 465 3553 77899999999999887765554322344444333
No 40
>COG0062 Uncharacterized conserved protein [Function unknown]
Probab=24.36 E-value=1.9e+02 Score=26.83 Aligned_cols=42 Identities=21% Similarity=0.364 Sum_probs=30.6
Q ss_pred CCeEEEEe---cCCChhhhhchHHHHHHHHhCCCEEEEEecCCc--ceecCC
Q 017689 212 WKKAVIFV---DNSGADIILGILPFARELLRRGTQVILAANDLP--SINDVT 258 (367)
Q Consensus 212 ~~~il~~~---DNaGeeiv~D~lpLa~~L~~~g~~V~l~vk~~P--~lNDvT 258 (367)
+++|+++| +|-|- ++. .||+|...|..|++...+.| ...+.-
T Consensus 49 ~~~v~vlcG~GnNGGD----G~V-aAR~L~~~G~~V~v~~~~~~~~~~~~~a 95 (203)
T COG0062 49 ARRVLVLCGPGNNGGD----GLV-AARHLKAAGYAVTVLLLGDPKKLKTEAA 95 (203)
T ss_pred CCEEEEEECCCCccHH----HHH-HHHHHHhCCCceEEEEeCCCCCccHHHH
Confidence 46799997 78885 676 99999999977777765544 344433
No 41
>PRK07326 short chain dehydrogenase; Provisional
Probab=24.34 E-value=1.2e+02 Score=27.16 Aligned_cols=34 Identities=29% Similarity=0.473 Sum_probs=26.4
Q ss_pred eEEEEecCCChhhhhchHHHHHHHHhCCCEEEEEecCC
Q 017689 214 KAVIFVDNSGADIILGILPFARELLRRGTQVILAANDL 251 (367)
Q Consensus 214 ~il~~~DNaGeeiv~D~lpLa~~L~~~g~~V~l~vk~~ 251 (367)
+.++++..+|. ++.- ++++|+++|.+|++.+|..
T Consensus 7 ~~ilItGatg~---iG~~-la~~l~~~g~~V~~~~r~~ 40 (237)
T PRK07326 7 KVALITGGSKG---IGFA-IAEALLAEGYKVAITARDQ 40 (237)
T ss_pred CEEEEECCCCc---HHHH-HHHHHHHCCCEEEEeeCCH
Confidence 44445556776 6898 9999999999999998753
No 42
>PF02093 Gag_p30: Gag P30 core shell protein; InterPro: IPR003036 P30 is essential for viral assembly []. Cleavage of P70 in vitro can be accompanied by a shift from a concentrically coiled internal strand ("immature") to a collapsed ("mature") form of the virus core [].; GO: 0019068 virion assembly; PDB: 3BP9_U 1U7K_D 2Y4Z_A 1BM4_A.
Probab=24.34 E-value=24 Score=32.90 Aligned_cols=95 Identities=20% Similarity=0.264 Sum_probs=29.9
Q ss_pred ccccccccccHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCCCchHHHHHHHHHHHHHHHcCCCcchHH
Q 017689 43 IAWLDLFLNSIPSFKKRAESDPTVPDAHVRAEKFAQRYSEILEDMKKDPETHGGPPDCILLCRLREQVLRELGFRDIFKK 122 (367)
Q Consensus 43 ~~wm~~~~~ci~c~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~DPy~~ 122 (367)
+.|++.+..|+-+=++.|...+ .....+.++...+ ..+|.+ .+.|+++.+.+++. .||=..
T Consensus 102 ~~~L~~yrq~LL~GLr~aa~Kp--------------~NlsKv~~v~Qg~--~EsPs~--FLeRL~ea~r~yTp-~dP~~~ 162 (211)
T PF02093_consen 102 REALRLYRQCLLAGLRGAARKP--------------TNLSKVREVTQGP--NESPSA--FLERLREAYRKYTP-FDPESP 162 (211)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-------------------S--TTTTTG--GGHHHH--HHHHHHHHHHHTS--------
T ss_pred HHHHHHHHHHHHHHHHhcCCCC--------------ccHHHHHHHHhCC--CCCHHH--HHHHHHHHHHhcCC-CCCCCC
Confidence 4588999998888887774322 1111133333333 233444 77788877766654 566655
Q ss_pred HHHHHHHHHHHHH----HHHHHHhhhhhh-hhHHHHHHHHH
Q 017689 123 VKDEENAKAISLF----GDVVRLNDVIED-EGKRVESLIRG 158 (367)
Q Consensus 123 ~K~~~n~~Al~~~----~~l~~~ld~~~~-~~~~l~~~l~~ 158 (367)
..+.. .++.++ |++++.|.+++. ....+..+++.
T Consensus 163 ~~~~~--v~~~Fi~QsapDIrkKLq~~eg~~~~~l~~Ll~~ 201 (211)
T PF02093_consen 163 EGQAS--VAMSFITQSAPDIRKKLQKLEGLQGKTLSELLKE 201 (211)
T ss_dssp -----------------------------------------
T ss_pred ccchh--HHHHHHHhccHHHHHHHHhhcCcccCCHHHHHHH
Confidence 55444 333333 888888766653 12345555543
No 43
>PRK12938 acetyacetyl-CoA reductase; Provisional
Probab=23.80 E-value=1.6e+02 Score=26.70 Aligned_cols=32 Identities=16% Similarity=0.364 Sum_probs=25.6
Q ss_pred eEEEEecCCChhhhhchHHHHHHHHhCCCEEEEEec
Q 017689 214 KAVIFVDNSGADIILGILPFARELLRRGTQVILAAN 249 (367)
Q Consensus 214 ~il~~~DNaGeeiv~D~lpLa~~L~~~g~~V~l~vk 249 (367)
++++|+--+|. ++.- +++.|.++|.+|++...
T Consensus 4 k~~lVtG~s~g---iG~~-~a~~l~~~G~~vv~~~~ 35 (246)
T PRK12938 4 RIAYVTGGMGG---IGTS-ICQRLHKDGFKVVAGCG 35 (246)
T ss_pred CEEEEECCCCh---HHHH-HHHHHHHcCCEEEEEcC
Confidence 56677777776 6998 99999999999888654
No 44
>PRK05854 short chain dehydrogenase; Provisional
Probab=23.78 E-value=1.3e+02 Score=29.11 Aligned_cols=35 Identities=34% Similarity=0.467 Sum_probs=29.3
Q ss_pred CCeEEEEecCCChhhhhchHHHHHHHHhCCCEEEEEecCC
Q 017689 212 WKKAVIFVDNSGADIILGILPFARELLRRGTQVILAANDL 251 (367)
Q Consensus 212 ~~~il~~~DNaGeeiv~D~lpLa~~L~~~g~~V~l~vk~~ 251 (367)
.++++|.+-++|- +.- +++.|.+.|.+|+++.|..
T Consensus 14 gk~~lITGas~GI----G~~-~a~~La~~G~~Vil~~R~~ 48 (313)
T PRK05854 14 GKRAVVTGASDGL----GLG-LARRLAAAGAEVILPVRNR 48 (313)
T ss_pred CCEEEEeCCCChH----HHH-HHHHHHHCCCEEEEEeCCH
Confidence 3678887777774 898 9999999999999999863
No 45
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=23.74 E-value=2.2e+02 Score=28.39 Aligned_cols=58 Identities=16% Similarity=0.202 Sum_probs=39.0
Q ss_pred CCHHHHHHHhccCCCCeEEEEecCCChhhhhchHHHHHHHHhCCCEEEEEecCCcceecCChHHHH
Q 017689 198 DDLETFKVKWSKKAWKKAVIFVDNSGADIILGILPFARELLRRGTQVILAANDLPSINDVTYPELI 263 (367)
Q Consensus 198 dd~~~~~~~L~~~~~~~il~~~DNaGeeiv~D~lpLa~~L~~~g~~V~l~vk~~P~lNDvT~~D~~ 263 (367)
+|...+.+.+.. .+++++++ +|. .++= +|..|.++|.+|+++-++...+......++.
T Consensus 132 ~da~~l~~~~~~--~~~vvViG--gG~---ig~E-~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~ 189 (396)
T PRK09754 132 GDAARLREVLQP--ERSVVIVG--AGT---IGLE-LAASATQRRCKVTVIELAATVMGRNAPPPVQ 189 (396)
T ss_pred HHHHHHHHHhhc--CCeEEEEC--CCH---HHHH-HHHHHHHcCCeEEEEecCCcchhhhcCHHHH
Confidence 455556665543 47899887 354 3554 7789999999999998877666544334443
No 46
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=23.35 E-value=1.1e+02 Score=27.99 Aligned_cols=36 Identities=31% Similarity=0.369 Sum_probs=27.3
Q ss_pred CCeEEEEecCCChhhhhchHHHHHHHHhCCCEEEEEecCCc
Q 017689 212 WKKAVIFVDNSGADIILGILPFARELLRRGTQVILAANDLP 252 (367)
Q Consensus 212 ~~~il~~~DNaGeeiv~D~lpLa~~L~~~g~~V~l~vk~~P 252 (367)
.++++|.+- +|. .+.- +++.|.++|.+|+++.+..+
T Consensus 12 ~k~ilItGa-~g~---IG~~-la~~l~~~G~~V~~~~r~~~ 47 (259)
T PRK08213 12 GKTALVTGG-SRG---LGLQ-IAEALGEAGARVVLSARKAE 47 (259)
T ss_pred CCEEEEECC-Cch---HHHH-HHHHHHHcCCEEEEEeCCHH
Confidence 356666664 444 4887 99999999999999988643
No 47
>KOG3218 consensus RNA polymerase, 25-kDa subunit (common to polymerases I, II and III) [Transcription]
Probab=23.18 E-value=44 Score=30.91 Aligned_cols=21 Identities=24% Similarity=0.167 Sum_probs=18.4
Q ss_pred cCCHHHHHHhCCCcCCeEEEe
Q 017689 342 VKHPEVAQFLGGRLYDCVFKY 362 (367)
Q Consensus 342 ~Kc~~vA~~lg~~~~~~V~~~ 362 (367)
-|+++||+.+|.+.|++|=+-
T Consensus 172 q~~DpvaRYyGLKrGqVVKI~ 192 (208)
T KOG3218|consen 172 QKKDPVARYYGLKRGQVVKII 192 (208)
T ss_pred eccChHHhhhccccCcEEEEE
Confidence 489999999999999998653
No 48
>PF01936 NYN: NYN domain; InterPro: IPR021139 This highly conserved domain has no known function. However it contains many conserved aspartates, suggesting an enzymatic function such as an endonuclease or glycosyl hydrolase.; PDB: 2QIP_A.
Probab=23.08 E-value=73 Score=26.49 Aligned_cols=41 Identities=24% Similarity=0.408 Sum_probs=24.5
Q ss_pred CeEEEEecCCChhhhhchHHHHHHHHhCCCEEEEEecCCcceecCChHHHHH
Q 017689 213 KKAVIFVDNSGADIILGILPFARELLRRGTQVILAANDLPSINDVTYPELIE 264 (367)
Q Consensus 213 ~~il~~~DNaGeeiv~D~lpLa~~L~~~g~~V~l~vk~~P~lNDvT~~D~~~ 264 (367)
..+++++-. -|+.|+++.|.++|.+|+++.- .+-+.+++..
T Consensus 97 d~ivLvSgD------~Df~~~v~~l~~~g~~V~v~~~-----~~~~s~~L~~ 137 (146)
T PF01936_consen 97 DTIVLVSGD------SDFAPLVRKLRERGKRVIVVGA-----EDSASEALRS 137 (146)
T ss_dssp SEEEEE---------GGGHHHHHHHHHH--EEEEEE------GGGS-HHHHH
T ss_pred CEEEEEECc------HHHHHHHHHHHHcCCEEEEEEe-----CCCCCHHHHH
Confidence 566666555 3567999999999999999882 4444554433
No 49
>PLN03050 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=23.06 E-value=2.1e+02 Score=27.15 Aligned_cols=32 Identities=25% Similarity=0.425 Sum_probs=25.0
Q ss_pred CeEEEEec--CCChhhhhchHHHHHHHHhCCCEEEEEe
Q 017689 213 KKAVIFVD--NSGADIILGILPFARELLRRGTQVILAA 248 (367)
Q Consensus 213 ~~il~~~D--NaGeeiv~D~lpLa~~L~~~g~~V~l~v 248 (367)
++|++|+- |-|- -++. .||+|..+|.+|.++.
T Consensus 61 ~~V~VlcG~GNNGG---DGlv-~AR~L~~~G~~V~v~~ 94 (246)
T PLN03050 61 PRVLLVCGPGNNGG---DGLV-AARHLAHFGYEVTVCY 94 (246)
T ss_pred CeEEEEECCCCCch---hHHH-HHHHHHHCCCeEEEEE
Confidence 57888863 4444 2676 9999999999999887
No 50
>PRK07577 short chain dehydrogenase; Provisional
Probab=23.03 E-value=1.5e+02 Score=26.46 Aligned_cols=34 Identities=24% Similarity=0.350 Sum_probs=26.0
Q ss_pred CeEEEEecCCChhhhhchHHHHHHHHhCCCEEEEEecCC
Q 017689 213 KKAVIFVDNSGADIILGILPFARELLRRGTQVILAANDL 251 (367)
Q Consensus 213 ~~il~~~DNaGeeiv~D~lpLa~~L~~~g~~V~l~vk~~ 251 (367)
+++++.+-+.| ++.. ++++|.++|.+|++..|..
T Consensus 4 k~vlItG~s~~----iG~~-ia~~l~~~G~~v~~~~r~~ 37 (234)
T PRK07577 4 RTVLVTGATKG----IGLA-LSLRLANLGHQVIGIARSA 37 (234)
T ss_pred CEEEEECCCCc----HHHH-HHHHHHHCCCEEEEEeCCc
Confidence 56665555444 4887 9999999999999998854
No 51
>cd07187 YvcK_like family of mostly uncharacterized proteins similar to B.subtilis YvcK. One member of this protein family, YvcK from Bacillus subtilis, has been proposed to play a role in carbon metabolism, since its function is essential for growth on intermediates of the Krebs cycle and the pentose phosphate pathway. In general, this family of mostly uncharacterized proteins is related to the CofD-like protein family. CofD has been characterized as a 2-phospho-L-lactate transferase involved in F420 biosynthesis. This family appears to have the same conserved phosphate binding site as the other family in this hierarchy, but a different substrate binding site.
Probab=22.86 E-value=1.2e+02 Score=29.90 Aligned_cols=24 Identities=25% Similarity=0.326 Sum_probs=21.0
Q ss_pred ccccHHHHHHhccCcEEEEecCCCC
Q 017689 299 TAVSQELAYLASDADLVILEGMGRG 323 (367)
Q Consensus 299 ~~~s~el~~~l~~aDLII~KGmgNy 323 (367)
...+++..+++++||+||+ |+||.
T Consensus 163 ~~~~~~a~~AI~~AD~Iv~-gPGSl 186 (308)
T cd07187 163 PKANPEALEAIEEADLIVY-GPGSL 186 (308)
T ss_pred CCCCHHHHHHHHhCCEEEE-CCCcc
Confidence 5688999999999998665 99996
No 52
>PRK07454 short chain dehydrogenase; Provisional
Probab=22.76 E-value=1.5e+02 Score=26.76 Aligned_cols=34 Identities=24% Similarity=0.250 Sum_probs=26.3
Q ss_pred CeEEEEecCCChhhhhchHHHHHHHHhCCCEEEEEecCC
Q 017689 213 KKAVIFVDNSGADIILGILPFARELLRRGTQVILAANDL 251 (367)
Q Consensus 213 ~~il~~~DNaGeeiv~D~lpLa~~L~~~g~~V~l~vk~~ 251 (367)
+++++.+ -+|. ++.. +++.|+++|.+|+++.|..
T Consensus 7 k~vlItG-~sg~---iG~~-la~~l~~~G~~V~~~~r~~ 40 (241)
T PRK07454 7 PRALITG-ASSG---IGKA-TALAFAKAGWDLALVARSQ 40 (241)
T ss_pred CEEEEeC-CCch---HHHH-HHHHHHHCCCEEEEEeCCH
Confidence 4555554 4555 5998 9999999999999999864
No 53
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=21.87 E-value=1.4e+02 Score=29.41 Aligned_cols=36 Identities=19% Similarity=0.199 Sum_probs=25.7
Q ss_pred eEEEEecCCChhhhhchHHHHHHHHhCCCEEEEEecC
Q 017689 214 KAVIFVDNSGADIILGILPFARELLRRGTQVILAAND 250 (367)
Q Consensus 214 ~il~~~DNaGeeiv~D~lpLa~~L~~~g~~V~l~vk~ 250 (367)
+|++++=.+-- -+.=+++++++|.++|++|+++.-.
T Consensus 2 rIl~~~~p~~G-Hv~P~l~la~~L~~rGh~V~~~t~~ 37 (401)
T cd03784 2 RVLITTIGSRG-DVQPLVALAWALRAAGHEVRVATPP 37 (401)
T ss_pred eEEEEeCCCcc-hHHHHHHHHHHHHHCCCeEEEeeCH
Confidence 34554444433 4456668999999999999999765
No 54
>COG0698 RpiB Ribose 5-phosphate isomerase RpiB [Carbohydrate transport and metabolism]
Probab=21.49 E-value=1.2e+02 Score=26.90 Aligned_cols=31 Identities=26% Similarity=0.307 Sum_probs=25.1
Q ss_pred eEEEEecCCChhhhhchHHHHHHHHhCCCEEEEE
Q 017689 214 KAVIFVDNSGADIILGILPFARELLRRGTQVILA 247 (367)
Q Consensus 214 ~il~~~DNaGeeiv~D~lpLa~~L~~~g~~V~l~ 247 (367)
+|.|-+|++|.++ -.. .+++|.+.|.+|+=+
T Consensus 2 kIaig~Dhag~~l--K~~-I~~~Lk~~g~~v~D~ 32 (151)
T COG0698 2 KIAIGSDHAGYEL--KEI-IIDHLKSKGYEVIDF 32 (151)
T ss_pred cEEEEcCcccHHH--HHH-HHHHHHHCCCEEEec
Confidence 5889999999854 455 789999999998754
No 55
>PRK08628 short chain dehydrogenase; Provisional
Probab=21.03 E-value=1.4e+02 Score=27.31 Aligned_cols=35 Identities=20% Similarity=0.354 Sum_probs=26.7
Q ss_pred CeEEEEecCCChhhhhchHHHHHHHHhCCCEEEEEecCCc
Q 017689 213 KKAVIFVDNSGADIILGILPFARELLRRGTQVILAANDLP 252 (367)
Q Consensus 213 ~~il~~~DNaGeeiv~D~lpLa~~L~~~g~~V~l~vk~~P 252 (367)
++++|.+-+.| ++.- ++++|.++|.+|++.++..+
T Consensus 8 ~~ilItGasgg----iG~~-la~~l~~~G~~v~~~~r~~~ 42 (258)
T PRK08628 8 KVVIVTGGASG----IGAA-ISLRLAEEGAIPVIFGRSAP 42 (258)
T ss_pred CEEEEeCCCCh----HHHH-HHHHHHHcCCcEEEEcCChh
Confidence 55666555444 4887 99999999999999887654
No 56
>PF11576 DUF3236: Protein of unknown function (DUF3236); InterPro: IPR012019 This family of proteins with unknown function appears to be restricted to Methanobacteria. ; PDB: 3BRC_B.
Probab=20.58 E-value=76 Score=27.93 Aligned_cols=26 Identities=42% Similarity=0.433 Sum_probs=14.5
Q ss_pred cccccHHHHHH-hccCcEEEEecCCCC
Q 017689 298 LTAVSQELAYL-ASDADLVILEGMGRG 323 (367)
Q Consensus 298 l~~~s~el~~~-l~~aDLII~KGmgNy 323 (367)
|+.++..+... ..+|||||++|-.--
T Consensus 78 mPA~~K~LmavD~~dADlvIARGRLGv 104 (154)
T PF11576_consen 78 MPALSKALMAVDISDADLVIARGRLGV 104 (154)
T ss_dssp SHHHHHHHHHHHHH--SEEEEEEE-SS
T ss_pred CcHHHhHHHheeccCCcEEEEcccccC
Confidence 33444444444 368999999997664
No 57
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=20.56 E-value=2.9e+02 Score=27.26 Aligned_cols=47 Identities=23% Similarity=0.373 Sum_probs=33.2
Q ss_pred CCeEEEEecCCChhhhhchHHHHHHHHhCCCEEEEEecCCcceecCChHHHHH
Q 017689 212 WKKAVIFVDNSGADIILGILPFARELLRRGTQVILAANDLPSINDVTYPELIE 264 (367)
Q Consensus 212 ~~~il~~~DNaGeeiv~D~lpLa~~L~~~g~~V~l~vk~~P~lNDvT~~D~~~ 264 (367)
.+++++++ +|. .++= +|..|.+.|.+|+++.++...+......++..
T Consensus 141 ~~~vvViG--gG~---~g~e-~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~ 187 (377)
T PRK04965 141 AQRVLVVG--GGL---IGTE-LAMDLCRAGKAVTLVDNAASLLASLMPPEVSS 187 (377)
T ss_pred CCeEEEEC--CCH---HHHH-HHHHHHhcCCeEEEEecCCcccchhCCHHHHH
Confidence 47899888 565 3554 77899999999999988766554443444443
No 58
>KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only]
Probab=20.15 E-value=6.6e+02 Score=23.96 Aligned_cols=86 Identities=20% Similarity=0.273 Sum_probs=48.3
Q ss_pred eEEEEecCCChhhhhchHHHHHHHHhCCCEEEEEecCCc---------------------ceecCC-hHHHHHHHHHHhh
Q 017689 214 KAVIFVDNSGADIILGILPFARELLRRGTQVILAANDLP---------------------SINDVT-YPELIEIMSKLKD 271 (367)
Q Consensus 214 ~il~~~DNaGeeiv~D~lpLa~~L~~~g~~V~l~vk~~P---------------------~lNDvT-~~D~~~~l~~~~~ 271 (367)
++.+++-.+-- | +.- .++.|.+.|.+|+.+.|... +.-|++ .++...+++....
T Consensus 9 kvalVTG~s~G-I--G~a-ia~~la~~Ga~v~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~l~~~~~~ 84 (270)
T KOG0725|consen 9 KVALVTGGSSG-I--GKA-IALLLAKAGAKVVITGRSEERLEETAQELGGLGYTGGKVLAIVCDVSKEVDVEKLVEFAVE 84 (270)
T ss_pred cEEEEECCCCh-H--HHH-HHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeeEEEECcCCCHHHHHHHHHHHHH
Confidence 44445444443 3 775 88999999999999998633 556787 4445555444443
Q ss_pred h-hhhhccccccceEecccCCCccCcccccccHHHHHHh
Q 017689 272 E-KGQLMGVDTSKLLIANSGNDLPVIDLTAVSQELAYLA 309 (367)
Q Consensus 272 ~-d~~l~gl~~~~~~vi~sG~~~pg~~l~~~s~el~~~l 309 (367)
. ... ++ ..|...|...+.-...+.|+|-.+..
T Consensus 85 ~~~Gk---id---iLvnnag~~~~~~~~~~~s~e~~d~~ 117 (270)
T KOG0725|consen 85 KFFGK---ID---ILVNNAGALGLTGSILDLSEEVFDKI 117 (270)
T ss_pred HhCCC---CC---EEEEcCCcCCCCCChhhCCHHHHHHH
Confidence 2 111 22 23444454433324556666655443
No 59
>COG2012 RPB5 DNA-directed RNA polymerase, subunit H, RpoH/RPB5 [Transcription]
Probab=20.03 E-value=1e+02 Score=24.38 Aligned_cols=21 Identities=29% Similarity=0.202 Sum_probs=17.5
Q ss_pred CCHHHHHHhCCCcCCeEEEec
Q 017689 343 KHPEVAQFLGGRLYDCVFKYN 363 (367)
Q Consensus 343 Kc~~vA~~lg~~~~~~V~~~~ 363 (367)
..+|+|+.+|++.||+|=+-.
T Consensus 45 ~~DPva~~lgak~GdvVkIvR 65 (80)
T COG2012 45 ASDPVAKALGAKPGDVVKIVR 65 (80)
T ss_pred ccChhHHHccCCCCcEEEEEe
Confidence 578999999999999775543
Done!