Query 017690
Match_columns 367
No_of_seqs 153 out of 651
Neff 4.3
Searched_HMMs 46136
Date Fri Mar 29 02:35:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017690.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017690hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5066 SCS2 VAMP-associated p 99.9 3.7E-25 7.9E-30 205.6 12.5 121 6-128 3-124 (242)
2 KOG0439 VAMP-associated protei 99.9 7.1E-24 1.5E-28 194.1 14.5 130 3-134 6-138 (218)
3 PF00635 Motile_Sperm: MSP (Ma 99.9 1.1E-21 2.3E-26 159.9 12.4 104 6-110 2-107 (109)
4 PF14874 PapD-like: Flagellar- 98.4 2.9E-06 6.2E-11 68.9 10.8 70 4-73 2-74 (102)
5 PF00345 PapD_N: Pili and flag 96.2 0.042 9.2E-07 46.2 9.2 83 6-95 2-93 (122)
6 PF04102 SlyX: SlyX; InterPro 92.0 0.63 1.4E-05 36.6 6.4 51 274-324 2-52 (69)
7 PF14646 MYCBPAP: MYCBP-associ 91.9 0.69 1.5E-05 47.5 8.5 75 12-90 238-325 (426)
8 PRK04325 hypothetical protein; 91.3 0.8 1.7E-05 36.7 6.5 56 269-324 2-57 (74)
9 PRK04406 hypothetical protein; 91.2 1.1 2.3E-05 36.3 7.1 55 270-324 5-59 (75)
10 PRK09918 putative fimbrial cha 90.3 2.2 4.7E-05 40.6 9.5 83 6-95 26-113 (230)
11 PRK00846 hypothetical protein; 89.9 1.4 3E-05 36.1 6.7 51 272-322 9-59 (77)
12 PRK09926 putative chaperone pr 88.9 3.1 6.6E-05 40.0 9.5 86 5-95 26-121 (246)
13 PRK02119 hypothetical protein; 88.4 2.3 4.9E-05 34.1 6.9 54 271-324 4-57 (73)
14 PRK15249 fimbrial chaperone pr 88.4 3.3 7.1E-05 40.1 9.4 86 5-95 29-125 (253)
15 COG3883 Uncharacterized protei 87.5 2 4.4E-05 42.4 7.4 76 249-324 25-100 (265)
16 PRK02793 phi X174 lysis protei 87.5 2.6 5.6E-05 33.7 6.7 52 273-324 5-56 (72)
17 PRK00736 hypothetical protein; 86.7 2.8 6E-05 33.1 6.4 51 274-324 3-53 (68)
18 PF07610 DUF1573: Protein of u 86.2 2.8 6E-05 30.2 5.7 43 27-70 2-45 (45)
19 PRK00295 hypothetical protein; 86.0 3.2 6.9E-05 32.8 6.5 51 274-324 3-53 (68)
20 PRK11385 putativi pili assembl 85.3 6.3 0.00014 38.0 9.4 85 6-95 28-124 (236)
21 PF13870 DUF4201: Domain of un 85.1 5.2 0.00011 36.2 8.3 74 256-329 71-144 (177)
22 PRK15211 fimbrial chaperone pr 84.8 14 0.00031 35.4 11.5 84 6-95 24-113 (229)
23 PF14197 Cep57_CLD_2: Centroso 84.7 4.6 0.0001 32.1 6.8 55 269-323 5-66 (69)
24 PRK15246 fimbrial assembly cha 84.6 13 0.00028 35.8 11.1 86 5-95 11-106 (233)
25 PRK15295 fimbrial assembly cha 83.5 9.6 0.00021 36.3 9.7 85 5-95 20-111 (226)
26 PRK15299 fimbrial chaperone pr 82.4 11 0.00024 35.8 9.6 85 5-95 23-115 (227)
27 PF11614 FixG_C: IG-like fold 81.8 5.1 0.00011 33.6 6.4 51 24-74 34-86 (118)
28 PRK10884 SH3 domain-containing 81.1 7.7 0.00017 36.8 8.0 58 265-322 96-164 (206)
29 PRK15290 lfpB fimbrial chapero 79.8 24 0.00052 34.2 11.1 85 6-95 39-131 (243)
30 PRK15208 long polar fimbrial c 77.9 17 0.00037 34.6 9.3 85 5-95 22-112 (228)
31 PF10473 CENP-F_leu_zip: Leuci 77.0 12 0.00027 33.7 7.6 56 267-322 43-98 (140)
32 PRK15192 fimbrial chaperone Bc 77.0 29 0.00062 33.6 10.6 82 6-95 24-119 (234)
33 COG3121 FimC P pilus assembly 76.8 31 0.00068 33.0 10.8 85 6-96 29-120 (235)
34 PF03962 Mnd1: Mnd1 family; I 76.4 4.9 0.00011 37.4 5.1 57 265-322 72-128 (188)
35 PF10473 CENP-F_leu_zip: Leuci 76.0 16 0.00036 32.9 8.1 63 258-321 21-83 (140)
36 PRK15254 fimbrial chaperone pr 75.7 24 0.00052 34.1 9.7 86 5-95 17-110 (239)
37 PRK15188 fimbrial chaperone pr 75.0 24 0.00052 33.9 9.5 84 6-95 29-118 (228)
38 PRK11637 AmiB activator; Provi 73.8 13 0.00028 38.2 7.8 49 273-321 72-120 (428)
39 PF13234 rRNA_proc-arch: rRNA- 73.1 3.4 7.3E-05 39.6 3.3 55 269-323 214-268 (268)
40 PF06280 DUF1034: Fn3-like dom 72.6 9.1 0.0002 31.8 5.4 55 20-74 7-82 (112)
41 PRK11637 AmiB activator; Provi 72.0 16 0.00035 37.5 8.0 56 266-321 72-127 (428)
42 PRK15195 fimbrial chaperone pr 70.5 38 0.00081 32.4 9.7 84 6-95 27-116 (229)
43 PRK15218 fimbrial chaperone pr 69.2 66 0.0014 30.8 11.0 82 8-95 22-113 (226)
44 PF05008 V-SNARE: Vesicle tran 67.9 17 0.00036 28.4 5.6 51 272-322 21-72 (79)
45 KOG0995 Centromere-associated 67.7 18 0.00038 39.4 7.4 61 266-326 270-330 (581)
46 PF12777 MT: Microtubule-bindi 67.5 15 0.00033 36.8 6.6 55 267-321 226-280 (344)
47 PRK15274 putative periplasmic 65.7 87 0.0019 30.8 11.2 80 11-95 33-120 (257)
48 TIGR03079 CH4_NH3mon_ox_B meth 65.6 26 0.00056 36.5 7.8 56 19-74 280-356 (399)
49 PRK15224 pili assembly chapero 64.7 85 0.0018 30.4 10.8 81 7-95 31-118 (237)
50 PF08912 Rho_Binding: Rho Bind 62.3 29 0.00062 28.1 5.9 33 267-299 1-33 (69)
51 PF03962 Mnd1: Mnd1 family; I 61.9 29 0.00063 32.3 6.9 63 265-328 65-127 (188)
52 PRK15233 putative fimbrial cha 60.9 75 0.0016 31.1 9.7 76 12-95 48-130 (246)
53 PF05546 She9_MDM33: She9 / Md 60.4 30 0.00066 33.2 6.8 84 265-358 26-112 (207)
54 PRK15253 putative fimbrial ass 60.4 1.2E+02 0.0026 29.4 11.0 79 11-95 40-128 (242)
55 PF05064 Nsp1_C: Nsp1-like C-t 59.9 20 0.00044 30.8 5.1 70 250-319 17-86 (116)
56 PF06148 COG2: COG (conserved 59.7 14 0.00031 31.8 4.2 61 249-310 56-117 (133)
57 PF15035 Rootletin: Ciliary ro 59.6 40 0.00087 31.4 7.4 71 273-343 78-160 (182)
58 PF10633 NPCBM_assoc: NPCBM-as 59.4 17 0.00038 28.2 4.3 55 20-74 4-62 (78)
59 PF00038 Filament: Intermediat 57.4 56 0.0012 31.6 8.3 57 265-321 78-134 (312)
60 PF08647 BRE1: BRE1 E3 ubiquit 57.2 59 0.0013 27.0 7.3 58 267-324 15-72 (96)
61 PF00927 Transglut_C: Transglu 56.5 38 0.00083 27.7 6.1 57 19-75 13-79 (107)
62 PRK15285 putative fimbrial cha 56.2 1.7E+02 0.0036 28.6 11.3 80 11-95 32-119 (250)
63 PF04744 Monooxygenase_B: Mono 55.8 54 0.0012 34.2 8.1 65 6-72 249-335 (381)
64 PF02883 Alpha_adaptinC2: Adap 55.0 1.2E+02 0.0026 24.9 9.2 60 13-72 13-79 (115)
65 PRK09413 IS2 repressor TnpA; R 54.1 25 0.00054 30.0 4.7 36 285-320 73-108 (121)
66 PF12325 TMF_TATA_bd: TATA ele 53.8 77 0.0017 27.8 7.8 53 267-319 28-83 (120)
67 smart00809 Alpha_adaptinC2 Ada 52.6 91 0.002 25.0 7.6 53 20-72 17-73 (104)
68 PF11559 ADIP: Afadin- and alp 51.7 77 0.0017 27.8 7.6 57 265-321 69-125 (151)
69 PF02346 Vac_Fusion: Chordopox 50.7 75 0.0016 24.7 6.4 54 270-323 2-55 (57)
70 PF05506 DUF756: Domain of unk 47.3 58 0.0013 26.1 5.6 44 24-70 21-65 (89)
71 PF06005 DUF904: Protein of un 47.1 99 0.0022 24.8 6.8 39 279-317 7-52 (72)
72 PF10498 IFT57: Intra-flagella 47.1 68 0.0015 33.0 7.3 61 261-321 265-325 (359)
73 PF04508 Pox_A_type_inc: Viral 47.0 19 0.0004 23.4 2.1 20 270-289 2-21 (23)
74 KOG2077 JNK/SAPK-associated pr 46.8 58 0.0013 36.0 7.0 69 255-323 315-383 (832)
75 PF07926 TPR_MLP1_2: TPR/MLP1/ 46.7 98 0.0021 26.9 7.4 51 269-322 66-116 (132)
76 PF07795 DUF1635: Protein of u 45.9 63 0.0014 31.3 6.4 34 284-317 27-60 (214)
77 PF12325 TMF_TATA_bd: TATA ele 45.0 61 0.0013 28.4 5.8 44 278-321 18-61 (120)
78 TIGR02449 conserved hypothetic 45.0 1.2E+02 0.0025 24.3 6.8 52 270-321 1-52 (65)
79 PF00769 ERM: Ezrin/radixin/mo 44.2 78 0.0017 30.6 6.9 43 279-321 50-92 (246)
80 PF15456 Uds1: Up-regulated Du 43.7 1.3E+02 0.0029 26.4 7.7 31 265-296 32-62 (124)
81 PF06030 DUF916: Bacterial pro 42.9 1.6E+02 0.0034 25.5 8.0 28 15-42 21-48 (121)
82 PF04880 NUDE_C: NUDE protein, 42.8 21 0.00046 33.1 2.7 46 271-321 2-54 (166)
83 PF06810 Phage_GP20: Phage min 42.7 86 0.0019 28.4 6.5 61 269-329 20-87 (155)
84 PF13863 DUF4200: Domain of un 42.7 1.8E+02 0.0039 24.4 8.2 58 265-322 42-99 (126)
85 PF00261 Tropomyosin: Tropomyo 42.7 66 0.0014 30.6 6.1 47 277-323 2-48 (237)
86 PF07888 CALCOCO1: Calcium bin 42.2 47 0.001 36.1 5.5 57 19-77 18-83 (546)
87 PF06637 PV-1: PV-1 protein (P 42.2 1.7E+02 0.0036 31.0 9.1 90 269-358 58-173 (442)
88 PF02753 PapD_C: Pili assembly 42.0 22 0.00048 26.9 2.3 45 27-71 1-46 (68)
89 PF07106 TBPIP: Tat binding pr 41.9 57 0.0012 29.2 5.3 12 307-318 126-137 (169)
90 PF11611 DUF4352: Domain of un 41.4 98 0.0021 25.2 6.3 52 21-72 36-101 (123)
91 PF08317 Spc7: Spc7 kinetochor 40.3 1.3E+02 0.0028 30.1 8.0 61 269-333 216-276 (325)
92 PF03961 DUF342: Protein of un 40.3 1E+02 0.0022 32.1 7.5 31 267-297 332-362 (451)
93 TIGR03185 DNA_S_dndD DNA sulfu 39.7 84 0.0018 34.2 7.0 56 267-322 396-467 (650)
94 PF04728 LPP: Lipoprotein leuc 39.5 75 0.0016 24.7 4.8 36 264-299 5-40 (56)
95 PF04880 NUDE_C: NUDE protein, 39.5 37 0.00081 31.5 3.7 46 278-327 2-47 (166)
96 PF08614 ATG16: Autophagy prot 39.4 55 0.0012 30.1 4.9 48 272-319 98-145 (194)
97 PF06705 SF-assemblin: SF-asse 39.4 1.1E+02 0.0024 29.1 7.1 65 256-320 72-137 (247)
98 PF07798 DUF1640: Protein of u 39.2 1.1E+02 0.0025 27.8 6.8 73 256-331 67-158 (177)
99 PF08826 DMPK_coil: DMPK coile 38.6 1.3E+02 0.0028 23.6 6.1 45 267-318 16-60 (61)
100 PF13851 GAS: Growth-arrest sp 37.8 1.5E+02 0.0033 27.8 7.6 49 269-317 34-82 (201)
101 PF00769 ERM: Ezrin/radixin/mo 37.4 82 0.0018 30.5 5.9 42 279-320 78-119 (246)
102 PF06156 DUF972: Protein of un 37.3 1.6E+02 0.0034 25.4 7.0 52 267-318 6-57 (107)
103 KOG1029 Endocytic adaptor prot 37.0 95 0.002 35.6 6.9 57 284-340 466-522 (1118)
104 PF06156 DUF972: Protein of un 36.1 1.5E+02 0.0034 25.4 6.8 52 271-322 3-54 (107)
105 PRK10884 SH3 domain-containing 35.6 1.3E+02 0.0027 28.7 6.7 49 275-323 124-172 (206)
106 PF08317 Spc7: Spc7 kinetochor 35.4 1.2E+02 0.0026 30.3 6.9 13 172-184 67-80 (325)
107 PRK15308 putative fimbrial pro 35.4 4.3E+02 0.0093 25.7 10.4 86 3-96 15-118 (234)
108 PRK13169 DNA replication intia 35.1 1.8E+02 0.0038 25.3 7.0 50 267-316 6-55 (110)
109 PF11221 Med21: Subunit 21 of 35.0 1.5E+02 0.0031 26.4 6.7 61 259-321 75-135 (144)
110 PF10845 DUF2576: Protein of u 34.9 37 0.00079 25.6 2.4 24 305-328 12-41 (48)
111 PF08606 Prp19: Prp19/Pso4-lik 34.6 1.1E+02 0.0024 24.8 5.3 41 269-316 29-69 (70)
112 PF03173 CHB_HEX: Putative car 34.2 35 0.00077 31.3 2.7 34 39-72 69-104 (164)
113 PRK04863 mukB cell division pr 34.1 2.2E+02 0.0048 34.7 9.8 75 266-340 352-430 (1486)
114 PF12761 End3: Actin cytoskele 34.1 63 0.0014 30.8 4.4 47 269-318 94-142 (195)
115 COG2900 SlyX Uncharacterized p 33.8 2E+02 0.0044 23.5 6.6 52 272-323 4-55 (72)
116 COG2433 Uncharacterized conser 33.4 1.6E+02 0.0035 32.7 7.9 18 56-73 211-228 (652)
117 COG1196 Smc Chromosome segrega 33.2 2E+02 0.0043 33.8 9.0 78 267-344 847-925 (1163)
118 PF10174 Cast: RIM-binding pro 32.9 1.1E+02 0.0023 34.8 6.6 59 270-328 302-360 (775)
119 PF02388 FemAB: FemAB family; 32.9 1.6E+02 0.0035 30.3 7.5 56 262-321 242-297 (406)
120 PRK01026 tetrahydromethanopter 32.6 53 0.0011 27.1 3.2 25 268-292 14-38 (77)
121 PF13473 Cupredoxin_1: Cupredo 32.3 2.1E+02 0.0045 23.3 6.8 55 7-73 31-86 (104)
122 TIGR03185 DNA_S_dndD DNA sulfu 32.1 1.5E+02 0.0032 32.3 7.4 51 269-319 421-471 (650)
123 PF04111 APG6: Autophagy prote 31.9 1.7E+02 0.0036 29.4 7.2 53 268-320 42-94 (314)
124 PF13815 Dzip-like_N: Iguana/D 31.7 1.2E+02 0.0026 25.9 5.5 39 274-312 78-116 (118)
125 COG3883 Uncharacterized protei 31.7 1.5E+02 0.0033 29.5 6.8 69 256-325 47-119 (265)
126 PF13870 DUF4201: Domain of un 31.7 87 0.0019 28.3 4.8 55 267-321 89-143 (177)
127 TIGR01149 mtrG N5-methyltetrah 31.6 58 0.0013 26.5 3.2 24 268-291 11-34 (70)
128 KOG3850 Predicted membrane pro 31.3 92 0.002 32.9 5.4 56 267-328 279-348 (455)
129 PF07989 Microtub_assoc: Micro 30.9 2.3E+02 0.005 22.8 6.6 26 262-287 7-32 (75)
130 PF15619 Lebercilin: Ciliary p 30.8 1.8E+02 0.0039 27.4 6.9 64 265-328 64-142 (194)
131 PF12690 BsuPI: Intracellular 30.8 1.8E+02 0.0038 23.6 6.0 20 24-43 3-22 (82)
132 PF04210 MtrG: Tetrahydrometha 30.5 60 0.0013 26.4 3.1 25 268-292 11-35 (70)
133 PHA02562 46 endonuclease subun 30.5 1.5E+02 0.0032 30.9 6.9 20 267-286 304-323 (562)
134 KOG0239 Kinesin (KAR3 subfamil 30.4 2.5E+02 0.0054 31.4 8.8 71 265-335 192-272 (670)
135 PRK13729 conjugal transfer pil 30.1 1.1E+02 0.0024 32.8 5.9 46 275-320 68-120 (475)
136 PRK14163 heat shock protein Gr 30.1 1.1E+02 0.0025 29.4 5.5 43 270-312 41-87 (214)
137 PF13205 Big_5: Bacterial Ig-l 29.9 2.2E+02 0.0047 22.5 6.4 56 12-70 26-84 (107)
138 PF05529 Bap31: B-cell recepto 29.8 1.4E+02 0.0031 27.2 6.0 54 269-322 118-172 (192)
139 KOG2685 Cystoskeletal protein 29.3 1.5E+02 0.0033 31.3 6.6 56 256-318 338-393 (421)
140 PRK14148 heat shock protein Gr 29.3 1.4E+02 0.0029 28.4 5.8 45 267-311 38-86 (195)
141 COG5185 HEC1 Protein involved 29.1 2.3E+02 0.0049 31.0 7.9 63 256-318 258-323 (622)
142 PF06005 DUF904: Protein of un 28.7 2.6E+02 0.0057 22.4 6.5 46 269-321 18-63 (72)
143 PF05529 Bap31: B-cell recepto 28.5 2.2E+02 0.0048 26.0 6.9 24 266-289 122-145 (192)
144 PHA02562 46 endonuclease subun 28.0 1.4E+02 0.0031 31.1 6.3 38 284-321 338-375 (562)
145 PF10212 TTKRSYEDQ: Predicted 28.0 2.6E+02 0.0056 30.5 8.2 69 253-321 404-472 (518)
146 PF13851 GAS: Growth-arrest sp 27.8 2.1E+02 0.0044 27.0 6.7 77 255-331 13-89 (201)
147 COG1579 Zn-ribbon protein, pos 27.5 2.3E+02 0.005 27.8 7.1 47 280-326 63-111 (239)
148 KOG3564 GTPase-activating prot 27.5 1.8E+02 0.0039 31.7 6.8 43 275-317 62-104 (604)
149 KOG4001 Axonemal dynein light 27.3 1.6E+02 0.0034 28.9 5.8 45 269-319 199-243 (259)
150 PRK14158 heat shock protein Gr 27.2 1.6E+02 0.0035 27.9 5.9 43 269-311 40-86 (194)
151 PF09738 DUF2051: Double stran 27.0 2.1E+02 0.0045 29.0 6.9 26 267-292 110-135 (302)
152 PF10393 Matrilin_ccoil: Trime 27.0 1.2E+02 0.0026 22.8 4.0 30 263-292 17-46 (47)
153 PF08112 ATP-synt_E_2: ATP syn 27.0 2E+02 0.0044 22.3 5.3 41 279-322 14-55 (56)
154 COG4372 Uncharacterized protei 26.9 2.5E+02 0.0055 29.9 7.6 58 266-323 78-135 (499)
155 PF09726 Macoilin: Transmembra 26.9 1.5E+02 0.0033 33.2 6.5 62 261-322 417-478 (697)
156 COG4717 Uncharacterized conser 26.6 2.3E+02 0.005 32.9 7.8 73 258-337 177-252 (984)
157 PF08826 DMPK_coil: DMPK coile 26.6 1.6E+02 0.0034 23.1 4.8 35 265-299 21-55 (61)
158 PRK13169 DNA replication intia 26.6 2.7E+02 0.0059 24.2 6.7 51 272-322 4-54 (110)
159 COG5185 HEC1 Protein involved 26.5 1.8E+02 0.004 31.6 6.7 53 267-322 492-544 (622)
160 KOG0971 Microtubule-associated 26.2 2.1E+02 0.0045 33.6 7.4 75 269-343 976-1063(1243)
161 PF08172 CASP_C: CASP C termin 25.8 66 0.0014 31.4 3.2 27 272-298 2-28 (248)
162 PRK03918 chromosome segregatio 25.8 1.6E+02 0.0036 32.5 6.6 37 281-317 396-432 (880)
163 PF00553 CBM_2: Cellulose bind 25.8 1.4E+02 0.0031 24.5 4.8 53 21-73 13-85 (101)
164 PRK02201 putative inner membra 25.7 88 0.0019 32.3 4.1 40 269-319 160-199 (357)
165 PF14817 HAUS5: HAUS augmin-li 25.6 2.7E+02 0.0058 31.0 8.0 71 265-335 82-152 (632)
166 PF06160 EzrA: Septation ring 25.6 2.6E+02 0.0056 30.2 7.8 69 259-327 369-437 (560)
167 PF00038 Filament: Intermediat 25.6 3.1E+02 0.0067 26.5 7.8 61 267-327 221-285 (312)
168 PF12443 AKNA: AT-hook-contain 25.6 89 0.0019 27.2 3.5 39 284-329 46-84 (106)
169 PF06548 Kinesin-related: Kine 25.5 1.3E+02 0.0028 32.3 5.4 65 256-320 379-471 (488)
170 PRK14143 heat shock protein Gr 25.4 1.7E+02 0.0038 28.5 5.9 44 268-311 66-113 (238)
171 PF04012 PspA_IM30: PspA/IM30 25.4 2.7E+02 0.0058 25.8 7.0 44 279-322 26-69 (221)
172 KOG3863 bZIP transcription fac 25.4 1.5E+02 0.0033 32.8 6.0 66 257-323 459-551 (604)
173 KOG0996 Structural maintenance 25.3 1.9E+02 0.0042 34.5 7.1 75 267-341 519-614 (1293)
174 PF07888 CALCOCO1: Calcium bin 25.3 2.5E+02 0.0054 30.8 7.6 66 267-332 162-234 (546)
175 PF10186 Atg14: UV radiation r 25.3 2.4E+02 0.0052 26.6 6.8 50 272-321 59-108 (302)
176 PRK03992 proteasome-activating 25.1 1.8E+02 0.0038 29.7 6.2 45 273-317 5-49 (389)
177 KOG1962 B-cell receptor-associ 24.8 2.4E+02 0.0052 27.4 6.7 39 281-319 149-187 (216)
178 PF13815 Dzip-like_N: Iguana/D 24.6 2.2E+02 0.0047 24.4 5.8 31 269-299 80-110 (118)
179 PF13094 CENP-Q: CENP-Q, a CEN 24.5 2.9E+02 0.0064 24.5 6.8 52 261-312 33-84 (160)
180 TIGR02745 ccoG_rdxA_fixG cytoc 24.4 6.8E+02 0.015 26.5 10.4 51 23-73 348-400 (434)
181 PF10779 XhlA: Haemolysin XhlA 24.4 2.7E+02 0.0059 21.7 5.9 24 272-295 2-25 (71)
182 PRK14145 heat shock protein Gr 24.4 1.6E+02 0.0035 28.0 5.3 46 267-312 43-92 (196)
183 PF11559 ADIP: Afadin- and alp 24.3 4.8E+02 0.01 22.8 8.1 46 273-318 56-101 (151)
184 TIGR01843 type_I_hlyD type I s 23.8 2.6E+02 0.0056 27.7 6.9 32 267-298 208-239 (423)
185 KOG1962 B-cell receptor-associ 23.8 2.8E+02 0.0061 26.9 6.9 57 267-323 156-212 (216)
186 PF04111 APG6: Autophagy prote 23.8 3.7E+02 0.008 27.0 8.1 38 281-318 76-113 (314)
187 PTZ00454 26S protease regulato 23.7 2E+02 0.0043 29.7 6.3 43 276-318 22-64 (398)
188 PF03961 DUF342: Protein of un 23.4 3.5E+02 0.0075 28.1 8.1 62 262-323 334-408 (451)
189 PF00521 DNA_topoisoIV: DNA gy 23.3 3.1E+02 0.0068 28.4 7.7 63 260-322 317-409 (426)
190 PF14966 DNA_repr_REX1B: DNA r 23.2 2.1E+02 0.0045 24.1 5.2 40 265-310 43-88 (97)
191 PF01920 Prefoldin_2: Prefoldi 23.1 2.1E+02 0.0046 22.9 5.2 48 251-298 49-98 (106)
192 smart00338 BRLZ basic region l 23.1 2.4E+02 0.0052 21.3 5.2 36 277-312 27-62 (65)
193 PTZ00454 26S protease regulato 23.0 1.9E+02 0.0042 29.9 6.1 47 277-323 16-62 (398)
194 PF11598 COMP: Cartilage oligo 22.9 2.4E+02 0.0052 21.0 4.9 35 283-324 8-42 (45)
195 PF12329 TMF_DNA_bd: TATA elem 22.8 4E+02 0.0086 21.3 6.8 52 259-317 9-60 (74)
196 TIGR02132 phaR_Bmeg polyhydrox 22.8 4E+02 0.0087 25.4 7.5 61 259-320 70-130 (189)
197 PF05753 TRAP_beta: Translocon 22.7 3.6E+02 0.0079 25.1 7.3 54 19-73 36-98 (181)
198 COG4942 Membrane-bound metallo 22.5 3.7E+02 0.008 28.6 8.0 56 265-320 41-103 (420)
199 PF02403 Seryl_tRNA_N: Seryl-t 22.3 2.2E+02 0.0047 23.4 5.2 29 292-320 31-59 (108)
200 PRK14160 heat shock protein Gr 22.1 2.7E+02 0.0059 26.8 6.4 52 260-311 52-107 (211)
201 PF07246 Phlebovirus_NSM: Phle 22.1 2.3E+02 0.0049 28.4 6.0 38 285-322 204-241 (264)
202 KOG1899 LAR transmembrane tyro 21.7 2E+02 0.0043 32.4 6.0 34 263-296 175-215 (861)
203 COG4026 Uncharacterized protei 21.6 3.5E+02 0.0076 26.9 7.1 54 271-324 151-204 (290)
204 TIGR01000 bacteriocin_acc bact 21.3 3.8E+02 0.0082 27.8 7.8 55 268-322 242-309 (457)
205 PRK05771 V-type ATP synthase s 21.2 2.7E+02 0.0058 30.3 7.0 49 267-315 213-262 (646)
206 TIGR01069 mutS2 MutS2 family p 21.1 3.7E+02 0.0081 30.4 8.2 31 272-302 525-555 (771)
207 smart00637 CBD_II CBD_II domai 21.0 3.5E+02 0.0076 21.5 6.1 48 23-70 8-75 (92)
208 PRK04778 septation ring format 20.8 3.7E+02 0.0079 29.0 7.8 61 265-325 379-439 (569)
209 smart00787 Spc7 Spc7 kinetocho 20.6 4.6E+02 0.01 26.4 8.1 14 305-318 247-260 (312)
210 PF10211 Ax_dynein_light: Axon 20.6 4.7E+02 0.01 24.3 7.6 57 266-322 124-181 (189)
211 PF02183 HALZ: Homeobox associ 20.6 1.8E+02 0.0038 21.4 3.8 41 267-321 3-43 (45)
212 PRK14139 heat shock protein Gr 20.5 2.4E+02 0.0053 26.5 5.7 43 270-312 33-79 (185)
213 KOG0978 E3 ubiquitin ligase in 20.5 3.2E+02 0.0069 30.9 7.4 55 267-321 564-618 (698)
214 PRK14161 heat shock protein Gr 20.5 3.7E+02 0.0081 25.0 6.8 45 267-311 17-65 (178)
215 PF02403 Seryl_tRNA_N: Seryl-t 20.4 1.8E+02 0.004 23.9 4.4 53 268-324 35-87 (108)
216 PF08702 Fib_alpha: Fibrinogen 20.3 2.4E+02 0.0053 25.3 5.4 41 261-301 28-68 (146)
217 PRK14151 heat shock protein Gr 20.3 2.1E+02 0.0046 26.5 5.2 42 270-311 21-66 (176)
218 PRK06663 flagellar hook-associ 20.1 2.8E+02 0.0061 28.7 6.6 57 265-321 61-123 (419)
219 PRK06569 F0F1 ATP synthase sub 20.0 5.4E+02 0.012 23.6 7.7 84 267-352 46-138 (155)
No 1
>COG5066 SCS2 VAMP-associated protein involved in inositol metabolism [Intracellular trafficking and secretion]
Probab=99.92 E-value=3.7e-25 Score=205.63 Aligned_cols=121 Identities=35% Similarity=0.617 Sum_probs=111.1
Q ss_pred eEEeCCeeEEeeecCCeeEEEEEEEcCCCCeEEEEEecCCCCceeecCCceeeCCCCeEEEEEEeccCccCC-CCCCCCC
Q 017690 6 LDIQPLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKPKAISDFTVTMQAQRVAP-PDLQCKD 84 (367)
Q Consensus 6 L~IdP~EL~F~~p~~k~~s~tLtLtN~S~~~VAFKVKTTaPkrY~VRPn~GvI~Pgesv~I~VtLqp~~~~P-pd~k~kD 84 (367)
|.++|. +.|..|+.+..++.+-|.|++.++|+||||||+|+.||||||.|+|.|++++.|.|++|+++++| +|++|+|
T Consensus 3 veisp~-~~fy~Plt~~ske~~sv~NnspepvgfKVKTTaPK~YcVRPN~g~Iep~stv~VeVilq~l~eEpapdfKCrd 81 (242)
T COG5066 3 VEISPQ-TTFYVPLTNKSKEMFSVQNNSPEPVGFKVKTTAPKDYCVRPNMGLIEPMSTVEVEVILQGLTEEPAPDFKCRD 81 (242)
T ss_pred eEecCc-eEEecccccccceeeEeecCCCCceeEEeeccCCcceeEcCCCceeccCCeeEEEEEeeccccCCCCCccccc
Confidence 567776 57777999999999999999999999999999999999999999999999999999999999887 5999999
Q ss_pred eEEEEEEEeCCCCCcchhhhHhhcccCCCceeEEEeEEEEeCCC
Q 017690 85 KFLIQGIVVPFGTSDEDITSDMFAKDSGKYVEEKKLRVILMSPP 128 (367)
Q Consensus 85 KFLVQS~~Vp~g~td~Di~~e~Wkk~~k~~I~e~KLrV~fv~~~ 128 (367)
|||||++..+...+..|+ .++|+..++..|.++||+|+|....
T Consensus 82 KFLiqs~~~~~~l~g~d~-ad~wt~~sk~~i~~rkIrcvyse~~ 124 (242)
T COG5066 82 KFLIQSYRFDWRLSGSDF-ADHWTSSSKKPIWTRKIRCVYSEEE 124 (242)
T ss_pred eeEEEEeccChhhccchH-HHHHHhhccccchhhheeEEeeccc
Confidence 999999999988777888 5899999999999999999998543
No 2
>KOG0439 consensus VAMP-associated protein involved in inositol metabolism [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=7.1e-24 Score=194.10 Aligned_cols=130 Identities=39% Similarity=0.656 Sum_probs=116.1
Q ss_pred CCceEEeC-CeeEEeeecCCeeEEEEEEEcCCCCeEEEEEecCCCCceeecCCceeeCCCCeEEEEEEeccCccCCCCCC
Q 017690 3 EELLDIQP-LELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKPKAISDFTVTMQAQRVAPPDLQ 81 (367)
Q Consensus 3 s~LL~IdP-~EL~F~~p~~k~~s~tLtLtN~S~~~VAFKVKTTaPkrY~VRPn~GvI~Pgesv~I~VtLqp~~~~Ppd~k 81 (367)
..++.|.| .+|.|.+++..+..+.|+|+|+++.++|||||||+|++|+||||.|+|.||+++.|.|.+|+....|.|++
T Consensus 6 ~~~l~i~P~~~l~F~~~~~~~~~~~l~l~N~t~~~vaFKvktT~p~~y~VrP~~G~i~p~~t~~i~v~~q~~~~~P~d~~ 85 (218)
T KOG0439|consen 6 ESLLEIEPSDELVFPLPLNEQVKCSLTLKNPTKLRVAFKVKTTAPKLYCVRPNGGVIDPGSTVEIEVTHQPFEKSPPDFK 85 (218)
T ss_pred cCccccCCCceEEeccCCCceEEEEEEEecCCCCceEEEEEcCCCCeEEEcCCcceECCCCcEEEEEEeccCccCchhhc
Confidence 47899999 58999999998899999999999999999999999999999999999999999999999999888888989
Q ss_pred CCCeEEEEEEEeCCCCCcchhhhHhhcccC--CCceeEEEeEEEEeCCCCCCCcC
Q 017690 82 CKDKFLIQGIVVPFGTSDEDITSDMFAKDS--GKYVEEKKLRVILMSPPQSPVLL 134 (367)
Q Consensus 82 ~kDKFLVQS~~Vp~g~td~Di~~e~Wkk~~--k~~I~e~KLrV~fv~~~~s~~~~ 134 (367)
++|||+||++.++.+ +..+ ..+.|.... +..+.+.+++|.|+.+..+....
T Consensus 86 ~r~kF~v~~~~~~~~-~~~~-~~~~~~~~k~~~~~~~~~k~~~~~~~~~~~~~~~ 138 (218)
T KOG0439|consen 86 SRHKFLIQSLKAPPP-TTRD-VVDLWKFQKETPKESFETKLRVVFVAPTETDSVV 138 (218)
T ss_pred ccceEEEEEEecCCc-cccc-hhhhccccccccccccceeeEEEeeCCCCCcccc
Confidence 999999999999876 2233 357898877 88999999999999887764443
No 3
>PF00635 Motile_Sperm: MSP (Major sperm protein) domain; InterPro: IPR000535 Major sperm proteins (MSP) are central components in molecular interactions underlying sperm motility in Caenorhabditis elegans, whose sperm employ an amoebae-like crawling motion using a MSP-containing lamellipod, rather than the flagellar-based swimming motion associated with other sperm. These proteins oligomerise to form an extensive filament system that extends from sperm villipoda, along the leading edge of the pseudopod. About 30 MSP isoforms may exist in C. elegans. MSPs form a fibrous network, whereby MSP dimers form helical subfilaments that coil around one another to produce filaments, which in turn form supercoils to produce bundles. The crystal structure of MSP from C. elegans reveals an immunoglobulin (Ig)-like seven-stranded beta sandwich fold []. ; GO: 0005198 structural molecule activity; PDB: 1MSP_A 3MSP_B 2BVU_B 2MSP_C 1Z9O_F 1Z9L_A 3IKK_A 1WIC_A 2CRI_A 2RR3_A ....
Probab=99.87 E-value=1.1e-21 Score=159.92 Aligned_cols=104 Identities=38% Similarity=0.623 Sum_probs=84.6
Q ss_pred eEEeCC-eeEEeeecCCeeEEEEEEEcCCCCeEEEEEecCCCCceeecCCceeeCCCCeEEEEEEeccCccCCCCCCCCC
Q 017690 6 LDIQPL-ELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKPKAISDFTVTMQAQRVAPPDLQCKD 84 (367)
Q Consensus 6 L~IdP~-EL~F~~p~~k~~s~tLtLtN~S~~~VAFKVKTTaPkrY~VRPn~GvI~Pgesv~I~VtLqp~~~~Ppd~k~kD 84 (367)
|.|+|. .|.|.+++++...+.|+|+|+++.+||||||||+|.+|+|+|+.|+|.||+++.|.|++++....+.. ..+|
T Consensus 2 l~v~P~~~i~F~~~~~~~~~~~l~l~N~s~~~i~fKiktt~~~~y~v~P~~G~i~p~~~~~i~I~~~~~~~~~~~-~~~d 80 (109)
T PF00635_consen 2 LSVEPSELIFFNAPFNKQQSCELTLTNPSDKPIAFKIKTTNPNRYRVKPSYGIIEPGESVEITITFQPFDFEPSN-KKKD 80 (109)
T ss_dssp CEEESSSEEEEESSTSS-EEEEEEEEE-SSSEEEEEEEES-TTTEEEESSEEEE-TTEEEEEEEEE-SSSTTTTS-TSSE
T ss_pred eEEeCCcceEEcCCCCceEEEEEEEECCCCCcEEEEEEcCCCceEEecCCCEEECCCCEEEEEEEEEecccCCCC-CCCC
Confidence 789998 69999999999999999999999999999999999999999999999999999999999998765532 2399
Q ss_pred eEEEEEEEeCCCCCcc-hhhhHhhccc
Q 017690 85 KFLIQGIVVPFGTSDE-DITSDMFAKD 110 (367)
Q Consensus 85 KFLVQS~~Vp~g~td~-Di~~e~Wkk~ 110 (367)
||+|+++.++++..+. +....+|++.
T Consensus 81 kf~I~~~~~~~~~~~~~~~~~~~~~~~ 107 (109)
T PF00635_consen 81 KFLIQSIVVPDNATDPKKDFKQIWKNG 107 (109)
T ss_dssp EEEEEEEEE-TT-SSSHHHHHCCHHHS
T ss_pred EEEEEEEEcCCCccchhhhHHHHHhcc
Confidence 9999999998775433 4456788765
No 4
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=98.43 E-value=2.9e-06 Score=68.94 Aligned_cols=70 Identities=23% Similarity=0.368 Sum_probs=61.4
Q ss_pred CceEEeCCeeEEee-ecCCeeEEEEEEEcCCCCeEEEEEecCC--CCceeecCCceeeCCCCeEEEEEEeccC
Q 017690 4 ELLDIQPLELKFTF-EVKKQSTCVIQLGNKSDQCVAFKVKTTS--PKKYCVRPNVSIIKPKAISDFTVTMQAQ 73 (367)
Q Consensus 4 ~LL~IdP~EL~F~~-p~~k~~s~tLtLtN~S~~~VAFKVKTTa--PkrY~VRPn~GvI~Pgesv~I~VtLqp~ 73 (367)
+.|.++|.+|.|-. ..+......++|+|.+..+..|+|+.-. ...|.|.|..|+|.||++..+.|++.+.
T Consensus 2 P~l~v~P~~ldFG~v~~g~~~~~~v~l~N~s~~p~~f~v~~~~~~~~~~~v~~~~g~l~PG~~~~~~V~~~~~ 74 (102)
T PF14874_consen 2 PTLEVSPKELDFGNVFVGQTYSRTVTLTNTSSIPARFRVRQPESLSSFFSVEPPSGFLAPGESVELEVTFSPT 74 (102)
T ss_pred CEEEEeCCEEEeeEEccCCEEEEEEEEEECCCCCEEEEEEeCCcCCCCEEEECCCCEECCCCEEEEEEEEEeC
Confidence 46899999999976 5567778999999999999999997643 5689999999999999999999999954
No 5
>PF00345 PapD_N: Pili and flagellar-assembly chaperone, PapD N-terminal domain; InterPro: IPR016147 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors. Many interactive subunits are required to assemble pili, but their assembly only takes place after translocation across the cytoplasmic membrane. Periplasmic chaperones assist pili assembly by binding to the subunits, thereby preventing premature aggregation [, ]. Pili chaperones are structurally, and possibly evolutionarily, related to the immunoglobulin superfamily [, ]: they contain two globular domains, with a topology identical to an immunoglobulin fold. This entry represents the N-terminal domain of pili assembly chaperone, and has a beta-sandwich fold consisting of seven strands in two sheets with a Greek key topology.; GO: 0007047 cellular cell wall organization, 0030288 outer membrane-bounded periplasmic space; PDB: 2CO6_B 2CO7_B 1L4I_B 3GFU_A 3F65_F 3F6L_A 3F6I_A 3GEW_B 3DSN_D 2OS7_B ....
Probab=96.18 E-value=0.042 Score=46.19 Aligned_cols=83 Identities=20% Similarity=0.279 Sum_probs=60.9
Q ss_pred eEEeCCeeEEeeecCCeeEEEEEEEcCCCCeEEEEEecCC---C------CceeecCCceeeCCCCeEEEEEEeccCccC
Q 017690 6 LDIQPLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTS---P------KKYCVRPNVSIIKPKAISDFTVTMQAQRVA 76 (367)
Q Consensus 6 L~IdP~EL~F~~p~~k~~s~tLtLtN~S~~~VAFKVKTTa---P------krY~VRPn~GvI~Pgesv~I~VtLqp~~~~ 76 (367)
|.|+|.-+.|.. +.....++|+|.++.++.+.+.... . ..|.|.|+.-.|+||+...|.| +... ..
T Consensus 2 i~i~~trii~~~---~~~~~~i~v~N~~~~~~~vq~~v~~~~~~~~~~~~~~~~vsPp~~~L~pg~~q~vRv-~~~~-~~ 76 (122)
T PF00345_consen 2 IQISPTRIIFNE---SQRSASITVTNNSDQPYLVQVWVYDQDDEDEDEPTDPFIVSPPIFRLEPGESQTVRV-YRGS-KL 76 (122)
T ss_dssp EEESSSEEEEET---TSSEEEEEEEESSSSEEEEEEEEEETTSTTSSSSSSSEEEESSEEEEETTEEEEEEE-EECS-GS
T ss_pred EEEccEEEEEeC---CCCEEEEEEEcCCCCcEEEEEEEEcCCCcccccccccEEEeCCceEeCCCCcEEEEE-EecC-CC
Confidence 578888888886 3447899999999999999986654 1 2689999999999999999999 4433 22
Q ss_pred CCCCCCCCeEEEEEEEeCC
Q 017690 77 PPDLQCKDKFLIQGIVVPF 95 (367)
Q Consensus 77 Ppd~k~kDKFLVQS~~Vp~ 95 (367)
+.+ .-..|.+....+|.
T Consensus 77 ~~~--~E~~yrl~~~~iP~ 93 (122)
T PF00345_consen 77 PID--RESLYRLSFREIPP 93 (122)
T ss_dssp -SS--S-EEEEEEEEEEES
T ss_pred CCC--ceEEEEEEEEEEec
Confidence 323 23455666666654
No 6
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=91.96 E-value=0.63 Score=36.62 Aligned_cols=51 Identities=20% Similarity=0.236 Sum_probs=44.1
Q ss_pred HHHHHhhhhhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhcc
Q 017690 274 LKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELVSFFNYILSCH 324 (367)
Q Consensus 274 lk~kL~~leskL~ea~~~i~kl~ee~r~~~~erd~l~~e~~~l~~~~~~~~ 324 (367)
|..+|..||+||--.+.+|..|++.-..-.++=|.|+.++..|+.++.+..
T Consensus 2 le~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 2 LEERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 678899999999999999999999999999999999999999999998754
No 7
>PF14646 MYCBPAP: MYCBP-associated protein family
Probab=91.93 E-value=0.69 Score=47.50 Aligned_cols=75 Identities=12% Similarity=0.327 Sum_probs=58.5
Q ss_pred eeEEeeecCCeeEEEEE-EEcCCCCeEEEEEecCC------------CCceeecCCceeeCCCCeEEEEEEeccCccCCC
Q 017690 12 ELKFTFEVKKQSTCVIQ-LGNKSDQCVAFKVKTTS------------PKKYCVRPNVSIIKPKAISDFTVTMQAQRVAPP 78 (367)
Q Consensus 12 EL~F~~p~~k~~s~tLt-LtN~S~~~VAFKVKTTa------------PkrY~VRPn~GvI~Pgesv~I~VtLqp~~~~Pp 78 (367)
.|.|....+......|. |.|.+...|-|..+--. ...|......|+|.||++..|.|++++....
T Consensus 238 ~l~Fe~~p~e~~~~~v~~l~N~Gt~~I~y~W~~~~~~~~~~~~~~~~~~~F~Fd~~~gvilPGe~~~~~~~F~s~~~G-- 315 (426)
T PF14646_consen 238 RLTFECHPGERVSKEVVRLENNGTTAIYYSWRRVPFFKNFGSLFRAQDQRFYFDTSSGVILPGETRNFPFMFKSRKVG-- 315 (426)
T ss_pred EEEEEcccCceeeEEEEEEecCCceEEEEEEEecccccccchhccccCCeEEEeCCCCEECCCceEEEEEEEeCCCce--
Confidence 58999988777777777 99999999999965432 4568888999999999999999999976532
Q ss_pred CCCCCCeEEEEE
Q 017690 79 DLQCKDKFLIQG 90 (367)
Q Consensus 79 d~k~kDKFLVQS 90 (367)
..+....+.+
T Consensus 316 --if~E~W~L~t 325 (426)
T PF14646_consen 316 --IFKERWELRT 325 (426)
T ss_pred --EEEEEEEEEE
Confidence 2345555554
No 8
>PRK04325 hypothetical protein; Provisional
Probab=91.35 E-value=0.8 Score=36.74 Aligned_cols=56 Identities=16% Similarity=0.240 Sum_probs=50.0
Q ss_pred hhHHHHHHHHhhhhhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhcc
Q 017690 269 KDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELVSFFNYILSCH 324 (367)
Q Consensus 269 ~d~~~lk~kL~~leskL~ea~~~i~kl~ee~r~~~~erd~l~~e~~~l~~~~~~~~ 324 (367)
.+.+.|..++..||+||---|.||..|++.=-.--++=+.|+..|..|.+++.+..
T Consensus 2 ~~~~~~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~~~ 57 (74)
T PRK04325 2 DAVQEMEDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRDAN 57 (74)
T ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35677888999999999999999999999988888888999999999999887654
No 9
>PRK04406 hypothetical protein; Provisional
Probab=91.19 E-value=1.1 Score=36.28 Aligned_cols=55 Identities=18% Similarity=0.218 Sum_probs=49.3
Q ss_pred hHHHHHHHHhhhhhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhcc
Q 017690 270 DFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELVSFFNYILSCH 324 (367)
Q Consensus 270 d~~~lk~kL~~leskL~ea~~~i~kl~ee~r~~~~erd~l~~e~~~l~~~~~~~~ 324 (367)
-.++|..++..||+||---+.+|..|++.=-.--++=|.|+.+|..|++++.+..
T Consensus 5 ~~~~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 59 (75)
T PRK04406 5 TIEQLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKNMD 59 (75)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3457999999999999999999999999998888899999999999999886643
No 10
>PRK09918 putative fimbrial chaperone protein; Provisional
Probab=90.29 E-value=2.2 Score=40.60 Aligned_cols=83 Identities=12% Similarity=0.111 Sum_probs=59.8
Q ss_pred eEEeCCeeEEeeecCCeeEEEEEEEcCCCCeEEEEEecCCC-----CceeecCCceeeCCCCeEEEEEEeccCccCCCCC
Q 017690 6 LDIQPLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSP-----KKYCVRPNVSIIKPKAISDFTVTMQAQRVAPPDL 80 (367)
Q Consensus 6 L~IdP~EL~F~~p~~k~~s~tLtLtN~S~~~VAFKVKTTaP-----krY~VRPn~GvI~Pgesv~I~VtLqp~~~~Ppd~ 80 (367)
|.+.|..+.|... ....+++|+|.++.++......... .-|.|.|+.-.|+||+...|.|.+... .|.|.
T Consensus 26 v~l~~tRvi~~~~---~~~~si~v~N~~~~p~lvQ~wv~~~~~~~~~~fivtPPl~rl~pg~~q~vRii~~~~--lp~dr 100 (230)
T PRK09918 26 MVPETSVVIVEES---DGEGSINVKNTDSNPILLYTTLVDLPEDKSKLLLVTPPVARVEPGQSQQVRFILKSG--SPLNT 100 (230)
T ss_pred EEEccEEEEEECC---CCeEEEEEEcCCCCcEEEEEEEecCCCCCCCCEEEcCCeEEECCCCceEEEEEECCC--CCCCe
Confidence 5677777888863 4468999999998877666544321 359999999999999999999998742 34332
Q ss_pred CCCCeEEEEEEEeCC
Q 017690 81 QCKDKFLIQGIVVPF 95 (367)
Q Consensus 81 k~kDKFLVQS~~Vp~ 95 (367)
---|.+....+|+
T Consensus 101 --Es~f~l~v~~IP~ 113 (230)
T PRK09918 101 --EHLLRVSFEGVPP 113 (230)
T ss_pred --eEEEEEEEEEcCC
Confidence 2336666666764
No 11
>PRK00846 hypothetical protein; Provisional
Probab=89.88 E-value=1.4 Score=36.08 Aligned_cols=51 Identities=16% Similarity=0.132 Sum_probs=47.1
Q ss_pred HHHHHHHhhhhhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhh
Q 017690 272 EELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELVSFFNYILS 322 (367)
Q Consensus 272 ~~lk~kL~~leskL~ea~~~i~kl~ee~r~~~~erd~l~~e~~~l~~~~~~ 322 (367)
++|..+|..||+||--.+.+|..|++.--.--++=|.|+..|..|+.++..
T Consensus 9 ~~le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~ 59 (77)
T PRK00846 9 QALEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGK 59 (77)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568899999999999999999999999988888999999999999988765
No 12
>PRK09926 putative chaperone protein EcpD; Provisional
Probab=88.93 E-value=3.1 Score=40.04 Aligned_cols=86 Identities=20% Similarity=0.258 Sum_probs=61.9
Q ss_pred ceEEeCCeeEEeeecCCeeEEEEEEEcCCCCeEEEEEecCCCC----------ceeecCCceeeCCCCeEEEEEEeccCc
Q 017690 5 LLDIQPLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPK----------KYCVRPNVSIIKPKAISDFTVTMQAQR 74 (367)
Q Consensus 5 LL~IdP~EL~F~~p~~k~~s~tLtLtN~S~~~VAFKVKTTaPk----------rY~VRPn~GvI~Pgesv~I~VtLqp~~ 74 (367)
-|.++|.-+.|... ....+++|.|.++.++..-......+ -|.|-|+.-.|+||+...|.|...+..
T Consensus 26 ~i~l~~TRvI~~~~---~~~~sv~l~N~~~~p~LvQ~Wvd~~~~~~~p~~~~~pfivtPPl~rl~p~~~q~lRIi~~~~~ 102 (246)
T PRK09926 26 DIVISGTRIIYKSD---QKDVNVRLENKGNNPLLVQSWLDTGDDNAEPGSIKVPFTATPPVSRIDPKRGQTIKLMYTAST 102 (246)
T ss_pred eEEeCceEEEEeCC---CceEEEEEEeCCCCcEEEEEEecCCCCccCccccCCCEEEcCCeEEECCCCccEEEEEeCCCC
Confidence 46777878888863 44689999999988877666554211 399999999999999999999987532
Q ss_pred cCCCCCCCCCeEEEEEEEeCC
Q 017690 75 VAPPDLQCKDKFLIQGIVVPF 95 (367)
Q Consensus 75 ~~Ppd~k~kDKFLVQS~~Vp~ 95 (367)
..|.|.. --|.+....+|+
T Consensus 103 ~lP~DrE--Slf~lnv~eIP~ 121 (246)
T PRK09926 103 ALPKDRE--SVFWFNVLEVPP 121 (246)
T ss_pred CCCCCce--EEEEEEeeecCC
Confidence 3444322 236666666665
No 13
>PRK02119 hypothetical protein; Provisional
Probab=88.42 E-value=2.3 Score=34.11 Aligned_cols=54 Identities=13% Similarity=0.116 Sum_probs=48.4
Q ss_pred HHHHHHHHhhhhhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhcc
Q 017690 271 FEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELVSFFNYILSCH 324 (367)
Q Consensus 271 ~~~lk~kL~~leskL~ea~~~i~kl~ee~r~~~~erd~l~~e~~~l~~~~~~~~ 324 (367)
...|..++..||.|+---|.+|..|++.=-.--++=|.|+.+|..|+.++....
T Consensus 4 ~~~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~~ 57 (73)
T PRK02119 4 QQNLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKDMQ 57 (73)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 456889999999999999999999999988888888999999999999887644
No 14
>PRK15249 fimbrial chaperone protein StbB; Provisional
Probab=88.42 E-value=3.3 Score=40.10 Aligned_cols=86 Identities=21% Similarity=0.225 Sum_probs=59.7
Q ss_pred ceEEeCCeeEEeeecCCeeEEEEEEEcCCCCeEEEEEecCC------C-----CceeecCCceeeCCCCeEEEEEEeccC
Q 017690 5 LLDIQPLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTS------P-----KKYCVRPNVSIIKPKAISDFTVTMQAQ 73 (367)
Q Consensus 5 LL~IdP~EL~F~~p~~k~~s~tLtLtN~S~~~VAFKVKTTa------P-----krY~VRPn~GvI~Pgesv~I~VtLqp~ 73 (367)
-|.|+|.-+.|... .....|+|.|.++.++.....+.. | .-|.|.|+.-.|+||+...|.|...+.
T Consensus 29 ~l~l~~TRviy~~~---~~~~sl~l~N~~~~p~LvQsWv~~~~~~~~p~~~~~~pFivtPPlfrl~p~~~q~lRI~~~~~ 105 (253)
T PRK15249 29 SVTILGSRIIYPST---ASSVDVQLKNNDAIPYIVQTWFDDGDMNTSPENSSAMPFIATPPVFRIQPKAGQVVRVIYNNT 105 (253)
T ss_pred EEEeCceEEEEeCC---CcceeEEEEcCCCCcEEEEEEEeCCCCCCCccccccCcEEEcCCeEEecCCCceEEEEEEcCC
Confidence 36778888888763 346899999998887665554321 1 139999999999999999999998743
Q ss_pred ccCCCCCCCCCeEEEEEEEeCC
Q 017690 74 RVAPPDLQCKDKFLIQGIVVPF 95 (367)
Q Consensus 74 ~~~Ppd~k~kDKFLVQS~~Vp~ 95 (367)
...|.|.. --|.+....+|+
T Consensus 106 ~~lP~DRE--Slf~lnv~eIP~ 125 (253)
T PRK15249 106 KKLPQDRE--SVFWFNVLQVPP 125 (253)
T ss_pred CCCCCCce--EEEEEEeeecCC
Confidence 23444422 235555556665
No 15
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.52 E-value=2 Score=42.36 Aligned_cols=76 Identities=18% Similarity=0.210 Sum_probs=64.5
Q ss_pred ccccccccCCchhHHHHhHHhhHHHHHHHHhhhhhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhcc
Q 017690 249 PAEDASELKPAKDILELKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELVSFFNYILSCH 324 (367)
Q Consensus 249 ~~~~~~~l~~~~~~~~~~~~~d~~~lk~kL~~leskL~ea~~~i~kl~ee~r~~~~erd~l~~e~~~l~~~~~~~~ 324 (367)
.+..++|....+|--+.++.++.+++..+|.-|+.+.++.-.-|..++++---+-.|=.+||+|+..++..|.+|-
T Consensus 25 ~a~~~~~~i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~ 100 (265)
T COG3883 25 FAALLSDKIQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQ 100 (265)
T ss_pred hhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777677778888889999999999999999999999999999988888888888888888888888887763
No 16
>PRK02793 phi X174 lysis protein; Provisional
Probab=87.49 E-value=2.6 Score=33.66 Aligned_cols=52 Identities=21% Similarity=0.201 Sum_probs=47.3
Q ss_pred HHHHHHhhhhhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhcc
Q 017690 273 ELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELVSFFNYILSCH 324 (367)
Q Consensus 273 ~lk~kL~~leskL~ea~~~i~kl~ee~r~~~~erd~l~~e~~~l~~~~~~~~ 324 (367)
+|..+|..||.||--.+.+|..|++.=-.--++=|.|+.+|..|..++.+..
T Consensus 5 ~~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 56 (72)
T PRK02793 5 SLEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKASQ 56 (72)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4788999999999999999999999988888888999999999999887754
No 17
>PRK00736 hypothetical protein; Provisional
Probab=86.73 E-value=2.8 Score=33.13 Aligned_cols=51 Identities=18% Similarity=0.248 Sum_probs=45.3
Q ss_pred HHHHHhhhhhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhcc
Q 017690 274 LKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELVSFFNYILSCH 324 (367)
Q Consensus 274 lk~kL~~leskL~ea~~~i~kl~ee~r~~~~erd~l~~e~~~l~~~~~~~~ 324 (367)
+..++..||.||--.|.+|..|++.=-.--++=|.|+..|..|..++.+..
T Consensus 3 ~e~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00736 3 AEERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLSLE 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 346789999999999999999999988888888999999999999887643
No 18
>PF07610 DUF1573: Protein of unknown function (DUF1573); InterPro: IPR011467 These hypothetical proteins from bacteria, such as Rhodopirellula baltica, Bacteroides thetaiotaomicron and Porphyromonas gingivalis, share a region of conserved sequence towards their N termini.
Probab=86.18 E-value=2.8 Score=30.20 Aligned_cols=43 Identities=19% Similarity=0.146 Sum_probs=34.7
Q ss_pred EEEEcCCCCeE-EEEEecCCCCceeecCCceeeCCCCeEEEEEEe
Q 017690 27 IQLGNKSDQCV-AFKVKTTSPKKYCVRPNVSIIKPKAISDFTVTM 70 (367)
Q Consensus 27 LtLtN~S~~~V-AFKVKTTaPkrY~VRPn~GvI~Pgesv~I~VtL 70 (367)
++++|.++.++ ..+|+|+ =+...+......|.||++..|.|++
T Consensus 2 F~~~N~g~~~L~I~~v~ts-CgCt~~~~~~~~i~PGes~~i~v~y 45 (45)
T PF07610_consen 2 FEFTNTGDSPLVITDVQTS-CGCTTAEYSKKPIAPGESGKIKVTY 45 (45)
T ss_pred EEEEECCCCcEEEEEeeEc-cCCEEeeCCcceECCCCEEEEEEEC
Confidence 67899987654 4667665 5778888888999999999999874
No 19
>PRK00295 hypothetical protein; Provisional
Probab=86.04 E-value=3.2 Score=32.80 Aligned_cols=51 Identities=14% Similarity=0.148 Sum_probs=45.7
Q ss_pred HHHHHhhhhhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhcc
Q 017690 274 LKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELVSFFNYILSCH 324 (367)
Q Consensus 274 lk~kL~~leskL~ea~~~i~kl~ee~r~~~~erd~l~~e~~~l~~~~~~~~ 324 (367)
|..++..||.|+--.|.+|..|++.=-.--++=|.|+..|..|++++....
T Consensus 3 ~e~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00295 3 LEERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEMV 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 556899999999999999999999988888888999999999999887653
No 20
>PRK11385 putativi pili assembly chaperone; Provisional
Probab=85.30 E-value=6.3 Score=37.97 Aligned_cols=85 Identities=18% Similarity=0.252 Sum_probs=58.7
Q ss_pred eEEeCCeeEEeeecCCeeEEEEEEEcCCCCeEEEEEecC------------CCCceeecCCceeeCCCCeEEEEEEeccC
Q 017690 6 LDIQPLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTT------------SPKKYCVRPNVSIIKPKAISDFTVTMQAQ 73 (367)
Q Consensus 6 L~IdP~EL~F~~p~~k~~s~tLtLtN~S~~~VAFKVKTT------------aPkrY~VRPn~GvI~Pgesv~I~VtLqp~ 73 (367)
|.+++.-+.|.. +....+++|.|.++.+..-..... ...-|.|-|+.-.|+||+...+.|.....
T Consensus 28 v~l~~TRvIy~~---~~~~~sv~l~N~~~~p~LvQswv~~~~~~~~~~~~~~~~pFivtPPlfrl~p~~~q~lRIi~~~~ 104 (236)
T PRK11385 28 VVVGGTRFIFPA---DRESISILLTNTSQESWLINSKINRPTRWAGGEASTVPAPLLAAPPLILLKPGTTGTLRLLRTES 104 (236)
T ss_pred EEeCceEEEEcC---CCceEEEEEEeCCCCcEEEEEEcccCccccCcccccccCCEEEcCCeEEECCCCceEEEEEECCC
Confidence 556666788886 345689999999988644333211 11349999999999999999999998753
Q ss_pred ccCCCCCCCCCeEEEEEEEeCC
Q 017690 74 RVAPPDLQCKDKFLIQGIVVPF 95 (367)
Q Consensus 74 ~~~Ppd~k~kDKFLVQS~~Vp~ 95 (367)
...|.|. -.-|-+....+|+
T Consensus 105 ~~LP~DR--ESlf~lnv~~IPp 124 (236)
T PRK11385 105 DILPVDR--ETLFELSIASVPS 124 (236)
T ss_pred CCCCCCc--eEEEEEEEEecCC
Confidence 2345442 2346666667775
No 21
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=85.13 E-value=5.2 Score=36.16 Aligned_cols=74 Identities=16% Similarity=0.117 Sum_probs=64.6
Q ss_pred cCCchhHHHHhHHhhHHHHHHHHhhhhhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhccchhhh
Q 017690 256 LKPAKDILELKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELVSFFNYILSCHYDCLL 329 (367)
Q Consensus 256 l~~~~~~~~~~~~~d~~~lk~kL~~leskL~ea~~~i~kl~ee~r~~~~erd~l~~e~~~l~~~~~~~~~~~~~ 329 (367)
......+++.|+-+....+...+..+...|...+..+.+++++-...-.+|+++......|+..+..-++.-++
T Consensus 71 ~~~~~v~~L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~~~~~~~~P~ll 144 (177)
T PF13870_consen 71 KIGKTVQILTHVKEKLHFLSEELERLKQELKDREEELAKLREELYRVKKERDKLRKQNKKLRQQGGLLGVPALL 144 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHH
Confidence 34455677788889999999999999999999999999999999999999999999999999888876654444
No 22
>PRK15211 fimbrial chaperone protein PefD; Provisional
Probab=84.83 E-value=14 Score=35.43 Aligned_cols=84 Identities=13% Similarity=0.156 Sum_probs=58.3
Q ss_pred eEEeCCeeEEeeecCCeeEEEEEEEcCCCCeEEEEEecCC------CCceeecCCceeeCCCCeEEEEEEeccCccCCCC
Q 017690 6 LDIQPLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTS------PKKYCVRPNVSIIKPKAISDFTVTMQAQRVAPPD 79 (367)
Q Consensus 6 L~IdP~EL~F~~p~~k~~s~tLtLtN~S~~~VAFKVKTTa------PkrY~VRPn~GvI~Pgesv~I~VtLqp~~~~Ppd 79 (367)
|.+++.-+.|... ....+++|.|.++.++.-...... ..-|.|.|+.-.|+||+...|.|...+. ..|.|
T Consensus 24 v~l~~TRvIy~~~---~~~~si~i~N~~~~p~LvQswv~~~~~~~~~~pFivtPPlfrl~p~~~q~lRI~~~~~-~LP~D 99 (229)
T PRK15211 24 FVLNGTRFIYDEG---RKNISFEVTNQADQTYGGQVWIDNTTQGSSTVYMVPAPPFFKVRPKEKQIIRIMKTDS-ALPKD 99 (229)
T ss_pred EEECceEEEEcCC---CceEEEEEEeCCCCcEEEEEEEecCCCCCccCCEEEcCCeEEECCCCceEEEEEECCC-CCCCC
Confidence 5566666788763 346899999999877554433211 1249999999999999999999998753 34444
Q ss_pred CCCCCeEEEEEEEeCC
Q 017690 80 LQCKDKFLIQGIVVPF 95 (367)
Q Consensus 80 ~k~kDKFLVQS~~Vp~ 95 (367)
. -.-|.+....+|+
T Consensus 100 R--ESlf~lnv~~IP~ 113 (229)
T PRK15211 100 R--ESLFWLNVQEIPP 113 (229)
T ss_pred c--eEEEEEEEEEcCC
Confidence 2 2346666666765
No 23
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=84.73 E-value=4.6 Score=32.14 Aligned_cols=55 Identities=18% Similarity=0.173 Sum_probs=43.3
Q ss_pred hhHHHHHHHHhhhhhhhhhhhHHHHHHHHHh-------hhhhHHHHHHHHHHHHHHhhhhhc
Q 017690 269 KDFEELKLKLNVMDSQLREAEHTIRKLMEAR-------KLATREKDMLKHELVSFFNYILSC 323 (367)
Q Consensus 269 ~d~~~lk~kL~~leskL~ea~~~i~kl~ee~-------r~~~~erd~l~~e~~~l~~~~~~~ 323 (367)
.-+.-|..+|..+..|+.--+.....|+-|| ..+..|=++|+.|++.|++.+..+
T Consensus 5 a~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~ 66 (69)
T PF14197_consen 5 AEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEEL 66 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456778888888888888777777788777 456778899999999999986543
No 24
>PRK15246 fimbrial assembly chaperone StbE; Provisional
Probab=84.58 E-value=13 Score=35.75 Aligned_cols=86 Identities=15% Similarity=0.274 Sum_probs=60.3
Q ss_pred ceEEeCCeeEEeeecCCeeEEEEEEEcCCCCeEEEEEecCC------C----CceeecCCceeeCCCCeEEEEEEeccCc
Q 017690 5 LLDIQPLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTS------P----KKYCVRPNVSIIKPKAISDFTVTMQAQR 74 (367)
Q Consensus 5 LL~IdP~EL~F~~p~~k~~s~tLtLtN~S~~~VAFKVKTTa------P----krY~VRPn~GvI~Pgesv~I~VtLqp~~ 74 (367)
-|.|.+.-+.|... ....+++|.|.++.++.--+.... | .-|.|.|+.-.|+||+...|.|......
T Consensus 11 ~v~l~~TRvI~~~~---~~~~sv~l~N~~~~p~LvQsWvd~~~~~~~p~~~~~pFivtPPlfrl~~~~~~~lRI~~~~~~ 87 (233)
T PRK15246 11 AVNIDRTRIIFASD---DVAQSLTLSNDNTTPMLLQVWTDAGNIDASPDNSKTPLVALPPVFKMQPGELRTLRLLLSSRQ 87 (233)
T ss_pred EEEECceEEEEcCC---CceEEEEEEeCCCCcEEEEEEEeCCCCccCcccccCcEEECCcceEECCCCceEEEEEECCCC
Confidence 36677777888863 446899999999876544432221 1 1499999999999999999999987533
Q ss_pred cCCCCCCCCCeEEEEEEEeCC
Q 017690 75 VAPPDLQCKDKFLIQGIVVPF 95 (367)
Q Consensus 75 ~~Ppd~k~kDKFLVQS~~Vp~ 95 (367)
..|.|. ---|.+....+|+
T Consensus 88 ~LP~DR--ESlf~lnv~~IP~ 106 (233)
T PRK15246 88 QLATDR--ESLFWLNIYQIPP 106 (233)
T ss_pred CCCCCc--eEEEEEEEEEcCC
Confidence 344332 2347777777775
No 25
>PRK15295 fimbrial assembly chaperone SthB; Provisional
Probab=83.48 E-value=9.6 Score=36.31 Aligned_cols=85 Identities=12% Similarity=0.157 Sum_probs=57.9
Q ss_pred ceEEeCCeeEEeeecCCeeEEEEEEEcCCCCeEEEEEecCC-------CCceeecCCceeeCCCCeEEEEEEeccCccCC
Q 017690 5 LLDIQPLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTS-------PKKYCVRPNVSIIKPKAISDFTVTMQAQRVAP 77 (367)
Q Consensus 5 LL~IdP~EL~F~~p~~k~~s~tLtLtN~S~~~VAFKVKTTa-------PkrY~VRPn~GvI~Pgesv~I~VtLqp~~~~P 77 (367)
-|.+++.-+.|... ....+++|.|.++.++.-...... ..-|.|.|+.-.|+||+...|.|..... ..|
T Consensus 20 ~i~l~~TRvI~~~~---~~~~si~i~N~~~~p~LvQsWv~~~~~~~~~~~pFivtPPl~rl~p~~~q~lRI~~~~~-~LP 95 (226)
T PRK15295 20 SIVVGGTRLVFDGN---NDESSINVENKDSKANLVQSWLSVVDPQVTNKQAFIITPPLFRLDAGQKNSIRVIRSGA-PLP 95 (226)
T ss_pred cEEeCceEEEEeCC---CceeEEEEEeCCCCcEEEEEEEeCCCCCCCCCCCEEEcCCeEEECCCCceEEEEEECCC-CCC
Confidence 35677777888863 346899999998876443322211 2249999999999999999999998742 334
Q ss_pred CCCCCCCeEEEEEEEeCC
Q 017690 78 PDLQCKDKFLIQGIVVPF 95 (367)
Q Consensus 78 pd~k~kDKFLVQS~~Vp~ 95 (367)
.|. ---|.+....+|+
T Consensus 96 ~Dr--Eslf~lnv~~IP~ 111 (226)
T PRK15295 96 ADR--ESMYWLNIKGIPS 111 (226)
T ss_pred CCc--eEEEEEEEEEcCC
Confidence 332 2236666666765
No 26
>PRK15299 fimbrial chaperone protein StiB; Provisional
Probab=82.40 E-value=11 Score=35.78 Aligned_cols=85 Identities=12% Similarity=0.143 Sum_probs=59.8
Q ss_pred ceEEeCCeeEEeeecCCeeEEEEEEEcCCCCeEEEEEecCC--------CCceeecCCceeeCCCCeEEEEEEeccCccC
Q 017690 5 LLDIQPLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTS--------PKKYCVRPNVSIIKPKAISDFTVTMQAQRVA 76 (367)
Q Consensus 5 LL~IdP~EL~F~~p~~k~~s~tLtLtN~S~~~VAFKVKTTa--------PkrY~VRPn~GvI~Pgesv~I~VtLqp~~~~ 76 (367)
-|.++|.-+.|... ....+++|.|.++.++.-...... ..-|.|.|+.-.|+||+...|.|..... ..
T Consensus 23 ~i~l~~TRvi~~~~---~~~~sl~l~N~~~~p~lvQsWv~~~~~~~~~~~~pfivtPPl~rl~p~~~q~lRI~~~~~-~l 98 (227)
T PRK15299 23 GINIGTTRVIFHGD---AKDASISISNSDNVPYLIQSWAQSISETGASGDAPFMVTPPLFRLNGGQKNVLRIIRTGG-NL 98 (227)
T ss_pred eEEECceEEEEeCC---CcEEEEEEEeCCCCcEEEEEEeecCCCCCCcCCCCEEEcCCeEEECCCCccEEEEEECCC-CC
Confidence 36777777888864 346899999998876555543321 1249999999999999999999998742 23
Q ss_pred CCCCCCCCeEEEEEEEeCC
Q 017690 77 PPDLQCKDKFLIQGIVVPF 95 (367)
Q Consensus 77 Ppd~k~kDKFLVQS~~Vp~ 95 (367)
|.|. -.-|.+....+|+
T Consensus 99 P~Dr--Eslf~lnv~eIP~ 115 (227)
T PRK15299 99 PEDR--ESLYWLDIKSIPS 115 (227)
T ss_pred CCcc--eEEEEEEeEecCC
Confidence 4332 2346666677765
No 27
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A.
Probab=81.75 E-value=5.1 Score=33.61 Aligned_cols=51 Identities=16% Similarity=0.252 Sum_probs=35.7
Q ss_pred EEEEEEEcCCCCeEEEEEecCCCCceee-cCCce-eeCCCCeEEEEEEeccCc
Q 017690 24 TCVIQLGNKSDQCVAFKVKTTSPKKYCV-RPNVS-IIKPKAISDFTVTMQAQR 74 (367)
Q Consensus 24 s~tLtLtN~S~~~VAFKVKTTaPkrY~V-RPn~G-vI~Pgesv~I~VtLqp~~ 74 (367)
..+++|.|.++++..|.|+...+..+.+ .|... -|.||++..+.|.+....
T Consensus 34 ~Y~lkl~Nkt~~~~~~~i~~~g~~~~~l~~~~~~i~v~~g~~~~~~v~v~~p~ 86 (118)
T PF11614_consen 34 QYTLKLTNKTNQPRTYTISVEGLPGAELQGPENTITVPPGETREVPVFVTAPP 86 (118)
T ss_dssp EEEEEEEE-SSS-EEEEEEEES-SS-EE-ES--EEEE-TT-EEEEEEEEEE-G
T ss_pred EEEEEEEECCCCCEEEEEEEecCCCeEEECCCcceEECCCCEEEEEEEEEECH
Confidence 5799999999999999999998888888 66454 499999999888876543
No 28
>PRK10884 SH3 domain-containing protein; Provisional
Probab=81.13 E-value=7.7 Score=36.80 Aligned_cols=58 Identities=16% Similarity=0.158 Sum_probs=37.9
Q ss_pred HhHHhhHHHHHHHHhhhhh-----------hhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhh
Q 017690 265 LKLAKDFEELKLKLNVMDS-----------QLREAEHTIRKLMEARKLATREKDMLKHELVSFFNYILS 322 (367)
Q Consensus 265 ~~~~~d~~~lk~kL~~les-----------kL~ea~~~i~kl~ee~r~~~~erd~l~~e~~~l~~~~~~ 322 (367)
..+-+.+++|+.+|++++. ++.+++..|..|+++.+.-.+|=..+|+|...|+.+...
T Consensus 96 p~le~el~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~ 164 (206)
T PRK10884 96 PDLENQVKTLTDKLNNIDNTWNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDD 164 (206)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4466777777777776644 556677777777777776666666666666665555443
No 29
>PRK15290 lfpB fimbrial chaperone protein; Provisional
Probab=79.80 E-value=24 Score=34.20 Aligned_cols=85 Identities=14% Similarity=0.133 Sum_probs=59.9
Q ss_pred eEEeCCeeEEeeecCCeeEEEEEEEcCCC-CeEEEEEecCC---C----CceeecCCceeeCCCCeEEEEEEeccCccCC
Q 017690 6 LDIQPLELKFTFEVKKQSTCVIQLGNKSD-QCVAFKVKTTS---P----KKYCVRPNVSIIKPKAISDFTVTMQAQRVAP 77 (367)
Q Consensus 6 L~IdP~EL~F~~p~~k~~s~tLtLtN~S~-~~VAFKVKTTa---P----krY~VRPn~GvI~Pgesv~I~VtLqp~~~~P 77 (367)
|.+++.-+.|+. +....+++|+|.++ .++..-....+ . .-|.|-|+.-.|+||+...|.|...+....|
T Consensus 39 v~l~~TRvIy~~---~~~~~sl~v~N~~~~~p~LvQsWvd~~~~~~~~~~pFivtPPlfrl~p~~~q~lRIi~~~~~~LP 115 (243)
T PRK15290 39 VVIGGTRVVYLS---NNPDKSISVFSKEEKIPYLIQAWVDPFNKEDKSKAPFTVIPPVSRLEPSQEKVLRIIHTKGVSLP 115 (243)
T ss_pred EEECceEEEEeC---CCceEEEEEEeCCCCCcEEEEEEEecCCCCCcccCCEEEcCCeEEECCCCceEEEEEEcCCCCCC
Confidence 566777788886 34467999999986 46665554431 1 1399999999999999999999987543345
Q ss_pred CCCCCCCeEEEEEEEeCC
Q 017690 78 PDLQCKDKFLIQGIVVPF 95 (367)
Q Consensus 78 pd~k~kDKFLVQS~~Vp~ 95 (367)
.|. ---|.+....+|+
T Consensus 116 ~DR--ESlf~lnv~eIPp 131 (243)
T PRK15290 116 DDR--ESVFWLNIKNIPP 131 (243)
T ss_pred CCe--eEEEEEEEEEcCC
Confidence 442 2346666667775
No 30
>PRK15208 long polar fimbrial chaperone LpfB; Provisional
Probab=77.93 E-value=17 Score=34.59 Aligned_cols=85 Identities=11% Similarity=0.186 Sum_probs=56.6
Q ss_pred ceEEeCCeeEEeeecCCeeEEEEEEEcCCCC-eEEEEEec-C-CC---CceeecCCceeeCCCCeEEEEEEeccCccCCC
Q 017690 5 LLDIQPLELKFTFEVKKQSTCVIQLGNKSDQ-CVAFKVKT-T-SP---KKYCVRPNVSIIKPKAISDFTVTMQAQRVAPP 78 (367)
Q Consensus 5 LL~IdP~EL~F~~p~~k~~s~tLtLtN~S~~-~VAFKVKT-T-aP---krY~VRPn~GvI~Pgesv~I~VtLqp~~~~Pp 78 (367)
-|.+.|.-+.|... .....++|.|.+++ ++...... . .. .-|.|-|+.-.|+||+...|.|..... ..|.
T Consensus 22 gv~l~~TRvI~~~~---~~~~si~i~N~~~~~~~LvQsWv~~~~~~~~~pfivtPPl~rl~p~~~q~lRIi~~~~-~lP~ 97 (228)
T PRK15208 22 GVALSSTRVIYDGS---KKEASLTVNNKSKTEEFLIQSWIDDANGNKKTPFIITPPLFKLDPTKNNVLRIVNITN-TLPQ 97 (228)
T ss_pred cEEeCceEEEEeCC---CceEEEEEEeCCCCCcEEEEEEEECCCCCccCCEEECCCeEEECCCCccEEEEEECCC-CCCC
Confidence 46777777888873 34689999999853 33332222 1 11 139999999999999999999998642 3343
Q ss_pred CCCCCCeEEEEEEEeCC
Q 017690 79 DLQCKDKFLIQGIVVPF 95 (367)
Q Consensus 79 d~k~kDKFLVQS~~Vp~ 95 (367)
|.. --|.+-...+|+
T Consensus 98 DrE--Slf~lnv~eIP~ 112 (228)
T PRK15208 98 DRE--SVYWINVKAIPA 112 (228)
T ss_pred Cee--EEEEEEEEEcCC
Confidence 322 236666666665
No 31
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=77.04 E-value=12 Score=33.67 Aligned_cols=56 Identities=21% Similarity=0.231 Sum_probs=34.5
Q ss_pred HHhhHHHHHHHHhhhhhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhh
Q 017690 267 LAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELVSFFNYILS 322 (367)
Q Consensus 267 ~~~d~~~lk~kL~~leskL~ea~~~i~kl~ee~r~~~~erd~l~~e~~~l~~~~~~ 322 (367)
+..|.+|-+.-+..|+.++.+...-...|..|-.+-..||+.|-+++.-.+.+|..
T Consensus 43 ~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~e 98 (140)
T PF10473_consen 43 LILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSE 98 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55556666666666666666666666666666666666666666666666666654
No 32
>PRK15192 fimbrial chaperone BcfG; Provisional
Probab=77.03 E-value=29 Score=33.55 Aligned_cols=82 Identities=13% Similarity=0.253 Sum_probs=57.7
Q ss_pred eEEeCCeeEEeeecCCeeEEEEEEEcCCCCeEEEEEecC----------C----CCceeecCCceeeCCCCeEEEEEEec
Q 017690 6 LDIQPLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTT----------S----PKKYCVRPNVSIIKPKAISDFTVTMQ 71 (367)
Q Consensus 6 L~IdP~EL~F~~p~~k~~s~tLtLtN~S~~~VAFKVKTT----------a----PkrY~VRPn~GvI~Pgesv~I~VtLq 71 (367)
|.++..-+.|+. +....+++|.|.++.+ |=|++. . ..-|.|.|+.-.|+||+...+.|...
T Consensus 24 i~l~~TRvIy~~---~~k~~sv~l~N~~~~p--~LvQswv~~~~~w~~~~~~~~~~PFivtPPlfrl~p~~~~~lRI~~~ 98 (234)
T PRK15192 24 VVIGGTRFIYHA---GAPALSVPVSNHSEAS--WLIDTHILPGGRWPGTKNEGNITPFVVTPPLFMLSARQENSMRVVYT 98 (234)
T ss_pred EEeCceEEEEcC---CCceEEEEEEeCCCCc--EEEEEEeccCccccccCCccccCCEEEcCCeEEECCCCceEEEEEEC
Confidence 556666677876 3446899999999876 555552 1 11399999999999999999999987
Q ss_pred cCccCCCCCCCCCeEEEEEEEeCC
Q 017690 72 AQRVAPPDLQCKDKFLIQGIVVPF 95 (367)
Q Consensus 72 p~~~~Ppd~k~kDKFLVQS~~Vp~ 95 (367)
+. ..|.|. ---|-+....+|+
T Consensus 99 ~~-~LP~DR--ESlf~lnv~~IPp 119 (234)
T PRK15192 99 GA-PLPADR--ESLFTLSIAAIPS 119 (234)
T ss_pred CC-CCCCcc--eEEEEEEEEecCC
Confidence 53 335442 2346666777775
No 33
>COG3121 FimC P pilus assembly protein, chaperone PapD [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=76.77 E-value=31 Score=33.00 Aligned_cols=85 Identities=13% Similarity=0.176 Sum_probs=64.0
Q ss_pred eEEeCCeeEEeeecCCeeEEEEEEEcCCCCeEEEEEecCC-------CCceeecCCceeeCCCCeEEEEEEeccCccCCC
Q 017690 6 LDIQPLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTS-------PKKYCVRPNVSIIKPKAISDFTVTMQAQRVAPP 78 (367)
Q Consensus 6 L~IdP~EL~F~~p~~k~~s~tLtLtN~S~~~VAFKVKTTa-------PkrY~VRPn~GvI~Pgesv~I~VtLqp~~~~Pp 78 (367)
+.+.+.-+.|... .....++|.|.++.++.-.+..-+ ...|.|-|+.-.|+||+...|.|.+.+. ..|.
T Consensus 29 v~i~~TRiI~~~~---~k~~sl~l~N~~~~p~LvQ~wvd~~~~~~~~~~pfvvtPPv~rl~p~~~q~vRi~~~~~-~lP~ 104 (235)
T COG3121 29 VVLGGTRIIYPAG---DKETSLTLRNDGNQPYLVQSWVDDGLEPEKSTVPFVVTPPVFRLEPGQEQQLRILYTGN-KLPA 104 (235)
T ss_pred EEecceEEEEeCC---CceeEEEEEcCCCCCEEEEEEEcCCCCCccccCCEEecCCeEEECCCCccEEEEEecCC-CCCC
Confidence 4566667788764 345899999988899988865542 3459999999999999999999999986 3454
Q ss_pred CCCCCCeEEEEEEEeCCC
Q 017690 79 DLQCKDKFLIQGIVVPFG 96 (367)
Q Consensus 79 d~k~kDKFLVQS~~Vp~g 96 (367)
|. -.-|.+..-.+|+.
T Consensus 105 dr--Eslf~lnv~eIPp~ 120 (235)
T COG3121 105 DR--ESLFRLNVDEIPPK 120 (235)
T ss_pred Cc--eeEEEEEeeecCCC
Confidence 42 34577777777653
No 34
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=76.40 E-value=4.9 Score=37.36 Aligned_cols=57 Identities=30% Similarity=0.349 Sum_probs=31.2
Q ss_pred HhHHhhHHHHHHHHhhhhhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhh
Q 017690 265 LKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELVSFFNYILS 322 (367)
Q Consensus 265 ~~~~~d~~~lk~kL~~leskL~ea~~~i~kl~ee~r~~~~erd~l~~e~~~l~~~~~~ 322 (367)
..+.+++++++.++..++.+|+++.. =..=.++|....++.+.|++|...|+.++.+
T Consensus 72 ~~l~~~~~~~~~~i~~l~~~i~~~~~-~r~~~~eR~~~l~~l~~l~~~~~~l~~el~~ 128 (188)
T PF03962_consen 72 EKLQKEIEELEKKIEELEEKIEEAKK-GREESEEREELLEELEELKKELKELKKELEK 128 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh-cccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555555544421 1122245555566777777777777777763
No 35
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=76.00 E-value=16 Score=32.87 Aligned_cols=63 Identities=19% Similarity=0.142 Sum_probs=52.4
Q ss_pred CchhHHHHhHHhhHHHHHHHHhhhhhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhh
Q 017690 258 PAKDILELKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELVSFFNYIL 321 (367)
Q Consensus 258 ~~~~~~~~~~~~d~~~lk~kL~~leskL~ea~~~i~kl~ee~r~~~~erd~l~~e~~~l~~~~~ 321 (367)
+.+|++.+ |-.|++.....+..+....+-+.+.|..|.++-..-+.++.-|..|++.+|..-.
T Consensus 21 sle~~v~~-LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~ 83 (140)
T PF10473_consen 21 SLEDHVES-LERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKE 83 (140)
T ss_pred hHHHHHHH-HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555 6777777777777777788889999999999999999999999999999997653
No 36
>PRK15254 fimbrial chaperone protein StdC; Provisional
Probab=75.66 E-value=24 Score=34.13 Aligned_cols=86 Identities=17% Similarity=0.151 Sum_probs=58.1
Q ss_pred ceEEeCCeeEEeeecCCeeEEEEEEEcCCC-CeEEEEEecC--C--C-CceeecCCceeeCCCCeEEEEEEecc--CccC
Q 017690 5 LLDIQPLELKFTFEVKKQSTCVIQLGNKSD-QCVAFKVKTT--S--P-KKYCVRPNVSIIKPKAISDFTVTMQA--QRVA 76 (367)
Q Consensus 5 LL~IdP~EL~F~~p~~k~~s~tLtLtN~S~-~~VAFKVKTT--a--P-krY~VRPn~GvI~Pgesv~I~VtLqp--~~~~ 76 (367)
-|.+++.-+.|.. +....+++|.|.++ .++.-..... . + .-|.|.|+.-.|+||+...|.|.... +...
T Consensus 17 ~v~l~~TRvIy~~---~~~~~sv~v~N~~~~~p~LvQsWv~d~~~~~~~pFivtPPlfrl~p~~~~~lRI~~~~~~~~~l 93 (239)
T PRK15254 17 AVNVDRTRIIMDA---PQKTVAITLNNDDKTTPFLAQSWVTDADGVRTDALMALPPLQRIDAGQKSQVRITQVRGLTDKL 93 (239)
T ss_pred eEEECceEEEEeC---CCceEEEEEEeCCCCCcEEEEEEEecCCCCCcCCEEEcCCeEEECCCCceEEEEEEcccCCCCC
Confidence 3566677788886 34468999999985 3554433221 1 1 24999999999999999999999863 2334
Q ss_pred CCCCCCCCeEEEEEEEeCC
Q 017690 77 PPDLQCKDKFLIQGIVVPF 95 (367)
Q Consensus 77 Ppd~k~kDKFLVQS~~Vp~ 95 (367)
|.|. -.-|-+....+|+
T Consensus 94 P~DR--ESlf~lnv~~IP~ 110 (239)
T PRK15254 94 PQDR--ETLFWFNVRGVPP 110 (239)
T ss_pred CCCc--eEEEEEEEEEcCC
Confidence 4442 2346666666765
No 37
>PRK15188 fimbrial chaperone protein BcfB; Provisional
Probab=74.95 E-value=24 Score=33.92 Aligned_cols=84 Identities=12% Similarity=0.254 Sum_probs=56.7
Q ss_pred eEEeCCeeEEeeecCCeeEEEEEEEcCCCC-eEEEEEec-C-C---CCceeecCCceeeCCCCeEEEEEEeccCccCCCC
Q 017690 6 LDIQPLELKFTFEVKKQSTCVIQLGNKSDQ-CVAFKVKT-T-S---PKKYCVRPNVSIIKPKAISDFTVTMQAQRVAPPD 79 (367)
Q Consensus 6 L~IdP~EL~F~~p~~k~~s~tLtLtN~S~~-~VAFKVKT-T-a---PkrY~VRPn~GvI~Pgesv~I~VtLqp~~~~Ppd 79 (367)
|.+++.-+.|... ....+++|+|.+++ +..-.... + . ..-|.|.|+.-.|+||+...+.|...+. ..|.|
T Consensus 29 i~l~~TRvIy~~~---~~~~sv~i~N~~~~~p~LvQsWv~~~~~~~~~pFivtPPlfrl~~~~~~~lRI~~~~~-~lP~D 104 (228)
T PRK15188 29 IALGATRVIYPQG---SKQTSLPIINSSASNVFLIQSWVANADGSRSTDFIITPPLFVIQPKKENILRIMYVGP-SLPTD 104 (228)
T ss_pred EEECcEEEEEcCC---CceEEEEEEeCCCCccEEEEEEEecCCCCccCCEEEcCCeEEECCCCceEEEEEECCC-CCCCC
Confidence 5667777888863 44689999999864 33322222 1 1 1249999999999999999999998743 34444
Q ss_pred CCCCCeEEEEEEEeCC
Q 017690 80 LQCKDKFLIQGIVVPF 95 (367)
Q Consensus 80 ~k~kDKFLVQS~~Vp~ 95 (367)
. -.-|.+....+|+
T Consensus 105 R--ESlf~lnv~~IP~ 118 (228)
T PRK15188 105 R--ESVFYLNSKAIPS 118 (228)
T ss_pred c--eEEEEEEEEecCC
Confidence 2 2346666666765
No 38
>PRK11637 AmiB activator; Provisional
Probab=73.81 E-value=13 Score=38.17 Aligned_cols=49 Identities=12% Similarity=0.173 Sum_probs=21.8
Q ss_pred HHHHHHhhhhhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhh
Q 017690 273 ELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELVSFFNYIL 321 (367)
Q Consensus 273 ~lk~kL~~leskL~ea~~~i~kl~ee~r~~~~erd~l~~e~~~l~~~~~ 321 (367)
++..+|+.++.+|+.++..|..+..+-..+.++-+.|+.++..++++|.
T Consensus 72 ~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~ 120 (428)
T PRK11637 72 SLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQA 120 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444444444444444433
No 39
>PF13234 rRNA_proc-arch: rRNA-processing arch domain; PDB: 4A4K_E 4A4Z_A 2XGJ_B 3L9O_A.
Probab=73.10 E-value=3.4 Score=39.61 Aligned_cols=55 Identities=18% Similarity=0.195 Sum_probs=40.8
Q ss_pred hhHHHHHHHHhhhhhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhc
Q 017690 269 KDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELVSFFNYILSC 323 (367)
Q Consensus 269 ~d~~~lk~kL~~leskL~ea~~~i~kl~ee~r~~~~erd~l~~e~~~l~~~~~~~ 323 (367)
.+|.++-.|+.+||.+|....-.-..-.++.-...++|..|+.|+..||+.|+++
T Consensus 214 ~~~~e~~~k~~~Le~rl~~~~~~~~~~~~~~~~~~~~k~~l~~~i~~Lk~~l~~a 268 (268)
T PF13234_consen 214 PEFVELVKKIEALEKRLSSHPLHKCPDFEEHYALYHEKAELQEEIKALKRQLSDA 268 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCHCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4677777777777777766443333444566777889999999999999999875
No 40
>PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain of unknown function is present in bacterial and plant peptidases belonging to MEROPS peptidase family S8 (subfamily S8A subtilisin, clan SB). It is C-terminal to and adjacent to the S8 peptidase domain and can be found in conjunction with the PA (Protease associated) domain (IPR003137 from INTERPRO) and additionally in Gram-positive bacteria with the surface protein anchor domain (IPR001899 from INTERPRO).; GO: 0004252 serine-type endopeptidase activity, 0005618 cell wall, 0016020 membrane; PDB: 3EIF_A 1XF1_B.
Probab=72.58 E-value=9.1 Score=31.84 Aligned_cols=55 Identities=18% Similarity=0.311 Sum_probs=33.0
Q ss_pred CCeeEEEEEEEcCCCCeEEEEEecC-----C---CCceee-------------cCCceeeCCCCeEEEEEEeccCc
Q 017690 20 KKQSTCVIQLGNKSDQCVAFKVKTT-----S---PKKYCV-------------RPNVSIIKPKAISDFTVTMQAQR 74 (367)
Q Consensus 20 ~k~~s~tLtLtN~S~~~VAFKVKTT-----a---PkrY~V-------------RPn~GvI~Pgesv~I~VtLqp~~ 74 (367)
++..+..|+|+|.+++.+.|++.-. . .+.|.. .|..=.|.||++..|.|++.+..
T Consensus 7 ~~~~~~~itl~N~~~~~~ty~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~vTV~ag~s~~v~vti~~p~ 82 (112)
T PF06280_consen 7 GNKFSFTITLHNYGDKPVTYTLSHVPVLTDKTDTEEGYSILVPPVPSISTVSFSPDTVTVPAGQSKTVTVTITPPS 82 (112)
T ss_dssp -SEEEEEEEEEE-SSS-EEEEEEEE-EEEEEE--ETTEEEEEEEE----EEE---EEEEE-TTEEEEEEEEEE--G
T ss_pred CCceEEEEEEEECCCCCEEEEEeeEEEEeeEeeccCCcccccccccceeeEEeCCCeEEECCCCEEEEEEEEEehh
Confidence 4456789999999999999997554 1 122221 12223578899999998888643
No 41
>PRK11637 AmiB activator; Provisional
Probab=71.98 E-value=16 Score=37.45 Aligned_cols=56 Identities=13% Similarity=0.161 Sum_probs=31.9
Q ss_pred hHHhhHHHHHHHHhhhhhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhh
Q 017690 266 KLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELVSFFNYIL 321 (367)
Q Consensus 266 ~~~~d~~~lk~kL~~leskL~ea~~~i~kl~ee~r~~~~erd~l~~e~~~l~~~~~ 321 (367)
.+.+.+.+|..+|+.++.++++.+.-|.++..+-..+..+-+.++.++..++..+.
T Consensus 72 ~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~ 127 (428)
T PRK11637 72 SLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLA 127 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666666666665655555555555555555555555544443
No 42
>PRK15195 fimbrial chaperone protein FimC; Provisional
Probab=70.54 E-value=38 Score=32.44 Aligned_cols=84 Identities=12% Similarity=0.229 Sum_probs=54.9
Q ss_pred eEEeCCeeEEeeecCCeeEEEEEEEcCCCC--eEEEEEecCC----CCceeecCCceeeCCCCeEEEEEEeccCccCCCC
Q 017690 6 LDIQPLELKFTFEVKKQSTCVIQLGNKSDQ--CVAFKVKTTS----PKKYCVRPNVSIIKPKAISDFTVTMQAQRVAPPD 79 (367)
Q Consensus 6 L~IdP~EL~F~~p~~k~~s~tLtLtN~S~~--~VAFKVKTTa----PkrY~VRPn~GvI~Pgesv~I~VtLqp~~~~Ppd 79 (367)
+.+++.-+.|... .....++|.|.+++ .+.+.--.+. ..-|.|.|+.-.|+||+...|.|..... ..|.|
T Consensus 27 i~i~~TRvIy~~~---~~~~si~l~N~~~~~~~LvQsWv~~~~~~~~~pfivtPPlfrl~p~~~q~lRIi~~~~-~LP~D 102 (229)
T PRK15195 27 IALGATRVIYPAD---AKQTSLAIRNSHTNERYLVNSWIENSSGVKEKSFIVTPPLFVSEPKSENTLRIIYAGP-PLAAD 102 (229)
T ss_pred EEECCeEEEEeCC---CceEEEEEEeCCCCccEEEEEEecCCCCCccCCEEEcCCeEEECCCCceEEEEEECCC-CCCCC
Confidence 5677777888753 33489999999854 3333211111 1259999999999999999999998742 23433
Q ss_pred CCCCCeEEEEEEEeCC
Q 017690 80 LQCKDKFLIQGIVVPF 95 (367)
Q Consensus 80 ~k~kDKFLVQS~~Vp~ 95 (367)
.. .-|.+....+|+
T Consensus 103 rE--Slf~Lnv~eIP~ 116 (229)
T PRK15195 103 RE--SLFWMNVKAIPS 116 (229)
T ss_pred ee--EEEEEEeeecCC
Confidence 22 236666666665
No 43
>PRK15218 fimbrial chaperone protein PegB; Provisional
Probab=69.23 E-value=66 Score=30.83 Aligned_cols=82 Identities=13% Similarity=0.198 Sum_probs=54.8
Q ss_pred EeCCeeEEeeecCCeeEEEEEEEcCCCCeEEEEEecCCC----------CceeecCCceeeCCCCeEEEEEEeccCccCC
Q 017690 8 IQPLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSP----------KKYCVRPNVSIIKPKAISDFTVTMQAQRVAP 77 (367)
Q Consensus 8 IdP~EL~F~~p~~k~~s~tLtLtN~S~~~VAFKVKTTaP----------krY~VRPn~GvI~Pgesv~I~VtLqp~~~~P 77 (367)
++-.-+.|+. +....+++|.|.++.+..-....... .-|.|.|+.-.|+||+...+.|.... ...|
T Consensus 22 l~~TRvIy~~---~~~~~si~i~N~~~~pyLvQsWvd~~~~~~~~~~~~~pFivtPPlfRl~p~~~~~lRI~~~~-~~LP 97 (226)
T PRK15218 22 IYGTRIIYPA---QKKDITVQLMNDGKRSSLIQAWIDNGDTSLPPEKLQVPFIMTPPVIRVAANSGQQLKIKKLA-NNLP 97 (226)
T ss_pred eCceEEEEcC---CCcEEEEEEEcCCCCcEEEEEEEeCCCCCCCcccccCCEEECCCeEEECCCCceEEEEEECC-CCCC
Confidence 3334577775 34467999999988764333222211 14999999999999999999999874 3345
Q ss_pred CCCCCCCeEEEEEEEeCC
Q 017690 78 PDLQCKDKFLIQGIVVPF 95 (367)
Q Consensus 78 pd~k~kDKFLVQS~~Vp~ 95 (367)
.|. ---|-+....+|+
T Consensus 98 ~DR--ESlfwlnv~~IPp 113 (226)
T PRK15218 98 GDR--ESLFYLNVLDIPP 113 (226)
T ss_pred cce--eEEEEEEEEEcCC
Confidence 442 2346677777776
No 44
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=67.92 E-value=17 Score=28.44 Aligned_cols=51 Identities=20% Similarity=0.268 Sum_probs=41.3
Q ss_pred HHHHHHHhhhhhhhhhhhHHHHHHHHHhhhhh-HHHHHHHHHHHHHHhhhhh
Q 017690 272 EELKLKLNVMDSQLREAEHTIRKLMEARKLAT-REKDMLKHELVSFFNYILS 322 (367)
Q Consensus 272 ~~lk~kL~~leskL~ea~~~i~kl~ee~r~~~-~erd~l~~e~~~l~~~~~~ 322 (367)
+.=+..+...+..|+||+.+|..+.-|-|... .+|..++..+...|..+.+
T Consensus 21 ~~r~~~i~~~e~~l~ea~~~l~qMe~E~~~~p~s~r~~~~~kl~~yr~~l~~ 72 (79)
T PF05008_consen 21 EQRKSLIREIERDLDEAEELLKQMELEVRSLPPSERNQYKSKLRSYRSELKK 72 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH
Confidence 45567788889999999999999988877665 8999998888888877654
No 45
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=67.71 E-value=18 Score=39.43 Aligned_cols=61 Identities=16% Similarity=0.152 Sum_probs=53.2
Q ss_pred hHHhhHHHHHHHHhhhhhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhccch
Q 017690 266 KLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELVSFFNYILSCHYD 326 (367)
Q Consensus 266 ~~~~d~~~lk~kL~~leskL~ea~~~i~kl~ee~r~~~~erd~l~~e~~~l~~~~~~~~~~ 326 (367)
.+..|+.-.++=+++|++|-+.-+..+.+|.+|--.-.-|+.+||+|--.|++.|-.|.|-
T Consensus 270 ~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS 330 (581)
T KOG0995|consen 270 RLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQGIS 330 (581)
T ss_pred HHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 3778888888888999998888888999999998888899999999999999998888764
No 46
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=67.47 E-value=15 Score=36.76 Aligned_cols=55 Identities=22% Similarity=0.237 Sum_probs=48.2
Q ss_pred HHhhHHHHHHHHhhhhhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhh
Q 017690 267 LAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELVSFFNYIL 321 (367)
Q Consensus 267 ~~~d~~~lk~kL~~leskL~ea~~~i~kl~ee~r~~~~erd~l~~e~~~l~~~~~ 321 (367)
+...+++...+|...+.+|.+.+..|..|+.+-..+++|++.|++++....+++.
T Consensus 226 a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~ 280 (344)
T PF12777_consen 226 AEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLE 280 (344)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 5677888888888888899999999999999999999999999999998877754
No 47
>PRK15274 putative periplasmic fimbrial chaperone protein SteC; Provisional
Probab=65.67 E-value=87 Score=30.76 Aligned_cols=80 Identities=15% Similarity=0.176 Sum_probs=54.1
Q ss_pred CeeEEeeecCCeeEEEEEEEcCCCC-eEEEEEecCCC------CceeecCCceeeCCCCeEEEEEEecc-CccCCCCCCC
Q 017690 11 LELKFTFEVKKQSTCVIQLGNKSDQ-CVAFKVKTTSP------KKYCVRPNVSIIKPKAISDFTVTMQA-QRVAPPDLQC 82 (367)
Q Consensus 11 ~EL~F~~p~~k~~s~tLtLtN~S~~-~VAFKVKTTaP------krY~VRPn~GvI~Pgesv~I~VtLqp-~~~~Ppd~k~ 82 (367)
.-+.|.. +....+++|.|.++. ++.-....... .-|.|.|+.-.|+||+...|.|...+ +...|.|..
T Consensus 33 TRvIy~e---~~~~~sv~v~N~~~~~p~LVQsWvdd~~~~~~~~pFivtPPLfRlep~~~q~lRI~~~~~~~~LP~DRE- 108 (257)
T PRK15274 33 TRVIFNG---NENSITVTLKNGNATLPYLAQAWLEDDKFAKDTRYFTALPPLQRIEPKSDGQVKVQPLPAAASLPQDRE- 108 (257)
T ss_pred eEEEEeC---CCceEEEEEEeCCCCCcEEEEEEccCCCCCcccCCEEEcCCeEEECCCCceEEEEEECCCCCCCCCcee-
Confidence 3477775 344689999999865 54433322111 24999999999999999999999875 234454422
Q ss_pred CCeEEEEEEEeCC
Q 017690 83 KDKFLIQGIVVPF 95 (367)
Q Consensus 83 kDKFLVQS~~Vp~ 95 (367)
--|-+....+|+
T Consensus 109 -SlFwlNv~eIPp 120 (257)
T PRK15274 109 -SLFYFNVREIPP 120 (257)
T ss_pred -EEEEEEEEEcCC
Confidence 346677777776
No 48
>TIGR03079 CH4_NH3mon_ox_B methane monooxygenase/ammonia monooxygenase, subunit B. Both ammonia oxidizers such as Nitrosomonas europaea and methanotrophs (obligate methane oxidizers) such as Methylococcus capsulatus each can grow only on their own characteristic substrate. However, both groups have the ability to oxidize both substrates, and so the relevant enzymes must be named here according to their ability to oxidze both. The protein family represented here reflects subunit B of both the particulate methane monooxygenase of methylotrophs and the ammonia monooxygenase of nitrifying bacteria.
Probab=65.60 E-value=26 Score=36.49 Aligned_cols=56 Identities=14% Similarity=0.221 Sum_probs=39.9
Q ss_pred cCCeeEEEEEEEcCCCCeEEEEEecC------CC-CceeecCCce--------------eeCCCCeEEEEEEeccCc
Q 017690 19 VKKQSTCVIQLGNKSDQCVAFKVKTT------SP-KKYCVRPNVS--------------IIKPKAISDFTVTMQAQR 74 (367)
Q Consensus 19 ~~k~~s~tLtLtN~S~~~VAFKVKTT------aP-krY~VRPn~G--------------vI~Pgesv~I~VtLqp~~ 74 (367)
+++..+-+++++|.++.+|-.+==+| +| +.|...|+.. =|.||++.+|.|..|.-.
T Consensus 280 PGR~l~~~~~VTN~g~~~vrlgEF~TA~vRFlN~~~v~~~~~~yP~~lla~GL~v~d~~pI~PGETr~v~v~aqdA~ 356 (399)
T TIGR03079 280 PGRALRVTMEITNNGDQVISIGEFTTAGIRFMNANGVRVLDPDYPRELLAEGLEVDDQSAIAPGETVEVKMEAKDAL 356 (399)
T ss_pred CCcEEEEEEEEEcCCCCceEEEeEeecceEeeCcccccccCCCChHHHhhccceeCCCCCcCCCcceEEEEEEehhh
Confidence 46788899999999999998773333 33 3444444332 289999999999988543
No 49
>PRK15224 pili assembly chaperone protein SafB; Provisional
Probab=64.70 E-value=85 Score=30.45 Aligned_cols=81 Identities=12% Similarity=0.183 Sum_probs=55.5
Q ss_pred EEeCCeeEEeeecCCeeEEEEEEEcCCCCeEEEEEec----CC---CCceeecCCceeeCCCCeEEEEEEeccCccCCCC
Q 017690 7 DIQPLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKT----TS---PKKYCVRPNVSIIKPKAISDFTVTMQAQRVAPPD 79 (367)
Q Consensus 7 ~IdP~EL~F~~p~~k~~s~tLtLtN~S~~~VAFKVKT----Ta---PkrY~VRPn~GvI~Pgesv~I~VtLqp~~~~Ppd 79 (367)
.++-.-+.|+. +....+++|.|.++.+ |=|++ .. ..-|.|.|+.-.|+|++...+.|.... ...|.|
T Consensus 31 ~l~~TRvIy~~---~~k~~sl~v~N~~~~p--yLvQsWvd~~~~~~~~pFivtPPlfRlep~~~~~lRI~~~~-~~LP~D 104 (237)
T PRK15224 31 KLGATRVIYHA---GTAGATLSVSNPQNYP--ILVQSSVKAADKSSPAPFLVMPPLFRLEANQQSQLRIVRTG-GDMPTD 104 (237)
T ss_pred EeCceEEEEeC---CCcEEEEEEEcCCCCc--EEEEEEEeCCCCCccCCEEECCCeEEECCCCceEEEEEECC-CCCCCc
Confidence 33334577775 3346899999998775 55554 11 123999999999999999999999874 344544
Q ss_pred CCCCCeEEEEEEEeCC
Q 017690 80 LQCKDKFLIQGIVVPF 95 (367)
Q Consensus 80 ~k~kDKFLVQS~~Vp~ 95 (367)
.. --|-+....+|+
T Consensus 105 RE--SlFwlnv~~IPp 118 (237)
T PRK15224 105 RE--TLQWVCIKAVPP 118 (237)
T ss_pred ee--EEEEEEEEEcCC
Confidence 22 346666677775
No 50
>PF08912 Rho_Binding: Rho Binding; InterPro: IPR015008 Rho is responsible for the recognition and binding of Rho binding domain-containing proteins (such as ROCK) to Rho, resulting in activation of the GTPase which in turn modulates the phosphorylation of various signalling proteins. This domain is within an amphipathic alpha-helical coiled-coil and interacts with Rho through predominantly hydrophobic interactions []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0000910 cytokinesis, 0006468 protein phosphorylation; PDB: 1UIX_A 1S1C_X.
Probab=62.31 E-value=29 Score=28.07 Aligned_cols=33 Identities=24% Similarity=0.449 Sum_probs=30.1
Q ss_pred HHhhHHHHHHHHhhhhhhhhhhhHHHHHHHHHh
Q 017690 267 LAKDFEELKLKLNVMDSQLREAEHTIRKLMEAR 299 (367)
Q Consensus 267 ~~~d~~~lk~kL~~leskL~ea~~~i~kl~ee~ 299 (367)
|++|+.||-.....|--||++++.-+.+++++.
T Consensus 1 L~kdv~~l~~EkeeL~~klk~~qeel~~~k~~~ 33 (69)
T PF08912_consen 1 LTKDVANLAKEKEELNNKLKKQQEELQKLKEEE 33 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 689999999999999999999999999999887
No 51
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=61.86 E-value=29 Score=32.30 Aligned_cols=63 Identities=16% Similarity=0.241 Sum_probs=50.7
Q ss_pred HhHHhhHHHHHHHHhhhhhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhccchhh
Q 017690 265 LKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELVSFFNYILSCHYDCL 328 (367)
Q Consensus 265 ~~~~~d~~~lk~kL~~leskL~ea~~~i~kl~ee~r~~~~erd~l~~e~~~l~~~~~~~~~~~~ 328 (367)
...-..++.|+.++..++.++.+.+..|..++.+ |-.+.||..+-+++..|+.++.+-.-..-
T Consensus 65 ~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~-r~~~~eR~~~l~~l~~l~~~~~~l~~el~ 127 (188)
T PF03962_consen 65 QKRQNKLEKLQKEIEELEKKIEELEEKIEEAKKG-REESEEREELLEELEELKKELKELKKELE 127 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455678888888888888999999999888554 45569999999999999999887665544
No 52
>PRK15233 putative fimbrial chaperone protein SefB; Provisional
Probab=60.90 E-value=75 Score=31.09 Aligned_cols=76 Identities=12% Similarity=0.146 Sum_probs=51.9
Q ss_pred eeEEeeecCCeeEEEEEEEcCCCCeEEEEEec--C--C---CCceeecCCceeeCCCCeEEEEEEeccCccCCCCCCCCC
Q 017690 12 ELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKT--T--S---PKKYCVRPNVSIIKPKAISDFTVTMQAQRVAPPDLQCKD 84 (367)
Q Consensus 12 EL~F~~p~~k~~s~tLtLtN~S~~~VAFKVKT--T--a---PkrY~VRPn~GvI~Pgesv~I~VtLqp~~~~Ppd~k~kD 84 (367)
-+.|... ....+++|.|.++.+ |-|++ . . ..-|.|.|+.-.|+||+...+.|..... ..|.|.. -
T Consensus 48 RvIy~~~---~~~~sl~i~N~~~~p--~LvQsWvd~~~~~~~~pFiVtPPLfRLep~~~~~lRIi~~~~-~LP~DRE--S 119 (246)
T PRK15233 48 RVIYKED---APSTSFWIMNEKEYP--ILVQTQVYNDDKSSKAPFIVTPPILKVESNARTRLKVIPTSN-LFNKNEE--S 119 (246)
T ss_pred EEEEeCC---CcEEEEEEEcCCCCc--EEEEEEEecCCCCccCCEEECCCeEEECCCCceEEEEEECCC-CCCcCce--E
Confidence 4566542 346899999987766 44443 1 1 1249999999999999999999998743 3454422 2
Q ss_pred eEEEEEEEeCC
Q 017690 85 KFLIQGIVVPF 95 (367)
Q Consensus 85 KFLVQS~~Vp~ 95 (367)
-|.+....+|+
T Consensus 120 lfwlnv~~IPp 130 (246)
T PRK15233 120 LYWLCVKGVPP 130 (246)
T ss_pred EEEEEEEEcCC
Confidence 36777777776
No 53
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=60.45 E-value=30 Score=33.21 Aligned_cols=84 Identities=18% Similarity=0.173 Sum_probs=62.8
Q ss_pred HhHH--hhHHHHHHHHhhhhhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHH-HHhhhhhccchhhhhhhhhhhccchh
Q 017690 265 LKLA--KDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELVS-FFNYILSCHYDCLLWTHFLKVKKSCR 341 (367)
Q Consensus 265 ~~~~--~d~~~lk~kL~~leskL~ea~~~i~kl~ee~r~~~~erd~l~~e~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (367)
+.+| ..++.||.....+|.+|++|..-+...+.+--.+++.|-..|.|+.. |.||-+=-.-|---+|...
T Consensus 26 Nd~TGYs~Ie~LK~~i~~~E~~l~~~r~~~~~aK~~Y~~ai~~Rs~sQrEvn~LLqRK~sWs~~DleRFT~Ly------- 98 (207)
T PF05546_consen 26 NDVTGYSEIEKLKKSIEELEDELEAARQEVREAKAAYDDAIQQRSSSQREVNELLQRKHSWSPADLERFTELY------- 98 (207)
T ss_pred HhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCChHHHHHHHHHH-------
Confidence 4466 78999999999999999999999999999999999999999999864 5665543444544444332
Q ss_pred hHHHHhhhhhhhhhHHH
Q 017690 342 WLLLSLHCHLAAEQELV 358 (367)
Q Consensus 342 ~~~~~~~~~~~~~~~~~ 358 (367)
-.=|-+..+|+++-
T Consensus 99 ---r~dH~~e~~e~~ak 112 (207)
T PF05546_consen 99 ---RNDHENEQAEEEAK 112 (207)
T ss_pred ---HhhhhhHHHHHHHH
Confidence 23465555555543
No 54
>PRK15253 putative fimbrial assembly chaperone protein StcB; Provisional
Probab=60.38 E-value=1.2e+02 Score=29.44 Aligned_cols=79 Identities=14% Similarity=0.269 Sum_probs=53.4
Q ss_pred CeeEEeeecCCeeEEEEEEEcCCCCeEEEEEecCC------C----CceeecCCceeeCCCCeEEEEEEeccCccCCCCC
Q 017690 11 LELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTS------P----KKYCVRPNVSIIKPKAISDFTVTMQAQRVAPPDL 80 (367)
Q Consensus 11 ~EL~F~~p~~k~~s~tLtLtN~S~~~VAFKVKTTa------P----krY~VRPn~GvI~Pgesv~I~VtLqp~~~~Ppd~ 80 (367)
.-+.|.. +....+++|.|.++.++.-.....+ | .-|.|.|+.-.|+||+...|.|...+ ...|.|.
T Consensus 40 TRvIy~~---~~k~~sv~i~N~~~~pyLvQsWvd~~~~~~~~~~~~~pFivtPPlfRl~p~~~~~lRI~~~~-~~LP~DR 115 (242)
T PRK15253 40 TRVIYPA---EKKEVVVQLVNQGEQASLVQSWIDDGNTSLPPEKIQVPFMLTPPVARVAAESGQQIKIKKMP-NSLPDNK 115 (242)
T ss_pred eEEEEeC---CCceEEEEEEcCCCCcEEEEEEEECCCCCCCcccccCCEEECCCeEEECCCCceEEEEEECC-CCCCcce
Confidence 3477775 2346799999999876443332211 1 24999999999999999999999764 3345442
Q ss_pred CCCCeEEEEEEEeCC
Q 017690 81 QCKDKFLIQGIVVPF 95 (367)
Q Consensus 81 k~kDKFLVQS~~Vp~ 95 (367)
---|-+....+|+
T Consensus 116 --ESlfwlnv~~IPp 128 (242)
T PRK15253 116 --ESLFYLNVLDIPP 128 (242)
T ss_pred --eEEEEEEEEEcCC
Confidence 2346666677775
No 55
>PF05064 Nsp1_C: Nsp1-like C-terminal region; InterPro: IPR007758 The NSP1-like protein appears to be an essential component of the nuclear pore complex, for example preribosome nuclear export requires the Nup82p-Nup159p-Nsp1p complex. The C-terminal of Nsp1 is involved in binding Nup82 [], probably via coiled-coil formation [, ]. The family is related to the rotavirus nonstructural protein NSP1 which is the least conserved protein in the rotavirus genome. Its function in the replication process is not fully understood.; GO: 0017056 structural constituent of nuclear pore, 0005643 nuclear pore; PDB: 3T97_C.
Probab=59.92 E-value=20 Score=30.80 Aligned_cols=70 Identities=24% Similarity=0.198 Sum_probs=36.2
Q ss_pred cccccccCCchhHHHHhHHhhHHHHHHHHhhhhhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhh
Q 017690 250 AEDASELKPAKDILELKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELVSFFNY 319 (367)
Q Consensus 250 ~~~~~~l~~~~~~~~~~~~~d~~~lk~kL~~leskL~ea~~~i~kl~ee~r~~~~erd~l~~e~~~l~~~ 319 (367)
...|+|+.+-=+..+..=++.|.+.-.+++.-|..|-+....|.+|..+-.......+.|.|+|.++...
T Consensus 17 ~k~Leeiin~W~~eLe~q~k~F~~qA~~V~~wDr~Lv~n~~~I~~L~~~v~~~~~~Q~~ld~~L~~ie~q 86 (116)
T PF05064_consen 17 GKTLEEIINKWNKELEEQEKEFNEQATQVNAWDRQLVENGEKISKLYSEVQKAESEQKRLDQELDFIEAQ 86 (116)
T ss_dssp --------------------------------TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777777777777788999999999999999999999999999999999999999999999998764
No 56
>PF06148 COG2: COG (conserved oligomeric Golgi) complex component, COG2; InterPro: IPR024602 This entry represents the uncharacterised N-terminal domain of subunit 2 of the COG complex. The COG complex comprises eight proteins COG1-8 and plays critical roles in Golgi structure and function [].; PDB: 2JQQ_A.
Probab=59.66 E-value=14 Score=31.84 Aligned_cols=61 Identities=21% Similarity=0.296 Sum_probs=35.1
Q ss_pred ccccccc-cCCchhHHHHhHHhhHHHHHHHHhhhhhhhhhhhHHHHHHHHHhhhhhHHHHHHH
Q 017690 249 PAEDASE-LKPAKDILELKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLK 310 (367)
Q Consensus 249 ~~~~~~~-l~~~~~~~~~~~~~d~~~lk~kL~~leskL~ea~~~i~kl~ee~r~~~~erd~l~ 310 (367)
..+.+|. |++.++.+ ..+..++.+++.++..+-.++..+...|....++++....+|..|+
T Consensus 56 dFv~Ls~~L~g~~~~i-~~l~~~L~~~~~~v~~~~~~l~~~~~~i~~~l~~~~~l~~~k~~l~ 117 (133)
T PF06148_consen 56 DFVSLSTNLVGMDEKI-EELRKPLSQFREEVESVRDELDNTQEEIEDKLEERKELREEKALLK 117 (133)
T ss_dssp -------------------HHHHHHHHHHHHHHHHHS-STTHHHHHHHHHHHHHHHHHHHT-S
T ss_pred HHHHHHHHHccHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777 77776654 4488999999999999988999888888888888877777775554
No 57
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=59.57 E-value=40 Score=31.44 Aligned_cols=71 Identities=25% Similarity=0.346 Sum_probs=52.0
Q ss_pred HHHHHHhhhhhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHH-----------HHHhhhhhccchh-hhhhhhhhhccch
Q 017690 273 ELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELV-----------SFFNYILSCHYDC-LLWTHFLKVKKSC 340 (367)
Q Consensus 273 ~lk~kL~~leskL~ea~~~i~kl~ee~r~~~~erd~l~~e~~-----------~l~~~~~~~~~~~-~~~~~~~~~~~~~ 340 (367)
+|-.--+.|-.+|++|......|+++-...+.+-..|++||. .|..++.+-|-.- .||..+.-|+..|
T Consensus 78 ~L~qvN~lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~~ke~~~~~ee~~~~~y~~~eh~rll~LWr~v~~lRr~f 157 (182)
T PF15035_consen 78 ELAQVNALLREQLEQARKANEALQEDLQKLTQDWERLRDELEQKEAEWREEEENFNQYLSSEHSRLLSLWREVVALRRQF 157 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHH
Confidence 343444457779999999999999999999998888887776 3444555555554 4799998888776
Q ss_pred hhH
Q 017690 341 RWL 343 (367)
Q Consensus 341 ~~~ 343 (367)
.=+
T Consensus 158 ~el 160 (182)
T PF15035_consen 158 AEL 160 (182)
T ss_pred HHH
Confidence 533
No 58
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=59.38 E-value=17 Score=28.25 Aligned_cols=55 Identities=13% Similarity=0.219 Sum_probs=32.2
Q ss_pred CCeeEEEEEEEcCCCCeE-EEEEecCCCCcee--ecCCc-eeeCCCCeEEEEEEeccCc
Q 017690 20 KKQSTCVIQLGNKSDQCV-AFKVKTTSPKKYC--VRPNV-SIIKPKAISDFTVTMQAQR 74 (367)
Q Consensus 20 ~k~~s~tLtLtN~S~~~V-AFKVKTTaPkrY~--VRPn~-GvI~Pgesv~I~VtLqp~~ 74 (367)
+....-.++++|..+.++ ..++.-+.|.-+. +.|.. +.|.||++..+.+.+.+..
T Consensus 4 G~~~~~~~tv~N~g~~~~~~v~~~l~~P~GW~~~~~~~~~~~l~pG~s~~~~~~V~vp~ 62 (78)
T PF10633_consen 4 GETVTVTLTVTNTGTAPLTNVSLSLSLPEGWTVSASPASVPSLPPGESVTVTFTVTVPA 62 (78)
T ss_dssp TEEEEEEEEEE--SSS-BSS-EEEEE--TTSE---EEEEE--B-TTSEEEEEEEEEE-T
T ss_pred CCEEEEEEEEEECCCCceeeEEEEEeCCCCccccCCccccccCCCCCEEEEEEEEECCC
Confidence 445677899999986542 3455445588888 45544 4799999999999998654
No 59
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=57.41 E-value=56 Score=31.59 Aligned_cols=57 Identities=16% Similarity=0.175 Sum_probs=40.2
Q ss_pred HhHHhhHHHHHHHHhhhhhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhh
Q 017690 265 LKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELVSFFNYIL 321 (367)
Q Consensus 265 ~~~~~d~~~lk~kL~~leskL~ea~~~i~kl~ee~r~~~~erd~l~~e~~~l~~~~~ 321 (367)
.++..+++.++.|++..-.....++..|.+|+.+--..+..|..|+.++..|+..+.
T Consensus 78 ~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~ 134 (312)
T PF00038_consen 78 DNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELE 134 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHH
Confidence 344566666666666666666677888888888888888888777776666666553
No 60
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=57.24 E-value=59 Score=27.02 Aligned_cols=58 Identities=17% Similarity=0.178 Sum_probs=45.0
Q ss_pred HHhhHHHHHHHHhhhhhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhcc
Q 017690 267 LAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELVSFFNYILSCH 324 (367)
Q Consensus 267 ~~~d~~~lk~kL~~leskL~ea~~~i~kl~ee~r~~~~erd~l~~e~~~l~~~~~~~~ 324 (367)
+..-+..+..++.+||.|.--.+.-|.|=..+-..+-|.+|.|..||..|+.-+.+.+
T Consensus 15 ~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~Ks~ 72 (96)
T PF08647_consen 15 LSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLSKSS 72 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhH
Confidence 3344556666777777777777777777777888888999999999999999887654
No 61
>PF00927 Transglut_C: Transglutaminase family, C-terminal ig like domain; InterPro: IPR008958 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Transglutaminases catalyse the post-translational modification of proteins at glutamine residues, with formation of isopeptide bonds. Members of the transglutaminase family usually have three domains: N-terminal (IPR001102 from INTERPRO), middle (IPR013808 from INTERPRO) and C-terminal. The middle domain is usually well conserved, but family members can display major differences in their N- and C-terminal domains, although their overall structure is conserved []. This entry represents the C-terminal domain found in transglutaminases, which consists of an immunoglobulin-like beta-sandwich consisting of seven strands in two sheets with a Greek key topology. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ].; GO: 0003810 protein-glutamine gamma-glutamyltransferase activity, 0018149 peptide cross-linking; PDB: 2XZZ_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B 1L9N_B ....
Probab=56.46 E-value=38 Score=27.73 Aligned_cols=57 Identities=21% Similarity=0.248 Sum_probs=40.7
Q ss_pred cCCeeEEEEEEEcCCCCe--------EEEEEecCCCC--ceeecCCceeeCCCCeEEEEEEeccCcc
Q 017690 19 VKKQSTCVIQLGNKSDQC--------VAFKVKTTSPK--KYCVRPNVSIIKPKAISDFTVTMQAQRV 75 (367)
Q Consensus 19 ~~k~~s~tLtLtN~S~~~--------VAFKVKTTaPk--rY~VRPn~GvI~Pgesv~I~VtLqp~~~ 75 (367)
.++.....++++|+++.+ .++-|--|.-. ....+-..+-|.||++..+.+.+.+..+
T Consensus 13 vG~d~~v~v~~~N~~~~~l~~v~~~l~~~~v~ytG~~~~~~~~~~~~~~l~p~~~~~~~~~i~p~~y 79 (107)
T PF00927_consen 13 VGQDFTVSVSFTNPSSEPLRNVSLNLCAFTVEYTGLTRDQFKKEKFEVTLKPGETKSVEVTITPSQY 79 (107)
T ss_dssp TTSEEEEEEEEEE-SSS-EECEEEEEEEEEEECTTTEEEEEEEEEEEEEE-TTEEEEEEEEE-HHSH
T ss_pred CCCCEEEEEEEEeCCcCccccceeEEEEEEEEECCcccccEeEEEcceeeCCCCEEEEEEEEEceeE
Confidence 567788999999999877 66666655332 2466778899999999999999987654
No 62
>PRK15285 putative fimbrial chaperone protein StfD; Provisional
Probab=56.22 E-value=1.7e+02 Score=28.63 Aligned_cols=80 Identities=19% Similarity=0.177 Sum_probs=53.0
Q ss_pred CeeEEeeecCCeeEEEEEEEcCCCC-eEEEEEec--CCCC----ceeecCCceeeCCCCeEEEEEEecc-CccCCCCCCC
Q 017690 11 LELKFTFEVKKQSTCVIQLGNKSDQ-CVAFKVKT--TSPK----KYCVRPNVSIIKPKAISDFTVTMQA-QRVAPPDLQC 82 (367)
Q Consensus 11 ~EL~F~~p~~k~~s~tLtLtN~S~~-~VAFKVKT--TaPk----rY~VRPn~GvI~Pgesv~I~VtLqp-~~~~Ppd~k~ 82 (367)
.-+.|.. +....+++|+|.++. ++.-.... ...+ -|.|-|+.-.|+||+...+.|...+ ....|.|.
T Consensus 32 TRVIy~~---~~~~~sv~i~N~~~~~p~LvQsWvd~~~~~~~~~pFiVtPPlfRl~p~~~~~lRI~~~~~~~~LP~DR-- 106 (250)
T PRK15285 32 TRLVFRG---EDKSISVDLKNANSKLPYLAQSWVEDEKGVKITSPLIVVPPVQRIEPSAIGQVKIQGMPALASLPQDR-- 106 (250)
T ss_pred cEEEEcC---CCceEEEEEEeCCCCCcEEEEEEeeCCCCCcccCCEEEcCCeEEECCCCceEEEEEECCCCCCCCCCc--
Confidence 3477775 344689999999865 43333221 1111 3999999999999999999999875 23445442
Q ss_pred CCeEEEEEEEeCC
Q 017690 83 KDKFLIQGIVVPF 95 (367)
Q Consensus 83 kDKFLVQS~~Vp~ 95 (367)
---|-+....+|+
T Consensus 107 ESlfwlnv~~IPp 119 (250)
T PRK15285 107 ETLFYYNVREIPP 119 (250)
T ss_pred eEEEEEEEEEcCC
Confidence 2346666667775
No 63
>PF04744 Monooxygenase_B: Monooxygenase subunit B protein; InterPro: IPR006833 Ammonia monooxygenase and the particulate methane monooxygenase are both integral membrane proteins, occurring in ammonia oxidisers and methanotrophs respectively, which are thought to be evolutionarily related []. These enzymes have a relatively wide substrate specificity and can catalyse the oxidation of a range of substrates including ammonia, methane, halogenated hydrocarbons and aromatic molecules []. These enzymes are composed of 3 subunits - A (IPR003393 from INTERPRO), B (IPR006833 from INTERPRO) and C (IPR006980 from INTERPRO) - and contain various metal centres, including copper. Particulate methane monooxygenase from Methylococcus capsulatus str. Bath is an ABC homotrimer, which contains mononuclear and dinuclear copper metal centres, and a third metal centre containing a metal ion whose identity in vivo is not certain[]. The soluble regions of these enzymes derive primarily from the B subunit. This subunit forms two antiparallel beta-barrel-like structures and contains the mono- and di- nuclear copper metal centres [].; PDB: 3CHX_E 3RFR_A 3RGB_A 1YEW_A.
Probab=55.82 E-value=54 Score=34.16 Aligned_cols=65 Identities=18% Similarity=0.229 Sum_probs=40.4
Q ss_pred eEEeCCeeEEeeecCCeeEEEEEEEcCCCCeEEEEEecCCCCc----------------------eeecCCceeeCCCCe
Q 017690 6 LDIQPLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKK----------------------YCVRPNVSIIKPKAI 63 (367)
Q Consensus 6 L~IdP~EL~F~~p~~k~~s~tLtLtN~S~~~VAFKVKTTaPkr----------------------Y~VRPn~GvI~Pges 63 (367)
+.+.-..-.|.- .++..+-+++++|+++.+|-..==+|+.-+ -.|.|+. =|.||++
T Consensus 249 V~~~v~~A~Y~v-pgR~l~~~l~VtN~g~~pv~LgeF~tA~vrFln~~v~~~~~~~P~~l~A~~gL~vs~~~-pI~PGET 326 (381)
T PF04744_consen 249 VKVKVTDATYRV-PGRTLTMTLTVTNNGDSPVRLGEFNTANVRFLNPDVPTDDPDYPDELLAERGLSVSDNS-PIAPGET 326 (381)
T ss_dssp EEEEEEEEEEES-SSSEEEEEEEEEEESSS-BEEEEEESSS-EEE-TTT-SS-S---TTTEETT-EEES--S--B-TT-E
T ss_pred eEEEEeccEEec-CCcEEEEEEEEEcCCCCceEeeeEEeccEEEeCcccccCCCCCchhhhccCcceeCCCC-CcCCCce
Confidence 444444556665 468889999999999999887733333222 2344444 4899999
Q ss_pred EEEEEEecc
Q 017690 64 SDFTVTMQA 72 (367)
Q Consensus 64 v~I~VtLqp 72 (367)
.++.|..|.
T Consensus 327 rtl~V~a~d 335 (381)
T PF04744_consen 327 RTLTVEAQD 335 (381)
T ss_dssp EEEEEEEE-
T ss_pred EEEEEEeeh
Confidence 999999874
No 64
>PF02883 Alpha_adaptinC2: Adaptin C-terminal domain; InterPro: IPR008152 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. AP (adaptor protein) complexes are found in coated vesicles and clathrin-coated pits. AP complexes connect cargo proteins and lipids to clathrin at vesicle budding sites, as well as binding accessory proteins that regulate coat assembly and disassembly (such as AP180, epsins and auxilin). There are different AP complexes in mammals. AP1 is responsible for the transport of lysosomal hydrolases between the TGN and endosomes []. AP2 associates with the plasma membrane and is responsible for endocytosis []. AP3 is responsible for protein trafficking to lysosomes and other related organelles []. AP4 is less well characterised. AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). For example, in AP1 these subunits are gamma-1-adaptin, beta-1-adaptin, mu-1 and sigma-1, while in AP2 they are alpha-adaptin, beta-2-adaptin, mu-2 and sigma-2. Each subunit has a specific function. Adaptins recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal ear (appendage) domains. Mu recognises tyrosine-based sorting signals within the cytoplasmic domains of transmembrane cargo proteins []. One function of clathrin and AP2 complex-mediated endocytosis is to regulate the number of GABA(A) receptors available at the cell surface []. GGAs (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) are a family of monomeric clathrin adaptor proteins that are conserved from yeasts to humans. GGAs regulate clathrin-mediated the transport of proteins (such as mannose 6-phosphate receptors) from the TGN to endosomes and lysosomes through interactions with TGN-sorting receptors, sometimes in conjunction with AP-1 [, ]. GGAs bind cargo, membranes, clathrin and accessory factors. GGA1, GGA2 and GGA3 all contain a domain homologous to the ear domain of gamma-adaptin. GGAs are composed of a single polypeptide with four domains: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The VHS domain is responsible for endocytosis and signal transduction, recognising transmembrane cargo through the ACLL sequence in the cytoplasmic domains of sorting receptors []. The GAT domain (also found in Tom1 proteins) interacts with ARF (ADP-ribosylation factor) to regulate membrane trafficking [], and with ubiquitin for receptor sorting []. The hinge region contains a clathrin box for recognition and binding to clathrin, similar to that found in AP adaptins. The GAE domain is similar to the AP gamma-adaptin ear domain, and is responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. This entry represents a beta-sandwich structural motif found in the appendage (ear) domain of alpha-, beta- and gamma-adaptin from AP clathrin adaptor complexes, and the GAE (gamma-adaptin ear) domain of GGA adaptor proteins. These domains have an immunoglobulin-like beta-sandwich fold containing 7 or 8 strands in 2 beta-sheets in a Greek key topology [, ]. Although these domains share a similar fold, there is little sequence identity between the alpha/beta-adaptins and gamma-adaptin/GAE. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030131 clathrin adaptor complex; PDB: 3MNM_B 3ZY7_B 1GYU_A 1GYW_B 2A7B_A 1GYV_A 2E9G_A 1E42_B 2G30_A 2IV9_B ....
Probab=54.95 E-value=1.2e+02 Score=24.95 Aligned_cols=60 Identities=25% Similarity=0.417 Sum_probs=38.7
Q ss_pred eEEeeec---CCeeEEEEEEEcCCCCeEE-EEEecCCCCceee--cCC-ceeeCCCCeEEEEEEecc
Q 017690 13 LKFTFEV---KKQSTCVIQLGNKSDQCVA-FKVKTTSPKKYCV--RPN-VSIIKPKAISDFTVTMQA 72 (367)
Q Consensus 13 L~F~~p~---~k~~s~tLtLtN~S~~~VA-FKVKTTaPkrY~V--RPn-~GvI~Pgesv~I~VtLqp 72 (367)
|.|.... +....-.++..|.+..++. |.++-..|+.|.+ .|. ...|.|+..+.-.+.+..
T Consensus 13 I~~~~~~~~~~~~~~i~~~f~N~s~~~it~f~~q~avpk~~~l~l~~~s~~~i~p~~~i~Q~~~v~~ 79 (115)
T PF02883_consen 13 IGFKSEKSPNPNQGRIKLTFGNKSSQPITNFSFQAAVPKSFKLQLQPPSSSTIPPGQQITQVIKVEN 79 (115)
T ss_dssp EEEEEEECCETTEEEEEEEEEE-SSS-BEEEEEEEEEBTTSEEEEEESS-SSB-TTTEEEEEEEEEE
T ss_pred EEEEEEecCCCCEEEEEEEEEECCCCCcceEEEEEEeccccEEEEeCCCCCeeCCCCeEEEEEEEEE
Confidence 4555543 5666789999999987776 7777666666555 455 569999988876555544
No 65
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=54.08 E-value=25 Score=30.01 Aligned_cols=36 Identities=22% Similarity=0.114 Sum_probs=28.9
Q ss_pred hhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhh
Q 017690 285 LREAEHTIRKLMEARKLATREKDMLKHELVSFFNYI 320 (367)
Q Consensus 285 L~ea~~~i~kl~ee~r~~~~erd~l~~e~~~l~~~~ 320 (367)
+.+.+.-|.+|+.+-+....|+|-||+-+++++++-
T Consensus 73 ~~~~~~ei~~L~~el~~L~~E~diLKKa~~~~~~~~ 108 (121)
T PRK09413 73 LAAAMKQIKELQRLLGKKTMENELLKEAVEYGRAKK 108 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhh
Confidence 444555678888888888899999999999998874
No 66
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=53.84 E-value=77 Score=27.83 Aligned_cols=53 Identities=25% Similarity=0.354 Sum_probs=34.5
Q ss_pred HHhhHHHHHHHHhhhhhhhhhhhHHHHHHHHHh---hhhhHHHHHHHHHHHHHHhh
Q 017690 267 LAKDFEELKLKLNVMDSQLREAEHTIRKLMEAR---KLATREKDMLKHELVSFFNY 319 (367)
Q Consensus 267 ~~~d~~~lk~kL~~leskL~ea~~~i~kl~ee~---r~~~~erd~l~~e~~~l~~~ 319 (367)
+--.++.|+..+..++..=++|..-|++|+++. +..-.+.+.|++|+..|..+
T Consensus 28 ~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~r 83 (120)
T PF12325_consen 28 LEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQR 83 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556667777777776677777777766555 55566666677777666554
No 67
>smart00809 Alpha_adaptinC2 Adaptin C-terminal domain. Adaptins are components of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. Gamma-adaptin is a subunit of the golgi adaptor. Alpha adaptin is a heterotetramer that regulates clathrin-bud formation. The carboxyl-terminal appendage of the alpha subunit regulates translocation of endocytic accessory proteins to the bud site. This Ig-fold domain is found in alpha, beta and gamma adaptins and consists of a beta-sandwich containing 7 strands in 2 beta-sheets in a greek-key topology PUBMED:10430869, PUBMED:12176391. The adaptor appendage contains an additional N-terminal strand.
Probab=52.57 E-value=91 Score=25.02 Aligned_cols=53 Identities=17% Similarity=0.266 Sum_probs=38.9
Q ss_pred CCeeEEEEEEEcCCCCeEE-EEEecCCCCceeec--CCce-eeCCCCeEEEEEEecc
Q 017690 20 KKQSTCVIQLGNKSDQCVA-FKVKTTSPKKYCVR--PNVS-IIKPKAISDFTVTMQA 72 (367)
Q Consensus 20 ~k~~s~tLtLtN~S~~~VA-FKVKTTaPkrY~VR--Pn~G-vI~Pgesv~I~VtLqp 72 (367)
+....-.+...|.+..++. |.++-..|+.+.++ |..| .|.||+.+.-.+.+..
T Consensus 17 ~~~~~i~~~~~N~s~~~it~f~~~~avpk~~~l~l~~~s~~~l~p~~~i~q~~~i~~ 73 (104)
T smart00809 17 PGLIRITLTFTNKSPSPITNFSFQAAVPKSLKLQLQPPSSPTLPPGGQITQVLKVEN 73 (104)
T ss_pred CCeEEEEEEEEeCCCCeeeeEEEEEEcccceEEEEcCCCCCccCCCCCEEEEEEEEC
Confidence 3456778899999887766 88887778877764 5544 7999987776666654
No 68
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=51.72 E-value=77 Score=27.81 Aligned_cols=57 Identities=28% Similarity=0.302 Sum_probs=28.2
Q ss_pred HhHHhhHHHHHHHHhhhhhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhh
Q 017690 265 LKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELVSFFNYIL 321 (367)
Q Consensus 265 ~~~~~d~~~lk~kL~~leskL~ea~~~i~kl~ee~r~~~~erd~l~~e~~~l~~~~~ 321 (367)
.++..+++-|+.++..++.++.-++.-...|..+-+....--..++.||.-++..+.
T Consensus 69 ~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~ 125 (151)
T PF11559_consen 69 ERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQLQ 125 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335555555555555555555555555555554444444333344444444444433
No 69
>PF02346 Vac_Fusion: Chordopoxvirus fusion protein; InterPro: IPR003436 This is a family of viral fusion proteins from the Chordopoxvirinae. A 14kDa Vaccinia virus protein has been demonstrated to function as a viral fusion protein mediating cell fusion at endosmomal (low) pH []. The protein, found in the envelope fraction of the virions, is required for fusing the outermost of the two golgi-derived membranes enveloping the virus with the plasma membrane, and its subsequent release extracellularly. The N-terminal proximal region is essential for its fusion ability.; GO: 0019064 viral envelope fusion with host membrane, 0019031 viral envelope
Probab=50.72 E-value=75 Score=24.75 Aligned_cols=54 Identities=19% Similarity=0.214 Sum_probs=44.4
Q ss_pred hHHHHHHHHhhhhhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhc
Q 017690 270 DFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELVSFFNYILSC 323 (367)
Q Consensus 270 d~~~lk~kL~~leskL~ea~~~i~kl~ee~r~~~~erd~l~~e~~~l~~~~~~~ 323 (367)
+++++..+|..||-.++.+..--....+.-..=-+.=|.|.|=|+.|-|||-=|
T Consensus 2 ~~k~~~~rl~~Lek~~~~~~~~c~~~~~~i~RLE~H~ETlRk~mv~L~kKiDvQ 55 (57)
T PF02346_consen 2 RIKDIEERLMVLEKDFRNAIKCCKENSEAIKRLEHHIETLRKYMVILAKKIDVQ 55 (57)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 567788899999999988888777777777777778899999999999998543
No 70
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins.; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process
Probab=47.26 E-value=58 Score=26.11 Aligned_cols=44 Identities=18% Similarity=0.237 Sum_probs=33.3
Q ss_pred EEEEEEEcCCCCeEEEEEecCCCCcee-ecCCceeeCCCCeEEEEEEe
Q 017690 24 TCVIQLGNKSDQCVAFKVKTTSPKKYC-VRPNVSIIKPKAISDFTVTM 70 (367)
Q Consensus 24 s~tLtLtN~S~~~VAFKVKTTaPkrY~-VRPn~GvI~Pgesv~I~VtL 70 (367)
.-.|+|.|.....+.|.|.... |. -.|..=.|.||++..+.+-+
T Consensus 21 ~l~l~l~N~g~~~~~~~v~~~~---y~~~~~~~~~v~ag~~~~~~w~l 65 (89)
T PF05506_consen 21 NLRLTLSNPGSAAVTFTVYDNA---YGGGGPWTYTVAAGQTVSLTWPL 65 (89)
T ss_pred EEEEEEEeCCCCcEEEEEEeCC---cCCCCCEEEEECCCCEEEEEEee
Confidence 5689999999999999998732 32 33445566778888888876
No 71
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=47.13 E-value=99 Score=24.84 Aligned_cols=39 Identities=23% Similarity=0.267 Sum_probs=20.4
Q ss_pred hhhhhhhhhhhHHHHH-------HHHHhhhhhHHHHHHHHHHHHHH
Q 017690 279 NVMDSQLREAEHTIRK-------LMEARKLATREKDMLKHELVSFF 317 (367)
Q Consensus 279 ~~leskL~ea~~~i~k-------l~ee~r~~~~erd~l~~e~~~l~ 317 (367)
+.||+|...|=-||.- |+++...-..|++.|++|..-|+
T Consensus 7 ~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~ 52 (72)
T PF06005_consen 7 EQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLK 52 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3445555555444444 44444444455666666666665
No 72
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=47.08 E-value=68 Score=32.98 Aligned_cols=61 Identities=10% Similarity=0.106 Sum_probs=47.8
Q ss_pred hHHHHhHHhhHHHHHHHHhhhhhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhh
Q 017690 261 DILELKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELVSFFNYIL 321 (367)
Q Consensus 261 ~~~~~~~~~d~~~lk~kL~~leskL~ea~~~i~kl~ee~r~~~~erd~l~~e~~~l~~~~~ 321 (367)
|-+..++..+....+.+|+.+..+.++|...+..++.+-..-+.|-+..|+||..--..+.
T Consensus 265 N~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~emeerg~~mt 325 (359)
T PF10498_consen 265 NNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEMEERGSSMT 325 (359)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 3355567777888888899999999999999999888888888888888888876443333
No 73
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=47.00 E-value=19 Score=23.41 Aligned_cols=20 Identities=20% Similarity=0.486 Sum_probs=17.2
Q ss_pred hHHHHHHHHhhhhhhhhhhh
Q 017690 270 DFEELKLKLNVMDSQLREAE 289 (367)
Q Consensus 270 d~~~lk~kL~~leskL~ea~ 289 (367)
+++.|+.+...||++|.+..
T Consensus 2 E~~rlr~rI~dLer~L~~C~ 21 (23)
T PF04508_consen 2 EMNRLRNRISDLERQLSECR 21 (23)
T ss_pred hHHHHHHHHHHHHHHHHHHh
Confidence 57889999999999998764
No 74
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=46.84 E-value=58 Score=36.02 Aligned_cols=69 Identities=22% Similarity=0.155 Sum_probs=58.5
Q ss_pred ccCCchhHHHHhHHhhHHHHHHHHhhhhhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhc
Q 017690 255 ELKPAKDILELKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELVSFFNYILSC 323 (367)
Q Consensus 255 ~l~~~~~~~~~~~~~d~~~lk~kL~~leskL~ea~~~i~kl~ee~r~~~~erd~l~~e~~~l~~~~~~~ 323 (367)
|.+||-|+|.+.|-..|.+|-..-..|.-.|+-+...-.||.|.-|--..|-.++|+|...-|+|-.-+
T Consensus 315 etKNALNiVKNDLIakVDeL~~E~~vLrgElea~kqak~Klee~i~elEEElk~~k~ea~~ar~~~~~~ 383 (832)
T KOG2077|consen 315 ETKNALNIVKNDLIAKVDELTCEKDVLRGELEAVKQAKLKLEEKIRELEEELKKAKAEAEDARQKAKDD 383 (832)
T ss_pred hhhhHHHHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 478999999999999999999998888888888888888888887777788888999999888875443
No 75
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=46.75 E-value=98 Score=26.89 Aligned_cols=51 Identities=24% Similarity=0.336 Sum_probs=32.7
Q ss_pred hhHHHHHHHHhhhhhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhh
Q 017690 269 KDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELVSFFNYILS 322 (367)
Q Consensus 269 ~d~~~lk~kL~~leskL~ea~~~i~kl~ee~r~~~~erd~l~~e~~~l~~~~~~ 322 (367)
+++++++..++.|... |+..-..|.+....-..+|..|+.|+..+.+++..
T Consensus 66 ~e~~~~~~~~~~l~~~---~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~r~~d 116 (132)
T PF07926_consen 66 EELQELQQEINELKAE---AESAKAELEESEASWEEQKEQLEKELSELEQRIED 116 (132)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444443 33444556666667778899999999999988753
No 76
>PF07795 DUF1635: Protein of unknown function (DUF1635); InterPro: IPR012862 The members of this family include sequences that are parts of hypothetical proteins expressed by plant species. The region in question is about 170 amino acids long.
Probab=45.89 E-value=63 Score=31.26 Aligned_cols=34 Identities=29% Similarity=0.425 Sum_probs=25.9
Q ss_pred hhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 017690 284 QLREAEHTIRKLMEARKLATREKDMLKHELVSFF 317 (367)
Q Consensus 284 kL~ea~~~i~kl~ee~r~~~~erd~l~~e~~~l~ 317 (367)
+||.=+-.|..|.+=-+.++||||..+..+..|.
T Consensus 27 ElRk~eeqi~~L~~Ll~~a~~ERDEAr~qlq~Ll 60 (214)
T PF07795_consen 27 ELRKREEQIAHLKDLLKKAYQERDEAREQLQKLL 60 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333455566677778899999999999988777
No 77
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=45.05 E-value=61 Score=28.45 Aligned_cols=44 Identities=27% Similarity=0.333 Sum_probs=33.4
Q ss_pred HhhhhhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhh
Q 017690 278 LNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELVSFFNYIL 321 (367)
Q Consensus 278 L~~leskL~ea~~~i~kl~ee~r~~~~erd~l~~e~~~l~~~~~ 321 (367)
++.|-|.|+--|.-|.-|+++-..-.++||.|-+|++.|.+...
T Consensus 18 ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e 61 (120)
T PF12325_consen 18 VERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENE 61 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666777888888888999999999999887763
No 78
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=44.98 E-value=1.2e+02 Score=24.25 Aligned_cols=52 Identities=13% Similarity=0.072 Sum_probs=36.4
Q ss_pred hHHHHHHHHhhhhhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhh
Q 017690 270 DFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELVSFFNYIL 321 (367)
Q Consensus 270 d~~~lk~kL~~leskL~ea~~~i~kl~ee~r~~~~erd~l~~e~~~l~~~~~ 321 (367)
|++.|..|+..|=.--++-...=..|+++-..-..||+.|.+=+..-|.+|.
T Consensus 1 ~L~~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvE 52 (65)
T TIGR02449 1 ELQALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVE 52 (65)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666665555555555666777777888899999888888887764
No 79
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=44.17 E-value=78 Score=30.63 Aligned_cols=43 Identities=26% Similarity=0.319 Sum_probs=22.8
Q ss_pred hhhhhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhh
Q 017690 279 NVMDSQLREAEHTIRKLMEARKLATREKDMLKHELVSFFNYIL 321 (367)
Q Consensus 279 ~~leskL~ea~~~i~kl~ee~r~~~~erd~l~~e~~~l~~~~~ 321 (367)
..|+.|-.+|+.++.+|..+.-.+..||..|.+++..+..+|.
T Consensus 50 ~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e~~~~i~ 92 (246)
T PF00769_consen 50 EELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELREAEAEIA 92 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677778888888888888888888888888777777665
No 80
>PF15456 Uds1: Up-regulated During Septation
Probab=43.71 E-value=1.3e+02 Score=26.43 Aligned_cols=31 Identities=32% Similarity=0.582 Sum_probs=26.0
Q ss_pred HhHHhhHHHHHHHHhhhhhhhhhhhHHHHHHH
Q 017690 265 LKLAKDFEELKLKLNVMDSQLREAEHTIRKLM 296 (367)
Q Consensus 265 ~~~~~d~~~lk~kL~~leskL~ea~~~i~kl~ 296 (367)
..|..=++-++.||+ +|+|+++|-..+.+|.
T Consensus 32 ~~L~~R~~~lr~kl~-le~k~RdAa~sl~~l~ 62 (124)
T PF15456_consen 32 RSLDSRLEYLRRKLA-LESKIRDAAHSLSRLY 62 (124)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhc
Confidence 457777888888888 9999999999999993
No 81
>PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function.
Probab=42.90 E-value=1.6e+02 Score=25.54 Aligned_cols=28 Identities=21% Similarity=0.354 Sum_probs=22.7
Q ss_pred EeeecCCeeEEEEEEEcCCCCeEEEEEe
Q 017690 15 FTFEVKKQSTCVIQLGNKSDQCVAFKVK 42 (367)
Q Consensus 15 F~~p~~k~~s~tLtLtN~S~~~VAFKVK 42 (367)
+...++....-.++|+|.+++.+.|+|.
T Consensus 21 L~~~P~q~~~l~v~i~N~s~~~~tv~v~ 48 (121)
T PF06030_consen 21 LKVKPGQKQTLEVRITNNSDKEITVKVS 48 (121)
T ss_pred EEeCCCCEEEEEEEEEeCCCCCEEEEEE
Confidence 3445667778899999999999999974
No 82
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=42.82 E-value=21 Score=33.09 Aligned_cols=46 Identities=30% Similarity=0.333 Sum_probs=14.6
Q ss_pred HHHHHHHHhh-------hhhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhh
Q 017690 271 FEELKLKLNV-------MDSQLREAEHTIRKLMEARKLATREKDMLKHELVSFFNYIL 321 (367)
Q Consensus 271 ~~~lk~kL~~-------leskL~ea~~~i~kl~ee~r~~~~erd~l~~e~~~l~~~~~ 321 (367)
++.+.+|||. ||+.|+|=|.+ +++..+=-.|---||||+ .+|.|+.
T Consensus 2 LeD~EsklN~AIERnalLE~ELdEKE~L----~~~~QRLkDE~RDLKqEl-~V~ek~~ 54 (166)
T PF04880_consen 2 LEDFESKLNQAIERNALLESELDEKENL----REEVQRLKDELRDLKQEL-IVQEKLR 54 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHCH----------------------
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH-HHHHHhh
Confidence 4667778775 67777664433 333222222333578888 6666554
No 83
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=42.74 E-value=86 Score=28.42 Aligned_cols=61 Identities=15% Similarity=0.261 Sum_probs=37.9
Q ss_pred hhHHHHHHHHhhhhhhhhhhhHHHHHHHHH---hhhhhHHHHHHHHHHH----HHHhhhhhccchhhh
Q 017690 269 KDFEELKLKLNVMDSQLREAEHTIRKLMEA---RKLATREKDMLKHELV----SFFNYILSCHYDCLL 329 (367)
Q Consensus 269 ~d~~~lk~kL~~leskL~ea~~~i~kl~ee---~r~~~~erd~l~~e~~----~l~~~~~~~~~~~~~ 329 (367)
.++..++..++++..+|.+|..+|..|... .-.-..+=+.||.+.. -...++....+|-.+
T Consensus 20 ~~~~~~~~e~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~~~~~~~e~~l~~~~~~~ai 87 (155)
T PF06810_consen 20 AKVDKVKEERDNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNKTAKEEYEAKLAQMKKDSAI 87 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566677888889999999999999999882 1111122334444444 444455555555444
No 84
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=42.73 E-value=1.8e+02 Score=24.38 Aligned_cols=58 Identities=19% Similarity=0.148 Sum_probs=43.8
Q ss_pred HhHHhhHHHHHHHHhhhhhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhh
Q 017690 265 LKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELVSFFNYILS 322 (367)
Q Consensus 265 ~~~~~d~~~lk~kL~~leskL~ea~~~i~kl~ee~r~~~~erd~l~~e~~~l~~~~~~ 322 (367)
..+.+++.+...=|..-+.|...|.+.+.+=+..+..-..|-..|+.++..|+..|..
T Consensus 42 ~~l~~~~~~f~~flken~~k~~rA~k~a~~e~k~~~~k~~ei~~l~~~l~~l~~~~~k 99 (126)
T PF13863_consen 42 QELEEDVIKFDKFLKENEAKRERAEKRAEEEKKKKEEKEAEIKKLKAELEELKSEISK 99 (126)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666777777888888887777777777778888888888888887765
No 85
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=42.72 E-value=66 Score=30.56 Aligned_cols=47 Identities=23% Similarity=0.262 Sum_probs=34.8
Q ss_pred HHhhhhhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhc
Q 017690 277 KLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELVSFFNYILSC 323 (367)
Q Consensus 277 kL~~leskL~ea~~~i~kl~ee~r~~~~erd~l~~e~~~l~~~~~~~ 323 (367)
|+..|+..|++|+.-+..++.+-+.+...++...+|+..|.|+|..-
T Consensus 2 K~~~l~~eld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~l 48 (237)
T PF00261_consen 2 KIQQLKDELDEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLL 48 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666677777777777777777777777788888888888888653
No 86
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=42.16 E-value=47 Score=36.15 Aligned_cols=57 Identities=21% Similarity=0.202 Sum_probs=34.3
Q ss_pred cCCeeEEEEEEEcC---C-CC-eEEEEEecCCCCceee----cCCceeeCCCCeEEEEEEeccCccCC
Q 017690 19 VKKQSTCVIQLGNK---S-DQ-CVAFKVKTTSPKKYCV----RPNVSIIKPKAISDFTVTMQAQRVAP 77 (367)
Q Consensus 19 ~~k~~s~tLtLtN~---S-~~-~VAFKVKTTaPkrY~V----RPn~GvI~Pgesv~I~VtLqp~~~~P 77 (367)
++..+.|+-||+.. + .+ -=.|||--.+.+.|.- .++-| ..-|+.+.-.|.+++. +.|
T Consensus 18 P~~~v~C~Ytlt~~~~ps~~DWIGiFKVGw~s~rdY~Tf~Wa~~p~~-~~~~s~~~~~V~F~ay-yLP 83 (546)
T PF07888_consen 18 PGTDVECHYTLTPGFHPSSKDWIGIFKVGWSSTRDYYTFVWAPVPEN-YVEGSAVNCQVQFQAY-YLP 83 (546)
T ss_pred CCCCeEEEEecCCCCCCCCCCeeEEeecCCCchhheeeEEeeccCcc-ccCCCccceEEEECcc-cCC
Confidence 45678898888652 2 23 4469997666677653 33333 3345555556777764 344
No 87
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=42.15 E-value=1.7e+02 Score=31.01 Aligned_cols=90 Identities=24% Similarity=0.321 Sum_probs=65.9
Q ss_pred hhHHHHHHHHhhhhhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhh-------hhccchhhhhhhhhh------
Q 017690 269 KDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELVSFFNYI-------LSCHYDCLLWTHFLK------ 335 (367)
Q Consensus 269 ~d~~~lk~kL~~leskL~ea~~~i~kl~ee~r~~~~erd~l~~e~~~l~~~~-------~~~~~~~~~~~~~~~------ 335 (367)
..+|.++-+-+.|-++.-+-...=.-|.-+--+|+++||.+-|+|.-.||.+ ..|.-|-+.|+...+
T Consensus 58 ~~lq~~e~ra~~L~~q~~~L~~~~~NLtkeLN~t~~~K~~imq~ll~~rrdl~rinasfrQcq~d~i~y~n~~Ry~aAIi 137 (442)
T PF06637_consen 58 SRLQATEQRADRLYSQVVGLRASQANLTKELNLTTRAKDAIMQMLLNARRDLDRINASFRQCQADRIQYTNNQRYMAAII 137 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhchhHHHHHHHHHHHHHhhhhhhHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 5677777777777776665555555677788899999999999999998864 245666666665433
Q ss_pred ------------hccchhhHHHHhhhhhh-hhhHHH
Q 017690 336 ------------VKKSCRWLLLSLHCHLA-AEQELV 358 (367)
Q Consensus 336 ------------~~~~~~~~~~~~~~~~~-~~~~~~ 358 (367)
.-+||--+++.||-|.- .|.|+.
T Consensus 138 ~sekqc~eqLke~Nksc~al~~~L~~k~Ktle~E~~ 173 (442)
T PF06637_consen 138 LSEKQCQEQLKEINKSCNALLLMLNQKAKTLEVELA 173 (442)
T ss_pred HhHhhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999998863 344444
No 88
>PF02753 PapD_C: Pili assembly chaperone PapD, C-terminal domain; InterPro: IPR016148 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors. Many interactive subunits are required to assemble pili, but their assembly only takes place after translocation across the cytoplasmic membrane. Periplasmic chaperones assist pili assembly by binding to the subunits, thereby preventing premature aggregation [, ]. Pili chaperones are structurally, and possibly evolutionarily, related to the immunoglobulin superfamily [, ]: they contain two globular domains, with a topology identical to an immunoglobulin fold. This entry represents the C-terminal domain of pili assembly chaperone, and has a beta-sandwich fold consisting of eight strands in two sheets with a Greek key topology.; GO: 0007047 cellular cell wall organization, 0030288 outer membrane-bounded periplasmic space; PDB: 2UY7_C 2UY6_A 2W07_A 3GFU_A 3F65_F 3F6L_A 3F6I_A 3GEW_B 1PDK_A 2XG4_A ....
Probab=42.01 E-value=22 Score=26.91 Aligned_cols=45 Identities=18% Similarity=0.219 Sum_probs=27.8
Q ss_pred EEEEcCCCCeEEEE-EecCCCCceeecCCceeeCCCCeEEEEEEec
Q 017690 27 IQLGNKSDQCVAFK-VKTTSPKKYCVRPNVSIIKPKAISDFTVTMQ 71 (367)
Q Consensus 27 LtLtN~S~~~VAFK-VKTTaPkrY~VRPn~GvI~Pgesv~I~VtLq 71 (367)
|++.|+|-.+|.|- ++....++=..-...+.|.|+++..+.+.-.
T Consensus 1 L~v~NpTPy~vtl~~~~~~~~~~~~~~~~~~mi~P~s~~~~~~~~~ 46 (68)
T PF02753_consen 1 LTVKNPTPYYVTLSSLKLNGGGKKKKIDNSGMIAPFSSKSFPLPAN 46 (68)
T ss_dssp EEEEE-SSS-EEEEEEEETHHHCCEECCCETEE-TTEEEEEETSTT
T ss_pred CEEECCCCcEEEEEeeeecccccccccCCceEECCCCceEEeccCC
Confidence 68999999999987 4444333322234444999999988765443
No 89
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=41.85 E-value=57 Score=29.23 Aligned_cols=12 Identities=17% Similarity=0.263 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHh
Q 017690 307 DMLKHELVSFFN 318 (367)
Q Consensus 307 d~l~~e~~~l~~ 318 (367)
..|+.-|..|+.
T Consensus 126 ~~l~~kL~~l~~ 137 (169)
T PF07106_consen 126 EELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHh
Confidence 334444444443
No 90
>PF11611 DUF4352: Domain of unknown function (DUF4352); InterPro: IPR021652 This entry is represented by Bacteriophage A118, Gp32. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents a group of putative lipoproteins of unknown function.; PDB: 3CFU_A.
Probab=41.38 E-value=98 Score=25.22 Aligned_cols=52 Identities=19% Similarity=0.193 Sum_probs=31.9
Q ss_pred CeeEEEEEEEcCCCCeEE-----EEEecCCCCceeecC---------CceeeCCCCeEEEEEEecc
Q 017690 21 KQSTCVIQLGNKSDQCVA-----FKVKTTSPKKYCVRP---------NVSIIKPKAISDFTVTMQA 72 (367)
Q Consensus 21 k~~s~tLtLtN~S~~~VA-----FKVKTTaPkrY~VRP---------n~GvI~Pgesv~I~VtLqp 72 (367)
+-..-.++++|.++..+. |++.+..-..|.... ..+-|.||+++...|.+.-
T Consensus 36 ~fv~v~v~v~N~~~~~~~~~~~~f~l~d~~g~~~~~~~~~~~~~~~~~~~~i~pG~~~~g~l~F~v 101 (123)
T PF11611_consen 36 KFVVVDVTVKNNGDEPLDFSPSDFKLYDSDGNKYDPDFSASSNDNDLFSETIKPGESVTGKLVFEV 101 (123)
T ss_dssp EEEEEEEEEEE-SSS-EEEEGGGEEEE-TT--B--EEE-CCCTTTB--EEEE-TT-EEEEEEEEEE
T ss_pred EEEEEEEEEEECCCCcEEecccceEEEeCCCCEEcccccchhccccccccEECCCCEEEEEEEEEE
Confidence 344668999999987776 678876666665432 4589999999999888864
No 91
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=40.33 E-value=1.3e+02 Score=30.05 Aligned_cols=61 Identities=20% Similarity=0.272 Sum_probs=35.6
Q ss_pred hhHHHHHHHHhhhhhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhccchhhhhhhh
Q 017690 269 KDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELVSFFNYILSCHYDCLLWTHF 333 (367)
Q Consensus 269 ~d~~~lk~kL~~leskL~ea~~~i~kl~ee~r~~~~erd~l~~e~~~l~~~~~~~~~~~~~~~~~ 333 (367)
..+..++.+++.+..+|.+.+.....|+++-.....++..++.|+..+.+... .|-.||+.
T Consensus 216 ~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~----~~r~~t~~ 276 (325)
T PF08317_consen 216 QELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIRE----ECRGWTRS 276 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhcCCCHH
Confidence 34444444444444445556666666666666666677777777777766554 34556653
No 92
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=40.32 E-value=1e+02 Score=32.06 Aligned_cols=31 Identities=26% Similarity=0.490 Sum_probs=18.8
Q ss_pred HHhhHHHHHHHHhhhhhhhhhhhHHHHHHHH
Q 017690 267 LAKDFEELKLKLNVMDSQLREAEHTIRKLME 297 (367)
Q Consensus 267 ~~~d~~~lk~kL~~leskL~ea~~~i~kl~e 297 (367)
+.+.+++|+..++.+..+|++.+..|.+|..
T Consensus 332 l~~~~~~l~~~~~~~~~~l~~l~~~l~~l~~ 362 (451)
T PF03961_consen 332 LKEKLEELEEELEELKEELEKLKKNLKKLKK 362 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 4555566666666666666666666655554
No 93
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=39.68 E-value=84 Score=34.17 Aligned_cols=56 Identities=18% Similarity=0.240 Sum_probs=26.2
Q ss_pred HHhhHHHHHHHHhhhhhhhhh----------------hhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhh
Q 017690 267 LAKDFEELKLKLNVMDSQLRE----------------AEHTIRKLMEARKLATREKDMLKHELVSFFNYILS 322 (367)
Q Consensus 267 ~~~d~~~lk~kL~~leskL~e----------------a~~~i~kl~ee~r~~~~erd~l~~e~~~l~~~~~~ 322 (367)
+.+.+++++..|+.++.||.. ++..|.++..+.....++...++.++..+++++.+
T Consensus 396 ~~~~~~~~e~el~~l~~~l~~~~~~e~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 467 (650)
T TIGR03185 396 LLKELRELEEELAEVDKKISTIPSEEQIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTLDE 467 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555554443 33344444444444444444444455555554433
No 94
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=39.51 E-value=75 Score=24.73 Aligned_cols=36 Identities=17% Similarity=0.245 Sum_probs=27.4
Q ss_pred HHhHHhhHHHHHHHHhhhhhhhhhhhHHHHHHHHHh
Q 017690 264 ELKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEAR 299 (367)
Q Consensus 264 ~~~~~~d~~~lk~kL~~leskL~ea~~~i~kl~ee~ 299 (367)
..+|..||+.|++|.+.|.+...-...-+....+|-
T Consensus 5 id~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EA 40 (56)
T PF04728_consen 5 IDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEA 40 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356889999999999999987766666666555543
No 95
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=39.48 E-value=37 Score=31.49 Aligned_cols=46 Identities=20% Similarity=0.191 Sum_probs=26.9
Q ss_pred HhhhhhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhccchh
Q 017690 278 LNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELVSFFNYILSCHYDC 327 (367)
Q Consensus 278 L~~leskL~ea~~~i~kl~ee~r~~~~erd~l~~e~~~l~~~~~~~~~~~ 327 (367)
|..||+||..|=..-.=|-+|= +||+.|+.|..-||.++..-.-+-
T Consensus 2 LeD~EsklN~AIERnalLE~EL----dEKE~L~~~~QRLkDE~RDLKqEl 47 (166)
T PF04880_consen 2 LEDFESKLNQAIERNALLESEL----DEKENLREEVQRLKDELRDLKQEL 47 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHCH--------------
T ss_pred HHHHHHHHHHHHHHhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6789999999977777777765 999999988888888776544443
No 96
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=39.43 E-value=55 Score=30.15 Aligned_cols=48 Identities=21% Similarity=0.180 Sum_probs=15.7
Q ss_pred HHHHHHHhhhhhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhh
Q 017690 272 EELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELVSFFNY 319 (367)
Q Consensus 272 ~~lk~kL~~leskL~ea~~~i~kl~ee~r~~~~erd~l~~e~~~l~~~ 319 (367)
-++..+|..++.++.+-...|..|+.+...-..+...|..||....+-
T Consensus 98 ~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~ 145 (194)
T PF08614_consen 98 VELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKA 145 (194)
T ss_dssp ----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444455555555555555555544444444555555444443
No 97
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=39.40 E-value=1.1e+02 Score=29.15 Aligned_cols=65 Identities=18% Similarity=0.290 Sum_probs=52.7
Q ss_pred cCCchhHHHHhHHhhHHHHHHHHhhhhhhhhhhhHHHHHHHHHhhhhhHHH-HHHHHHHHHHHhhh
Q 017690 256 LKPAKDILELKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREK-DMLKHELVSFFNYI 320 (367)
Q Consensus 256 l~~~~~~~~~~~~~d~~~lk~kL~~leskL~ea~~~i~kl~ee~r~~~~er-d~l~~e~~~l~~~~ 320 (367)
+.+.++.++..++.-+++++..+..|..++..-+..|..-+.+++..+.+. ..|..+|.-|+..+
T Consensus 72 i~~~~~~v~~~~~~~~~~~~~~l~~L~~ri~~L~~~i~ee~~~r~~~ie~~~~~l~~~l~~l~~~~ 137 (247)
T PF06705_consen 72 INNMQERVENQISEKQEQLQSRLDSLNDRIEALEEEIQEEKEERPQDIEELNQELVRELNELQEAF 137 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 566778888888888999999999999999999999999999988888664 36777777766544
No 98
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=39.18 E-value=1.1e+02 Score=27.79 Aligned_cols=73 Identities=26% Similarity=0.388 Sum_probs=44.1
Q ss_pred cCCchhHHHHhHHhhHHHHHHHHhhhhhhhhhhhHHHHHHHHHhhhh------------------hHH-HHHHHHHHHHH
Q 017690 256 LKPAKDILELKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLA------------------TRE-KDMLKHELVSF 316 (367)
Q Consensus 256 l~~~~~~~~~~~~~d~~~lk~kL~~leskL~ea~~~i~kl~ee~r~~------------------~~e-rd~l~~e~~~l 316 (367)
+.+........+..+.+-|+..++.|+.+|++- |.||+-+-|.- |+| +.++..|+.-|
T Consensus 67 l~~~~k~~~~~lr~~~e~L~~eie~l~~~L~~e---i~~l~a~~klD~n~eK~~~r~e~~~~~~ki~e~~~ki~~ei~~l 143 (177)
T PF07798_consen 67 LQNSRKSEFAELRSENEKLQREIEKLRQELREE---INKLRAEVKLDLNLEKGRIREEQAKQELKIQELNNKIDTEIANL 143 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444556666777777777777777763 45554433321 111 24566777888
Q ss_pred Hhhhhhccchhhhhh
Q 017690 317 FNYILSCHYDCLLWT 331 (367)
Q Consensus 317 ~~~~~~~~~~~~~~~ 331 (367)
|..|.+-.+|-+-|.
T Consensus 144 r~~iE~~K~~~lr~~ 158 (177)
T PF07798_consen 144 RTEIESLKWDTLRWL 158 (177)
T ss_pred HHHHHHHHHHHHHHH
Confidence 888888888877773
No 99
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=38.61 E-value=1.3e+02 Score=23.60 Aligned_cols=45 Identities=27% Similarity=0.381 Sum_probs=30.8
Q ss_pred HHhhHHHHHHHHhhhhhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHh
Q 017690 267 LAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELVSFFN 318 (367)
Q Consensus 267 ~~~d~~~lk~kL~~leskL~ea~~~i~kl~ee~r~~~~erd~l~~e~~~l~~ 318 (367)
+-+-+...|+-.-++++||.+|+.-+..|.. |-+.|+.||..+|.
T Consensus 16 ~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~-------ei~~L~~e~ee~r~ 60 (61)
T PF08826_consen 16 IQEELTKVKSANLAFESKLQEAEKRNRELEQ-------EIERLKKEMEELRS 60 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhhc
Confidence 3445555677777788888888887766654 45667777777764
No 100
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=37.77 E-value=1.5e+02 Score=27.82 Aligned_cols=49 Identities=22% Similarity=0.299 Sum_probs=26.9
Q ss_pred hhHHHHHHHHhhhhhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 017690 269 KDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELVSFF 317 (367)
Q Consensus 269 ~d~~~lk~kL~~leskL~ea~~~i~kl~ee~r~~~~erd~l~~e~~~l~ 317 (367)
+++.+|+.+..-.+.-+.+...-..+|+|.=....+|++.|+++|....
T Consensus 34 eei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~ 82 (201)
T PF13851_consen 34 EEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYE 82 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444445555555566666666666666666666543
No 101
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=37.43 E-value=82 Score=30.48 Aligned_cols=42 Identities=29% Similarity=0.321 Sum_probs=35.3
Q ss_pred hhhhhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhh
Q 017690 279 NVMDSQLREAEHTIRKLMEARKLATREKDMLKHELVSFFNYI 320 (367)
Q Consensus 279 ~~leskL~ea~~~i~kl~ee~r~~~~erd~l~~e~~~l~~~~ 320 (367)
..|+.++++++.-|.+|.+++..-..|...||+++..-|...
T Consensus 78 ~~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~~~ 119 (246)
T PF00769_consen 78 EQLEQELREAEAEIARLEEESERKEEEAEELQEELEEAREDE 119 (246)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357779999999999999999999999999999998888754
No 102
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=37.35 E-value=1.6e+02 Score=25.36 Aligned_cols=52 Identities=19% Similarity=0.321 Sum_probs=39.7
Q ss_pred HHhhHHHHHHHHhhhhhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHh
Q 017690 267 LAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELVSFFN 318 (367)
Q Consensus 267 ~~~d~~~lk~kL~~leskL~ea~~~i~kl~ee~r~~~~erd~l~~e~~~l~~ 318 (367)
+.+-+.+|...|..|-.++.+-...|..|.||.-+=..|-+.|..-|..+..
T Consensus 6 l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 6 LFDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5566777888888888888888888888888887777777777776666543
No 103
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=36.99 E-value=95 Score=35.64 Aligned_cols=57 Identities=19% Similarity=0.222 Sum_probs=47.3
Q ss_pred hhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhccchhhhhhhhhhhccch
Q 017690 284 QLREAEHTIRKLMEARKLATREKDMLKHELVSFFNYILSCHYDCLLWTHFLKVKKSC 340 (367)
Q Consensus 284 kL~ea~~~i~kl~ee~r~~~~erd~l~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 340 (367)
++--+...|.-++--+-+.+-|+|.||+++-.++.+...--..--.|.|-+|-+.+.
T Consensus 466 ~~tt~kt~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~Ekq~l~~qlkq~q~a 522 (1118)
T KOG1029|consen 466 DITTQKTEIEEVTKQRELMISEIDQLQARIKELQEKLQKLAPEKQELNHQLKQKQSA 522 (1118)
T ss_pred ccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhh
Confidence 333466677777777888899999999999999999999888999999999887653
No 104
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=36.13 E-value=1.5e+02 Score=25.41 Aligned_cols=52 Identities=17% Similarity=0.136 Sum_probs=47.2
Q ss_pred HHHHHHHHhhhhhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhh
Q 017690 271 FEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELVSFFNYILS 322 (367)
Q Consensus 271 ~~~lk~kL~~leskL~ea~~~i~kl~ee~r~~~~erd~l~~e~~~l~~~~~~ 322 (367)
=.+|=..|..||.+|.+--..|..|+..-..-..|-..|+-|-.-||+.+..
T Consensus 3 k~~l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~ 54 (107)
T PF06156_consen 3 KKELFDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEE 54 (107)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577788999999999999999999999999999999999999999999875
No 105
>PRK10884 SH3 domain-containing protein; Provisional
Probab=35.64 E-value=1.3e+02 Score=28.71 Aligned_cols=49 Identities=18% Similarity=0.121 Sum_probs=24.3
Q ss_pred HHHHhhhhhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhc
Q 017690 275 KLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELVSFFNYILSC 323 (367)
Q Consensus 275 k~kL~~leskL~ea~~~i~kl~ee~r~~~~erd~l~~e~~~l~~~~~~~ 323 (367)
+.++...+....+-+.--.+|+++--....|.|.|+.|+..+++.+..+
T Consensus 124 ~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~~~~ 172 (206)
T PRK10884 124 QQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTIIMQ 172 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333344444445555555555566666666666555443
No 106
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=35.45 E-value=1.2e+02 Score=30.31 Aligned_cols=13 Identities=31% Similarity=0.519 Sum_probs=6.9
Q ss_pred ccchhhhhhh-hhh
Q 017690 172 AEVFETAKFA-DEL 184 (367)
Q Consensus 172 ~~v~et~~l~-~e~ 184 (367)
.|+-|.--++ +|+
T Consensus 67 ~P~Lely~~~c~EL 80 (325)
T PF08317_consen 67 VPMLELYQFSCREL 80 (325)
T ss_pred ChHHHHHHHHHHHH
Confidence 4555555554 555
No 107
>PRK15308 putative fimbrial protein TcfA; Provisional
Probab=35.42 E-value=4.3e+02 Score=25.71 Aligned_cols=86 Identities=12% Similarity=0.129 Sum_probs=61.0
Q ss_pred CCceEEeCCeeEEeeecCCeeEEEEEEEcCCCCeEEEEEec---CCC---------------CceeecCCceeeCCCCeE
Q 017690 3 EELLDIQPLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKT---TSP---------------KKYCVRPNVSIIKPKAIS 64 (367)
Q Consensus 3 s~LL~IdP~EL~F~~p~~k~~s~tLtLtN~S~~~VAFKVKT---TaP---------------krY~VRPn~GvI~Pgesv 64 (367)
.--|.|.|-.+.+... .+..+.++|+|.++.+..++|.. ++| ..-.+.|+.-.|.||++-
T Consensus 15 aa~l~V~Pi~~~i~a~--~~~~~~v~V~N~g~~~~~vqV~v~r~~~PG~~~e~~~~~~~~~~~eLiaSP~~l~L~pg~~q 92 (234)
T PRK15308 15 RANMLVYPMAAEIGAG--REEATSLFVYSKSDHTQYVRTRIKRIEHPATPQEKEVPAGNDIETGLVVSPEKFALPAGTTR 92 (234)
T ss_pred hceEEEEEeEEEecCC--CcceEEEEEEeCCCCcEEEEEEEEEEcCCCCCCCcccccccCCCCcEEEcCceeEECCCCeE
Confidence 3456788877777642 24568999999999888777532 222 236778999999999999
Q ss_pred EEEEEeccCccCCCCCCCCCeEEEEEEEeCCC
Q 017690 65 DFTVTMQAQRVAPPDLQCKDKFLIQGIVVPFG 96 (367)
Q Consensus 65 ~I~VtLqp~~~~Ppd~k~kDKFLVQS~~Vp~g 96 (367)
.|.+..... + + .-.-|.|...+++..
T Consensus 93 ~IRli~lg~---~-~--kE~~YRl~~~pvp~~ 118 (234)
T PRK15308 93 TVRVISLQA---P-E--REEAWRVYFEPVAEL 118 (234)
T ss_pred EEEEEEcCC---C-C--cEEEEEEEEEecCCc
Confidence 999887652 1 2 235688888888753
No 108
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=35.11 E-value=1.8e+02 Score=25.33 Aligned_cols=50 Identities=20% Similarity=0.357 Sum_probs=42.4
Q ss_pred HHhhHHHHHHHHhhhhhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 017690 267 LAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELVSF 316 (367)
Q Consensus 267 ~~~d~~~lk~kL~~leskL~ea~~~i~kl~ee~r~~~~erd~l~~e~~~l 316 (367)
+-+-|.+|...++.|=.++.+-+..+..|-||.-+=..|-+.|+.-|..+
T Consensus 6 lfd~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 6 IFDALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55667888888888888999999999999999988888888888888776
No 109
>PF11221 Med21: Subunit 21 of Mediator complex; InterPro: IPR021384 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med21 has been known as Srb7 in yeasts, hSrb7 in humans and Trap 19 in Drosophila. The heterodimer of the two subunits Med7 and Med21 appears to act as a hinge between the middle and the tail regions of Mediator []. ; PDB: 1YKE_B 1YKH_B.
Probab=34.99 E-value=1.5e+02 Score=26.37 Aligned_cols=61 Identities=25% Similarity=0.219 Sum_probs=41.5
Q ss_pred chhHHHHhHHhhHHHHHHHHhhhhhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhh
Q 017690 259 AKDILELKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELVSFFNYIL 321 (367)
Q Consensus 259 ~~~~~~~~~~~d~~~lk~kL~~leskL~ea~~~i~kl~ee~r~~~~erd~l~~e~~~l~~~~~ 321 (367)
|+|++. =+++++-|=..|=.+++-=++-.+.|.+|.+|.+..-+||...-.|...|.+++.
T Consensus 75 A~dIi~--kakqIe~LIdsLPg~~~see~Q~~~i~~L~~E~~~~~~el~~~v~e~e~ll~~v~ 135 (144)
T PF11221_consen 75 ATDIIR--KAKQIEYLIDSLPGIEVSEEEQLKRIKELEEENEEAEEELQEAVKEAEELLKQVQ 135 (144)
T ss_dssp HHHHHH--HHHHHHHHHHHSTTSSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445532 3588888888888888766666677888877777777777666666666655543
No 110
>PF10845 DUF2576: Protein of unknown function (DUF2576); InterPro: IPR022556 The function of this viral family of proteins is unknown. The entry contains Orf5 from Autographa californica nuclear polyhedrosis virus (AcMNPV).
Probab=34.87 E-value=37 Score=25.55 Aligned_cols=24 Identities=25% Similarity=0.533 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHhhhh------hccchhh
Q 017690 305 EKDMLKHELVSFFNYIL------SCHYDCL 328 (367)
Q Consensus 305 erd~l~~e~~~l~~~~~------~~~~~~~ 328 (367)
.|+.|++|+..|||+.- --++||-
T Consensus 12 dreqlrrelnsLR~~vhelctRs~t~fDcN 41 (48)
T PF10845_consen 12 DREQLRRELNSLRRSVHELCTRSTTGFDCN 41 (48)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCCcchh
Confidence 58899999999999763 2457774
No 111
>PF08606 Prp19: Prp19/Pso4-like; InterPro: IPR013915 This region is found specifically in PRP19-like protein. The region represented by this protein covers the sequence implicated in self-interaction and a coiled-coiled motif []. PRP19-like proteins form an oligomer that is necessary for spliceosome assembly [].
Probab=34.58 E-value=1.1e+02 Score=24.82 Aligned_cols=41 Identities=22% Similarity=0.302 Sum_probs=26.5
Q ss_pred hhHHHHHHHHhhhhhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 017690 269 KDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELVSF 316 (367)
Q Consensus 269 ~d~~~lk~kL~~leskL~ea~~~i~kl~ee~r~~~~erd~l~~e~~~l 316 (367)
+.++..+..|+..==+-+-|-++|.+| ++|||.+++++..|
T Consensus 29 k~l~~~rqELs~aLYq~DAA~RViArl-------~kErd~ar~~l~~l 69 (70)
T PF08606_consen 29 KQLDQTRQELSHALYQHDAACRVIARL-------LKERDEAREALAEL 69 (70)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHH-------HHhHHHHHHHHHhc
Confidence 444444444444444556689999988 46788888887654
No 112
>PF03173 CHB_HEX: Putative carbohydrate binding domain; InterPro: IPR004866 This domain represents the N-terminal domain in chitobiases and beta-hexosaminidases 3.2.1.52 from EC. Chitobiases degrade chitin, which forms the exoskeleton in insects and crustaceans, and which is one of the most abundant polysaccharides on earth []. Beta-hexosaminidases are composed of either a HexA/HexB heterodimer or a HexB homodimer, and can hydrolyse diverse substrates, including GM(2)-gangliosides; mutations in this enzyme are associated with Tay-Sachs disease []. HexB is structurally similar to chitobiase, consisting of a beta sandwich structure; this structure is similar to that found in the cellulose-binding domain of cellulase from Cellulomonas fimi (IPR001919 from INTERPRO), suggesting that it may function as a carbohydrate-binding domain.; GO: 0030246 carbohydrate binding; PDB: 1C7T_A 1QBA_A 1QBB_A 1C7S_A.
Probab=34.19 E-value=35 Score=31.31 Aligned_cols=34 Identities=12% Similarity=0.211 Sum_probs=25.2
Q ss_pred EEEecCCCCceeecCCcee--eCCCCeEEEEEEecc
Q 017690 39 FKVKTTSPKKYCVRPNVSI--IKPKAISDFTVTMQA 72 (367)
Q Consensus 39 FKVKTTaPkrY~VRPn~Gv--I~Pgesv~I~VtLqp 72 (367)
|+|.-=+-+.|++.|.-|| |.||+++.|.+.-..
T Consensus 69 f~i~hinGDl~kl~Pt~~F~gl~~Ges~~I~~~~~~ 104 (164)
T PF03173_consen 69 FKITHINGDLHKLTPTAGFKGLAPGESLEIPFVGEY 104 (164)
T ss_dssp EEEEE-STTEEEEEE-TT---B-TTEEEEEEEEEES
T ss_pred eEEEEEcCeEEEEeECCCCCccCCCCEEEEEEEccc
Confidence 6676667788999999998 899999999988653
No 113
>PRK04863 mukB cell division protein MukB; Provisional
Probab=34.12 E-value=2.2e+02 Score=34.68 Aligned_cols=75 Identities=20% Similarity=0.234 Sum_probs=46.0
Q ss_pred hHHhhHHHHHHHHhhhhhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhccch----hhhhhhhhhhccch
Q 017690 266 KLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELVSFFNYILSCHYD----CLLWTHFLKVKKSC 340 (367)
Q Consensus 266 ~~~~d~~~lk~kL~~leskL~ea~~~i~kl~ee~r~~~~erd~l~~e~~~l~~~~~~~~~~----~~~~~~~~~~~~~~ 340 (367)
.+..++++|..++.+.+.+|++++..+..+.++......+-+.|+.++..+........-. .-.+...-+++.-|
T Consensus 352 ~l~~~LeELee~Lee~eeeLeeleeeleeleeEleelEeeLeeLqeqLaelqqel~elQ~el~q~qq~i~~Le~~~~~~ 430 (1486)
T PRK04863 352 RYQADLEELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQLADYQQALDVQQTRAIQYQQAVQALERAKQLC 430 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3557777777777777777777777777777666666666666655555444444333222 12345556677777
No 114
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=34.07 E-value=63 Score=30.83 Aligned_cols=47 Identities=23% Similarity=0.418 Sum_probs=30.1
Q ss_pred hhHHH--HHHHHhhhhhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHh
Q 017690 269 KDFEE--LKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELVSFFN 318 (367)
Q Consensus 269 ~d~~~--lk~kL~~leskL~ea~~~i~kl~ee~r~~~~erd~l~~e~~~l~~ 318 (367)
.|-|+ |+-.|.+||.||..|+....+- ++.+.-.-.++|.|++-|=+
T Consensus 94 ~dwEevrLkrELa~Le~~l~~~~~~~~~~---~~~~~~~~~lvk~e~EqLL~ 142 (195)
T PF12761_consen 94 TDWEEVRLKRELAELEEKLSKVEQAAESR---RSDTDSKPALVKREFEQLLD 142 (195)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhc---ccCCcchHHHHHHHHHHHHH
Confidence 45555 8889999999999988776553 22222333455666665544
No 115
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.84 E-value=2e+02 Score=23.48 Aligned_cols=52 Identities=21% Similarity=0.174 Sum_probs=42.1
Q ss_pred HHHHHHHhhhhhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhc
Q 017690 272 EELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELVSFFNYILSC 323 (367)
Q Consensus 272 ~~lk~kL~~leskL~ea~~~i~kl~ee~r~~~~erd~l~~e~~~l~~~~~~~ 323 (367)
+.|..++-.||.++-.-|.+|.-|+..---.-+.=|+++--|..|..|..+.
T Consensus 4 ~~lE~Ri~eLE~r~AfQE~tieeLn~~laEq~~~i~k~q~qlr~L~~kl~~~ 55 (72)
T COG2900 4 MELEARIIELEIRLAFQEQTIEELNDALAEQQLVIDKLQAQLRLLTEKLKDL 55 (72)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5688899999999999999999999866555556678888888888777654
No 116
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=33.38 E-value=1.6e+02 Score=32.69 Aligned_cols=18 Identities=22% Similarity=0.414 Sum_probs=12.1
Q ss_pred eeeCCCCeEEEEEEeccC
Q 017690 56 SIIKPKAISDFTVTMQAQ 73 (367)
Q Consensus 56 GvI~Pgesv~I~VtLqp~ 73 (367)
|+|.|...-+|.|..+|-
T Consensus 211 g~V~~m~~~Dv~V~I~pV 228 (652)
T COG2433 211 GVVKPMRGGDVQVRIEPV 228 (652)
T ss_pred hhcccccCCceEEEEEEh
Confidence 666677777777776653
No 117
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=33.15 E-value=2e+02 Score=33.75 Aligned_cols=78 Identities=22% Similarity=0.230 Sum_probs=49.1
Q ss_pred HHhhHHHHHHHHhhhhhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhccchhhhhhhhh-hhccchhhHH
Q 017690 267 LAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELVSFFNYILSCHYDCLLWTHFL-KVKKSCRWLL 344 (367)
Q Consensus 267 ~~~d~~~lk~kL~~leskL~ea~~~i~kl~ee~r~~~~erd~l~~e~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 344 (367)
+...+.++..++.++..+|+++...+..|..+-.....+++.|..++..+..++..+...---+...+ .....|+++-
T Consensus 847 l~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 925 (1163)
T COG1196 847 LEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERLEELEAKLERLE 925 (1163)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555666666677777777777778888888888888888887776655543322 2234444443
No 118
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=32.90 E-value=1.1e+02 Score=34.84 Aligned_cols=59 Identities=17% Similarity=0.252 Sum_probs=52.0
Q ss_pred hHHHHHHHHhhhhhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhccchhh
Q 017690 270 DFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELVSFFNYILSCHYDCL 328 (367)
Q Consensus 270 d~~~lk~kL~~leskL~ea~~~i~kl~ee~r~~~~erd~l~~e~~~l~~~~~~~~~~~~ 328 (367)
-+..|.+||..++....+...-|-+|++.-+..-+++.+||-|+.-||-++-..+++|-
T Consensus 302 E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~ 360 (775)
T PF10174_consen 302 ELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLE 360 (775)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 36677788888888888888899999999999999999999999999999988887764
No 119
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=32.89 E-value=1.6e+02 Score=30.29 Aligned_cols=56 Identities=14% Similarity=0.157 Sum_probs=35.7
Q ss_pred HHHHhHHhhHHHHHHHHhhhhhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhh
Q 017690 262 ILELKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELVSFFNYIL 321 (367)
Q Consensus 262 ~~~~~~~~d~~~lk~kL~~leskL~ea~~~i~kl~ee~r~~~~erd~l~~e~~~l~~~~~ 321 (367)
.++.++.+.++.|..++..|+.+|++..+.-.|++ ...+..+.+.+++..+..-++
T Consensus 242 ~~~~~l~~~~~~~~~~i~~l~~~l~~~~k~~~k~~----~~~~q~~~~~k~~~~~~~~~~ 297 (406)
T PF02388_consen 242 EYLESLQEKLEKLEKEIEKLEEKLEKNPKKKNKLK----ELEEQLASLEKRIEEAEELIA 297 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-THHHHHHH----HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 34466788888888888888888888773333333 345556666666666665444
No 120
>PRK01026 tetrahydromethanopterin S-methyltransferase subunit G; Provisional
Probab=32.63 E-value=53 Score=27.12 Aligned_cols=25 Identities=24% Similarity=0.521 Sum_probs=21.1
Q ss_pred HhhHHHHHHHHhhhhhhhhhhhHHH
Q 017690 268 AKDFEELKLKLNVMDSQLREAEHTI 292 (367)
Q Consensus 268 ~~d~~~lk~kL~~leskL~ea~~~i 292 (367)
.+|+.+++.||+.+|-|.|.+-.-|
T Consensus 14 ~~d~~~i~~rLD~iEeKVEftn~Ei 38 (77)
T PRK01026 14 PKDFKEIQKRLDEIEEKVEFTNAEI 38 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4899999999999999999865543
No 121
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=32.31 E-value=2.1e+02 Score=23.31 Aligned_cols=55 Identities=11% Similarity=0.234 Sum_probs=33.1
Q ss_pred EEeCCeeEEeeecCCeeEEEEEEEcCCCCeEEEEEecCCCCceeecCCceeeCCCCeEEEEEEe-ccC
Q 017690 7 DIQPLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKPKAISDFTVTM-QAQ 73 (367)
Q Consensus 7 ~IdP~EL~F~~p~~k~~s~tLtLtN~S~~~VAFKVKTTaPkrY~VRPn~GvI~Pgesv~I~VtL-qp~ 73 (367)
..+|+++.... ++ .-.|+++|..+..-.|-+.. +.+. ..|.||++..+.++- .++
T Consensus 31 ~f~P~~i~v~~--G~--~v~l~~~N~~~~~h~~~i~~-----~~~~---~~l~~g~~~~~~f~~~~~G 86 (104)
T PF13473_consen 31 GFSPSTITVKA--GQ--PVTLTFTNNDSRPHEFVIPD-----LGIS---KVLPPGETATVTFTPLKPG 86 (104)
T ss_dssp EEES-EEEEET--TC--EEEEEEEE-SSS-EEEEEGG-----GTEE---EEE-TT-EEEEEEEE-S-E
T ss_pred eEecCEEEEcC--CC--eEEEEEEECCCCcEEEEECC-----CceE---EEECCCCEEEEEEcCCCCE
Confidence 45677666654 22 35699999988888888865 1111 679999999998853 444
No 122
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=32.15 E-value=1.5e+02 Score=32.32 Aligned_cols=51 Identities=16% Similarity=0.178 Sum_probs=28.3
Q ss_pred hhHHHHHHHHhhhhhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhh
Q 017690 269 KDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELVSFFNY 319 (367)
Q Consensus 269 ~d~~~lk~kL~~leskL~ea~~~i~kl~ee~r~~~~erd~l~~e~~~l~~~ 319 (367)
+|++.|..+|+.++.++.+++.-+..+.++.....++.+.++.++..++++
T Consensus 421 e~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 471 (650)
T TIGR03185 421 EQIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTLDEKTKQ 471 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555666555555555555555555555555555444333
No 123
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=31.88 E-value=1.7e+02 Score=29.43 Aligned_cols=53 Identities=23% Similarity=0.280 Sum_probs=24.7
Q ss_pred HhhHHHHHHHHhhhhhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhh
Q 017690 268 AKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELVSFFNYI 320 (367)
Q Consensus 268 ~~d~~~lk~kL~~leskL~ea~~~i~kl~ee~r~~~~erd~l~~e~~~l~~~~ 320 (367)
.+|..++..+|+.|+..-+++...+.+|..|+-.-.+|...|+.|...|.+..
T Consensus 42 ~~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE 94 (314)
T PF04111_consen 42 EEDIEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEEE 94 (314)
T ss_dssp HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555554444444455554444444444444444444444333
No 124
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=31.73 E-value=1.2e+02 Score=25.90 Aligned_cols=39 Identities=31% Similarity=0.407 Sum_probs=21.7
Q ss_pred HHHHHhhhhhhhhhhhHHHHHHHHHhhhhhHHHHHHHHH
Q 017690 274 LKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHE 312 (367)
Q Consensus 274 lk~kL~~leskL~ea~~~i~kl~ee~r~~~~erd~l~~e 312 (367)
|-..+..++.+++++...+.+|+...+....|-..||+|
T Consensus 78 L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~E 116 (118)
T PF13815_consen 78 LSSQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKLKKE 116 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 555566666666666666666665554444444444444
No 125
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.72 E-value=1.5e+02 Score=29.50 Aligned_cols=69 Identities=20% Similarity=0.274 Sum_probs=38.3
Q ss_pred cCCchhHHHHhHHhhHHHHHHHHhhhhhhhhhhhHHHHHHHH---HhhhhhHHHHH-HHHHHHHHHhhhhhccc
Q 017690 256 LKPAKDILELKLAKDFEELKLKLNVMDSQLREAEHTIRKLME---ARKLATREKDM-LKHELVSFFNYILSCHY 325 (367)
Q Consensus 256 l~~~~~~~~~~~~~d~~~lk~kL~~leskL~ea~~~i~kl~e---e~r~~~~erd~-l~~e~~~l~~~~~~~~~ 325 (367)
..+.++.+.. |-.+++.+.+|.++++-+..+-+.-|-+|.. +.+.+|+||+. |+.-+-.+..-|.+.+|
T Consensus 47 ~~~~q~ei~~-L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~raRAmq~nG~~t~Y 119 (265)
T COG3883 47 KKNIQNEIES-LDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKKRARAMQVNGTATSY 119 (265)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHH
Confidence 3344444333 4555555555555555555544444444442 34556777754 56666777777777776
No 126
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=31.72 E-value=87 Score=28.26 Aligned_cols=55 Identities=16% Similarity=0.223 Sum_probs=28.3
Q ss_pred HHhhHHHHHHHHhhhhhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhh
Q 017690 267 LAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELVSFFNYIL 321 (367)
Q Consensus 267 ~~~d~~~lk~kL~~leskL~ea~~~i~kl~ee~r~~~~erd~l~~e~~~l~~~~~ 321 (367)
+..+.+.++..|...+..+.....-+.++..++....+...+|++.+..+..-..
T Consensus 89 ~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~~~~~~~~P~l 143 (177)
T PF13870_consen 89 LSEELERLKQELKDREEELAKLREELYRVKKERDKLRKQNKKLRQQGGLLGVPAL 143 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHH
Confidence 4455555555555555555555555555555555555555555555544443333
No 127
>TIGR01149 mtrG N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit G. coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranfersae is membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.
Probab=31.57 E-value=58 Score=26.45 Aligned_cols=24 Identities=13% Similarity=0.349 Sum_probs=20.4
Q ss_pred HhhHHHHHHHHhhhhhhhhhhhHH
Q 017690 268 AKDFEELKLKLNVMDSQLREAEHT 291 (367)
Q Consensus 268 ~~d~~~lk~kL~~leskL~ea~~~ 291 (367)
.+|+.+++.||+.+|-|.|-.-.-
T Consensus 11 ~~d~~~i~~rLd~iEeKVEf~~~E 34 (70)
T TIGR01149 11 PDEFNEVMKRLDEIEEKVEFVNGE 34 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 389999999999999999875543
No 128
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=31.31 E-value=92 Score=32.86 Aligned_cols=56 Identities=29% Similarity=0.328 Sum_probs=35.5
Q ss_pred HHhhHHHHHHHHhhhhhhhhhhhHHHHHHHHHhhhhhH--------------HHHHHHHHHHHHHhhhhhccchhh
Q 017690 267 LAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATR--------------EKDMLKHELVSFFNYILSCHYDCL 328 (367)
Q Consensus 267 ~~~d~~~lk~kL~~leskL~ea~~~i~kl~ee~r~~~~--------------erd~l~~e~~~l~~~~~~~~~~~~ 328 (367)
|.++++-||..+ .++-.-+..-|.|||=+++| |--.||||+...-.|++-+||+-.
T Consensus 279 Leesye~Lke~~------krdy~fi~etLQEERyR~erLEEqLNdlteLqQnEi~nLKqElasmeervaYQsyERa 348 (455)
T KOG3850|consen 279 LEESYERLKEQI------KRDYKFIAETLQEERYRYERLEEQLNDLTELQQNEIANLKQELASMEERVAYQSYERA 348 (455)
T ss_pred HHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555433 23334444456666654443 556789999999999999999853
No 129
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=30.93 E-value=2.3e+02 Score=22.83 Aligned_cols=26 Identities=27% Similarity=0.321 Sum_probs=21.0
Q ss_pred HHHHhHHhhHHHHHHHHhhhhhhhhh
Q 017690 262 ILELKLAKDFEELKLKLNVMDSQLRE 287 (367)
Q Consensus 262 ~~~~~~~~d~~~lk~kL~~leskL~e 287 (367)
-+...|-+.-=+||.|+.-||..|..
T Consensus 7 ~~i~~L~KENF~LKLrI~fLee~l~~ 32 (75)
T PF07989_consen 7 EQIDKLKKENFNLKLRIYFLEERLQK 32 (75)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 34566778888999999999998874
No 130
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=30.83 E-value=1.8e+02 Score=27.40 Aligned_cols=64 Identities=13% Similarity=0.176 Sum_probs=41.5
Q ss_pred HhHHhhHHHHHHHHhhhhh-------hhhhhhHHHHHHHHHhhh--------hhHHHHHHHHHHHHHHhhhhhccchhh
Q 017690 265 LKLAKDFEELKLKLNVMDS-------QLREAEHTIRKLMEARKL--------ATREKDMLKHELVSFFNYILSCHYDCL 328 (367)
Q Consensus 265 ~~~~~d~~~lk~kL~~les-------kL~ea~~~i~kl~ee~r~--------~~~erd~l~~e~~~l~~~~~~~~~~~~ 328 (367)
....+|+-.|+.+|....- +|++.+.-|-+++.+-+. +--||++|++++..+..++...-...-
T Consensus 64 ~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~~L~~L~~dknL~eReeL~~kL~~~~~~l~~~~~ki~ 142 (194)
T PF15619_consen 64 QRHNEEVRVLRERLRKSQEQERELERKLKDKDEELLKTKDELKHLKKLSEDKNLAEREELQRKLSQLEQKLQEKEKKIQ 142 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456777777777666544 455544445455544433 455799999999999988876655443
No 131
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=30.80 E-value=1.8e+02 Score=23.58 Aligned_cols=20 Identities=20% Similarity=0.355 Sum_probs=13.2
Q ss_pred EEEEEEEcCCCCeEEEEEec
Q 017690 24 TCVIQLGNKSDQCVAFKVKT 43 (367)
Q Consensus 24 s~tLtLtN~S~~~VAFKVKT 43 (367)
.-.|+|+|+++.+|-+..-|
T Consensus 3 ~~~l~v~N~s~~~v~l~f~s 22 (82)
T PF12690_consen 3 EFTLTVTNNSDEPVTLQFPS 22 (82)
T ss_dssp EEEEEEEE-SSS-EEEEESS
T ss_pred EEEEEEEeCCCCeEEEEeCC
Confidence 45778888888888777744
No 132
>PF04210 MtrG: Tetrahydromethanopterin S-methyltransferase, subunit G ; InterPro: IPR005866 This model describes the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive a sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of a methyl group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane
Probab=30.54 E-value=60 Score=26.37 Aligned_cols=25 Identities=20% Similarity=0.442 Sum_probs=21.5
Q ss_pred HhhHHHHHHHHhhhhhhhhhhhHHH
Q 017690 268 AKDFEELKLKLNVMDSQLREAEHTI 292 (367)
Q Consensus 268 ~~d~~~lk~kL~~leskL~ea~~~i 292 (367)
.+|+.++..||+.+|.|+|-+..-|
T Consensus 11 ~~~~~~i~~rLd~iEeKvEf~~~Ei 35 (70)
T PF04210_consen 11 PDDFNEIMKRLDEIEEKVEFTNAEI 35 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 4899999999999999999876554
No 133
>PHA02562 46 endonuclease subunit; Provisional
Probab=30.52 E-value=1.5e+02 Score=30.94 Aligned_cols=20 Identities=20% Similarity=0.474 Sum_probs=10.9
Q ss_pred HHhhHHHHHHHHhhhhhhhh
Q 017690 267 LAKDFEELKLKLNVMDSQLR 286 (367)
Q Consensus 267 ~~~d~~~lk~kL~~leskL~ 286 (367)
+++...+|+++++.++.++.
T Consensus 304 l~d~i~~l~~~l~~l~~~i~ 323 (562)
T PHA02562 304 IKDKLKELQHSLEKLDTAID 323 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555444
No 134
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=30.38 E-value=2.5e+02 Score=31.40 Aligned_cols=71 Identities=14% Similarity=0.163 Sum_probs=45.9
Q ss_pred HhHHhhHHHHHHHHhh-------hhhh---hhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhccchhhhhhhhh
Q 017690 265 LKLAKDFEELKLKLNV-------MDSQ---LREAEHTIRKLMEARKLATREKDMLKHELVSFFNYILSCHYDCLLWTHFL 334 (367)
Q Consensus 265 ~~~~~d~~~lk~kL~~-------lesk---L~ea~~~i~kl~ee~r~~~~erd~l~~e~~~l~~~~~~~~~~~~~~~~~~ 334 (367)
.+++.+.+++-+.|.. |+.+ +...+..|.-|-....+.-++.+.||++|..|+++...-.++|..-+-.+
T Consensus 192 ~~v~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~l~~l~~~~~~l~~~~~~~~~~~ 271 (670)
T KOG0239|consen 192 EHVTNSISELESVLKSAQEERRVLADSLGNYADLRRNIKPLEGLESTIKKKIQALQQELEELKAELKELNDQVSLLTREV 271 (670)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555544 1112 22355555555555555555559999999999999999999998765544
Q ss_pred h
Q 017690 335 K 335 (367)
Q Consensus 335 ~ 335 (367)
.
T Consensus 272 ~ 272 (670)
T KOG0239|consen 272 Q 272 (670)
T ss_pred H
Confidence 3
No 135
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=30.06 E-value=1.1e+02 Score=32.81 Aligned_cols=46 Identities=4% Similarity=0.143 Sum_probs=25.3
Q ss_pred HHHHhhhhhhhhhhhHHHHHHHHHhhhhhHHH-------HHHHHHHHHHHhhh
Q 017690 275 KLKLNVMDSQLREAEHTIRKLMEARKLATREK-------DMLKHELVSFFNYI 320 (367)
Q Consensus 275 k~kL~~leskL~ea~~~i~kl~ee~r~~~~er-------d~l~~e~~~l~~~~ 320 (367)
+++|...+.|+.|.|+.|.+|+-|..+..+.+ ++|+.|...|+..+
T Consensus 68 qSALteqQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 68 QHATTEMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 55666666666666666666654433222333 34455666665554
No 136
>PRK14163 heat shock protein GrpE; Provisional
Probab=30.06 E-value=1.1e+02 Score=29.39 Aligned_cols=43 Identities=19% Similarity=0.296 Sum_probs=30.7
Q ss_pred hHHHHHHHHhhhhhhhhhhhHHHHHHHHH----hhhhhHHHHHHHHH
Q 017690 270 DFEELKLKLNVMDSQLREAEHTIRKLMEA----RKLATREKDMLKHE 312 (367)
Q Consensus 270 d~~~lk~kL~~leskL~ea~~~i~kl~ee----~r~~~~erd~l~~e 312 (367)
+.+.|+.+|..|+.++++......++.-| ||++.+||+..++-
T Consensus 41 ~~~~l~~~l~~l~~e~~el~d~~lR~~AEfeN~rkR~~kE~e~~~~~ 87 (214)
T PRK14163 41 ATAGLTAQLDQVRTALGERTADLQRLQAEYQNYRRRVERDRVTVKEI 87 (214)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677888888888888877666666654 67777777766553
No 137
>PF13205 Big_5: Bacterial Ig-like domain
Probab=29.87 E-value=2.2e+02 Score=22.54 Aligned_cols=56 Identities=18% Similarity=0.284 Sum_probs=35.7
Q ss_pred eeEEeeecCCe-eEEEEEEEc--CCCCeEEEEEecCCCCceeecCCceeeCCCCeEEEEEEe
Q 017690 12 ELKFTFEVKKQ-STCVIQLGN--KSDQCVAFKVKTTSPKKYCVRPNVSIIKPKAISDFTVTM 70 (367)
Q Consensus 12 EL~F~~p~~k~-~s~tLtLtN--~S~~~VAFKVKTTaPkrY~VRPn~GvI~Pgesv~I~VtL 70 (367)
.|.|..+.+.. ....+.+.+ ....+|.+. ....+.+.+.|..+ +.+|..+.|.|.-
T Consensus 26 ~i~Fs~~v~~~s~~~~~~~~~~~~~~~~v~~~--~~~~~~~~i~p~~~-L~~~t~Y~v~i~~ 84 (107)
T PF13205_consen 26 VITFSEPVDPASVSSAITITDSNGSGVPVSFS--SWDGNTLTITPSQP-LKPGTTYTVTIDS 84 (107)
T ss_pred EEEECCceecCccceEEEEEecCCCcEEEEEE--EccCCEEEEEECCc-CCCCCEEEEEECC
Confidence 36777665432 234555543 344555555 33458899999955 8899999988854
No 138
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=29.85 E-value=1.4e+02 Score=27.17 Aligned_cols=54 Identities=15% Similarity=0.164 Sum_probs=26.5
Q ss_pred hhHHHHHHHHhhhhhhhhhhhHHHHHHHHHhhh-hhHHHHHHHHHHHHHHhhhhh
Q 017690 269 KDFEELKLKLNVMDSQLREAEHTIRKLMEARKL-ATREKDMLKHELVSFFNYILS 322 (367)
Q Consensus 269 ~d~~~lk~kL~~leskL~ea~~~i~kl~ee~r~-~~~erd~l~~e~~~l~~~~~~ 322 (367)
.-+-.|-.+|..++.+++++.+......+..+. ...+-+++++|+..|++++.+
T Consensus 118 ~r~~~li~~l~~~~~~~~~~~kq~~~~~~~~~~~~~~~~~~~~~ei~~lk~el~~ 172 (192)
T PF05529_consen 118 RRVHSLIKELIKLEEKLEALKKQAESASEAAEKLLKEENKKLSEEIEKLKKELEK 172 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 334445555555555555544444333332222 334555566666666666555
No 139
>KOG2685 consensus Cystoskeletal protein Tektin [Cytoskeleton]
Probab=29.30 E-value=1.5e+02 Score=31.33 Aligned_cols=56 Identities=20% Similarity=0.373 Sum_probs=45.8
Q ss_pred cCCchhHHHHhHHhhHHHHHHHHhhhhhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHh
Q 017690 256 LKPAKDILELKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELVSFFN 318 (367)
Q Consensus 256 l~~~~~~~~~~~~~d~~~lk~kL~~leskL~ea~~~i~kl~ee~r~~~~erd~l~~e~~~l~~ 318 (367)
+-.-.|..+..|+..|++|+.-+..|..||+||+.....|-. -|+.|+.|++.-.+
T Consensus 338 vELCrD~AQ~~L~~EV~~l~~t~~~L~~kL~eA~~~l~~L~~-------~~~rLe~di~~k~n 393 (421)
T KOG2685|consen 338 VELCRDQAQYRLVDEVHELDDTVAALKEKLDEAEDSLKLLVN-------HRARLERDIAIKAN 393 (421)
T ss_pred hHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhhc
Confidence 445678888899999999999999999999999999988854 35677777765443
No 140
>PRK14148 heat shock protein GrpE; Provisional
Probab=29.26 E-value=1.4e+02 Score=28.41 Aligned_cols=45 Identities=13% Similarity=0.196 Sum_probs=29.6
Q ss_pred HHhhHHHHHHHHhhhhhhhhhhhHHHHHHHHH----hhhhhHHHHHHHH
Q 017690 267 LAKDFEELKLKLNVMDSQLREAEHTIRKLMEA----RKLATREKDMLKH 311 (367)
Q Consensus 267 ~~~d~~~lk~kL~~leskL~ea~~~i~kl~ee----~r~~~~erd~l~~ 311 (367)
+.+++++|+.++..++.++++......++.-| ||++.+|++.++.
T Consensus 38 ~~~e~~~l~~~l~~l~~e~~elkd~~lR~~Ae~eN~rKR~~rE~e~~~~ 86 (195)
T PRK14148 38 VEEQLERAKDTIKELEDSCDQFKDEALRAKAEMENIRKRAERDVSNARK 86 (195)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777777777766666555544 5666666665544
No 141
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=29.06 E-value=2.3e+02 Score=30.97 Aligned_cols=63 Identities=16% Similarity=0.194 Sum_probs=44.7
Q ss_pred cCCchhHHHHhHHhhHHHHHHHHhhhhhhhhhhhHH---HHHHHHHhhhhhHHHHHHHHHHHHHHh
Q 017690 256 LKPAKDILELKLAKDFEELKLKLNVMDSQLREAEHT---IRKLMEARKLATREKDMLKHELVSFFN 318 (367)
Q Consensus 256 l~~~~~~~~~~~~~d~~~lk~kL~~leskL~ea~~~---i~kl~ee~r~~~~erd~l~~e~~~l~~ 318 (367)
|+--=+-+-+-+-+|+.+||+.+.+|+-|..||+++ |.-|+|--|+-++.-.|++-=|--++.
T Consensus 258 lk~~f~~~~~~i~~~i~~lk~~n~~l~e~i~ea~k~s~~i~~l~ek~r~l~~D~nk~~~~~~~mk~ 323 (622)
T COG5185 258 LKLGFEKFVHIINTDIANLKTQNDNLYEKIQEAMKISQKIKTLREKWRALKSDSNKYENYVNAMKQ 323 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 443333344456799999999999999999999887 555666667666666666665555543
No 142
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=28.73 E-value=2.6e+02 Score=22.45 Aligned_cols=46 Identities=15% Similarity=0.204 Sum_probs=23.2
Q ss_pred hhHHHHHHHHhhhhhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhh
Q 017690 269 KDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELVSFFNYIL 321 (367)
Q Consensus 269 ~d~~~lk~kL~~leskL~ea~~~i~kl~ee~r~~~~erd~l~~e~~~l~~~~~ 321 (367)
+-++-|+.+...|..|-.+.. +++..=-+|-..|++|-...+.+|.
T Consensus 18 eti~~Lq~e~eeLke~n~~L~-------~e~~~L~~en~~L~~e~~~~~~rl~ 63 (72)
T PF06005_consen 18 ETIALLQMENEELKEKNNELK-------EENEELKEENEQLKQERNAWQERLR 63 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444433333 4444444555666666666655554
No 143
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=28.52 E-value=2.2e+02 Score=25.96 Aligned_cols=24 Identities=29% Similarity=0.396 Sum_probs=16.3
Q ss_pred hHHhhHHHHHHHHhhhhhhhhhhh
Q 017690 266 KLAKDFEELKLKLNVMDSQLREAE 289 (367)
Q Consensus 266 ~~~~d~~~lk~kL~~leskL~ea~ 289 (367)
++..+.-.++.+++.+..+.+++.
T Consensus 122 ~li~~l~~~~~~~~~~~kq~~~~~ 145 (192)
T PF05529_consen 122 SLIKELIKLEEKLEALKKQAESAS 145 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Confidence 466777777777777777655443
No 144
>PHA02562 46 endonuclease subunit; Provisional
Probab=28.04 E-value=1.4e+02 Score=31.09 Aligned_cols=38 Identities=11% Similarity=0.071 Sum_probs=20.3
Q ss_pred hhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhh
Q 017690 284 QLREAEHTIRKLMEARKLATREKDMLKHELVSFFNYIL 321 (367)
Q Consensus 284 kL~ea~~~i~kl~ee~r~~~~erd~l~~e~~~l~~~~~ 321 (367)
++.+-+..|.++++.-....+++..|+.|+..|.....
T Consensus 338 ~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~~ 375 (562)
T PHA02562 338 KLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFV 375 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 33344444444444444455666677777776666533
No 145
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=28.04 E-value=2.6e+02 Score=30.48 Aligned_cols=69 Identities=23% Similarity=0.218 Sum_probs=43.3
Q ss_pred ccccCCchhHHHHhHHhhHHHHHHHHhhhhhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhh
Q 017690 253 ASELKPAKDILELKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELVSFFNYIL 321 (367)
Q Consensus 253 ~~~l~~~~~~~~~~~~~d~~~lk~kL~~leskL~ea~~~i~kl~ee~r~~~~erd~l~~e~~~l~~~~~ 321 (367)
.+|...-.+....|.++-+.+|-.+|..+|||..-=...-..|..--....++|+.+.+||.....+|.
T Consensus 404 ~~E~esRE~LIk~~Y~~RI~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~ 472 (518)
T PF10212_consen 404 SPEEESREQLIKSYYMSRIEELTSQLQHADSKAVHFYAECRALQKRLESAEKEKESLEEELKEANQNIS 472 (518)
T ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444456667888899999999999999876533222222322233345567777777766666554
No 146
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=27.81 E-value=2.1e+02 Score=26.96 Aligned_cols=77 Identities=13% Similarity=0.100 Sum_probs=61.3
Q ss_pred ccCCchhHHHHhHHhhHHHHHHHHhhhhhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhccchhhhhh
Q 017690 255 ELKPAKDILELKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELVSFFNYILSCHYDCLLWT 331 (367)
Q Consensus 255 ~l~~~~~~~~~~~~~d~~~lk~kL~~leskL~ea~~~i~kl~ee~r~~~~erd~l~~e~~~l~~~~~~~~~~~~~~~ 331 (367)
|+++--|+...+--+.+..||..+..|..+.+..++.+.-+..|.+.=..-=.++++|...|++......-|+.--.
T Consensus 13 ~iK~YYndIT~~NL~lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~ 89 (201)
T PF13851_consen 13 EIKNYYNDITLNNLELIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQ 89 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555788999999999999999999999999999888888888999999999999987766665433
No 147
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=27.52 E-value=2.3e+02 Score=27.83 Aligned_cols=47 Identities=21% Similarity=0.192 Sum_probs=25.4
Q ss_pred hhhhhhhhhhHHHHHHHHHhh--hhhHHHHHHHHHHHHHHhhhhhccch
Q 017690 280 VMDSQLREAEHTIRKLMEARK--LATREKDMLKHELVSFFNYILSCHYD 326 (367)
Q Consensus 280 ~leskL~ea~~~i~kl~ee~r--~~~~erd~l~~e~~~l~~~~~~~~~~ 326 (367)
.+++-+.++..-|.++++.-. ++-+|.+.|++||..+.+++.+-.++
T Consensus 63 ~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~E~~~ak~r~~~le~e 111 (239)
T COG1579 63 QLESEIQEIRERIKRAEEKLSAVKDERELRALNIEIQIAKERINSLEDE 111 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444433332 34566677777777777777665554
No 148
>KOG3564 consensus GTPase-activating protein [General function prediction only]
Probab=27.45 E-value=1.8e+02 Score=31.71 Aligned_cols=43 Identities=16% Similarity=0.275 Sum_probs=36.4
Q ss_pred HHHHhhhhhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 017690 275 KLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELVSFF 317 (367)
Q Consensus 275 k~kL~~leskL~ea~~~i~kl~ee~r~~~~erd~l~~e~~~l~ 317 (367)
..|+..||.||.-|.+.|.-+.++||.+.-++|+|.+-...++
T Consensus 62 ~tk~~~ldvklkha~~~vda~ik~rr~ae~d~~~~E~~i~~i~ 104 (604)
T KOG3564|consen 62 ETKRSALDVKLKHARNQVDAEIKRRRRAEADCEKLETQIQLIK 104 (604)
T ss_pred HHhhhhccchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3577889999999999999999999999999999877665554
No 149
>KOG4001 consensus Axonemal dynein light chain [Cytoskeleton]
Probab=27.33 E-value=1.6e+02 Score=28.88 Aligned_cols=45 Identities=22% Similarity=0.262 Sum_probs=31.2
Q ss_pred hhHHHHHHHHhhhhhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhh
Q 017690 269 KDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELVSFFNY 319 (367)
Q Consensus 269 ~d~~~lk~kL~~leskL~ea~~~i~kl~ee~r~~~~erd~l~~e~~~l~~~ 319 (367)
.|=.+|..|.+.|+.|++-++. |++.++.+.|+ +.+.|..||++-
T Consensus 199 ~~k~~Le~~ia~~k~K~e~~e~-----r~~E~r~ieEk-k~~eei~fLk~t 243 (259)
T KOG4001|consen 199 DKKKELELKIAQLKKKLETDEI-----RSEEEREIEEK-KMKEEIEFLKET 243 (259)
T ss_pred hhHHHHHHHHHHHHHHHHHHHh-----hhHHHHHHHHH-HHHHHHHHHHHH
Confidence 4556677777778778777654 55555666665 568899999763
No 150
>PRK14158 heat shock protein GrpE; Provisional
Probab=27.24 E-value=1.6e+02 Score=27.89 Aligned_cols=43 Identities=19% Similarity=0.184 Sum_probs=27.2
Q ss_pred hhHHHHHHHHhhhhhhhhhhhHHHHHHHHH----hhhhhHHHHHHHH
Q 017690 269 KDFEELKLKLNVMDSQLREAEHTIRKLMEA----RKLATREKDMLKH 311 (367)
Q Consensus 269 ~d~~~lk~kL~~leskL~ea~~~i~kl~ee----~r~~~~erd~l~~ 311 (367)
+++.+|+.+|..++.++++.+.-..++.-| ||++.+|++.+++
T Consensus 40 ~~~~~le~~l~~le~e~~el~d~~lR~~AefeN~RkR~~kE~e~~~~ 86 (194)
T PRK14158 40 DRIKELEEALAAKEAEAAANWDKYLRERADLENYRKRVQKEKEELLK 86 (194)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777777766665555544 5556666655543
No 151
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=26.99 E-value=2.1e+02 Score=28.96 Aligned_cols=26 Identities=23% Similarity=0.291 Sum_probs=12.9
Q ss_pred HHhhHHHHHHHHhhhhhhhhhhhHHH
Q 017690 267 LAKDFEELKLKLNVMDSQLREAEHTI 292 (367)
Q Consensus 267 ~~~d~~~lk~kL~~leskL~ea~~~i 292 (367)
++=-|+-||-+|..||--|-+..+.+
T Consensus 110 l~yqvd~Lkd~lee~eE~~~~~~re~ 135 (302)
T PF09738_consen 110 LMYQVDLLKDKLEELEETLAQLQREY 135 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555444444333
No 152
>PF10393 Matrilin_ccoil: Trimeric coiled-coil oligomerisation domain of matrilin; InterPro: IPR019466 This entry represents a short domain found the matrilin (cartilage matrix) proteins. It forms a coiled coil structure and contains a single cysteine residue at its start which is likely to form a di-sulphide bridge with a corresponding cysteine in an upstream EGF domain (IPR006209 from INTERPRO), thereby spanning the VWA domain of the protein (IPR002035 from INTERPRO).This domain is likely to be responsible for protein trimerisation []. ; PDB: 1AQ5_C.
Probab=26.96 E-value=1.2e+02 Score=22.75 Aligned_cols=30 Identities=20% Similarity=0.405 Sum_probs=23.9
Q ss_pred HHHhHHhhHHHHHHHHhhhhhhhhhhhHHH
Q 017690 263 LELKLAKDFEELKLKLNVMDSQLREAEHTI 292 (367)
Q Consensus 263 ~~~~~~~d~~~lk~kL~~leskL~ea~~~i 292 (367)
.|.++...+|.|..||..|-.+|+--|..|
T Consensus 17 FQ~~v~~~lq~Lt~kL~~vs~RLe~LEn~~ 46 (47)
T PF10393_consen 17 FQNKVTSALQSLTQKLDAVSKRLEALENRL 46 (47)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 356688889999999999988888776654
No 153
>PF08112 ATP-synt_E_2: ATP synthase epsilon subunit; InterPro: IPR012508 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. A-ATPases (or A1A0-ATPase) (3.6.3.14 from EC) are found exclusively in Archaea and display a close resemblance in structure and subunit composition with V-ATPases, although their function in both ATP synthesis and ATP hydrolysis is closer to that of F-ATPases []. A-ATPases are composed of two linked complexes: the A1 complex consisting of seven subunits contains the catalytic core that synthesizes/hydrolyses ATP, while the A0 complex consisting of at least two subunits forms the membrane-spanning pore []. The rotary motor in A-ATPases is composed of only two subunits, the stator subunit I and the rotor subunit C []. A-ATPases may have arisen as an adaptation to the different cellular needs and the more extreme environmental conditions faced by Archaeal species. The epsilon subunit is the smallest (7 kDa) of those found in the A1 complex. Unlike the A, B and C subunits, the epsilon subunit does not have a homologous counterpart in F- or V-ATPases []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0015986 ATP synthesis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain
Probab=26.95 E-value=2e+02 Score=22.34 Aligned_cols=41 Identities=20% Similarity=0.270 Sum_probs=21.2
Q ss_pred hhhhhhhhhhhHHH-HHHHHHhhhhhHHHHHHHHHHHHHHhhhhh
Q 017690 279 NVMDSQLREAEHTI-RKLMEARKLATREKDMLKHELVSFFNYILS 322 (367)
Q Consensus 279 ~~leskL~ea~~~i-~kl~ee~r~~~~erd~l~~e~~~l~~~~~~ 322 (367)
|+|-+||++-.+-| .+|+.|-...-.-| -.||+.++|++.+
T Consensus 14 ~~Lk~kLd~Kk~Eil~~ln~EY~kiLk~r---~~~lEevKrk~LK 55 (56)
T PF08112_consen 14 SILKSKLDEKKSEILSNLNMEYEKILKQR---RKELEEVKRKALK 55 (56)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhc
Confidence 33334444433333 45555544433222 2478889998865
No 154
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=26.88 E-value=2.5e+02 Score=29.88 Aligned_cols=58 Identities=16% Similarity=0.240 Sum_probs=44.3
Q ss_pred hHHhhHHHHHHHHhhhhhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhc
Q 017690 266 KLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELVSFFNYILSC 323 (367)
Q Consensus 266 ~~~~d~~~lk~kL~~leskL~ea~~~i~kl~ee~r~~~~erd~l~~e~~~l~~~~~~~ 323 (367)
.+-+|+.-++..|...+-.++++|.-=.+-|-|--++-+||...++|+..+++...|-
T Consensus 78 di~~qlr~~rtel~~a~~~k~~~e~er~~~~~El~~~r~e~~~v~~~~~~a~~n~~kA 135 (499)
T COG4372 78 DIRPQLRALRTELGTAQGEKRAAETEREAARSELQKARQEREAVRQELAAARQNLAKA 135 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567899999999999999999999767777676667777777777776666655543
No 155
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=26.86 E-value=1.5e+02 Score=33.19 Aligned_cols=62 Identities=18% Similarity=0.174 Sum_probs=53.4
Q ss_pred hHHHHhHHhhHHHHHHHHhhhhhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhh
Q 017690 261 DILELKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELVSFFNYILS 322 (367)
Q Consensus 261 ~~~~~~~~~d~~~lk~kL~~leskL~ea~~~i~kl~ee~r~~~~erd~l~~e~~~l~~~~~~ 322 (367)
......|-.|+.-|++.|.-+-+-=+|....|.-|....|+.-.|=..||+|.+.|+.|+..
T Consensus 417 ~~a~~rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~ 478 (697)
T PF09726_consen 417 PDAISRLEADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQN 478 (697)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445789999999999999888888888999999998899999999999999999998754
No 156
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=26.60 E-value=2.3e+02 Score=32.94 Aligned_cols=73 Identities=25% Similarity=0.263 Sum_probs=54.9
Q ss_pred CchhHHHHhHHhhHHHHHHHHhhhhhhhhhhhH---HHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhccchhhhhhhhh
Q 017690 258 PAKDILELKLAKDFEELKLKLNVMDSQLREAEH---TIRKLMEARKLATREKDMLKHELVSFFNYILSCHYDCLLWTHFL 334 (367)
Q Consensus 258 ~~~~~~~~~~~~d~~~lk~kL~~leskL~ea~~---~i~kl~ee~r~~~~erd~l~~e~~~l~~~~~~~~~~~~~~~~~~ 334 (367)
+..|.+++ ++..||..+.++++||++ +..+|-+++|+...--..|++|+--.+..|--.---.-+|.|.-
T Consensus 177 ~GrnP~iN-------q~l~klkq~~~ei~e~eke~a~yh~lLe~r~~~~~rl~~l~~elr~~~~~i~~~~~~v~l~~~lq 249 (984)
T COG4717 177 SGRNPQIN-------QLLEKLKQERNEIDEAEKEYATYHKLLESRRAEHARLAELRSELRADRDHIRALRDAVELWPRLQ 249 (984)
T ss_pred CCCChhHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 45666665 344555577778888776 56677788888888888899999999998887777777888876
Q ss_pred hhc
Q 017690 335 KVK 337 (367)
Q Consensus 335 ~~~ 337 (367)
.-|
T Consensus 250 E~k 252 (984)
T COG4717 250 EWK 252 (984)
T ss_pred HHH
Confidence 554
No 157
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=26.58 E-value=1.6e+02 Score=23.13 Aligned_cols=35 Identities=23% Similarity=0.248 Sum_probs=29.3
Q ss_pred HhHHhhHHHHHHHHhhhhhhhhhhhHHHHHHHHHh
Q 017690 265 LKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEAR 299 (367)
Q Consensus 265 ~~~~~d~~~lk~kL~~leskL~ea~~~i~kl~ee~ 299 (367)
.++..+-.++++||...|.+-++-+.-|..|+++-
T Consensus 21 ~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ 55 (61)
T PF08826_consen 21 TKVKSANLAFESKLQEAEKRNRELEQEIERLKKEM 55 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667888899999999999999999999888764
No 158
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=26.55 E-value=2.7e+02 Score=24.18 Aligned_cols=51 Identities=14% Similarity=0.062 Sum_probs=41.7
Q ss_pred HHHHHHHhhhhhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhh
Q 017690 272 EELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELVSFFNYILS 322 (367)
Q Consensus 272 ~~lk~kL~~leskL~ea~~~i~kl~ee~r~~~~erd~l~~e~~~l~~~~~~ 322 (367)
.+|=.+|..||.++..--..|..|+..--.-+.|-..|+-|-.-||+++..
T Consensus 4 ~elfd~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~ 54 (110)
T PRK13169 4 KEIFDALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEE 54 (110)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567778888888888888888888888888888888888888888888874
No 159
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=26.51 E-value=1.8e+02 Score=31.60 Aligned_cols=53 Identities=23% Similarity=0.224 Sum_probs=41.1
Q ss_pred HHhhHHHHHHHHhhhhhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhh
Q 017690 267 LAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELVSFFNYILS 322 (367)
Q Consensus 267 ~~~d~~~lk~kL~~leskL~ea~~~i~kl~ee~r~~~~erd~l~~e~~~l~~~~~~ 322 (367)
+-.|+.+|.+.|..+|++|-+|.+.---++|+ +.+|...-+-||+.|-|++..
T Consensus 492 ~~~~i~El~~~l~~~e~~L~~a~s~~~~~ke~---~e~e~~a~~~E~eklE~el~~ 544 (622)
T COG5185 492 LKHDINELTQILEKLELELSEANSKFELSKEE---NERELVAQRIEIEKLEKELND 544 (622)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hHHHHHHHHHHHHHHHHHHHH
Confidence 45677888888999999999998877777665 456777777788888877653
No 160
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=26.20 E-value=2.1e+02 Score=33.55 Aligned_cols=75 Identities=17% Similarity=0.270 Sum_probs=51.4
Q ss_pred hhHHHHHHHHhhhhhhhh----hhhHHHHHHHHHh---hhhhHHHHH-HHHHHHHHHhhhhhccchhhhhhhhh-----h
Q 017690 269 KDFEELKLKLNVMDSQLR----EAEHTIRKLMEAR---KLATREKDM-LKHELVSFFNYILSCHYDCLLWTHFL-----K 335 (367)
Q Consensus 269 ~d~~~lk~kL~~leskL~----ea~~~i~kl~ee~---r~~~~erd~-l~~e~~~l~~~~~~~~~~~~~~~~~~-----~ 335 (367)
+|+.|++.+|+.+|+||. ++++.+.|+.|.- ...+|-|++ +-+=|.-|.++|.+---+-.-|..-+ |
T Consensus 976 eelSe~qvRldmaEkkLss~~k~~~h~v~~~~ek~ee~~a~lr~Ke~efeetmdaLq~di~~lEsek~elKqrl~~~~~k 1055 (1243)
T KOG0971|consen 976 EELSEAQVRLDLAEKKLSSAAKDADHRVEKVQEKLEETQALLRKKEKEFEETMDALQADIDQLESEKAELKQRLNSQSKK 1055 (1243)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhcccc
Confidence 689999999999999998 8888888887543 333333322 33446667777777777777777766 5
Q ss_pred hccchhhH
Q 017690 336 VKKSCRWL 343 (367)
Q Consensus 336 ~~~~~~~~ 343 (367)
+.+..+|.
T Consensus 1056 ~q~~s~~~ 1063 (1243)
T KOG0971|consen 1056 TQEGSRGP 1063 (1243)
T ss_pred cCccccCC
Confidence 55555664
No 161
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=25.84 E-value=66 Score=31.41 Aligned_cols=27 Identities=30% Similarity=0.414 Sum_probs=21.7
Q ss_pred HHHHHHHhhhhhhhhhhhHHHHHHHHH
Q 017690 272 EELKLKLNVMDSQLREAEHTIRKLMEA 298 (367)
Q Consensus 272 ~~lk~kL~~leskL~ea~~~i~kl~ee 298 (367)
++|+.+|..++.++++.+.+|.||-++
T Consensus 2 ~~lq~~l~~l~~~~~~~~~L~~kLE~D 28 (248)
T PF08172_consen 2 EELQKELSELEAKLEEQKELNAKLEND 28 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678888888888888888888888653
No 162
>PRK03918 chromosome segregation protein; Provisional
Probab=25.83 E-value=1.6e+02 Score=32.52 Aligned_cols=37 Identities=19% Similarity=0.199 Sum_probs=16.8
Q ss_pred hhhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 017690 281 MDSQLREAEHTIRKLMEARKLATREKDMLKHELVSFF 317 (367)
Q Consensus 281 leskL~ea~~~i~kl~ee~r~~~~erd~l~~e~~~l~ 317 (367)
++.+..+....|.+|+.+......+.+.|++.|..|.
T Consensus 396 l~~~~~~l~~~i~~l~~~~~~~~~~i~eL~~~l~~L~ 432 (880)
T PRK03918 396 LEKAKEEIEEEISKITARIGELKKEIKELKKAIEELK 432 (880)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344444444444444444455555555444
No 163
>PF00553 CBM_2: Cellulose binding domain; InterPro: IPR001919 The microbial degradation of cellulose and xylans requires several types of enzyme such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) []. Structurally, cellulases and xylanases generally consist of a catalytic domain joined to a cellulose-binding domain (CBD) by a short linker sequence rich in proline and/or hydroxy-amino acids. The CBD domain is found either at the N-terminal or at the C-terminal extremity of these enzymes. As it is shown in the following schematic representation, there are two conserved cysteines in this CBD domain - one at each extremity of the domain - which have been shown [] to be involved in a disulphide bond. There are also four conserved tryptophan, two are involved in cellulose binding. The CBD of a number of bacterial cellulases has been shown to consist of about 105 amino acid residues [, ]. +-------------------------------------------------+ | | xCxxxxWxxxxxNxxxWxxxxxxxWxxxxxxxxWNxxxxxGxxxxxxxxxxCx 'C': conserved cysteine involved in a disulphide bond. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process; PDB: 2CZN_A 2CWR_A 1HEH_C 1HEJ_C 3NDZ_E 3NDY_E 2XBD_A 1E5C_A 1XBD_A 1E5B_A ....
Probab=25.78 E-value=1.4e+02 Score=24.50 Aligned_cols=53 Identities=15% Similarity=0.140 Sum_probs=34.2
Q ss_pred CeeEEEEEEEcCCCCeEE-EEEecC-----------------CCCceeecCCc--eeeCCCCeEEEEEEeccC
Q 017690 21 KQSTCVIQLGNKSDQCVA-FKVKTT-----------------SPKKYCVRPNV--SIIKPKAISDFTVTMQAQ 73 (367)
Q Consensus 21 k~~s~tLtLtN~S~~~VA-FKVKTT-----------------aPkrY~VRPn~--GvI~Pgesv~I~VtLqp~ 73 (367)
......|+|+|.++..+. ++|.=+ .-..|.|+|.. |.|.||+++.|-+.....
T Consensus 13 ~Gf~~~v~v~N~~~~~i~~W~v~~~~~~~~~i~~~Wna~~s~~g~~~~v~~~~wn~~i~~G~s~~~Gf~~~~~ 85 (101)
T PF00553_consen 13 GGFQGEVTVTNNGSSPINGWTVTFTFPSGQTITSSWNATVSQSGNTVTVTNPSWNGTIAPGGSVTFGFQASGS 85 (101)
T ss_dssp SEEEEEEEEEESSSSTEESEEEEEEESTTEEEEEEESCEEEEETTEEEEEESSTCSEEEESEEEEEEEEEEES
T ss_pred CCeEEEEEEEECCCCccCCEEEEEEeCCCCEEeeeeccEEEecCCEEEEEcCCcCcccCCCCeEEEEEEEeCC
Confidence 445568889998876542 332221 12458888654 799999998876665543
No 164
>PRK02201 putative inner membrane protein translocase component YidC; Provisional
Probab=25.68 E-value=88 Score=32.27 Aligned_cols=40 Identities=20% Similarity=0.283 Sum_probs=27.1
Q ss_pred hhHHHHHHHHhhhhhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhh
Q 017690 269 KDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELVSFFNY 319 (367)
Q Consensus 269 ~d~~~lk~kL~~leskL~ea~~~i~kl~ee~r~~~~erd~l~~e~~~l~~~ 319 (367)
...++|+-+++.+..|.+++ +.+.+++.++|+||..|-|+
T Consensus 160 ~km~~lqPel~~Iq~Kyk~~-----------~~d~~~~~k~q~e~~~Lykk 199 (357)
T PRK02201 160 EKQEELQGKKAKIDAKYKDY-----------KKDKQMKQRKQQEIQELYKK 199 (357)
T ss_pred HHHHHhhHHHHHHHHHHhcc-----------cCCHHHHHHHHHHHHHHHHH
Confidence 44555555555555555433 45778899999999988775
No 165
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=25.63 E-value=2.7e+02 Score=30.99 Aligned_cols=71 Identities=15% Similarity=0.295 Sum_probs=61.0
Q ss_pred HhHHhhHHHHHHHHhhhhhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhccchhhhhhhhhh
Q 017690 265 LKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELVSFFNYILSCHYDCLLWTHFLK 335 (367)
Q Consensus 265 ~~~~~d~~~lk~kL~~leskL~ea~~~i~kl~ee~r~~~~erd~l~~e~~~l~~~~~~~~~~~~~~~~~~~ 335 (367)
..+.+.|+.|.+.++.+++.|+..+.-|..-.-++-.+-.++..++|.=+.|+-+-..|.-+|-....+.+
T Consensus 82 ~~L~~everLraei~~l~~~I~~~e~e~~~~e~~~~q~~~~~~~~~~k~~LL~Ay~q~c~~~~~~l~e~~~ 152 (632)
T PF14817_consen 82 RELEKEVERLRAEIQELDKEIESREREVSRQEASREQMLDKISDSRHKQLLLEAYSQQCEEQRRILREYTK 152 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788999999999999999999999999888888888899999999999999998888888776665543
No 166
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=25.61 E-value=2.6e+02 Score=30.18 Aligned_cols=69 Identities=14% Similarity=0.238 Sum_probs=58.8
Q ss_pred chhHHHHhHHhhHHHHHHHHhhhhhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhccchh
Q 017690 259 AKDILELKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELVSFFNYILSCHYDC 327 (367)
Q Consensus 259 ~~~~~~~~~~~d~~~lk~kL~~leskL~ea~~~i~kl~ee~r~~~~erd~l~~e~~~l~~~~~~~~~~~ 327 (367)
.+...-+.+-..++++...|...+.+..+-...+..|+.+-..+-+.=+.++++|-..+|++.+++.--
T Consensus 369 ~~~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR~lek~nLPG 437 (560)
T PF06160_consen 369 EQQVPYSEIQEELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKLREIKRRLEKSNLPG 437 (560)
T ss_pred cCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 333444557778888888899999999999999999999999999999999999999999999987643
No 167
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=25.59 E-value=3.1e+02 Score=26.47 Aligned_cols=61 Identities=20% Similarity=0.250 Sum_probs=32.6
Q ss_pred HHhhHHHHHHHHhhhhhhhhhhhHHHHHHH----HHhhhhhHHHHHHHHHHHHHHhhhhhccchh
Q 017690 267 LAKDFEELKLKLNVMDSQLREAEHTIRKLM----EARKLATREKDMLKHELVSFFNYILSCHYDC 327 (367)
Q Consensus 267 ~~~d~~~lk~kL~~leskL~ea~~~i~kl~----ee~r~~~~erd~l~~e~~~l~~~~~~~~~~~ 327 (367)
+...++.|..+|+.+..+....+..|.-|. .+.+.--..-..|..|+..+|..+..+..++
T Consensus 221 ~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i~~le~el~~l~~~~~~~~~ey 285 (312)
T PF00038_consen 221 LRRQIQSLQAELESLRAKNASLERQLRELEQRLDEEREEYQAEIAELEEELAELREEMARQLREY 285 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444332 2223233334567778888888888777665
No 168
>PF12443 AKNA: AT-hook-containing transcription factor; InterPro: IPR022150 This domain family is found in eukaryotes, and is approximately 110 amino acids in length. This family contains a transcription factor which regulates the expression of the costimulatory molecules on lymphocytes.
Probab=25.57 E-value=89 Score=27.21 Aligned_cols=39 Identities=33% Similarity=0.374 Sum_probs=34.1
Q ss_pred hhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhccchhhh
Q 017690 284 QLREAEHTIRKLMEARKLATREKDMLKHELVSFFNYILSCHYDCLL 329 (367)
Q Consensus 284 kL~ea~~~i~kl~ee~r~~~~erd~l~~e~~~l~~~~~~~~~~~~~ 329 (367)
|.+|-|.||-||.|-. |.||-.|..+.++|.-++.|++.
T Consensus 46 ~~~ege~~~qkL~eqt-------eeLK~kvqe~sk~i~~~~~~~~q 84 (106)
T PF12443_consen 46 KIREGEQMIQKLGEQT-------EELKDKVQEFSKRIEQDSPDHLQ 84 (106)
T ss_pred cchHHHHHHHHHHHHH-------HHHHHHHHHHhcCcCCCCccccc
Confidence 6688999999998753 78999999999999999999775
No 169
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants. Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].
Probab=25.50 E-value=1.3e+02 Score=32.32 Aligned_cols=65 Identities=23% Similarity=0.249 Sum_probs=41.0
Q ss_pred cCCchhHHHHhHHhhHHHHHH-----------HHhhhhhhhhh-------hhHHHHHHHHHhh----------hhhHHHH
Q 017690 256 LKPAKDILELKLAKDFEELKL-----------KLNVMDSQLRE-------AEHTIRKLMEARK----------LATREKD 307 (367)
Q Consensus 256 l~~~~~~~~~~~~~d~~~lk~-----------kL~~leskL~e-------a~~~i~kl~ee~r----------~~~~erd 307 (367)
.+++.......|+..+.-|+. .=-.|..+|+. |+-..++|+|+-- ..-||-+
T Consensus 379 ~kG~~~rF~~slaaEiSalr~erEkEr~~l~~eNk~L~~QLrDTAEAVqAagEllvrl~eaeea~~~a~~r~~~~eqe~e 458 (488)
T PF06548_consen 379 VKGAESRFINSLAAEISALRAEREKERRFLKDENKGLQIQLRDTAEAVQAAGELLVRLREAEEAASVAQERAMDAEQENE 458 (488)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 344455555666666655554 33345556654 6667777776543 3457788
Q ss_pred HHHHHHHHHHhhh
Q 017690 308 MLKHELVSFFNYI 320 (367)
Q Consensus 308 ~l~~e~~~l~~~~ 320 (367)
+|+++|.-|+||-
T Consensus 459 k~~kqiekLK~kh 471 (488)
T PF06548_consen 459 KAKKQIEKLKRKH 471 (488)
T ss_pred HHHHHHHHHHHHH
Confidence 8999999998874
No 170
>PRK14143 heat shock protein GrpE; Provisional
Probab=25.38 E-value=1.7e+02 Score=28.50 Aligned_cols=44 Identities=23% Similarity=0.388 Sum_probs=27.9
Q ss_pred HhhHHHHHHHHhhhhhhhhhhhHHHHHHHHH----hhhhhHHHHHHHH
Q 017690 268 AKDFEELKLKLNVMDSQLREAEHTIRKLMEA----RKLATREKDMLKH 311 (367)
Q Consensus 268 ~~d~~~lk~kL~~leskL~ea~~~i~kl~ee----~r~~~~erd~l~~ 311 (367)
.+.+..|+.+|..++.++++......++.-+ ||++.+|++.++.
T Consensus 66 ~~~~~~l~~el~~l~~e~~elkd~~lR~~AdfeN~RKR~~kE~e~~~~ 113 (238)
T PRK14143 66 AARLAQLEQELESLKQELEELNSQYMRIAADFDNFRKRTSREQEDLRL 113 (238)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455667777777777777666655555544 6667777666554
No 171
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=25.37 E-value=2.7e+02 Score=25.77 Aligned_cols=44 Identities=16% Similarity=0.194 Sum_probs=31.6
Q ss_pred hhhhhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhh
Q 017690 279 NVMDSQLREAEHTIRKLMEARKLATREKDMLKHELVSFFNYILS 322 (367)
Q Consensus 279 ~~leskL~ea~~~i~kl~ee~r~~~~erd~l~~e~~~l~~~~~~ 322 (367)
-.|+-.+++++..|.+++..--..+..+.+|++++..+.+.+.+
T Consensus 26 ~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~ 69 (221)
T PF04012_consen 26 KMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEK 69 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777777777777777777777777777777776654
No 172
>KOG3863 consensus bZIP transcription factor NRF1 [Transcription]
Probab=25.36 E-value=1.5e+02 Score=32.75 Aligned_cols=66 Identities=24% Similarity=0.347 Sum_probs=49.8
Q ss_pred CCchhHHHHhHHhhHHHHHHHHhhhhhhhh---------------------------hhhHHHHHHHHHhhhhhHHHHHH
Q 017690 257 KPAKDILELKLAKDFEELKLKLNVMDSQLR---------------------------EAEHTIRKLMEARKLATREKDML 309 (367)
Q Consensus 257 ~~~~~~~~~~~~~d~~~lk~kL~~leskL~---------------------------ea~~~i~kl~ee~r~~~~erd~l 309 (367)
+++..+.-+ =.+||++|++|.--=|.||. .-|.-|.+|+-|.+.-.+||+.+
T Consensus 459 F~vd~IinL-p~~dFne~ls~~~lte~QLslIrDIRRRgKNkvAAQnCRKRKLd~I~nLE~ev~~l~~eKeqLl~Er~~~ 537 (604)
T KOG3863|consen 459 FSVDEIINL-PVDDFNEMLSKYKLTEEQLSLIRDIRRRGKNKVAAQNCRKRKLDCILNLEDEVEKLQKEKEQLLRERDEL 537 (604)
T ss_pred CchHHhcCC-cHHHHHHHHHhcccCHHHHHHhhccccccccchhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455544322 45889999776554444442 36788999999999999999999
Q ss_pred HHHHHHHHhhhhhc
Q 017690 310 KHELVSFFNYILSC 323 (367)
Q Consensus 310 ~~e~~~l~~~~~~~ 323 (367)
..+|-.++.+++.-
T Consensus 538 d~~L~~~kqqls~L 551 (604)
T KOG3863|consen 538 DSTLGVMKQQLSEL 551 (604)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999988743
No 173
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=25.31 E-value=1.9e+02 Score=34.47 Aligned_cols=75 Identities=23% Similarity=0.240 Sum_probs=58.4
Q ss_pred HHhhHHHHHHHHhhh---------------------hhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhccc
Q 017690 267 LAKDFEELKLKLNVM---------------------DSQLREAEHTIRKLMEARKLATREKDMLKHELVSFFNYILSCHY 325 (367)
Q Consensus 267 ~~~d~~~lk~kL~~l---------------------eskL~ea~~~i~kl~ee~r~~~~erd~l~~e~~~l~~~~~~~~~ 325 (367)
+.+++++||.+|..+ .-++.++++-+-+|+.+-|..-+-..++-|+++.++.-.+++++
T Consensus 519 ~~~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~~k~e~~~~~k~l~~~~~e~~~~~~~~~~~rqrveE~ks~~~~~~s 598 (1293)
T KOG0996|consen 519 GLKKVEELKGKLLASSESLKEKKTELDDLKEELPSLKQELKEKEKELPKLRKEERNLKSQLNKLRQRVEEAKSSLSSSRS 598 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 566777777777652 22777888888888888888888888999999999998888888
Q ss_pred hhhhhhhhhhhccchh
Q 017690 326 DCLLWTHFLKVKKSCR 341 (367)
Q Consensus 326 ~~~~~~~~~~~~~~~~ 341 (367)
---.-.-..+.|++-|
T Consensus 599 ~~kVl~al~r~kesG~ 614 (1293)
T KOG0996|consen 599 RNKVLDALMRLKESGR 614 (1293)
T ss_pred hhHHHHHHHHHHHcCC
Confidence 7766666677777654
No 174
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=25.29 E-value=2.5e+02 Score=30.79 Aligned_cols=66 Identities=20% Similarity=0.302 Sum_probs=43.3
Q ss_pred HHhhHHHHHHHHhhhhhhhhhhhHHHHHHHHH-------hhhhhHHHHHHHHHHHHHHhhhhhccchhhhhhh
Q 017690 267 LAKDFEELKLKLNVMDSQLREAEHTIRKLMEA-------RKLATREKDMLKHELVSFFNYILSCHYDCLLWTH 332 (367)
Q Consensus 267 ~~~d~~~lk~kL~~leskL~ea~~~i~kl~ee-------~r~~~~erd~l~~e~~~l~~~~~~~~~~~~~~~~ 332 (367)
|-+.++.|+.++..|+..|+.++....+|.++ .-.-+.|++.|+.+...++.+|..-.-|.--+++
T Consensus 162 Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~~~ri~~LEedi~~l~q 234 (546)
T PF07888_consen 162 LEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQLAEARQRIRELEEDIKTLTQ 234 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566777777777777777766666665543 3345667777777777777777766666554443
No 175
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=25.26 E-value=2.4e+02 Score=26.56 Aligned_cols=50 Identities=14% Similarity=0.194 Sum_probs=22.7
Q ss_pred HHHHHHHhhhhhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhh
Q 017690 272 EELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELVSFFNYIL 321 (367)
Q Consensus 272 ~~lk~kL~~leskL~ea~~~i~kl~ee~r~~~~erd~l~~e~~~l~~~~~ 321 (367)
+.++.++..++.+++.....|.+++++-...-++-+.+++++...+..+.
T Consensus 59 ~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~ 108 (302)
T PF10186_consen 59 QQLKREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLS 108 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444444444443
No 176
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=25.14 E-value=1.8e+02 Score=29.72 Aligned_cols=45 Identities=27% Similarity=0.343 Sum_probs=21.7
Q ss_pred HHHHHHhhhhhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 017690 273 ELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELVSFF 317 (367)
Q Consensus 273 ~lk~kL~~leskL~ea~~~i~kl~ee~r~~~~erd~l~~e~~~l~ 317 (367)
+|..++.+++.+.+..+..+..|.++.....++-++|++|+..|+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 49 (389)
T PRK03992 5 ALEERNSELEEQIRQLELKLRDLEAENEKLERELERLKSELEKLK 49 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344444444444444444444444444444455555555555444
No 177
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=24.80 E-value=2.4e+02 Score=27.36 Aligned_cols=39 Identities=5% Similarity=0.107 Sum_probs=18.3
Q ss_pred hhhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhh
Q 017690 281 MDSQLREAEHTIRKLMEARKLATREKDMLKHELVSFFNY 319 (367)
Q Consensus 281 leskL~ea~~~i~kl~ee~r~~~~erd~l~~e~~~l~~~ 319 (367)
++++......-..||++|.+....+=+++|..-..|++.
T Consensus 149 ~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq 187 (216)
T KOG1962|consen 149 LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQ 187 (216)
T ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444445555555555544454444444443
No 178
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=24.59 E-value=2.2e+02 Score=24.36 Aligned_cols=31 Identities=16% Similarity=0.371 Sum_probs=12.3
Q ss_pred hhHHHHHHHHhhhhhhhhhhhHHHHHHHHHh
Q 017690 269 KDFEELKLKLNVMDSQLREAEHTIRKLMEAR 299 (367)
Q Consensus 269 ~d~~~lk~kL~~leskL~ea~~~i~kl~ee~ 299 (367)
.-++.|+.++..+..+.++.+..+.++.++-
T Consensus 80 ~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~ 110 (118)
T PF13815_consen 80 SQLEQLEERLQELQQEIEKLKQKLKKQKEEI 110 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444443333333333333333
No 179
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=24.50 E-value=2.9e+02 Score=24.48 Aligned_cols=52 Identities=13% Similarity=0.147 Sum_probs=35.8
Q ss_pred hHHHHhHHhhHHHHHHHHhhhhhhhhhhhHHHHHHHHHhhhhhHHHHHHHHH
Q 017690 261 DILELKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHE 312 (367)
Q Consensus 261 ~~~~~~~~~d~~~lk~kL~~leskL~ea~~~i~kl~ee~r~~~~erd~l~~e 312 (367)
..++.-..+-++-|+.-+..+|.-|+-.+..|..|...-+...+|+..+...
T Consensus 33 E~qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~~~ 84 (160)
T PF13094_consen 33 ERQLAANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEEEKK 84 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3333444566777888888888888888888888877777777766655444
No 180
>TIGR02745 ccoG_rdxA_fixG cytochrome c oxidase accessory protein FixG. Member of this ferredoxin-like protein family are found exclusively in species with an operon encoding the cbb3 type of cytochrome c oxidase (cco-cbb3), and near the cco-cbb3 operon in about half the cases. The cco-cbb3 is found in a variety of proteobacteria and almost nowhere else, and is associated with oxygen use under microaerobic conditions. Some (but not all) of these proteobacteria are also nitrogen-fixing, hence the gene symbol fixG. FixG was shown essential for functional cco-cbb3 expression in Bradyrhizobium japonicum.
Probab=24.44 E-value=6.8e+02 Score=26.51 Aligned_cols=51 Identities=14% Similarity=0.177 Sum_probs=36.9
Q ss_pred eEEEEEEEcCCCCeEEEEEecCCCCceeec-C-CceeeCCCCeEEEEEEeccC
Q 017690 23 STCVIQLGNKSDQCVAFKVKTTSPKKYCVR-P-NVSIIKPKAISDFTVTMQAQ 73 (367)
Q Consensus 23 ~s~tLtLtN~S~~~VAFKVKTTaPkrY~VR-P-n~GvI~Pgesv~I~VtLqp~ 73 (367)
-..+++|.|.+.++..|.++........+. + +.=.|+||+..++.|.+...
T Consensus 348 N~Y~~~i~Nk~~~~~~~~l~v~g~~~~~~~~~~~~i~v~~g~~~~~~v~v~~~ 400 (434)
T TIGR02745 348 NTYTLKILNKTEQPHEYYLSVLGLPGIKIEGPGAPIHVKAGEKVKLPVFLRTP 400 (434)
T ss_pred EEEEEEEEECCCCCEEEEEEEecCCCcEEEcCCceEEECCCCEEEEEEEEEec
Confidence 367999999999888888777654333332 2 34489999999888887654
No 181
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=24.41 E-value=2.7e+02 Score=21.73 Aligned_cols=24 Identities=38% Similarity=0.602 Sum_probs=13.5
Q ss_pred HHHHHHHhhhhhhhhhhhHHHHHH
Q 017690 272 EELKLKLNVMDSQLREAEHTIRKL 295 (367)
Q Consensus 272 ~~lk~kL~~leskL~ea~~~i~kl 295 (367)
+.++.||+..|.++++-+..|.+|
T Consensus 2 ~~i~e~l~~ie~~l~~~~~~i~~l 25 (71)
T PF10779_consen 2 QDIKEKLNRIETKLDNHEERIDKL 25 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666655555555
No 182
>PRK14145 heat shock protein GrpE; Provisional
Probab=24.36 E-value=1.6e+02 Score=28.00 Aligned_cols=46 Identities=26% Similarity=0.305 Sum_probs=31.7
Q ss_pred HHhhHHHHHHHHhhhhhhhhhhhHHHHHHHHH----hhhhhHHHHHHHHH
Q 017690 267 LAKDFEELKLKLNVMDSQLREAEHTIRKLMEA----RKLATREKDMLKHE 312 (367)
Q Consensus 267 ~~~d~~~lk~kL~~leskL~ea~~~i~kl~ee----~r~~~~erd~l~~e 312 (367)
...++..|+.+|..++.++.+......++.-| ||++.+||+.++.-
T Consensus 43 ~~~e~~~l~~~l~~le~e~~el~d~~lR~~AEfeN~rkR~~kE~e~~~~~ 92 (196)
T PRK14145 43 TVDEIEELKQKLQQKEVEAQEYLDIAQRLKAEFENYRKRTEKEKSEMVEY 92 (196)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667778888888888887776666666554 67777777766543
No 183
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=24.27 E-value=4.8e+02 Score=22.76 Aligned_cols=46 Identities=17% Similarity=0.205 Sum_probs=17.7
Q ss_pred HHHHHHhhhhhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHh
Q 017690 273 ELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELVSFFN 318 (367)
Q Consensus 273 ~lk~kL~~leskL~ea~~~i~kl~ee~r~~~~erd~l~~e~~~l~~ 318 (367)
+|..++..+++.++..+..+.+|.+.--..-||-..++..+--+++
T Consensus 56 ~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~ 101 (151)
T PF11559_consen 56 DLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQK 101 (151)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444443333333333333333333333
No 184
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=23.83 E-value=2.6e+02 Score=27.65 Aligned_cols=32 Identities=16% Similarity=0.308 Sum_probs=17.6
Q ss_pred HHhhHHHHHHHHhhhhhhhhhhhHHHHHHHHH
Q 017690 267 LAKDFEELKLKLNVMDSQLREAEHTIRKLMEA 298 (367)
Q Consensus 267 ~~~d~~~lk~kL~~leskL~ea~~~i~kl~ee 298 (367)
+..++.++++.|..+++.+++++..+..+...
T Consensus 208 ~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~ 239 (423)
T TIGR01843 208 AQGELGRLEAELEVLKRQIDELQLERQQIEQT 239 (423)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555666666666666655555544433
No 185
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=23.81 E-value=2.8e+02 Score=26.92 Aligned_cols=57 Identities=25% Similarity=0.265 Sum_probs=48.2
Q ss_pred HHhhHHHHHHHHhhhhhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhc
Q 017690 267 LAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELVSFFNYILSC 323 (367)
Q Consensus 267 ~~~d~~~lk~kL~~leskL~ea~~~i~kl~ee~r~~~~erd~l~~e~~~l~~~~~~~ 323 (367)
+..|.+-|+.+|...+.+|+.|+.--.-|+--.-.-.+|=|-|..|=..||..|-+-
T Consensus 156 ~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~~~ 212 (216)
T KOG1962|consen 156 LKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIESG 212 (216)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcc
Confidence 567888888888888889998888888888888888899999999988898887653
No 186
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=23.80 E-value=3.7e+02 Score=26.98 Aligned_cols=38 Identities=32% Similarity=0.426 Sum_probs=16.9
Q ss_pred hhhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHh
Q 017690 281 MDSQLREAEHTIRKLMEARKLATREKDMLKHELVSFFN 318 (367)
Q Consensus 281 leskL~ea~~~i~kl~ee~r~~~~erd~l~~e~~~l~~ 318 (367)
++..|++.+....+|.++...--+++..++.++-.+..
T Consensus 76 l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~ 113 (314)
T PF04111_consen 76 LDQELEELEEELEELDEEEEEYWREYNELQLELIEFQE 113 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444455555555444443
No 187
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=23.74 E-value=2e+02 Score=29.75 Aligned_cols=43 Identities=21% Similarity=0.138 Sum_probs=21.1
Q ss_pred HHHhhhhhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHh
Q 017690 276 LKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELVSFFN 318 (367)
Q Consensus 276 ~kL~~leskL~ea~~~i~kl~ee~r~~~~erd~l~~e~~~l~~ 318 (367)
.++..|+.+++..+.-+.+|.++.....+|-.+|+.|+..|+.
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 64 (398)
T PTZ00454 22 EKLKELEKELEFLDIQEEYIKEEQKNLKRELIRAKEEVKRIQS 64 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3333333344444444444444444444555667777766654
No 188
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=23.37 E-value=3.5e+02 Score=28.13 Aligned_cols=62 Identities=26% Similarity=0.310 Sum_probs=39.2
Q ss_pred HHHHhHHhhHHHHHHHHhhhhhhhhh-------------hhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhc
Q 017690 262 ILELKLAKDFEELKLKLNVMDSQLRE-------------AEHTIRKLMEARKLATREKDMLKHELVSFFNYILSC 323 (367)
Q Consensus 262 ~~~~~~~~d~~~lk~kL~~leskL~e-------------a~~~i~kl~ee~r~~~~erd~l~~e~~~l~~~~~~~ 323 (367)
.....+.+.+++++.+|+.++..|.. ...++.+|++....-.++...|+.++..|+..+...
T Consensus 334 ~~~~~l~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~ 408 (451)
T PF03961_consen 334 EKLEELEEELEELKEELEKLKKNLKKLKKLKKQGKLPPEKKEQLKKLKEKKKELKEELKELKEELKELKEELERS 408 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33455777777777777777764433 234566666666666666666666666666666554
No 189
>PF00521 DNA_topoisoIV: DNA gyrase/topoisomerase IV, subunit A; InterPro: IPR002205 DNA topoisomerases regulate the number of topological links between two DNA strands (i.e. change the number of superhelical turns) by catalysing transient single- or double-strand breaks, crossing the strands through one another, then resealing the breaks []. These enzymes have several functions: to remove DNA supercoils during transcription and DNA replication; for strand breakage during recombination; for chromosome condensation; and to disentangle intertwined DNA during mitosis [, ]. DNA topoisomerases are divided into two classes: type I enzymes (5.99.1.2 from EC; topoisomerases I, III and V) break single-strand DNA, and type II enzymes (5.99.1.3 from EC; topoisomerases II, IV and VI) break double-strand DNA []. Type II topoisomerases are ATP-dependent enzymes, and can be subdivided according to their structure and reaction mechanisms: type IIA (topoisomerase II or gyrase, and topoisomerase IV) and type IIB (topoisomerase VI). These enzymes are responsible for relaxing supercoiled DNA as well as for introducing both negative and positive supercoils []. Type IIA topoisomerases together manage chromosome integrity and topology in cells. Topoisomerase II (called gyrase in bacteria) primarily introduces negative supercoils into DNA. In bacteria, topoisomerase II consists of two polypeptide subunits, gyrA and gyrB, which form a heterotetramer: (BA)2. In most eukaryotes, topoisomerase II consists of a single polypeptide, where the N- and C-terminal regions correspond to gyrB and gyrA, respectively; this topoisomerase II forms a homodimer that is equivalent to the bacterial heterotetramer. There are four functional domains in topoisomerase II: domain 1 (N-terminal of gyrB) is an ATPase, domain 2 (C-terminal of gyrB) is responsible for subunit interactions (differs between eukaryotic and bacterial enzymes), domain 3 (N-terminal of gyrA) is responsible for the breaking-rejoining function through its capacity to form protein-DNA bridges, and domain 4 (C-terminal of gyrA) is able to non-specifically bind DNA []. Topoisomerase IV primarily decatenates DNA and relaxes positive supercoils, which is important in bacteria, where the circular chromosome becomes catenated, or linked, during replication []. Topoisomerase IV consists of two polypeptide subunits, parE and parC, where parC is homologous to gyrA and parE is homologous to gyrB. This entry represents subunit A (gyrA and parC) of bacterial gyrase and topoisomerase IV, and the equivalent C-terminal region in eukaryotic topoisomerase II composed of a single polypeptide. This subunit has DNA-binding capacity. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0003677 DNA binding, 0003918 DNA topoisomerase (ATP-hydrolyzing) activity, 0005524 ATP binding, 0006265 DNA topological change, 0005694 chromosome; PDB: 1ZVU_A 1AB4_A 1X75_A 3NUH_A 1BJT_A 1BGW_A 2RGR_A 3KSB_B 3FOE_B 2NOV_C ....
Probab=23.26 E-value=3.1e+02 Score=28.44 Aligned_cols=63 Identities=21% Similarity=0.305 Sum_probs=41.3
Q ss_pred hhHHHHhHHhhHHHHHHHHhhhh------hhhhhhhHHHH--------------HHHHH----------hhhhhHHHHHH
Q 017690 260 KDILELKLAKDFEELKLKLNVMD------SQLREAEHTIR--------------KLMEA----------RKLATREKDML 309 (367)
Q Consensus 260 ~~~~~~~~~~d~~~lk~kL~~le------skL~ea~~~i~--------------kl~ee----------~r~~~~erd~l 309 (367)
.+.++....-+++.++.+++-++ .++++...+|. +|.++ +|.|-.|.++|
T Consensus 317 ~~~~~kR~~~~l~kl~~~l~il~gl~~~~~~idfIi~vI~~s~~~~~~k~~L~~~L~~~q~~yLL~m~L~~LT~~e~~kL 396 (426)
T PF00521_consen 317 LEYYQKRKQYLLEKLEERLHILEGLIKALNKIDFIIEVIRGSIDKNKAKKDLIEELSEEQADYLLSMPLRRLTKEEIEKL 396 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHSSSHHHHHHHHHHHHCHHHHHHHHTSBGGGGSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhccccchHHHHHHHhhchHHHHHHHHhchHHHhhHHHHHHH
Confidence 34444445567788888888888 66665443332 24444 67777778888
Q ss_pred HHHHHHHHhhhhh
Q 017690 310 KHELVSFFNYILS 322 (367)
Q Consensus 310 ~~e~~~l~~~~~~ 322 (367)
++|...++++|..
T Consensus 397 ~~e~~~l~~ei~~ 409 (426)
T PF00521_consen 397 QKEIKELEKEIEE 409 (426)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8777777777653
No 190
>PF14966 DNA_repr_REX1B: DNA repair REX1-B
Probab=23.16 E-value=2.1e+02 Score=24.12 Aligned_cols=40 Identities=25% Similarity=0.539 Sum_probs=29.4
Q ss_pred HhHHhhHHHHHHHHhhhhhhhh------hhhHHHHHHHHHhhhhhHHHHHHH
Q 017690 265 LKLAKDFEELKLKLNVMDSQLR------EAEHTIRKLMEARKLATREKDMLK 310 (367)
Q Consensus 265 ~~~~~d~~~lk~kL~~leskL~------ea~~~i~kl~ee~r~~~~erd~l~ 310 (367)
..+|.+|..+-.+...+|..|+ +.-..|..|.+ .||++|+
T Consensus 43 ~~iT~~f~~~S~ei~~ie~~L~~~~~~~~la~~i~~lQ~------~Ek~KL~ 88 (97)
T PF14966_consen 43 HEITQEFSAISKEILAIEAELRDEHERPDLAELIRELQE------QEKEKLE 88 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHH------HHHHHHH
Confidence 5589999999999999999997 34556666554 4555553
No 191
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=23.14 E-value=2.1e+02 Score=22.89 Aligned_cols=48 Identities=19% Similarity=0.335 Sum_probs=34.5
Q ss_pred ccccc--cCCchhHHHHhHHhhHHHHHHHHhhhhhhhhhhhHHHHHHHHH
Q 017690 251 EDASE--LKPAKDILELKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEA 298 (367)
Q Consensus 251 ~~~~~--l~~~~~~~~~~~~~d~~~lk~kL~~leskL~ea~~~i~kl~ee 298 (367)
..+++ +..-.+.+...|.++.++++..++.|+.+++..+..+.++...
T Consensus 49 ~~vG~~fv~~~~~~~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~ 98 (106)
T PF01920_consen 49 KSVGKMFVKQDKEEAIEELEERIEKLEKEIKKLEKQLKYLEKKLKELKKK 98 (106)
T ss_dssp EEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555 3445556667788888888888888888888877777776654
No 192
>smart00338 BRLZ basic region leucin zipper.
Probab=23.10 E-value=2.4e+02 Score=21.32 Aligned_cols=36 Identities=19% Similarity=0.303 Sum_probs=17.6
Q ss_pred HHhhhhhhhhhhhHHHHHHHHHhhhhhHHHHHHHHH
Q 017690 277 KLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHE 312 (367)
Q Consensus 277 kL~~leskL~ea~~~i~kl~ee~r~~~~erd~l~~e 312 (367)
.+..||.+...-+.....|+.+-....+|.+.|+++
T Consensus 27 ~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~ 62 (65)
T smart00338 27 EIEELERKVEQLEAENERLKKEIERLRRELEKLKSE 62 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455554444444555555544444444444444
No 193
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=23.01 E-value=1.9e+02 Score=29.86 Aligned_cols=47 Identities=19% Similarity=0.164 Sum_probs=27.9
Q ss_pred HHhhhhhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhc
Q 017690 277 KLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELVSFFNYILSC 323 (367)
Q Consensus 277 kL~~leskL~ea~~~i~kl~ee~r~~~~erd~l~~e~~~l~~~~~~~ 323 (367)
+...++.++++.+..+..|..+.+.-..+.+.+++|+..++.++.+-
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 62 (398)
T PTZ00454 16 TERDLYEKLKELEKELEFLDIQEEYIKEEQKNLKRELIRAKEEVKRI 62 (398)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455566666666666666666666666666666666666665543
No 194
>PF11598 COMP: Cartilage oligomeric matrix protein; InterPro: IPR024665 Thrombospondins are adhesive glycoproteins that mediate cell-to-cell and cell-to-matrix interactions. Cartilage oligomeric matrix protein may play a role in the structural integrity of cartilage via its interaction with other extracellular matrix proteins such as collagen and fibronectin [, ]. Thrombospondin 3 and 4 and cartilage oligomeric matrix proteins contain a five-stranded coiled-coil domain represented by this entry. This domain has a binding site between two internal rings formed by Leu37 and Thr40 [].; PDB: 1MZ9_D 1FBM_A 1VDF_E.
Probab=22.92 E-value=2.4e+02 Score=21.01 Aligned_cols=35 Identities=26% Similarity=0.359 Sum_probs=23.8
Q ss_pred hhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhcc
Q 017690 283 SQLREAEHTIRKLMEARKLATREKDMLKHELVSFFNYILSCH 324 (367)
Q Consensus 283 skL~ea~~~i~kl~ee~r~~~~erd~l~~e~~~l~~~~~~~~ 324 (367)
..|.+--.++..|+|+=|--+ +|+.+||+-|..|+
T Consensus 8 ~ql~~l~~~l~elk~~l~~Q~-------kE~~~LRntI~eC~ 42 (45)
T PF11598_consen 8 KQLSELNQMLQELKELLRQQI-------KETRFLRNTIMECQ 42 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHT-T
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhc
Confidence 455555666677776665543 58999999998876
No 195
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=22.81 E-value=4e+02 Score=21.28 Aligned_cols=52 Identities=25% Similarity=0.193 Sum_probs=24.0
Q ss_pred chhHHHHhHHhhHHHHHHHHhhhhhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 017690 259 AKDILELKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELVSFF 317 (367)
Q Consensus 259 ~~~~~~~~~~~d~~~lk~kL~~leskL~ea~~~i~kl~ee~r~~~~erd~l~~e~~~l~ 317 (367)
.+|.+...|.+--++|-. +--.-..+|.|||-.......+.+.|+..+..+-
T Consensus 9 EKDe~Ia~L~eEGekLSk-------~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e 60 (74)
T PF12329_consen 9 EKDEQIAQLMEEGEKLSK-------KELKLNNTIKKLRAKIKELEKQIKELKKKLEELE 60 (74)
T ss_pred hHHHHHHHHHHHHHHHHH-------HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555545544444322 2222234566666555555555555444444333
No 196
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=22.77 E-value=4e+02 Score=25.42 Aligned_cols=61 Identities=13% Similarity=0.188 Sum_probs=44.5
Q ss_pred chhHHHHhHHhhHHHHHHHHhhhhhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhh
Q 017690 259 AKDILELKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELVSFFNYI 320 (367)
Q Consensus 259 ~~~~~~~~~~~d~~~lk~kL~~leskL~ea~~~i~kl~ee~r~~~~erd~l~~e~~~l~~~~ 320 (367)
.++.+ ..|++=|=||..|+.+||-++++--....---|.+++.-++=.+|+|-+..|-.|.
T Consensus 70 Sr~Di-arvA~lvinlE~kvD~lee~fdd~~d~l~~q~eq~~~~~~~v~~~~q~~~~l~~K~ 130 (189)
T TIGR02132 70 TKEDI-ANVASLVINLEEKVDLIEEFFDDKFDELEAQQEQAPALKKDVTKLKQDIKSLDKKL 130 (189)
T ss_pred CHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchHHhHHHHHHHHHHHHHHHH
Confidence 34443 44888888999999999998888443334444677888888888888888877764
No 197
>PF05753 TRAP_beta: Translocon-associated protein beta (TRAPB); InterPro: IPR008856 This family consists of several eukaryotic translocon-associated protein beta (TRAPB) or signal sequence receptor beta subunit (SSR-beta) proteins. The normal translocation of nascent polypeptides into the lumen of the endoplasmic reticulum (ER) is thought to be aided in part by a translocon-associated protein (TRAP) complex consisting of 4 protein subunits. The association of mature proteins with the ER and Golgi, or other intracellular locales, such as lysosomes, depends on the initial targeting of the nascent polypeptide to the ER membrane. A similar scenario must also exist for proteins destined for secretion [].; GO: 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=22.68 E-value=3.6e+02 Score=25.05 Aligned_cols=54 Identities=17% Similarity=0.234 Sum_probs=39.1
Q ss_pred cCCeeEEEEEEEcCCCCeEEEEEecCC----CCceeec-----CCceeeCCCCeEEEEEEeccC
Q 017690 19 VKKQSTCVIQLGNKSDQCVAFKVKTTS----PKKYCVR-----PNVSIIKPKAISDFTVTMQAQ 73 (367)
Q Consensus 19 ~~k~~s~tLtLtN~S~~~VAFKVKTTa----PkrY~VR-----Pn~GvI~Pgesv~I~VtLqp~ 73 (367)
.++...-.++|+|..+. -||.|+=++ ++.|-+- =..+.|.||+.+.-.+++.|.
T Consensus 36 ~g~~v~V~~~iyN~G~~-~A~dV~l~D~~fp~~~F~lvsG~~s~~~~~i~pg~~vsh~~vv~p~ 98 (181)
T PF05753_consen 36 EGEDVTVTYTIYNVGSS-AAYDVKLTDDSFPPEDFELVSGSLSASWERIPPGENVSHSYVVRPK 98 (181)
T ss_pred CCcEEEEEEEEEECCCC-eEEEEEEECCCCCccccEeccCceEEEEEEECCCCeEEEEEEEeee
Confidence 35777899999999655 799998887 2444432 123678888888888887764
No 198
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=22.46 E-value=3.7e+02 Score=28.60 Aligned_cols=56 Identities=16% Similarity=0.264 Sum_probs=33.2
Q ss_pred HhHHhhHHHHHHHH-------hhhhhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhh
Q 017690 265 LKLAKDFEELKLKL-------NVMDSQLREAEHTIRKLMEARKLATREKDMLKHELVSFFNYI 320 (367)
Q Consensus 265 ~~~~~d~~~lk~kL-------~~leskL~ea~~~i~kl~ee~r~~~~erd~l~~e~~~l~~~~ 320 (367)
....+|++.+..++ ..|+..|.+.+..|..++.+.+.+-.+.+++.+.+..+...+
T Consensus 41 ~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l 103 (420)
T COG4942 41 KQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARL 103 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHH
Confidence 44445555555444 445556666666666666666666666666666666554443
No 199
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=22.29 E-value=2.2e+02 Score=23.44 Aligned_cols=29 Identities=24% Similarity=0.223 Sum_probs=11.9
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHhhh
Q 017690 292 IRKLMEARKLATREKDMLKHELVSFFNYI 320 (367)
Q Consensus 292 i~kl~ee~r~~~~erd~l~~e~~~l~~~~ 320 (367)
|..|-+++|...++-|.|++|.-.+.+.|
T Consensus 31 i~~ld~~~r~l~~~~e~lr~~rN~~sk~I 59 (108)
T PF02403_consen 31 IIELDQERRELQQELEELRAERNELSKEI 59 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 33344444444444444444444333333
No 200
>PRK14160 heat shock protein GrpE; Provisional
Probab=22.12 E-value=2.7e+02 Score=26.78 Aligned_cols=52 Identities=15% Similarity=0.259 Sum_probs=31.4
Q ss_pred hhHHHHhHHhhHHHHHHHHhhhhhhhhhhhHHHHHHHHH----hhhhhHHHHHHHH
Q 017690 260 KDILELKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEA----RKLATREKDMLKH 311 (367)
Q Consensus 260 ~~~~~~~~~~d~~~lk~kL~~leskL~ea~~~i~kl~ee----~r~~~~erd~l~~ 311 (367)
...-...+.+.++.|+.++..++.++++......++.-+ ||++.+|++.+..
T Consensus 52 ~~~~~~~l~~e~~~l~~~l~~l~~e~~elkd~~lR~~AefeN~RKR~~kE~e~~~~ 107 (211)
T PRK14160 52 NEVKIEELKDENNKLKEENKKLENELEALKDRLLRTVAEYDNYRKRTAKEKEGIYS 107 (211)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334455667777777777777777766655555544 5666666665543
No 201
>PF07246 Phlebovirus_NSM: Phlebovirus nonstructural protein NS-M; InterPro: IPR009879 This entry consists of several Phlebovirus nonstructural NS-M proteins, which represent the N-terminal region of the M polyprotein precursor. The function of this family is unknown.
Probab=22.10 E-value=2.3e+02 Score=28.37 Aligned_cols=38 Identities=21% Similarity=0.145 Sum_probs=29.6
Q ss_pred hhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhh
Q 017690 285 LREAEHTIRKLMEARKLATREKDMLKHELVSFFNYILS 322 (367)
Q Consensus 285 L~ea~~~i~kl~ee~r~~~~erd~l~~e~~~l~~~~~~ 322 (367)
.+|.+..+..||++.+.-+.|...-|.+|..+|+++..
T Consensus 204 ~~e~~~r~~~lr~~~~~l~~el~~aK~~~~~~~~~~~~ 241 (264)
T PF07246_consen 204 HEELEARESGLRNESKWLEHELSDAKEDMIRLRNDISD 241 (264)
T ss_pred HHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 34455557778999888888888888899999998764
No 202
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=21.72 E-value=2e+02 Score=32.43 Aligned_cols=34 Identities=32% Similarity=0.540 Sum_probs=24.1
Q ss_pred HHHhHHhhHHHHHHHHhhhhh-------hhhhhhHHHHHHH
Q 017690 263 LELKLAKDFEELKLKLNVMDS-------QLREAEHTIRKLM 296 (367)
Q Consensus 263 ~~~~~~~d~~~lk~kL~~les-------kL~ea~~~i~kl~ 296 (367)
|...|+..|.|||.||-.||- |+|-+|..|..++
T Consensus 175 qKlDLmaevSeLKLkltalEkeq~e~E~K~R~se~l~qevn 215 (861)
T KOG1899|consen 175 QKLDLMAEVSELKLKLTALEKEQNETEKKLRLSENLMQEVN 215 (861)
T ss_pred HHhHHHHHHHHhHHHHHHHHHHhhhHHHHHHhHHHHHHHHH
Confidence 456688999999999999986 4444554444443
No 203
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=21.64 E-value=3.5e+02 Score=26.89 Aligned_cols=54 Identities=15% Similarity=0.129 Sum_probs=37.4
Q ss_pred HHHHHHHHhhhhhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhcc
Q 017690 271 FEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELVSFFNYILSCH 324 (367)
Q Consensus 271 ~~~lk~kL~~leskL~ea~~~i~kl~ee~r~~~~erd~l~~e~~~l~~~~~~~~ 324 (367)
=++|--.|..+|++++|-..-|..|+-|...--.++++|--|..-|+++...--
T Consensus 151 keeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe 204 (290)
T COG4026 151 KEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELE 204 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhc
Confidence 344455566677777777777777777777777777788778888877765443
No 204
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=21.34 E-value=3.8e+02 Score=27.77 Aligned_cols=55 Identities=16% Similarity=0.199 Sum_probs=30.5
Q ss_pred HhhHHHHHHHHhhhhhhhhhh------------hHHHHHHHHHhh-hhhHHHHHHHHHHHHHHhhhhh
Q 017690 268 AKDFEELKLKLNVMDSQLREA------------EHTIRKLMEARK-LATREKDMLKHELVSFFNYILS 322 (367)
Q Consensus 268 ~~d~~~lk~kL~~leskL~ea------------~~~i~kl~ee~r-~~~~erd~l~~e~~~l~~~~~~ 322 (367)
..++.+|++.+..+++++.++ +.-+..|.++.+ ...++.+.+++++..++..+..
T Consensus 242 ~~~i~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~l~~~~~~l~~ 309 (457)
T TIGR01000 242 QQQIDQLQKSIASYQVQKAGLTKSTASNYASSQNSKLAQLKEQQLAKVKQEITDLNQKLLELESKIKS 309 (457)
T ss_pred HHHHHHHHHHHHHHHHHHhhccCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555544443 444555555544 4556677777777777765543
No 205
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=21.16 E-value=2.7e+02 Score=30.34 Aligned_cols=49 Identities=14% Similarity=0.116 Sum_probs=36.1
Q ss_pred HHhhHHHHHHHHhhhhhhhhhhhHHHHHHHHHhhhhhH-HHHHHHHHHHH
Q 017690 267 LAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATR-EKDMLKHELVS 315 (367)
Q Consensus 267 ~~~d~~~lk~kL~~leskL~ea~~~i~kl~ee~r~~~~-erd~l~~e~~~ 315 (367)
..+.+++++.++++++..+++.+..|.++.++...-.. -++.|..|...
T Consensus 213 p~~~l~~l~~~l~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~ 262 (646)
T PRK05771 213 PSELIREIKEELEEIEKERESLLEELKELAKKYLEELLALYEYLEIELER 262 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778888888888888888888888888877666555 56666655444
No 206
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=21.06 E-value=3.7e+02 Score=30.38 Aligned_cols=31 Identities=23% Similarity=0.276 Sum_probs=14.9
Q ss_pred HHHHHHHhhhhhhhhhhhHHHHHHHHHhhhh
Q 017690 272 EELKLKLNVMDSQLREAEHTIRKLMEARKLA 302 (367)
Q Consensus 272 ~~lk~kL~~leskL~ea~~~i~kl~ee~r~~ 302 (367)
.++..+...++..++|++....+|.++...-
T Consensus 525 ~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l 555 (771)
T TIGR01069 525 KELEQKNEHLEKLLKEQEKLKKELEQEMEEL 555 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444455555555555555444333
No 207
>smart00637 CBD_II CBD_II domain.
Probab=21.01 E-value=3.5e+02 Score=21.52 Aligned_cols=48 Identities=17% Similarity=0.180 Sum_probs=30.2
Q ss_pred eEEEEEEEcCCCCe-----EEEEEec-------------CCCCceeecCCc--eeeCCCCeEEEEEEe
Q 017690 23 STCVIQLGNKSDQC-----VAFKVKT-------------TSPKKYCVRPNV--SIIKPKAISDFTVTM 70 (367)
Q Consensus 23 ~s~tLtLtN~S~~~-----VAFKVKT-------------TaPkrY~VRPn~--GvI~Pgesv~I~VtL 70 (367)
....|+|+|.++.+ |.|.+-. .....|.++|.. +.|.||+++.|-+..
T Consensus 8 ~~~~v~vtN~~~~~~~~W~v~~~~~~~~~i~~~Wn~~~~~~g~~~~~~~~~wn~~i~~G~s~~~gf~~ 75 (92)
T smart00637 8 FTANVTVTNTGSSAINGWTVTFDLPGGQTVTNSWNATVSQSGGHVTATNASWNGTIAPGGSVSFGFQG 75 (92)
T ss_pred EEEEEEEEeCCCCcccCeEEEEEcCCCcEEeeeEEEEEEecCCEEEEecCccccccCCCCEEEEEEEe
Confidence 34678888876543 3444311 123368888644 899999988876655
No 208
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=20.78 E-value=3.7e+02 Score=29.00 Aligned_cols=61 Identities=13% Similarity=0.242 Sum_probs=44.0
Q ss_pred HhHHhhHHHHHHHHhhhhhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhccc
Q 017690 265 LKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELVSFFNYILSCHY 325 (367)
Q Consensus 265 ~~~~~d~~~lk~kL~~leskL~ea~~~i~kl~ee~r~~~~erd~l~~e~~~l~~~~~~~~~ 325 (367)
+.+.+.++.+..+|+.++....+-..+|..|+.+-..+...=+.++..|..++|++.+++-
T Consensus 379 sel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~ikr~l~k~~l 439 (569)
T PRK04778 379 SELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHEIKRYLEKSNL 439 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 4455667777777777777777777777777777766666667777777778877777643
No 209
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=20.64 E-value=4.6e+02 Score=26.43 Aligned_cols=14 Identities=21% Similarity=0.209 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHh
Q 017690 305 EKDMLKHELVSFFN 318 (367)
Q Consensus 305 erd~l~~e~~~l~~ 318 (367)
++..++.|+..+++
T Consensus 247 ~k~e~~~~I~~ae~ 260 (312)
T smart00787 247 KKSELNTEIAEAEK 260 (312)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444444
No 210
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=20.64 E-value=4.7e+02 Score=24.31 Aligned_cols=57 Identities=16% Similarity=0.204 Sum_probs=0.0
Q ss_pred hHHhhHHHHHHHHhhhhhhhhhhhHHHHHHHHHhhh-hhHHHHHHHHHHHHHHhhhhh
Q 017690 266 KLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKL-ATREKDMLKHELVSFFNYILS 322 (367)
Q Consensus 266 ~~~~d~~~lk~kL~~leskL~ea~~~i~kl~ee~r~-~~~erd~l~~e~~~l~~~~~~ 322 (367)
.+...+..|+.+.+.|+.++.+.+..+..+....-. -..+..+.+.|+.+|++.+..
T Consensus 124 ~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~~~k~~~~ei~~lk~~~~q 181 (189)
T PF10211_consen 124 ELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQEEEKKHQEEIDFLKKQNQQ 181 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 211
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=20.58 E-value=1.8e+02 Score=21.42 Aligned_cols=41 Identities=20% Similarity=0.340 Sum_probs=27.9
Q ss_pred HHhhHHHHHHHHhhhhhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhh
Q 017690 267 LAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELVSFFNYIL 321 (367)
Q Consensus 267 ~~~d~~~lk~kL~~leskL~ea~~~i~kl~ee~r~~~~erd~l~~e~~~l~~~~~ 321 (367)
+-.|+.-||+.-+. |+.+...=-+|++.|+.|++.|+.+..
T Consensus 3 lE~Dy~~LK~~yd~--------------Lk~~~~~L~~E~~~L~aev~~L~~kl~ 43 (45)
T PF02183_consen 3 LERDYDALKASYDS--------------LKAEYDSLKKENEKLRAEVQELKEKLQ 43 (45)
T ss_pred hHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34566666665544 455555666788999999999887753
No 212
>PRK14139 heat shock protein GrpE; Provisional
Probab=20.47 E-value=2.4e+02 Score=26.52 Aligned_cols=43 Identities=12% Similarity=0.118 Sum_probs=25.3
Q ss_pred hHHHHHHHHhhhhhhhhhhhHHHHHHHHH----hhhhhHHHHHHHHH
Q 017690 270 DFEELKLKLNVMDSQLREAEHTIRKLMEA----RKLATREKDMLKHE 312 (367)
Q Consensus 270 d~~~lk~kL~~leskL~ea~~~i~kl~ee----~r~~~~erd~l~~e 312 (367)
+...|+.+|..++.+++|.+....++.-| ||++.+||+.++.-
T Consensus 33 e~~~l~~~l~~le~e~~elkd~~lR~~AefeN~rKR~~kE~e~~~~~ 79 (185)
T PRK14139 33 AAPALEAELAEAEAKAAELQDSFLRAKAETENVRRRAQEDVAKAHKF 79 (185)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666655555555443 66777777666554
No 213
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=20.47 E-value=3.2e+02 Score=30.89 Aligned_cols=55 Identities=15% Similarity=0.251 Sum_probs=38.9
Q ss_pred HHhhHHHHHHHHhhhhhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhh
Q 017690 267 LAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELVSFFNYIL 321 (367)
Q Consensus 267 ~~~d~~~lk~kL~~leskL~ea~~~i~kl~ee~r~~~~erd~l~~e~~~l~~~~~ 321 (367)
+.+-+.-|+.+++-.+.+|++...-+..++.|----.+-+-.|+.|+..|++|..
T Consensus 564 ~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~kle 618 (698)
T KOG0978|consen 564 AKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKRKLE 618 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666777777777777777776666666666656666677888888888754
No 214
>PRK14161 heat shock protein GrpE; Provisional
Probab=20.46 E-value=3.7e+02 Score=25.04 Aligned_cols=45 Identities=13% Similarity=0.233 Sum_probs=30.3
Q ss_pred HHhhHHHHHHHHhhhhhhhhhhhHHHHHHHHH----hhhhhHHHHHHHH
Q 017690 267 LAKDFEELKLKLNVMDSQLREAEHTIRKLMEA----RKLATREKDMLKH 311 (367)
Q Consensus 267 ~~~d~~~lk~kL~~leskL~ea~~~i~kl~ee----~r~~~~erd~l~~ 311 (367)
+-+|++-+..++..++.++++.+....++.-| ||++.+|++..+.
T Consensus 17 ~~~~~~~~~~ei~~l~~e~~elkd~~lR~~AefeN~rkR~~ke~~~~~~ 65 (178)
T PRK14161 17 AEEIVETANPEITALKAEIEELKDKLIRTTAEIDNTRKRLEKARDEAKD 65 (178)
T ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55788888888888888888776666666554 4555565555443
No 215
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=20.42 E-value=1.8e+02 Score=23.88 Aligned_cols=53 Identities=23% Similarity=0.268 Sum_probs=32.6
Q ss_pred HhhHHHHHHHHhhhhhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhcc
Q 017690 268 AKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELVSFFNYILSCH 324 (367)
Q Consensus 268 ~~d~~~lk~kL~~leskL~ea~~~i~kl~ee~r~~~~erd~l~~e~~~l~~~~~~~~ 324 (367)
.+..-.+..+++.+-.+-.+..+.|-+++-.. .+++.|+.|+..++.+|..-.
T Consensus 35 d~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~----~~~~~l~~e~~~lk~~i~~le 87 (108)
T PF02403_consen 35 DQERRELQQELEELRAERNELSKEIGKLKKAG----EDAEELKAEVKELKEEIKELE 87 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTT----CCTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCc----ccHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555565555433 467778888888888776543
No 216
>PF08702 Fib_alpha: Fibrinogen alpha/beta chain family; InterPro: IPR012290 Fibrinogen plays key roles in both blood clotting and platelet aggregation. During blood clot formation, the conversion of soluble fibrinogen to insoluble fibrin is triggered by thrombin, resulting in the polymerisation of fibrin, which forms a soft clot; this is then converted to a hard clot by factor XIIIA, which cross-links fibrin molecules. Platelet aggregation involves the binding of the platelet protein receptor integrin alpha(IIb)-beta(3) to the C-terminal D domain of fibrinogen []. In addition to platelet aggregation, platelet-fibrinogen interaction mediates both adhesion and fibrin clot retraction. Fibrinogen occurs as a dimer, where each monomer is composed of three non-identical chains, alpha, beta and gamma, linked together by several disulphide bonds []. The N-terminals of all six chains come together to form the centre of the molecule (E domain), from which the monomers extend in opposite directions as coiled coils, followed by C-terminal globular domains (D domains). Therefore, the domain composition is: D-coil-E-coil-D. At each end, the C-terminal of the alpha chain extends beyond the D domain as a protuberance that is important for cross-linking the molecule. During clot formation, the N-terminal fragments of the alpha and beta chains (within the E domain) in fibrinogen are cleaved by thrombin, releasing fibrinopeptides A and B, respectively, and producing fibrin. This cleavage results in the exposure of four binding sites on the E domain, each of which can bind to a D domain from different fibrin molecules. The binding of fibrin molecules produces a polymer consisting of a lattice network of fibrins that form a long, branching, flexible fibre [, ]. Fibrin fibres interact with platelets to increase the size of the clot, as well as with several different proteins and cells, thereby promoting the inflammatory response and concentrating the cells required for wound repair at the site of damage. This entry represents the coiled-coil domain and part of the N-terminal E domain found in all three fibrinogen polypeptides, namely the alpha, beta and gamma chains. More information about these proteins can be found at Protein of the Month: Fibrinogen [].; GO: 0005102 receptor binding, 0030674 protein binding, bridging, 0007165 signal transduction, 0030168 platelet activation, 0051258 protein polymerization, 0005577 fibrinogen complex; PDB: 1LWU_D 1N73_D 1M1J_B 1JY2_R 1JY3_R 1RF0_A 2H43_D 1RE4_D 2XNY_D 2HPC_D ....
Probab=20.30 E-value=2.4e+02 Score=25.34 Aligned_cols=41 Identities=22% Similarity=0.312 Sum_probs=35.0
Q ss_pred hHHHHhHHhhHHHHHHHHhhhhhhhhhhhHHHHHHHHHhhh
Q 017690 261 DILELKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKL 301 (367)
Q Consensus 261 ~~~~~~~~~d~~~lk~kL~~leskL~ea~~~i~kl~ee~r~ 301 (367)
+-++..|.+|+++|+..|..++.+=.+|...|.-+++--|-
T Consensus 28 ~k~~~~v~~~i~~L~~~L~~~~n~t~~~~~~v~~i~~~~~~ 68 (146)
T PF08702_consen 28 DKYERDVDKDIQELENLLDQISNSTSEAFEYVKNIKDSLRP 68 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc
Confidence 45677799999999999999999999999998888776443
No 217
>PRK14151 heat shock protein GrpE; Provisional
Probab=20.26 E-value=2.1e+02 Score=26.54 Aligned_cols=42 Identities=14% Similarity=0.238 Sum_probs=23.8
Q ss_pred hHHHHHHHHhhhhhhhhhhhHHHHHHHHH----hhhhhHHHHHHHH
Q 017690 270 DFEELKLKLNVMDSQLREAEHTIRKLMEA----RKLATREKDMLKH 311 (367)
Q Consensus 270 d~~~lk~kL~~leskL~ea~~~i~kl~ee----~r~~~~erd~l~~ 311 (367)
...+|+.++..++.+++|.+....++.-| ||++.+|++..++
T Consensus 21 ~~~~l~~~i~~le~e~~el~d~~lR~~Ae~eN~rkR~~kE~e~~~~ 66 (176)
T PRK14151 21 AGDDLTARVQELEEQLAAAKDQSLRAAADLQNVRRRAEQDVEKAHK 66 (176)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666666666655555555433 5666666665554
No 218
>PRK06663 flagellar hook-associated protein FlgL; Validated
Probab=20.08 E-value=2.8e+02 Score=28.67 Aligned_cols=57 Identities=12% Similarity=0.243 Sum_probs=46.3
Q ss_pred HhHHhhHHHHHHHHhhhhhhhhhhhHHHHHHHHH------hhhhhHHHHHHHHHHHHHHhhhh
Q 017690 265 LKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEA------RKLATREKDMLKHELVSFFNYIL 321 (367)
Q Consensus 265 ~~~~~d~~~lk~kL~~leskL~ea~~~i~kl~ee------~r~~~~erd~l~~e~~~l~~~~~ 321 (367)
....+-+...++.|+..|+-|......+.++||- .-.+..+|..+++|+..|+..+.
T Consensus 61 ~qy~~ni~~a~s~L~~~dsaL~~i~~~l~~~rel~v~a~n~t~s~~dr~aia~e~~~l~~~l~ 123 (419)
T PRK06663 61 DRYQKNIDDGKDRLRYAEGYLQSITNILQRARELAVQGANGTYQADDKKKIAKEIDELLEDLV 123 (419)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 3456778889999999999999999999999982 12345679999999998887664
No 219
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=20.02 E-value=5.4e+02 Score=23.64 Aligned_cols=84 Identities=12% Similarity=0.047 Sum_probs=44.6
Q ss_pred HHhhHHHHHHHHhhhhhhhhhhhHHHHHHHHHhhhhhHH-HHHHHHHHHHHHhh--------hhhccchhhhhhhhhhhc
Q 017690 267 LAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATRE-KDMLKHELVSFFNY--------ILSCHYDCLLWTHFLKVK 337 (367)
Q Consensus 267 ~~~d~~~lk~kL~~leskL~ea~~~i~kl~ee~r~~~~e-rd~l~~e~~~l~~~--------~~~~~~~~~~~~~~~~~~ 337 (367)
+..|+.+-......++.-..+.+..+.+-|.|.+.--+| ||+|..|...=|+. +.+---|-.+-.. +.|
T Consensus 46 I~~~L~~Ae~~k~eAe~l~a~ye~~L~~Ar~eA~~I~~e~~~~~~a~~~~~~~~~ea~L~~~~~~~~~~~~~~~~--~~~ 123 (155)
T PRK06569 46 IQDNITQADTLTIEVEKLNKYYNEEIDKTNTEIDRLKKEKIDSLESEFLIKKKNLEQDLKNSINQNIEDINLAAK--QFR 123 (155)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHH
Confidence 555555555555555555555566666666665555555 66666665443332 2221222222222 445
Q ss_pred cchhhHHHHhhhhhh
Q 017690 338 KSCRWLLLSLHCHLA 352 (367)
Q Consensus 338 ~~~~~~~~~~~~~~~ 352 (367)
.+-.=-+..|-||.+
T Consensus 124 ~~~~~~~i~~~~~i~ 138 (155)
T PRK06569 124 TNKSEAIIKLAVNII 138 (155)
T ss_pred HhHHHHHHHHHHHHH
Confidence 555556777788877
Done!