Query 017690
Match_columns 367
No_of_seqs 153 out of 651
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 03:24:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017690.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017690hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cri_A Vesicle-associated memb 100.0 2.4E-31 8.3E-36 231.9 18.6 124 4-131 13-137 (147)
2 1z9l_A Vesicle-associated memb 100.0 3.6E-31 1.2E-35 225.1 17.0 118 4-125 9-127 (128)
3 1wic_A Hypothetical protein ri 100.0 1.8E-31 6.3E-36 234.7 13.6 130 3-137 16-148 (152)
4 1msp_A MSP, major sperm protei 100.0 4.5E-29 1.5E-33 213.0 15.4 119 3-125 6-125 (126)
5 1row_A SSP-19, MSP-domain prot 99.9 3E-25 1E-29 186.2 14.0 104 6-123 3-106 (109)
6 1m1s_A WR4; structural genomic 99.9 1.6E-24 5.5E-29 184.2 15.1 106 4-123 9-114 (116)
7 2ys4_A Hydrocephalus-inducing 98.1 1.4E-05 4.6E-10 66.4 9.9 75 10-90 29-104 (122)
8 3qbt_B Inositol polyphosphate 97.8 0.00013 4.6E-09 62.7 10.5 70 3-72 24-100 (140)
9 2e6j_A Hydin protein; PAPD, st 97.8 8.9E-05 3E-09 59.6 8.2 70 4-73 8-81 (112)
10 3qis_A Inositol polyphosphate 97.2 0.0013 4.4E-08 64.5 10.3 72 3-74 27-105 (366)
11 2qsv_A Uncharacterized protein 95.6 0.042 1.4E-06 49.7 8.8 69 5-74 2-71 (220)
12 2qsv_A Uncharacterized protein 94.4 0.15 5.2E-06 46.0 8.7 69 4-74 118-187 (220)
13 3efg_A Protein SLYX homolog; x 90.4 0.6 2E-05 36.8 6.2 57 268-324 6-62 (78)
14 3q48_A Chaperone CUPB2; IG fol 86.8 2.7 9.2E-05 39.4 9.1 109 6-128 30-148 (257)
15 2co7_B SAFB chaperone, putativ 86.4 4.3 0.00015 37.0 10.1 84 6-95 14-102 (221)
16 2xg5_A PAPD, chaperone protein 85.6 5.5 0.00019 36.3 10.3 109 6-128 2-119 (218)
17 3hnw_A Uncharacterized protein 83.8 3.8 0.00013 35.3 7.9 56 265-320 64-119 (138)
18 1klf_A FIMC chaperone, chapero 82.3 7.3 0.00025 35.1 9.6 111 6-128 2-119 (205)
19 1yew_A Particulate methane mon 81.8 6.8 0.00023 39.2 9.8 70 3-74 247-338 (382)
20 4djm_A DRAB; chaperone, PILI; 80.4 8.4 0.00029 35.7 9.5 84 6-95 24-112 (239)
21 1l4i_A SFAE protein; periplasm 78.7 11 0.00039 33.8 9.5 111 6-128 2-119 (206)
22 3hnw_A Uncharacterized protein 78.3 9 0.00031 32.9 8.4 56 267-322 73-128 (138)
23 2eqb_B RAB guanine nucleotide 74.0 8 0.00027 31.9 6.5 51 268-318 4-61 (97)
24 1nlw_A MAD protein, MAX dimeri 72.4 6 0.00021 31.0 5.2 38 284-321 41-78 (80)
25 4ay0_A Chaperone protein CAF1M 71.9 30 0.001 31.5 10.6 108 6-127 14-128 (218)
26 1ic2_A Tropomyosin alpha chain 70.9 12 0.00041 29.0 6.6 17 305-321 35-51 (81)
27 3gfu_C Chaperone protein FAEE; 70.6 24 0.00083 32.4 9.7 106 6-127 2-114 (224)
28 1wt6_A Myotonin-protein kinase 69.3 11 0.00038 30.1 6.1 46 269-321 31-76 (81)
29 1lwu_C Fibrinogen gamma chain; 69.0 12 0.00041 36.5 7.6 56 267-322 3-58 (323)
30 3rfr_A PMOB; membrane, oxidore 68.5 21 0.00073 36.0 9.4 67 5-74 283-370 (419)
31 2r39_A FIXG-related protein; s 68.0 20 0.00068 29.1 7.7 50 24-73 34-84 (118)
32 4etp_A Kinesin-like protein KA 67.9 9.6 0.00033 37.8 6.8 56 265-320 6-61 (403)
33 3u59_A Tropomyosin beta chain; 66.1 24 0.00081 28.4 7.7 56 266-321 41-96 (101)
34 3i00_A HIP-I, huntingtin-inter 62.9 29 0.00098 29.3 7.8 59 258-319 11-83 (120)
35 3vkg_A Dynein heavy chain, cyt 62.5 14 0.00048 45.9 8.0 55 267-321 2019-2073(3245)
36 3u1c_A Tropomyosin alpha-1 cha 61.8 32 0.0011 27.8 7.7 56 266-321 41-96 (101)
37 3l4q_C Phosphatidylinositol 3- 58.4 18 0.00062 32.4 6.1 69 259-331 86-154 (170)
38 3na7_A HP0958; flagellar bioge 58.3 9.4 0.00032 35.2 4.4 59 267-325 51-111 (256)
39 1s1c_X RHO-associated, coiled- 57.7 28 0.00097 27.1 6.3 48 266-313 3-52 (71)
40 1c1g_A Tropomyosin; contractIl 56.9 47 0.0016 28.2 8.4 52 269-320 27-78 (284)
41 3hhm_B NISH2 P85alpha; PI3KCA, 56.6 27 0.00091 34.5 7.6 60 259-318 195-254 (373)
42 1nkp_A C-MYC, MYC proto-oncoge 55.5 20 0.00067 28.4 5.3 39 284-322 46-84 (88)
43 1x8y_A Lamin A/C; structural p 54.5 17 0.00058 28.7 4.7 57 270-329 4-62 (86)
44 3ljm_A Coil Ser L9C; de novo d 53.9 10 0.00035 24.7 2.7 24 267-290 6-29 (31)
45 1nkp_B MAX protein, MYC proto- 53.8 23 0.0008 27.2 5.4 39 285-323 42-80 (83)
46 3na7_A HP0958; flagellar bioge 53.6 45 0.0015 30.6 8.2 59 264-322 20-78 (256)
47 3u1c_A Tropomyosin alpha-1 cha 53.1 44 0.0015 26.9 7.1 49 274-322 7-55 (101)
48 2oqq_A Transcription factor HY 52.5 21 0.00071 25.3 4.3 36 277-312 4-39 (42)
49 1vcs_A Vesicle transport throu 52.0 18 0.00063 29.2 4.7 39 273-311 35-74 (102)
50 4emc_A Monopolin complex subun 52.0 13 0.00046 33.9 4.2 44 281-324 11-54 (190)
51 2e7s_A RAB guanine nucleotide 51.8 32 0.0011 29.8 6.4 50 269-318 25-81 (135)
52 2fxo_A Myosin heavy chain, car 51.0 47 0.0016 27.7 7.3 49 267-315 74-122 (129)
53 1l8d_A DNA double-strand break 50.3 20 0.00069 28.6 4.7 44 275-318 2-45 (112)
54 3u59_A Tropomyosin beta chain; 48.4 58 0.002 26.0 7.1 49 274-322 7-55 (101)
55 1uix_A RHO-associated kinase; 48.3 55 0.0019 25.4 6.6 35 267-301 2-36 (71)
56 2qyw_A Vesicle transport throu 48.3 46 0.0016 26.8 6.6 49 272-320 45-94 (102)
57 2fxo_A Myosin heavy chain, car 47.8 46 0.0016 27.7 6.7 50 269-318 13-62 (129)
58 1a92_A Delta antigen; leucine 46.3 18 0.00063 26.4 3.4 27 273-299 11-37 (50)
59 3htk_A Structural maintenance 46.1 72 0.0025 22.7 6.7 44 267-310 10-53 (60)
60 2jee_A YIIU; FTSZ, septum, coi 45.9 47 0.0016 26.4 6.0 17 278-294 8-24 (81)
61 3onj_A T-snare VTI1; helix, HA 44.0 59 0.002 25.9 6.5 48 272-319 30-80 (97)
62 3m9b_A Proteasome-associated A 41.5 28 0.00096 33.0 4.8 40 279-318 57-96 (251)
63 3oja_B Anopheles plasmodium-re 41.2 66 0.0023 32.0 7.8 15 307-321 561-575 (597)
64 1gd2_E Transcription factor PA 39.4 42 0.0014 25.8 4.7 20 277-296 30-49 (70)
65 2wt7_B Transcription factor MA 37.8 37 0.0013 27.4 4.3 38 279-316 51-88 (90)
66 3oja_B Anopheles plasmodium-re 37.6 92 0.0031 31.0 8.2 32 290-321 551-582 (597)
67 1ic2_A Tropomyosin alpha chain 36.6 1.4E+02 0.0048 22.8 7.8 35 267-301 11-45 (81)
68 1go4_E MAD1 (mitotic arrest de 36.2 1.8E+02 0.0061 23.9 8.6 56 267-322 24-93 (100)
69 3u06_A Protein claret segregat 35.9 61 0.0021 32.2 6.5 54 267-320 8-61 (412)
70 1gk4_A Vimentin; intermediate 34.9 1.2E+02 0.004 23.6 6.7 57 270-329 2-60 (84)
71 3n7n_E Monopolin complex subun 33.3 9 0.00031 31.5 0.0 34 263-296 51-95 (95)
72 4h22_A Leucine-rich repeat fli 33.1 2.1E+02 0.0071 23.7 8.5 57 267-323 28-84 (103)
73 1wt6_A Myotonin-protein kinase 32.8 69 0.0024 25.5 5.0 36 265-300 34-69 (81)
74 2dfs_A Myosin-5A; myosin-V, in 32.7 1E+02 0.0035 34.4 8.2 58 266-323 988-1049(1080)
75 2ocy_A RAB guanine nucleotide 31.8 1.6E+02 0.0053 25.9 7.7 45 274-318 42-93 (154)
76 3tnu_A Keratin, type I cytoske 31.3 1.8E+02 0.0063 24.0 7.9 56 265-323 48-103 (131)
77 3ra3_A P1C; coiled coil domain 30.4 37 0.0013 21.7 2.5 20 304-323 7-26 (28)
78 4etp_A Kinesin-like protein KA 30.4 81 0.0028 31.1 6.3 48 269-320 3-50 (403)
79 3cl3_D NF-kappa-B essential mo 30.3 10 0.00034 32.8 -0.2 44 276-319 9-52 (130)
80 3tnu_B Keratin, type II cytosk 30.1 2E+02 0.0068 23.7 7.9 55 266-323 47-101 (129)
81 2dfs_A Myosin-5A; myosin-V, in 29.6 1.2E+02 0.004 33.9 8.1 34 284-317 985-1018(1080)
82 2d4x_A Flagellar HOOK-associat 29.2 1.7E+02 0.0057 26.2 7.8 59 264-322 21-85 (248)
83 3ol1_A Vimentin; structural ge 29.2 2.4E+02 0.0081 23.2 8.3 54 265-318 44-104 (119)
84 4ani_A Protein GRPE; chaperone 28.7 80 0.0027 29.0 5.5 43 268-310 58-104 (213)
85 1m1j_C Fibrinogen gamma chain; 28.5 1.3E+02 0.0044 30.1 7.4 56 267-322 82-137 (409)
86 1jcd_A Major outer membrane li 28.1 1E+02 0.0036 22.4 5.0 37 263-299 5-41 (52)
87 2ve7_A Kinetochore protein HEC 28.0 94 0.0032 29.6 6.2 48 269-319 185-232 (315)
88 2lem_A Apolipoprotein A-I; lip 27.9 98 0.0034 27.7 6.0 43 281-323 52-99 (216)
89 1io1_A Phase 1 flagellin; beta 27.4 1.6E+02 0.0056 28.9 7.9 58 265-322 9-72 (398)
90 3s4r_A Vimentin; alpha-helix, 27.2 1E+02 0.0035 24.5 5.3 36 284-319 57-92 (93)
91 3idu_A Uncharacterized protein 27.1 1.4E+02 0.0048 24.9 6.4 68 20-96 32-100 (127)
92 3v47_C Flagellin; innate immun 26.8 96 0.0033 31.3 6.2 59 264-322 20-84 (425)
93 3swk_A Vimentin; cytoskeleton, 26.5 2.3E+02 0.0079 22.1 7.4 55 264-318 23-84 (86)
94 3cve_A Homer protein homolog 1 26.1 2.3E+02 0.0078 21.9 7.0 56 267-322 5-67 (72)
95 2v4h_A NF-kappa-B essential mo 25.7 2.9E+02 0.0098 23.1 7.9 24 298-321 84-107 (110)
96 3cvf_A Homer-3, homer protein 25.5 2.4E+02 0.0082 22.2 7.0 56 267-322 11-73 (79)
97 3hn9_A Lamin-B1; structural ge 24.9 85 0.0029 26.1 4.6 41 25-66 25-71 (123)
98 1ykh_B RNA polymerase II holoe 24.0 1.6E+02 0.0055 24.8 6.2 55 268-322 70-124 (132)
99 1m1j_B Fibrinogen beta chain; 23.6 2.2E+02 0.0076 29.0 8.2 30 262-291 93-122 (464)
100 3pwx_A Putative flagellar HOOK 23.1 1.9E+02 0.0065 26.2 7.0 58 265-322 24-87 (239)
101 2p22_C Protein SRN2; endosome, 23.1 2E+02 0.0069 25.8 7.0 51 255-305 45-98 (192)
102 3fga_D Shugoshin-like 1; PP2A, 22.5 82 0.0028 22.7 3.4 26 274-299 15-40 (47)
103 2v4h_A NF-kappa-B essential mo 22.3 1.7E+02 0.0059 24.5 5.9 29 270-298 25-53 (110)
104 1yke_B RNA polymerase II holoe 22.3 1.6E+02 0.0054 25.5 6.0 54 268-321 70-123 (151)
105 3e38_A Two-domain protein cont 22.1 2.3E+02 0.0079 27.2 7.7 64 25-95 270-333 (343)
106 2xzz_A Protein-glutamine gamma 22.0 2.1E+02 0.0072 22.9 6.3 56 19-75 18-76 (102)
107 3t97_C Nuclear pore glycoprote 21.8 1.4E+02 0.0046 22.6 4.7 37 281-317 3-39 (64)
108 2zvf_A Alanyl-tRNA synthetase; 21.5 2.1E+02 0.0071 24.0 6.5 32 286-317 28-59 (171)
109 3a7p_A Autophagy protein 16; c 21.5 2.9E+02 0.0098 24.3 7.4 33 267-299 73-105 (152)
110 3azd_A Short alpha-tropomyosin 21.4 42 0.0014 22.7 1.6 27 271-297 6-32 (37)
111 2xv5_A Lamin-A/C; structural p 21.4 2.8E+02 0.0096 21.3 7.4 52 267-318 3-54 (74)
112 4dzn_A Coiled-coil peptide CC- 21.2 67 0.0023 21.2 2.5 21 305-325 3-23 (33)
113 3k8w_A Flagellin homolog; flag 21.1 2.7E+02 0.0092 27.2 7.9 59 264-322 41-105 (326)
114 3bas_A Myosin heavy chain, str 20.6 2.1E+02 0.0071 22.4 5.8 43 270-312 15-57 (89)
115 3ghg_B Fibrinogen beta chain; 20.4 2.2E+02 0.0074 29.2 7.3 37 261-297 87-123 (461)
116 2v71_A Nuclear distribution pr 20.1 2.8E+02 0.0095 25.0 7.3 42 267-311 68-109 (189)
117 3i00_A HIP-I, huntingtin-inter 20.0 1.8E+02 0.0061 24.4 5.6 39 269-307 40-78 (120)
No 1
>2cri_A Vesicle-associated membrane protein-associated protein A; VAP-A, VAP-33, beta sandwitch fold, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.98 E-value=2.4e-31 Score=231.92 Aligned_cols=124 Identities=35% Similarity=0.583 Sum_probs=113.3
Q ss_pred CceEEeCC-eeEEeeecCCeeEEEEEEEcCCCCeEEEEEecCCCCceeecCCceeeCCCCeEEEEEEeccCccCCCCCCC
Q 017690 4 ELLDIQPL-ELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKPKAISDFTVTMQAQRVAPPDLQC 82 (367)
Q Consensus 4 ~LL~IdP~-EL~F~~p~~k~~s~tLtLtN~S~~~VAFKVKTTaPkrY~VRPn~GvI~Pgesv~I~VtLqp~~~~Ppd~k~ 82 (367)
.+|.|+|. +|.|.+++++..++.|+|+|+++++||||||||+|++|+|||+.|+|.||+++.|.|+|+++...| ++++
T Consensus 13 ~~L~i~P~~~L~F~~p~~~~~~~~l~L~N~s~~~VaFKVKTT~p~~y~VrP~~GiI~P~~s~~v~V~l~~~~~~p-~~~~ 91 (147)
T 2cri_A 13 QILVLDPPSDLKFKGPFTDVVTTNLKLQNPSDRKVCFKVKTTAPRRYCVRPNSGIIDPGSIVTVSVMLQPFDYDP-NEKS 91 (147)
T ss_dssp CCSEEESSSEEEEECCSSSCCCEEEEEECCSSSCEEEEEEESCTTSEEEESSEEECCTTCEEEEEEEECCCCCCT-TCCS
T ss_pred CeEEECCCCeEEEeCCCCceEEEEEEEECCCCCcEEEEEECCCCccEEEcCCCcEECCCCeEEEEEEECCCcCCc-cccC
Confidence 58999997 899999999999999999999999999999999999999999999999999999999999987654 5689
Q ss_pred CCeEEEEEEEeCCCCCcchhhhHhhcccCCCceeEEEeEEEEeCCCCCC
Q 017690 83 KDKFLIQGIVVPFGTSDEDITSDMFAKDSGKYVEEKKLRVILMSPPQSP 131 (367)
Q Consensus 83 kDKFLVQS~~Vp~g~td~Di~~e~Wkk~~k~~I~e~KLrV~fv~~~~s~ 131 (367)
+|||+||++.++++.+ |+ .++|++..+..++++||||+|+.+.++.
T Consensus 92 kDKFlVqs~~~~~~~~--d~-~~~wk~~~~~~i~e~kLrv~f~~p~~~~ 137 (147)
T 2cri_A 92 KHKFMVQTIFAPPNIS--DM-EAVWKEAKPDELMDSKLRCVFEMPNEND 137 (147)
T ss_dssp CCCEEEEEEECCTTCC--CH-HHHHHHSCTTTCEEEEEEEEEECSCCSS
T ss_pred CCEEEEEEEEcCCCcc--cH-HHHhhcCCCCceEEEEEEEEEecCCCCc
Confidence 9999999999987643 34 6899999889999999999999887663
No 2
>1z9l_A Vesicle-associated membrane protein-associated protein A; VAP-A, cytoplasmic domain, protein binding; HET: MSE; 1.70A {Rattus norvegicus} PDB: 1z9o_A 2rr3_A 3ikk_A
Probab=99.97 E-value=3.6e-31 Score=225.06 Aligned_cols=118 Identities=35% Similarity=0.590 Sum_probs=108.6
Q ss_pred CceEEeCC-eeEEeeecCCeeEEEEEEEcCCCCeEEEEEecCCCCceeecCCceeeCCCCeEEEEEEeccCccCCCCCCC
Q 017690 4 ELLDIQPL-ELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKPKAISDFTVTMQAQRVAPPDLQC 82 (367)
Q Consensus 4 ~LL~IdP~-EL~F~~p~~k~~s~tLtLtN~S~~~VAFKVKTTaPkrY~VRPn~GvI~Pgesv~I~VtLqp~~~~Ppd~k~ 82 (367)
.+|.|+|. +|.|.+++++..++.|+|+|+++++||||||||+|++|+|||+.|+|.||+++.|.|+++++...| +.++
T Consensus 9 ~~L~i~P~~~l~F~~p~~~~~~~~l~L~N~s~~~vaFKVKTT~p~~y~VrP~~G~i~P~~s~~v~V~~~~~~~~p-~~~~ 87 (128)
T 1z9l_A 9 QILVLDPPSDLKFKGPFTDVVTTNLKLQNPSDRKVCFKVKTTAPRRYCVRPNSGVIDPGSIVTVSVMLQPFDYDP-NEKS 87 (128)
T ss_dssp CCSEEESSSEEEEESCCSSCEEEEEEEECCSSSCEEEEEEESCGGGEEEESCEEEECTTCEEEEEEEECCCCCCT-TCCC
T ss_pred CeEEECCCCeEEEcCCCCceEEEEEEEECCCCCeEEEEEECCCCCceEEeCCCcEECCCCeEEEEEEECcCcCCc-cccc
Confidence 58999997 899999999999999999999999999999999999999999999999999999999999986654 5689
Q ss_pred CCeEEEEEEEeCCCCCcchhhhHhhcccCCCceeEEEeEEEEe
Q 017690 83 KDKFLIQGIVVPFGTSDEDITSDMFAKDSGKYVEEKKLRVILM 125 (367)
Q Consensus 83 kDKFLVQS~~Vp~g~td~Di~~e~Wkk~~k~~I~e~KLrV~fv 125 (367)
+|||+||++.++++.+ |+ .++|++.++..++++||||+|.
T Consensus 88 ~dkF~V~s~~~~~~~~--~~-~~~w~~~~~~~i~e~kLrv~f~ 127 (128)
T 1z9l_A 88 KHKFMVQTIFAPPNIS--DM-EAVWKEAKPDELMDSKLRCVFE 127 (128)
T ss_dssp CCEEEEEEEECCTTCS--CH-HHHHHSCCGGGCEEEEEEEEEE
T ss_pred CCEEEEEEEECCCCcc--hH-HHHhhcCCCCceEEEEEEEEEe
Confidence 9999999999998653 44 6899999889999999999994
No 3
>1wic_A Hypothetical protein riken cDNA 6030424E15; beta sandwich fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.1.11.2
Probab=99.97 E-value=1.8e-31 Score=234.68 Aligned_cols=130 Identities=30% Similarity=0.420 Sum_probs=116.7
Q ss_pred CCceEEeCC-eeEEeeecCCeeEEEEEEEcCCCCeEEEEEecCCCCceeecCCceeeCCCCeEEEEEEeccCccCCCCCC
Q 017690 3 EELLDIQPL-ELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKPKAISDFTVTMQAQRVAPPDLQ 81 (367)
Q Consensus 3 s~LL~IdP~-EL~F~~p~~k~~s~tLtLtN~S~~~VAFKVKTTaPkrY~VRPn~GvI~Pgesv~I~VtLqp~~~~Ppd~k 81 (367)
..+|.|+|. +|.|.++++++.+|.|+|+|+++++||||||||+|++|+|||+.|+|.||+++.|.|+||++.. ..
T Consensus 16 ~~~L~i~P~~~L~F~~~~~~~~~~~l~L~N~s~~~VaFKVKTT~p~~y~VrP~~GiI~P~~s~~V~V~lq~~~~----~~ 91 (152)
T 1wic_A 16 GPLLHISPAEELYFGSIESGEKKTLIVLTNVTKNIVAFKVRTTAPEKYRVKPSNSSCDPGASIDIIVSPHGGLT----VS 91 (152)
T ss_dssp CSSBCBBSSSCBCCCCSSSSCCCEEEEEEBCSSSCEEEEEEESCTTTEEEESSEEEECTTCEEEEEEEECSSSC----CC
T ss_pred CCeEEECCCCeEEEeCCCCceEEEEEEEEcCCCCeEEEEEECCCCCceeecCCCcEECCCCeEEEEEEecCccc----CC
Confidence 468999998 8999999999999999999999999999999999999999999999999999999999999853 26
Q ss_pred CCCeEEEEEEEeC--CCCCcchhhhHhhcccCCCceeEEEeEEEEeCCCCCCCcCCCC
Q 017690 82 CKDKFLIQGIVVP--FGTSDEDITSDMFAKDSGKYVEEKKLRVILMSPPQSPVLLPRN 137 (367)
Q Consensus 82 ~kDKFLVQS~~Vp--~g~td~Di~~e~Wkk~~k~~I~e~KLrV~fv~~~~s~~~~~~n 137 (367)
++|||+||++.++ ++.+.+|+ .++|++..+..++++||+|+|+.+.+++++...+
T Consensus 92 ~kDKFlVqs~~v~~~~~~~~~d~-~~~wk~~~~~~i~e~kLrv~f~~~~~p~s~~~~g 148 (152)
T 1wic_A 92 AQDRFLIMAAEMEQSSGTGPAEL-SQFWKEVPRNKVMEHRLRCHTVESSKPNSLMLSG 148 (152)
T ss_dssp SSCCEEEEEEECCSSCCCSHHHH-HHHHHHSCTTTCEEEEECBCCCCSCSSSSSCCCC
T ss_pred CCCEEEEEEEEcCCcCCCChhhH-HHHHhccCCCceEEEEEEEEECCCCCCCCccccC
Confidence 8999999999998 55555666 4899999889999999999999998887665443
No 4
>1msp_A MSP, major sperm protein; cytoskeletal protein, cell motility protein; 2.50A {Ascaris suum} SCOP: b.1.11.2 PDB: 3msp_A 2bvu_A 2msp_A 1grw_A
Probab=99.96 E-value=4.5e-29 Score=213.03 Aligned_cols=119 Identities=21% Similarity=0.332 Sum_probs=106.0
Q ss_pred CCceEEeCC-eeEEeeecCCeeEEEEEEEcCCCCeEEEEEecCCCCceeecCCceeeCCCCeEEEEEEeccCccCCCCCC
Q 017690 3 EELLDIQPL-ELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKPKAISDFTVTMQAQRVAPPDLQ 81 (367)
Q Consensus 3 s~LL~IdP~-EL~F~~p~~k~~s~tLtLtN~S~~~VAFKVKTTaPkrY~VRPn~GvI~Pgesv~I~VtLqp~~~~Ppd~k 81 (367)
...|.++|. +|.|++++++..+|+|+|+|+|+++||||||||+|++|+|||++|+|.||+++.|.|+||++...|++.
T Consensus 6 ~~~l~i~P~~~l~F~~p~~~~~~~~l~l~N~s~~~vaFKVKTT~p~~y~VrP~~Gii~P~~s~~v~V~~q~~~~~~~~~- 84 (126)
T 1msp_A 6 PGDINTQPSQKIVFNAPYDDKHTYHIKITNAGGRRIGWAIKTTNMRRLSVDPPCGVLDPKEKVLMAVSCDTFNAATEDL- 84 (126)
T ss_dssp CCCEEEESSSCEEEESCCSSCCCEEEEEEECSSSCEEEEEEESCTTTEEEESCEEEECTTCEEEEEEEECCCCGGGSCC-
T ss_pred CCeEEEcCCCeEEEcCcCCcceEEEEEEECCCCCeEEEEEEcCCCCcEEEECCCeEECCCCEEEEEEEecCCCCCCCcc-
Confidence 367999997 899999999999999999999999999999999999999999999999999999999999998776553
Q ss_pred CCCeEEEEEEEeCCCCCcchhhhHhhcccCCCceeEEEeEEEEe
Q 017690 82 CKDKFLIQGIVVPFGTSDEDITSDMFAKDSGKYVEEKKLRVILM 125 (367)
Q Consensus 82 ~kDKFLVQS~~Vp~g~td~Di~~e~Wkk~~k~~I~e~KLrV~fv 125 (367)
.+|||+||++.+++|. ++|+..+||.. ...+..++|+|.|-
T Consensus 85 ~kDKf~Vq~~~~p~~~-~~~~~~~wf~~--d~~~~~k~L~V~Yn 125 (126)
T 1msp_A 85 NNDRITIEWTNTPDGA-AKQFRREWFQG--DGMVRRKNLPIEYN 125 (126)
T ss_dssp SSCEEEEEEEECCTTC-CSSCCTHHHHS--SSCCEEEEEEEEEE
T ss_pred CCCEEEEEEEECCCCc-chhhhHHhhcC--CCceEEEEEEEEec
Confidence 5999999999999875 36787666644 35688999999984
No 5
>1row_A SSP-19, MSP-domain protein like family member; beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Caenorhabditis elegans} SCOP: b.1.11.2
Probab=99.93 E-value=3e-25 Score=186.19 Aligned_cols=104 Identities=17% Similarity=0.271 Sum_probs=89.4
Q ss_pred eEEeCCeeEEeeecCCeeEEEEEEEcCCCCeEEEEEecCCCCceeecCCceeeCCCCeEEEEEEeccCccCCCCCCCCCe
Q 017690 6 LDIQPLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKPKAISDFTVTMQAQRVAPPDLQCKDK 85 (367)
Q Consensus 6 L~IdP~EL~F~~p~~k~~s~tLtLtN~S~~~VAFKVKTTaPkrY~VRPn~GvI~Pgesv~I~VtLqp~~~~Ppd~k~kDK 85 (367)
|.|+|.+|.|.++. .+++|+|+|+++++||||||||+|++|||||++|+|+||++++|.|++|++ + .++||
T Consensus 3 L~i~P~~l~F~~~~---~~~~l~L~N~t~~~vaFKVKtT~p~~y~VrP~~G~I~P~~~~~i~I~~q~~---~---~~~dK 73 (109)
T 1row_A 3 LTADPPACTVPAAG---VSSTHKLVNGGAEKIVFKIKSSNNNEYRIAPVFGFVDPSGSKDVVITRTAG---A---PKEDK 73 (109)
T ss_dssp CEEESSSEEEETTC---EEEEEEEEECSSSCEEEEEEESCSSSEEEECSEEEECTTEEEEEEEEECSC---C---CEEEE
T ss_pred EEEECCEeEEeCCC---CeEEEEEEcCCCCeEEEEEEeCCCCceEEcCCceEECCCCeEEEEEEeCCC---C---CCCCE
Confidence 89999999999863 379999999999999999999999999999999999999999999999985 2 36999
Q ss_pred EEEEEEEeCCCCCcchhhhHhhcccCCCceeEEEeEEE
Q 017690 86 FLIQGIVVPFGTSDEDITSDMFAKDSGKYVEEKKLRVI 123 (367)
Q Consensus 86 FLVQS~~Vp~g~td~Di~~e~Wkk~~k~~I~e~KLrV~ 123 (367)
|+||++.++++. .|. +++|++..+ ..+.+|++.
T Consensus 74 flvq~~~~~~~~--~d~-~~~fk~~~~--~g~~~i~l~ 106 (109)
T 1row_A 74 LVVHFASAPADA--TDA-QAAFVAVAP--AGTVTIPMS 106 (109)
T ss_dssp EEEEEEECCTTC--SCH-HHHHTTCCC--CEEEEEEEE
T ss_pred EEEEEEECCCCC--CCH-HHHhhcCCC--CceEEEEEE
Confidence 999999998764 333 689998644 345666654
No 6
>1m1s_A WR4; structural genomics, major sperm protein, bioinformatics, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: b.1.11.2
Probab=99.92 E-value=1.6e-24 Score=184.23 Aligned_cols=106 Identities=24% Similarity=0.367 Sum_probs=91.9
Q ss_pred CceEEeCCeeEEeeecCCeeEEEEEEEcCCCCeEEEEEecCCCCceeecCCceeeCCCCeEEEEEEeccCccCCCCCCCC
Q 017690 4 ELLDIQPLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKPKAISDFTVTMQAQRVAPPDLQCK 83 (367)
Q Consensus 4 ~LL~IdP~EL~F~~p~~k~~s~tLtLtN~S~~~VAFKVKTTaPkrY~VRPn~GvI~Pgesv~I~VtLqp~~~~Ppd~k~k 83 (367)
.++.++|.+|.|.+. +.++.|+|+|+++.+||||||||+|++|||||++|+|+||++++|.|++|++ + .++
T Consensus 9 ~~~~~~p~~l~F~~~---gg~~~l~L~N~t~~~vAFKVKtT~p~~YrVrP~~G~I~Pg~~~~I~I~~q~~---~---~k~ 79 (116)
T 1m1s_A 9 SMINVDPPTGNYPAT---GGNSTHNITSESDSRLAFKVKSSNNEHYRVRPVYGFVDAKGKSKLDINRLPG---P---PKE 79 (116)
T ss_dssp CSEEEESSEEEECTT---CEEEEEEEEECSSSEEEEEEEESCTTTEEEECSEEEECTTCEEEEEEEECSC---C---SCE
T ss_pred eeeecCCCeEEEecC---CCEEEEEEECCCCCeEEEEEEecCCCceEEcCCceEECCCCeEEEEEEeCCC---C---CCC
Confidence 578999999999975 3489999999999999999999999999999999999999999999999987 2 369
Q ss_pred CeEEEEEEEeCCCCCcchhhhHhhcccCCCceeEEEeEEE
Q 017690 84 DKFLIQGIVVPFGTSDEDITSDMFAKDSGKYVEEKKLRVI 123 (367)
Q Consensus 84 DKFLVQS~~Vp~g~td~Di~~e~Wkk~~k~~I~e~KLrV~ 123 (367)
|||+||++.++++.. |. +++|++..+ ..+.+|++.
T Consensus 80 DKflVq~~~~~~d~~--d~-~~~fk~~~~--~g~~~i~l~ 114 (116)
T 1m1s_A 80 DKIVIQYAEVPAEET--DP-MAPFKAGAQ--QGEIIVKLI 114 (116)
T ss_dssp EEEEEEEEEECTTCC--CT-THHHHTTCC--CEEEEEEEE
T ss_pred CEEEEEEEECCCCCC--CH-HHHHhcCCC--CceEEEEEE
Confidence 999999999987543 33 689998654 567777764
No 7
>2ys4_A Hydrocephalus-inducing protein homolog; hydin, PAPD-like, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.13 E-value=1.4e-05 Score=66.41 Aligned_cols=75 Identities=17% Similarity=0.368 Sum_probs=60.8
Q ss_pred CCeeEEee-ecCCeeEEEEEEEcCCCCeEEEEEecCCCCceeecCCceeeCCCCeEEEEEEeccCccCCCCCCCCCeEEE
Q 017690 10 PLELKFTF-EVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKPKAISDFTVTMQAQRVAPPDLQCKDKFLI 88 (367)
Q Consensus 10 P~EL~F~~-p~~k~~s~tLtLtN~S~~~VAFKVKTTaPkrY~VRPn~GvI~Pgesv~I~VtLqp~~~~Ppd~k~kDKFLV 88 (367)
|+.|.|.. +.+......+.|+|.++.++.|++++. .-|.|.|+.|.|.||+++.|.|++.|.... .....+.|
T Consensus 29 p~~l~fg~~~v~~~~~~~~~l~N~g~~~~~f~~~~~--~~F~i~P~~g~L~pg~~~~i~V~F~P~~~g----~~~~~l~v 102 (122)
T 2ys4_A 29 PDKLNFSTCPVKYSTQKILLVRNIGNKNAVFHIKTC--RPFSIEPAIGTLNVGESMQLEVEFEPQSVG----DHSGRLIV 102 (122)
T ss_dssp CSEECCCSEESSSCEEEEEEEECCSSSCEEEEEECC--TTEEEESSEEEECTTCEEEEEEEECCSSSB----CCCCBCEE
T ss_pred CCeeecCCeecCCeEEEEEEEEECCCCCEEEEEecC--CCeEEECCcCEECCCCEEEEEEEEEcCCCc----cEEEEEEE
Confidence 66788865 556777899999999999999999984 479999999999999999999999987532 23445555
Q ss_pred EE
Q 017690 89 QG 90 (367)
Q Consensus 89 QS 90 (367)
..
T Consensus 103 ~~ 104 (122)
T 2ys4_A 103 CY 104 (122)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 8
>3qbt_B Inositol polyphosphate 5-phosphatase OCRL-1; protein transport, vesicular trafficking, GTPase, LOWE syndr immunoglobulin fold, RAB8A, endocytosis; HET: GNP; 2.00A {Homo sapiens}
Probab=97.80 E-value=0.00013 Score=62.66 Aligned_cols=70 Identities=13% Similarity=0.178 Sum_probs=59.8
Q ss_pred CCceEEeCCeeEEee-ecCCeeEEEEEEEcCCCCeEEEEEecC------CCCceeecCCceeeCCCCeEEEEEEecc
Q 017690 3 EELLDIQPLELKFTF-EVKKQSTCVIQLGNKSDQCVAFKVKTT------SPKKYCVRPNVSIIKPKAISDFTVTMQA 72 (367)
Q Consensus 3 s~LL~IdP~EL~F~~-p~~k~~s~tLtLtN~S~~~VAFKVKTT------aPkrY~VRPn~GvI~Pgesv~I~VtLqp 72 (367)
.+-+.+++.+|.|-. .++...+++|+|+|++.-+..|++... .+.-+.|.|..|.|.||+++.|.|++.-
T Consensus 24 ~P~i~v~~~~ldFG~v~~~~~~~~~l~I~Ntg~vpa~F~f~~~~~~~~~~~~wl~v~P~~G~L~Pge~~~I~v~~~v 100 (140)
T 3qbt_B 24 LPSLELSRREFVFENVKFRQLQKEKFQISNNGQVPCHFSFIPKLNDSQYCKPWLRAEPFEGYLEPNETVDISLDVYV 100 (140)
T ss_dssp SCCEEESCCEEEEEEECBTCCEEEEEEEEECSSSCEEEEEECCTTCSSSSCTTEEEESCEEEECTTCEEEEEEEECB
T ss_pred CCceEeeeeeEEeeeceeeeeeeeEEEEEcCCccceEEEEecCCCchhhhhHhhhcCCcccccCCCCeeEEEEEEEE
Confidence 367888889999975 567788999999999999999998753 3456889999999999999999999873
No 9
>2e6j_A Hydin protein; PAPD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.76 E-value=8.9e-05 Score=59.59 Aligned_cols=70 Identities=13% Similarity=0.155 Sum_probs=59.1
Q ss_pred CceEEeCCeeEEee-ecCCeeEEEEEEEcCCCCeEEEEEecCCC---CceeecCCceeeCCCCeEEEEEEeccC
Q 017690 4 ELLDIQPLELKFTF-EVKKQSTCVIQLGNKSDQCVAFKVKTTSP---KKYCVRPNVSIIKPKAISDFTVTMQAQ 73 (367)
Q Consensus 4 ~LL~IdP~EL~F~~-p~~k~~s~tLtLtN~S~~~VAFKVKTTaP---krY~VRPn~GvI~Pgesv~I~VtLqp~ 73 (367)
+.+.+++..|.|-. ..+...++.++|+|.++.++.|++..... ..|.+.|+.|.|.||++..|.|++.+.
T Consensus 8 P~i~~~~~~ldFG~v~~g~~~~~~~~l~N~g~~p~~~~~~~~~~~~~~~f~v~p~~g~i~pg~~~~i~V~f~~~ 81 (112)
T 2e6j_A 8 PKIHFNFELLDIGKVFTGSAHCYEAILYNKGSIDALFNMTPPTSALGACFVFSPKEGIIEPSGVQAIQISFSSI 81 (112)
T ss_dssp CSEEESCSEEEEEEEESSCCEEEEEEEEECCSSCEEEEECCCSSHHHHHCEEESSEEEECTTBCCEEEEEECCC
T ss_pred CEEEECcccEecEeEEECCEEEEEEEEEECCcceEEEEEecCCccccCcEEEECCcCEECCCCEEEEEEEEECC
Confidence 56788888888865 45667788999999999999999954221 469999999999999999999999975
No 10
>3qis_A Inositol polyphosphate 5-phosphatase OCRL-1; DENT disease, RAC1, RAB gtpases, APPL1, endocytic PATH golgi complex, hydrolase-protein binding complex; 2.30A {Homo sapiens} PDB: 2qv2_A
Probab=97.24 E-value=0.0013 Score=64.48 Aligned_cols=72 Identities=13% Similarity=0.203 Sum_probs=59.9
Q ss_pred CCceEEeCCeeEEee-ecCCeeEEEEEEEcCCCCeEEEEEecCCCC-c-----eeecCCceeeCCCCeEEEEEEeccCc
Q 017690 3 EELLDIQPLELKFTF-EVKKQSTCVIQLGNKSDQCVAFKVKTTSPK-K-----YCVRPNVSIIKPKAISDFTVTMQAQR 74 (367)
Q Consensus 3 s~LL~IdP~EL~F~~-p~~k~~s~tLtLtN~S~~~VAFKVKTTaPk-r-----Y~VRPn~GvI~Pgesv~I~VtLqp~~ 74 (367)
-+-+.|++.++.|.. .+....+++|+|+|++.-++.|++.....+ . +.|.|..|+|.||+++.|.|++....
T Consensus 27 ~P~v~v~~~~idFg~v~~~~~~~~~l~i~N~g~~pa~f~f~~~~~~~~~~~~wl~v~p~~g~l~Pge~~~i~l~~~v~~ 105 (366)
T 3qis_A 27 LPSLELSRREFVFENVKFRQLQKEKFQISNNGQVPCHFSFIPKLNDSQYCKPWLRAEPFEGYLEPNETVDISLDVYVSK 105 (366)
T ss_dssp -CCEEESCSEEEEEEECBTCCEEEEEEEEECSSSCEEEEEECCTTCSSSSCTTEEEESCEEEECTTCEEEEEEEECBCT
T ss_pred CCeEEEecCeEEeeeeeeCCeEEEEEEEEecCCceEEEEEEeCCCCCCCCCCcEEEeCCccEECCCCEEEEEEEEEECH
Confidence 367889999999965 677888999999999999999999764222 2 66999999999999999999986543
No 11
>2qsv_A Uncharacterized protein; MCSG, structural genomics, porphyromonas gingivalis W83, PSI protein structure initiative; 2.10A {Porphyromonas gingivalis}
Probab=95.61 E-value=0.042 Score=49.67 Aligned_cols=69 Identities=10% Similarity=0.208 Sum_probs=58.5
Q ss_pred ceEEeCCeeEEee-ecCCeeEEEEEEEcCCCCeEEEEEecCCCCceeecCCceeeCCCCeEEEEEEeccCc
Q 017690 5 LLDIQPLELKFTF-EVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKPKAISDFTVTMQAQR 74 (367)
Q Consensus 5 LL~IdP~EL~F~~-p~~k~~s~tLtLtN~S~~~VAFKVKTTaPkrY~VRPn~GvI~Pgesv~I~VtLqp~~ 74 (367)
-|+++|..+.|.. ..+......++++|.++.++-++.-.. |..+.+++..+.|.||++..|.|++.+..
T Consensus 2 ~i~~~~~~idFg~v~~g~~~~~~~~i~N~g~~pl~i~~~~~-p~~~~~~~~~~~I~PG~~g~I~vt~~~~~ 71 (220)
T 2qsv_A 2 PLQVSNARLLFPISMPEDEGVVRLVVNNTDESDLQVAVVSL-PSFVSLDDRAFRLQAREPRELNLSLAVPR 71 (220)
T ss_dssp CEEESCSEEECCSBCTTCCCEEEEEEEECSSSCEEEEEEEC-CTTEECSCCEEEECSSSCEEEEEEECCCT
T ss_pred ceEEecCeeEcccccCCCcceEEEEEEeCCCCceEEEeccC-CCceEeeeCcceeCCCCceEEEEEEcchh
Confidence 3789999999976 344556789999999999999997544 88889999999999999999999998654
No 12
>2qsv_A Uncharacterized protein; MCSG, structural genomics, porphyromonas gingivalis W83, PSI protein structure initiative; 2.10A {Porphyromonas gingivalis}
Probab=94.37 E-value=0.15 Score=46.02 Aligned_cols=69 Identities=14% Similarity=0.206 Sum_probs=57.0
Q ss_pred CceEEeCCeeEEeeecCCeeEEEEEEEcCCCCeEEE-EEecCCCCceeecCCceeeCCCCeEEEEEEeccCc
Q 017690 4 ELLDIQPLELKFTFEVKKQSTCVIQLGNKSDQCVAF-KVKTTSPKKYCVRPNVSIIKPKAISDFTVTMQAQR 74 (367)
Q Consensus 4 ~LL~IdP~EL~F~~p~~k~~s~tLtLtN~S~~~VAF-KVKTTaPkrY~VRPn~GvI~Pgesv~I~VtLqp~~ 74 (367)
.-+.++ ..+.|-.-.+....+.++|+|..+.++.+ +|++++ +...+.++.+.|.||++..|.|++.+..
T Consensus 118 ~~i~~~-~~~dfG~i~g~~~~~~f~i~N~G~~pL~I~~v~~sc-gct~~~~~~~~i~PGe~~~i~v~~~~~~ 187 (220)
T 2qsv_A 118 GVMELS-TYLDMGQLDGETTKAAIEIRNVGAGPLRLHSVTTRN-PALTAVPDRTEIKPGGSTLLRIAVDPQV 187 (220)
T ss_dssp CCEECC-CEEEEEECTTSCEEEEEEEEECSSSCEEEEEEEECS-TTEEEEESCSEECTTCEEEEEEEECHHH
T ss_pred CEEEEE-eEEeeeccCCCeEEEEEEEEECCCCCEEEEEEEeCC-CCEeeecCCccCCCCCEEEEEEEEecCC
Confidence 346777 77888642266778899999999999988 788774 7899999999999999999999998653
No 13
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=90.41 E-value=0.6 Score=36.83 Aligned_cols=57 Identities=16% Similarity=0.118 Sum_probs=47.6
Q ss_pred HhhHHHHHHHHhhhhhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhcc
Q 017690 268 AKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELVSFFNYILSCH 324 (367)
Q Consensus 268 ~~d~~~lk~kL~~leskL~ea~~~i~kl~ee~r~~~~erd~l~~e~~~l~~~~~~~~ 324 (367)
+-+-++|..+|..||.||--.+.+|..|++.=-.--++=|.|+..|..|..++.+..
T Consensus 6 ~~~~~~le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~ 62 (78)
T 3efg_A 6 SPRDQELEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 62 (78)
T ss_dssp --CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333457888999999999999999999999999999999999999999999987654
No 14
>3q48_A Chaperone CUPB2; IG fold, periplasmic chaperone; 2.50A {Pseudomonas aeruginosa}
Probab=86.81 E-value=2.7 Score=39.43 Aligned_cols=109 Identities=15% Similarity=0.245 Sum_probs=70.5
Q ss_pred eEEeCCeeEEeeecCCeeEEEEEEEcCCCCeEEEEEecCC----------CCceeecCCceeeCCCCeEEEEEEeccCcc
Q 017690 6 LDIQPLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTS----------PKKYCVRPNVSIIKPKAISDFTVTMQAQRV 75 (367)
Q Consensus 6 L~IdP~EL~F~~p~~k~~s~tLtLtN~S~~~VAFKVKTTa----------PkrY~VRPn~GvI~Pgesv~I~VtLqp~~~ 75 (367)
|.|+|.-+.|... ....+|+|+|.++.++.--+...+ ..-|.|.|+.-.|+||+...|.|...+. .
T Consensus 30 v~i~~TRvIy~~~---~k~~sl~l~N~~~~P~LvQsWid~~~~~~~p~~~~~pfivtPPl~rl~pg~~q~lRI~~~~~-~ 105 (257)
T 3q48_A 30 LIAQGTRVVFPAS---EREVTLRVSNTSGTPVLAQAWIDDGRQDVPPEELQVPFSVTPAVTRVEPNGGAVLRIAYLKA-P 105 (257)
T ss_dssp -CCSCSEEEEETT---CSEEEEEEEECSSSCEEEEEEEESSCCSSCGGGGCCSEEEESSEEEECTTEEEEEEEEECCC-C
T ss_pred EEEcceEEEEeCC---CcEEEEEEEeCCCCeEEEEEEEEcCCCccCcccccCCEEEcCCEEEECCCCceEEEEEECCC-C
Confidence 5667777888763 335899999999887766654332 1239999999999999999999988754 2
Q ss_pred CCCCCCCCCeEEEEEEEeCCCCCcchhhhHhhcccCCCceeEEEeEEEEeCCC
Q 017690 76 APPDLQCKDKFLIQGIVVPFGTSDEDITSDMFAKDSGKYVEEKKLRVILMSPP 128 (367)
Q Consensus 76 ~Ppd~k~kDKFLVQS~~Vp~g~td~Di~~e~Wkk~~k~~I~e~KLrV~fv~~~ 128 (367)
.|.|.. .-|.+....+|+.... + ...=......+|++-|-+..
T Consensus 106 LP~DrE--Slf~lnv~eIPp~~~~-~-------~n~Lqiair~rIKLFyRP~~ 148 (257)
T 3q48_A 106 LPTDRE--SLFWLNILEVPPRDED-E-------NNALQFSFRSRFKLFFRPSQ 148 (257)
T ss_dssp CCSSSC--EEEEEEEEEECCC-----------------CCEEEEEEEEEECTT
T ss_pred CCCCce--eEEEEEeeecCCCCCC-C-------CceEEEEEEEEEEEEEeccc
Confidence 354432 3577777777753211 0 01113345788888886544
No 15
>2co7_B SAFB chaperone, putative fimbriae assembly chaperone; pilus subunit, adhesion, strand complementation, pathogenesis, fibril protein; 1.8A {Salmonella typhimurium} SCOP: b.1.11.1 b.7.2.1 PDB: 2co6_B
Probab=86.36 E-value=4.3 Score=37.04 Aligned_cols=84 Identities=11% Similarity=0.173 Sum_probs=61.2
Q ss_pred eEEeCCeeEEeeecCCeeEEEEEEEcCCCCeEEEEEecCC-----CCceeecCCceeeCCCCeEEEEEEeccCccCCCCC
Q 017690 6 LDIQPLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTS-----PKKYCVRPNVSIIKPKAISDFTVTMQAQRVAPPDL 80 (367)
Q Consensus 6 L~IdP~EL~F~~p~~k~~s~tLtLtN~S~~~VAFKVKTTa-----PkrY~VRPn~GvI~Pgesv~I~VtLqp~~~~Ppd~ 80 (367)
|.|++.-+.|.... ...+|+|+|.++.++.--+...+ ..-|.|-|+.-.|+||+...|.|...+. ..|.|.
T Consensus 14 v~i~~TRvIy~~~~---k~~sl~l~N~~~~p~LvQsWv~~~~~~~~~pfivtPPl~rl~p~~~q~lRI~~~~~-~lP~Dr 89 (221)
T 2co7_B 14 VKLGATRVIYHAGT---AGATLSVSNPQNYPILVQSSVKAADKSSPAPFLVMPPLFRLEANQQSQLRIVRTGG-DMPTDR 89 (221)
T ss_dssp CEESCSEEEEETTS---SCEEEEEECCSSSCEEEEEEEEETTSSSBCSEEEESSEEEECTTCEEEEEEEECCC-CCCSSS
T ss_pred EEEcceEEEEcCCC---CEEEEEEEcCCCCcEEEEEEEecCCCCccCCEEEeCCEEEECCCCceEEEEEECCC-CCCCCc
Confidence 56777888888643 35799999999887766554321 2349999999999999999999998762 345442
Q ss_pred CCCCeEEEEEEEeCC
Q 017690 81 QCKDKFLIQGIVVPF 95 (367)
Q Consensus 81 k~kDKFLVQS~~Vp~ 95 (367)
-.-|.+....+|+
T Consensus 90 --Eslf~lnv~eIPp 102 (221)
T 2co7_B 90 --ETLQWVCIKAVPP 102 (221)
T ss_dssp --CEEEEEEEEEECC
T ss_pred --eEEEEEEeecCCC
Confidence 2356666667765
No 16
>2xg5_A PAPD, chaperone protein PAPD; chaperone, chaperone-surface active protein complex; HET: EC2 EC5; 2.00A {Escherichia coli} PDB: 1pdk_A 2uy6_A 2uy7_A 2j2z_A 2xg4_A* 2w07_A* 3me0_A* 1n0l_A 2wmp_A 3dpa_A 2j7l_A 1qpp_A 1qpx_A
Probab=85.62 E-value=5.5 Score=36.28 Aligned_cols=109 Identities=14% Similarity=0.177 Sum_probs=71.9
Q ss_pred eEEeCCeeEEeeecCCeeEEEEEEEcCCCC-eEEEEEecCC-------CCceeecCCceeeCCCCeEEEEEEeccC-ccC
Q 017690 6 LDIQPLELKFTFEVKKQSTCVIQLGNKSDQ-CVAFKVKTTS-------PKKYCVRPNVSIIKPKAISDFTVTMQAQ-RVA 76 (367)
Q Consensus 6 L~IdP~EL~F~~p~~k~~s~tLtLtN~S~~-~VAFKVKTTa-------PkrY~VRPn~GvI~Pgesv~I~VtLqp~-~~~ 76 (367)
|.+++.-+.|... ....+|+|+|.++. ++.--+...+ ..-|.|-|+.-.|+||+...|.|...+. ...
T Consensus 2 v~l~~TRvIy~~~---~k~~sl~l~N~~~~~p~LvQsWi~~~~~~~~~~~pfivtPPl~rl~p~~~q~lRI~~~~~~~~l 78 (218)
T 2xg5_A 2 VSLDRTRAVFDGS---EKSMTLDISNDNKQLPYLAQAWIENENQEKIITGPVIATPPVQRLEPGAKSMVRLSTTPDISKL 78 (218)
T ss_dssp EEESCSEEEEETT---SSEEEEEEEECCSSSCEEEEEEEECTTSCEECSSSEEEECSEEEECTTCEEEEEEEECGGGGGS
T ss_pred cEeCceEEEEeCC---CCEEEEEEEcCCCCCcEEEEEEEecCCCCccccCCEEEcCCeEEECCCCceEEEEEecCCCCCC
Confidence 5677777888874 34679999999887 7666654432 2349999999999999999999998762 234
Q ss_pred CCCCCCCCeEEEEEEEeCCCCCcchhhhHhhcccCCCceeEEEeEEEEeCCC
Q 017690 77 PPDLQCKDKFLIQGIVVPFGTSDEDITSDMFAKDSGKYVEEKKLRVILMSPP 128 (367)
Q Consensus 77 Ppd~k~kDKFLVQS~~Vp~g~td~Di~~e~Wkk~~k~~I~e~KLrV~fv~~~ 128 (367)
|.|. -.-|.+....+|+.. ++ . ..=......+|++-|-+..
T Consensus 79 P~Dr--ESlf~lnv~eIPp~~--~~------~-n~lqia~r~rIKlFyRP~~ 119 (218)
T 2xg5_A 79 PQDR--ESLFYFNLREIPPRS--EK------A-NVLQIALQTKIKLFYRPAA 119 (218)
T ss_dssp CSSS--CEEEEEEEEEECCCC--CC------T-TEEEEEEEEEEEEEEECGG
T ss_pred CCCc--eEEEEEEeecCCCCC--CC------C-ceEEEEehheeeEEEcCcc
Confidence 5443 335666666676531 11 0 0002335678888775543
No 17
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=83.82 E-value=3.8 Score=35.28 Aligned_cols=56 Identities=16% Similarity=0.188 Sum_probs=28.9
Q ss_pred HhHHhhHHHHHHHHhhhhhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhh
Q 017690 265 LKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELVSFFNYI 320 (367)
Q Consensus 265 ~~~~~d~~~lk~kL~~leskL~ea~~~i~kl~ee~r~~~~erd~l~~e~~~l~~~~ 320 (367)
.+++.|.-.++.+...|+..+++-++-|-.|+++--.+--+-+.+++|+..|++++
T Consensus 64 LNiadEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~ 119 (138)
T 3hnw_A 64 LNIADDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEI 119 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666666666665555555555544444444444444444444433
No 18
>1klf_A FIMC chaperone, chaperone protein FIMC; adhesin-chaperone complex, mannose-bound, chaperone/adhesin complex complex; HET: MAN; 2.79A {Escherichia coli} SCOP: b.1.11.1 b.7.2.1 PDB: 1kiu_A* 3rfz_C 1qun_A 1bf8_A 1ze3_C 3bwu_C 3jwn_C
Probab=82.31 E-value=7.3 Score=35.14 Aligned_cols=111 Identities=9% Similarity=0.154 Sum_probs=71.3
Q ss_pred eEEeCCeeEEeeecCCeeEEEEEEEcCCCC-eEEEEEecCC-----CCceeecCCceeeCCCCeEEEEEEe-ccCccCCC
Q 017690 6 LDIQPLELKFTFEVKKQSTCVIQLGNKSDQ-CVAFKVKTTS-----PKKYCVRPNVSIIKPKAISDFTVTM-QAQRVAPP 78 (367)
Q Consensus 6 L~IdP~EL~F~~p~~k~~s~tLtLtN~S~~-~VAFKVKTTa-----PkrY~VRPn~GvI~Pgesv~I~VtL-qp~~~~Pp 78 (367)
|.+++.-+.|... ....+|+|+|.++. ++.--+.... ..-|.|-|+.-.|+||+...|.|.. .+ ...|.
T Consensus 2 v~l~~TRvIy~~~---~k~~sl~l~N~~~~~p~LvQsWi~~~~~~~~~pfivtPPl~rl~p~~~q~lRI~~~~~-~~lP~ 77 (205)
T 1klf_A 2 VALGATRVIYPAG---QKQVQLAVTNNDENSTYLIQSWVENADGVKDGRFIVTPPLFAMKGKKENTLRILDATN-NQLPQ 77 (205)
T ss_dssp EEESCSEEEEETT---CSEEEEEEEECCSSCCEEEEEEEEETTSCCCSSEEEESSEEEECSSEEEEEEEEECSC-SCSCS
T ss_pred eEecceEEEEeCC---CcEEEEEEEcCCCCCcEEEEEEEecCCCCccCCEEEcCCeEEECCCCceEEEEEecCC-CCCCC
Confidence 5677777888874 34689999999887 7666554321 2359999999999999999999998 65 23454
Q ss_pred CCCCCCeEEEEEEEeCCCCCcchhhhHhhcccCCCceeEEEeEEEEeCCC
Q 017690 79 DLQCKDKFLIQGIVVPFGTSDEDITSDMFAKDSGKYVEEKKLRVILMSPP 128 (367)
Q Consensus 79 d~k~kDKFLVQS~~Vp~g~td~Di~~e~Wkk~~k~~I~e~KLrV~fv~~~ 128 (367)
|. -.-|-+....+|+.....+ ....=......+|++-|-+..
T Consensus 78 Dr--Eslf~lnv~eIPp~~~~~~------~~n~lqia~r~riKlFyRP~~ 119 (205)
T 1klf_A 78 DR--ESLFWMNVKAIPSMDKSKL------TENTLQLAIISRIKLYYRPAK 119 (205)
T ss_dssp SS--CEEEEEEEEEECCCCTTST------TSCEEEEEEEEEEEEEEECTT
T ss_pred Cc--eEEEEEEeEecCCCCcccc------CCceEEEEeeeeeeEEEcccc
Confidence 42 2356666667765321100 000002234678888775544
No 19
>1yew_A Particulate methane monooxygenase, B subunit; membrane protein, beta barrel, oxidoreductase; 2.80A {Methylococcus capsulatus} PDB: 3rgb_A
Probab=81.81 E-value=6.8 Score=39.16 Aligned_cols=70 Identities=10% Similarity=0.172 Sum_probs=50.1
Q ss_pred CCceEEeCCeeEEeeecCCeeEEEEEEEcCCCCeEEEEEecCCCCce----------------------eecCCceeeCC
Q 017690 3 EELLDIQPLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKY----------------------CVRPNVSIIKP 60 (367)
Q Consensus 3 s~LL~IdP~EL~F~~p~~k~~s~tLtLtN~S~~~VAFKVKTTaPkrY----------------------~VRPn~GvI~P 60 (367)
...+.+.-..-.|.- .++..+-+++++|.++.+|-..==+|+.-+| .|.|+.- |.|
T Consensus 247 ~~~V~~~v~~A~Y~v-pgR~l~~~~~VtN~g~~pvrlgeF~tA~vrFln~~~~~~~~~~P~~lla~~gL~vsd~~p-I~P 324 (382)
T 1yew_A 247 APTVSVKVEDATYRV-PGRAMRMKLTITNHGNSPIRLGEFYTASVRFLDSDVYKDTTGYPEDLLAEDGLSVSDNSP-LAP 324 (382)
T ss_dssp CCSEEEEEEEEEEES-SCSEEEEEEEEEECSSSCEEEEEEECSSCEEECTTTCCCCSCCCGGGEETTCEEESCCSC-BCT
T ss_pred CCceEEEeeccEEec-CCcEEEEEEEEEcCCCCceEeeeEEeccEEEeCCcccccCCCChHHhhccCCceeCCCCC-cCC
Confidence 344555555566665 4788899999999999999887555555444 3344433 899
Q ss_pred CCeEEEEEEeccCc
Q 017690 61 KAISDFTVTMQAQR 74 (367)
Q Consensus 61 gesv~I~VtLqp~~ 74 (367)
|++.+|.|+.|...
T Consensus 325 GETr~~~v~a~da~ 338 (382)
T 1yew_A 325 GETRTVDVTASDAA 338 (382)
T ss_dssp TCEEEEEEEEECHH
T ss_pred CceeEEEEEeehHH
Confidence 99999999998543
No 20
>4djm_A DRAB; chaperone, PILI; 2.52A {Escherichia coli}
Probab=80.43 E-value=8.4 Score=35.70 Aligned_cols=84 Identities=17% Similarity=0.186 Sum_probs=59.3
Q ss_pred eEEeCCeeEEeeecCCeeEEEEEEEcCCCCeEEEEEecC-----CCCceeecCCceeeCCCCeEEEEEEeccCccCCCCC
Q 017690 6 LDIQPLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTT-----SPKKYCVRPNVSIIKPKAISDFTVTMQAQRVAPPDL 80 (367)
Q Consensus 6 L~IdP~EL~F~~p~~k~~s~tLtLtN~S~~~VAFKVKTT-----aPkrY~VRPn~GvI~Pgesv~I~VtLqp~~~~Ppd~ 80 (367)
|.|.+.-+.|.... ...+|+|+|.++.++.--+... ...-|.|.|+.-.|+||+...|.|...+. ..|.|.
T Consensus 24 v~l~~TRvIy~~~~---k~~sl~l~N~~~~P~LvQsWv~~~~~~~~~pfivtPPlfRlep~~~q~lRIi~~~~-~LP~DR 99 (239)
T 4djm_A 24 LHLGATRVVYNPAS---SGETLTVINDQDYPMLVQSEVLSEDQKSPAPFVVTPPLFRLDGQQSSRLRIVRTGG-EFPPDR 99 (239)
T ss_dssp CEESCSEEEECTTS---SCEEEEEEECSSSCEEEEEEEECTTSSSBCSEEEESSEEEECTTEEEEEEEEECSC-CCCSSS
T ss_pred EEEcceEEEEeCCC---CEEEEEEEeCCCCcEEEEEEEEcCCCCccCCEEEcCCeEEECCCCceEEEEEECCC-CCCCCc
Confidence 56777788888643 3579999999887765544321 12349999999999999999999988754 245442
Q ss_pred CCCCeEEEEEEEeCC
Q 017690 81 QCKDKFLIQGIVVPF 95 (367)
Q Consensus 81 k~kDKFLVQS~~Vp~ 95 (367)
. .-|.+....+|+
T Consensus 100 E--Slf~lnv~eIPp 112 (239)
T 4djm_A 100 E--SLQWICVKGIPP 112 (239)
T ss_dssp C--EEEEEEEEEECC
T ss_pred e--EEEEEEEEecCC
Confidence 2 346666666665
No 21
>1l4i_A SFAE protein; periplasmic chaperone, immunoglobulin fold; 2.20A {Escherichia coli} SCOP: b.1.11.1 b.7.2.1
Probab=78.71 E-value=11 Score=33.85 Aligned_cols=111 Identities=8% Similarity=0.183 Sum_probs=70.1
Q ss_pred eEEeCCeeEEeeecCCeeEEEEEEEcCCC-CeEEEEEecCC-----CCceeecCCceeeCCCCeEEEEEE-eccCccCCC
Q 017690 6 LDIQPLELKFTFEVKKQSTCVIQLGNKSD-QCVAFKVKTTS-----PKKYCVRPNVSIIKPKAISDFTVT-MQAQRVAPP 78 (367)
Q Consensus 6 L~IdP~EL~F~~p~~k~~s~tLtLtN~S~-~~VAFKVKTTa-----PkrY~VRPn~GvI~Pgesv~I~Vt-Lqp~~~~Pp 78 (367)
|.+++.-+.|... ....+|+|+|.++ .++.--+...+ ..-|.|-|+.-.|+||+...|.|. ... ...|.
T Consensus 2 v~l~~TRvIy~~~---~k~~sl~l~N~~~~~p~LvQsWv~~~~~~~~~pfivtPPl~rl~p~~~q~lRI~~~~~-~~lP~ 77 (206)
T 1l4i_A 2 VALGATRVIYPEG---QKQVQLAVTNNDDKSSYLIQSWIENAEGKKDARFVITPPLFSMQGKKENTLRIIDATN-GQMPE 77 (206)
T ss_dssp EEESCSEEEEETT---CSEEEEEEEECCTTCEEEEEEEEEETTSCBCSSEEEESSEEEEESSEEEEEEEEECCT-TCSCS
T ss_pred eEeCceEEEEeCC---CcEEEEEEEeCCCCccEEEEEEEecCCCCccCCEEEcCCeEEECCCCceEEEEEecCC-CCCCC
Confidence 5677777888864 3468999999986 77666554321 234999999999999999999998 653 33454
Q ss_pred CCCCCCeEEEEEEEeCCCCCcchhhhHhhcccCCCceeEEEeEEEEeCCC
Q 017690 79 DLQCKDKFLIQGIVVPFGTSDEDITSDMFAKDSGKYVEEKKLRVILMSPP 128 (367)
Q Consensus 79 d~k~kDKFLVQS~~Vp~g~td~Di~~e~Wkk~~k~~I~e~KLrV~fv~~~ 128 (367)
|.. .-|.+....+|+.....+ ....=......+|++-|-+..
T Consensus 78 DrE--slf~lnv~eIPp~~~~~~------~~n~lqia~r~riKlFyRP~~ 119 (206)
T 1l4i_A 78 DRE--SLFWVNVKAIPAMDKAKT------GENYLQFAIVSRIKLLYRPQG 119 (206)
T ss_dssp SSC--EEEEEEEEEEECCC--------------CCCEEEEEEEEEEECTT
T ss_pred Cce--EEEEEEeecCCCCccccc------CCceEEEEhhheeeEEEeccc
Confidence 433 356666666654211110 000113446788888776554
No 22
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=78.33 E-value=9 Score=32.92 Aligned_cols=56 Identities=18% Similarity=0.244 Sum_probs=33.2
Q ss_pred HHhhHHHHHHHHhhhhhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhh
Q 017690 267 LAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELVSFFNYILS 322 (367)
Q Consensus 267 ~~~d~~~lk~kL~~leskL~ea~~~i~kl~ee~r~~~~erd~l~~e~~~l~~~~~~ 322 (367)
+-+..++|...+..++..+..-.+-++.+.++-....+|...|+.|...|++++.+
T Consensus 73 ~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~ 128 (138)
T 3hnw_A 73 AKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVK 128 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555556666666555555555556666666666666666666666666665543
No 23
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=74.01 E-value=8 Score=31.86 Aligned_cols=51 Identities=24% Similarity=0.438 Sum_probs=36.9
Q ss_pred HhhHHHHHHHHhhhhhhhhhhhHHHHHHH-------HHhhhhhHHHHHHHHHHHHHHh
Q 017690 268 AKDFEELKLKLNVMDSQLREAEHTIRKLM-------EARKLATREKDMLKHELVSFFN 318 (367)
Q Consensus 268 ~~d~~~lk~kL~~leskL~ea~~~i~kl~-------ee~r~~~~erd~l~~e~~~l~~ 318 (367)
.+-++-|+-+|..|++++...+..+.+|+ .-|+..-+++..+.+||+.|.-
T Consensus 4 ~~~~e~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTa 61 (97)
T 2eqb_B 4 GSNYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTA 61 (97)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456677777777777777777776665 4466777899999999998864
No 24
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=72.39 E-value=6 Score=30.96 Aligned_cols=38 Identities=24% Similarity=0.267 Sum_probs=35.2
Q ss_pred hhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhh
Q 017690 284 QLREAEHTIRKLMEARKLATREKDMLKHELVSFFNYIL 321 (367)
Q Consensus 284 kL~ea~~~i~kl~ee~r~~~~erd~l~~e~~~l~~~~~ 321 (367)
=|..|-.-|..|.++.+.-.+|++.|+.|...|++++.
T Consensus 41 iL~kA~~yI~~L~~~~~~l~~e~~~L~~e~~~L~~~L~ 78 (80)
T 1nlw_A 41 LLTKAKLHIKKLEDSDRKAVHQIDQLQREQRHLKRQLE 78 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 57889999999999999999999999999999998875
No 25
>4ay0_A Chaperone protein CAF1M; amino acid motifs, bacterial capsules, bacterial proteins, gene expression regulation, molecular chaperones, binding; 1.52A {Yersinia pestis} PDB: 1p5v_A 1p5u_A 1z9s_A 2os7_A 3dos_A 3dpb_A 3dsn_A 4b0m_M 4az8_A 4ayf_A
Probab=71.90 E-value=30 Score=31.46 Aligned_cols=108 Identities=11% Similarity=0.209 Sum_probs=65.6
Q ss_pred eEEeCCeeEEeeecCCeeEEEEEEEcCCCCeEEEEEecCC-------CCceeecCCceeeCCCCeEEEEEEeccCccCCC
Q 017690 6 LDIQPLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTS-------PKKYCVRPNVSIIKPKAISDFTVTMQAQRVAPP 78 (367)
Q Consensus 6 L~IdP~EL~F~~p~~k~~s~tLtLtN~S~~~VAFKVKTTa-------PkrY~VRPn~GvI~Pgesv~I~VtLqp~~~~Pp 78 (367)
|.|+-.-+.|+.. ....+|+|+|.++.++.--....+ ..-|.|.|+.-.|+||+...|.|...+. ..|.
T Consensus 14 v~l~~TRvIy~~~---~k~~sl~l~N~~~~p~LvQswv~~~~~~~~~~~pFivtPPl~Rl~p~~~q~lRI~~~~~-~LP~ 89 (218)
T 4ay0_A 14 VTIGESRIIYPLD---AAGVMVSVKNTQDYPVLIQSRIYDENKEKESEDPFVVTPPLFRLDAKQQNSLRIAQAGG-VFPR 89 (218)
T ss_dssp EEESCCEEEEETT---CSCEEEEEECCSSSCEEEEEEEECTTSCCCSSCSEEEESSEEEECTTCEEEEEEEECSC-CCCS
T ss_pred EEECceEEEECCC---CcEEEEEEEcCCCCCEEEEEEEecCCCCccccCCEEECCCeEEeCCCCceEEEEEecCC-CCCc
Confidence 4555556778753 335889999998887665543311 1239999999999999999999988754 3454
Q ss_pred CCCCCCeEEEEEEEeCCCCCcchhhhHhhcccCCCceeEEEeEEEEeCC
Q 017690 79 DLQCKDKFLIQGIVVPFGTSDEDITSDMFAKDSGKYVEEKKLRVILMSP 127 (367)
Q Consensus 79 d~k~kDKFLVQS~~Vp~g~td~Di~~e~Wkk~~k~~I~e~KLrV~fv~~ 127 (367)
|. ---|.+....+|+...+. ... =......+|++-|-+.
T Consensus 90 DR--ESlf~lnv~eIPp~~~~~------~n~--lqia~r~rIKlFyRP~ 128 (218)
T 4ay0_A 90 DK--ESLKWLCVKGIPPKDEDI------WVD--VQFAINNCIKLLVRPN 128 (218)
T ss_dssp SS--CEEEEEEEEEECC----------------------CEEEEEEECT
T ss_pred Cc--EEEEEEEEEecCCCCccc------cce--eEEEEEEEEEEEEcCc
Confidence 42 234777777777532111 110 1233456788877554
No 26
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=70.94 E-value=12 Score=29.03 Aligned_cols=17 Identities=24% Similarity=0.325 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHhhhh
Q 017690 305 EKDMLKHELVSFFNYIL 321 (367)
Q Consensus 305 erd~l~~e~~~l~~~~~ 321 (367)
.+.++-+|+..|.|||.
T Consensus 35 ~~~~~E~ev~~L~kKiq 51 (81)
T 1ic2_A 35 RSKQLEDELVALQKKLK 51 (81)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHH
Confidence 34445555555555553
No 27
>3gfu_C Chaperone protein FAEE; immunoglobulin like fold, chaperone, fimbrium, immunoglobulin domain, periplasm, plasmid, cell adhesion; 1.99A {Escherichia coli} PDB: 3gew_B 3f65_A 3f6i_A 3f6l_A
Probab=70.56 E-value=24 Score=32.43 Aligned_cols=106 Identities=13% Similarity=0.206 Sum_probs=66.6
Q ss_pred eEEeCCeeEEeeecCCeeEEEEEEEcCCCC-eEEEEEecC--C----CCceeecCCceeeCCCCeEEEEEEeccCccCCC
Q 017690 6 LDIQPLELKFTFEVKKQSTCVIQLGNKSDQ-CVAFKVKTT--S----PKKYCVRPNVSIIKPKAISDFTVTMQAQRVAPP 78 (367)
Q Consensus 6 L~IdP~EL~F~~p~~k~~s~tLtLtN~S~~-~VAFKVKTT--a----PkrY~VRPn~GvI~Pgesv~I~VtLqp~~~~Pp 78 (367)
+.++..-+.|... ....+|+|+|.++. ++.--+... . ..-|.|.|+.-.|+||+...|.|...+. ..|.
T Consensus 2 ~~l~~TRvIy~~~---~k~~sl~l~N~~~~~p~LvQsWid~~~~~~~~~pfivtPPlfRlep~~~q~lRIi~~~~-~LP~ 77 (224)
T 3gfu_C 2 LAVDQTRYIFRGD---KDALTITVTNNDKERTFGGQAWVDNIVEKDTRPTFVVTPSFFKVKPNGQQTLRIIMASD-HLPK 77 (224)
T ss_dssp EECSCSEEEEETT---SSCEEEEEEECCSSCCEEEEEEEEESSCCSCSCSEEEESSEEEECTTCEEEEEEEECSC-CCCS
T ss_pred ccccceEEEEeCC---CceEEEEEEeCCCCccEEEEEEEecCCCCcccCCEEEcCCeEEECCCCceEEEEEECCC-CCCC
Confidence 3455566888763 33579999999875 443333221 1 2249999999999999999999988753 3454
Q ss_pred CCCCCCeEEEEEEEeCCCCCcchhhhHhhcccCCCceeEEEeEEEEeCC
Q 017690 79 DLQCKDKFLIQGIVVPFGTSDEDITSDMFAKDSGKYVEEKKLRVILMSP 127 (367)
Q Consensus 79 d~k~kDKFLVQS~~Vp~g~td~Di~~e~Wkk~~k~~I~e~KLrV~fv~~ 127 (367)
|. -.-|.+....+|+.. .. ..=......+|++-|-+.
T Consensus 78 DR--ESlf~lnv~eIPp~~-~~---------n~Lqiair~rIKLFyRP~ 114 (224)
T 3gfu_C 78 DK--ESVYWLNLQDIPPAL-EG---------SGIAVALRTKLKLFYRPK 114 (224)
T ss_dssp SS--CEEEEEEEEEECCCC-SS---------SBCCEEEEEEEEEEEECG
T ss_pred Cc--eEEEEEEeecCCCCC-CC---------CeEEEEEEEEeeEEEccc
Confidence 42 234666666666531 10 111344677788877554
No 28
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=69.30 E-value=11 Score=30.09 Aligned_cols=46 Identities=24% Similarity=0.224 Sum_probs=28.4
Q ss_pred hhHHHHHHHHhhhhhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhh
Q 017690 269 KDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELVSFFNYIL 321 (367)
Q Consensus 269 ~d~~~lk~kL~~leskL~ea~~~i~kl~ee~r~~~~erd~l~~e~~~l~~~~~ 321 (367)
+.+.-.++-+-+++|||+||+.-...|-+| -.+|+.+|..||..++
T Consensus 31 EELs~vr~~ni~~eskL~eae~rn~eL~~e-------~~~l~~~~eelq~~~~ 76 (81)
T 1wt6_A 31 REMEAIRTDNQNFASQLREAEARNRDLEAH-------VRQLQERMELLQAEGA 76 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHccch
Confidence 344445556667777888888777777443 5567777777765543
No 29
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=68.98 E-value=12 Score=36.50 Aligned_cols=56 Identities=13% Similarity=0.140 Sum_probs=45.2
Q ss_pred HHhhHHHHHHHHhhhhhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhh
Q 017690 267 LAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELVSFFNYILS 322 (367)
Q Consensus 267 ~~~d~~~lk~kL~~leskL~ea~~~i~kl~ee~r~~~~erd~l~~e~~~l~~~~~~ 322 (367)
+++++++|..++..+|..+..++..|..|++.-...-..=+.|++.+..|+.+...
T Consensus 3 ~~~~~~~~~~~~~~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l~~~~~~ 58 (323)
T 1lwu_C 3 GQKTVQKILEEVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIRQTCSR 58 (323)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 67899999999999999999999999999887766666667788888888876654
No 30
>3rfr_A PMOB; membrane, oxidoreductase; 2.68A {Methylocystis SP} PDB: 3chx_A
Probab=68.48 E-value=21 Score=36.02 Aligned_cols=67 Identities=15% Similarity=0.188 Sum_probs=47.9
Q ss_pred ceEEeCCeeEEeeecCCeeEEEEEEEcCCCCeEEEEEecCCCCcee------e---------------cCCceeeCCCCe
Q 017690 5 LLDIQPLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYC------V---------------RPNVSIIKPKAI 63 (367)
Q Consensus 5 LL~IdP~EL~F~~p~~k~~s~tLtLtN~S~~~VAFKVKTTaPkrY~------V---------------RPn~GvI~Pges 63 (367)
.+.+.-..-.|.- .++..+-+++++|.++.+|-+.==+|+.-+|. . .|+ =|.||++
T Consensus 283 ~V~~~v~~A~Y~v-pgR~l~~~~~VtN~g~~pvrlgeF~tA~vrFlnp~v~~~~~~~p~~l~a~~GL~s~~--pI~PGET 359 (419)
T 3rfr_A 283 QVTTELNGGVYKV-PGRELTINVKVKNGTSQPVRLGEYTAAGLRFLNPTVFTQKPDFPDYLLADRGLSNDD--VIAPGES 359 (419)
T ss_dssp CCEEEEEEEEEES-SSSEEEEEEEEECCSSSCBEEEEEECSSCEEECTTTCSSCCCCCTTTEESCCCCCCC--CBCTTCE
T ss_pred ceEEEEeceEEec-CCcEEEEEEEEecCCCCceEEeeEEEccEEEeCcccccCCCCCchhhhhccCCCCCC--CcCCCcc
Confidence 3445445566665 46888999999999999998884444444433 1 234 5999999
Q ss_pred EEEEEEeccCc
Q 017690 64 SDFTVTMQAQR 74 (367)
Q Consensus 64 v~I~VtLqp~~ 74 (367)
.+|.|..+.-.
T Consensus 360 rt~~V~a~da~ 370 (419)
T 3rfr_A 360 KEIVVKIQDAR 370 (419)
T ss_dssp EEEEEEEECHH
T ss_pred eEEEEEeehHH
Confidence 99999998533
No 31
>2r39_A FIXG-related protein; structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG, iron, iron-sulfur; 2.02A {Vibrio parahaemolyticus}
Probab=68.02 E-value=20 Score=29.08 Aligned_cols=50 Identities=12% Similarity=0.255 Sum_probs=38.2
Q ss_pred EEEEEEEcCCCCeEEEEEecCCCCceee-cCCceeeCCCCeEEEEEEeccC
Q 017690 24 TCVIQLGNKSDQCVAFKVKTTSPKKYCV-RPNVSIIKPKAISDFTVTMQAQ 73 (367)
Q Consensus 24 s~tLtLtN~S~~~VAFKVKTTaPkrY~V-RPn~GvI~Pgesv~I~VtLqp~ 73 (367)
..+|+|.|.+.+...|.++......+.+ .|..=.+.||+...+.|.+...
T Consensus 34 ~Ytlki~Nkt~~~~~~~l~v~g~~~l~~~g~~~i~v~~g~~~~~~v~v~~~ 84 (118)
T 2r39_A 34 TYTLKVINKTQQVQEYNLDVKGLNDVSWYGKQTIQVEPGEVLNLPMSLGAD 84 (118)
T ss_dssp EEEEEEEECSSSCEEEEEEEESCSSCEEESCCEEEECTTCEEEEEEEEEEC
T ss_pred EEEEEEEECCCCCEEEEEEEeCCcccEEeCCCcEEECCCCEEEEEEEEEEC
Confidence 6799999999999999988876444654 3554578899988877776543
No 32
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=67.86 E-value=9.6 Score=37.77 Aligned_cols=56 Identities=20% Similarity=0.284 Sum_probs=46.4
Q ss_pred HhHHhhHHHHHHHHhhhhhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhh
Q 017690 265 LKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELVSFFNYI 320 (367)
Q Consensus 265 ~~~~~d~~~lk~kL~~leskL~ea~~~i~kl~ee~r~~~~erd~l~~e~~~l~~~~ 320 (367)
..+...+.+|+.+.+.++.++++++.-+..|.+.-+...++|.+|-.++..|+-.|
T Consensus 6 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elkgnI 61 (403)
T 4etp_A 6 AALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELRGNI 61 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCe
Confidence 34667788888888888888888888888888888888889999999999988655
No 33
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=66.15 E-value=24 Score=28.37 Aligned_cols=56 Identities=16% Similarity=0.230 Sum_probs=40.2
Q ss_pred hHHhhHHHHHHHHhhhhhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhh
Q 017690 266 KLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELVSFFNYIL 321 (367)
Q Consensus 266 ~~~~d~~~lk~kL~~leskL~ea~~~i~kl~ee~r~~~~erd~l~~e~~~l~~~~~ 321 (367)
.+-.++..|+-|+..++..|+.++.........-..+...++.-..|+..|.|+|.
T Consensus 41 ~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~evasLnRriq 96 (101)
T 3u59_A 41 QLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEAEVASLNRRIQ 96 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677888888888888888777766665555555555566666778889988874
No 34
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=62.86 E-value=29 Score=29.28 Aligned_cols=59 Identities=25% Similarity=0.323 Sum_probs=34.7
Q ss_pred CchhHHHHhHHhhHHHHHHHHhhhhhhhhhhhHHHHHHHH----------H----hhhhhHHHHHHHHHHHHHHhh
Q 017690 258 PAKDILELKLAKDFEELKLKLNVMDSQLREAEHTIRKLME----------A----RKLATREKDMLKHELVSFFNY 319 (367)
Q Consensus 258 ~~~~~~~~~~~~d~~~lk~kL~~leskL~ea~~~i~kl~e----------e----~r~~~~erd~l~~e~~~l~~~ 319 (367)
.-+|.+.-+|..+++-|+..|..+ .-||.+.|..|+. + +..+.-|-+.|+.|+..|++.
T Consensus 11 d~rD~~Ie~Lkreie~lk~ele~l---~~E~q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l~~~ 83 (120)
T 3i00_A 11 DEKDHLIERLYREISGLKAQLENM---KTESQRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDELRRQ 83 (120)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666677777777777666665 4556666665554 1 222233455677777776543
No 35
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=62.45 E-value=14 Score=45.87 Aligned_cols=55 Identities=25% Similarity=0.256 Sum_probs=47.3
Q ss_pred HHhhHHHHHHHHhhhhhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhh
Q 017690 267 LAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELVSFFNYIL 321 (367)
Q Consensus 267 ~~~d~~~lk~kL~~leskL~ea~~~i~kl~ee~r~~~~erd~l~~e~~~l~~~~~ 321 (367)
+.+..+..+.+|+..+.+|.+-+..|.+|+++-...++|++.|+.||....+|+.
T Consensus 2019 ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~ 2073 (3245)
T 3vkg_A 2019 LENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVD 2073 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5567777788888888888888999999999999999999999999998877753
No 36
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=61.79 E-value=32 Score=27.79 Aligned_cols=56 Identities=18% Similarity=0.217 Sum_probs=35.9
Q ss_pred hHHhhHHHHHHHHhhhhhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhh
Q 017690 266 KLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELVSFFNYIL 321 (367)
Q Consensus 266 ~~~~d~~~lk~kL~~leskL~ea~~~i~kl~ee~r~~~~erd~l~~e~~~l~~~~~ 321 (367)
.+-.++..|.-|+..+|..|+.++......+..-..+..-+.....|+..|.|+|-
T Consensus 41 ~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE~ev~~L~Rriq 96 (101)
T 3u1c_A 41 QLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAESEVASLNRRIQ 96 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567777777887777777776665554444333344444555558888888874
No 37
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=58.41 E-value=18 Score=32.37 Aligned_cols=69 Identities=14% Similarity=0.230 Sum_probs=56.4
Q ss_pred chhHHHHhHHhhHHHHHHHHhhhhhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhccchhhhhh
Q 017690 259 AKDILELKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELVSFFNYILSCHYDCLLWT 331 (367)
Q Consensus 259 ~~~~~~~~~~~d~~~lk~kL~~leskL~ea~~~i~kl~ee~r~~~~erd~l~~e~~~l~~~~~~~~~~~~~~~ 331 (367)
++.+-...+..-.+-|+++|..|...-..-+..+....++.|..-|+...||=||..|++.--. |+.|-
T Consensus 86 ~~~~E~~~l~~N~e~LksRL~~l~~sk~~L~e~L~~q~~~~relERemnsLKPeL~qL~K~rD~----yl~wL 154 (170)
T 3l4q_C 86 GNEKEMQRILLNSERLKSRIAEIHESRTKLEQELRAQASDNREIDKRMNSLKPDLMQLRKIRDQ----YLVWL 154 (170)
T ss_dssp CCSSSTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH----HHHHH
Confidence 3444445688889999999999999888888888999999999999999999999999876432 46673
No 38
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=58.30 E-value=9.4 Score=35.18 Aligned_cols=59 Identities=17% Similarity=0.119 Sum_probs=40.7
Q ss_pred HHhhHHHHHHHHhhhhhhhhhhhHHHHHHHHHhh--hhhHHHHHHHHHHHHHHhhhhhccc
Q 017690 267 LAKDFEELKLKLNVMDSQLREAEHTIRKLMEARK--LATREKDMLKHELVSFFNYILSCHY 325 (367)
Q Consensus 267 ~~~d~~~lk~kL~~leskL~ea~~~i~kl~ee~r--~~~~erd~l~~e~~~l~~~~~~~~~ 325 (367)
+...+..++..+..+|..+.++...|.+.++.-. ++.+|-+.|++|+.++.++|...--
T Consensus 51 ~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~~~kE~~aL~kEie~~~~~i~~lE~ 111 (256)
T 3na7_A 51 LEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIKSERELRSLNIEEDIAKERSNQANR 111 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556666666666666666666666666554322 3678999999999999998876543
No 39
>1s1c_X RHO-associated, coiled-coil containing protein kinase 1; GTPase, RHO kinase, ROCK, signaling protein; HET: GNP; 2.60A {Homo sapiens} SCOP: h.1.27.1
Probab=57.66 E-value=28 Score=27.08 Aligned_cols=48 Identities=19% Similarity=0.231 Sum_probs=37.8
Q ss_pred hHHhhHHHHHHHHhhhhhhhhhhhHHHHHHHHHhhhhhHH--HHHHHHHH
Q 017690 266 KLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATRE--KDMLKHEL 313 (367)
Q Consensus 266 ~~~~d~~~lk~kL~~leskL~ea~~~i~kl~ee~r~~~~e--rd~l~~e~ 313 (367)
-|++|+++|......+--||+.+..-+.++++|...++.+ +.+|++|-
T Consensus 3 ~L~k~i~~l~~E~eel~~klk~~~ee~~~~~eee~~~~~~~lek~L~~E~ 52 (71)
T 1s1c_X 3 MLTKDIEILRRENEELTEKMKKAEEEYKLEKEEEISNLKAAFEKNINTER 52 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4889999999999999999999999999998777664433 34566664
No 40
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=56.92 E-value=47 Score=28.15 Aligned_cols=52 Identities=6% Similarity=-0.006 Sum_probs=20.7
Q ss_pred hhHHHHHHHHhhhhhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhh
Q 017690 269 KDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELVSFFNYI 320 (367)
Q Consensus 269 ~d~~~lk~kL~~leskL~ea~~~i~kl~ee~r~~~~erd~l~~e~~~l~~~~ 320 (367)
.++..++.++..++..+.++...+..++++......+...++.++..+...+
T Consensus 27 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (284)
T 1c1g_A 27 ADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSEALKDAQEKLELAEKKA 78 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333344444444444444443333333344444444333333
No 41
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=56.57 E-value=27 Score=34.48 Aligned_cols=60 Identities=12% Similarity=0.262 Sum_probs=52.3
Q ss_pred chhHHHHhHHhhHHHHHHHHhhhhhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHh
Q 017690 259 AKDILELKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELVSFFN 318 (367)
Q Consensus 259 ~~~~~~~~~~~d~~~lk~kL~~leskL~ea~~~i~kl~ee~r~~~~erd~l~~e~~~l~~ 318 (367)
++++....+..-.+.||++|+.+...-+.-+.-+..-.++.|..-|+-..||=||.-|+|
T Consensus 195 ~~~~e~~~~~~n~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~lkp~l~ql~k 254 (373)
T 3hhm_B 195 GNEKEIQRIMHNYDKLKSRISEIIDSRRRLEEDLKKQAAEYREIDKRMNSIKPDLIQLRK 254 (373)
T ss_dssp TCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cChHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHH
Confidence 455566778999999999999999877777777888899999999999999999999987
No 42
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=55.47 E-value=20 Score=28.39 Aligned_cols=39 Identities=15% Similarity=0.175 Sum_probs=34.7
Q ss_pred hhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhh
Q 017690 284 QLREAEHTIRKLMEARKLATREKDMLKHELVSFFNYILS 322 (367)
Q Consensus 284 kL~ea~~~i~kl~ee~r~~~~erd~l~~e~~~l~~~~~~ 322 (367)
=|..|-.-|..|.++.+.-..|.+.|+++-..|++++..
T Consensus 46 iL~~A~~YI~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~ 84 (88)
T 1nkp_A 46 ILKKATAYILSVQAEEQKLISEEDLLRKRREQLKHKLEQ 84 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367888899999999999999999999999999998863
No 43
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=54.50 E-value=17 Score=28.65 Aligned_cols=57 Identities=16% Similarity=0.285 Sum_probs=28.9
Q ss_pred hHHHHHHHHhhhhhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhc--cchhhh
Q 017690 270 DFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELVSFFNYILSC--HYDCLL 329 (367)
Q Consensus 270 d~~~lk~kL~~leskL~ea~~~i~kl~ee~r~~~~erd~l~~e~~~l~~~~~~~--~~~~~~ 329 (367)
+++.|++..+.||..|.++|.....=.+.-...+ ..|..|+..+|..+..+ .|.+|+
T Consensus 4 eie~L~~q~~~Le~~l~e~E~~~~~~l~~~q~~i---~~lE~el~~~r~e~~~ql~EYq~Ll 62 (86)
T 1x8y_A 4 QLSQLQCQLAAKEAKLRDLEDSLARERDTSRRLL---AEKEREMAEMRARMQQQLDEYQELL 62 (86)
T ss_dssp --------CTTHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888888888888888875544333333333 23456666666666644 455554
No 44
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=53.94 E-value=10 Score=24.72 Aligned_cols=24 Identities=33% Similarity=0.527 Sum_probs=18.7
Q ss_pred HHhhHHHHHHHHhhhhhhhhhhhH
Q 017690 267 LAKDFEELKLKLNVMDSQLREAEH 290 (367)
Q Consensus 267 ~~~d~~~lk~kL~~leskL~ea~~ 290 (367)
+.+.+--|.|||..||.||+--|+
T Consensus 6 lekkcaalesklqalekklealeh 29 (31)
T 3ljm_A 6 LEKKCAALESKLQALEKKLEALEH 29 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc
Confidence 567788888899888888876553
No 45
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=53.77 E-value=23 Score=27.20 Aligned_cols=39 Identities=15% Similarity=0.129 Sum_probs=33.6
Q ss_pred hhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhc
Q 017690 285 LREAEHTIRKLMEARKLATREKDMLKHELVSFFNYILSC 323 (367)
Q Consensus 285 L~ea~~~i~kl~ee~r~~~~erd~l~~e~~~l~~~~~~~ 323 (367)
|+.|-.-|..|.++...-..|.+.|++|...|+.++..-
T Consensus 42 L~~Ai~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~L 80 (83)
T 1nkp_B 42 LDKATEYIQYMRRKNHTHQQDIDDLKRQNALLEQQVRAL 80 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 667888899999888888899999999999999988653
No 46
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=53.60 E-value=45 Score=30.56 Aligned_cols=59 Identities=15% Similarity=0.010 Sum_probs=43.3
Q ss_pred HHhHHhhHHHHHHHHhhhhhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhh
Q 017690 264 ELKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELVSFFNYILS 322 (367)
Q Consensus 264 ~~~~~~d~~~lk~kL~~leskL~ea~~~i~kl~ee~r~~~~erd~l~~e~~~l~~~~~~ 322 (367)
+..+..-..+|...|..++..+.....-|.+++.+-...-++...++.++..++.+|.+
T Consensus 20 i~~l~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~ 78 (256)
T 3na7_A 20 IDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIAS 78 (256)
T ss_dssp HHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455556666777777777777777777778777777778888888888888777764
No 47
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=53.07 E-value=44 Score=26.95 Aligned_cols=49 Identities=14% Similarity=0.205 Sum_probs=31.1
Q ss_pred HHHHHhhhhhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhh
Q 017690 274 LKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELVSFFNYILS 322 (367)
Q Consensus 274 lk~kL~~leskL~ea~~~i~kl~ee~r~~~~erd~l~~e~~~l~~~~~~ 322 (367)
.|-|++.|....+.|..-...+...-+..-+++.++-+|+..|.|||.-
T Consensus 7 IKkKm~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~ 55 (101)
T 3u1c_A 7 IKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRV 55 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 4455555555555555555555555566667777788888888888763
No 48
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=52.48 E-value=21 Score=25.30 Aligned_cols=36 Identities=22% Similarity=0.355 Sum_probs=26.2
Q ss_pred HHhhhhhhhhhhhHHHHHHHHHhhhhhHHHHHHHHH
Q 017690 277 KLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHE 312 (367)
Q Consensus 277 kL~~leskL~ea~~~i~kl~ee~r~~~~erd~l~~e 312 (367)
=|+.||++-++-+.....|.|--+|-.+|-.||.|=
T Consensus 4 Yl~eLE~r~k~le~~naeLEervstLq~EN~mLRqv 39 (42)
T 2oqq_A 4 YLSELENRVKDLENKNSELEERLSTLQNENQMLRHI 39 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 356677777777777777777777777787887763
No 49
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=51.99 E-value=18 Score=29.17 Aligned_cols=39 Identities=18% Similarity=0.242 Sum_probs=29.2
Q ss_pred HHHHHHhhhhhhhhhhhHHHHHHHHHhhh-hhHHHHHHHH
Q 017690 273 ELKLKLNVMDSQLREAEHTIRKLMEARKL-ATREKDMLKH 311 (367)
Q Consensus 273 ~lk~kL~~leskL~ea~~~i~kl~ee~r~-~~~erd~l~~ 311 (367)
+=|..+...|..|+||+.+|..+.-|-|. ....|..++.
T Consensus 35 erk~~i~~ie~~l~EA~ell~qMelE~r~~p~~~R~~~~~ 74 (102)
T 1vcs_A 35 EKKQMVANVEKQLEEARELLEQMDLEVREIPPQSRGMYSN 74 (102)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHhHHHHHH
Confidence 33667888899999999999999888665 4455665543
No 50
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=51.98 E-value=13 Score=33.85 Aligned_cols=44 Identities=16% Similarity=0.188 Sum_probs=24.0
Q ss_pred hhhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhcc
Q 017690 281 MDSQLREAEHTIRKLMEARKLATREKDMLKHELVSFFNYILSCH 324 (367)
Q Consensus 281 leskL~ea~~~i~kl~ee~r~~~~erd~l~~e~~~l~~~~~~~~ 324 (367)
++++|+.|...|.+|.-|.+.=.++=+...+|+..|++++++..
T Consensus 11 ~q~ql~~ad~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~ 54 (190)
T 4emc_A 11 VKQQIDSADLLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLN 54 (190)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677778888887777777666666666666666666655543
No 51
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=51.83 E-value=32 Score=29.79 Aligned_cols=50 Identities=24% Similarity=0.451 Sum_probs=34.5
Q ss_pred hhHHHHHHHHhhhhhhhhhhhHHHHHHHH-------HhhhhhHHHHHHHHHHHHHHh
Q 017690 269 KDFEELKLKLNVMDSQLREAEHTIRKLME-------ARKLATREKDMLKHELVSFFN 318 (367)
Q Consensus 269 ~d~~~lk~kL~~leskL~ea~~~i~kl~e-------e~r~~~~erd~l~~e~~~l~~ 318 (367)
+-.+-++.+|+.+.+.|.-.+..+.+|++ -|+.+-.++..+.+||+.|.-
T Consensus 25 ~~le~l~~~l~~l~~~l~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LTa 81 (135)
T 2e7s_A 25 ENYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTA 81 (135)
T ss_dssp HHHHHHHHHHHHHHHHTTTHHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555666666655556666666665 466778899999999998864
No 52
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=51.04 E-value=47 Score=27.68 Aligned_cols=49 Identities=22% Similarity=0.297 Sum_probs=27.9
Q ss_pred HHhhHHHHHHHHhhhhhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 017690 267 LAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELVS 315 (367)
Q Consensus 267 ~~~d~~~lk~kL~~leskL~ea~~~i~kl~ee~r~~~~erd~l~~e~~~ 315 (367)
|.+--..|..+|..|++.|++-+.....|..+.|-.-++-+.|+..+..
T Consensus 74 L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led 122 (129)
T 2fxo_A 74 LIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDD 122 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455666666666666666666666665555554444444444443
No 53
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=50.27 E-value=20 Score=28.59 Aligned_cols=44 Identities=11% Similarity=0.080 Sum_probs=30.7
Q ss_pred HHHHhhhhhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHh
Q 017690 275 KLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELVSFFN 318 (367)
Q Consensus 275 k~kL~~leskL~ea~~~i~kl~ee~r~~~~erd~l~~e~~~l~~ 318 (367)
|.+|.+++.++++...-|.+|+...+.-..+...|++.+.+|.+
T Consensus 2 ~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l~~ 45 (112)
T 1l8d_A 2 KKLLEELETKKTTIEEERNEITQRIGELKNKIGDLKTAIEELKK 45 (112)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34556666667777777777777777666777777777777755
No 54
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=48.45 E-value=58 Score=26.04 Aligned_cols=49 Identities=14% Similarity=0.139 Sum_probs=33.1
Q ss_pred HHHHHhhhhhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhh
Q 017690 274 LKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELVSFFNYILS 322 (367)
Q Consensus 274 lk~kL~~leskL~ea~~~i~kl~ee~r~~~~erd~l~~e~~~l~~~~~~ 322 (367)
.|-|++.|....+.|..-...+...-+..-++..++-+|+..|+|||..
T Consensus 7 iKkKm~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~ 55 (101)
T 3u59_A 7 IKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKG 55 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 4555555555555555555555566666677778888888899888863
No 55
>1uix_A RHO-associated kinase; coiled-coil, transferase; HET: MSE; 1.80A {Bos taurus} SCOP: h.1.27.1
Probab=48.33 E-value=55 Score=25.45 Aligned_cols=35 Identities=17% Similarity=0.306 Sum_probs=30.4
Q ss_pred HHhhHHHHHHHHhhhhhhhhhhhHHHHHHHHHhhh
Q 017690 267 LAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKL 301 (367)
Q Consensus 267 ~~~d~~~lk~kL~~leskL~ea~~~i~kl~ee~r~ 301 (367)
+++|+++|....+.+--||+++..-+.++++|...
T Consensus 2 ~~k~v~~l~~E~eel~~klk~~~ee~~~~~eee~~ 36 (71)
T 1uix_A 2 STSDVANLANEKEELNNKLKEAQEQLSRLKDEEIS 36 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999999999988888877665
No 56
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=48.31 E-value=46 Score=26.80 Aligned_cols=49 Identities=18% Similarity=0.238 Sum_probs=36.8
Q ss_pred HHHHHHHhhhhhhhhhhhHHHHHHHHHhhh-hhHHHHHHHHHHHHHHhhh
Q 017690 272 EELKLKLNVMDSQLREAEHTIRKLMEARKL-ATREKDMLKHELVSFFNYI 320 (367)
Q Consensus 272 ~~lk~kL~~leskL~ea~~~i~kl~ee~r~-~~~erd~l~~e~~~l~~~~ 320 (367)
++=|..+...|..|+||+..|..+.-|-|. ....|..++.=+...|+.+
T Consensus 45 e~rk~~i~~ie~~ldEA~eLl~qMelE~r~~p~s~R~~~~~klr~Yk~dL 94 (102)
T 2qyw_A 45 EEKKKLVRDFDEKQQEANETLAEMEEELRYAPLTFRNPMMSKLRNYRKDL 94 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 445778888999999999999999888665 5667887765555555444
No 57
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=47.80 E-value=46 Score=27.75 Aligned_cols=50 Identities=18% Similarity=0.227 Sum_probs=41.2
Q ss_pred hhHHHHHHHHhhhhhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHh
Q 017690 269 KDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELVSFFN 318 (367)
Q Consensus 269 ~d~~~lk~kL~~leskL~ea~~~i~kl~ee~r~~~~erd~l~~e~~~l~~ 318 (367)
+.+..+..++..|..+|...+.....|.+..+...+|+..|+..|..=+-
T Consensus 13 ~E~~~~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~~E~~ 62 (129)
T 2fxo_A 13 KEMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQD 62 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56667777888888899999999999999999999999998887765443
No 58
>1a92_A Delta antigen; leucine zipper, coiled-coil, oligomerization; 1.80A {Hepatitis delta virus} SCOP: h.4.6.1 PDB: 1by0_A
Probab=46.27 E-value=18 Score=26.36 Aligned_cols=27 Identities=30% Similarity=0.432 Sum_probs=23.6
Q ss_pred HHHHHHhhhhhhhhhhhHHHHHHHHHh
Q 017690 273 ELKLKLNVMDSQLREAEHTIRKLMEAR 299 (367)
Q Consensus 273 ~lk~kL~~leskL~ea~~~i~kl~ee~ 299 (367)
+-.-|+..||-.|+.+.+.|.||-+|.
T Consensus 11 ~~Rkk~eeler~lrk~kk~iKklEdeN 37 (50)
T 1a92_A 11 SGRKKLEELERDLRKLKKKIKKLEEDN 37 (50)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccC
Confidence 456788999999999999999998874
No 59
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=46.14 E-value=72 Score=22.74 Aligned_cols=44 Identities=23% Similarity=0.240 Sum_probs=25.1
Q ss_pred HHhhHHHHHHHHhhhhhhhhhhhHHHHHHHHHhhhhhHHHHHHH
Q 017690 267 LAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLK 310 (367)
Q Consensus 267 ~~~d~~~lk~kL~~leskL~ea~~~i~kl~ee~r~~~~erd~l~ 310 (367)
+..++.+++.+.+...+.++++..-+.++.++=....-+=.+++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k 53 (60)
T 3htk_A 10 LENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKK 53 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666666666666666666666666555444443333333
No 60
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=45.92 E-value=47 Score=26.41 Aligned_cols=17 Identities=18% Similarity=0.366 Sum_probs=8.8
Q ss_pred HhhhhhhhhhhhHHHHH
Q 017690 278 LNVMDSQLREAEHTIRK 294 (367)
Q Consensus 278 L~~leskL~ea~~~i~k 294 (367)
|+.||.|...|=-+|.-
T Consensus 8 leqLE~KIq~avdtI~l 24 (81)
T 2jee_A 8 FEKLEAKVQQAIDTITL 24 (81)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34455555555555544
No 61
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=44.05 E-value=59 Score=25.92 Aligned_cols=48 Identities=13% Similarity=0.104 Sum_probs=36.5
Q ss_pred HHHHHHHhhhhhhhhhhhHHHHHHHHHhhhh---hHHHHHHHHHHHHHHhh
Q 017690 272 EELKLKLNVMDSQLREAEHTIRKLMEARKLA---TREKDMLKHELVSFFNY 319 (367)
Q Consensus 272 ~~lk~kL~~leskL~ea~~~i~kl~ee~r~~---~~erd~l~~e~~~l~~~ 319 (367)
++=|..+...|..|+||+.+|..+.-|-|.. ...|.+++.=+-..|+.
T Consensus 30 e~Rk~~i~~ie~~ldEA~ell~qMelE~~~~~~p~~~R~~~~~klr~Yk~d 80 (97)
T 3onj_A 30 SQRNTTLKHVEQQQDELFDLLDQMDVEVNNSIGDASERATYKAKLREWKKT 80 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence 4567888899999999999999999998876 35788777444444333
No 62
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=41.51 E-value=28 Score=32.96 Aligned_cols=40 Identities=20% Similarity=0.208 Sum_probs=27.3
Q ss_pred hhhhhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHh
Q 017690 279 NVMDSQLREAEHTIRKLMEARKLATREKDMLKHELVSFFN 318 (367)
Q Consensus 279 ~~leskL~ea~~~i~kl~ee~r~~~~erd~l~~e~~~l~~ 318 (367)
..|+.+++.......+|.++.+..-+|=.+||.|+..|+.
T Consensus 57 ~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~s 96 (251)
T 3m9b_A 57 HQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLGQ 96 (251)
T ss_dssp HHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3344444444445567777778888888888888888764
No 63
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=41.16 E-value=66 Score=32.01 Aligned_cols=15 Identities=13% Similarity=-0.044 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHhhhh
Q 017690 307 DMLKHELVSFFNYIL 321 (367)
Q Consensus 307 d~l~~e~~~l~~~~~ 321 (367)
..|+||+..++.+++
T Consensus 561 ~~l~~e~~~~~~~~~ 575 (597)
T 3oja_B 561 AELRQETSLKRQKVK 575 (597)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344555555555544
No 64
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=39.36 E-value=42 Score=25.78 Aligned_cols=20 Identities=10% Similarity=0.165 Sum_probs=9.3
Q ss_pred HHhhhhhhhhhhhHHHHHHH
Q 017690 277 KLNVMDSQLREAEHTIRKLM 296 (367)
Q Consensus 277 kL~~leskL~ea~~~i~kl~ 296 (367)
.+..||.++.+.+.....|.
T Consensus 30 ~i~~LE~~v~~le~~~~~l~ 49 (70)
T 1gd2_E 30 HLKALETQVVTLKELHSSTT 49 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34445555555444444443
No 65
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=37.84 E-value=37 Score=27.45 Aligned_cols=38 Identities=13% Similarity=0.213 Sum_probs=28.3
Q ss_pred hhhhhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 017690 279 NVMDSQLREAEHTIRKLMEARKLATREKDMLKHELVSF 316 (367)
Q Consensus 279 ~~leskL~ea~~~i~kl~ee~r~~~~erd~l~~e~~~l 316 (367)
.+||....+-..-+.+|++|.....+|+|.+|+-..-|
T Consensus 51 ~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k~~~L 88 (90)
T 2wt7_B 51 HHLENEKTQLIQQVEQLKQEVSRLARERDAYKVKSEKL 88 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555555556677888889888999999998877654
No 66
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=37.57 E-value=92 Score=30.97 Aligned_cols=32 Identities=3% Similarity=-0.008 Sum_probs=14.9
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhh
Q 017690 290 HTIRKLMEARKLATREKDMLKHELVSFFNYIL 321 (367)
Q Consensus 290 ~~i~kl~ee~r~~~~erd~l~~e~~~l~~~~~ 321 (367)
+.|.+-++......||-+.+++|+..|-.++.
T Consensus 551 ~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~~ 582 (597)
T 3oja_B 551 KQLDNKRAKQAELRQETSLKRQKVKQLEAKKN 582 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33333333334444555555555555555543
No 67
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=36.64 E-value=1.4e+02 Score=22.81 Aligned_cols=35 Identities=17% Similarity=0.134 Sum_probs=22.5
Q ss_pred HHhhHHHHHHHHhhhhhhhhhhhHHHHHHHHHhhh
Q 017690 267 LAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKL 301 (367)
Q Consensus 267 ~~~d~~~lk~kL~~leskL~ea~~~i~kl~ee~r~ 301 (367)
+-.|.++...+++.++.+|++++....++-+|-+.
T Consensus 11 lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~ 45 (81)
T 1ic2_A 11 LKLDKENALDRAEQAEADKKAAEERSKQLEDELVA 45 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 44566677777777777777776666666555443
No 68
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=36.24 E-value=1.8e+02 Score=23.86 Aligned_cols=56 Identities=14% Similarity=0.187 Sum_probs=34.1
Q ss_pred HHhhHHHHHHHHhhhhhhhhh----hhH-----HHH-----HHHHHhhhhhHHHHHHHHHHHHHHhhhhh
Q 017690 267 LAKDFEELKLKLNVMDSQLRE----AEH-----TIR-----KLMEARKLATREKDMLKHELVSFFNYILS 322 (367)
Q Consensus 267 ~~~d~~~lk~kL~~leskL~e----a~~-----~i~-----kl~ee~r~~~~erd~l~~e~~~l~~~~~~ 322 (367)
|..+-+.|..+.+.||++|+- .+- -|. =..+.....-++-++||.|++-||.++.+
T Consensus 24 Le~E~~rLr~~~~~LE~~Le~~~l~Gd~~~~~TKVlH~~~NPa~~a~~~~~~~~e~Lq~E~erLr~~v~~ 93 (100)
T 1go4_E 24 LEGERSRLEEEKRMLEAQLERRALQGDYDQSRTKVLHMSLNPTSVARQRLREDHSQLQAECERLRGLLRA 93 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSCCSCCCTTTEEEEEESSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccCCccCeeeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666667777776655 110 000 01233334457888999999999998865
No 69
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=35.92 E-value=61 Score=32.22 Aligned_cols=54 Identities=11% Similarity=0.131 Sum_probs=44.3
Q ss_pred HHhhHHHHHHHHhhhhhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhh
Q 017690 267 LAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELVSFFNYI 320 (367)
Q Consensus 267 ~~~d~~~lk~kL~~leskL~ea~~~i~kl~ee~r~~~~erd~l~~e~~~l~~~~ 320 (367)
|-+.+.+|+.++..++.+.++....+..++|.-.....+|.+|.-++..|+-.|
T Consensus 8 l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l~gnI 61 (412)
T 3u06_A 8 LSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLRDNI 61 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCE
Confidence 557788888888888888888888888888888788888999999998887655
No 70
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=34.89 E-value=1.2e+02 Score=23.56 Aligned_cols=57 Identities=19% Similarity=0.230 Sum_probs=33.7
Q ss_pred hHHHHHHHHhhhhhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhc--cchhhh
Q 017690 270 DFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELVSFFNYILSC--HYDCLL 329 (367)
Q Consensus 270 d~~~lk~kL~~leskL~ea~~~i~kl~ee~r~~~~erd~l~~e~~~l~~~~~~~--~~~~~~ 329 (367)
+++.|++.-..||..|.+++.--..-.+.-...+ ..|..|+..+|..+..+ .|.+|+
T Consensus 2 el~~l~~~~~sLE~~l~e~e~~~~~~~~~~q~~i---~~lE~eL~~~r~e~~~q~~EYq~Ll 60 (84)
T 1gk4_A 2 EVDALKGTNESLERQMREMEENFAVEAANYQDTI---GRLQDEIQNMKEEMARHLREYQDLL 60 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677888888888888887766543333222222 33556666666666543 355543
No 71
>3n7n_E Monopolin complex subunit LRS4; meiosis, rDNA, replication; 3.90A {Saccharomyces cerevisiae}
Probab=33.27 E-value=9 Score=31.45 Aligned_cols=34 Identities=18% Similarity=0.131 Sum_probs=0.0
Q ss_pred HHHhHHhhHHHHHH-----------HHhhhhhhhhhhhHHHHHHH
Q 017690 263 LELKLAKDFEELKL-----------KLNVMDSQLREAEHTIRKLM 296 (367)
Q Consensus 263 ~~~~~~~d~~~lk~-----------kL~~leskL~ea~~~i~kl~ 296 (367)
|..+|+.|+|.++- --+-|||||+-+.++|..|+
T Consensus 51 Qv~qLt~~lQ~~~~Ene~Lke~qKtqkal~ESKL~~~kk~ie~l~ 95 (95)
T 3n7n_E 51 QIAQLNKQLQLSFQENEKLLSVQKNQKALYQSKLSSKDAFIDDLK 95 (95)
T ss_dssp ---------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 44668888887754 34568999999999998773
No 72
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=33.09 E-value=2.1e+02 Score=23.69 Aligned_cols=57 Identities=12% Similarity=0.135 Sum_probs=28.4
Q ss_pred HHhhHHHHHHHHhhhhhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhc
Q 017690 267 LAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELVSFFNYILSC 323 (367)
Q Consensus 267 ~~~d~~~lk~kL~~leskL~ea~~~i~kl~ee~r~~~~erd~l~~e~~~l~~~~~~~ 323 (367)
++=-|+=||-+|..+|--+-+..+--.-..-+-....+.-+.|++++..|+-.|.-|
T Consensus 28 l~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L~qR 84 (103)
T 4h22_A 28 FMYQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEALKQR 84 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666655544433333222223333344455666666666555443
No 73
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=32.85 E-value=69 Score=25.55 Aligned_cols=36 Identities=19% Similarity=0.296 Sum_probs=23.6
Q ss_pred HhHHhhHHHHHHHHhhhhhhhhhhhHHHHHHHHHhh
Q 017690 265 LKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARK 300 (367)
Q Consensus 265 ~~~~~d~~~lk~kL~~leskL~ea~~~i~kl~ee~r 300 (367)
.++..+..++.+||...|++-++-..-|.+|+++-+
T Consensus 34 s~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~e 69 (81)
T 1wt6_A 34 EAIRTDNQNFASQLREAEARNRDLEAHVRQLQERME 69 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566667777777777776666666666666543
No 74
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=32.68 E-value=1e+02 Score=34.39 Aligned_cols=58 Identities=16% Similarity=0.176 Sum_probs=29.1
Q ss_pred hHHhhHHHHHHHHhhhhhhhhhhhHHHHHHHHHh----hhhhHHHHHHHHHHHHHHhhhhhc
Q 017690 266 KLAKDFEELKLKLNVMDSQLREAEHTIRKLMEAR----KLATREKDMLKHELVSFFNYILSC 323 (367)
Q Consensus 266 ~~~~d~~~lk~kL~~leskL~ea~~~i~kl~ee~----r~~~~erd~l~~e~~~l~~~~~~~ 323 (367)
.+.+++++|+..+..+...+++.+..+.++.++- ..-..|..+|+|++..|...+..+
T Consensus 988 ~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L~~kv~~L~~e~~~L~qq~~~l~~~~~~~ 1049 (1080)
T 2dfs_A 988 SLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQ 1049 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666666555555554455555554444322 223345555555555555444444
No 75
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=31.75 E-value=1.6e+02 Score=25.91 Aligned_cols=45 Identities=27% Similarity=0.419 Sum_probs=29.0
Q ss_pred HHHHHhhhhhhhhhhhHHHHHHH-------HHhhhhhHHHHHHHHHHHHHHh
Q 017690 274 LKLKLNVMDSQLREAEHTIRKLM-------EARKLATREKDMLKHELVSFFN 318 (367)
Q Consensus 274 lk~kL~~leskL~ea~~~i~kl~-------ee~r~~~~erd~l~~e~~~l~~ 318 (367)
++.+++.+++.+...+..+.+|+ .-|+.+-+++..+.+||+.|.-
T Consensus 42 ~r~~~~~l~~~~~~~~~e~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEeLTa 93 (154)
T 2ocy_A 42 LKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTA 93 (154)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555553 2355667899999999998864
No 76
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=31.29 E-value=1.8e+02 Score=24.01 Aligned_cols=56 Identities=7% Similarity=0.023 Sum_probs=33.9
Q ss_pred HhHHhhHHHHHHHHhhhhhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhc
Q 017690 265 LKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELVSFFNYILSC 323 (367)
Q Consensus 265 ~~~~~d~~~lk~kL~~leskL~ea~~~i~kl~ee~r~~~~erd~l~~e~~~l~~~~~~~ 323 (367)
..|.-+++.|++.-..||..|.+++.--..-.+.-+..+ ..|..||..+|..+..+
T Consensus 48 q~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l~~~q~~i---~~lE~eL~~~r~em~~q 103 (131)
T 3tnu_A 48 QNLEIELQSQLSMKASLENSLEETKGRYCMQLAQIQEMI---GSVEEQLAQLRCEMEQQ 103 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 446777777777777778888777764333222222222 34666777777766654
No 77
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=30.45 E-value=37 Score=21.65 Aligned_cols=20 Identities=25% Similarity=0.295 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHhhhhhc
Q 017690 304 REKDMLKHELVSFFNYILSC 323 (367)
Q Consensus 304 ~erd~l~~e~~~l~~~~~~~ 323 (367)
-|.|-|.|-+.-|+.||+|-
T Consensus 7 fendaleqkiaalkqkiasl 26 (28)
T 3ra3_A 7 FENDALEQKIAALKQKIASL 26 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHHHh
Confidence 37788999999999999873
No 78
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=30.43 E-value=81 Score=31.14 Aligned_cols=48 Identities=15% Similarity=0.191 Sum_probs=33.5
Q ss_pred hhHHHHHHHHhhhhhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhh
Q 017690 269 KDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELVSFFNYI 320 (367)
Q Consensus 269 ~d~~~lk~kL~~leskL~ea~~~i~kl~ee~r~~~~erd~l~~e~~~l~~~~ 320 (367)
.++++|+.++.+|+.+.++-+..|.++.++.+... ++|.+|- .+||+.
T Consensus 3 ~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~---~~~~~~~-~~rr~l 50 (403)
T 4etp_A 3 SKIAALKEKIAALKEKIAALKEKIKDTELGMKELN---EILIKEE-TVRRTL 50 (403)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH-HHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH-HHHHHH
Confidence 46788999999999999999999988888766543 3344443 345554
No 79
>3cl3_D NF-kappa-B essential modulator; death effector domain, coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia; 3.20A {Homo sapiens}
Probab=30.29 E-value=10 Score=32.77 Aligned_cols=44 Identities=18% Similarity=0.152 Sum_probs=0.9
Q ss_pred HHHhhhhhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhh
Q 017690 276 LKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELVSFFNY 319 (367)
Q Consensus 276 ~kL~~leskL~ea~~~i~kl~ee~r~~~~erd~l~~e~~~l~~~ 319 (367)
..|+.-.+||++|+.+-.+|-+.-|+..+.-..+..||+.+++.
T Consensus 9 ~ELqEsqskL~~Ae~~k~~Leek~~~~e~~~~~~~~Elee~kqq 52 (130)
T 3cl3_D 9 GELQESQSRLEAATKECQALEGRARAASEQARQLESEREALQQQ 52 (130)
T ss_dssp ------------------------------------------CT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 34566677888888888888887777777766776676665553
No 80
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=30.13 E-value=2e+02 Score=23.68 Aligned_cols=55 Identities=11% Similarity=0.131 Sum_probs=29.2
Q ss_pred hHHhhHHHHHHHHhhhhhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhc
Q 017690 266 KLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELVSFFNYILSC 323 (367)
Q Consensus 266 ~~~~d~~~lk~kL~~leskL~ea~~~i~kl~ee~r~~~~erd~l~~e~~~l~~~~~~~ 323 (367)
.|.-+++.|++.-..||..|.+++.--..-.+.-+..+ ..|..||..+|..+..+
T Consensus 47 ~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~~~q~~i---~~lE~eL~~~r~e~~~q 101 (129)
T 3tnu_B 47 RLRAEIDNVKKQCANLQNAIADAEQRGELALKDARNKL---AELEEALQKAKQDMARL 101 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhHHHHHHHHHHH
Confidence 35566666666666666666666653322222222222 34566666666666553
No 81
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=29.63 E-value=1.2e+02 Score=33.87 Aligned_cols=34 Identities=15% Similarity=0.139 Sum_probs=16.6
Q ss_pred hhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 017690 284 QLREAEHTIRKLMEARKLATREKDMLKHELVSFF 317 (367)
Q Consensus 284 kL~ea~~~i~kl~ee~r~~~~erd~l~~e~~~l~ 317 (367)
++++.+..|.+|+++-..+..|++.|++....++
T Consensus 985 ~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~ 1018 (1080)
T 2dfs_A 985 RVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYK 1018 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455555555555555555555444333
No 82
>2d4x_A Flagellar HOOK-associated protein 3; multi-domain protein, alpha-helical bundle, complex all- beta folds, structural protein; 1.90A {Salmonella typhimurium}
Probab=29.25 E-value=1.7e+02 Score=26.18 Aligned_cols=59 Identities=15% Similarity=0.171 Sum_probs=48.7
Q ss_pred HHhHHhhHHHHHHHHhhhhhhhhhhhHHHHHHHHHhh------hhhHHHHHHHHHHHHHHhhhhh
Q 017690 264 ELKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARK------LATREKDMLKHELVSFFNYILS 322 (367)
Q Consensus 264 ~~~~~~d~~~lk~kL~~leskL~ea~~~i~kl~ee~r------~~~~erd~l~~e~~~l~~~~~~ 322 (367)
+....+-.+.-.+.|+..|.-|.+...++.++||--= .+..+|..+++|+..|+..|.+
T Consensus 21 l~q~~~n~~~~~s~l~~ae~aL~~i~~~l~r~rel~vqa~ngt~s~~dr~~i~~e~~~l~~~i~~ 85 (248)
T 2d4x_A 21 NSQYALARTFATQKVSLEESVLSQVTTAIQTAQEKIVYAGNGTLSDDDRASLATDLQGIRDQLMN 85 (248)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 3445677888999999999999999999999998643 2357899999999999987743
No 83
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=29.18 E-value=2.4e+02 Score=23.15 Aligned_cols=54 Identities=26% Similarity=0.233 Sum_probs=33.2
Q ss_pred HhHHhhHHHHHHHHhhhhhhhhhhhHHHHHHHHHhhhhhHH-------HHHHHHHHHHHHh
Q 017690 265 LKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATRE-------KDMLKHELVSFFN 318 (367)
Q Consensus 265 ~~~~~d~~~lk~kL~~leskL~ea~~~i~kl~ee~r~~~~e-------rd~l~~e~~~l~~ 318 (367)
.++-.+++.+|.|..+--.+-..+|.-|..|+-.-=.++-- -+.|+.|+.|||+
T Consensus 44 dn~~~~~edfk~KyE~E~~~r~~~E~di~~lrK~lD~~~l~r~dLE~~iesL~eEl~FLKk 104 (119)
T 3ol1_A 44 DNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKK 104 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666677777665556667777777777544333332 3556677777664
No 84
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=28.66 E-value=80 Score=29.00 Aligned_cols=43 Identities=21% Similarity=0.389 Sum_probs=29.4
Q ss_pred HhhHHHHHHHHhhhhhhhhhhhHHHHHHHHH----hhhhhHHHHHHH
Q 017690 268 AKDFEELKLKLNVMDSQLREAEHTIRKLMEA----RKLATREKDMLK 310 (367)
Q Consensus 268 ~~d~~~lk~kL~~leskL~ea~~~i~kl~ee----~r~~~~erd~l~ 310 (367)
+.+++.|+.+|..|+.++.+......++.-| ||++.+||+.+.
T Consensus 58 ~~e~~~l~~~l~~l~~e~~el~d~~lR~~AEfeN~RkR~~rE~e~~~ 104 (213)
T 4ani_A 58 AEELAAAKAQIAELEAKLSEMEHRYLRLYADFENFRRRTRQEMEAAE 104 (213)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777888888888877777766666655 566666665543
No 85
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=28.48 E-value=1.3e+02 Score=30.14 Aligned_cols=56 Identities=13% Similarity=0.205 Sum_probs=42.6
Q ss_pred HHhhHHHHHHHHhhhhhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhh
Q 017690 267 LAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELVSFFNYILS 322 (367)
Q Consensus 267 ~~~d~~~lk~kL~~leskL~ea~~~i~kl~ee~r~~~~erd~l~~e~~~l~~~~~~ 322 (367)
++++..+|..++..+|..+..++..|..|++--...-..=+.|++.+..|..+...
T Consensus 82 ~tq~skkml~~~~~~e~~~~~~~~~i~~l~~~~~~~~~~i~~l~~~i~~l~~~~~~ 137 (409)
T 1m1j_C 82 LTQKSKKIIEEIIRYENTILAHENTIQQLTDMHIMNSNKITQLKQKIAQLESHCQE 137 (409)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCS
T ss_pred HHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhc
Confidence 58899999999999999999999999888875554444445677777777665443
No 86
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=28.07 E-value=1e+02 Score=22.44 Aligned_cols=37 Identities=8% Similarity=0.032 Sum_probs=27.8
Q ss_pred HHHhHHhhHHHHHHHHhhhhhhhhhhhHHHHHHHHHh
Q 017690 263 LELKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEAR 299 (367)
Q Consensus 263 ~~~~~~~d~~~lk~kL~~leskL~ea~~~i~kl~ee~ 299 (367)
...+|..||+.|..|.+.|.+....+..-|..-.+|-
T Consensus 5 ki~~Lss~V~~L~~kVdqLssdV~al~~~v~~ak~eA 41 (52)
T 1jcd_A 5 KADQASSDAQTANAKADQASNDANAARSDAQAAKDDA 41 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456889999999999999997777666666555443
No 87
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=28.04 E-value=94 Score=29.64 Aligned_cols=48 Identities=15% Similarity=0.137 Sum_probs=30.7
Q ss_pred hhHHHHHHHHhhhhhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhh
Q 017690 269 KDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELVSFFNY 319 (367)
Q Consensus 269 ~d~~~lk~kL~~leskL~ea~~~i~kl~ee~r~~~~erd~l~~e~~~l~~~ 319 (367)
.++++|..+...|+.++++-++.+.+++.. +.+.++.|++.+.+++++
T Consensus 185 ~eie~L~~~~~~L~eEi~~Le~~~e~~~k~---n~~rl~~Lqk~~~~~~~~ 232 (315)
T 2ve7_A 185 FKLESLEAKNRALNEQIARLEQERSTANKA---NAERLKRLQKSADLYKDR 232 (315)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHTTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhh---hHHHHHHHHHHHHHHHHH
Confidence 367777777777777777777766666553 233356677776665543
No 88
>2lem_A Apolipoprotein A-I; lipid transport; NMR {Mus musculus}
Probab=27.91 E-value=98 Score=27.72 Aligned_cols=43 Identities=7% Similarity=0.037 Sum_probs=26.6
Q ss_pred hhhhhhhhhHHHHHHHHHhhhhh----HH-HHHHHHHHHHHHhhhhhc
Q 017690 281 MDSQLREAEHTIRKLMEARKLAT----RE-KDMLKHELVSFFNYILSC 323 (367)
Q Consensus 281 leskL~ea~~~i~kl~ee~r~~~----~e-rd~l~~e~~~l~~~~~~~ 323 (367)
+..-...+...|....++-|... .+ |.+|+++|+.+|.++...
T Consensus 52 l~~~~~~l~~~l~p~~~e~~~~l~~~~~~lr~~l~kd~ee~r~~l~py 99 (216)
T 2lem_A 52 LGSTVSQLQERLGPLTRDFWDNLEKETDWVRQEMNKDLEEVKQKVQPY 99 (216)
T ss_dssp CCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHhHHHHHHHHHHhccHHHHHHhhhHH
Confidence 33344555566666666655333 22 777888888888887654
No 89
>1io1_A Phase 1 flagellin; beta-folium, structural protein; 2.00A {Salmonella typhimurium} SCOP: e.32.1.1
Probab=27.39 E-value=1.6e+02 Score=28.88 Aligned_cols=58 Identities=12% Similarity=0.151 Sum_probs=48.6
Q ss_pred HhHHhhHHHHHHHHhhhhhhhhhhhHHHHHHHHHhh------hhhHHHHHHHHHHHHHHhhhhh
Q 017690 265 LKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARK------LATREKDMLKHELVSFFNYILS 322 (367)
Q Consensus 265 ~~~~~d~~~lk~kL~~leskL~ea~~~i~kl~ee~r------~~~~erd~l~~e~~~l~~~~~~ 322 (367)
....+-.+.-.+.|...|.-|.+...++.++||-.= .+..+|..+++|+..|+..|..
T Consensus 9 ~q~~~N~~~~~s~lqtae~aL~~i~~~Lqr~relavqaangt~s~~dr~ai~~Ei~~l~~ei~~ 72 (398)
T 1io1_A 9 TQASRNANDGISIAQTTEGALNEINNNLQRVRELAVQSANSTNSQSDLDSIQAEITQRLNEIDR 72 (398)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 445677888899999999999999999999998543 2347899999999999998864
No 90
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=27.15 E-value=1e+02 Score=24.51 Aligned_cols=36 Identities=17% Similarity=0.338 Sum_probs=19.0
Q ss_pred hhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhh
Q 017690 284 QLREAEHTIRKLMEARKLATREKDMLKHELVSFFNY 319 (367)
Q Consensus 284 kL~ea~~~i~kl~ee~r~~~~erd~l~~e~~~l~~~ 319 (367)
.++++.+.|..+.-++-.-.-|+|.|+.++..||.|
T Consensus 57 ~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~k~K 92 (93)
T 3s4r_A 57 EMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREK 92 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344444444445555555555555566666655554
No 91
>3idu_A Uncharacterized protein; all beta-protein, structural genomics, PSI-2, protein structure initiative; 1.70A {Pyrococcus furiosus} PDB: 2kl6_A
Probab=27.08 E-value=1.4e+02 Score=24.88 Aligned_cols=68 Identities=16% Similarity=0.120 Sum_probs=48.2
Q ss_pred CCeeEEEEEEEcCCC-CeEEEEEecCCCCceeecCCceeeCCCCeEEEEEEeccCccCCCCCCCCCeEEEEEEEeCCC
Q 017690 20 KKQSTCVIQLGNKSD-QCVAFKVKTTSPKKYCVRPNVSIIKPKAISDFTVTMQAQRVAPPDLQCKDKFLIQGIVVPFG 96 (367)
Q Consensus 20 ~k~~s~tLtLtN~S~-~~VAFKVKTTaPkrY~VRPn~GvI~Pgesv~I~VtLqp~~~~Ppd~k~kDKFLVQS~~Vp~g 96 (367)
++...-.++++|... ..=+|+|+-...+.+.-.-..+ |.||++.+|.+...+.. ..-+.|...+-+.+
T Consensus 32 G~~~ti~vtV~N~G~~~a~~~~V~lyvng~~v~t~~v~-La~G~s~tv~f~~~~~~--------~G~~~v~AvVD~~n 100 (127)
T 3idu_A 32 NKLAEYEVHVKNLGGIGVPSTKVRVYINGTLYKNWTVS-LGPKEEKVLTFNWTPTQ--------EGMYRINATVDEEN 100 (127)
T ss_dssp TCCEEEEEEEEECSSSCEEEEEEEEEETTEEEEEEEEE-ECTTCEEEEEEEECCSS--------CEEEEEEEEESTTC
T ss_pred CCEEEEEEEEEECCCCccCCcEEEEEECCEEEeeEEec-cCCCCeEEEEEEEEcCC--------CcEEEEEEEEcCCC
Confidence 567788999999986 4468888877666655444444 99999999999886431 23466666665544
No 92
>3v47_C Flagellin; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Salmonella enterica subsp}
Probab=26.81 E-value=96 Score=31.30 Aligned_cols=59 Identities=8% Similarity=0.093 Sum_probs=46.6
Q ss_pred HHhHHhhHHHHHHHHhhhhhhhhhhhHHHHHHHHHhh------hhhHHHHHHHHHHHHHHhhhhh
Q 017690 264 ELKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARK------LATREKDMLKHELVSFFNYILS 322 (367)
Q Consensus 264 ~~~~~~d~~~lk~kL~~leskL~ea~~~i~kl~ee~r------~~~~erd~l~~e~~~l~~~~~~ 322 (367)
+.+..+-++.-.+-|...|.-|.+...++.++||-.= .+..+|..+++|+..|+..|..
T Consensus 20 l~Qa~rN~~dgiS~lqtAEgAL~~i~~iLqRmRELaVQAaNgT~s~~DR~aIq~Ei~qL~~eI~~ 84 (425)
T 3v47_C 20 LTQASRNANDGISIAQTTEGALNEINNNLQRVRELSVQATNGTNSDSDLKSIQDEIQQRLEEIDR 84 (425)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 3445567788899999999999999999999998542 2356899999999999988754
No 93
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=26.49 E-value=2.3e+02 Score=22.11 Aligned_cols=55 Identities=25% Similarity=0.218 Sum_probs=36.1
Q ss_pred HHhHHhhHHHHHHHHhhhhhhhhhhhHHHHHHHHHhhhhhHHHH-------HHHHHHHHHHh
Q 017690 264 ELKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKD-------MLKHELVSFFN 318 (367)
Q Consensus 264 ~~~~~~d~~~lk~kL~~leskL~ea~~~i~kl~ee~r~~~~erd-------~l~~e~~~l~~ 318 (367)
..++..+++.+|.|...=-.+-.+||.-|.-||..-=.++--|- .|+.|+.|||+
T Consensus 23 ~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl~fLkk 84 (86)
T 3swk_A 23 RDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKK 84 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34566777777888776555666788888888876555555444 45566666553
No 94
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=26.13 E-value=2.3e+02 Score=21.94 Aligned_cols=56 Identities=16% Similarity=0.175 Sum_probs=28.6
Q ss_pred HHhhHHHHHHHHhhhhhhhhhhhHHHHHHHHHhhhh-------hHHHHHHHHHHHHHHhhhhh
Q 017690 267 LAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLA-------TREKDMLKHELVSFFNYILS 322 (367)
Q Consensus 267 ~~~d~~~lk~kL~~leskL~ea~~~i~kl~ee~r~~-------~~erd~l~~e~~~l~~~~~~ 322 (367)
++..+|.+..+=..||-+++.++..+..=+.+++.- .+-=|-==+||-.||..++|
T Consensus 5 ~~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~KI~eL~elrq~Lak 67 (72)
T 3cve_A 5 SHMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILDGKIFELTELRDNLAK 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 445556666666666666666655554444333322 22222222466666666665
No 95
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=25.66 E-value=2.9e+02 Score=23.11 Aligned_cols=24 Identities=21% Similarity=0.241 Sum_probs=15.6
Q ss_pred HhhhhhHHHHHHHHHHHHHHhhhh
Q 017690 298 ARKLATREKDMLKHELVSFFNYIL 321 (367)
Q Consensus 298 e~r~~~~erd~l~~e~~~l~~~~~ 321 (367)
+|-..-.|++.|+.++..|++.+.
T Consensus 84 dREkl~~eKe~L~~ql~~Lq~q~~ 107 (110)
T 2v4h_A 84 AREKLVEKKEYLQEQLEQLQREFN 107 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHhHHHHHHHHHHHHHHHHH
Confidence 344455567777777777777654
No 96
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=25.51 E-value=2.4e+02 Score=22.17 Aligned_cols=56 Identities=18% Similarity=0.233 Sum_probs=25.8
Q ss_pred HHhhHHHHHHHHhhhhhhhhhhhHHHHHHHHHhh-------hhhHHHHHHHHHHHHHHhhhhh
Q 017690 267 LAKDFEELKLKLNVMDSQLREAEHTIRKLMEARK-------LATREKDMLKHELVSFFNYILS 322 (367)
Q Consensus 267 ~~~d~~~lk~kL~~leskL~ea~~~i~kl~ee~r-------~~~~erd~l~~e~~~l~~~~~~ 322 (367)
++.-+|.+..+=..||-+++.++..+..=+.+++ .-.+-=|-==+||-.||..++|
T Consensus 11 ~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~KI~eL~elRqgLak 73 (79)
T 3cvf_A 11 TQQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQLLDVSLFELSELREGLAR 73 (79)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 3344555555555555555555544443333322 2222222223466666666665
No 97
>3hn9_A Lamin-B1; structural genomics, structural genomics consortium, SGC, acetylation, chromosomal rearrangement, coiled coil, intermediate filament; 2.00A {Homo sapiens} PDB: 3umn_A 2kpw_A
Probab=24.90 E-value=85 Score=26.13 Aligned_cols=41 Identities=17% Similarity=0.186 Sum_probs=28.3
Q ss_pred EEEEEEcCCCCeEE---EEEecCCCC---ceeecCCceeeCCCCeEEE
Q 017690 25 CVIQLGNKSDQCVA---FKVKTTSPK---KYCVRPNVSIIKPKAISDF 66 (367)
Q Consensus 25 ~tLtLtN~S~~~VA---FKVKTTaPk---rY~VRPn~GvI~Pgesv~I 66 (367)
..++|.|.+++.+. |+++-...+ .|.. |+.=+|.||++++|
T Consensus 25 ~fV~L~N~s~~~~~L~gW~l~r~v~~~~~~y~F-p~~~~L~pg~~vtV 71 (123)
T 3hn9_A 25 KFIRLKNTSEQDQPMGGWEMIRKIGDTSVSYKY-TSRYVLKAGQTVTI 71 (123)
T ss_dssp SEEEEEECSSSCEECTTCEEEEEETTEEEEEEC-CTTCEECTTCEEEE
T ss_pred CEEEEEECCCCceecCCcEEEEEeCCCceEEEc-CCCcEECCCCEEEE
Confidence 37899999876664 677654433 3655 55558999998775
No 98
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=24.01 E-value=1.6e+02 Score=24.79 Aligned_cols=55 Identities=16% Similarity=0.056 Sum_probs=43.7
Q ss_pred HhhHHHHHHHHhhhhhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhh
Q 017690 268 AKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELVSFFNYILS 322 (367)
Q Consensus 268 ~~d~~~lk~kL~~leskL~ea~~~i~kl~ee~r~~~~erd~l~~e~~~l~~~~~~ 322 (367)
+++++-|=..|=.+++-=++-.+.|.+|-+|.+-.-+|+...-.|...|.+++..
T Consensus 70 ~kqIe~LIdsLP~~~~see~Q~~ri~~L~~E~~~~~~el~~~v~e~e~ll~~v~~ 124 (132)
T 1ykh_B 70 TRQINKLIDSLPGVDVSAEEQLRKIDMLQKKLVEVEDEKIEAIKKKEKLMRHVDS 124 (132)
T ss_dssp HHHHHHHHHHSTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5889999999998888777777888888888888888877777777777666643
No 99
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=23.60 E-value=2.2e+02 Score=29.00 Aligned_cols=30 Identities=10% Similarity=0.032 Sum_probs=20.9
Q ss_pred HHHHhHHhhHHHHHHHHhhhhhhhhhhhHH
Q 017690 262 ILELKLAKDFEELKLKLNVMDSQLREAEHT 291 (367)
Q Consensus 262 ~~~~~~~~d~~~lk~kL~~leskL~ea~~~ 291 (367)
.++.+|.+|+|+|+-+|..|+-+-.+|...
T Consensus 93 k~q~~V~~~LqeLe~~l~~lsn~Ts~~~~~ 122 (464)
T 1m1j_B 93 KQEKTVKPVLRDLKDRVAKFSDTSTTMYQY 122 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhhHhHHHHHHHHHHHHhhhhhHHHHH
Confidence 455558888999998888887555554433
No 100
>3pwx_A Putative flagellar HOOK-associated protein; structural genomics, structural protein, PSI-2, protein STRU initiative; 2.50A {Vibrio parahaemolyticus}
Probab=23.11 E-value=1.9e+02 Score=26.23 Aligned_cols=58 Identities=17% Similarity=0.299 Sum_probs=47.9
Q ss_pred HhHHhhHHHHHHHHhhhhhhhhhhhHHHHHHHHHhh------hhhHHHHHHHHHHHHHHhhhhh
Q 017690 265 LKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARK------LATREKDMLKHELVSFFNYILS 322 (367)
Q Consensus 265 ~~~~~d~~~lk~kL~~leskL~ea~~~i~kl~ee~r------~~~~erd~l~~e~~~l~~~~~~ 322 (367)
....+-.+.-.+.|+..|+-|.+...++.++||--= .+..+|..+++|+..|+..|..
T Consensus 24 ~q~~~N~~~a~s~l~~ae~aL~~i~~~l~r~rel~vqa~ngt~s~~dr~ai~~E~~~l~~~i~~ 87 (239)
T 3pwx_A 24 AQYQSNIANLKTTLSSQETHLDSVSESLKSMRDIVLWGANGSLTDQDRSGMITELKSYRDSIES 87 (239)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCTTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 445677888899999999999999999999998643 2356899999999999988754
No 101
>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C
Probab=23.05 E-value=2e+02 Score=25.77 Aligned_cols=51 Identities=18% Similarity=0.297 Sum_probs=34.8
Q ss_pred ccCCch-hHHHHhHH--hhHHHHHHHHhhhhhhhhhhhHHHHHHHHHhhhhhHH
Q 017690 255 ELKPAK-DILELKLA--KDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATRE 305 (367)
Q Consensus 255 ~l~~~~-~~~~~~~~--~d~~~lk~kL~~leskL~ea~~~i~kl~ee~r~~~~e 305 (367)
+|.+-. |.+...++ ..++++...+..+.+.+++....+-+|.+.++.+...
T Consensus 45 ~LL~~~~dlL~~~v~~l~~~q~~~~~~e~l~s~ae~ll~l~~~Le~~r~~l~~~ 98 (192)
T 2p22_C 45 DLIQTHRHQLELYVTKFNPLTDFAGKIHAFRDQFKQLEENFEDLHEQKDKVQAL 98 (192)
T ss_dssp HHHHHCHHHHHHHGGGGSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhChHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 344443 66666565 5578888888888888888888888887765555443
No 102
>3fga_D Shugoshin-like 1; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens}
Probab=22.54 E-value=82 Score=22.72 Aligned_cols=26 Identities=31% Similarity=0.353 Sum_probs=21.3
Q ss_pred HHHHHhhhhhhhhhhhHHHHHHHHHh
Q 017690 274 LKLKLNVMDSQLREAEHTIRKLMEAR 299 (367)
Q Consensus 274 lk~kL~~leskL~ea~~~i~kl~ee~ 299 (367)
|-.-|.+=-+|.|||..+|-.|+-|.
T Consensus 15 LalALe~Ek~Kvr~Aq~~ILqLkrE~ 40 (47)
T 3fga_D 15 LVLALENEKSKVKEAQDIILQLRKEC 40 (47)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55567777789999999999998764
No 103
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=22.32 E-value=1.7e+02 Score=24.47 Aligned_cols=29 Identities=28% Similarity=0.421 Sum_probs=20.5
Q ss_pred hHHHHHHHHhhhhhhhhhhhHHHHHHHHH
Q 017690 270 DFEELKLKLNVMDSQLREAEHTIRKLMEA 298 (367)
Q Consensus 270 d~~~lk~kL~~leskL~ea~~~i~kl~ee 298 (367)
.+.+|+.+|..+|-.|.+-...|-+|+++
T Consensus 25 ei~~L~~~L~~AEeaL~~Kq~~idelk~e 53 (110)
T 2v4h_A 25 QLEDLRQQLQQAEEALVAKQELIDKLKEE 53 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778888887777777766666666654
No 104
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=22.29 E-value=1.6e+02 Score=25.51 Aligned_cols=54 Identities=15% Similarity=0.046 Sum_probs=37.3
Q ss_pred HhhHHHHHHHHhhhhhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhh
Q 017690 268 AKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELVSFFNYIL 321 (367)
Q Consensus 268 ~~d~~~lk~kL~~leskL~ea~~~i~kl~ee~r~~~~erd~l~~e~~~l~~~~~ 321 (367)
+++++-|=..|=.+++-=++-.+.|.+|-+|.+-.-+|+...-.|...|.+++.
T Consensus 70 akqIe~LIdsLPg~~~seeeQ~~ri~~Le~E~~~~~~el~~~v~eae~ll~~v~ 123 (151)
T 1yke_B 70 TRQINKLIDSLPGVDVSAEEQLRKIDMLQKKLVEVEDEKIEAIKKKEKLLRHVD 123 (151)
T ss_dssp HHHHHHHHHHCTTSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 588899988888888766666677777777766666666555555555555543
No 105
>3e38_A Two-domain protein containing predicted PHP-like dependent phosphoesterase; structural genomics; 2.20A {Bacteroides vulgatus atcc 8482}
Probab=22.12 E-value=2.3e+02 Score=27.23 Aligned_cols=64 Identities=16% Similarity=0.178 Sum_probs=49.5
Q ss_pred EEEEEEcCCCCeEEEEEecCCCCceeecCCceeeCCCCeEEEEEEeccCccCCCCCCCCCeEEEEEEEeCC
Q 017690 25 CVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKPKAISDFTVTMQAQRVAPPDLQCKDKFLIQGIVVPF 95 (367)
Q Consensus 25 ~tLtLtN~S~~~VAFKVKTTaPkrY~VRPn~GvI~Pgesv~I~VtLqp~~~~Ppd~k~kDKFLVQS~~Vp~ 95 (367)
-.+.|+|.|+- -|.++-+++..|.+.++.-.|+|+++..+.|.+..... ...=+|-|.-+.+.+
T Consensus 270 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~ 333 (343)
T 3e38_A 270 VTLSITNVTDL--VLKLKKTAHDTLLVYFRDMTLKPHTRYTVRIGFKQGIK-----GGDVNFEVTNFIVAP 333 (343)
T ss_dssp EEEEEEECSSS--CEEEEECSCCTTEECCSEEEECTTEEEEEEEEECTTCC-----CCEEEEEEEEEEEET
T ss_pred eEEEeecCCCc--ceeeeccccccccccCceEEecCCCeEEEEEecccccc-----ceEEEEEeeeeeecC
Confidence 58899999875 56677788999999999999999999999998864332 223467776666644
No 106
>2xzz_A Protein-glutamine gamma-glutamyltransferase K; 2.30A {Homo sapiens}
Probab=22.04 E-value=2.1e+02 Score=22.88 Aligned_cols=56 Identities=16% Similarity=0.167 Sum_probs=40.2
Q ss_pred cCCeeEEEEEEEcCCC---CeEEEEEecCCCCceeecCCceeeCCCCeEEEEEEeccCcc
Q 017690 19 VKKQSTCVIQLGNKSD---QCVAFKVKTTSPKKYCVRPNVSIIKPKAISDFTVTMQAQRV 75 (367)
Q Consensus 19 ~~k~~s~tLtLtN~S~---~~VAFKVKTTaPkrY~VRPn~GvI~Pgesv~I~VtLqp~~~ 75 (367)
.++...+.++++|+-. ....|.|-...-.+-... ..|-|.||+++.+.+.+.|...
T Consensus 18 v~~~l~v~vsf~NPL~~~L~~c~~~vEG~GL~~~~~~-~~~~v~pg~~~~~~~~~~P~~~ 76 (102)
T 2xzz_A 18 VGQECEVQIVFKNPLPVTLTNVVFRLEGSGLQRPKIL-NVGDIGGNETVTLRQSFVPVRP 76 (102)
T ss_dssp SSSCEEEEEEEECCSSSCBCSEEEEEEETTTEEEEEE-EECCBCTTCEEEEEEEECCCSC
T ss_pred cCCeEEEEEEEECCCCCcccCEEEEEECCCCCcceEE-EcCcCCCCCEEEEEEEEecCcc
Confidence 3577899999999976 566888766543222111 1477999999999999987654
No 107
>3t97_C Nuclear pore glycoprotein P62; nucleoporin, coiled-coil, nuclear pore complex, central TRAN channel, alpha helical proteins, triple helix; 2.80A {Rattus norvegicus}
Probab=21.78 E-value=1.4e+02 Score=22.59 Aligned_cols=37 Identities=22% Similarity=0.216 Sum_probs=32.1
Q ss_pred hhhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 017690 281 MDSQLREAEHTIRKLMEARKLATREKDMLKHELVSFF 317 (367)
Q Consensus 281 leskL~ea~~~i~kl~ee~r~~~~erd~l~~e~~~l~ 317 (367)
=|..|-+-...|.+|.++....-++...|-|+|.+..
T Consensus 3 WD~~LveNgekI~~L~~~v~~~e~~Q~~ldq~Ld~Ie 39 (64)
T 3t97_C 3 WDRTLIENGEKITSLHREVEKVKLDQKRLDQELDFIL 39 (64)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567888889999999999999999999999998764
No 108
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=21.53 E-value=2.1e+02 Score=23.97 Aligned_cols=32 Identities=19% Similarity=0.334 Sum_probs=23.2
Q ss_pred hhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 017690 286 REAEHTIRKLMEARKLATREKDMLKHELVSFF 317 (367)
Q Consensus 286 ~ea~~~i~kl~ee~r~~~~erd~l~~e~~~l~ 317 (367)
++....|.+|.+|.+..-+|-+.|++++....
T Consensus 28 ~~l~~~v~~l~~e~k~l~ke~~~l~~~~a~~~ 59 (171)
T 2zvf_A 28 AKLPKTVERFFEEWKDQRKEIERLKSVIADLW 59 (171)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46667788888888777777777777766553
No 109
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=21.50 E-value=2.9e+02 Score=24.29 Aligned_cols=33 Identities=12% Similarity=0.208 Sum_probs=14.6
Q ss_pred HHhhHHHHHHHHhhhhhhhhhhhHHHHHHHHHh
Q 017690 267 LAKDFEELKLKLNVMDSQLREAEHTIRKLMEAR 299 (367)
Q Consensus 267 ~~~d~~~lk~kL~~leskL~ea~~~i~kl~ee~ 299 (367)
|.+....|+.|+..++.-|+|=.+.+.-|+.|-
T Consensus 73 L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl 105 (152)
T 3a7p_A 73 LQKELKSKEQEIRRLKEVIALKNKNTERLNAAL 105 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444443
No 110
>3azd_A Short alpha-tropomyosin, transcription factor GCN; coiled-coil, actin-binding protein, muscle protein; 0.98A {Rattus norvegicus} PDB: 1ihq_A 2k8x_A
Probab=21.38 E-value=42 Score=22.73 Aligned_cols=27 Identities=19% Similarity=0.346 Sum_probs=20.1
Q ss_pred HHHHHHHHhhhhhhhhhhhHHHHHHHH
Q 017690 271 FEELKLKLNVMDSQLREAEHTIRKLME 297 (367)
Q Consensus 271 ~~~lk~kL~~leskL~ea~~~i~kl~e 297 (367)
++.+|.|...|+.++++|+.-+..|..
T Consensus 6 i~avKkKiq~lq~q~d~aee~~~~~~~ 32 (37)
T 3azd_A 6 LEAVRRKIRSLQEQNYHLENEVARLKK 32 (37)
T ss_dssp CHHHHHHHHHHHHHTTTTHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888888888888888777666653
No 111
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=21.37 E-value=2.8e+02 Score=21.27 Aligned_cols=52 Identities=12% Similarity=0.138 Sum_probs=33.6
Q ss_pred HHhhHHHHHHHHhhhhhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHh
Q 017690 267 LAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELVSFFN 318 (367)
Q Consensus 267 ~~~d~~~lk~kL~~leskL~ea~~~i~kl~ee~r~~~~erd~l~~e~~~l~~ 318 (367)
+..+.+++...++.+|+.|.++..-+.....|-..=-.=|-.|-.|+.-.|+
T Consensus 3 l~~e~~~~~~~i~~lE~eL~~~r~e~~~ql~EYq~LlniKl~Le~EIatYRk 54 (74)
T 2xv5_A 3 SARERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRK 54 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788889999999988888776665544444333334455555555443
No 112
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=21.18 E-value=67 Score=21.18 Aligned_cols=21 Identities=24% Similarity=0.341 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHhhhhhccc
Q 017690 305 EKDMLKHELVSFFNYILSCHY 325 (367)
Q Consensus 305 erd~l~~e~~~l~~~~~~~~~ 325 (367)
|-.-||||+.-|++.|+.-.+
T Consensus 3 eiaalkqeiaalkkeiaalkf 23 (33)
T 4dzn_A 3 EIAALKQEIAALKKEIAALKF 23 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 344678888888887775444
No 113
>3k8w_A Flagellin homolog; flagellum, structural protein, bacterial flagellu; 1.70A {Sphingomonas SP} PDB: 2zbi_A 3k8v_A
Probab=21.12 E-value=2.7e+02 Score=27.15 Aligned_cols=59 Identities=12% Similarity=0.149 Sum_probs=48.7
Q ss_pred HHhHHhhHHHHHHHHhhhhhhhhhhhHHHHHHHHHhh------hhhHHHHHHHHHHHHHHhhhhh
Q 017690 264 ELKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARK------LATREKDMLKHELVSFFNYILS 322 (367)
Q Consensus 264 ~~~~~~d~~~lk~kL~~leskL~ea~~~i~kl~ee~r------~~~~erd~l~~e~~~l~~~~~~ 322 (367)
+....+-.+.-.+.|+..|.-|.+...++.++||--- .+..+|..+++|+..|+..|..
T Consensus 41 l~Q~~rN~~da~S~LqtAE~AL~~i~diLqrmRELaVQAaNgT~s~~DR~aIa~Ei~qL~~eI~~ 105 (326)
T 3k8w_A 41 LTQAQRNANDGISLAQTAEGALGEISNNLQRIRELAVQASNGTNTQTDRDALQAEVTQLQSEIQR 105 (326)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 3445677888899999999999999999999998653 2357899999999999988754
No 114
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=20.56 E-value=2.1e+02 Score=22.38 Aligned_cols=43 Identities=19% Similarity=0.225 Sum_probs=24.8
Q ss_pred hHHHHHHHHhhhhhhhhhhhHHHHHHHHHhhhhhHHHHHHHHH
Q 017690 270 DFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHE 312 (367)
Q Consensus 270 d~~~lk~kL~~leskL~ea~~~i~kl~ee~r~~~~erd~l~~e 312 (367)
-+..++.++..|..+|...+.....|.+....-.+|+..|+..
T Consensus 15 Em~~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~q 57 (89)
T 3bas_A 15 EMKEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGS 57 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555556666566666666666544
No 115
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=20.38 E-value=2.2e+02 Score=29.17 Aligned_cols=37 Identities=11% Similarity=0.085 Sum_probs=30.6
Q ss_pred hHHHHhHHhhHHHHHHHHhhhhhhhhhhhHHHHHHHH
Q 017690 261 DILELKLAKDFEELKLKLNVMDSQLREAEHTIRKLME 297 (367)
Q Consensus 261 ~~~~~~~~~d~~~lk~kL~~leskL~ea~~~i~kl~e 297 (367)
.-|+..|-+|+|+|+-.|..++-+=.+|...|..|+.
T Consensus 87 ~kye~~V~~dl~~Le~~l~~isn~Ts~a~~~v~~ik~ 123 (461)
T 3ghg_B 87 LQQERPIRNSVDELNNNVEAVSQTSSSSFQYMYLLKD 123 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HhcccchhhHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3567779999999999999999888888877776655
No 116
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=20.15 E-value=2.8e+02 Score=25.05 Aligned_cols=42 Identities=21% Similarity=0.191 Sum_probs=19.2
Q ss_pred HHhhHHHHHHHHhhhhhhhhhhhHHHHHHHHHhhhhhHHHHHHHH
Q 017690 267 LAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKH 311 (367)
Q Consensus 267 ~~~d~~~lk~kL~~leskL~ea~~~i~kl~ee~r~~~~erd~l~~ 311 (367)
+..+++.+|.|+...- .|+.+.|.+|..+-.....+++.|+.
T Consensus 68 L~~E~e~~k~K~~~~~---~e~~~~~~~Lq~el~~l~~~~~~l~~ 109 (189)
T 2v71_A 68 LKYEVEALKEKLEHQY---AQSYKQVSVLEDDLSQTRAIKEQLHK 109 (189)
T ss_dssp HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555543332 23444455555554444444444443
No 117
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=20.05 E-value=1.8e+02 Score=24.38 Aligned_cols=39 Identities=18% Similarity=0.258 Sum_probs=28.5
Q ss_pred hhHHHHHHHHhhhhhhhhhhhHHHHHHHHHhhhhhHHHH
Q 017690 269 KDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKD 307 (367)
Q Consensus 269 ~d~~~lk~kL~~leskL~ea~~~i~kl~ee~r~~~~erd 307 (367)
.=+..|+.++|.||+.|.+..++..+...|...=-.|.+
T Consensus 40 ~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~ 78 (120)
T 3i00_A 40 RVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELD 78 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346679999999999999999887776666544434444
Done!