Citrus Sinensis ID: 017692

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------
MGVSEASSINERFEELKAFDESKAGVKGLVDAGITKVPGIFICSSEELDRDRQNSNEPTRTHFRIPVVDLKEVRFQRAEAVSGVLKAAEEVGFFQVINHGVATEVLVGMLEAARGFHELPVEVKEEYYSREVNRKVKYGSNFDLYESSSANWRDTLFCVMGPEPLDPQELPFVCRDITLEYSRQVHKLGTLLFELISEALGLKPDYLLNMECAKGHCLLSNYYPACPQPELTMGTTKHSDPDFLTILLQDHMGGLQVFHQNQWIDVPPLSGAFVVNIGDLLQLISNDKLKSVEHRVLANHIGPRVSVACFFTPHLYPSMKTYGPIKELLSEENPPLYRETSVQDFIAYYESKGLDGNSALTHFKLRR
cccccccccHHHHHHHHHHccccccHHHHHHcccccccccccccccccccccccccccccccccccEEEccccccccHHHHHHHHHHHHHccEEEEEcccccHHHHHHHHHHHHHHccccHHHHHHHccccccccEEEEcccccccccccccEEEEEccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHccccEEEEEEEccccccccccccccccccccccEEEEccccccEEEEEccEEEEcccccccEEEEcccEEEEEEcccccccccEEEEcccccEEEEEEEEcccccccccEEcccccccccccccccccccHHHHHHHHHHcccccccccccccccc
ccccccccccccHHHHHHccccHHcHHHHHHcccccccccEEccccccccccccccccccccccEEEEEcccccccHHHHHHHHHHHHHHcccEEEEcccccHHHHHHHHHHHHHHHcccHHHHHHHHccccccEEEEEccccEcccccccHHHHEEEEccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHccccccEEEEEEEcccccccccccEEEEcccccEEEEEEcccccEEEEEccEEEEcccccccEEEEEcHHHHHHcccccccccEEEcccccccEEEEEEEEEccccccccccccHHHHcccccccccccccHHHHHHHHHHcccccccccHHcEccc
MGVSEASSINERFEELkafdeskagvkglvdagitkvpgificsseeldrdrqnsneptrthfripvvdlkeVRFQRAEAVSGVLKAAEEVGFFQVINHGVATEVLVGMLEAArgfhelpvevkeeyYSREvnrkvkygsnfdlyesssanwrDTLFcvmgpepldpqelpfvcrDITLEYSRQVHKLGTLLFELISEalglkpdyllnmecakghcllsnyypacpqpeltmgttkhsdpDFLTILLQDHmgglqvfhqnqwidvpplsgafVVNIGDLLQLISNDKLKSVEHRVLAnhigprvsvacfftphlypsmktygpikellseenpplyretSVQDFIAYYESkgldgnsalthfklrr
mgvseassINERFEElkafdeskagvkglvdagitkvpgificsseeldrdrqnsneptrthfripvvdlkevRFQRAEAVSGVLKAAEEVGFFQVINHGVATEVLVGMLEAARgfhelpvevkeeyysrevnrkvkygsnfdLYESSSANWRDTLFCVMGPEPLDPQELPFVCRDITLEYSRQVHKLGTLLFELISEALGLKPDYLLNMECAKGHCLLSNYYPACPQPELTMGTTKHSDPDFLTILLQDHMGGLQVFHQNQWIDVPPLSGAFVVNIGDLLQLISNDKLKSVEHRVLANHIGPRVSVACFFTPHLYPSMKTYGPIKELLSEENPPLYRETSVQDFIAYYESkgldgnsalthfklrr
MGVSEASSINERFEELKAFDESKAGVKGLVDAGITKVPGIFICSSEELDRDRQNSNEPTRTHFRIPVVDLKEVRFQRAEAVSGVLKAAEEVGFFQVINHGVATEVLVGMLEAARGFHELPVEVKEEYYSREVNRKVKYGSNFDLYESSSANWRDTLFCVMGPEPLDPQELPFVCRDITLEYSRQVHKLGTLLFELISEALGLKPDYLLNMECAKGHCLLSNYYPACPQPELTMGTTKHSDPDFLTILLQDHMGGLQVFHQNQWIDVPPLSGAFVVNIGDLLQLISNDKLKSVEHRVLANHIGPRVSVACFFTPHLYPSMKTYGPIKELLSEENPPLYRETSVQDFIAYYESKGLDGNSALTHFKLRR
***********************AGVKGLVDAGITKVPGIFICS*****************HFRIPVVDLKEVRFQRAEAVSGVLKAAEEVGFFQVINHGVATEVLVGMLEAARGFHELPVEVKEEYYSREVNRKVKYGSNFDLYESSSANWRDTLFCVMGPEPLDPQELPFVCRDITLEYSRQVHKLGTLLFELISEALGLKPDYLLNMECAKGHCLLSNYYPACPQPELTMGTTKHSDPDFLTILLQDHMGGLQVFHQNQWIDVPPLSGAFVVNIGDLLQLISNDKLKSVEHRVLANHIGPRVSVACFFTPHLYPSMKTYGPIKELLSEENPPLYRETSVQDFIAYYESKGL*************
******************FDESKAGVKGLVDAGITKVPGIFICSSEE************RTHFRIPVVDLKEVRFQRAEAVSGVLKAAEEVGFFQVINHGVATEVLVGMLEAARGFHELPVEVKEEYYSREVNRKVKYGSNFDLYESSSANWRDTLFCVMGPEPLDPQELPFVCRDITLEYSRQVHKLGTLLFELISEALGLKPDYLLNMECAKGHCLLSNYYPACPQPELTMGTTKHSDPDFLTILLQDHMGGLQVFHQNQWIDVPPLSGAFVVNIGDLLQLISNDKLKSVEHRVLANHIGPRVSVACFFTPHLYPSMKTYGPIKELLSEENPPLYRETSVQDFIAYYESKGLDGNSALTHFKLR*
*********NERFEELKAFDESKAGVKGLVDAGITKVPGIFICSSEE*********EPTRTHFRIPVVDLKEVRFQRAEAVSGVLKAAEEVGFFQVINHGVATEVLVGMLEAARGFHELPVEVKEEYYSREVNRKVKYGSNFDLYESSSANWRDTLFCVMGPEPLDPQELPFVCRDITLEYSRQVHKLGTLLFELISEALGLKPDYLLNMECAKGHCLLSNYYPACPQPELTMGTTKHSDPDFLTILLQDHMGGLQVFHQNQWIDVPPLSGAFVVNIGDLLQLISNDKLKSVEHRVLANHIGPRVSVACFFTPHLYPSMKTYGPIKELLSEENPPLYRETSVQDFIAYYESKGLDGNSALTHFKLRR
********INERFEELKAFDESKAGVKGLVDAGITKVPGIFICSSE**************THFRIPVVDLKEVRFQRAEAVSGVLKAAEEVGFFQVINHGVATEVLVGMLEAARGFHELPVEVKEEYYSREVNRKVKYGSNFDLYESSSANWRDTLFCVMGPEPLDPQELPFVCRDITLEYSRQVHKLGTLLFELISEALGLKPDYLLNMECAKGHCLLSNYYPACPQPELTMGTTKHSDPDFLTILLQDHMGGLQVFHQNQWIDVPPLSGAFVVNIGDLLQLISNDKLKSVEHRVLANHIGPRVSVACFFTPHLYPSMKTYGPIKELLSEENPPLYRETSVQDFIAYYESKGLDGNSALTHF*LRR
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MGVSEASSINERFEELKAFDESKAGVKGLVDAGITKVPGIFICSSEELDRDRQNSNEPTRTHFRIPVVDLKEVRFQRAEAVSGVLKAAEEVGFFQVINHGVATEVLVGMLEAARGFHELPVEVKEEYYSREVNRKVKYGSNFDLYESSSANWRDTLFCVMGPEPLDPQELPFVCRDITLEYSRQVHKLGTLLFELISEALGLKPDYLLNMECAKGHCLLSNYYPACPQPELTMGTTKHSDPDFLTILLQDHMGGLQVFHQNQWIDVPPLSGAFVVNIGDLLQLISNDKLKSVEHRVLANHIGPRVSVACFFTPHLYPSMKTYGPIKELLSEENPPLYRETSVQDFIAYYESKGLDGNSALTHFKLRR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query367 2.2.26 [Sep-21-2011]
Q84MB3365 1-aminocyclopropane-1-car yes no 0.956 0.961 0.544 1e-112
Q9C5K7369 1-aminocyclopropane-1-car no no 0.961 0.956 0.548 1e-110
Q8H1S4369 1-aminocyclopropane-1-car no no 0.989 0.983 0.528 1e-110
O04847401 Deacetoxyvindoline 4-hydr N/A no 0.959 0.877 0.531 1e-106
P93824360 1-aminocyclopropane-1-car no no 0.953 0.972 0.518 1e-104
Q9LTH8364 1-aminocyclopropane-1-car no no 0.950 0.958 0.519 1e-100
Q9LTH7366 1-aminocyclopropane-1-car no no 0.948 0.950 0.511 1e-100
Q9LSW7365 1-aminocyclopropane-1-car no no 0.975 0.980 0.483 4e-99
P10967363 1-aminocyclopropane-1-car N/A no 0.945 0.955 0.537 6e-99
Q43383398 1-aminocyclopropane-1-car no no 0.961 0.886 0.495 3e-97
>sp|Q84MB3|ACCH1_ARATH 1-aminocyclopropane-1-carboxylate oxidase homolog 1 OS=Arabidopsis thaliana GN=At1g06620 PE=2 SV=1 Back     alignment and function desciption
 Score =  405 bits (1041), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 195/358 (54%), Positives = 251/358 (70%), Gaps = 7/358 (1%)

Query: 11  ERFEELKAFDESKAGVKGLVDAGITKVPGIFICSSEELDRDRQNSNEPTRTHFRIPVVDL 70
           +R   LKAFDE+K GVKGL+DAGIT++P IF      L     +   P+ + F IP +DL
Sbjct: 12  DRSTLLKAFDETKTGVKGLIDAGITEIPSIFRAPPATL----TSPKPPSSSDFSIPTIDL 67

Query: 71  K---EVRFQRAEAVSGVLKAAEEVGFFQVINHGVATEVLVGMLEAARGFHELPVEVKEEY 127
           K        R   V  +  AAE+ GFFQVINHG+  +VL  M++  R FHE   EVK+ +
Sbjct: 68  KGGGTDSITRRSLVEKIGDAAEKWGFFQVINHGIPMDVLEKMIDGIREFHEQDTEVKKGF 127

Query: 128 YSREVNRKVKYGSNFDLYESSSANWRDTLFCVMGPEPLDPQELPFVCRDITLEYSRQVHK 187
           YSR+   K+ Y SNFDL+ S +ANWRDTL C   P+P  P++LP  C ++ +EYS++V K
Sbjct: 128 YSRDPASKMVYSSNFDLFSSPAANWRDTLGCYTAPDPPRPEDLPATCGEMMIEYSKEVMK 187

Query: 188 LGTLLFELISEALGLKPDYLLNMECAKGHCLLSNYYPACPQPELTMGTTKHSDPDFLTIL 247
           LG LLFEL+SEALGL  ++L +M+C     LL +YYP CPQP+LT+G TKHSD  FLTIL
Sbjct: 188 LGKLLFELLSEALGLNTNHLKDMDCTNSLLLLGHYYPPCPQPDLTLGLTKHSDNSFLTIL 247

Query: 248 LQDHMGGLQVFHQNQWIDVPPLSGAFVVNIGDLLQLISNDKLKSVEHRVLANHIGPRVSV 307
           LQDH+GGLQV H   W+DVPP+ GA VVN+GDLLQLI+NDK  SVEHRVLAN  GPR+SV
Sbjct: 248 LQDHIGGLQVLHDQYWVDVPPVPGALVVNVGDLLQLITNDKFISVEHRVLANVAGPRISV 307

Query: 308 ACFFTPHLYPSMKTYGPIKELLSEENPPLYRETSVQDFIAYYESKGLDGNSALTHFKL 365
           ACFF+ +L  + + YGPIKE+LSEENPP YR+T++ ++  +Y SKG DG S L + K+
Sbjct: 308 ACFFSSYLMANPRVYGPIKEILSEENPPNYRDTTITEYAKFYRSKGFDGTSGLLYLKI 365

Arabidopsis thaliana (taxid: 3702)
>sp|Q9C5K7|ACCH2_ARATH 1-aminocyclopropane-1-carboxylate oxidase homolog 2 OS=Arabidopsis thaliana GN=At1g06640 PE=2 SV=1 Back     alignment and function description
>sp|Q8H1S4|ACCH3_ARATH 1-aminocyclopropane-1-carboxylate oxidase homolog 3 OS=Arabidopsis thaliana GN=At1g06650 PE=2 SV=1 Back     alignment and function description
>sp|O04847|DV4H_CATRO Deacetoxyvindoline 4-hydroxylase OS=Catharanthus roseus GN=D4H PE=1 SV=2 Back     alignment and function description
>sp|P93824|ACCH6_ARATH 1-aminocyclopropane-1-carboxylate oxidase homolog 6 OS=Arabidopsis thaliana GN=At1g04350 PE=2 SV=1 Back     alignment and function description
>sp|Q9LTH8|ACH11_ARATH 1-aminocyclopropane-1-carboxylate oxidase homolog 11 OS=Arabidopsis thaliana GN=At5g59530 PE=2 SV=1 Back     alignment and function description
>sp|Q9LTH7|ACH12_ARATH 1-aminocyclopropane-1-carboxylate oxidase homolog 12 OS=Arabidopsis thaliana GN=At5g59540 PE=2 SV=1 Back     alignment and function description
>sp|Q9LSW7|ACCH9_ARATH 1-aminocyclopropane-1-carboxylate oxidase homolog 9 OS=Arabidopsis thaliana GN=At5g43440 PE=2 SV=1 Back     alignment and function description
>sp|P10967|ACCH3_SOLLC 1-aminocyclopropane-1-carboxylate oxidase homolog OS=Solanum lycopersicum GN=ACO3 PE=2 SV=1 Back     alignment and function description
>sp|Q43383|ACCH5_ARATH 1-aminocyclopropane-1-carboxylate oxidase homolog 5 OS=Arabidopsis thaliana GN=2A6 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query367
224111002374 predicted protein [Populus trichocarpa] 0.978 0.959 0.727 1e-154
118489003370 unknown [Populus trichocarpa x Populus d 0.980 0.972 0.727 1e-154
356559863369 PREDICTED: 1-aminocyclopropane-1-carboxy 1.0 0.994 0.673 1e-145
356559859374 PREDICTED: LOW QUALITY PROTEIN: 1-aminoc 0.994 0.975 0.673 1e-144
147818396367 hypothetical protein VITISV_000986 [Viti 0.945 0.945 0.608 1e-124
225433009364 PREDICTED: 1-aminocyclopropane-1-carboxy 0.970 0.978 0.576 1e-123
224111004366 predicted protein [Populus trichocarpa] 0.978 0.980 0.607 1e-123
225433017365 PREDICTED: 1-aminocyclopropane-1-carboxy 0.945 0.950 0.596 1e-123
359477716 673 PREDICTED: 1-aminocyclopropane-1-carboxy 0.950 0.518 0.598 1e-122
225433023363 PREDICTED: 1-aminocyclopropane-1-carboxy 0.945 0.955 0.600 1e-122
>gi|224111002|ref|XP_002315711.1| predicted protein [Populus trichocarpa] gi|222864751|gb|EEF01882.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  550 bits (1416), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 264/363 (72%), Positives = 302/363 (83%), Gaps = 4/363 (1%)

Query: 7   SSINERFEELKAFDESKAGVKGLVDAGITKVPGIFICSSEELDRDRQNSNEPTRTHFRIP 66
           S+  +R++E+++FDESK GVKGLVDAGITKVP  FI   E++  D  N+ E   T F IP
Sbjct: 12  SATYDRYQEIRSFDESKCGVKGLVDAGITKVPRFFIRPPEDIAADDINTGEWINTQFTIP 71

Query: 67  VVDLKEVRFQRAEAVSGVLKAAEEVGFFQVINHGVATEVLVGMLEAARGFHELPVEVKEE 126
           V+DLK +  +RAEAV+GV +AAEEVGFFQV+NHG+   VL  MLEA RGFHE P EVKEE
Sbjct: 72  VIDLKNMDSRRAEAVAGVKRAAEEVGFFQVVNHGMENRVLEEMLEAVRGFHEQPREVKEE 131

Query: 127 YYSREVNRKVKYGSNFDLYESSSANWRDTLFCVMGPEPLDPQELPFVCRDITLEYSRQVH 186
           YYSRE+ RKVKY SNFDLY+S  ANWRDTLFCVMGP+PLDPQELP V RDI +EYS +V 
Sbjct: 132 YYSREMTRKVKYVSNFDLYKSKYANWRDTLFCVMGPDPLDPQELPLVSRDIMMEYSNKVC 191

Query: 187 KLGTLLFELISEALGLKPDYLLNMECAKGHCLLSNYYPACPQPELTMGTTKHSDPDFLTI 246
           KL T+LFEL+SEALGLK D+L  M+C KGH LLS+YYPACP+PEL MGTTKHSDPDFLTI
Sbjct: 192 KLATVLFELLSEALGLKSDHLKEMDCVKGHALLSHYYPACPEPELAMGTTKHSDPDFLTI 251

Query: 247 LLQDHMGGLQVFHQNQWIDVPPLSGAFVVNIGDLLQ----LISNDKLKSVEHRVLANHIG 302
           LLQD +GGLQ+FHQN WIDVPP+ GA VVNIGDLLQ    LISNDK KSVEHRV+ANHIG
Sbjct: 252 LLQDDIGGLQIFHQNHWIDVPPVHGALVVNIGDLLQASTVLISNDKFKSVEHRVVANHIG 311

Query: 303 PRVSVACFFTPHLYPSMKTYGPIKELLSEENPPLYRETSVQDFIAYYESKGLDGNSALTH 362
           PRVSVA FFTPHLYPS + YGPIKELLSEENPP+Y E +V+DFIAYY+SKGLDGNSAL H
Sbjct: 312 PRVSVASFFTPHLYPSTRLYGPIKELLSEENPPIYCEITVKDFIAYYDSKGLDGNSALPH 371

Query: 363 FKL 365
           FK+
Sbjct: 372 FKV 374

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|118489003|gb|ABK96309.1| unknown [Populus trichocarpa x Populus deltoides] Back     alignment and taxonomy information
>gi|356559863|ref|XP_003548216.1| PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase homolog 1-like [Glycine max] Back     alignment and taxonomy information
>gi|356559859|ref|XP_003548214.1| PREDICTED: LOW QUALITY PROTEIN: 1-aminocyclopropane-1-carboxylate oxidase homolog 1-like [Glycine max] Back     alignment and taxonomy information
>gi|147818396|emb|CAN62402.1| hypothetical protein VITISV_000986 [Vitis vinifera] Back     alignment and taxonomy information
>gi|225433009|ref|XP_002284582.1| PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase homolog 1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224111004|ref|XP_002315712.1| predicted protein [Populus trichocarpa] gi|222864752|gb|EEF01883.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225433017|ref|XP_002284642.1| PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase homolog 1 [Vitis vinifera] gi|147807864|emb|CAN66433.1| hypothetical protein VITISV_027452 [Vitis vinifera] Back     alignment and taxonomy information
>gi|359477716|ref|XP_003632012.1| PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase homolog 3 [Vitis vinifera] Back     alignment and taxonomy information
>gi|225433023|ref|XP_002284638.1| PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase homolog 1 [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query367
TAIR|locus:2009130365 AT1G06620 [Arabidopsis thalian 0.956 0.961 0.544 9.8e-103
TAIR|locus:2009210369 AT1G06640 [Arabidopsis thalian 0.961 0.956 0.548 1.6e-102
TAIR|locus:2009175369 AT1G06650 [Arabidopsis thalian 0.989 0.983 0.528 1.8e-101
TAIR|locus:2052796362 AT2G30840 [Arabidopsis thalian 0.953 0.966 0.527 2.5e-97
TAIR|locus:2052781358 AT2G30830 [Arabidopsis thalian 0.945 0.969 0.534 1.4e-96
TAIR|locus:2018349360 AT1G04350 [Arabidopsis thalian 0.953 0.972 0.520 2.2e-96
TAIR|locus:2824199366 AT1G06645 [Arabidopsis thalian 0.953 0.956 0.520 7.6e-96
TAIR|locus:2148403364 AT5G59530 [Arabidopsis thalian 0.950 0.958 0.519 7e-93
TAIR|locus:2148303366 AT5G59540 [Arabidopsis thalian 0.948 0.950 0.514 7e-93
TAIR|locus:2176456365 AT5G43440 [Arabidopsis thalian 0.983 0.989 0.482 2.1e-91
TAIR|locus:2009130 AT1G06620 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1018 (363.4 bits), Expect = 9.8e-103, P = 9.8e-103
 Identities = 195/358 (54%), Positives = 251/358 (70%)

Query:    11 ERFEELKAFDESKAGVKGLVDAGITKVPGIFICSSEELDRDRQNSNEPTRTHFRIPVVDL 70
             +R   LKAFDE+K GVKGL+DAGIT++P IF      L   +     P+ + F IP +DL
Sbjct:    12 DRSTLLKAFDETKTGVKGLIDAGITEIPSIFRAPPATLTSPKP----PSSSDFSIPTIDL 67

Query:    71 K---EVRFQRAEAVSGVLKAAEEVGFFQVINHGVATEVLVGMLEAARGFHELPVEVKEEY 127
             K        R   V  +  AAE+ GFFQVINHG+  +VL  M++  R FHE   EVK+ +
Sbjct:    68 KGGGTDSITRRSLVEKIGDAAEKWGFFQVINHGIPMDVLEKMIDGIREFHEQDTEVKKGF 127

Query:   128 YSREVNRKVKYGSNFDLYESSSANWRDTLFCVMGPEPLDPQELPFVCRDITLEYSRQVHK 187
             YSR+   K+ Y SNFDL+ S +ANWRDTL C   P+P  P++LP  C ++ +EYS++V K
Sbjct:   128 YSRDPASKMVYSSNFDLFSSPAANWRDTLGCYTAPDPPRPEDLPATCGEMMIEYSKEVMK 187

Query:   188 LGTLLFELISEALGLKPDYLLNMECAKGHCLLSNYYPACPQPELTMGTTKHSDPDFLTIL 247
             LG LLFEL+SEALGL  ++L +M+C     LL +YYP CPQP+LT+G TKHSD  FLTIL
Sbjct:   188 LGKLLFELLSEALGLNTNHLKDMDCTNSLLLLGHYYPPCPQPDLTLGLTKHSDNSFLTIL 247

Query:   248 LQDHMGGLQVFHQNQWIDVPPLSGAFVVNIGDLLQLISNDKLKSVEHRVLANHIGPRVSV 307
             LQDH+GGLQV H   W+DVPP+ GA VVN+GDLLQLI+NDK  SVEHRVLAN  GPR+SV
Sbjct:   248 LQDHIGGLQVLHDQYWVDVPPVPGALVVNVGDLLQLITNDKFISVEHRVLANVAGPRISV 307

Query:   308 ACFFTPHLYPSMKTYGPIKELLSEENPPLYRETSVQDFIAYYESKGLDGNSALTHFKL 365
             ACFF+ +L  + + YGPIKE+LSEENPP YR+T++ ++  +Y SKG DG S L + K+
Sbjct:   308 ACFFSSYLMANPRVYGPIKEILSEENPPNYRDTTITEYAKFYRSKGFDGTSGLLYLKI 365
GO:0005737 "cytoplasm" evidence=ISM
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0016706 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors" evidence=IEA;ISS
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0009414 "response to water deprivation" evidence=RCA
GO:0009611 "response to wounding" evidence=RCA
GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA
GO:0042538 "hyperosmotic salinity response" evidence=RCA
TAIR|locus:2009210 AT1G06640 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2009175 AT1G06650 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2052796 AT2G30840 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2052781 AT2G30830 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2018349 AT1G04350 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2824199 AT1G06645 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2148403 AT5G59530 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2148303 AT5G59540 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2176456 AT5G43440 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q84MB3ACCH1_ARATHNo assigned EC number0.54460.95640.9616yesno
O04847DV4H_CATRO1, ., 1, 4, ., 1, 1, ., 2, 00.53160.95910.8778N/Ano
P10967ACCH3_SOLLCNo assigned EC number0.53730.94550.9559N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.14.11LOW CONFIDENCE prediction!
4th Layer1.14.11.9LOW CONFIDENCE prediction!
4th Layer1.14.11.4LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
gw1.X.5490.1
hypothetical protein (362 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query367
PLN02947374 PLN02947, PLN02947, oxidoreductase 3e-83
PLN02393362 PLN02393, PLN02393, leucoanthocyanidin dioxygenase 5e-83
PLN02639337 PLN02639, PLN02639, oxidoreductase, 2OG-Fe(II) oxy 1e-76
PLN03178360 PLN03178, PLN03178, leucoanthocyanidin dioxygenase 6e-65
PLN02912348 PLN02912, PLN02912, oxidoreductase, 2OG-Fe(II) oxy 3e-63
PLN02758361 PLN02758, PLN02758, oxidoreductase, 2OG-Fe(II) oxy 3e-61
PLN02904357 PLN02904, PLN02904, oxidoreductase 9e-55
PLN02704335 PLN02704, PLN02704, flavonol synthase 6e-51
PLN02750345 PLN02750, PLN02750, oxidoreductase, 2OG-Fe(II) oxy 4e-50
PLN02216357 PLN02216, PLN02216, protein SRG1 1e-49
PLN02254358 PLN02254, PLN02254, gibberellin 3-beta-dioxygenase 2e-47
PLN02276361 PLN02276, PLN02276, gibberellin 20-oxidase 3e-46
PLN02515358 PLN02515, PLN02515, naringenin,2-oxoglutarate 3-di 5e-45
COG3491322 COG3491, PcbC, Isopenicillin N synthase and relate 7e-42
PLN02403303 PLN02403, PLN02403, aminocyclopropanecarboxylate o 1e-38
PLN03001262 PLN03001, PLN03001, oxidoreductase, 2OG-Fe(II) oxy 1e-37
PLN02997325 PLN02997, PLN02997, flavonol synthase 1e-37
PLN02299321 PLN02299, PLN02299, 1-aminocyclopropane-1-carboxyl 2e-37
PLN00417348 PLN00417, PLN00417, oxidoreductase, 2OG-Fe(II) oxy 3e-35
pfam0317196 pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase supe 5e-35
PLN02156335 PLN02156, PLN02156, gibberellin 2-beta-dioxygenase 3e-33
PLN02365300 PLN02365, PLN02365, 2-oxoglutarate-dependent dioxy 1e-30
PLN02984341 PLN02984, PLN02984, oxidoreductase, 2OG-Fe(II) oxy 5e-26
PTZ00273320 PTZ00273, PTZ00273, oxidase reductase; Provisional 1e-25
pfam14226113 pfam14226, DIOX_N, non-haem dioxygenase in morphin 2e-22
PLN02485329 PLN02485, PLN02485, oxidoreductase 1e-19
PLN03002332 PLN03002, PLN03002, oxidoreductase, 2OG-Fe(II) oxy 3e-16
PLN03176120 PLN03176, PLN03176, flavanone-3-hydroxylase; Provi 1e-04
>gnl|CDD|215510 PLN02947, PLN02947, oxidoreductase Back     alignment and domain information 
 Score =  257 bits (658), Expect = 3e-83
 Identities = 136/338 (40%), Positives = 191/338 (56%), Gaps = 18/338 (5%)

Query: 25  GVKGLVDAGITKVPGIFICSSEE---LDRDRQNSNEPTRTHFRIPVVDLKEVRF-QRAEA 80
           GVK L D+GITKVP  +I  + +   L RD   +        ++PV+DL E+R   R   
Sbjct: 27  GVKHLCDSGITKVPAKYILPASDRPGLTRDEAIAASGN---LKLPVIDLAELRGSNRPHV 83

Query: 81  VSGVLKAAEEVGFFQVINHGVATEVLVGMLEAARGFHELPVEVKEEYYSREVNRKVKYGS 140
           ++ +  A  E GFFQV+NHGV +EV+ GM++ AR F ELP+E + +Y S ++   V+YG+
Sbjct: 84  LATLAAACREYGFFQVVNHGVPSEVIGGMIDVARRFFELPLEERAKYMSADMRAPVRYGT 143

Query: 141 NFDLYESSSANWRDTLFCVMGP----EPLDPQELPFVCRDITLEYSRQVHKLGTLLFELI 196
           +F+  + +   WRD L  V  P     P  P   P   R +   Y++   +L   L E I
Sbjct: 144 SFNQNKDAVFCWRDFLKLVCHPLSDVLPHWPSS-PADLRKVAATYAKATKRLFLELMEAI 202

Query: 197 SEALGLKPD--YLLNMECAKG-HCLLSNYYPACPQPELTMGTTKHSDPDFLTILLQDHMG 253
            E+LG+       L  E   G   ++ N YPACP+PELT+G   HSD  FLT+LLQD + 
Sbjct: 203 LESLGIVKRGSDELLEEFEAGSQMMVVNCYPACPEPELTLGMPPHSDYGFLTLLLQDEVE 262

Query: 254 GLQVFHQNQWIDVPPLSGAFVVNIGDLLQLISNDKLKSVEHRVLANHIGPRVSVACFFTP 313
           GLQ+ H  +W+ V P+ G+FVVN+GD L++ SN + KSV HRV  N   PR+SVA     
Sbjct: 263 GLQIMHAGRWVTVEPIPGSFVVNVGDHLEIFSNGRYKSVLHRVRVNSTKPRISVASL--- 319

Query: 314 HLYPSMKTYGPIKELLSEENPPLYRETSVQDFIAYYES 351
           H  P  +  GP  EL+ E+NP  Y +T    F+AY  S
Sbjct: 320 HSLPFERVVGPAPELVDEQNPRRYMDTDFATFLAYLAS 357

Length = 374
>gnl|CDD|215220 PLN02393, PLN02393, leucoanthocyanidin dioxygenase like protein Back     alignment and domain information
>gnl|CDD|178245 PLN02639, PLN02639, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215614 PLN03178, PLN03178, leucoanthocyanidin dioxygenase; Provisional Back     alignment and domain information
>gnl|CDD|178500 PLN02912, PLN02912, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215404 PLN02758, PLN02758, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|178492 PLN02904, PLN02904, oxidoreductase Back     alignment and domain information
>gnl|CDD|166345 PLN02704, PLN02704, flavonol synthase Back     alignment and domain information
>gnl|CDD|178351 PLN02750, PLN02750, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215129 PLN02216, PLN02216, protein SRG1 Back     alignment and domain information
>gnl|CDD|215142 PLN02254, PLN02254, gibberellin 3-beta-dioxygenase Back     alignment and domain information
>gnl|CDD|215156 PLN02276, PLN02276, gibberellin 20-oxidase Back     alignment and domain information
>gnl|CDD|178130 PLN02515, PLN02515, naringenin,2-oxoglutarate 3-dioxygenase Back     alignment and domain information
>gnl|CDD|226022 COG3491, PcbC, Isopenicillin N synthase and related dioxygenases [General function prediction only] Back     alignment and domain information
>gnl|CDD|178025 PLN02403, PLN02403, aminocyclopropanecarboxylate oxidase Back     alignment and domain information
>gnl|CDD|166642 PLN03001, PLN03001, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|178576 PLN02997, PLN02997, flavonol synthase Back     alignment and domain information
>gnl|CDD|215168 PLN02299, PLN02299, 1-aminocyclopropane-1-carboxylate oxidase Back     alignment and domain information
>gnl|CDD|177810 PLN00417, PLN00417, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|217403 pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase superfamily Back     alignment and domain information
>gnl|CDD|177816 PLN02156, PLN02156, gibberellin 2-beta-dioxygenase Back     alignment and domain information
>gnl|CDD|177993 PLN02365, PLN02365, 2-oxoglutarate-dependent dioxygenase Back     alignment and domain information
>gnl|CDD|215534 PLN02984, PLN02984, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|140299 PTZ00273, PTZ00273, oxidase reductase; Provisional Back     alignment and domain information
>gnl|CDD|222608 pfam14226, DIOX_N, non-haem dioxygenase in morphine synthesis N-terminal Back     alignment and domain information
>gnl|CDD|215267 PLN02485, PLN02485, oxidoreductase Back     alignment and domain information
>gnl|CDD|178579 PLN03002, PLN03002, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|178720 PLN03176, PLN03176, flavanone-3-hydroxylase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 367
PLN02947374 oxidoreductase 100.0
PLN02216357 protein SRG1 100.0
PLN02904357 oxidoreductase 100.0
PLN02758361 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02912348 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02639337 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02254358 gibberellin 3-beta-dioxygenase 100.0
PLN02393362 leucoanthocyanidin dioxygenase like protein 100.0
PLN03178360 leucoanthocyanidin dioxygenase; Provisional 100.0
PLN02276361 gibberellin 20-oxidase 100.0
PLN02704335 flavonol synthase 100.0
KOG0143322 consensus Iron/ascorbate family oxidoreductases [S 100.0
PLN02515358 naringenin,2-oxoglutarate 3-dioxygenase 100.0
PLN00417348 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02750345 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02299321 1-aminocyclopropane-1-carboxylate oxidase 100.0
PLN02997325 flavonol synthase 100.0
PTZ00273320 oxidase reductase; Provisional 100.0
PLN03002332 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02156335 gibberellin 2-beta-dioxygenase 100.0
PLN02485329 oxidoreductase 100.0
PLN02365300 2-oxoglutarate-dependent dioxygenase 100.0
PLN02403303 aminocyclopropanecarboxylate oxidase 100.0
PLN02984341 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
COG3491322 PcbC Isopenicillin N synthase and related dioxygen 100.0
PLN03001262 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PF0317198 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Ent 99.92
PLN03176120 flavanone-3-hydroxylase; Provisional 99.88
PF14226116 DIOX_N: non-haem dioxygenase in morphine synthesis 99.87
PF13640100 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; 96.61
smart00702178 P4Hc Prolyl 4-hydroxylase alpha subunit homologues 96.01
PRK05467226 Fe(II)-dependent oxygenase superfamily protein; Pr 94.5
PF12851171 Tet_JBP: Oxygenase domain of the 2OGFeDO superfami 94.01
TIGR02466201 conserved hypothetical protein. This family consis 90.45
PF13759101 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB 82.82
PF13532194 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; 80.53
>PLN02947 oxidoreductase Back     alignment and domain information 
Probab=100.00  E-value=6.5e-86  Score=641.77  Aligned_cols=336  Identities=40%  Similarity=0.675  Sum_probs=296.5

Q ss_pred             ccchHHHHhCCCCCCCCcccCCCCccccccCCCCCC---CCCCCCcceEeCCcccc-chHHHHHHHHHHHHHhCeeEEee
Q 017692           23 KAGVKGLVDAGITKVPGIFICSSEELDRDRQNSNEP---TRTHFRIPVVDLKEVRF-QRAEAVSGVLKAAEEVGFFQVIN   98 (367)
Q Consensus        23 ~~~v~~l~~~~~~~vP~~yv~~~~~~~~~~~~~~~~---~~~~~~iPvIDls~l~~-~~~~~~~~l~~A~~~~GFF~l~n   98 (367)
                      .++||.|+++|.++||++||+|++++|.   ....+   +....+||||||+.+.+ .+..++++|++||++||||||+|
T Consensus        25 ~~~v~~l~~~~~~~vp~~yv~p~~~~~~---~~~~~~~~~~~~~~iPvIDls~l~~~~~~~~~~~l~~Ac~~~GFF~v~n  101 (374)
T PLN02947         25 QKGVKHLCDSGITKVPAKYILPASDRPG---LTRDEAIAASGNLKLPVIDLAELRGSNRPHVLATLAAACREYGFFQVVN  101 (374)
T ss_pred             ecCHHHHHhcCCCcCCHHhcCCchhccc---cccccccccCCCCCCCeEECcccCCccHHHHHHHHHHHHHHCcEEEEEc
Confidence            4689999999999999999999999885   21000   01446899999999853 56788999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHhhcCCHHHHhhhhhcccCCccccccCcccccccCCCcccccccccCCC----CCCCCCCCchh
Q 017692           99 HGVATEVLVGMLEAARGFHELPVEVKEEYYSREVNRKVKYGSNFDLYESSSANWRDTLFCVMGPE----PLDPQELPFVC  174 (367)
Q Consensus        99 HGi~~~l~~~~~~~~~~fF~lP~eeK~k~~~~~~~~~~gY~~~~~~~~~~~~d~~e~~~~~~~p~----~~~p~~~p~~f  174 (367)
                      ||||.++++++++++++||+||.|+|+++...+.....||+..+....+...+|+|.+.+...|.    ..||+ .|+.|
T Consensus       102 HGIp~~li~~~~~~~~~FF~LP~eeK~k~~~~~~~~~~gyg~~~~~~~~~~~~~~e~~~~~~~p~~~~~~~WP~-~~~~f  180 (374)
T PLN02947        102 HGVPSEVIGGMIDVARRFFELPLEERAKYMSADMRAPVRYGTSFNQNKDAVFCWRDFLKLVCHPLSDVLPHWPS-SPADL  180 (374)
T ss_pred             CCCCHHHHHHHHHHHHHHhcCCHHHHhhhhcccCCCCeeeccccccccccccCceeceeeecCCcccccccCcc-chHHH
Confidence            99999999999999999999999999998654433446776555444456689999988765552    26995 46789


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHcCCC---hhhhhcccccCceeeeecccCCCCCCccCCCCCCCcCCCceEEEecCC
Q 017692          175 RDITLEYSRQVHKLGTLLFELISEALGLK---PDYLLNMECAKGHCLLSNYYPACPQPELTMGTTKHSDPDFLTILLQDH  251 (367)
Q Consensus       175 r~~~~~y~~~~~~la~~ll~~la~~Lgl~---~~~~~~~~~~~~~~lr~~~YP~~~~~~~~~g~~~HtD~~~lTlL~qd~  251 (367)
                      |+++++|+++|.+|+.+||++||++|||+   .++|.+.+....+.+|+||||||++|+.++|+++|||+|+||||+||+
T Consensus       181 r~~~~~Y~~~~~~L~~~ll~~la~~Lgl~~~~~~~~~~~~~~~~~~lrln~YPp~p~~~~~~G~~~HTD~g~lTlL~Qd~  260 (374)
T PLN02947        181 RKVAATYAKATKRLFLELMEAILESLGIVKRGSDELLEEFEAGSQMMVVNCYPACPEPELTLGMPPHSDYGFLTLLLQDE  260 (374)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCCccchHHHHHHhcCcceeeeeecCCCCCCcccccCCCCccCCCceEEEEecC
Confidence            99999999999999999999999999996   456666555566789999999999999999999999999999999999


Q ss_pred             CCCceeeeCCcEEEcCCCCCeEEEEeccchhhhcCCeeccccccccCCCCCCeEEEEEeecCCCCCCCcEEecCccccCC
Q 017692          252 MGGLQVFHQNQWIDVPPLSGAFVVNIGDLLQLISNDKLKSVEHRVLANHIGPRVSVACFFTPHLYPSMKTYGPIKELLSE  331 (367)
Q Consensus       252 ~~GLqV~~~g~W~~V~p~pg~~vVnvGD~L~~~SnG~~kS~~HRVv~~~~~~R~Si~~F~~P~~d~~~~~i~P~~~~v~~  331 (367)
                      ++||||+++|+|++|+|+||++||||||+||+||||+|||++|||++++.++||||+||++|+.   +++|+|+++|+++
T Consensus       261 v~GLQV~~~g~Wi~V~p~pga~VVNvGD~Lq~~SNG~~kS~~HRVv~~~~~~R~Sia~F~~P~~---d~~i~Pl~~lv~~  337 (374)
T PLN02947        261 VEGLQIMHAGRWVTVEPIPGSFVVNVGDHLEIFSNGRYKSVLHRVRVNSTKPRISVASLHSLPF---ERVVGPAPELVDE  337 (374)
T ss_pred             CCCeeEeECCEEEeCCCCCCeEEEEeCceeeeeeCCEEeccccccccCCCCCEEEEEEEecCCC---CCEEeCChHhcCC
Confidence            9999999999999999999999999999999999999999999999998889999999999996   4999999999999


Q ss_pred             CCCCCCCCccHHHHHHHHHHcCCCCCCccccccc
Q 017692          332 ENPPLYRETSVQDFIAYYESKGLDGNSALTHFKL  365 (367)
Q Consensus       332 ~~p~~y~~~~~~ey~~~~~~~~~~~~~~l~~~~~  365 (367)
                      ++|++|++++|+||++.++++...+++.|+.+|+
T Consensus       338 ~~p~~Y~~~~~~ey~~~~~~~~~~~~~~l~~~~~  371 (374)
T PLN02947        338 QNPRRYMDTDFATFLAYLASAEGKHKNFLESRKL  371 (374)
T ss_pred             CCCCcCCCCCHHHHHHHHHHhccCchhhhhhhhc
Confidence            9999999999999999999999999999999986

>PLN02216 protein SRG1 Back     alignment and domain information
>PLN02904 oxidoreductase Back     alignment and domain information
>PLN02758 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02912 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02639 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02254 gibberellin 3-beta-dioxygenase Back     alignment and domain information
>PLN02393 leucoanthocyanidin dioxygenase like protein Back     alignment and domain information
>PLN03178 leucoanthocyanidin dioxygenase; Provisional Back     alignment and domain information
>PLN02276 gibberellin 20-oxidase Back     alignment and domain information
>PLN02704 flavonol synthase Back     alignment and domain information
>KOG0143 consensus Iron/ascorbate family oxidoreductases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only] Back     alignment and domain information
>PLN02515 naringenin,2-oxoglutarate 3-dioxygenase Back     alignment and domain information
>PLN00417 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02750 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02299 1-aminocyclopropane-1-carboxylate oxidase Back     alignment and domain information
>PLN02997 flavonol synthase Back     alignment and domain information
>PTZ00273 oxidase reductase; Provisional Back     alignment and domain information
>PLN03002 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02156 gibberellin 2-beta-dioxygenase Back     alignment and domain information
>PLN02485 oxidoreductase Back     alignment and domain information
>PLN02365 2-oxoglutarate-dependent dioxygenase Back     alignment and domain information
>PLN02403 aminocyclopropanecarboxylate oxidase Back     alignment and domain information
>PLN02984 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>COG3491 PcbC Isopenicillin N synthase and related dioxygenases [General function prediction only] Back     alignment and domain information
>PLN03001 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PF03171 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Entry for Lysyl hydrolases This Prosite entry is a sub-family of the Pfam entry; InterPro: IPR005123 This domain is found in members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [], as well as the C-terminal of prolyl 4-hydroxylase alpha subunit Back     alignment and domain information
>PLN03176 flavanone-3-hydroxylase; Provisional Back     alignment and domain information
>PF14226 DIOX_N: non-haem dioxygenase in morphine synthesis N-terminal; PDB: 3OOX_A 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A Back     alignment and domain information
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A Back     alignment and domain information
>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues Back     alignment and domain information
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional Back     alignment and domain information
>PF12851 Tet_JBP: Oxygenase domain of the 2OGFeDO superfamily ; InterPro: IPR024779 TETs are 2OG- and Fe(II)-dependent oxygenases that catalyse the conversion of 5 methyl-Cytosine (5-MC) to 5-hydroxymethyl-cytosine (hmC) in cultured cells and in vitro [] Back     alignment and domain information
>TIGR02466 conserved hypothetical protein Back     alignment and domain information
>PF13759 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB: 3BVC_B 2RG4_A Back     alignment and domain information
>PF13532 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; PDB: 2IUW_A 3BTZ_A 3RZL_A 3RZH_A 3S5A_A 3RZG_A 3RZJ_A 3BUC_A 3H8X_A 3H8R_A Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query367
1gp5_A356 Anthocyanidin Synthase From Arabidopsis Thaliana Co 4e-37
2brt_A355 Anthocyanidin Synthase From Arabidopsis Thaliana Co 5e-37
1gp4_A356 Anthocyanidin Synthase From Arabidopsis Thaliana (S 6e-36
1w9y_A319 The Structure Of Acc Oxidase Length = 319 4e-33
3oox_A312 Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenas 5e-15
3on7_A280 Crystal Structure Of A Putative Oxygenase (So_2589) 7e-08
1ips_A331 Isopenicillin N Synthase From Aspergillus Nidulans 5e-04
2bjs_A325 Isopenicillin N Synthase C-Terminal Truncation Muta 6e-04
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed With Trans-Dihydroquercetin Length = 356 Back     alignment and structure 
Iteration: 1

 Score =  152 bits (383), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 105/323 (32%), Positives = 162/323 (50%), Gaps = 17/323 (5%)
Query: 26  VKGLVDAGITKVPGIFICSSEELDR-DRQNSNEPTRTHFRIPVVDLKEVRFQ----RAEA 80
           V+ L  +GI  +P  +I   EEL+  +     E      ++P +DLK +       R   
Sbjct: 7   VESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENC 66
Query: 81  VSGVLKAAEEVGFFQVINHGVATEVLVGMLEAARGFHELPVEVKEEYYSREVNRKVK-YG 139
           +  + KA+ + G   +INHG+  +++  + +A   F  L VE KE+Y + +   K++ YG
Sbjct: 67  IEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYG 126
Query: 140 SNFDLYESSSANWRDTLFCVMGPE-PLDPQELPFVCRD---ITLEYSRQVHKLGTLLFEL 195
           S      S    W D  F +  PE   D    P    D    T EY++ +  L T +F+ 
Sbjct: 127 SKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVFKA 186
Query: 196 ISEALGLKPDYLLNMECAKGHCLLS---NYYPACPQPELTMGTTKHSDPDFLTILLQDHM 252
           +S  LGL+PD L          LL    NYYP CPQPEL +G   H+D   LT +L + +
Sbjct: 187 LSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILHNMV 246
Query: 253 GGLQVFHQNQWIDVPPLSGAFVVNIGDLLQLISNDKLKSVEHRVLANHIGPRVSVACFFT 312
            GLQ+F++ +W+    +  + V++IGD L+++SN K KS+ HR L N    R+S A F  
Sbjct: 247 PGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCE 306
Query: 313 PHLYPSMK-TYGPIKELLSEENP 334
           P   P  K    P+ E++S E+P
Sbjct: 307 P---PKDKIVLKPLPEMVSVESP 326
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed With Naringenin Length = 355 Back     alignment and structure
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana (Selenomethionine Substituted) Length = 356 Back     alignment and structure
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase Length = 319 Back     alignment and structure
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase Family Protein (Cc_0200) From Caulobacter Crescentus At 1.44 A Resolution Length = 312 Back     alignment and structure
>pdb|3ON7|A Chain A, Crystal Structure Of A Putative Oxygenase (So_2589) From Shewanella Oneidensis At 2.20 A Resolution Length = 280 Back     alignment and structure
>pdb|1IPS|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Manganese Complex) Length = 331 Back     alignment and structure
>pdb|2BJS|A Chain A, Isopenicillin N Synthase C-Terminal Truncation Mutant Length = 325 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query367
1gp6_A356 Leucoanthocyanidin dioxygenase; 2-oxoglutarate dep 1e-149
1w9y_A319 1-aminocyclopropane-1-carboxylate oxidase 1; oxyge 1e-132
1odm_A331 Isopenicillin N synthase; antibiotic biosynthesis, 5e-77
1dcs_A311 Deacetoxycephalosporin C synthase; ferrous oxygena 3e-76
3oox_A312 Putative 2OG-Fe(II) oxygenase family protein; stru 2e-73
3on7_A280 Oxidoreductase, iron/ascorbate family; structural 5e-70
>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A* Length = 356 Back     alignment and structure
 Score =  423 bits (1089), Expect = e-149
 Identities = 103/354 (29%), Positives = 167/354 (47%), Gaps = 19/354 (5%)

Query: 26  VKGLVDAGITKVPGIFICSSEEL-DRDRQNSNEPTRTHFRIPVVDLKEVR----FQRAEA 80
           V+ L  +GI  +P  +I   EEL   +     E      ++P +DLK +       R   
Sbjct: 7   VESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENC 66

Query: 81  VSGVLKAAEEVGFFQVINHGVATEVLVGMLEAARGFHELPVEVKEEYYSREVNRKVK-YG 139
           +  + KA+ + G   +INHG+  +++  + +A   F  L VE KE+Y + +   K++ YG
Sbjct: 67  IEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYG 126

Query: 140 SNFDLYESSSANWRDTLFCVMGPEPLDPQEL----PFVCRDITLEYSRQVHKLGTLLFEL 195
           S      S    W D  F +  PE      +    P    + T EY++ +  L T +F+ 
Sbjct: 127 SKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVFKA 186

Query: 196 ISEALGLKPDYLLN-MECAKGHCLL--SNYYPACPQPELTMGTTKHSDPDFLTILLQDHM 252
           +S  LGL+PD L   +   +   L    NYYP CPQPEL +G   H+D   LT +L + +
Sbjct: 187 LSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILHNMV 246

Query: 253 GGLQVFHQNQWIDVPPLSGAFVVNIGDLLQLISNDKLKSVEHRVLANHIGPRVSVACFFT 312
            GLQ+F++ +W+    +  + V++IGD L+++SN K KS+ HR L N    R+S A F  
Sbjct: 247 PGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCE 306

Query: 313 PHLYPSMKTYGPIKELLSEENPPLYRETSVQDFIAYYESKGLDGNSALTHFKLR 366
           P          P+ E++S E+P  +   +    I +     L G         +
Sbjct: 307 PP--KDKIVLKPLPEMVSVESPAKFPPRTFAQHIEHK----LFGKEQEELVSEK 354
>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X Length = 319 Back     alignment and structure
>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ... Length = 331 Back     alignment and structure
>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A* Length = 311 Back     alignment and structure
>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15} Length = 312 Back     alignment and structure
>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis} Length = 280 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query367
1gp6_A356 Leucoanthocyanidin dioxygenase; 2-oxoglutarate dep 100.0
1w9y_A319 1-aminocyclopropane-1-carboxylate oxidase 1; oxyge 100.0
3oox_A312 Putative 2OG-Fe(II) oxygenase family protein; stru 100.0
1dcs_A311 Deacetoxycephalosporin C synthase; ferrous oxygena 100.0
1odm_A331 Isopenicillin N synthase; antibiotic biosynthesis, 100.0
3on7_A280 Oxidoreductase, iron/ascorbate family; structural 100.0
3dkq_A243 PKHD-type hydroxylase SBAL_3634; putative oxygenas 95.08
2rg4_A216 Uncharacterized protein; rhodobacterales, oceanico 94.64
2hbt_A247 EGL nine homolog 1; prolyl hydroxylase, hypoxia in 90.93
2jig_A224 Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A { 89.29
3itq_A216 Prolyl 4-hydroxylase, alpha subunit domain protei; 88.81
3tht_A345 Alkylated DNA repair protein ALKB homolog 8; struc 82.55
>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A* Back     alignment and structure
Probab=100.00  E-value=5.4e-84  Score=626.82  Aligned_cols=328  Identities=30%  Similarity=0.500  Sum_probs=290.2

Q ss_pred             ccchHHHHhCCCCCCCCcccCCCCccccccCCCCCC--CC---CCCCcceEeCCcccc----chHHHHHHHHHHHHHhCe
Q 017692           23 KAGVKGLVDAGITKVPGIFICSSEELDRDRQNSNEP--TR---THFRIPVVDLKEVRF----QRAEAVSGVLKAAEEVGF   93 (367)
Q Consensus        23 ~~~v~~l~~~~~~~vP~~yv~~~~~~~~~~~~~~~~--~~---~~~~iPvIDls~l~~----~~~~~~~~l~~A~~~~GF   93 (367)
                      ..+||+|+++|+++||++||+|++++|.   ... .  ..   ...+||||||+.+.+    .+.+++++|.+||++|||
T Consensus         4 ~~~v~~l~~~~~~~vP~~~~~p~~~~~~---~~~-~~~~~~~~~~~~iPvIDls~l~~~~~~~~~~~~~~l~~A~~~~GF   79 (356)
T 1gp6_A            4 VERVESLAKSGIISIPKEYIRPKEELES---IND-VFLEEKKEDGPQVPTIDLKNIESDDEKIRENCIEELKKASLDWGV   79 (356)
T ss_dssp             CCCHHHHHHTTCSSCCGGGSCCHHHHTT---CCC-HHHHHHCCCSCCCCEEECTTTTCSCHHHHHHHHHHHHHHHHHTSE
T ss_pred             cccHHHHHhcCCCCCCHHhcCCchhccc---ccc-cccccccccCCCCCEEEchhccCCChHHHHHHHHHHHHHHHhCCE
Confidence            5689999999999999999999888775   211 0  00   124699999999852    366789999999999999


Q ss_pred             eEEeeCCCCHHHHHHHHHHHHHhhcCCHHHHhhhhhccc-CCccccccCcccccccCCCcccccccccCCC-----CCCC
Q 017692           94 FQVINHGVATEVLVGMLEAARGFHELPVEVKEEYYSREV-NRKVKYGSNFDLYESSSANWRDTLFCVMGPE-----PLDP  167 (367)
Q Consensus        94 F~l~nHGi~~~l~~~~~~~~~~fF~lP~eeK~k~~~~~~-~~~~gY~~~~~~~~~~~~d~~e~~~~~~~p~-----~~~p  167 (367)
                      |||+||||+.++++++++++++||+||.|+|+++..... ....||+...........||+|.|.+...|.     ..||
T Consensus        80 F~v~nHGi~~~l~~~~~~~~~~FF~lP~eeK~~~~~~~~~~~~~Gy~~~~~~~~~~~~d~kE~~~~~~~p~~~~~~~~wP  159 (356)
T 1gp6_A           80 MHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWP  159 (356)
T ss_dssp             EEEESCSCCHHHHHHHHHHHHHHHTSCHHHHGGGBCBGGGTBCSEEECCCCCSTTCCCCSCEEEEEEEESGGGCCGGGSC
T ss_pred             EEEeCCCCCHHHHHHHHHHHHHHHCCCHHHHHhhcccccccCccccCcCcccCCCCCCChhheeeeecCCccccccccCC
Confidence            999999999999999999999999999999999865543 3567898766555566789999998876542     2699


Q ss_pred             CCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhhhcccc---cCceeeeecccCCCCCCccCCCCCCCcCCCce
Q 017692          168 QELPFVCRDITLEYSRQVHKLGTLLFELISEALGLKPDYLLNMEC---AKGHCLLSNYYPACPQPELTMGTTKHSDPDFL  244 (367)
Q Consensus       168 ~~~p~~fr~~~~~y~~~~~~la~~ll~~la~~Lgl~~~~~~~~~~---~~~~~lr~~~YP~~~~~~~~~g~~~HtD~~~l  244 (367)
                      +. ++.||+++++|+++|.+|+.+||++||++|||++++|.+.+.   ...+.+|+||||||++++.++|+++|||+|+|
T Consensus       160 ~~-~~~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~~~~~~~lrl~~YPp~~~~~~~~g~~~HtD~g~l  238 (356)
T 1gp6_A          160 KT-PSDYIEATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSAL  238 (356)
T ss_dssp             CS-STTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTHHHHHTTHHHHCEEEEEEEEECCCSSTTTCCSEEEECCCSSE
T ss_pred             Cc-chhhhHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcccCCccceeeeeecCCCCCcccccCcCCccCCCeE
Confidence            64 557999999999999999999999999999999999998776   35678999999999999999999999999999


Q ss_pred             EEEecCCCCCceeeeCCcEEEcCCCCCeEEEEeccchhhhcCCeeccccccccCCCCCCeEEEEEeecCCCCCCCc-EEe
Q 017692          245 TILLQDHMGGLQVFHQNQWIDVPPLSGAFVVNIGDLLQLISNDKLKSVEHRVLANHIGPRVSVACFFTPHLYPSMK-TYG  323 (367)
Q Consensus       245 TlL~qd~~~GLqV~~~g~W~~V~p~pg~~vVnvGD~L~~~SnG~~kS~~HRVv~~~~~~R~Si~~F~~P~~d~~~~-~i~  323 (367)
                      |||+||+++||||+++|+|++|+|+||++||||||+||+||||+|||++|||++++.++|||++||++|+.   ++ +|+
T Consensus       239 TlL~qd~v~GLQV~~~g~Wi~V~p~pgalvVNiGD~l~~~TnG~~kS~~HRVv~~~~~~R~Sia~F~~P~~---d~~~i~  315 (356)
T 1gp6_A          239 TFILHNMVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPK---DKIVLK  315 (356)
T ss_dssp             EEEEECSCCCEEEEETTEEEECCCCTTCEEEEECHHHHHHTTTSSCCCCEEECCCSSCCEEEEEEEEECCT---TTCEEC
T ss_pred             EEEEEcCCCCeEEecCCcEEECcCCCCeEEEEeccHHHHhcCCEeeccCceecCCCCCCEEEEEEeecCCC---CCcEEe
Confidence            99999999999999999999999999999999999999999999999999999998899999999999996   48 999


Q ss_pred             cCccccCCCCCCCCCCccHHHHHHHHHHcCCCCCC
Q 017692          324 PIKELLSEENPPLYRETSVQDFIAYYESKGLDGNS  358 (367)
Q Consensus       324 P~~~~v~~~~p~~y~~~~~~ey~~~~~~~~~~~~~  358 (367)
                      |+++|+++++|++|+++|++||+..+++.+++++.
T Consensus       316 pl~~~~~~~~p~~y~~~t~~eyl~~~~~~~~d~~~  350 (356)
T 1gp6_A          316 PLPEMVSVESPAKFPPRTFAQHIEHKLFGKEQEEL  350 (356)
T ss_dssp             CCGGGCCSSSCCSSCCEEHHHHHHHHHHHHHHHHC
T ss_pred             CChhhcCCCCCccCCCccHHHHHHHHHHhccCcch
Confidence            99999999999999999999999998887766654
>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X Back     alignment and structure
>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15} Back     alignment and structure
>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A* Back     alignment and structure
>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ... Back     alignment and structure
>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis} Back     alignment and structure
>3dkq_A PKHD-type hydroxylase SBAL_3634; putative oxygenase, structural genomics, JOI for structural genomics, JCSG; 2.26A {Shewanella baltica OS155} Back     alignment and structure
>2rg4_A Uncharacterized protein; rhodobacterales, oceanicola granulosus HTCC2516, Q2CBJ1_9RHO structural genomics, PSI-2; 1.90A {Oceanicola granulosus} PDB: 3bvc_A Back     alignment and structure
>2hbt_A EGL nine homolog 1; prolyl hydroxylase, hypoxia inducible factor, HIF, 2- oxoglutarate, oxygenase, oxidoreductase; HET: UN9; 1.60A {Homo sapiens} PDB: 2hbu_A* 2g1m_A* 3hqu_A* 3hqr_A* 2y33_A* 2y34_A* 2g19_A* 3ouj_A* 3ouh_A* 3oui_A* Back     alignment and structure
>2jig_A Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A {Chlamydomonas reinhardtii} PDB: 3gze_A 2v4a_A 2jij_A Back     alignment and structure
>3itq_A Prolyl 4-hydroxylase, alpha subunit domain protei; double-stranded beta helix, alpha-keto dependent non-heme iron oxygenase; 1.40A {Bacillus anthracis str} Back     alignment and structure
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 367
d1gp6a_349 b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cr 2e-69
d1w9ya1307 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxyla 3e-56
d1dcsa_311 b.82.2.1 (A:) Deacetoxycephalosporin C synthase {S 1e-50
d1odma_329 b.82.2.1 (A:) Isopenicillin N synthase {Emericella 2e-34
>d1gp6a_ b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 349 Back     information, alignment and structure

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Penicillin synthase-like
domain: Anthocyanidin synthase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  219 bits (559), Expect = 2e-69
 Identities = 102/338 (30%), Positives = 163/338 (48%), Gaps = 15/338 (4%)

Query: 24  AGVKGLVDAGITKVPGIFICSSEELDR-DRQNSNEPTRTHFRIPVVDLKEVR----FQRA 78
             V+ L  +GI  +P  +I   EEL+  +     E      ++P +DLK +       R 
Sbjct: 4   ERVESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRE 63

Query: 79  EAVSGVLKAAEEVGFFQVINHGVATEVLVGMLEAARGFHELPVEVKEEYYSREVNRKV-K 137
             +  + KA+ + G   +INHG+  +++  + +A   F  L VE KE+Y + +   K+  
Sbjct: 64  NCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQG 123

Query: 138 YGSNFDLYESSSANWRDTLFCVMGPEPLDP----QELPFVCRDITLEYSRQVHKLGTLLF 193
           YGS      S    W D  F +  PE         + P    + T EY++ +  L T +F
Sbjct: 124 YGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVF 183

Query: 194 ELISEALGLKPDYLLNMECAKGHCLLS---NYYPACPQPELTMGTTKHSDPDFLTILLQD 250
           + +S  LGL+PD L          LL    NYYP CPQPEL +G   H+D   LT +L +
Sbjct: 184 KALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILHN 243

Query: 251 HMGGLQVFHQNQWIDVPPLSGAFVVNIGDLLQLISNDKLKSVEHRVLANHIGPRVSVACF 310
            + GLQ+F++ +W+    +  + V++IGD L+++SN K KS+ HR L N    R+S A F
Sbjct: 244 MVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVF 303

Query: 311 FTPHLYPSMKTYGPIKELLSEENPPLYRETSVQDFIAY 348
             P          P+ E++S E+P  +   +    I +
Sbjct: 304 CEPP--KDKIVLKPLPEMVSVESPAKFPPRTFAQHIEH 339
>d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate oxidase 1 {Petunia hybrida [TaxId: 4102]} Length = 307 Back     information, alignment and structure
>d1dcsa_ b.82.2.1 (A:) Deacetoxycephalosporin C synthase {Streptomyces clavuligerus [TaxId: 1901]} Length = 311 Back     information, alignment and structure
>d1odma_ b.82.2.1 (A:) Isopenicillin N synthase {Emericella nidulans [TaxId: 162425]} Length = 329 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query367
d1gp6a_349 Anthocyanidin synthase {Mouse-ear cress (Arabidops 100.0
d1w9ya1307 1-aminocyclopropane-1-carboxylate oxidase 1 {Petun 100.0
d1odma_329 Isopenicillin N synthase {Emericella nidulans [Tax 100.0
d1dcsa_311 Deacetoxycephalosporin C synthase {Streptomyces cl 100.0
d2iuwa1210 AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606] 90.3
>d1gp6a_ b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Penicillin synthase-like
domain: Anthocyanidin synthase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=1.1e-78  Score=586.78  Aligned_cols=323  Identities=31%  Similarity=0.512  Sum_probs=275.3

Q ss_pred             ccchHHHHhCCCCCCCCcccCCCCccccccCCCC----CCCCCCCCcceEeCCcccc----chHHHHHHHHHHHHHhCee
Q 017692           23 KAGVKGLVDAGITKVPGIFICSSEELDRDRQNSN----EPTRTHFRIPVVDLKEVRF----QRAEAVSGVLKAAEEVGFF   94 (367)
Q Consensus        23 ~~~v~~l~~~~~~~vP~~yv~~~~~~~~~~~~~~----~~~~~~~~iPvIDls~l~~----~~~~~~~~l~~A~~~~GFF   94 (367)
                      ...||+||++|+++||++||||++++|.   ...    .......+||||||+.+.+    .+++++++|++||++||||
T Consensus         3 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~---~~~~~~~~~~~~~~~IPvIDls~l~~~d~~~r~~~~~~l~~A~~~~GFf   79 (349)
T d1gp6a_           3 VERVESLAKSGIISIPKEYIRPKEELES---INDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCIEELKKASLDWGVM   79 (349)
T ss_dssp             CCCHHHHHHTTCSSCCGGGSCCHHHHTT---CCCHHHHHHCCCSCCCCEEECTTTTCSCHHHHHHHHHHHHHHHHHTSEE
T ss_pred             CcchHHHHhCCCccCCHhhcCChhhcCC---CCccccccccCCCCCcCeEEChhcCCCCHHHHHHHHHHHHHHHHhCCEE
Confidence            3479999999999999999999999986   210    0023456899999999852    4678999999999999999


Q ss_pred             EEeeCCCCHHHHHHHHHHHHHhhcCCHHHHhhhhhcccCCcc-ccccCcccccccCCCcccccccccCC-----CCCCCC
Q 017692           95 QVINHGVATEVLVGMLEAARGFHELPVEVKEEYYSREVNRKV-KYGSNFDLYESSSANWRDTLFCVMGP-----EPLDPQ  168 (367)
Q Consensus        95 ~l~nHGi~~~l~~~~~~~~~~fF~lP~eeK~k~~~~~~~~~~-gY~~~~~~~~~~~~d~~e~~~~~~~p-----~~~~p~  168 (367)
                      ||+||||+.++++++++++++||+||.|+|+++......... +|+...........+|.+.+.....+     ...||+
T Consensus        80 ~l~nHGI~~~li~~~~~~~~~FF~lP~eeK~k~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~wp~  159 (349)
T d1gp6a_          80 HLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPK  159 (349)
T ss_dssp             EEESCSCCHHHHHHHHHHHHHHHTSCHHHHGGGBCBGGGTBCSEEECCCCCSTTCCCCSCEEEEEEEESGGGCCGGGSCC
T ss_pred             EEEccCCCHHHHHHHHHHHHHHHcCCHHHHhhhhcccccCCccccccccccccccccchhhhhccccccccccccccccc
Confidence            999999999999999999999999999999998654333222 34444433344556776654432222     126886


Q ss_pred             CCCchhhHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhhhcccc---cCceeeeecccCCCCCCccCCCCCCCcCCCceE
Q 017692          169 ELPFVCRDITLEYSRQVHKLGTLLFELISEALGLKPDYLLNMEC---AKGHCLLSNYYPACPQPELTMGTTKHSDPDFLT  245 (367)
Q Consensus       169 ~~p~~fr~~~~~y~~~~~~la~~ll~~la~~Lgl~~~~~~~~~~---~~~~~lr~~~YP~~~~~~~~~g~~~HtD~~~lT  245 (367)
                      . ++.|++.+++|+++|.+|+.+|+++++++||+++++|.+.+.   .....||++|||||+.++..+|+++|||+|+||
T Consensus       160 ~-~~~f~e~~~~~~~~~~~la~~ll~~la~~Lgl~~~~~~~~~~~~~~~~~~lrl~~Yp~~~~~~~~~g~~~HtD~g~lT  238 (349)
T d1gp6a_         160 T-PSDYIEATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALT  238 (349)
T ss_dssp             S-STTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTHHHHHTTHHHHCEEEEEEEEECCCSSTTTCCSEEEECCCSSEE
T ss_pred             c-cchHHHHHHHHHHHHHHHHHhhhHHHHHHcCCCHHHHHHHhccccccceeeeecccccccchhhccccccCCCCcceE
Confidence            4 456999999999999999999999999999999999887642   345679999999999999999999999999999


Q ss_pred             EEecCCCCCceeeeCCcEEEcCCCCCeEEEEeccchhhhcCCeeccccccccCCCCCCeEEEEEeecCCCCCCCcEEecC
Q 017692          246 ILLQDHMGGLQVFHQNQWIDVPPLSGAFVVNIGDLLQLISNDKLKSVEHRVLANHIGPRVSVACFFTPHLYPSMKTYGPI  325 (367)
Q Consensus       246 lL~qd~~~GLqV~~~g~W~~V~p~pg~~vVnvGD~L~~~SnG~~kS~~HRVv~~~~~~R~Si~~F~~P~~d~~~~~i~P~  325 (367)
                      ||+|+.++||||+++|+|++|+|.+|++|||+||+||+||||+|||++|||+.+++++||||+||++|+.|  .++++|+
T Consensus       239 lL~q~~~~GLqv~~~g~W~~V~p~~~a~vVNvGD~l~~~TnG~~~St~HRVv~~~~~~R~Si~~F~~p~~d--~~i~~pl  316 (349)
T d1gp6a_         239 FILHNMVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKD--KIVLKPL  316 (349)
T ss_dssp             EEEECSCCCEEEEETTEEEECCCCTTCEEEEECHHHHHHTTTSSCCCCEEECCCSSCCEEEEEEEEECCTT--TCEECCC
T ss_pred             EEeccCCcceeeecCCceEEccCCCCCeeeeHHhHHHHHhCCCccCcCccccCCCCCCeEEEEEEecCCCc--ceeecCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999965  2456999


Q ss_pred             ccccCCCCCCCCCCccHHHHHHHHHH
Q 017692          326 KELLSEENPPLYRETSVQDFIAYYES  351 (367)
Q Consensus       326 ~~~v~~~~p~~y~~~~~~ey~~~~~~  351 (367)
                      |+||++++|++|+++|++||++.++.
T Consensus       317 ~~~v~~~~p~~y~~~t~~e~~~~rl~  342 (349)
T d1gp6a_         317 PEMVSVESPAKFPPRTFAQHIEHKLF  342 (349)
T ss_dssp             GGGCCSSSCCSSCCEEHHHHHHHHHH
T ss_pred             HHHcCCCCCCCCCCccHHHHHHHHHh
Confidence            99999999999999999999998763
>d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate oxidase 1 {Petunia hybrida [TaxId: 4102]} Back     information, alignment and structure
>d1odma_ b.82.2.1 (A:) Isopenicillin N synthase {Emericella nidulans [TaxId: 162425]} Back     information, alignment and structure
>d1dcsa_ b.82.2.1 (A:) Deacetoxycephalosporin C synthase {Streptomyces clavuligerus [TaxId: 1901]} Back     information, alignment and structure
>d2iuwa1 b.82.2.10 (A:70-279) AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure