BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017693
(367 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein
Length = 979
Score = 488 bits (1255), Expect = e-138, Method: Compositional matrix adjust.
Identities = 228/392 (58%), Positives = 289/392 (73%), Gaps = 29/392 (7%)
Query: 1 MEKVKDGKNQQQGGGLATILAIGTANPPNCIYQADYPDYYFRVTNSDHMTLLKQKFKRIC 60
M V++ +N Q+ G ATILAIGTA P +C+YQ+DY DYYF+VT S+HMT LK+KF RIC
Sbjct: 588 MASVEEFRNAQRAKGPATILAIGTATPDHCVYQSDYADYYFKVTKSEHMTALKKKFNRIC 647
Query: 61 EKSNVKKRYFHVTEDILKKNPNICAYDGSSLDSRQDILVREVPKLGEEAATKAIKEWGQS 120
+KS +KKRY H+TE++L+++PNI AY SL+ RQ+I+ EVPKLG+EAA KA+KEWGQ
Sbjct: 648 DKSMIKKRYIHLTEEMLEEHPNIGAYMAPSLNIRQEIITAEVPKLGKEAALKALKEWGQP 707
Query: 121 KSQITHLIFCSLVGVDMPGADYQLTKMLGLNPSVKRVMLYFQGCYIGATAIRMAKDFAEN 180
KS+ITHL+FC+ GV+MPGADY+L +LGL PSV+RVMLY QGCY G T +R AKD AEN
Sbjct: 708 KSKITHLVFCTTSGVEMPGADYKLANLLGLEPSVRRVMLYHQGCYAGGTVLRTAKDLAEN 767
Query: 181 NP----------------------------GQALFGDGAAALIIGANPDTTLSEKPLFQI 212
N GQALFGDG+AA+I+G++PD ++ E+PLFQ+
Sbjct: 768 NAGARVLVVCSEITVVTFRGPSEDALDSLVGQALFGDGSAAVIVGSDPDISI-ERPLFQL 826
Query: 213 VSGAQTILPGSDSDVAGQFREMGLTVHLSKNVATVVSENIEKCLDEAFSPFGIKDWNSLF 272
VS AQT +P S +AG RE+GLT HL NV T++SEN+EKCL +AF P GI DWNSLF
Sbjct: 827 VSAAQTFIPNSAGAIAGNLREVGLTFHLWPNVPTLISENVEKCLTQAFDPLGISDWNSLF 886
Query: 273 WIVQPGGPAIVNQIEAKLGLKQQKLSATRHVLSEYGNMGGVSVFFILDEIRRKSAEEGKV 332
WI PGGPAI++ +EAKL L ++KL ATRHVLSEYGNM V FILDE+R+KS + +
Sbjct: 887 WIAHPGGPAILDAVEAKLNLDKKKLEATRHVLSEYGNMSSACVLFILDEMRKKSLKGERA 946
Query: 333 TTGEGLEWGVMFGIGAGVTVDTVVLRSFPFPT 364
TTGEGL+WGV+FG G G+T++TVVL S P T
Sbjct: 947 TTGEGLDWGVLFGFGPGLTIETVVLHSIPMVT 978
>pdb|3A5S|A Chain A, Benzalacetone Synthase (I207lL208F)
pdb|3A5S|B Chain B, Benzalacetone Synthase (I207lL208F)
Length = 387
Score = 481 bits (1238), Expect = e-136, Method: Compositional matrix adjust.
Identities = 226/383 (59%), Positives = 282/383 (73%), Gaps = 29/383 (7%)
Query: 7 GKNQQQGGGLATILAIGTANPPNCIYQADYPDYYFRVTNSDHMTLLKQKFKRICEKSNVK 66
G ++ LAT++AIGTANPPNC YQAD+PD+YFRVTNSDH+ LKQKFKR+CE S ++
Sbjct: 3 GMATEEMKKLATVMAIGTANPPNCYYQADFPDFYFRVTNSDHLINLKQKFKRLCENSRIE 62
Query: 67 KRYFHVTEDILKKNPNICAYDGSSLDSRQDILVREVPKLGEEAATKAIKEWGQSKSQITH 126
KRY HVTE+ILK+NPNI AY+ +SL+ R + V+ V +LG+EAA KAIKEWGQ KS+ITH
Sbjct: 63 KRYLHVTEEILKENPNIAAYEATSLNVRHKMQVKGVAELGKEAALKAIKEWGQPKSKITH 122
Query: 127 LIFCSLVGVDMPGADYQLTKMLGLNPSVKRVMLYFQGCYIGATAIRMAKDFAENNP---- 182
LI C L GVDMPGADYQLTK+L L+PSVKR M Y GCY G T +R+AKD AENN
Sbjct: 123 LIVCCLAGVDMPGADYQLTKLLDLDPSVKRFMFYHLGCYAGGTVLRLAKDIAENNKGARV 182
Query: 183 ------------------------GQALFGDGAAALIIGANPDTTLSEKPLFQIVSGAQT 218
GQALFGDGAAA+I+GA+PD T+ E+P+F++VS AQT
Sbjct: 183 LIVCSEMTTTCFRGPSETHLDSMIGQALFGDGAAAVIVGADPDLTV-ERPIFELVSTAQT 241
Query: 219 ILPGSDSDVAGQFREMGLTVHLSKNVATVVSENIEKCLDEAFSPFGIKDWNSLFWIVQPG 278
I+P S + G E GL+ HL K V T++S NI+ CL +AF+P I DWNSLFWI PG
Sbjct: 242 IVPESHGAIEGHLLESGLSFHLYKTVPTLISNNIKTCLSDAFTPLNISDWNSLFWIAHPG 301
Query: 279 GPAIVNQIEAKLGLKQQKLSATRHVLSEYGNMGGVSVFFILDEIRRKSAEEGKVTTGEGL 338
GPAI++Q+ AK+GL+++KL TR VL +YGNM +VFFI+DE+R+KS E G+ TTGEGL
Sbjct: 302 GPAILDQVTAKVGLEKEKLKVTRQVLKDYGNMSSATVFFIMDEMRKKSLENGQATTGEGL 361
Query: 339 EWGVMFGIGAGVTVDTVVLRSFP 361
EWGV+FG G G+TV+TVVLRS P
Sbjct: 362 EWGVLFGFGPGITVETVVLRSVP 384
>pdb|3A5Q|A Chain A, Benzalacetone Synthase From Rheum Palmatum
pdb|3A5Q|B Chain B, Benzalacetone Synthase From Rheum Palmatum
pdb|3A5R|A Chain A, Benzalacetone Synthase From Rheum Palmatum Complexed With
4-Coumaroyl- Primed Monoketide Intermediate
pdb|3A5R|B Chain B, Benzalacetone Synthase From Rheum Palmatum Complexed With
4-Coumaroyl- Primed Monoketide Intermediate
Length = 387
Score = 478 bits (1229), Expect = e-135, Method: Compositional matrix adjust.
Identities = 224/383 (58%), Positives = 281/383 (73%), Gaps = 29/383 (7%)
Query: 7 GKNQQQGGGLATILAIGTANPPNCIYQADYPDYYFRVTNSDHMTLLKQKFKRICEKSNVK 66
G ++ LAT++AIGTANPPNC YQAD+PD+YFRVTNSDH+ LKQKFKR+CE S ++
Sbjct: 3 GMATEEMKKLATVMAIGTANPPNCYYQADFPDFYFRVTNSDHLINLKQKFKRLCENSRIE 62
Query: 67 KRYFHVTEDILKKNPNICAYDGSSLDSRQDILVREVPKLGEEAATKAIKEWGQSKSQITH 126
KRY HVTE+ILK+NPNI AY+ +SL+ R + V+ V +LG+EAA KAIKEWGQ KS+ITH
Sbjct: 63 KRYLHVTEEILKENPNIAAYEATSLNVRHKMQVKGVAELGKEAALKAIKEWGQPKSKITH 122
Query: 127 LIFCSLVGVDMPGADYQLTKMLGLNPSVKRVMLYFQGCYIGATAIRMAKDFAENNP---- 182
LI C L GVDMPGADYQLTK+L L+PSVKR M Y GCY G T +R+AKD AENN
Sbjct: 123 LIVCCLAGVDMPGADYQLTKLLDLDPSVKRFMFYHLGCYAGGTVLRLAKDIAENNKGARV 182
Query: 183 ------------------------GQALFGDGAAALIIGANPDTTLSEKPLFQIVSGAQT 218
GQA+ GDGAAA+I+GA+PD T+ E+P+F++VS AQT
Sbjct: 183 LIVCSEMTTTCFRGPSETHLDSMIGQAILGDGAAAVIVGADPDLTV-ERPIFELVSTAQT 241
Query: 219 ILPGSDSDVAGQFREMGLTVHLSKNVATVVSENIEKCLDEAFSPFGIKDWNSLFWIVQPG 278
I+P S + G E GL+ HL K V T++S NI+ CL +AF+P I DWNSLFWI PG
Sbjct: 242 IVPESHGAIEGHLLESGLSFHLYKTVPTLISNNIKTCLSDAFTPLNISDWNSLFWIAHPG 301
Query: 279 GPAIVNQIEAKLGLKQQKLSATRHVLSEYGNMGGVSVFFILDEIRRKSAEEGKVTTGEGL 338
GPAI++Q+ AK+GL+++KL TR VL +YGNM +VFFI+DE+R+KS E G+ TTGEGL
Sbjct: 302 GPAILDQVTAKVGLEKEKLKVTRQVLKDYGNMSSATVFFIMDEMRKKSLENGQATTGEGL 361
Query: 339 EWGVMFGIGAGVTVDTVVLRSFP 361
EWGV+FG G G+TV+TVVLRS P
Sbjct: 362 EWGVLFGFGPGITVETVVLRSVP 384
>pdb|1CGZ|A Chain A, Chalcone Synthase From Alfalfa Complexed With Resveratrol
pdb|1CGK|A Chain A, Chalcone Synthase From Alfalfa Complexed With Naringenin
Length = 389
Score = 468 bits (1203), Expect = e-132, Method: Compositional matrix adjust.
Identities = 224/387 (57%), Positives = 283/387 (73%), Gaps = 29/387 (7%)
Query: 1 MEKVKDGKNQQQGGGLATILAIGTANPPNCIYQADYPDYYFRVTNSDHMTLLKQKFKRIC 60
M V + + Q+ G ATILAIGTANP NC+ Q+ YPD+YF++TNS+H T LK+KF+R+C
Sbjct: 1 MVSVSEIRKAQRAEGPATILAIGTANPANCVEQSTYPDFYFKITNSEHKTELKEKFQRMC 60
Query: 61 EKSNVKKRYFHVTEDILKKNPNICAYDGSSLDSRQDILVREVPKLGEEAATKAIKEWGQS 120
+KS +K+RY ++TE+ILK+NPN+C Y SLD+RQD++V EVP+LG+EAA KAIKEWGQ
Sbjct: 61 DKSMIKRRYMYLTEEILKENPNVCEYMAPSLDARQDMVVVEVPRLGKEAAVKAIKEWGQP 120
Query: 121 KSQITHLIFCSLVGVDMPGADYQLTKMLGLNPSVKRVMLYFQGCYIGATAIRMAKDFAEN 180
KS+ITHLI C+ GVDMPGADYQLTK+LGL P VKR M+Y QGC+ G T +R+AKD AEN
Sbjct: 121 KSKITHLIVCTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGCFAGGTVLRLAKDLAEN 180
Query: 181 NP----------------------------GQALFGDGAAALIIGANPDTTLSEKPLFQI 212
N GQALFGDGAAALI+G++P + EKP+F++
Sbjct: 181 NKGARVLVVCSEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEI-EKPIFEM 239
Query: 213 VSGAQTILPGSDSDVAGQFREMGLTVHLSKNVATVVSENIEKCLDEAFSPFGIKDWNSLF 272
V AQTI P S+ + G RE GLT HL K+V +VS+NI K L EAF P GI D+NS+F
Sbjct: 240 VWTAQTIAPDSEGAIDGHLREAGLTFHLLKDVPGIVSKNITKALVEAFEPLGISDYNSIF 299
Query: 273 WIVQPGGPAIVNQIEAKLGLKQQKLSATRHVLSEYGNMGGVSVFFILDEIRRKSAEEGKV 332
WI PGGPAI++Q+E KL LK +K++ATR VLSEYGNM V FILDE+R+KS + G
Sbjct: 300 WIAHPGGPAILDQVEQKLALKPEKMNATREVLSEYGNMSSACVLFILDEMRKKSTQNGLK 359
Query: 333 TTGEGLEWGVMFGIGAGVTVDTVVLRS 359
TTGEGLEWGV+FG G G+T++TVVLRS
Sbjct: 360 TTGEGLEWGVLFGFGPGLTIETVVLRS 386
>pdb|1CML|A Chain A, Chalcone Synthase From Alfalfa Complexed With Malonyl-Coa
pdb|1D6F|A Chain A, Chalcone Synthase C164a Mutant
Length = 389
Score = 464 bits (1195), Expect = e-131, Method: Compositional matrix adjust.
Identities = 223/387 (57%), Positives = 282/387 (72%), Gaps = 29/387 (7%)
Query: 1 MEKVKDGKNQQQGGGLATILAIGTANPPNCIYQADYPDYYFRVTNSDHMTLLKQKFKRIC 60
M V + + Q+ G ATILAIGTANP NC+ Q+ YPD+YF++TNS+H T LK+KF+R+C
Sbjct: 1 MVSVSEIRKAQRAEGPATILAIGTANPANCVEQSTYPDFYFKITNSEHKTELKEKFQRMC 60
Query: 61 EKSNVKKRYFHVTEDILKKNPNICAYDGSSLDSRQDILVREVPKLGEEAATKAIKEWGQS 120
+KS +K+RY ++TE+ILK+NPN+C Y SLD+RQD++V EVP+LG+EAA KAIKEWGQ
Sbjct: 61 DKSMIKRRYMYLTEEILKENPNVCEYMAPSLDARQDMVVVEVPRLGKEAAVKAIKEWGQP 120
Query: 121 KSQITHLIFCSLVGVDMPGADYQLTKMLGLNPSVKRVMLYFQGCYIGATAIRMAKDFAEN 180
KS+ITHLI C+ GVDMPGADYQLTK+LGL P VKR M+Y QG + G T +R+AKD AEN
Sbjct: 121 KSKITHLIVCTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGAFAGGTVLRLAKDLAEN 180
Query: 181 NP----------------------------GQALFGDGAAALIIGANPDTTLSEKPLFQI 212
N GQALFGDGAAALI+G++P + EKP+F++
Sbjct: 181 NKGARVLVVCSEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEI-EKPIFEM 239
Query: 213 VSGAQTILPGSDSDVAGQFREMGLTVHLSKNVATVVSENIEKCLDEAFSPFGIKDWNSLF 272
V AQTI P S+ + G RE GLT HL K+V +VS+NI K L EAF P GI D+NS+F
Sbjct: 240 VWTAQTIAPDSEGAIDGHLREAGLTFHLLKDVPGIVSKNITKALVEAFEPLGISDYNSIF 299
Query: 273 WIVQPGGPAIVNQIEAKLGLKQQKLSATRHVLSEYGNMGGVSVFFILDEIRRKSAEEGKV 332
WI PGGPAI++Q+E KL LK +K++ATR VLSEYGNM V FILDE+R+KS + G
Sbjct: 300 WIAHPGGPAILDQVEQKLALKPEKMNATREVLSEYGNMSSACVLFILDEMRKKSTQNGLK 359
Query: 333 TTGEGLEWGVMFGIGAGVTVDTVVLRS 359
TTGEGLEWGV+FG G G+T++TVVLRS
Sbjct: 360 TTGEGLEWGVLFGFGPGLTIETVVLRS 386
>pdb|1D6I|A Chain A, Chalcone Synthase (H303q Mutant)
pdb|1D6I|B Chain B, Chalcone Synthase (H303q Mutant)
Length = 388
Score = 464 bits (1194), Expect = e-131, Method: Compositional matrix adjust.
Identities = 223/384 (58%), Positives = 282/384 (73%), Gaps = 29/384 (7%)
Query: 4 VKDGKNQQQGGGLATILAIGTANPPNCIYQADYPDYYFRVTNSDHMTLLKQKFKRICEKS 63
V + + Q+ G ATILAIGTANP NC+ Q+ YPD+YF++TNS+H T LK+KF+R+C+KS
Sbjct: 3 VSEIRKAQRAEGPATILAIGTANPANCVEQSTYPDFYFKITNSEHKTELKEKFQRMCDKS 62
Query: 64 NVKKRYFHVTEDILKKNPNICAYDGSSLDSRQDILVREVPKLGEEAATKAIKEWGQSKSQ 123
+K+RY ++TE+ILK+NPN+C Y SLD+RQD++V EVP+LG+EAA KAIKEWGQ KS+
Sbjct: 63 MIKRRYMYLTEEILKENPNVCEYMAPSLDARQDMVVVEVPRLGKEAAVKAIKEWGQPKSK 122
Query: 124 ITHLIFCSLVGVDMPGADYQLTKMLGLNPSVKRVMLYFQGCYIGATAIRMAKDFAENNP- 182
ITHLI C+ GVDMPGADYQLTK+LGL P VKR M+Y QG + G T +R+AKD AENN
Sbjct: 123 ITHLIVCTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGXFAGGTVLRLAKDLAENNKG 182
Query: 183 ---------------------------GQALFGDGAAALIIGANPDTTLSEKPLFQIVSG 215
GQALFGDGAAALI+G++P + EKP+F++V
Sbjct: 183 ARVLVVCSEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEI-EKPIFEMVWT 241
Query: 216 AQTILPGSDSDVAGQFREMGLTVHLSKNVATVVSENIEKCLDEAFSPFGIKDWNSLFWIV 275
AQTI P S+ + G RE GLT HL K+V +VS+NI K L EAF P GI D+NS+FWI
Sbjct: 242 AQTIAPDSEGAIDGHLREAGLTFHLLKDVPGIVSKNITKALVEAFEPLGISDYNSIFWIA 301
Query: 276 QPGGPAIVNQIEAKLGLKQQKLSATRHVLSEYGNMGGVSVFFILDEIRRKSAEEGKVTTG 335
QPGGPAI++Q+E KL LK +K++ATR VLSEYGNM V FILDE+R+KS + G TTG
Sbjct: 302 QPGGPAILDQVEQKLALKPEKMNATREVLSEYGNMSSACVLFILDEMRKKSTQNGLKTTG 361
Query: 336 EGLEWGVMFGIGAGVTVDTVVLRS 359
EGLEWGV+FG G G+T++TVVLRS
Sbjct: 362 EGLEWGVLFGFGPGLTIETVVLRS 385
>pdb|1CHW|A Chain A, Chalcone Synthase From Alfalfa Complexed With Hexanoyl-Coa
pdb|1CHW|B Chain B, Chalcone Synthase From Alfalfa Complexed With Hexanoyl-Coa
Length = 389
Score = 464 bits (1194), Expect = e-131, Method: Compositional matrix adjust.
Identities = 223/387 (57%), Positives = 282/387 (72%), Gaps = 29/387 (7%)
Query: 1 MEKVKDGKNQQQGGGLATILAIGTANPPNCIYQADYPDYYFRVTNSDHMTLLKQKFKRIC 60
M V + + Q+ G ATILAIGTANP NC+ Q+ YPD+YF++TNS+H T LK+KF+R+C
Sbjct: 1 MVSVSEIRKAQRAEGPATILAIGTANPANCVEQSTYPDFYFKITNSEHKTELKEKFQRMC 60
Query: 61 EKSNVKKRYFHVTEDILKKNPNICAYDGSSLDSRQDILVREVPKLGEEAATKAIKEWGQS 120
+KS +K+RY ++TE+ILK+NPN+C Y SLD+RQD++V EVP+LG+EAA KAIKEWGQ
Sbjct: 61 DKSMIKRRYMYLTEEILKENPNVCEYMAPSLDARQDMVVVEVPRLGKEAAVKAIKEWGQP 120
Query: 121 KSQITHLIFCSLVGVDMPGADYQLTKMLGLNPSVKRVMLYFQGCYIGATAIRMAKDFAEN 180
KS+ITHLI C+ GVDMPGADYQLTK+LGL P VKR M+Y QG + G T +R+AKD AEN
Sbjct: 121 KSKITHLIVCTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGSFAGGTVLRLAKDLAEN 180
Query: 181 NP----------------------------GQALFGDGAAALIIGANPDTTLSEKPLFQI 212
N GQALFGDGAAALI+G++P + EKP+F++
Sbjct: 181 NKGARVLVVCSEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEI-EKPIFEM 239
Query: 213 VSGAQTILPGSDSDVAGQFREMGLTVHLSKNVATVVSENIEKCLDEAFSPFGIKDWNSLF 272
V AQTI P S+ + G RE GLT HL K+V +VS+NI K L EAF P GI D+NS+F
Sbjct: 240 VWTAQTIAPDSEGAIDGHLREAGLTFHLLKDVPGIVSKNITKALVEAFEPLGISDYNSIF 299
Query: 273 WIVQPGGPAIVNQIEAKLGLKQQKLSATRHVLSEYGNMGGVSVFFILDEIRRKSAEEGKV 332
WI PGGPAI++Q+E KL LK +K++ATR VLSEYGNM V FILDE+R+KS + G
Sbjct: 300 WIAHPGGPAILDQVEQKLALKPEKMNATREVLSEYGNMSSACVLFILDEMRKKSTQNGLK 359
Query: 333 TTGEGLEWGVMFGIGAGVTVDTVVLRS 359
TTGEGLEWGV+FG G G+T++TVVLRS
Sbjct: 360 TTGEGLEWGVLFGFGPGLTIETVVLRS 386
>pdb|1BI5|A Chain A, Chalcone Synthase From Alfalfa
Length = 389
Score = 464 bits (1193), Expect = e-131, Method: Compositional matrix adjust.
Identities = 223/387 (57%), Positives = 282/387 (72%), Gaps = 29/387 (7%)
Query: 1 MEKVKDGKNQQQGGGLATILAIGTANPPNCIYQADYPDYYFRVTNSDHMTLLKQKFKRIC 60
M V + + Q+ G ATILAIGTANP NC+ Q+ YPD+YF++TNS+H T LK+KF+R+C
Sbjct: 1 MVSVSEIRKAQRAEGPATILAIGTANPANCVEQSTYPDFYFKITNSEHKTELKEKFQRMC 60
Query: 61 EKSNVKKRYFHVTEDILKKNPNICAYDGSSLDSRQDILVREVPKLGEEAATKAIKEWGQS 120
+KS +K+RY ++TE+ILK+NPN+C Y SLD+RQD++V EVP+LG+EAA KAIKEWGQ
Sbjct: 61 DKSMIKRRYMYLTEEILKENPNVCEYMAPSLDARQDMVVVEVPRLGKEAAVKAIKEWGQP 120
Query: 121 KSQITHLIFCSLVGVDMPGADYQLTKMLGLNPSVKRVMLYFQGCYIGATAIRMAKDFAEN 180
KS+ITHLI C+ GVDMPGADYQLTK+LGL P VKR M+Y QG + G T +R+AKD AEN
Sbjct: 121 KSKITHLIVCTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGXFAGGTVLRLAKDLAEN 180
Query: 181 NP----------------------------GQALFGDGAAALIIGANPDTTLSEKPLFQI 212
N GQALFGDGAAALI+G++P + EKP+F++
Sbjct: 181 NKGARVLVVCSEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEI-EKPIFEM 239
Query: 213 VSGAQTILPGSDSDVAGQFREMGLTVHLSKNVATVVSENIEKCLDEAFSPFGIKDWNSLF 272
V AQTI P S+ + G RE GLT HL K+V +VS+NI K L EAF P GI D+NS+F
Sbjct: 240 VWTAQTIAPDSEGAIDGHLREAGLTFHLLKDVPGIVSKNITKALVEAFEPLGISDYNSIF 299
Query: 273 WIVQPGGPAIVNQIEAKLGLKQQKLSATRHVLSEYGNMGGVSVFFILDEIRRKSAEEGKV 332
WI PGGPAI++Q+E KL LK +K++ATR VLSEYGNM V FILDE+R+KS + G
Sbjct: 300 WIAHPGGPAILDQVEQKLALKPEKMNATREVLSEYGNMSSACVLFILDEMRKKSTQNGLK 359
Query: 333 TTGEGLEWGVMFGIGAGVTVDTVVLRS 359
TTGEGLEWGV+FG G G+T++TVVLRS
Sbjct: 360 TTGEGLEWGVLFGFGPGLTIETVVLRS 386
>pdb|1BQ6|A Chain A, Chalcone Synthase From Alfalfa With Coenzyme A
Length = 388
Score = 462 bits (1190), Expect = e-130, Method: Compositional matrix adjust.
Identities = 222/384 (57%), Positives = 281/384 (73%), Gaps = 29/384 (7%)
Query: 4 VKDGKNQQQGGGLATILAIGTANPPNCIYQADYPDYYFRVTNSDHMTLLKQKFKRICEKS 63
V + + Q+ G ATILAIGTANP NC+ Q+ YPD+YF++TNS+H T LK+KF+R+C+KS
Sbjct: 3 VSEIRKAQRAEGPATILAIGTANPANCVEQSTYPDFYFKITNSEHKTELKEKFQRMCDKS 62
Query: 64 NVKKRYFHVTEDILKKNPNICAYDGSSLDSRQDILVREVPKLGEEAATKAIKEWGQSKSQ 123
+K+RY ++TE+ILK+NPN+C Y SLD+RQD++V EVP+LG+EAA KAIKEWGQ KS+
Sbjct: 63 MIKRRYMYLTEEILKENPNVCEYMAPSLDARQDMVVVEVPRLGKEAAVKAIKEWGQPKSK 122
Query: 124 ITHLIFCSLVGVDMPGADYQLTKMLGLNPSVKRVMLYFQGCYIGATAIRMAKDFAENNP- 182
ITHLI C+ GVDMPGADYQLTK+LGL P VKR M+Y QG + G T +R+AKD AENN
Sbjct: 123 ITHLIVCTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGXFAGGTVLRLAKDLAENNKG 182
Query: 183 ---------------------------GQALFGDGAAALIIGANPDTTLSEKPLFQIVSG 215
GQALFGDGAAALI+G++P + EKP+F++V
Sbjct: 183 ARVLVVCSEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEI-EKPIFEMVWT 241
Query: 216 AQTILPGSDSDVAGQFREMGLTVHLSKNVATVVSENIEKCLDEAFSPFGIKDWNSLFWIV 275
AQTI P S+ + G RE GLT HL K+V +VS+NI K L EAF P GI D+NS+FWI
Sbjct: 242 AQTIAPDSEGAIDGHLREAGLTFHLLKDVPGIVSKNITKALVEAFEPLGISDYNSIFWIA 301
Query: 276 QPGGPAIVNQIEAKLGLKQQKLSATRHVLSEYGNMGGVSVFFILDEIRRKSAEEGKVTTG 335
PGGPAI++Q+E KL LK +K++ATR VLSEYGNM V FILDE+R+KS + G TTG
Sbjct: 302 HPGGPAILDQVEQKLALKPEKMNATREVLSEYGNMSSACVLFILDEMRKKSTQNGLKTTG 361
Query: 336 EGLEWGVMFGIGAGVTVDTVVLRS 359
EGLEWGV+FG G G+T++TVVLRS
Sbjct: 362 EGLEWGVLFGFGPGLTIETVVLRS 385
>pdb|1I86|A Chain A, Chalcone Synthase, G256a Mutant
Length = 389
Score = 462 bits (1189), Expect = e-130, Method: Compositional matrix adjust.
Identities = 222/387 (57%), Positives = 281/387 (72%), Gaps = 29/387 (7%)
Query: 1 MEKVKDGKNQQQGGGLATILAIGTANPPNCIYQADYPDYYFRVTNSDHMTLLKQKFKRIC 60
M V + + Q+ G ATILAIGTANP NC+ Q+ YPD+YF++TNS+H T LK+KF+R+C
Sbjct: 1 MVSVSEIRKAQRAEGPATILAIGTANPANCVEQSTYPDFYFKITNSEHKTELKEKFQRMC 60
Query: 61 EKSNVKKRYFHVTEDILKKNPNICAYDGSSLDSRQDILVREVPKLGEEAATKAIKEWGQS 120
+KS +K+RY ++TE+ILK+NPN+C Y SLD+RQD++V EVP+LG+EAA KAIKEWGQ
Sbjct: 61 DKSMIKRRYMYLTEEILKENPNVCEYMAPSLDARQDMVVVEVPRLGKEAAVKAIKEWGQP 120
Query: 121 KSQITHLIFCSLVGVDMPGADYQLTKMLGLNPSVKRVMLYFQGCYIGATAIRMAKDFAEN 180
KS+ITHLI C+ GVDMPGADYQLTK+LGL P VKR M+Y QG + G T +R+AKD AEN
Sbjct: 121 KSKITHLIVCTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGXFAGGTVLRLAKDLAEN 180
Query: 181 NP----------------------------GQALFGDGAAALIIGANPDTTLSEKPLFQI 212
N GQALFGDGAAALI+G++P + EKP+F++
Sbjct: 181 NKGARVLVVCSEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEI-EKPIFEM 239
Query: 213 VSGAQTILPGSDSDVAGQFREMGLTVHLSKNVATVVSENIEKCLDEAFSPFGIKDWNSLF 272
V AQTI P S+ + RE GLT HL K+V +VS+NI K L EAF P GI D+NS+F
Sbjct: 240 VWTAQTIAPDSEGAIDAHLREAGLTFHLLKDVPGIVSKNITKALVEAFEPLGISDYNSIF 299
Query: 273 WIVQPGGPAIVNQIEAKLGLKQQKLSATRHVLSEYGNMGGVSVFFILDEIRRKSAEEGKV 332
WI PGGPAI++Q+E KL LK +K++ATR VLSEYGNM V FILDE+R+KS + G
Sbjct: 300 WIAHPGGPAILDQVEQKLALKPEKMNATREVLSEYGNMSSACVLFILDEMRKKSTQNGLK 359
Query: 333 TTGEGLEWGVMFGIGAGVTVDTVVLRS 359
TTGEGLEWGV+FG G G+T++TVVLRS
Sbjct: 360 TTGEGLEWGVLFGFGPGLTIETVVLRS 386
>pdb|1I88|A Chain A, Chalcone Synthase (G256v)
pdb|1I88|B Chain B, Chalcone Synthase (G256v)
Length = 389
Score = 461 bits (1185), Expect = e-130, Method: Compositional matrix adjust.
Identities = 222/387 (57%), Positives = 281/387 (72%), Gaps = 29/387 (7%)
Query: 1 MEKVKDGKNQQQGGGLATILAIGTANPPNCIYQADYPDYYFRVTNSDHMTLLKQKFKRIC 60
M V + + Q+ G ATILAIGTANP NC+ Q+ YPD+YF++TNS+H T LK+KF+R+C
Sbjct: 1 MVSVSEIRKAQRAEGPATILAIGTANPANCVEQSTYPDFYFKITNSEHKTELKEKFQRMC 60
Query: 61 EKSNVKKRYFHVTEDILKKNPNICAYDGSSLDSRQDILVREVPKLGEEAATKAIKEWGQS 120
+KS +K+RY ++TE+ILK+NPN+C Y SLD+RQD++V EVP+LG+EAA KAIKEWGQ
Sbjct: 61 DKSMIKRRYMYLTEEILKENPNVCEYMAPSLDARQDMVVVEVPRLGKEAAVKAIKEWGQP 120
Query: 121 KSQITHLIFCSLVGVDMPGADYQLTKMLGLNPSVKRVMLYFQGCYIGATAIRMAKDFAEN 180
KS+ITHLI C+ GVDMPGADYQLTK+LGL P VKR M+Y QG + G T +R+AKD AEN
Sbjct: 121 KSKITHLIVCTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGXFAGGTVLRLAKDLAEN 180
Query: 181 NP----------------------------GQALFGDGAAALIIGANPDTTLSEKPLFQI 212
N GQALFGDGAAALI+G++P + EKP+F++
Sbjct: 181 NKGARVLVVCSEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEI-EKPIFEM 239
Query: 213 VSGAQTILPGSDSDVAGQFREMGLTVHLSKNVATVVSENIEKCLDEAFSPFGIKDWNSLF 272
V AQTI P S+ + RE GLT HL K+V +VS+NI K L EAF P GI D+NS+F
Sbjct: 240 VWTAQTIAPDSEGAIDVHLREAGLTFHLLKDVPGIVSKNITKALVEAFEPLGISDYNSIF 299
Query: 273 WIVQPGGPAIVNQIEAKLGLKQQKLSATRHVLSEYGNMGGVSVFFILDEIRRKSAEEGKV 332
WI PGGPAI++Q+E KL LK +K++ATR VLSEYGNM V FILDE+R+KS + G
Sbjct: 300 WIAHPGGPAILDQVEQKLALKPEKMNATREVLSEYGNMSSACVLFILDEMRKKSTQNGLK 359
Query: 333 TTGEGLEWGVMFGIGAGVTVDTVVLRS 359
TTGEGLEWGV+FG G G+T++TVVLRS
Sbjct: 360 TTGEGLEWGVLFGFGPGLTIETVVLRS 386
>pdb|1I89|A Chain A, Chalcone Synthase (G256l)
pdb|1I89|B Chain B, Chalcone Synthase (G256l)
Length = 389
Score = 461 bits (1185), Expect = e-130, Method: Compositional matrix adjust.
Identities = 222/387 (57%), Positives = 281/387 (72%), Gaps = 29/387 (7%)
Query: 1 MEKVKDGKNQQQGGGLATILAIGTANPPNCIYQADYPDYYFRVTNSDHMTLLKQKFKRIC 60
M V + + Q+ G ATILAIGTANP NC+ Q+ YPD+YF++TNS+H T LK+KF+R+C
Sbjct: 1 MVSVSEIRKAQRAEGPATILAIGTANPANCVEQSTYPDFYFKITNSEHKTELKEKFQRMC 60
Query: 61 EKSNVKKRYFHVTEDILKKNPNICAYDGSSLDSRQDILVREVPKLGEEAATKAIKEWGQS 120
+KS +K+RY ++TE+ILK+NPN+C Y SLD+RQD++V EVP+LG+EAA KAIKEWGQ
Sbjct: 61 DKSMIKRRYMYLTEEILKENPNVCEYMAPSLDARQDMVVVEVPRLGKEAAVKAIKEWGQP 120
Query: 121 KSQITHLIFCSLVGVDMPGADYQLTKMLGLNPSVKRVMLYFQGCYIGATAIRMAKDFAEN 180
KS+ITHLI C+ GVDMPGADYQLTK+LGL P VKR M+Y QG + G T +R+AKD AEN
Sbjct: 121 KSKITHLIVCTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGXFAGGTVLRLAKDLAEN 180
Query: 181 NP----------------------------GQALFGDGAAALIIGANPDTTLSEKPLFQI 212
N GQALFGDGAAALI+G++P + EKP+F++
Sbjct: 181 NKGARVLVVCSEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEI-EKPIFEM 239
Query: 213 VSGAQTILPGSDSDVAGQFREMGLTVHLSKNVATVVSENIEKCLDEAFSPFGIKDWNSLF 272
V AQTI P S+ + RE GLT HL K+V +VS+NI K L EAF P GI D+NS+F
Sbjct: 240 VWTAQTIAPDSEGAIDLHLREAGLTFHLLKDVPGIVSKNITKALVEAFEPLGISDYNSIF 299
Query: 273 WIVQPGGPAIVNQIEAKLGLKQQKLSATRHVLSEYGNMGGVSVFFILDEIRRKSAEEGKV 332
WI PGGPAI++Q+E KL LK +K++ATR VLSEYGNM V FILDE+R+KS + G
Sbjct: 300 WIAHPGGPAILDQVEQKLALKPEKMNATREVLSEYGNMSSACVLFILDEMRKKSTQNGLK 359
Query: 333 TTGEGLEWGVMFGIGAGVTVDTVVLRS 359
TTGEGLEWGV+FG G G+T++TVVLRS
Sbjct: 360 TTGEGLEWGVLFGFGPGLTIETVVLRS 386
>pdb|1I8B|A Chain A, Chalcone Synthase (g256f)
pdb|1I8B|B Chain B, Chalcone Synthase (g256f)
Length = 389
Score = 460 bits (1184), Expect = e-130, Method: Compositional matrix adjust.
Identities = 222/387 (57%), Positives = 281/387 (72%), Gaps = 29/387 (7%)
Query: 1 MEKVKDGKNQQQGGGLATILAIGTANPPNCIYQADYPDYYFRVTNSDHMTLLKQKFKRIC 60
M V + + Q+ G ATILAIGTANP NC+ Q+ YPD+YF++TNS+H T LK+KF+R+C
Sbjct: 1 MVSVSEIRKAQRAEGPATILAIGTANPANCVEQSTYPDFYFKITNSEHKTELKEKFQRMC 60
Query: 61 EKSNVKKRYFHVTEDILKKNPNICAYDGSSLDSRQDILVREVPKLGEEAATKAIKEWGQS 120
+KS +K+RY ++TE+ILK+NPN+C Y SLD+RQD++V EVP+LG+EAA KAIKEWGQ
Sbjct: 61 DKSMIKRRYMYLTEEILKENPNVCEYMAPSLDARQDMVVVEVPRLGKEAAVKAIKEWGQP 120
Query: 121 KSQITHLIFCSLVGVDMPGADYQLTKMLGLNPSVKRVMLYFQGCYIGATAIRMAKDFAEN 180
KS+ITHLI C+ GVDMPGADYQLTK+LGL P VKR M+Y QG + G T +R+AKD AEN
Sbjct: 121 KSKITHLIVCTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGXFAGGTVLRLAKDLAEN 180
Query: 181 NP----------------------------GQALFGDGAAALIIGANPDTTLSEKPLFQI 212
N GQALFGDGAAALI+G++P + EKP+F++
Sbjct: 181 NKGARVLVVCSEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEI-EKPIFEM 239
Query: 213 VSGAQTILPGSDSDVAGQFREMGLTVHLSKNVATVVSENIEKCLDEAFSPFGIKDWNSLF 272
V AQTI P S+ + RE GLT HL K+V +VS+NI K L EAF P GI D+NS+F
Sbjct: 240 VWTAQTIAPDSEGAIDFHLREAGLTFHLLKDVPGIVSKNITKALVEAFEPLGISDYNSIF 299
Query: 273 WIVQPGGPAIVNQIEAKLGLKQQKLSATRHVLSEYGNMGGVSVFFILDEIRRKSAEEGKV 332
WI PGGPAI++Q+E KL LK +K++ATR VLSEYGNM V FILDE+R+KS + G
Sbjct: 300 WIAHPGGPAILDQVEQKLALKPEKMNATREVLSEYGNMSSACVLFILDEMRKKSTQNGLK 359
Query: 333 TTGEGLEWGVMFGIGAGVTVDTVVLRS 359
TTGEGLEWGV+FG G G+T++TVVLRS
Sbjct: 360 TTGEGLEWGVLFGFGPGLTIETVVLRS 386
>pdb|1JWX|A Chain A, Chalcone Synthase--F215s Mutant
Length = 389
Score = 460 bits (1184), Expect = e-130, Method: Compositional matrix adjust.
Identities = 222/387 (57%), Positives = 281/387 (72%), Gaps = 29/387 (7%)
Query: 1 MEKVKDGKNQQQGGGLATILAIGTANPPNCIYQADYPDYYFRVTNSDHMTLLKQKFKRIC 60
M V + + Q+ G ATILAIGTANP NC+ Q+ YPD+YF++TNS+H T LK+KF+R+C
Sbjct: 1 MVSVSEIRKAQRAEGPATILAIGTANPANCVEQSTYPDFYFKITNSEHKTELKEKFQRMC 60
Query: 61 EKSNVKKRYFHVTEDILKKNPNICAYDGSSLDSRQDILVREVPKLGEEAATKAIKEWGQS 120
+KS +K+RY ++TE+ILK+NPN+C Y SLD+RQD++V EVP+LG+EAA KAIKEWGQ
Sbjct: 61 DKSMIKRRYMYLTEEILKENPNVCEYMAPSLDARQDMVVVEVPRLGKEAAVKAIKEWGQP 120
Query: 121 KSQITHLIFCSLVGVDMPGADYQLTKMLGLNPSVKRVMLYFQGCYIGATAIRMAKDFAEN 180
KS+ITHLI C+ GVDMPGADYQLTK+LGL P VKR M+Y QG + G T +R+AKD AEN
Sbjct: 121 KSKITHLIVCTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGXFAGGTVLRLAKDLAEN 180
Query: 181 NP----------------------------GQALFGDGAAALIIGANPDTTLSEKPLFQI 212
N GQAL GDGAAALI+G++P + EKP+F++
Sbjct: 181 NKGARVLVVCSEVTAVTFRGPSDTHLDSLVGQALSGDGAAALIVGSDPVPEI-EKPIFEM 239
Query: 213 VSGAQTILPGSDSDVAGQFREMGLTVHLSKNVATVVSENIEKCLDEAFSPFGIKDWNSLF 272
V AQTI P S+ + G RE GLT HL K+V +VS+NI K L EAF P GI D+NS+F
Sbjct: 240 VWTAQTIAPDSEGAIDGHLREAGLTFHLLKDVPGIVSKNITKALVEAFEPLGISDYNSIF 299
Query: 273 WIVQPGGPAIVNQIEAKLGLKQQKLSATRHVLSEYGNMGGVSVFFILDEIRRKSAEEGKV 332
WI PGGPAI++Q+E KL LK +K++ATR VLSEYGNM V FILDE+R+KS + G
Sbjct: 300 WIAHPGGPAILDQVEQKLALKPEKMNATREVLSEYGNMSSACVLFILDEMRKKSTQNGLK 359
Query: 333 TTGEGLEWGVMFGIGAGVTVDTVVLRS 359
TTGEGLEWGV+FG G G+T++TVVLRS
Sbjct: 360 TTGEGLEWGVLFGFGPGLTIETVVLRS 386
>pdb|1D6H|A Chain A, Chalone Synthase (N336a Mutant Complexed With Coa)
Length = 387
Score = 460 bits (1184), Expect = e-130, Method: Compositional matrix adjust.
Identities = 221/384 (57%), Positives = 280/384 (72%), Gaps = 29/384 (7%)
Query: 4 VKDGKNQQQGGGLATILAIGTANPPNCIYQADYPDYYFRVTNSDHMTLLKQKFKRICEKS 63
V + + Q+ G ATILAIGTANP NC+ Q+ YPD+YF++TNS+H T LK+KF+R+C+KS
Sbjct: 2 VSEIRKAQRAEGPATILAIGTANPANCVEQSTYPDFYFKITNSEHKTELKEKFQRMCDKS 61
Query: 64 NVKKRYFHVTEDILKKNPNICAYDGSSLDSRQDILVREVPKLGEEAATKAIKEWGQSKSQ 123
+K+RY ++TE+ILK+NPN+C Y SLD+RQD++V EVP+LG+EAA KAIKEWGQ KS+
Sbjct: 62 MIKRRYMYLTEEILKENPNVCEYMAPSLDARQDMVVVEVPRLGKEAAVKAIKEWGQPKSK 121
Query: 124 ITHLIFCSLVGVDMPGADYQLTKMLGLNPSVKRVMLYFQGCYIGATAIRMAKDFAENNP- 182
ITHLI C+ GVDMPGADYQLTK+LGL P VKR M+Y QG + G T +R+AKD AENN
Sbjct: 122 ITHLIVCTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGXFAGGTVLRLAKDLAENNKG 181
Query: 183 ---------------------------GQALFGDGAAALIIGANPDTTLSEKPLFQIVSG 215
GQALFGDGAAALI+G++P + EKP+F++V
Sbjct: 182 ARVLVVCSEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEI-EKPIFEMVWT 240
Query: 216 AQTILPGSDSDVAGQFREMGLTVHLSKNVATVVSENIEKCLDEAFSPFGIKDWNSLFWIV 275
AQTI P S+ + G RE GLT HL K+V +VS+NI K L EAF P GI D+NS+FWI
Sbjct: 241 AQTIAPDSEGAIDGHLREAGLTFHLLKDVPGIVSKNITKALVEAFEPLGISDYNSIFWIA 300
Query: 276 QPGGPAIVNQIEAKLGLKQQKLSATRHVLSEYGNMGGVSVFFILDEIRRKSAEEGKVTTG 335
PGGPAI++Q+E KL LK +K++ATR VLSEYG M V FILDE+R+KS + G TTG
Sbjct: 301 HPGGPAILDQVEQKLALKPEKMNATREVLSEYGAMSSACVLFILDEMRKKSTQNGLKTTG 360
Query: 336 EGLEWGVMFGIGAGVTVDTVVLRS 359
EGLEWGV+FG G G+T++TVVLRS
Sbjct: 361 EGLEWGVLFGFGPGLTIETVVLRS 384
>pdb|1U0V|A Chain A, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Of Specificity Of Type Iii Polyketide
Synthases: 18xchs Structure
pdb|1U0V|B Chain B, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Of Specificity Of Type Iii Polyketide
Synthases: 18xchs Structure
pdb|1U0W|A Chain A, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: 18xchs+resveratrol Structure
pdb|1U0W|B Chain B, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: 18xchs+resveratrol Structure
pdb|1U0W|C Chain C, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: 18xchs+resveratrol Structure
pdb|1U0W|D Chain D, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: 18xchs+resveratrol Structure
Length = 393
Score = 452 bits (1163), Expect = e-127, Method: Compositional matrix adjust.
Identities = 218/387 (56%), Positives = 276/387 (71%), Gaps = 29/387 (7%)
Query: 1 MEKVKDGKNQQQGGGLATILAIGTANPPNCIYQADYPDYYFRVTNSDHMTLLKQKFKRIC 60
M V + + Q+ G ATILAIGTANP NC+ Q+ YPD+YF++TNS+H T LK+KF+R+C
Sbjct: 5 MVSVSEIRKAQRAEGPATILAIGTANPANCVEQSTYPDFYFKITNSEHKTELKEKFQRMC 64
Query: 61 EKSNVKKRYFHVTEDILKKNPNICAYDGSSLDSRQDILVREVPKLGEEAATKAIKEWGQS 120
+KS +K+RY ++TE+ILK+NPN+C Y SLD+RQ +L EVP+LG+EAA KAIKEWGQ
Sbjct: 65 DKSMIKRRYMYLTEEILKENPNVCEYMAPSLDARQAMLAMEVPRLGKEAAVKAIKEWGQP 124
Query: 121 KSQITHLIFCSLVGVDMPGADYQLTKMLGLNPSVKRVMLYFQGCYIGATAIRMAKDFAEN 180
KS+ITHLI CS D+PGADYQLTK+LGL P VKRV ++ GC+ G T +R+AKD AEN
Sbjct: 125 KSKITHLIVCSTTTPDLPGADYQLTKLLGLRPYVKRVGVFQHGCFAGGTVLRLAKDLAEN 184
Query: 181 NP----------------------------GQALFGDGAAALIIGANPDTTLSEKPLFQI 212
N GQALFGDGAAALI+G++P + EKP+F++
Sbjct: 185 NKGARVLVVCSEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEI-EKPIFEM 243
Query: 213 VSGAQTILPGSDSDVAGQFREMGLTVHLSKNVATVVSENIEKCLDEAFSPFGIKDWNSLF 272
V AQTI P S+ + G RE GLT HL V +VS+NI K L EAF P GI D+NS+F
Sbjct: 244 VWTAQTIAPDSEGAIDGHLREAGLTFHLKGAVPDIVSKNITKALVEAFEPLGISDYNSIF 303
Query: 273 WIVQPGGPAIVNQIEAKLGLKQQKLSATRHVLSEYGNMGGVSVFFILDEIRRKSAEEGKV 332
WI PGGPAI++Q+E KL LK +K++ATR VLSEYGNM V FILDE+R+KS + G
Sbjct: 304 WIAHPGGPAILDQVEQKLALKPEKMNATREVLSEYGNMSSACVLFILDEMRKKSTQNGLK 363
Query: 333 TTGEGLEWGVMFGIGAGVTVDTVVLRS 359
TTGEGLEWGV+FG G G+T++TVVLRS
Sbjct: 364 TTGEGLEWGVLFGFGPGLTIETVVLRS 390
>pdb|1Z1E|A Chain A, Crystal Structure Of Stilbene Synthase From Arachis
Hypogaea
pdb|1Z1F|A Chain A, Crystal Structure Of Stilbene Synthase From Arachis
Hypogaea (Resveratrol-Bound Form)
Length = 390
Score = 447 bits (1151), Expect = e-126, Method: Compositional matrix adjust.
Identities = 211/388 (54%), Positives = 278/388 (71%), Gaps = 29/388 (7%)
Query: 1 MEKVKDGKNQQQGGGLATILAIGTANPPNCIYQADYPDYYFRVTNSDHMTLLKQKFKRIC 60
M V + Q+ G AT+LAIGTANPPNC+ Q+ Y DYYFRVTNS+HMT LK+KF+RIC
Sbjct: 2 MVSVSGIRKVQRAEGPATVLAIGTANPPNCVDQSTYADYYFRVTNSEHMTDLKKKFQRIC 61
Query: 61 EKSNVKKRYFHVTEDILKKNPNICAYDGSSLDSRQDILVREVPKLGEEAATKAIKEWGQS 120
E++ +K R+ ++TE+ILK+NPN+CAY SLD+R+D+++REVP++G+EAATKAIKEWGQ
Sbjct: 62 ERTQIKNRHMYLTEEILKENPNMCAYKAPSLDAREDMMIREVPRVGKEAATKAIKEWGQP 121
Query: 121 KSQITHLIFCSLVGVDMPGADYQLTKMLGLNPSVKRVMLYFQGCYIGATAIRMAKDFAEN 180
S+ITHLIFC+ GV +PG DY+L +LGL+PSVKR M+Y QGC+ G T +R+AKD AEN
Sbjct: 122 MSKITHLIFCTTSGVALPGVDYELIVLLGLDPSVKRYMMYHQGCFAGGTVLRLAKDLAEN 181
Query: 181 NP----------------------------GQALFGDGAAALIIGANPDTTLSEKPLFQI 212
N GQALF DGAAA+IIG++P + E PLF+I
Sbjct: 182 NKDARVLIVCSENTSVTFRGPSETDMDSLVGQALFADGAAAIIIGSDPVPEV-ENPLFEI 240
Query: 213 VSGAQTILPGSDSDVAGQFREMGLTVHLSKNVATVVSENIEKCLDEAFSPFGIKDWNSLF 272
VS Q ++P S + G RE+GLT +L+K+V ++S+NI L +AF P GI D+NS+F
Sbjct: 241 VSTDQQLVPNSHGAIGGLLREVGLTFYLNKSVPDIISQNINDALSKAFDPLGISDYNSIF 300
Query: 273 WIVQPGGPAIVNQIEAKLGLKQQKLSATRHVLSEYGNMGGVSVFFILDEIRRKSAEEGKV 332
WI PGG AI++Q+E K+ LK +K+ ATR VLS YGNM VFFI+D +R+KS E G
Sbjct: 301 WIAHPGGRAILDQVEEKVNLKPEKMKATRDVLSNYGNMSSACVFFIMDLMRKKSLEAGLK 360
Query: 333 TTGEGLEWGVMFGIGAGVTVDTVVLRSF 360
TTGEGL+WGV+FG G G+T++TVVLRS
Sbjct: 361 TTGEGLDWGVLFGFGPGLTIETVVLRSM 388
>pdb|1QLV|A Chain A, Pyrone Synthase (Pys) From Gerbera Hybrida
pdb|1QLV|B Chain B, Pyrone Synthase (Pys) From Gerbera Hybrida
pdb|1EE0|A Chain A, 2-Pyrone Synthase Complexed With Acetoacetyl-Coa
pdb|1EE0|B Chain B, 2-Pyrone Synthase Complexed With Acetoacetyl-Coa
Length = 402
Score = 442 bits (1136), Expect = e-124, Method: Compositional matrix adjust.
Identities = 215/373 (57%), Positives = 268/373 (71%), Gaps = 29/373 (7%)
Query: 15 GLATILAIGTANPPNCIYQADYPDYYFRVTNSDHMTLLKQKFKRICEKSNVKKRYFHVTE 74
GLATILAIGTA PPNC+ QADY DYYFRVT S+HM LK+KFKRICEK+ +KKRY +TE
Sbjct: 20 GLATILAIGTATPPNCVAQADYADYYFRVTKSEHMVDLKEKFKRICEKTAIKKRYLALTE 79
Query: 75 DILKKNPNICAYDGSSLDSRQDILVREVPKLGEEAATKAIKEWGQSKSQITHLIFCSLVG 134
D L++NP +C + SL++RQD++V VP LG+EAA KAI EWG KS+ITHLIFC+ G
Sbjct: 80 DYLQENPTMCEFMAPSLNARQDLVVTGVPMLGKEAAVKAIDEWGLPKSKITHLIFCTTAG 139
Query: 135 VDMPGADYQLTKMLGLNPSVKRVMLYFQGCYIGATAIRMAKDFAENNPG----------- 183
VDMPGADYQL K+LGL+PSVKR MLY QG G T +R+AKD AENN G
Sbjct: 140 VDMPGADYQLVKLLGLSPSVKRYMLYQQGXAAGGTVLRLAKDLAENNKGSRVLIVCSEIT 199
Query: 184 -----------------QALFGDGAAALIIGANPDTTLSEKPLFQIVSGAQTILPGSDSD 226
QALFGDGAAALI+G+ P + E+P+F+IVS QTILP ++
Sbjct: 200 AILFHGPNENHLDSLVAQALFGDGAAALIVGSGPHLAV-ERPIFEIVSTDQTILPDTEKA 258
Query: 227 VAGQFREMGLTVHLSKNVATVVSENIEKCLDEAFSPFGIKDWNSLFWIVQPGGPAIVNQI 286
+ RE GLT L ++V +V++NIE ++A SP GI DWNS+FW+V PGG AI++Q+
Sbjct: 259 MKLHLREGGLTFQLHRDVPLMVAKNIENAAEKALSPLGITDWNSVFWMVHPGGRAILDQV 318
Query: 287 EAKLGLKQQKLSATRHVLSEYGNMGGVSVFFILDEIRRKSAEEGKVTTGEGLEWGVMFGI 346
E KL LK+ KL A+RHVLSEYGN+ V FI+DE+R++S EGK TTGEGL+ GV+FG
Sbjct: 319 ERKLNLKEDKLRASRHVLSEYGNLISACVLFIIDEVRKRSMAEGKSTTGEGLDCGVLFGF 378
Query: 347 GAGVTVDTVVLRS 359
G G+TV+TVVLRS
Sbjct: 379 GPGMTVETVVLRS 391
>pdb|1U0U|A Chain A, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: Pine Stilbene Synthase Structure
pdb|1U0U|B Chain B, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: Pine Stilbene Synthase Structure
pdb|1U0U|C Chain C, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: Pine Stilbene Synthase Structure
pdb|1U0U|D Chain D, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: Pine Stilbene Synthase Structure
pdb|1U0U|E Chain E, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: Pine Stilbene Synthase Structure
pdb|1U0U|F Chain F, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: Pine Stilbene Synthase Structure
Length = 397
Score = 422 bits (1086), Expect = e-118, Method: Compositional matrix adjust.
Identities = 207/383 (54%), Positives = 269/383 (70%), Gaps = 30/383 (7%)
Query: 8 KNQQQGGGLATILAIGTANPPNCIYQADYPDYYFRVTNSDHMTLLKQKFKRICEKSNVKK 67
+ Q+ G A+ILAIGTANPPN + Q+ YPD+YFR+T ++H T LK KFKRICE+S +K+
Sbjct: 14 RKLQRADGFASILAIGTANPPNAVDQSTYPDFYFRITGNEHNTELKDKFKRICERSAIKQ 73
Query: 68 RYFHVTEDILKKNPNICAY-DGSSLDSRQDILVREVPKLGEEAATKAIKEWGQSKSQITH 126
RY ++TE+ILKKNP++CA+ + SLD+RQ +L EVP+L +EAA KAI+EWGQSKS ITH
Sbjct: 74 RYMYLTEEILKKNPDVCAFVEVPSLDARQAMLAMEVPRLAKEAAEKAIQEWGQSKSGITH 133
Query: 127 LIFCSLVGVDMPGADYQLTKMLGLNPSVKRVMLYFQGCYIGATAIRMAKDFAENNP---- 182
LIFCS D+PGAD+++ K+LGL+PSVKRV ++ GC+ G T +RMAKD AENN
Sbjct: 134 LIFCSTTTPDLPGADFEVAKLLGLHPSVKRVGVFQHGCFAGGTVLRMAKDLAENNRGARV 193
Query: 183 ------------------------GQALFGDGAAALIIGANPDTTLSEKPLFQIVSGAQT 218
GQALFGDGA+ALI+GA+P + EK F+IV AQT
Sbjct: 194 LVICSETTAVTFRGPSETHLDSLVGQALFGDGASALIVGADPIPQV-EKACFEIVWTAQT 252
Query: 219 ILPGSDSDVAGQFREMGLTVHLSKNVATVVSENIEKCLDEAFSPFGIKDWNSLFWIVQPG 278
++P S+ + G+ RE+GLT L V ++S NIE C+ EAFS F I DWN LFW+V PG
Sbjct: 253 VVPNSEGAIGGKVREVGLTFQLKGAVPDLISANIENCMVEAFSQFKISDWNKLFWVVHPG 312
Query: 279 GPAIVNQIEAKLGLKQQKLSATRHVLSEYGNMGGVSVFFILDEIRRKSAEEGKVTTGEGL 338
G AI++++EAKL L KL TRHV+SEYGNM V FILD+ R+ S + G TTGEGL
Sbjct: 313 GRAILDRVEAKLNLDPTKLIPTRHVMSEYGNMSSACVHFILDQTRKASLQNGCSTTGEGL 372
Query: 339 EWGVMFGIGAGVTVDTVVLRSFP 361
E GV+FG G G+T++TVVL+S P
Sbjct: 373 EMGVLFGFGPGLTIETVVLKSVP 395
>pdb|1XES|A Chain A, Crystal Structure Of Stilbene Synthase From Pinus
Sylvestris
pdb|1XES|B Chain B, Crystal Structure Of Stilbene Synthase From Pinus
Sylvestris
pdb|1XES|C Chain C, Crystal Structure Of Stilbene Synthase From Pinus
Sylvestris
pdb|1XES|D Chain D, Crystal Structure Of Stilbene Synthase From Pinus
Sylvestris
pdb|1XET|A Chain A, Crystal Structure Of Stilbene Synthase From Pinus
Sylvestris, Complexed With Methylmalonyl Coa
pdb|1XET|B Chain B, Crystal Structure Of Stilbene Synthase From Pinus
Sylvestris, Complexed With Methylmalonyl Coa
pdb|1XET|C Chain C, Crystal Structure Of Stilbene Synthase From Pinus
Sylvestris, Complexed With Methylmalonyl Coa
pdb|1XET|D Chain D, Crystal Structure Of Stilbene Synthase From Pinus
Sylvestris, Complexed With Methylmalonyl Coa
Length = 413
Score = 422 bits (1085), Expect = e-118, Method: Compositional matrix adjust.
Identities = 207/383 (54%), Positives = 269/383 (70%), Gaps = 30/383 (7%)
Query: 8 KNQQQGGGLATILAIGTANPPNCIYQADYPDYYFRVTNSDHMTLLKQKFKRICEKSNVKK 67
+ Q+ G A+ILAIGTANPPN + Q+ YPD+YFR+T ++H T LK KFKRICE+S +K+
Sbjct: 30 RKLQRADGFASILAIGTANPPNAVDQSTYPDFYFRITGNEHNTELKDKFKRICERSAIKQ 89
Query: 68 RYFHVTEDILKKNPNICAY-DGSSLDSRQDILVREVPKLGEEAATKAIKEWGQSKSQITH 126
RY ++TE+ILKKNP++CA+ + SLD+RQ +L EVP+L +EAA KAI+EWGQSKS ITH
Sbjct: 90 RYMYLTEEILKKNPDVCAFVEVPSLDARQAMLAMEVPRLAKEAAEKAIQEWGQSKSGITH 149
Query: 127 LIFCSLVGVDMPGADYQLTKMLGLNPSVKRVMLYFQGCYIGATAIRMAKDFAENNP---- 182
LIFCS D+PGAD+++ K+LGL+PSVKRV ++ GC+ G T +RMAKD AENN
Sbjct: 150 LIFCSTTTPDLPGADFEVAKLLGLHPSVKRVGVFQHGCFAGGTVLRMAKDLAENNRGARV 209
Query: 183 ------------------------GQALFGDGAAALIIGANPDTTLSEKPLFQIVSGAQT 218
GQALFGDGA+ALI+GA+P + EK F+IV AQT
Sbjct: 210 LVICSETTAVTFRGPSETHLDSLVGQALFGDGASALIVGADPIPQV-EKACFEIVWTAQT 268
Query: 219 ILPGSDSDVAGQFREMGLTVHLSKNVATVVSENIEKCLDEAFSPFGIKDWNSLFWIVQPG 278
++P S+ + G+ RE+GLT L V ++S NIE C+ EAFS F I DWN LFW+V PG
Sbjct: 269 VVPNSEGAIGGKVREVGLTFQLKGAVPDLISANIENCMVEAFSQFKISDWNKLFWVVHPG 328
Query: 279 GPAIVNQIEAKLGLKQQKLSATRHVLSEYGNMGGVSVFFILDEIRRKSAEEGKVTTGEGL 338
G AI++++EAKL L KL TRHV+SEYGNM V FILD+ R+ S + G TTGEGL
Sbjct: 329 GRAILDRVEAKLNLDPTKLIPTRHVMSEYGNMSSACVHFILDQTRKASLQNGCSTTGEGL 388
Query: 339 EWGVMFGIGAGVTVDTVVLRSFP 361
E GV+FG G G+T++TVVL+S P
Sbjct: 389 EMGVLFGFGPGLTIETVVLKSVP 411
>pdb|3OV2|A Chain A, Curcumin Synthase 1 From Curcuma Longa
pdb|3OV2|B Chain B, Curcumin Synthase 1 From Curcuma Longa
pdb|3OV2|C Chain C, Curcumin Synthase 1 From Curcuma Longa
pdb|3OV2|D Chain D, Curcumin Synthase 1 From Curcuma Longa
Length = 393
Score = 405 bits (1042), Expect = e-113, Method: Compositional matrix adjust.
Identities = 183/383 (47%), Positives = 261/383 (68%), Gaps = 29/383 (7%)
Query: 8 KNQQQGGGLATILAIGTANPPNCIYQADYPDYYFRVTNSDHMTLLKQKFKRICEKSNVKK 67
+ +Q+ G ATI+AIGTA PPN Q+ +PD+YFRVTNSD LK+KF+R+CEK+ VKK
Sbjct: 8 RREQRAQGPATIMAIGTATPPNLYEQSTFPDFYFRVTNSDDKQELKKKFRRMCEKTMVKK 67
Query: 68 RYFHVTEDILKKNPNICAYDGSSLDSRQDILVREVPKLGEEAATKAIKEWGQSKSQITHL 127
RY H+TE+ILK+ P +C+Y +S D RQDI+V E+P+L +EAA KAIKEWG+ KS+ITHL
Sbjct: 68 RYLHLTEEILKERPKLCSYKEASFDDRQDIVVEEIPRLAKEAAEKAIKEWGRPKSEITHL 127
Query: 128 IFCSLVGVDMPGADYQLTKMLGLNPSVKRVMLYFQGCYIGATAIRMAKDFAENN------ 181
+FCS+ G+DMPGADY+L +LGL +V R+M+Y Q C++GA +R+AKD AENN
Sbjct: 128 VFCSISGIDMPGADYRLATLLGLPLTVNRLMIYSQACHMGAAMLRIAKDLAENNRGARVL 187
Query: 182 ----------------------PGQALFGDGAAALIIGANPDTTLSEKPLFQIVSGAQTI 219
GQA FGDGA A+++GA+P + EKP+++I + Q
Sbjct: 188 VVACEITVLSFRGPNEGDFEALAGQAGFGDGAGAVVVGADPLEGI-EKPIYEIAAAMQET 246
Query: 220 LPGSDSDVAGQFREMGLTVHLSKNVATVVSENIEKCLDEAFSPFGIKDWNSLFWIVQPGG 279
+ S V G R G T + + ++++N+ + L+ A +P G+++WN +FW+ PG
Sbjct: 247 VAESQGAVGGHLRAFGWTFYFLNQLPAIIADNLGRSLERALAPLGVREWNDVFWVAHPGN 306
Query: 280 PAIVNQIEAKLGLKQQKLSATRHVLSEYGNMGGVSVFFILDEIRRKSAEEGKVTTGEGLE 339
AI++ IEAKL L KLS RHV +EYGNM +V+F++DE+R++SA EG+ TTG+GL+
Sbjct: 307 WAIIDAIEAKLQLSPDKLSTARHVFTEYGNMQSATVYFVMDELRKRSAVEGRSTTGDGLQ 366
Query: 340 WGVMFGIGAGVTVDTVVLRSFPF 362
WGV+ G G G++++TVVLRS P
Sbjct: 367 WGVLLGFGPGLSIETVVLRSMPL 389
>pdb|3OV3|A Chain A, G211f Mutant Of Curcumin Synthase 1 From Curcuma Longa
pdb|3OV3|B Chain B, G211f Mutant Of Curcumin Synthase 1 From Curcuma Longa
pdb|3OV3|C Chain C, G211f Mutant Of Curcumin Synthase 1 From Curcuma Longa
pdb|3OV3|D Chain D, G211f Mutant Of Curcumin Synthase 1 From Curcuma Longa
Length = 393
Score = 405 bits (1040), Expect = e-113, Method: Compositional matrix adjust.
Identities = 183/383 (47%), Positives = 261/383 (68%), Gaps = 29/383 (7%)
Query: 8 KNQQQGGGLATILAIGTANPPNCIYQADYPDYYFRVTNSDHMTLLKQKFKRICEKSNVKK 67
+ +Q+ G ATI+AIGTA PPN Q+ +PD+YFRVTNSD LK+KF+R+CEK+ VKK
Sbjct: 8 RREQRAQGPATIMAIGTATPPNLYEQSTFPDFYFRVTNSDDKQELKKKFRRMCEKTMVKK 67
Query: 68 RYFHVTEDILKKNPNICAYDGSSLDSRQDILVREVPKLGEEAATKAIKEWGQSKSQITHL 127
RY H+TE+ILK+ P +C+Y +S D RQDI+V E+P+L +EAA KAIKEWG+ KS+ITHL
Sbjct: 68 RYLHLTEEILKERPKLCSYKEASFDDRQDIVVEEIPRLAKEAAEKAIKEWGRPKSEITHL 127
Query: 128 IFCSLVGVDMPGADYQLTKMLGLNPSVKRVMLYFQGCYIGATAIRMAKDFAENNPG---- 183
+FCS+ G+DMPGADY+L +LGL +V R+M+Y Q C++GA +R+AKD AENN G
Sbjct: 128 VFCSISGIDMPGADYRLATLLGLPLTVNRLMIYSQACHMGAAMLRIAKDLAENNRGARVL 187
Query: 184 ------------------------QALFGDGAAALIIGANPDTTLSEKPLFQIVSGAQTI 219
QA FGDGA A+++GA+P + EKP+++I + Q
Sbjct: 188 VVACEITVLSFRGPNEGDFEALAFQAGFGDGAGAVVVGADPLEGI-EKPIYEIAAAMQET 246
Query: 220 LPGSDSDVAGQFREMGLTVHLSKNVATVVSENIEKCLDEAFSPFGIKDWNSLFWIVQPGG 279
+ S V G R G T + + ++++N+ + L+ A +P G+++WN +FW+ PG
Sbjct: 247 VAESQGAVGGHLRAFGWTFYFLNQLPAIIADNLGRSLERALAPLGVREWNDVFWVAHPGN 306
Query: 280 PAIVNQIEAKLGLKQQKLSATRHVLSEYGNMGGVSVFFILDEIRRKSAEEGKVTTGEGLE 339
AI++ IEAKL L KLS RHV +EYGNM +V+F++DE+R++SA EG+ TTG+GL+
Sbjct: 307 WAIIDAIEAKLQLSPDKLSTARHVFTEYGNMQSATVYFVMDELRKRSAVEGRSTTGDGLQ 366
Query: 340 WGVMFGIGAGVTVDTVVLRSFPF 362
WGV+ G G G++++TVVLRS P
Sbjct: 367 WGVLLGFGPGLSIETVVLRSMPL 389
>pdb|3AWJ|A Chain A, Crystal Structure Of The Huperzia Serrata Polyketide
Synthase 1 Complexed With Coa-Sh
pdb|3AWJ|B Chain B, Crystal Structure Of The Huperzia Serrata Polyketide
Synthase 1 Complexed With Coa-Sh
pdb|3AWK|A Chain A, Crystal Structure Of The Polyketide Synthase 1 From
Huperzia Serrata
Length = 402
Score = 404 bits (1039), Expect = e-113, Method: Compositional matrix adjust.
Identities = 200/373 (53%), Positives = 254/373 (68%), Gaps = 29/373 (7%)
Query: 15 GLATILAIGTANPPNCIYQADYPDYYFRVTNSDHMTLLKQKFKRICEKSNVKKRYFHVTE 74
G ATILAIGT+NP N Q+ YPD++F VTN + T LK+KF+RIC+KS +KKR+FH+T+
Sbjct: 28 GPATILAIGTSNPTNIFEQSTYPDFFFDVTNCNDKTELKKKFQRICDKSGIKKRHFHLTD 87
Query: 75 DILKKNPNICAYDGSSLDSRQDILVREVPKLGEEAATKAIKEWGQSKSQITHLIFCSLVG 134
+IL+KNP+IC + +SLD RQDI V EVPKL +EAA AIK+WGQ KS+ITHL+F + G
Sbjct: 88 EILRKNPSICKFKEASLDPRQDIAVLEVPKLAKEAAISAIKQWGQPKSKITHLVFATTSG 147
Query: 135 VDMPGADYQLTKMLGLNPSVKRVMLYFQGCYIGATAIRMAKDFAENNP------------ 182
VDMPGAD+QL K+LGL P+VKRVMLY QG Y GAT +R+AKD AENN
Sbjct: 148 VDMPGADFQLAKLLGLRPTVKRVMLYQQGXYAGATVLRVAKDLAENNKGARVLVACSEVT 207
Query: 183 ----------------GQALFGDGAAALIIGANPDTTLSEKPLFQIVSGAQTILPGSDSD 226
G ALFGDGAAALI+G++P EKPLF+I + +LP SD
Sbjct: 208 AVTFRAPSETHLDGLVGSALFGDGAAALIVGSDP-VPQEEKPLFEIHWAGEAVLPDSDGA 266
Query: 227 VAGQFREMGLTVHLSKNVATVVSENIEKCLDEAFSPFGIKDWNSLFWIVQPGGPAIVNQI 286
+ G RE GL HL K+V ++S+NI+K L E +N +FW V PGGPAI++QI
Sbjct: 267 INGHLREAGLIFHLLKDVPGLISKNIDKVLAEPLEYVHFPSYNDMFWAVHPGGPAILDQI 326
Query: 287 EAKLGLKQQKLSATRHVLSEYGNMGGVSVFFILDEIRRKSAEEGKVTTGEGLEWGVMFGI 346
EAKLGL K+ A+R VL+ YGNM SV F+LD+IR+ S E TTGEG EWG + G
Sbjct: 327 EAKLGLSTDKMQASRDVLASYGNMSSASVLFVLDQIRKNSEELHLPTTGEGFEWGFVIGF 386
Query: 347 GAGVTVDTVVLRS 359
G G+TV+T++LRS
Sbjct: 387 GPGLTVETLLLRS 399
>pdb|2D51|A Chain A, Pentaketide Chromone Synthase (M207g Mutant)
pdb|2D51|B Chain B, Pentaketide Chromone Synthase (M207g Mutant)
pdb|2D52|A Chain A, Pentaketide Chromone Synthase (M207g Mutant Complexed With
Coa)
pdb|2D52|B Chain B, Pentaketide Chromone Synthase (M207g Mutant Complexed With
Coa)
Length = 406
Score = 384 bits (985), Expect = e-107, Method: Compositional matrix adjust.
Identities = 194/393 (49%), Positives = 253/393 (64%), Gaps = 32/393 (8%)
Query: 1 MEKVKDGKNQQQGGGLATILAIGTANPPNCIYQADYPDYYFRVTNSDHMTLLKQKFKRIC 60
ME V+ + Q+ G AT++AIGTA+PP+ Q Y D YFR TNS+H LK+KF IC
Sbjct: 14 MEDVQGIRKAQKADGTATVMAIGTAHPPHIFPQDTYADVYFRATNSEHKVELKKKFDHIC 73
Query: 61 EKSNVKKRYFHVTEDILKKNPNICAYDGSSLDSRQDILVREVPKLGEEAATKAIKEWGQS 120
+K+ + KRYF+ E+ LKK PNI +YD SL+ RQDI V VP LG EAA KAI+EWG+
Sbjct: 74 KKTMIGKRYFNYDEEFLKKYPNITSYDEPSLNDRQDICVPGVPALGTEAAVKAIEEWGRP 133
Query: 121 KSQITHLIFCSLVGVDMPGADYQLTKMLGLNPSVKRVMLYFQGCYIGATAIRMAKDFAEN 180
KS+ITHL+FC+ GVDMP AD+Q K+LGL+ +V + +Y QG Y G T +R AKD AEN
Sbjct: 134 KSEITHLVFCTSCGVDMPSADFQCAKLLGLHANVNKYCIYMQGXYAGGTVMRYAKDLAEN 193
Query: 181 NPGQ----------------------------ALFGDGAAALIIGANPDTTLSEKPLFQI 212
N G +LFGDGAAALIIG++P + EKP+F+I
Sbjct: 194 NRGARVLVVCAELTIMGLRAPNETHLDNAIGISLFGDGAAALIIGSDPIIGV-EKPMFEI 252
Query: 213 VSGAQTILPGSDSDVAGQFREMGLTVHLSKNVATVVSENIEKCLDEAFSPFGI---KDWN 269
V QT++P ++ + RE G+ +LSK +S N+E CL + F GI +DWN
Sbjct: 253 VCTKQTVIPNTEDVIHLHLRETGMMFYLSKGSPMTISNNVEACLIDVFKSVGITPPEDWN 312
Query: 270 SLFWIVQPGGPAIVNQIEAKLGLKQQKLSATRHVLSEYGNMGGVSVFFILDEIRRKSAEE 329
SLFWI PGG AI++Q+EAKL L+ +K A R VL +YGNM SV +ILDE+RRKSA +
Sbjct: 313 SLFWIPHPGGRAILDQVEAKLKLRPEKFRAARTVLWDYGNMVSASVGYILDEMRRKSAAK 372
Query: 330 GKVTTGEGLEWGVMFGIGAGVTVDTVVLRSFPF 362
G T GEGLEWGV+ G G G+TV+T++L S P
Sbjct: 373 GLETYGEGLEWGVLLGFGPGITVETILLHSLPL 405
>pdb|2D3M|A Chain A, Pentaketide Chromone Synthase Complexed With Coenzyme A
pdb|2D3M|B Chain B, Pentaketide Chromone Synthase Complexed With Coenzyme A
Length = 406
Score = 384 bits (985), Expect = e-107, Method: Compositional matrix adjust.
Identities = 194/393 (49%), Positives = 253/393 (64%), Gaps = 32/393 (8%)
Query: 1 MEKVKDGKNQQQGGGLATILAIGTANPPNCIYQADYPDYYFRVTNSDHMTLLKQKFKRIC 60
ME V+ + Q+ G AT++AIGTA+PP+ Q Y D YFR TNS+H LK+KF IC
Sbjct: 14 MEDVQGIRKAQKADGTATVMAIGTAHPPHIFPQDTYADVYFRATNSEHKVELKKKFDHIC 73
Query: 61 EKSNVKKRYFHVTEDILKKNPNICAYDGSSLDSRQDILVREVPKLGEEAATKAIKEWGQS 120
+K+ + KRYF+ E+ LKK PNI +YD SL+ RQDI V VP LG EAA KAI+EWG+
Sbjct: 74 KKTMIGKRYFNYDEEFLKKYPNITSYDEPSLNDRQDICVPGVPALGTEAAVKAIEEWGRP 133
Query: 121 KSQITHLIFCSLVGVDMPGADYQLTKMLGLNPSVKRVMLYFQGCYIGATAIRMAKDFAEN 180
KS+ITHL+FC+ GVDMP AD+Q K+LGL+ +V + +Y QG Y G T +R AKD AEN
Sbjct: 134 KSEITHLVFCTSCGVDMPSADFQCAKLLGLHANVNKYCIYMQGXYAGGTVMRYAKDLAEN 193
Query: 181 NPGQ----------------------------ALFGDGAAALIIGANPDTTLSEKPLFQI 212
N G +LFGDGAAALIIG++P + EKP+F+I
Sbjct: 194 NRGARVLVVCAELTIMMLRAPNETHLDNAIGISLFGDGAAALIIGSDPIIGV-EKPMFEI 252
Query: 213 VSGAQTILPGSDSDVAGQFREMGLTVHLSKNVATVVSENIEKCLDEAFSPFGI---KDWN 269
V QT++P ++ + RE G+ +LSK +S N+E CL + F GI +DWN
Sbjct: 253 VCTKQTVIPNTEDVIHLHLRETGMMFYLSKGSPMTISNNVEACLIDVFKSVGITPPEDWN 312
Query: 270 SLFWIVQPGGPAIVNQIEAKLGLKQQKLSATRHVLSEYGNMGGVSVFFILDEIRRKSAEE 329
SLFWI PGG AI++Q+EAKL L+ +K A R VL +YGNM SV +ILDE+RRKSA +
Sbjct: 313 SLFWIPHPGGRAILDQVEAKLKLRPEKFRAARTVLWDYGNMVSASVGYILDEMRRKSAAK 372
Query: 330 GKVTTGEGLEWGVMFGIGAGVTVDTVVLRSFPF 362
G T GEGLEWGV+ G G G+TV+T++L S P
Sbjct: 373 GLETYGEGLEWGVLLGFGPGITVETILLHSLPL 405
>pdb|2P0U|A Chain A, Crystal Structure Of Marchantia Polymorpha
Stilbenecarboxylate Synthase 2 (Stcs2)
pdb|2P0U|B Chain B, Crystal Structure Of Marchantia Polymorpha
Stilbenecarboxylate Synthase 2 (Stcs2)
Length = 413
Score = 359 bits (922), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 173/379 (45%), Positives = 245/379 (64%), Gaps = 29/379 (7%)
Query: 12 QGGGLATILAIGTANPPNCIYQADYPDYYFRVTNSDHMTLLKQKFKRICEKSNVKKRYFH 71
Q G AT+LA+G A P N QA YPD++F +TNS+ LK KF+RIC+KS +KKR+F+
Sbjct: 30 QAVGPATVLAMGKAVPANVFEQATYPDFFFNITNSNDKPALKAKFQRICDKSGIKKRHFY 89
Query: 72 VTEDILKKNPNICAYDGSSLDSRQDILVREVPKLGEEAATKAIKEWGQSKSQITHLIFCS 131
+ + IL+ NP +C Y +SL+ RQ+I V +VPKL +EA+ AIKEWG+ KS+ITH++ +
Sbjct: 90 LDQKILESNPAMCTYMETSLNCRQEIAVAQVPKLAKEASMNAIKEWGRPKSEITHIVMAT 149
Query: 132 LVGVDMPGADYQLTKMLGLNPSVKRVMLYFQGCYIGATAIRMAKDFAENNP--------- 182
GV+MPGA+ K+LGL P+V+RVM+Y QG + GAT +R+AKD AENN
Sbjct: 150 TSGVNMPGAELATAKLLGLRPNVRRVMMYQQGXFAGATVLRVAKDLAENNAGARVLAICS 209
Query: 183 -------------------GQALFGDGAAALIIGANPDTTLSEKPLFQIVSGAQTILPGS 223
G ALFGDGAAA+I+G++P + E+P++++ + +LP S
Sbjct: 210 EVTAVTFRAPSETHIDGLVGSALFGDGAAAVIVGSDPRPGI-ERPIYEMHWAGEMVLPES 268
Query: 224 DSDVAGQFREMGLTVHLSKNVATVVSENIEKCLDEAFSPFGIKDWNSLFWIVQPGGPAIV 283
D + G E GL HL K+V ++++NI L + + G WN LFW V PGGPAI+
Sbjct: 269 DGAIDGHLTEAGLVFHLLKDVPGLITKNIGGFLKDTKNLVGASSWNELFWAVHPGGPAIL 328
Query: 284 NQIEAKLGLKQQKLSATRHVLSEYGNMGGVSVFFILDEIRRKSAEEGKVTTGEGLEWGVM 343
+Q+EAKL L++ K A+R +LS+YGNM SV F+LD +R +S E K T GEG EWG +
Sbjct: 329 DQVEAKLELEKGKFQASRDILSDYGNMSSASVLFVLDRVRERSLESNKSTFGEGSEWGFL 388
Query: 344 FGIGAGVTVDTVVLRSFPF 362
G G G+TV+T++LR+ P
Sbjct: 389 IGFGPGLTVETLLLRALPL 407
>pdb|3OIT|A Chain A, Crystal Structure Of Curcuminoid Synthase Cus From Oryza
Sativa
pdb|3OIT|B Chain B, Crystal Structure Of Curcuminoid Synthase Cus From Oryza
Sativa
Length = 387
Score = 337 bits (864), Expect = 6e-93, Method: Compositional matrix adjust.
Identities = 177/384 (46%), Positives = 237/384 (61%), Gaps = 36/384 (9%)
Query: 8 KNQQQGGGLATILAIGTANPPNCIYQADYPDYYFRVTNSDHMTLLKQKFKRICEKSNVKK 67
+ Q+ GLA +LAIGTANPPNC+ Q + PD+YFRVTNSDH+T LK KFKRIC++ V++
Sbjct: 2 RRSQRADGLAAVLAIGTANPPNCVTQEEIPDFYFRVTNSDHLTALKDKFKRICQEMGVQR 61
Query: 68 RYFHVTEDILKKNPNICAYDGSSLDSRQDILVREVPKLGEEAATKAIKEWGQSKSQITHL 127
RY H TE++L +P D SLD+R DI VP+L EAA KAI EWG+ + ITHL
Sbjct: 62 RYLHHTEEMLSAHPEFVDRDAPSLDARLDIAADAVPELAAEAAKKAIAEWGRPAADITHL 121
Query: 128 IFCSLVGVDMPGADYQLTKMLGLNPSVKRVMLYFQGCYIGATAIRMAKDFAENNPG---- 183
+ + G +PG D++L +LGL PSV+R ML+ GC+ G A+R+AKD AEN+ G
Sbjct: 122 VVTTNSGAHVPGVDFRLVPLLGLRPSVRRTMLHLNGCFAGCAALRLAKDLAENSRGARVL 181
Query: 184 ------------------------QALFGDGAAALIIGANPDTTLSEKPLFQIVSGAQTI 219
Q LFGDGAAA+I+GA+ D E+PLF+IVS AQTI
Sbjct: 182 VVAAELTLMYFTGPDEGCFRTLLVQGLFGDGAAAVIVGADADDV--ERPLFEIVSAAQTI 239
Query: 220 LPGSDSDVAGQFREMGLTVHLSKNVATVVSENIEKCLDEAF----SPFGIKDWNSLFWIV 275
+P SD + +F E L L + V ++ +N+E+CL + F G WN LFW V
Sbjct: 240 IPESDHALNMRFTERRLDGVLGRQVPGLIGDNVERCLLDMFGPLLGGDGGGGWNDLFWAV 299
Query: 276 QPGGPAIVNQIEAKLGLKQQKLSATRHVLSEYGNMGGVSVFFILDEIRRKSAEEGKVTTG 335
PG I++Q++A LGL+ KL+A+R VLS+YGNM G +V F LDE+RR+ E G
Sbjct: 300 HPGSSTIMDQVDAALGLEPGKLAASRRVLSDYGNMSGATVIFALDELRRQRKE--AAAAG 357
Query: 336 EGLEWGVMFGIGAGVTVDTVVLRS 359
E E GVM G G+TVD ++L +
Sbjct: 358 EWPELGVMMAFGPGMTVDAMLLHA 381
>pdb|3ALE|A Chain A, A Type Iii Polyketide Synthase That Produces
Diarylheptanoid
pdb|3ALE|B Chain B, A Type Iii Polyketide Synthase That Produces
Diarylheptanoid
pdb|3ALE|C Chain C, A Type Iii Polyketide Synthase That Produces
Diarylheptanoid
pdb|3ALE|D Chain D, A Type Iii Polyketide Synthase That Produces
Diarylheptanoid
Length = 416
Score = 337 bits (864), Expect = 7e-93, Method: Compositional matrix adjust.
Identities = 177/384 (46%), Positives = 237/384 (61%), Gaps = 36/384 (9%)
Query: 8 KNQQQGGGLATILAIGTANPPNCIYQADYPDYYFRVTNSDHMTLLKQKFKRICEKSNVKK 67
+ Q+ GLA +LAIGTANPPNC+ Q + PD+YFRVTNSDH+T LK KFKRIC++ V++
Sbjct: 32 RRSQRADGLAAVLAIGTANPPNCVTQEEIPDFYFRVTNSDHLTALKDKFKRICQEMGVQR 91
Query: 68 RYFHVTEDILKKNPNICAYDGSSLDSRQDILVREVPKLGEEAATKAIKEWGQSKSQITHL 127
RY H TE++L +P D SLD+R DI VP+L EAA KAI EWG+ + ITHL
Sbjct: 92 RYLHHTEEMLSAHPEFVDRDAPSLDARLDIAADAVPELAAEAAKKAIAEWGRPAADITHL 151
Query: 128 IFCSLVGVDMPGADYQLTKMLGLNPSVKRVMLYFQGCYIGATAIRMAKDFAENNPG---- 183
+ + G +PG D++L +LGL PSV+R ML+ GC+ G A+R+AKD AEN+ G
Sbjct: 152 VVTTNSGAHVPGVDFRLVPLLGLRPSVRRTMLHLNGCFAGCAALRLAKDLAENSRGARVL 211
Query: 184 ------------------------QALFGDGAAALIIGANPDTTLSEKPLFQIVSGAQTI 219
Q LFGDGAAA+I+GA+ D E+PLF+IVS AQTI
Sbjct: 212 VVAAELTLMYFTGPDEGCFRTLLVQGLFGDGAAAVIVGADADDV--ERPLFEIVSAAQTI 269
Query: 220 LPGSDSDVAGQFREMGLTVHLSKNVATVVSENIEKCLDEAF----SPFGIKDWNSLFWIV 275
+P SD + +F E L L + V ++ +N+E+CL + F G WN LFW V
Sbjct: 270 IPESDHALNMRFTERRLDGVLGRQVPGLIGDNVERCLLDMFGPLLGGDGGGGWNDLFWAV 329
Query: 276 QPGGPAIVNQIEAKLGLKQQKLSATRHVLSEYGNMGGVSVFFILDEIRRKSAEEGKVTTG 335
PG I++Q++A LGL+ KL+A+R VLS+YGNM G +V F LDE+RR+ E G
Sbjct: 330 HPGSSTIMDQVDAALGLEPGKLAASRRVLSDYGNMSGATVIFALDELRRQRKE--AAAAG 387
Query: 336 EGLEWGVMFGIGAGVTVDTVVLRS 359
E E GVM G G+TVD ++L +
Sbjct: 388 EWPELGVMMAFGPGMTVDAMLLHA 411
>pdb|2H84|A Chain A, Crystal Structure Of The C-terminal Type Iii Polyketide
Synthase (pks Iii) Domain Of 'steely1' (a Type I/iii Pks
Hybrid From Dictyostelium)
pdb|2H84|B Chain B, Crystal Structure Of The C-terminal Type Iii Polyketide
Synthase (pks Iii) Domain Of 'steely1' (a Type I/iii Pks
Hybrid From Dictyostelium)
Length = 374
Score = 135 bits (340), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 88/340 (25%), Positives = 154/340 (45%), Gaps = 37/340 (10%)
Query: 19 ILAIGTANPPNCIYQADYPDYYFRVTNSDHMTLLKQKFKRICEKSNVKKRYFHVTEDILK 78
+L IG + P I Q D + T +K KRI E+S +K R H+ D K
Sbjct: 16 VLGIGISVPGEPISQQSLKDSISNDFSDKAET--NEKVKRIFEQSQIKTR--HLVRDYTK 71
Query: 79 KNPNICAYDGSSLDSRQDILVREVPKLGEEAATKAIKEWGQSKSQITHLIFCSLVGVDMP 138
+I ++ + + VP L ++A +A+K+WG K ITH++ + G+ +P
Sbjct: 72 PENSIKFRHLETITDVNNQFKKVVPDLAQQACLRALKDWGGDKGDITHIVSVTSTGIIIP 131
Query: 139 GADYQLTKMLGLNPSVKRVMLYFQGCYIGATAIRMAKDFAENNP---------------- 182
+++L +LGLN V+RV L GC G +++R A A+ +P
Sbjct: 132 DVNFKLIDLLGLNKDVERVSLNLMGCLAGLSSLRTAASLAKASPRNRILVVCTEVCSLHF 191
Query: 183 ----------GQALFGDGAAALIIGANPDTTLSEKPLFQIVSGAQTILPGSDSDVAGQFR 232
++F DG+AA IIG NP + E PL++++ P +++ +
Sbjct: 192 SNTDGGDQMVASSIFADGSAAYIIGCNP--RIEETPLYEVMCSINRSFPNTENAMVWDLE 249
Query: 233 EMGLTVHLSKNVATVVSENIEKCLDEAFSPFGIKDWNSLF-----WIVQPGGPAIVNQIE 287
+ G + L ++ V+ IE +D ++ ++ +++ GG +I+ IE
Sbjct: 250 KEGWNLGLDASIPIVIGSGIEAFVDTLLDKAKLQTSTAISAKDCEFLIHTGGKSILMNIE 309
Query: 288 AKLGLKQQKLSATRHVLSEYGNMGGVSVFFILDEIRRKSA 327
LG+ ++ T V YGNM SV F++D R+ +
Sbjct: 310 NSLGIDPKQTKNTWDVYHAYGNMSSASVIFVMDHARKSKS 349
>pdb|1TEE|A Chain A, Crystal Structure Of C205f Mutant Of Pks18 From
Mycobacterium Tuberculosis
pdb|1TEE|B Chain B, Crystal Structure Of C205f Mutant Of Pks18 From
Mycobacterium Tuberculosis
pdb|1TEE|C Chain C, Crystal Structure Of C205f Mutant Of Pks18 From
Mycobacterium Tuberculosis
pdb|1TEE|D Chain D, Crystal Structure Of C205f Mutant Of Pks18 From
Mycobacterium Tuberculosis
Length = 393
Score = 118 bits (296), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 87/364 (23%), Positives = 156/364 (42%), Gaps = 37/364 (10%)
Query: 16 LATILAIGTANPPNCIYQADYPDYYFRVTNSDHMTLLKQKFKRICEKSNVKKRYFHVTED 75
+A I + T P + Q+D D RV +++ R+ +KS + R V D
Sbjct: 32 VAVIEGLATGTPRRVVNQSDAAD---RVAELFLDPGQRERIPRVYQKSRITTRRMAV--D 86
Query: 76 ILKKNPNICAYDGSSLDSRQDILVREVPKLGEEAATKAIKEWGQSKSQITHLIFCSLVGV 135
L ++ + +++ R + L + + +A+ ++I L+ + G
Sbjct: 87 PLDAKFDVFRREPATIRDRMHLFYEHAVPLAVDVSKRALAGLPYRAAEIGLLVLATSTGF 146
Query: 136 DMPGADYQLTKMLGLNPSVKRVMLYFQGCYIGATAIRMAKDFAENNPG------------ 183
PG D + K LGL+PS+ RV++ F GC A+ A ++ +P
Sbjct: 147 IAPGVDVAIVKELGLSPSISRVVVNFMGCAAAMNALGTATNYVRAHPAMKALVVCIELFS 206
Query: 184 --------------QALFGDGAAALIIGANPDTTLSEKPLFQIVSGAQTILPGSDSDVAG 229
+LFGDG AAL+IGA+ E + S +L ++ +
Sbjct: 207 VNAVFADDINDVVIHSLFGDGCAALVIGASQVQEKLEPGKVVVRSSFSQLLDNTEDGIVL 266
Query: 230 QFREMGLTVHLSKNVATVVSENIEKCLDEAFSPFGIKDWNSLFWIVQPGGPAIVNQIEAK 289
G+T LS+N+ + + + E G++ + W + PGGP I+ Q
Sbjct: 267 GVNHNGITCELSENLPGYIFSGVAPVVTEMLWDNGLQISDIDLWAIHPGGPKIIEQSVRS 326
Query: 290 LGLKQQKLSATRHVLSEYGNMGGVSVFFILDEIRRKSAEEGKVTTGEGLEWGVMFGIGAG 349
LG+ + + + VL+ +GNM VS+ F+L+ + +++ ++T GV F G G
Sbjct: 327 LGISAELAAQSWDVLARFGNMLSVSLIFVLETMVQQAESAKAIST------GVAFAFGPG 380
Query: 350 VTVD 353
VTV+
Sbjct: 381 VTVE 384
>pdb|1TED|A Chain A, Crystal Structure Of A Type Iii Polyketide Synthase Pks18
From Mycobacterium Tuberculosis
pdb|1TED|B Chain B, Crystal Structure Of A Type Iii Polyketide Synthase Pks18
From Mycobacterium Tuberculosis
pdb|1TED|C Chain C, Crystal Structure Of A Type Iii Polyketide Synthase Pks18
From Mycobacterium Tuberculosis
pdb|1TED|D Chain D, Crystal Structure Of A Type Iii Polyketide Synthase Pks18
From Mycobacterium Tuberculosis
Length = 393
Score = 118 bits (295), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 87/364 (23%), Positives = 156/364 (42%), Gaps = 37/364 (10%)
Query: 16 LATILAIGTANPPNCIYQADYPDYYFRVTNSDHMTLLKQKFKRICEKSNVKKRYFHVTED 75
+A I + T P + Q+D D RV +++ R+ +KS + R V D
Sbjct: 32 VAVIEGLATGTPRRVVNQSDAAD---RVAELFLDPGQRERIPRVYQKSRITTRRMAV--D 86
Query: 76 ILKKNPNICAYDGSSLDSRQDILVREVPKLGEEAATKAIKEWGQSKSQITHLIFCSLVGV 135
L ++ + +++ R + L + + +A+ ++I L+ + G
Sbjct: 87 PLDAKFDVFRREPATIRDRMHLFYEHAVPLAVDVSKRALAGLPYRAAEIGLLVLATSTGF 146
Query: 136 DMPGADYQLTKMLGLNPSVKRVMLYFQGCYIGATAIRMAKDFAENNPG------------ 183
PG D + K LGL+PS+ RV++ F GC A+ A ++ +P
Sbjct: 147 IAPGVDVAIVKELGLSPSISRVVVNFMGCAAAMNALGTATNYVRAHPAMKALVVCIELCS 206
Query: 184 --------------QALFGDGAAALIIGANPDTTLSEKPLFQIVSGAQTILPGSDSDVAG 229
+LFGDG AAL+IGA+ E + S +L ++ +
Sbjct: 207 VNAVFADDINDVVIHSLFGDGCAALVIGASQVQEKLEPGKVVVRSSFSQLLDNTEDGIVL 266
Query: 230 QFREMGLTVHLSKNVATVVSENIEKCLDEAFSPFGIKDWNSLFWIVQPGGPAIVNQIEAK 289
G+T LS+N+ + + + E G++ + W + PGGP I+ Q
Sbjct: 267 GVNHNGITCELSENLPGYIFSGVAPVVTEMLWDNGLQISDIDLWAIHPGGPKIIEQSVRS 326
Query: 290 LGLKQQKLSATRHVLSEYGNMGGVSVFFILDEIRRKSAEEGKVTTGEGLEWGVMFGIGAG 349
LG+ + + + VL+ +GNM VS+ F+L+ + +++ ++T GV F G G
Sbjct: 327 LGISAELAAQSWDVLARFGNMLSVSLIFVLETMVQQAESAKAIST------GVAFAFGPG 380
Query: 350 VTVD 353
VTV+
Sbjct: 381 VTVE 384
>pdb|3E1H|A Chain A, Crystal Structure Of A Type Iii Polyketide Synthase
Pksiiinc From Neurospora Crassa
pdb|3E1H|B Chain B, Crystal Structure Of A Type Iii Polyketide Synthase
Pksiiinc From Neurospora Crassa
Length = 465
Score = 87.4 bits (215), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 86/386 (22%), Positives = 155/386 (40%), Gaps = 64/386 (16%)
Query: 36 YPDYYFRVTNSDHMTLLKQKFKRICEKSNVKK-----RYFHVTEDILKKNPN---ICAYD 87
YP Y D + +L +++ E +KK RY + + NP+ + +
Sbjct: 41 YPPYSL---GPDAIDILSKRYHP--ESPAMKKVLAINRYTGIDQRSSIGNPDHPLVNKPN 95
Query: 88 GSSLDSRQDILVREVPKLGEEAATKAIKEWGQSKSQITHLIFCSLVGVDMPGADYQLTKM 147
++ ++ + + L EA+ KA+ E +QITH++ + PG D+ + K
Sbjct: 96 PPTVKELHEVFMSDGVPLAVEASRKAMAEARLVPAQITHMVSTTCTDSANPGYDHYVAKE 155
Query: 148 LGLNPSVKRVMLYFQGCYIGATAIRMAKDFA----------------------------- 178
LGL+ +++V+L+ GC G A+R A +
Sbjct: 156 LGLSDRLEKVLLHGIGCSGGLAALRTAANLCLGHTARGKPARILVLALEVSTTMVRSELE 215
Query: 179 ------ENNPGQALFGDGAAALIIGANPDTTLSEKPLFQIVSGAQTILPGSDSDVAGQFR 232
E G ALF D A+A+I+ + ++ ++ ++P S+ D+
Sbjct: 216 SIDALQETRIGIALFSDCASAVILSNGIGEAPGKPAIYDLLGWENRVIPDSEHDLGFDVD 275
Query: 233 EMGLTVHLSKNVATVVSENIEKCLDEAFS------PFGIKDWNSLFWIVQPGGPAIVNQI 286
MG V LS V + +++ + S P + W + PGG I++
Sbjct: 276 PMGWKVVLSPRVPVLAKASLQPTYADLLSSLQDQLPSSYQKPADFDWAMHPGGATILSGA 335
Query: 287 EAKLGLKQQKLSATRHVLSEYGNMGGVSVFFILDEIRRKS----AEEGKVTTGEGLEWGV 342
E+ +GL + + A+ +GN ++F +L+ +R K A GKV E+ V
Sbjct: 336 ESAMGLTPEHMRASYDRYINHGNSSSATIFSVLNRLREKDMDALAPGGKVK-----EYVV 390
Query: 343 MFGIGAGVTVDTVVL-RSFPFPTVTT 367
G G+ V+ +L R P TT
Sbjct: 391 GCAFGPGINVEMCMLKRRMNAPARTT 416
>pdb|3EUQ|A Chain A, X-Ray Structural Of A Type Iii Pentaketide Synthase From
Neurospora Crassa
pdb|3EUQ|B Chain B, X-Ray Structural Of A Type Iii Pentaketide Synthase From
Neurospora Crassa
pdb|3EUQ|C Chain C, X-Ray Structural Of A Type Iii Pentaketide Synthase From
Neurospora Crassa
pdb|3EUQ|D Chain D, X-Ray Structural Of A Type Iii Pentaketide Synthase From
Neurospora Crassa
Length = 379
Score = 85.9 bits (211), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 82/376 (21%), Positives = 152/376 (40%), Gaps = 63/376 (16%)
Query: 36 YPDYYFRVTNSDHMTLLKQKFKRICEKSNVKK-----RYFHVTEDILKKNPN---ICAYD 87
YP Y D + +L +++ E +KK RY + + NP+ + +
Sbjct: 12 YPPYSL---GPDAIDILSKRYHP--ESPAMKKVLAINRYTGIDQRSSIGNPDHPLVNKPN 66
Query: 88 GSSLDSRQDILVREVPKLGEEAATKAIKEWGQSKSQITHLIFCSLVGVDMPGADYQLTKM 147
++ ++ + + L EA+ KA+ E +QITH++ + PG D+ + K
Sbjct: 67 PPTVKELHEVFMSDGVPLAVEASRKAMAEARLVPAQITHMVSTTCTDSANPGYDHYVAKE 126
Query: 148 LGLNPSVKRVMLYFQGCYIGATAIRMAKDFA----------------------------- 178
LGL+ +++V+L+ G G A+R A +
Sbjct: 127 LGLSDRLEKVLLHGIGXSGGLAALRTAANLCLGHTARGKPARILVLALEVSTTMVRSELE 186
Query: 179 ------ENNPGQALFGDGAAALIIGANPDTTLSEKPLFQIVSGAQTILPGSDSDVAGQFR 232
E G ALF D A+A+I+ + ++ ++ ++P S+ D+ G
Sbjct: 187 SIDALQETRIGIALFSDCASAVILSNGIGEAPGKPAIYDLLGWENRVIPDSEHDLGGDVD 246
Query: 233 EMGLTVHLSKNVATVVSENIEKCLDEAFS------PFGIKDWNSLFWIVQPGGPAIVNQI 286
MG V LS V + +++ + S P + W + PGG I++
Sbjct: 247 PMGWKVVLSPRVPVLAKASLQPTYADLLSSLQDQLPSSYQKPADFDWAMHPGGATILSGA 306
Query: 287 EAKLGLKQQKLSATRHVLSEYGNMGGVSVFFILDEIRRKS----AEEGKVTTGEGLEWGV 342
E+ +GL + + A+ +GN ++F +L+ +R K A GKV E+ V
Sbjct: 307 ESAMGLTPEHMRASYDRYINHGNSSSATIFSVLNRLREKDMDALAPGGKVK-----EYVV 361
Query: 343 MFGIGAGVTVDTVVLR 358
G G+ V+ +L+
Sbjct: 362 GCAFGPGINVEMCMLK 377
>pdb|3EUO|A Chain A, Crystal Structure Of A Fungal Type Iii Polyketide
Synthase, Oras
pdb|3EUO|B Chain B, Crystal Structure Of A Fungal Type Iii Polyketide
Synthase, Oras
pdb|3EUT|A Chain A, X-Ray Crystal Structure Of A Type Iii Pentaketide Synthase
From Neurospora Crassa
pdb|3EUT|B Chain B, X-Ray Crystal Structure Of A Type Iii Pentaketide Synthase
From Neurospora Crassa
pdb|3EUT|C Chain C, X-Ray Crystal Structure Of A Type Iii Pentaketide Synthase
From Neurospora Crassa
pdb|3EUT|D Chain D, X-Ray Crystal Structure Of A Type Iii Pentaketide Synthase
From Neurospora Crassa
Length = 379
Score = 82.4 bits (202), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 81/376 (21%), Positives = 151/376 (40%), Gaps = 63/376 (16%)
Query: 36 YPDYYFRVTNSDHMTLLKQKFKRICEKSNVKK-----RYFHVTEDILKKNPN---ICAYD 87
YP Y D + +L +++ E +KK RY + + NP+ + +
Sbjct: 12 YPPYSL---GPDAIDILSKRYHP--ESPAMKKVLAINRYTGIDQRSSIGNPDHPLVNKPN 66
Query: 88 GSSLDSRQDILVREVPKLGEEAATKAIKEWGQSKSQITHLIFCSLVGVDMPGADYQLTKM 147
++ ++ + + L EA+ KA+ E +QITH++ + PG D+ + K
Sbjct: 67 PPTVKELHEVFMSDGVPLAVEASRKAMAEARLVPAQITHMVSTTCTDSANPGYDHYVAKE 126
Query: 148 LGLNPSVKRVMLYFQGCYIGATAIRMAKDFA----------------------------- 178
LGL+ +++V+L+ G G A+R A +
Sbjct: 127 LGLSDRLEKVLLHGIGXSGGLAALRTAANLCLGHTARGKPARILVLALEVSTTMVRSELE 186
Query: 179 ------ENNPGQALFGDGAAALIIGANPDTTLSEKPLFQIVSGAQTILPGSDSDVAGQFR 232
E G ALF D A+A+I+ + ++ ++ ++P S+ D+
Sbjct: 187 SIDALQETRIGIALFSDCASAVILSNGIGEAPGKPAIYDLLGWENRVIPDSEHDLGFDVD 246
Query: 233 EMGLTVHLSKNVATVVSENIEKCLDEAFS------PFGIKDWNSLFWIVQPGGPAIVNQI 286
MG V LS V + +++ + S P + W + PGG I++
Sbjct: 247 PMGWKVVLSPRVPVLAKASLQPTYADLLSSLQDQLPSSYQKPADFDWAMHPGGATILSGA 306
Query: 287 EAKLGLKQQKLSATRHVLSEYGNMGGVSVFFILDEIRRKS----AEEGKVTTGEGLEWGV 342
E+ +GL + + A+ +GN ++F +L+ +R K A GKV E+ V
Sbjct: 307 ESAMGLTPEHMRASYDRYINHGNSSSATIFSVLNRLREKDMDALAPGGKVK-----EYVV 361
Query: 343 MFGIGAGVTVDTVVLR 358
G G+ V+ +L+
Sbjct: 362 GCAFGPGINVEMCMLK 377
>pdb|1U0M|A Chain A, Crystal Structure Of 1,3,6,8-Tetrahydroxynaphthalene
Synthase (Thns) From Streptomyces Coelicolor A3(2): A
Bacterial Type Iii Polyketide Synthase (Pks) Provides
Insights Into Enzymatic Control Of Reactive Polyketide
Intermediates
pdb|1U0M|B Chain B, Crystal Structure Of 1,3,6,8-Tetrahydroxynaphthalene
Synthase (Thns) From Streptomyces Coelicolor A3(2): A
Bacterial Type Iii Polyketide Synthase (Pks) Provides
Insights Into Enzymatic Control Of Reactive Polyketide
Intermediates
Length = 382
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 81/369 (21%), Positives = 135/369 (36%), Gaps = 53/369 (14%)
Query: 13 GGGLATILAIGTANPPNCIYQADYPDYYFRVTNSDHMTLLKQKFKRICEKSNVKKRYF-H 71
G G L + + P + + R ++DH L R+ E + V+ R+
Sbjct: 5 GSGFMATLCRPSVSVPEHVITMEETLELARRRHTDHPQL--PLALRLIENTGVRTRHIVQ 62
Query: 72 VTEDILKKNPNICAYDGSSLDSRQDILVREVPKLGEEAATKAIKEWGQSKSQITHLIFCS 131
ED L+ + R + RE +A+ + + I +I+ S
Sbjct: 63 PIEDTLEH---------PGFEDRNKVYEREAKSRVPAVIQRALDDAELLATDIDVIIYVS 113
Query: 132 LVGVDMPGADYQLTKMLGLNPSVKRVMLYFQGCYIGATAIRMAKDFAENNP--------- 182
G MP L +G + + +++ + GC G AI A DF P
Sbjct: 114 CTGFMMPSLTAWLINEMGFDSTTRQIPIAQLGCAAGGAAINRAHDFCTAYPEANALIVAC 173
Query: 183 ------------------GQALFGDGAAALIIGANPDTTLSEKPLFQIVSGAQTILPGSD 224
LFGDG AA ++ T + ++ ++P ++
Sbjct: 174 EFCSLCYQPTDLGVGSLLCNGLFGDGIAAAVVRGRGGTGV------RLERNGSYLIPKTE 227
Query: 225 SDVAGQFREMGLTVHLSKNVATVVSENIEKCLDEAFSPFGIKDWNSLFWIVQPGGPAIVN 284
+ + G L K V + E + L E G + F+IV GGP I++
Sbjct: 228 DWIMYDVKATGFHFLLDKRVPATM-EPLAPALKELAGEHGWDASDLDFYIVHAGGPRILD 286
Query: 285 QIEAKLGLKQQKLSATRHVLSEYGNMGGVSVFFILDEIRRKSAEEGKVTTGEGLEWGVMF 344
+ L + +R L+EYGN+ V LD +RR +EG V G G++
Sbjct: 287 DLSTFLEVDPHAFRFSRATLTEYGNIASAVV---LDALRRLF-DEGGVEEG---ARGLLA 339
Query: 345 GIGAGVTVD 353
G G G+T +
Sbjct: 340 GFGPGITAE 348
>pdb|2EBD|A Chain A, Crystal Structure Of 3-oxoacyl-[acyl-carrier-protein]
Synthase Iii From Aquifex Aeolicus Vf5
pdb|2EBD|B Chain B, Crystal Structure Of 3-oxoacyl-[acyl-carrier-protein]
Synthase Iii From Aquifex Aeolicus Vf5
Length = 309
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 82/193 (42%), Gaps = 20/193 (10%)
Query: 166 IGATAIRMAKDFAENNPGQALFGDGAAALIIGANPDTTLSEKPLFQIVSGAQTILPGSDS 225
IGA + A D+ E+ LFGDGA A+++ + D + + +L +
Sbjct: 136 IGAEKLSEAVDW-EDRSTCVLFGDGAGAVVVTRSEDKSDILATRMYAEGSLEELL---HA 191
Query: 226 DVAGQFREMGLTVHLSKNVATVVSENIEKCLDEAFSPFGIKDWNSLFWIVQPGGPAIVNQ 285
D G R G + + V ++E+ E G+K I I+N
Sbjct: 192 DNCGYIRMKG------RELFKVAVRSMEEVCREVLEKAGVKPEEVSLVIPHQANVRIINA 245
Query: 286 IEAKLGLKQQKLSATRHVLSEYGNMGGVSVFFILDEIRRKSAEEGKVTTGEGLEWGVMFG 345
+ KL + ++K+ + +YGN S+ L E + +EGKV G+ + +M
Sbjct: 246 LAEKLNIPKEKVFVN---IQKYGNTSAASIPIALHE----AIKEGKVKRGDLI---LMTA 295
Query: 346 IGAGVTVDTVVLR 358
+G G+T V+LR
Sbjct: 296 MGGGLTWGAVLLR 308
>pdb|3IL9|A Chain A, Structure Of E. Coli Fabh
pdb|3IL9|B Chain B, Structure Of E. Coli Fabh
Length = 340
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 66/272 (24%), Positives = 109/272 (40%), Gaps = 43/272 (15%)
Query: 102 VPKLGEEAATKAIKEWGQSKSQITHLIFCSLVGVD-MPGADYQLTKMLGLN--PSVK--- 155
V +G EAAT+AI+ G K QI ++ + P A Q+ MLG+ P+
Sbjct: 74 VSTMGFEAATRAIEMAGIEKDQIGLIVVATTSATHAFPSAACQIQSMLGIKGCPAFDVAA 133
Query: 156 -----RVMLYFQGCYIGATAIR---------MAKDFAENNPGQAL-FGDGAAALIIGANP 200
L Y+ + A++ +A+ + G + FGDGA A ++ A+
Sbjct: 134 AXAGFTYALSVADQYVKSGAVKYALVVGSDVLARTCDPTDRGTIIIFGDGAGAAVLAASE 193
Query: 201 DTTLSEKPLFQIVS-GAQTILPGSDSDVAGQFREMGLTVHLSKNVATVVSENIEKCLDEA 259
+ + L S G LP +D + LT+ ++ V+E + +DE
Sbjct: 194 EPGIISTHLHADGSYGELLTLPNADR--VNPENSIHLTMAGNEVFKVAVTE-LAHIVDET 250
Query: 260 FSPFGIKDWNSLFWIV-QPGGPAIVNQIEAKLGLKQQKLSATRHVLSEYGNMGGVSVFFI 318
+ + D + L W+V I++ KLG+ + T L +GN SV
Sbjct: 251 LAANNL-DRSQLDWLVPHQANLRIISATAKKLGMSMDNVVVT---LDRHGNTSAASVPCA 306
Query: 319 LDEIRRKSAEEGKVTTGE---------GLEWG 341
LDE R +G++ G+ G WG
Sbjct: 307 LDEAVR----DGRIKPGQLVLLEAFGGGFTWG 334
>pdb|1HN9|A Chain A, Crystal Structure Of Beta-Ketoacyl-Acp Synthase Iii
pdb|1HN9|B Chain B, Crystal Structure Of Beta-Ketoacyl-Acp Synthase Iii
pdb|1HND|A Chain A, Crystal Structure Of Beta-ketoacyl-acp Synthase Iii-coa
Complex
pdb|1HNJ|A Chain A, Crystal Structure Of Beta-Ketoacyl-Acp Synthase Iii +
Malonyl-Coa
pdb|1HNK|A Chain A, Crystal Structure Of Beta-Ketoacyl-Acp Synthase Iii, Apo
Tetragonal Form
pdb|2EFT|A Chain A, Methanethiol-Cys 112 Inhibition Complex Of E. Coli
Ketoacyl Synthase Iii (Fabh) And Coenzyme A (High
Concentration (1.7mm) Soak)
pdb|2EFT|B Chain B, Methanethiol-Cys 112 Inhibition Complex Of E. Coli
Ketoacyl Synthase Iii (Fabh) And Coenzyme A (High
Concentration (1.7mm) Soak)
pdb|2GYO|A Chain A, Methanethiol-Cys 112 Inhibition Complex Of E. Coli
Ketoacyl Synthase Iii (Fabh) And Coenzyme A
pdb|2GYO|B Chain B, Methanethiol-Cys 112 Inhibition Complex Of E. Coli
Ketoacyl Synthase Iii (Fabh) And Coenzyme A
Length = 317
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 66/268 (24%), Positives = 110/268 (41%), Gaps = 35/268 (13%)
Query: 102 VPKLGEEAATKAIKEWGQSKSQITHLIFCSLVGVD-MPGADYQLTKMLGLN--PSVK--- 155
V +G EAAT+AI+ G K QI ++ + P A Q+ MLG+ P+
Sbjct: 51 VSTMGFEAATRAIEMAGIEKDQIGLIVVATTSATHAFPSAACQIQSMLGIKGCPAFDVAA 110
Query: 156 -----RVMLYFQGCYIGATAIR---------MAKDFAENNPGQAL-FGDGAAALIIGANP 200
L Y+ + A++ +A+ + G + FGDGA A ++ A+
Sbjct: 111 ACAGFTYALSVADQYVKSGAVKYALVVGSDVLARTCDPTDRGTIIIFGDGAGAAVLAASE 170
Query: 201 DTTLSEKPLFQIVS-GAQTILPGSDSDVAGQFREMGLTVHLSKNVATVVSENIEKCLDEA 259
+ + L S G LP ++D + LT+ ++ V+E + +DE
Sbjct: 171 EPGIISTHLHADGSYGELLTLP--NADRVNPENSIHLTMAGNEVFKVAVTE-LAHIVDET 227
Query: 260 FSPFGIKDWNSLFWIV-QPGGPAIVNQIEAKLGLKQQKLSATRHVLSEYGNMGGVSVFFI 318
+ + D + L W+V I++ KLG+ + T L +GN SV
Sbjct: 228 LAANNL-DRSQLDWLVPHQANLRIISATAKKLGMSMDNVVVT---LDRHGNTSAASVPCA 283
Query: 319 LDE-IRRKSAEEGKVTT----GEGLEWG 341
LDE +R + G++ G G WG
Sbjct: 284 LDEAVRDGRIKPGQLVLLEAFGGGFTWG 311
>pdb|1MZS|A Chain A, Crystal Structure Of Beta-Ketoacyl-Acp Synthase Iii With
Bound Dichlorobenzyloxy-Indole-Carboxylic Acid Inhibitor
Length = 317
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 66/268 (24%), Positives = 110/268 (41%), Gaps = 35/268 (13%)
Query: 102 VPKLGEEAATKAIKEWGQSKSQITHLIFCSLVGVD-MPGADYQLTKMLGLN--PSVK--- 155
V +G EAAT+AI+ G K QI ++ + P A Q+ MLG+ P+
Sbjct: 51 VSTMGFEAATRAIEMAGIEKDQIGLIVVATTSATHAFPSAACQIQSMLGIKGCPAFDVAA 110
Query: 156 -----RVMLYFQGCYIGATAIR---------MAKDFAENNPGQAL-FGDGAAALIIGANP 200
L Y+ + A++ +A+ + G + FGDGA A ++ A+
Sbjct: 111 AXAGFTYALSVADQYVKSGAVKYALVVGSDVLARTCDPTDRGTIIIFGDGAGAAVLAASE 170
Query: 201 DTTLSEKPLFQIVS-GAQTILPGSDSDVAGQFREMGLTVHLSKNVATVVSENIEKCLDEA 259
+ + L S G LP ++D + LT+ ++ V+E + +DE
Sbjct: 171 EPGIISTHLHADGSYGELLTLP--NADRVNPENSIHLTMAGNEVFKVAVTE-LAHIVDET 227
Query: 260 FSPFGIKDWNSLFWIV-QPGGPAIVNQIEAKLGLKQQKLSATRHVLSEYGNMGGVSVFFI 318
+ + D + L W+V I++ KLG+ + T L +GN SV
Sbjct: 228 LAANNL-DRSQLDWLVPHQANLRIISATAKKLGMSMDNVVVT---LDRHGNTSAASVPCA 283
Query: 319 LDE-IRRKSAEEGKVTT----GEGLEWG 341
LDE +R + G++ G G WG
Sbjct: 284 LDEAVRDGRIKPGQLVLLEAFGGGFTWG 311
>pdb|4DFE|A Chain A, Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein]
Synthase Iii From Burkholderia Xenovorans
pdb|4DFE|B Chain B, Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein]
Synthase Iii From Burkholderia Xenovorans
pdb|4DFE|C Chain C, Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein]
Synthase Iii From Burkholderia Xenovorans
pdb|4DFE|D Chain D, Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein]
Synthase Iii From Burkholderia Xenovorans
Length = 333
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 81/194 (41%), Gaps = 14/194 (7%)
Query: 166 IGATAIRMAKDFAENNPGQALFGDGAAALIIGANPDTTLSEKPLFQIVSGAQTILPGSDS 225
IGA DF + LFGDGA A+I+ A+ + + L G+ + + +
Sbjct: 152 IGAETFSRILDFKDRTTC-VLFGDGAGAVILQASDEPGVLASALH--ADGSHSNILCTPG 208
Query: 226 DVAGQFREMGLTVHLSKNVATVVSENI-EKCLDEAFSPFGIKDWNSLFWIVQPGGPAIVN 284
+V G +H+ ++ N+ EK EA + + I I+
Sbjct: 209 NVNGGVVSGSAFLHMDGQAVFKLAVNVLEKVAVEALEKANLSAEQIDWLIPHQANIRIMQ 268
Query: 285 QIEAKLGLKQQKLSATRHVLSEYGNMGGVSVFFILDEIRRKSAEEGKVTTGEGLEWGVMF 344
KLGL Q+++ T + E+GN S+ LD R +G++ G+ + ++
Sbjct: 269 STCRKLGLPQERMIVT---VGEHGNTSAASIPLALDVAVR----DGRIKRGQNV---LIE 318
Query: 345 GIGAGVTVDTVVLR 358
G+G G T V+R
Sbjct: 319 GVGGGFTWGASVIR 332
>pdb|1HNH|A Chain A, Crystal Structure Of Beta-Ketoacyl-Acp Synthase Iii +
Degraded Form Of Acetyl-Coa
Length = 317
Score = 36.6 bits (83), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 65/272 (23%), Positives = 106/272 (38%), Gaps = 43/272 (15%)
Query: 102 VPKLGEEAATKAIKEWGQSKSQITHLIFCSLVGVD-MPGADYQLTKMLGLN--PSVK--- 155
V G EAAT+AI+ G K QI ++ + P A Q+ LG+ P+
Sbjct: 51 VSTXGFEAATRAIEXAGIEKDQIGLIVVATTSATHAFPSAACQIQSXLGIKGCPAFDVAA 110
Query: 156 -----RVMLYFQGCYIGATAIR---------MAKDFAENNPGQAL-FGDGAAALIIGANP 200
L Y+ + A++ +A+ + G + FGDGA A ++ A+
Sbjct: 111 AXAGFTYALSVADQYVKSGAVKYALVVGSDVLARTCDPTDRGTIIIFGDGAGAAVLAASE 170
Query: 201 DTTLSEKPLFQIVS-GAQTILPGSDSDVAGQFREMGLTVHLSKNVATVVSENIEKCLDEA 259
+ + L S G LP ++D + LT ++ V+E + +DE
Sbjct: 171 EPGIISTHLHADGSYGELLTLP--NADRVNPENSIHLTXAGNEVFKVAVTE-LAHIVDET 227
Query: 260 FSPFGIKDWNSLFWIV-QPGGPAIVNQIEAKLGLKQQKLSATRHVLSEYGNMGGVSVFFI 318
+ + D + L W+V I++ KLG + T L +GN SV
Sbjct: 228 LAANNL-DRSQLDWLVPHQANLRIISATAKKLGXSXDNVVVT---LDRHGNTSAASVPCA 283
Query: 319 LDEIRRKSAEEGKVTTGE---------GLEWG 341
LDE R +G++ G+ G WG
Sbjct: 284 LDEAVR----DGRIKPGQLVLLEAFGGGFTWG 311
>pdb|1EBL|A Chain A, The 1.8 A Crystal Structure And Active Site Architecture
Of Beta-Ketoacyl-[acyl Carrier Protein] Synthase Iii
(Fabh) From Escherichia Coli
pdb|1EBL|B Chain B, The 1.8 A Crystal Structure And Active Site Architecture
Of Beta-Ketoacyl-[acyl Carrier Protein] Synthase Iii
(Fabh) From Escherichia Coli
Length = 317
Score = 36.2 bits (82), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 65/272 (23%), Positives = 105/272 (38%), Gaps = 43/272 (15%)
Query: 102 VPKLGEEAATKAIKEWGQSKSQITHLIFCSLVGVD-MPGADYQLTKMLGLN--PSVK--- 155
V G EAAT+AI+ G K QI ++ + P A Q+ LG+ P+
Sbjct: 51 VSTXGFEAATRAIEXAGIEKDQIGLIVVATTSATHAFPSAACQIQSXLGIKGCPAFDVAA 110
Query: 156 -----RVMLYFQGCYIGATAIR---------MAKDFAENNPGQAL-FGDGAAALIIGANP 200
L Y+ + A++ +A+ + G + FGDGA A ++ A+
Sbjct: 111 ACAGFTYALSVADQYVKSGAVKYALVVGSDVLARTCDPTDRGTIIIFGDGAGAAVLAASE 170
Query: 201 DTTLSEKPLFQIVS-GAQTILPGSDSDVAGQFREMGLTVHLSKNVATVVSENIEKCLDEA 259
+ + L S G LP ++D + LT ++ V+E + +DE
Sbjct: 171 EPGIISTHLHADGSYGELLTLP--NADRVNPENSIHLTXAGNEVFKVAVTE-LAHIVDET 227
Query: 260 FSPFGIKDWNSLFWIV-QPGGPAIVNQIEAKLGLKQQKLSATRHVLSEYGNMGGVSVFFI 318
+ D + L W+V I++ KLG + T L +GN SV
Sbjct: 228 LAANN-NDRSQLDWLVPHQANLRIISATAKKLGXSXDNVVVT---LDRHGNTSAASVPCA 283
Query: 319 LDEIRRKSAEEGKVTTGE---------GLEWG 341
LDE R +G++ G+ G WG
Sbjct: 284 LDEAVR----DGRIKPGQLVLLEAFGGGFTWG 311
>pdb|1XPK|A Chain A, Crystal Structure Of Staphylococcus Aureus Hmg-Coa
Synthase With Hmg- Coa And With Acetoacetyl-Coa And
Acetylated Cysteine
pdb|1XPK|D Chain D, Crystal Structure Of Staphylococcus Aureus Hmg-Coa
Synthase With Hmg- Coa And With Acetoacetyl-Coa And
Acetylated Cysteine
Length = 388
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 31/77 (40%), Gaps = 19/77 (24%)
Query: 143 QLTKMLGLNPSVKRVMLYFQGCYIGATAIRMAKDFAENNPGQALF--------------- 187
Q+ +LG+ P + + CY AI++AKD+ P + +
Sbjct: 90 QIHNLLGIQPFARCFEMKEAXCYAATPAIQLAKDYLATRPNEKVLVIATDTARYGLNSGG 149
Query: 188 ----GDGAAALIIGANP 200
G GA A++I NP
Sbjct: 150 EPTQGAGAVAMVIAHNP 166
>pdb|1XPL|A Chain A, Crystal Structure Of Staphylococcus Aureus Hmg-coa
Synthase With Acetoacetyl-coa And Acetylated Cysteine
pdb|1XPL|B Chain B, Crystal Structure Of Staphylococcus Aureus Hmg-coa
Synthase With Acetoacetyl-coa And Acetylated Cysteine
pdb|1XPL|C Chain C, Crystal Structure Of Staphylococcus Aureus Hmg-coa
Synthase With Acetoacetyl-coa And Acetylated Cysteine
pdb|1XPL|D Chain D, Crystal Structure Of Staphylococcus Aureus Hmg-coa
Synthase With Acetoacetyl-coa And Acetylated Cysteine
pdb|1XPM|A Chain A, Crystal Structure Of Staphylococcus Aureus Hmg-Coa
Synthase With Hmg-Coa And Acetoacetyl-Coa And Acetylated
Cysteine
pdb|1XPM|B Chain B, Crystal Structure Of Staphylococcus Aureus Hmg-Coa
Synthase With Hmg-Coa And Acetoacetyl-Coa And Acetylated
Cysteine
pdb|1XPM|C Chain C, Crystal Structure Of Staphylococcus Aureus Hmg-Coa
Synthase With Hmg-Coa And Acetoacetyl-Coa And Acetylated
Cysteine
pdb|1XPM|D Chain D, Crystal Structure Of Staphylococcus Aureus Hmg-Coa
Synthase With Hmg-Coa And Acetoacetyl-Coa And Acetylated
Cysteine
Length = 390
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 31/77 (40%), Gaps = 19/77 (24%)
Query: 143 QLTKMLGLNPSVKRVMLYFQGCYIGATAIRMAKDFAENNPGQALF--------------- 187
Q+ +LG+ P + + CY AI++AKD+ P + +
Sbjct: 90 QIHNLLGIQPFARCFEMKEAXCYAATPAIQLAKDYLATRPNEKVLVIATDTARYGLNSGG 149
Query: 188 ----GDGAAALIIGANP 200
G GA A++I NP
Sbjct: 150 EPTQGAGAVAMVIAHNP 166
>pdb|1XPK|C Chain C, Crystal Structure Of Staphylococcus Aureus Hmg-Coa
Synthase With Hmg- Coa And With Acetoacetyl-Coa And
Acetylated Cysteine
Length = 388
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 31/77 (40%), Gaps = 20/77 (25%)
Query: 143 QLTKMLGLNPSVKRVMLYFQGCYIGATAIRMAKDFAENNPGQALF--------------- 187
Q+ +LG+ P R + CY AI++AKD+ P + +
Sbjct: 91 QIHNLLGIQP-FARCFEMKEACYAATPAIQLAKDYLATRPNEKVLVIATDTARYGLNSGG 149
Query: 188 ----GDGAAALIIGANP 200
G GA A++I NP
Sbjct: 150 EPTQGAGAVAMVIAHNP 166
>pdb|1ZOW|A Chain A, Crystal Structure Of S. Aureus Fabh, Beta-Ketoacyl Carrier
Protein Synthase Iii
pdb|1ZOW|B Chain B, Crystal Structure Of S. Aureus Fabh, Beta-Ketoacyl Carrier
Protein Synthase Iii
pdb|1ZOW|C Chain C, Crystal Structure Of S. Aureus Fabh, Beta-Ketoacyl Carrier
Protein Synthase Iii
pdb|1ZOW|D Chain D, Crystal Structure Of S. Aureus Fabh, Beta-Ketoacyl Carrier
Protein Synthase Iii
pdb|3IL7|A Chain A, Crystal Structure Of S. Aureus Fabh
pdb|3IL7|B Chain B, Crystal Structure Of S. Aureus Fabh
Length = 313
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 65/275 (23%), Positives = 102/275 (37%), Gaps = 47/275 (17%)
Query: 100 REVPKLGEEAATKAIKEWGQSKSQITHLIFCSLVGVDMP-----------------GADY 142
++ L EA+ KAI + G I +I + G DMP +
Sbjct: 49 QDTSDLAYEASVKAIADAGIQPEDIDMIIVATATG-DMPFPTVANMLQERLGTGKVASMD 107
Query: 143 QLTKMLGLNPSVKRVMLYFQ-GCY-----IGATAIRMAKDFAENNPGQALFGDGAAALII 196
QL G S+ Y Q G Y +GA + D + + LFGDGA A+II
Sbjct: 108 QLAACSGFMYSMITAKQYVQSGDYHNILVVGADKLSKITDLTDRSTA-VLFGDGAGAVII 166
Query: 197 G--ANPDTTLSEKPLFQIVSGAQTILPGSDSDVAGQFREM-GLTVHLSKNVATVVSENIE 253
G + +S + G L + RE+ V + + +T V E
Sbjct: 167 GEVSEGRGIISYEMGSDGTGGKHLYLDKDTGKLKMNGREVFKFAVRIMGDASTRVVEKAN 226
Query: 254 KCLDEAFSPFGIKDWNSLFWIVQPGGPAIVNQIEAKLGLKQQKLSATRHVLSEYGNMGGV 313
D+ LF I I+ +LG+ + K+S + +++YGN
Sbjct: 227 LTSDDI----------DLF-IPHQANIRIMESARERLGISKDKMSVS---VNKYGNTSAA 272
Query: 314 SVFFILD-EIRRKSAEEGK----VTTGEGLEWGVM 343
S+ +D E++ ++ V G GL WG M
Sbjct: 273 SIPLSIDQELKNGKLKDDDTIVLVGFGGGLTWGAM 307
>pdb|4EG1|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Substrate Methionine
pdb|4EG1|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Substrate Methionine
pdb|4EG3|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Product Methionyl-Adenylate
pdb|4EG3|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Product Methionyl-Adenylate
pdb|4EG6|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1325
pdb|4EG6|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1325
pdb|4EG8|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Compound Chem 89
pdb|4EG8|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Compound Chem 89
pdb|3U1E|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1387
pdb|3U1E|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1387
pdb|3U1F|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1392
pdb|3U1F|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1392
pdb|3U1G|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1415
pdb|3U1G|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1415
pdb|3U20|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1444
pdb|3U20|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1444
Length = 542
Score = 31.2 bits (69), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Query: 2 EKVKDGKNQQQGGGLATILAIGTANPPNCIYQADYP-DYYFRVTNSDHMTLLKQKFKRIC 60
+KV + Q+Q A+ C Q DY DY+ R TN H ++K+ + ++
Sbjct: 60 QKVAEAAKQKQVSPYDFTTAVA-GEFKKCFEQMDYSIDYFIRTTNEQHKAVVKELWTKLE 118
Query: 61 EKSNV 65
+K ++
Sbjct: 119 QKGDI 123
>pdb|4EG5|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1312
pdb|4EG5|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1312
Length = 542
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Query: 2 EKVKDGKNQQQGGGLATILAIGTANPPNCIYQADYP-DYYFRVTNSDHMTLLKQKFKRIC 60
+KV + Q+Q A+ C Q DY DY+ R TN H ++K+ + ++
Sbjct: 60 QKVAEAAKQKQVSPYDFTTAVA-GEFKKCFEQMDYSIDYFIRTTNEQHKAVVKELWTKLE 118
Query: 61 EKSNV 65
+K ++
Sbjct: 119 QKGDI 123
>pdb|3QI3|A Chain A, Crystal Structure Of Pde9a(Q453e) In Complex With
Inhibitor Bay73-6691
pdb|3QI3|B Chain B, Crystal Structure Of Pde9a(Q453e) In Complex With
Inhibitor Bay73-6691
pdb|3QI4|A Chain A, Crystal Structure Of Pde9a(Q453e) In Complex With Ibmx
pdb|3QI4|B Chain B, Crystal Structure Of Pde9a(Q453e) In Complex With Ibmx
Length = 533
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 26/59 (44%)
Query: 6 DGKNQQQGGGLATILAIGTANPPNCIYQADYPDYYFRVTNSDHMTLLKQKFKRICEKSN 64
DG Q + G + ILA A + F +N +HMTLLK + C+ SN
Sbjct: 347 DGFKQIRQGMITLILATDMARHAEIMDSFKEKMENFDYSNEEHMTLLKMILIKCCDISN 405
>pdb|2HD1|A Chain A, Crystal Structure Of Pde9 In Complex With Ibmx
pdb|2HD1|B Chain B, Crystal Structure Of Pde9 In Complex With Ibmx
pdb|3K3E|A Chain A, Crystal Structure Of The Pde9a Catalytic Domain In Complex
With (R)-Bay73-6691
pdb|3K3E|B Chain B, Crystal Structure Of The Pde9a Catalytic Domain In Complex
With (R)-Bay73-6691
pdb|3K3H|A Chain A, Crystal Structure Of The Pde9a Catalytic Domain In Complex
With (S)-Bay73-6691
pdb|3K3H|B Chain B, Crystal Structure Of The Pde9a Catalytic Domain In Complex
With (S)-Bay73-6691
pdb|4GH6|A Chain A, Crystal Structure Of The Pde9a Catalytic Domain In Complex
With Inhibitor 28
pdb|4GH6|B Chain B, Crystal Structure Of The Pde9a Catalytic Domain In Complex
With Inhibitor 28
Length = 326
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 12/65 (18%)
Query: 6 DGKNQQQGGGLATILAIGTANPPNCIYQADYPDYY------FRVTNSDHMTLLKQKFKRI 59
DG Q + G + ILA A A+ D + F +N +HMTLLK +
Sbjct: 167 DGFKQIRQGMITLILATDMAR------HAEIMDSFKEKMENFDYSNEEHMTLLKMILIKC 220
Query: 60 CEKSN 64
C+ SN
Sbjct: 221 CDISN 225
>pdb|3N3Z|A Chain A, Crystal Structure Of Pde9a (E406a) Mutant In Complex With
Ibmx
pdb|3N3Z|B Chain B, Crystal Structure Of Pde9a (E406a) Mutant In Complex With
Ibmx
Length = 326
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 12/65 (18%)
Query: 6 DGKNQQQGGGLATILAIGTANPPNCIYQADYPDYY------FRVTNSDHMTLLKQKFKRI 59
DG Q + G + ILA A A+ D + F +N +HMTLLK +
Sbjct: 167 DGFKQIRQGMITLILATDMAR------HAEIMDSFKEKMENFDYSNEEHMTLLKMILIKC 220
Query: 60 CEKSN 64
C+ SN
Sbjct: 221 CDISN 225
>pdb|2YY2|A Chain A, Crystal Structure Of The Human Phosphodiesterase 9a
Catalytic Domain Complexed With Ibmx
pdb|2YY2|B Chain B, Crystal Structure Of The Human Phosphodiesterase 9a
Catalytic Domain Complexed With Ibmx
Length = 333
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 26/59 (44%)
Query: 6 DGKNQQQGGGLATILAIGTANPPNCIYQADYPDYYFRVTNSDHMTLLKQKFKRICEKSN 64
DG Q + G + ILA A + F +N +HMTLLK + C+ SN
Sbjct: 174 DGFKQIRQGMITLILATDMARHAEIMDSFKEKMENFDYSNEEHMTLLKMILIKCCDISN 232
>pdb|3DY8|A Chain A, Human Phosphodiesterase 9 In Complex With Product 5'-gmp
(e+p Complex)
pdb|3DY8|B Chain B, Human Phosphodiesterase 9 In Complex With Product 5'-gmp
(e+p Complex)
pdb|3DYL|A Chain A, Human Phosphdiesterase 9 Substrate Complex (Es Complex)
pdb|3DYL|B Chain B, Human Phosphdiesterase 9 Substrate Complex (Es Complex)
pdb|3DYN|A Chain A, Human Phosphodiestrase 9 In Complex With Cgmp (Zn
Inhibited)
pdb|3DYN|B Chain B, Human Phosphodiestrase 9 In Complex With Cgmp (Zn
Inhibited)
pdb|3DYQ|A Chain A, Human Phosphodiestrase 9 (Inhibited By Omitting Divalent
Cation) In Complex With Cgmp
pdb|3DYQ|B Chain B, Human Phosphodiestrase 9 (Inhibited By Omitting Divalent
Cation) In Complex With Cgmp
pdb|3DYS|A Chain A, Human Phosphodiestrase-5'gmp Complex (Ep), Produced By
Soaking With 20mm Cgmp+20 Mm Mncl2+20 Mm Mgcl2 For 2
Hours, And Flash-Cooled To Liquid Nitrogen Temperature
When Substrate Was Still Abudant.
pdb|3DYS|B Chain B, Human Phosphodiestrase-5'gmp Complex (Ep), Produced By
Soaking With 20mm Cgmp+20 Mm Mncl2+20 Mm Mgcl2 For 2
Hours, And Flash-Cooled To Liquid Nitrogen Temperature
When Substrate Was Still Abudant.
pdb|3JSI|A Chain A, Human Phosphodiesterase 9 In Complex With Inhibitor
pdb|3JSI|B Chain B, Human Phosphodiesterase 9 In Complex With Inhibitor
pdb|3JSW|A Chain A, Human Pde9 In Complex With Selective Inhibitor
pdb|3JSW|B Chain B, Human Pde9 In Complex With Selective Inhibitor
pdb|4E90|A Chain A, Human Phosphodiesterase 9 In Complex With Inhibitors
pdb|4E90|B Chain B, Human Phosphodiesterase 9 In Complex With Inhibitors
Length = 329
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 26/59 (44%)
Query: 6 DGKNQQQGGGLATILAIGTANPPNCIYQADYPDYYFRVTNSDHMTLLKQKFKRICEKSN 64
DG Q + G + ILA A + F +N +HMTLLK + C+ SN
Sbjct: 170 DGFKQIRQGMITLILATDMARHAEIMDSFKEKMENFDYSNEEHMTLLKMILIKCCDISN 228
>pdb|1IN8|A Chain A, Thermotoga Maritima Ruvb T158v
Length = 334
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 77/180 (42%), Gaps = 35/180 (19%)
Query: 141 DYQLTKMLGLNPSVKRVMLYFQG-CYIGATAIRMAKDFAENNPGQALFGDGAAALIIGAN 199
D+Q+ M+G PS K + + Q +GAT + ++P ++ FG +I+ +
Sbjct: 128 DFQIDIMIGKGPSAKSIRIDIQPFTLVGAT----VRSGLLSSPLRSRFG-----IILELD 178
Query: 200 PDTTLSEKPLFQIVSGAQTILPGSDSDVAGQF---REMG---LTVHLSKNVA---TVVSE 250
T K L +I+ A +++ D A + R G + + L+K V TVV
Sbjct: 179 FYTV---KELKEIIKRAASLMDVEIEDAAAEMIAKRSRGTPRIAIRLTKRVRDMLTVVKA 235
Query: 251 ---NIEKCL---------DEAFSPFGIKDWNSLFWIVQPGGPAIVNQIEAKLGLKQQKLS 298
N + L DE F K ++ I + GGP +N + A LG++ LS
Sbjct: 236 DRINTDIVLKTMEVLNIDDEGLDEFDRKILKTIIEIYR-GGPVGLNALAASLGVEADTLS 294
>pdb|1IN6|A Chain A, Thermotoga Maritima Ruvb K64r Mutant
Length = 334
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 77/180 (42%), Gaps = 35/180 (19%)
Query: 141 DYQLTKMLGLNPSVKRVMLYFQG-CYIGATAIRMAKDFAENNPGQALFGDGAAALIIGAN 199
D+Q+ M+G PS K + + Q +GAT + ++P ++ FG +I+ +
Sbjct: 128 DFQIDIMIGKGPSAKSIRIDIQPFTLVGAT----TRSGLLSSPLRSRFG-----IILELD 178
Query: 200 PDTTLSEKPLFQIVSGAQTILPGSDSDVAGQF---REMG---LTVHLSKNVA---TVVSE 250
T K L +I+ A +++ D A + R G + + L+K V TVV
Sbjct: 179 FYTV---KELKEIIKRAASLMDVEIEDAAAEMIAKRSRGTPRIAIRLTKRVRDMLTVVKA 235
Query: 251 ---NIEKCL---------DEAFSPFGIKDWNSLFWIVQPGGPAIVNQIEAKLGLKQQKLS 298
N + L DE F K ++ I + GGP +N + A LG++ LS
Sbjct: 236 DRINTDIVLKTMEVLNIDDEGLDEFDRKILKTIIEIYR-GGPVGLNALAASLGVEADTLS 294
>pdb|1J7K|A Chain A, Thermotoga Maritima Ruvb P216g Mutant
Length = 334
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 77/180 (42%), Gaps = 35/180 (19%)
Query: 141 DYQLTKMLGLNPSVKRVMLYFQG-CYIGATAIRMAKDFAENNPGQALFGDGAAALIIGAN 199
D+Q+ M+G PS K + + Q +GAT + ++P ++ FG +I+ +
Sbjct: 128 DFQIDIMIGKGPSAKSIRIDIQPFTLVGAT----TRSGLLSSPLRSRFG-----IILELD 178
Query: 200 PDTTLSEKPLFQIVSGAQTILPGSDSDVAGQF---REMG---LTVHLSKNVA---TVVSE 250
T K L +I+ A +++ D A + R G + + L+K V TVV
Sbjct: 179 FYTV---KELKEIIKRAASLMDVEIEDAAAEMIAKRSRGTGRIAIRLTKRVRDMLTVVKA 235
Query: 251 ---NIEKCL---------DEAFSPFGIKDWNSLFWIVQPGGPAIVNQIEAKLGLKQQKLS 298
N + L DE F K ++ I + GGP +N + A LG++ LS
Sbjct: 236 DRINTDIVLKTMEVLNIDDEGLDEFDRKILKTIIEIYR-GGPVGLNALAASLGVEADTLS 294
>pdb|1IN7|A Chain A, Thermotoga Maritima Ruvb R170a
Length = 334
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 77/180 (42%), Gaps = 35/180 (19%)
Query: 141 DYQLTKMLGLNPSVKRVMLYFQG-CYIGATAIRMAKDFAENNPGQALFGDGAAALIIGAN 199
D+Q+ M+G PS K + + Q +GAT + ++P ++ FG +I+ +
Sbjct: 128 DFQIDIMIGKGPSAKSIRIDIQPFTLVGAT----TRSGLLSSPLRSAFG-----IILELD 178
Query: 200 PDTTLSEKPLFQIVSGAQTILPGSDSDVAGQF---REMG---LTVHLSKNVA---TVVSE 250
T K L +I+ A +++ D A + R G + + L+K V TVV
Sbjct: 179 FYTV---KELKEIIKRAASLMDVEIEDAAAEMIAKRSRGTPRIAIRLTKRVRDMLTVVKA 235
Query: 251 ---NIEKCL---------DEAFSPFGIKDWNSLFWIVQPGGPAIVNQIEAKLGLKQQKLS 298
N + L DE F K ++ I + GGP +N + A LG++ LS
Sbjct: 236 DRINTDIVLKTMEVLNIDDEGLDEFDRKILKTIIEIYR-GGPVGLNALAASLGVEADTLS 294
>pdb|1IN4|A Chain A, Thermotoga Maritima Ruvb Holliday Junction Branch
Migration Motor
Length = 334
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 77/180 (42%), Gaps = 35/180 (19%)
Query: 141 DYQLTKMLGLNPSVKRVMLYFQG-CYIGATAIRMAKDFAENNPGQALFGDGAAALIIGAN 199
D+Q+ M+G PS K + + Q +GAT + ++P ++ FG +I+ +
Sbjct: 128 DFQIDIMIGKGPSAKSIRIDIQPFTLVGAT----TRSGLLSSPLRSRFG-----IILELD 178
Query: 200 PDTTLSEKPLFQIVSGAQTILPGSDSDVAGQF---REMG---LTVHLSKNVA---TVVSE 250
T K L +I+ A +++ D A + R G + + L+K V TVV
Sbjct: 179 FYTV---KELKEIIKRAASLMDVEIEDAAAEMIAKRSRGTPRIAIRLTKRVRDMLTVVKA 235
Query: 251 ---NIEKCL---------DEAFSPFGIKDWNSLFWIVQPGGPAIVNQIEAKLGLKQQKLS 298
N + L DE F K ++ I + GGP +N + A LG++ LS
Sbjct: 236 DRINTDIVLKTMEVLNIDDEGLDEFDRKILKTIIEIYR-GGPVGLNALAASLGVEADTLS 294
>pdb|3V7I|A Chain A, Germicidin Synthase (Gcs) From Streptomyces Coelicolor, A
Type Iii Polyketide Synthase
Length = 413
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 56/281 (19%), Positives = 98/281 (34%), Gaps = 44/281 (15%)
Query: 102 VPKLGEEAATKAIKEWGQSKSQITHLIFCSLVGVDMPGADYQLTKMLGLNPSVKRVMLYF 161
V GE AA A++ G + + LI + +PG D L L L +
Sbjct: 137 VQAYGERAARGALQIAGLDVADVDCLITSNSTTPALPGLDVALANRLPLRGDTMLLPATQ 196
Query: 162 QGCYIG---------------------------ATAIRMAKDFAENNPGQALFGDGAAAL 194
C G +T + A D E+ + LF D A A
Sbjct: 197 WACVAGTRSLALAADLVAADPDRVVLVVISEALSTTYQPADDTLESLIVRLLFADTAVAA 256
Query: 195 IIGANPDTTLSEKPLFQIVSGAQTILPGSDSDVAGQFREMGLTVHLSKNVATVVSENIEK 254
++ P + + ++ + LPG+ + R G + + V E +
Sbjct: 257 VVTGRP----RPESVLRLDAAWHHTLPGTRDLHRLETRADGTHFVMDRRGPRAVQETVTA 312
Query: 255 CLDEAFSPF--GIKDWNSLFWIVQPGGPAIVNQIEAKLGLKQQK--LSATRHVLSEYGNM 310
+ + W+ + PGG ++ +E + + LS +R + GN
Sbjct: 313 MWEWLRVRYEDDPSSWHPDVLLAHPGGTRVLEYMEQTMPDEWPSGLLSYSRDSYTS-GNR 371
Query: 311 GGVSVFFILDEIRRKSAEEGKVTTGEGLEWGVMFGIGAGVT 351
GG +VF IL R++ + G+ T V++ G+T
Sbjct: 372 GGAAVFDIL----RRAHDAGQKTGSR----AVLYAAAPGLT 404
>pdb|3TUN|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1356
pdb|3TUN|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1356
pdb|4EG4|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1289
pdb|4EG4|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1289
pdb|4EG7|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1331
pdb|4EG7|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1331
pdb|4EGA|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1320
pdb|4EGA|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1320
pdb|3U1Z|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1433
pdb|3U1Z|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1433
Length = 542
Score = 28.1 bits (61), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 33 QADYP-DYYFRVTNSDHMTLLKQKFKRICEKSNV 65
Q DY DY+ R TN H ++K+ + ++ +K ++
Sbjct: 90 QMDYSIDYFIRTTNEQHKAVVKELWTKLEQKGDI 123
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,408,593
Number of Sequences: 62578
Number of extensions: 470150
Number of successful extensions: 1334
Number of sequences better than 100.0: 65
Number of HSP's better than 100.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 1210
Number of HSP's gapped (non-prelim): 79
length of query: 367
length of database: 14,973,337
effective HSP length: 100
effective length of query: 267
effective length of database: 8,715,537
effective search space: 2327048379
effective search space used: 2327048379
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)