BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017694
(367 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2LDU|A Chain A, Solution Nmr Structure Of Heat Shock Factor Protein 1 Dna
Binding Domain From Homo Sapiens, Northeast Structural
Genomics Consortium Target Hr3023c
Length = 125
Score = 98.2 bits (243), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 48/103 (46%), Positives = 67/103 (65%), Gaps = 11/103 (10%)
Query: 46 PPFLTKTYEMVDDPNTNEVVSWSRGGVSFVVWDPHAFSTSLLPRHFKHSNFSSFVRQLNT 105
P FLTK + +V DP+T+ ++ WS G SF V+D F+ +LP++FKH+N +SFVRQLN
Sbjct: 18 PAFLTKLWTLVSDPDTDALICWSPSGNSFHVFDQGQFAKEVLPKYFKHNNMASFVRQLNM 77
Query: 106 YGFRKI-----------DPDRWEFSNEGFLRGERHLLKNIKRR 137
YGFRK+ + D EF + FLRG+ LL+NIKR+
Sbjct: 78 YGFRKVVHIEQGGLVKPERDDTEFQHPCFLRGQEQLLENIKRK 120
>pdb|1HKS|A Chain A, Solution Structure Of The Dna-Binding Domain Of Drosophila
Heat Shock Transcription Factor
pdb|1HKT|A Chain A, Solution Structure Of The Dna-Binding Domain Of Drosophila
Heat Shock Transcription Factor
Length = 106
Score = 90.5 bits (223), Expect = 1e-18, Method: Composition-based stats.
Identities = 45/105 (42%), Positives = 63/105 (60%), Gaps = 10/105 (9%)
Query: 43 TGPPPFLTKTYEMVDDPNTNEVVSWSRGGVSFVVWDPHAFSTSLLPRHFKHSNFSSFVRQ 102
+G P FL K + +VDD +TN ++ W++ G SFV+ + F+ LLP ++KH+N +SF+RQ
Sbjct: 2 SGVPAFLAKLWRLVDDADTNRLICWTKDGQSFVIQNQAQFAKELLPLNYKHNNMASFIRQ 61
Query: 103 LNTYGFRKI----------DPDRWEFSNEGFLRGERHLLKNIKRR 137
LN YGF KI D D EFS+ F R LL IKR+
Sbjct: 62 LNMYGFHKITSIDNGGLRFDRDEIEFSHPFFKRNSPFLLDQIKRK 106
>pdb|3HTS|B Chain B, Heat Shock Transcription FactorDNA COMPLEX
Length = 102
Score = 75.5 bits (184), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 37/87 (42%), Positives = 51/87 (58%), Gaps = 11/87 (12%)
Query: 46 PPFLTKTYEMVDDPNTNEVVSWSRGGVSFVVWDPHAFSTSLLPRHFKHSNFSSFVRQLNT 105
P F+ K + MV+D + + + WS G S VV + F +LP++FKHSNF+SFVRQLN
Sbjct: 13 PAFVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLPKYFKHSNFASFVRQLNM 72
Query: 106 YGFRKI-----------DPDRWEFSNE 121
YG+ K+ + RWEF NE
Sbjct: 73 YGWHKVQDVKSGSMLSNNDSRWEFENE 99
>pdb|1FYM|A Chain A, Serendipitous Crystal Structure Containing The Heat Shock
Transcription Factor's Dna Binding Domain And Cognate
Dna In A Tail-To-Tail Orientation
pdb|1FYM|B Chain B, Serendipitous Crystal Structure Containing The Heat Shock
Transcription Factor's Dna Binding Domain And Cognate
Dna In A Tail-To-Tail Orientation
pdb|2HTS|A Chain A, Crystal Structure Of The Dna Binding Domain Of The Heat
Shock Transcription Factor
pdb|3HSF|A Chain A, Heat Shock Transcription Factor (Hsf)
Length = 92
Score = 74.7 bits (182), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 37/87 (42%), Positives = 51/87 (58%), Gaps = 11/87 (12%)
Query: 46 PPFLTKTYEMVDDPNTNEVVSWSRGGVSFVVWDPHAFSTSLLPRHFKHSNFSSFVRQLNT 105
P F+ K + MV+D + + + WS G S VV + F +LP++FKHSNF+SFVRQLN
Sbjct: 3 PAFVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLPKYFKHSNFASFVRQLNM 62
Query: 106 YGFRKI-----------DPDRWEFSNE 121
YG+ K+ + RWEF NE
Sbjct: 63 YGWHKVQDVKSGSMLSNNDSRWEFENE 89
>pdb|1FBU|A Chain A, Heat Shock Transcription Factor Dna Binding Domain
pdb|1FBU|B Chain B, Heat Shock Transcription Factor Dna Binding Domain
Length = 90
Score = 74.3 bits (181), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 37/87 (42%), Positives = 51/87 (58%), Gaps = 11/87 (12%)
Query: 46 PPFLTKTYEMVDDPNTNEVVSWSRGGVSFVVWDPHAFSTSLLPRHFKHSNFSSFVRQLNT 105
P F+ K + MV+D + + + WS G S VV + F +LP++FKHSNF+SFVRQLN
Sbjct: 1 PAFVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLPKYFKHSNFASFVRQLNM 60
Query: 106 YGFRKI-----------DPDRWEFSNE 121
YG+ K+ + RWEF NE
Sbjct: 61 YGWHKVQDVKSGSMLSNNDSRWEFENE 87
>pdb|1FYK|A Chain A, Serendipitous Crystal Structure Containing The Heat Shock
Transcription Factor's Dna Binding Domain And Cognate
Dna That Is Translationally Disordered
pdb|1FYL|A Chain A, Serendipitous Crystal Structure Containing The Heat Shock
Transcription Factor's Dna Binding Domain And Cognate
Dna In A Head-To-Head Orientation
pdb|1FYL|B Chain B, Serendipitous Crystal Structure Containing The Heat Shock
Transcription Factor's Dna Binding Domain And Cognate
Dna In A Head-To-Head Orientation
Length = 92
Score = 73.9 bits (180), Expect = 1e-13, Method: Composition-based stats.
Identities = 36/87 (41%), Positives = 50/87 (57%), Gaps = 11/87 (12%)
Query: 46 PPFLTKTYEMVDDPNTNEVVSWSRGGVSFVVWDPHAFSTSLLPRHFKHSNFSSFVRQLNT 105
P F+ K + V+D + + + WS G S VV + F +LP++FKHSNF+SFVRQLN
Sbjct: 3 PAFVNKLWSXVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLPKYFKHSNFASFVRQLNX 62
Query: 106 YGFRKI-----------DPDRWEFSNE 121
YG+ K+ + RWEF NE
Sbjct: 63 YGWHKVQDVKSGSXLSNNDSRWEFENE 89
>pdb|1FBS|A Chain A, Heat Shock Transcription Factor Dna Binding Domain
Containing The P237a Mutation
pdb|1FBS|B Chain B, Heat Shock Transcription Factor Dna Binding Domain
Containing The P237a Mutation
Length = 90
Score = 72.4 bits (176), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 36/87 (41%), Positives = 50/87 (57%), Gaps = 11/87 (12%)
Query: 46 PPFLTKTYEMVDDPNTNEVVSWSRGGVSFVVWDPHAFSTSLLPRHFKHSNFSSFVRQLNT 105
P F+ K + MV+D + + + WS G S VV + F +L ++FKHSNF+SFVRQLN
Sbjct: 1 PAFVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLAKYFKHSNFASFVRQLNM 60
Query: 106 YGFRKI-----------DPDRWEFSNE 121
YG+ K+ + RWEF NE
Sbjct: 61 YGWHKVQDVKSGSMLSNNDSRWEFENE 87
>pdb|1FBQ|A Chain A, Heat Shock Transcription Factor Dna Binding Domain
Containing The P237k Mutation
pdb|1FBQ|B Chain B, Heat Shock Transcription Factor Dna Binding Domain
Containing The P237k Mutation
Length = 90
Score = 72.0 bits (175), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 36/87 (41%), Positives = 50/87 (57%), Gaps = 11/87 (12%)
Query: 46 PPFLTKTYEMVDDPNTNEVVSWSRGGVSFVVWDPHAFSTSLLPRHFKHSNFSSFVRQLNT 105
P F+ K + MV+D + + + WS G S VV + F +L ++FKHSNF+SFVRQLN
Sbjct: 1 PAFVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLKKYFKHSNFASFVRQLNM 60
Query: 106 YGFRKI-----------DPDRWEFSNE 121
YG+ K+ + RWEF NE
Sbjct: 61 YGWHKVQDVKSGSMLSNNDSRWEFENE 87
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,433,155
Number of Sequences: 62578
Number of extensions: 396925
Number of successful extensions: 940
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 927
Number of HSP's gapped (non-prelim): 12
length of query: 367
length of database: 14,973,337
effective HSP length: 100
effective length of query: 267
effective length of database: 8,715,537
effective search space: 2327048379
effective search space used: 2327048379
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)