Query 017694
Match_columns 367
No_of_seqs 288 out of 1045
Neff 5.0
Searched_HMMs 46136
Date Fri Mar 29 02:37:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017694.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017694hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0627 Heat shock transcripti 100.0 6.7E-47 1.5E-51 366.7 8.7 188 44-231 11-209 (304)
2 smart00415 HSF heat shock fact 100.0 6E-35 1.3E-39 244.4 4.9 94 44-137 1-105 (105)
3 PF00447 HSF_DNA-bind: HSF-typ 100.0 3.7E-35 8.1E-40 243.9 3.1 93 47-139 1-102 (103)
4 COG5169 HSF1 Heat shock transc 100.0 2.5E-33 5.4E-38 270.6 7.1 143 44-186 9-169 (282)
5 PF03310 Cauli_DNA-bind: Cauli 97.3 0.00093 2E-08 58.1 7.5 79 173-254 2-80 (121)
6 PF00178 Ets: Ets-domain; Int 94.8 0.0086 1.9E-07 49.1 0.3 59 49-107 5-65 (85)
7 smart00413 ETS erythroblast tr 92.3 0.1 2.2E-06 43.2 2.3 57 51-107 7-65 (87)
8 PF06005 DUF904: Protein of un 86.9 4.5 9.8E-05 32.3 7.8 43 161-203 23-65 (72)
9 PF10168 Nup88: Nuclear pore c 84.6 4.1 8.9E-05 45.2 8.8 79 161-239 563-643 (717)
10 TIGR02449 conserved hypothetic 84.6 3.7 7.9E-05 32.3 6.1 20 185-204 43-62 (65)
11 KOG3806 Predicted transcriptio 84.1 1.2 2.6E-05 41.4 3.7 63 44-106 67-131 (177)
12 PRK15422 septal ring assembly 82.2 6 0.00013 32.3 6.6 42 161-202 23-71 (79)
13 PF11932 DUF3450: Protein of u 81.0 11 0.00024 36.1 9.2 59 161-219 54-112 (251)
14 PF02183 HALZ: Homeobox associ 80.9 6.9 0.00015 28.5 6.0 40 161-200 3-42 (45)
15 PF10473 CENP-F_leu_zip: Leuci 77.3 19 0.0004 32.3 8.8 57 160-216 56-112 (140)
16 TIGR02894 DNA_bind_RsfA transc 77.1 17 0.00037 33.4 8.6 53 165-217 99-151 (161)
17 PF04340 DUF484: Protein of un 76.7 10 0.00022 35.7 7.4 77 119-223 17-93 (225)
18 TIGR03752 conj_TIGR03752 integ 75.5 20 0.00044 38.1 9.8 54 161-214 71-125 (472)
19 TIGR02449 conserved hypothetic 75.4 36 0.00077 26.8 8.8 56 161-216 5-60 (65)
20 COG3074 Uncharacterized protei 74.4 23 0.00049 28.6 7.5 29 161-189 23-51 (79)
21 PF12325 TMF_TATA_bd: TATA ele 74.4 23 0.0005 30.9 8.4 55 160-214 34-91 (120)
22 PF04111 APG6: Autophagy prote 74.1 54 0.0012 32.8 12.2 51 160-210 47-97 (314)
23 PF09726 Macoilin: Transmembra 70.5 34 0.00073 38.1 10.6 26 160-185 422-447 (697)
24 PF07106 TBPIP: Tat binding pr 70.1 38 0.00083 30.4 9.2 57 160-216 76-134 (169)
25 PF08826 DMPK_coil: DMPK coile 66.5 43 0.00092 26.0 7.4 45 161-209 6-50 (61)
26 PRK06800 fliH flagellar assemb 65.0 1.1E+02 0.0024 29.1 11.2 71 161-231 36-126 (228)
27 PF02183 HALZ: Homeobox associ 63.8 18 0.00038 26.4 4.6 33 161-193 10-42 (45)
28 KOG4005 Transcription factor X 59.9 43 0.00094 32.9 7.8 54 160-213 94-152 (292)
29 PF12329 TMF_DNA_bd: TATA elem 58.4 76 0.0017 25.2 7.8 50 164-213 20-69 (74)
30 PF06005 DUF904: Protein of un 57.1 98 0.0021 24.7 9.5 42 161-202 9-50 (72)
31 KOG4460 Nuclear pore complex, 55.7 47 0.001 36.2 7.9 59 163-221 588-646 (741)
32 PF11932 DUF3450: Protein of u 53.4 1.5E+02 0.0033 28.3 10.5 46 166-211 52-97 (251)
33 COG3074 Uncharacterized protei 53.2 95 0.0021 25.1 7.4 50 161-210 9-58 (79)
34 KOG4196 bZIP transcription fac 52.5 50 0.0011 29.5 6.3 41 166-213 77-117 (135)
35 TIGR02132 phaR_Bmeg polyhydrox 51.4 84 0.0018 29.6 7.9 53 160-216 83-139 (189)
36 smart00338 BRLZ basic region l 51.4 39 0.00084 25.6 5.0 30 161-190 31-60 (65)
37 PF07200 Mod_r: Modifier of ru 51.3 1.2E+02 0.0026 26.4 8.8 62 164-230 42-103 (150)
38 COG5481 Uncharacterized conser 51.2 1E+02 0.0022 24.2 7.1 28 171-198 5-32 (67)
39 PF11559 ADIP: Afadin- and alp 51.2 1.7E+02 0.0037 25.6 10.1 10 102-111 10-19 (151)
40 PF10779 XhlA: Haemolysin XhlA 50.6 1.2E+02 0.0026 23.6 9.0 56 161-216 4-59 (71)
41 PF14817 HAUS5: HAUS augmin-li 50.2 1.5E+02 0.0033 32.7 11.0 43 172-214 81-123 (632)
42 PF05377 FlaC_arch: Flagella a 50.0 80 0.0017 24.2 6.3 33 168-200 5-37 (55)
43 PRK00888 ftsB cell division pr 49.7 58 0.0013 27.5 6.2 33 164-196 28-60 (105)
44 PF09726 Macoilin: Transmembra 49.6 2E+02 0.0043 32.3 11.9 59 161-219 416-481 (697)
45 PF14282 FlxA: FlxA-like prote 49.4 1.1E+02 0.0025 25.7 7.9 25 160-184 16-40 (106)
46 PF02403 Seryl_tRNA_N: Seryl-t 48.7 1E+02 0.0022 25.4 7.5 25 160-184 40-64 (108)
47 PRK09039 hypothetical protein; 48.3 1E+02 0.0022 31.2 8.8 44 161-204 121-164 (343)
48 PF07676 PD40: WD40-like Beta 48.3 11 0.00024 25.2 1.4 23 55-77 4-26 (39)
49 COG1579 Zn-ribbon protein, pos 48.0 70 0.0015 31.2 7.2 47 161-207 36-82 (239)
50 PF10224 DUF2205: Predicted co 47.5 1.6E+02 0.0034 24.1 9.3 45 164-208 9-54 (80)
51 PF00170 bZIP_1: bZIP transcri 47.4 54 0.0012 24.8 5.2 27 161-187 31-57 (64)
52 PF08614 ATG16: Autophagy prot 46.7 1.7E+02 0.0038 26.8 9.5 26 185-210 152-177 (194)
53 PRK10963 hypothetical protein; 46.7 90 0.002 29.5 7.7 77 119-223 14-90 (223)
54 PRK11637 AmiB activator; Provi 46.3 1.2E+02 0.0027 31.2 9.2 22 183-204 95-116 (428)
55 PF10226 DUF2216: Uncharacteri 46.2 1.2E+02 0.0027 28.7 8.2 24 161-184 53-76 (195)
56 TIGR00219 mreC rod shape-deter 45.2 67 0.0015 31.6 6.8 24 164-187 67-90 (283)
57 PF08317 Spc7: Spc7 kinetochor 44.9 1.4E+02 0.0031 29.7 9.2 19 166-184 180-198 (325)
58 PF10473 CENP-F_leu_zip: Leuci 44.8 1.9E+02 0.0041 26.0 9.0 37 164-200 53-89 (140)
59 KOG0977 Nuclear envelope prote 44.7 2.1E+02 0.0045 31.3 10.7 67 160-226 166-245 (546)
60 PRK10884 SH3 domain-containing 44.4 71 0.0015 30.3 6.6 25 106-130 65-91 (206)
61 PRK09039 hypothetical protein; 44.2 1.2E+02 0.0027 30.6 8.7 58 161-218 128-185 (343)
62 PF11559 ADIP: Afadin- and alp 44.1 2.2E+02 0.0048 24.9 11.3 31 164-194 60-90 (151)
63 PRK14127 cell division protein 43.7 71 0.0015 27.5 5.9 39 165-203 32-70 (109)
64 smart00787 Spc7 Spc7 kinetocho 43.5 1.6E+02 0.0035 29.6 9.3 40 165-204 206-245 (312)
65 PF12329 TMF_DNA_bd: TATA elem 43.4 72 0.0016 25.3 5.5 37 173-209 15-51 (74)
66 PRK11637 AmiB activator; Provi 43.1 1.5E+02 0.0032 30.6 9.2 56 161-216 80-135 (428)
67 PF00038 Filament: Intermediat 42.9 3.2E+02 0.007 26.4 12.1 46 161-206 214-259 (312)
68 PF04728 LPP: Lipoprotein leuc 42.5 1.6E+02 0.0034 22.7 6.9 32 164-195 4-35 (56)
69 COG2433 Uncharacterized conser 41.8 2.8E+02 0.0061 30.8 11.2 43 160-202 426-468 (652)
70 PF06156 DUF972: Protein of un 40.9 72 0.0016 27.3 5.5 30 162-191 21-50 (107)
71 PF14817 HAUS5: HAUS augmin-li 40.7 2.2E+02 0.0047 31.6 10.4 116 160-281 83-199 (632)
72 PRK00888 ftsB cell division pr 40.0 81 0.0017 26.7 5.6 16 181-196 31-46 (105)
73 PF04880 NUDE_C: NUDE protein, 39.9 15 0.00033 33.8 1.3 37 161-202 19-55 (166)
74 PF11414 Suppressor_APC: Adeno 39.7 1.1E+02 0.0024 25.2 6.2 43 160-202 4-46 (84)
75 PRK10803 tol-pal system protei 39.2 2.3E+02 0.0051 27.5 9.5 50 160-209 37-93 (263)
76 PF07407 Seadorna_VP6: Seadorn 39.0 1E+02 0.0022 31.8 6.9 28 158-185 34-61 (420)
77 PF08227 DASH_Hsk3: DASH compl 39.0 1.5E+02 0.0033 21.7 6.1 39 171-217 3-41 (45)
78 PF13094 CENP-Q: CENP-Q, a CEN 38.3 1.8E+02 0.0039 25.8 7.9 13 168-180 25-37 (160)
79 PF08581 Tup_N: Tup N-terminal 38.3 2.2E+02 0.0047 23.1 8.1 48 163-210 4-58 (79)
80 PRK13182 racA polar chromosome 38.2 1E+02 0.0023 28.4 6.5 18 123-140 38-55 (175)
81 TIGR03752 conj_TIGR03752 integ 38.0 2.5E+02 0.0053 30.2 9.9 42 161-202 64-105 (472)
82 PF07407 Seadorna_VP6: Seadorn 37.7 1.6E+02 0.0035 30.4 8.1 51 163-213 32-84 (420)
83 PF07888 CALCOCO1: Calcium bin 37.6 1.3E+02 0.0028 32.8 7.9 47 161-207 141-187 (546)
84 PF10805 DUF2730: Protein of u 37.3 2E+02 0.0044 24.2 7.6 46 165-210 44-91 (106)
85 PF10211 Ax_dynein_light: Axon 36.7 1.8E+02 0.004 26.9 8.0 11 66-76 13-23 (189)
86 PF04977 DivIC: Septum formati 36.1 1.1E+02 0.0025 23.2 5.6 10 219-228 52-61 (80)
87 PRK05431 seryl-tRNA synthetase 36.0 1.4E+02 0.0031 31.0 7.9 49 161-209 40-91 (425)
88 PF07106 TBPIP: Tat binding pr 35.8 1.2E+02 0.0025 27.2 6.4 69 160-230 83-153 (169)
89 COG3159 Uncharacterized protei 35.6 1.3E+02 0.0027 29.1 6.7 78 116-221 12-89 (218)
90 PF05524 PEP-utilisers_N: PEP- 35.5 1.3E+02 0.0027 25.3 6.2 55 178-232 36-91 (123)
91 PF07888 CALCOCO1: Calcium bin 35.0 4.8E+02 0.01 28.6 11.6 32 163-194 150-181 (546)
92 PRK13169 DNA replication intia 34.3 1E+02 0.0022 26.6 5.4 33 161-193 20-52 (110)
93 PF04156 IncA: IncA protein; 33.9 3.5E+02 0.0076 24.3 11.4 59 160-218 92-150 (191)
94 COG1382 GimC Prefoldin, chaper 33.9 1.5E+02 0.0033 26.0 6.4 41 161-201 68-108 (119)
95 PF04102 SlyX: SlyX; InterPro 33.6 1.4E+02 0.0031 23.2 5.7 27 175-201 23-49 (69)
96 PF11853 DUF3373: Protein of u 33.5 40 0.00086 36.1 3.3 38 160-205 22-59 (489)
97 PRK00846 hypothetical protein; 33.3 1.9E+02 0.0042 23.5 6.5 9 207-215 39-47 (77)
98 PRK13729 conjugal transfer pil 33.2 2.3E+02 0.0049 30.4 8.8 39 172-210 78-116 (475)
99 TIGR00414 serS seryl-tRNA synt 33.1 2.1E+02 0.0045 29.8 8.4 21 161-181 42-62 (418)
100 COG4942 Membrane-bound metallo 33.0 2.5E+02 0.0053 29.7 8.9 11 192-202 95-105 (420)
101 KOG3863 bZIP transcription fac 31.9 59 0.0013 35.7 4.3 61 120-186 478-541 (604)
102 PRK10803 tol-pal system protei 31.7 1.8E+02 0.0039 28.3 7.3 39 167-205 58-96 (263)
103 KOG0804 Cytoplasmic Zn-finger 31.4 2E+02 0.0044 30.7 7.9 47 164-210 348-394 (493)
104 PLN02320 seryl-tRNA synthetase 31.3 1.9E+02 0.0041 31.2 7.9 18 121-138 69-87 (502)
105 PRK04406 hypothetical protein; 31.0 2.1E+02 0.0045 22.9 6.3 12 205-216 35-46 (75)
106 PRK04325 hypothetical protein; 30.4 2.2E+02 0.0048 22.6 6.4 11 205-215 33-43 (74)
107 PF04201 TPD52: Tumour protein 30.3 1.6E+02 0.0035 27.2 6.3 39 162-200 28-66 (162)
108 PLN02678 seryl-tRNA synthetase 30.1 2.1E+02 0.0045 30.4 7.9 21 161-181 45-65 (448)
109 PHA01750 hypothetical protein 30.0 1.8E+02 0.0039 23.3 5.6 31 173-203 38-68 (75)
110 PF12718 Tropomyosin_1: Tropom 29.7 2.6E+02 0.0057 24.8 7.5 22 163-184 35-56 (143)
111 PF07798 DUF1640: Protein of u 29.6 2.8E+02 0.0062 25.1 7.9 14 98-111 6-19 (177)
112 PF15070 GOLGA2L5: Putative go 29.1 5.2E+02 0.011 28.6 11.0 72 161-232 85-163 (617)
113 PRK02119 hypothetical protein; 29.1 2.4E+02 0.0052 22.4 6.4 12 205-216 33-44 (73)
114 TIGR02894 DNA_bind_RsfA transc 28.7 2.1E+02 0.0046 26.4 6.7 34 174-207 101-134 (161)
115 COG1579 Zn-ribbon protein, pos 28.7 5.6E+02 0.012 25.0 11.7 51 160-210 93-143 (239)
116 PF10146 zf-C4H2: Zinc finger- 28.6 5.4E+02 0.012 24.8 11.0 54 165-218 34-87 (230)
117 KOG4552 Vitamin-D-receptor int 28.5 5.6E+02 0.012 25.0 10.1 40 175-214 58-97 (272)
118 PF12718 Tropomyosin_1: Tropom 28.5 2.9E+02 0.0063 24.6 7.5 47 161-207 19-65 (143)
119 PRK02793 phi X174 lysis protei 28.5 2.5E+02 0.0055 22.2 6.4 10 206-215 33-42 (72)
120 PF10018 Med4: Vitamin-D-recep 28.4 4E+02 0.0086 24.5 8.7 52 173-228 12-63 (188)
121 PF04977 DivIC: Septum formati 28.4 2.6E+02 0.0057 21.1 6.9 32 165-196 19-50 (80)
122 PF03904 DUF334: Domain of unk 28.3 3.9E+02 0.0084 26.1 8.7 40 163-202 43-82 (230)
123 PF11471 Sugarporin_N: Maltopo 27.9 79 0.0017 24.4 3.3 18 189-206 30-47 (60)
124 KOG3915 Transcription regulato 27.8 3E+02 0.0065 29.8 8.4 13 165-177 501-513 (641)
125 KOG4010 Coiled-coil protein TP 27.6 1.9E+02 0.0041 27.6 6.3 38 163-200 44-81 (208)
126 PF03127 GAT: GAT domain; Int 27.4 1.8E+02 0.0039 23.8 5.7 81 162-247 10-90 (100)
127 PF12269 zf-CpG_bind_C: CpG bi 27.4 1.5E+02 0.0031 29.0 5.8 25 194-218 39-63 (236)
128 PF08826 DMPK_coil: DMPK coile 27.4 3E+02 0.0064 21.4 7.1 25 187-211 21-45 (61)
129 PF04156 IncA: IncA protein; 27.0 4.6E+02 0.01 23.5 9.1 44 161-204 107-150 (191)
130 PF02994 Transposase_22: L1 tr 26.9 2.5E+02 0.0055 28.7 7.7 53 161-213 110-166 (370)
131 PHA02562 46 endonuclease subun 26.9 4E+02 0.0088 27.9 9.5 18 211-228 405-422 (562)
132 PF07889 DUF1664: Protein of u 26.8 3.1E+02 0.0067 24.2 7.3 55 160-217 40-94 (126)
133 PRK13922 rod shape-determining 26.7 2E+02 0.0043 27.7 6.6 24 164-187 70-93 (276)
134 PF11853 DUF3373: Protein of u 26.3 61 0.0013 34.7 3.3 15 164-178 32-46 (489)
135 cd00632 Prefoldin_beta Prefold 26.3 2.6E+02 0.0056 23.1 6.4 44 160-203 60-103 (105)
136 PF12709 Kinetocho_Slk19: Cent 26.2 2.1E+02 0.0046 23.9 5.7 25 162-186 48-72 (87)
137 PF07763 FEZ: FEZ-like protein 26.2 4.1E+02 0.0089 26.1 8.6 29 217-246 209-237 (244)
138 PF04420 CHD5: CHD5-like prote 26.1 3.4E+02 0.0073 24.5 7.6 32 182-213 71-102 (161)
139 KOG0977 Nuclear envelope prote 26.1 4.5E+02 0.0098 28.8 9.7 43 160-202 152-194 (546)
140 PF09304 Cortex-I_coil: Cortex 26.1 4.3E+02 0.0094 22.9 8.3 54 160-213 20-73 (107)
141 PF10883 DUF2681: Protein of u 26.1 3.1E+02 0.0068 22.8 6.7 33 163-195 23-55 (87)
142 PF13874 Nup54: Nucleoporin co 25.8 4.5E+02 0.0099 23.0 8.5 48 163-217 44-91 (141)
143 PRK13729 conjugal transfer pil 25.4 2.2E+02 0.0048 30.5 7.1 36 168-203 81-116 (475)
144 KOG3433 Protein involved in me 25.2 6E+02 0.013 24.2 10.4 55 165-219 76-130 (203)
145 PF10482 CtIP_N: Tumour-suppre 25.1 3.4E+02 0.0075 23.9 7.0 43 160-202 18-67 (120)
146 PF06785 UPF0242: Uncharacteri 25.0 3.4E+02 0.0075 28.1 8.0 22 163-184 99-120 (401)
147 PF08317 Spc7: Spc7 kinetochor 24.8 4.5E+02 0.0097 26.2 8.9 49 163-211 209-257 (325)
148 PF00170 bZIP_1: bZIP transcri 24.6 3.1E+02 0.0066 20.6 6.7 17 193-209 28-44 (64)
149 PRK10548 flagellar biosynthesi 23.9 1.4E+02 0.0031 26.0 4.6 59 173-231 27-85 (121)
150 PF04012 PspA_IM30: PspA/IM30 23.8 5.8E+02 0.013 23.5 9.1 18 190-207 118-135 (221)
151 KOG1853 LIS1-interacting prote 23.8 7E+02 0.015 25.0 9.7 10 161-170 50-59 (333)
152 PF04325 DUF465: Protein of un 23.6 1.3E+02 0.0029 21.7 3.7 24 161-184 25-48 (49)
153 PRK15396 murein lipoprotein; P 23.6 4E+02 0.0088 21.6 8.0 36 163-198 25-60 (78)
154 PF10805 DUF2730: Protein of u 23.6 3.8E+02 0.0082 22.5 7.0 17 188-204 76-92 (106)
155 PF09787 Golgin_A5: Golgin sub 23.4 3.3E+02 0.0071 29.0 8.1 40 163-202 274-313 (511)
156 PF06102 DUF947: Domain of unk 23.4 4.7E+02 0.01 23.9 8.0 36 171-206 64-101 (168)
157 KOG1760 Molecular chaperone Pr 23.3 3E+02 0.0064 24.6 6.4 39 160-198 78-116 (131)
158 PRK15396 murein lipoprotein; P 23.2 3.9E+02 0.0085 21.7 6.7 44 160-203 29-72 (78)
159 PRK15422 septal ring assembly 23.1 4.3E+02 0.0093 21.7 9.0 35 161-195 9-43 (79)
160 PF10779 XhlA: Haemolysin XhlA 22.9 3.7E+02 0.0079 20.9 8.2 51 175-225 4-54 (71)
161 PRK14143 heat shock protein Gr 22.8 7.1E+02 0.015 24.2 9.8 41 161-201 65-105 (238)
162 COG1730 GIM5 Predicted prefold 22.7 4.7E+02 0.01 23.6 7.7 46 160-205 91-136 (145)
163 PF04849 HAP1_N: HAP1 N-termin 22.4 8.3E+02 0.018 24.8 10.6 50 169-218 233-282 (306)
164 KOG4360 Uncharacterized coiled 22.3 3.1E+02 0.0068 29.9 7.5 49 163-211 226-274 (596)
165 PHA01819 hypothetical protein 22.3 1.2E+02 0.0026 26.0 3.7 27 195-224 74-100 (129)
166 PF00038 Filament: Intermediat 22.2 7.2E+02 0.016 24.0 9.7 32 178-209 224-255 (312)
167 PRK03947 prefoldin subunit alp 22.1 4.1E+02 0.0089 22.9 7.2 46 160-205 91-136 (140)
168 PF01920 Prefoldin_2: Prefoldi 22.0 3.5E+02 0.0076 21.6 6.4 42 160-201 59-100 (106)
169 PF08946 Osmo_CC: Osmosensory 21.3 1.9E+02 0.004 21.5 4.0 28 183-210 11-38 (46)
170 PF08781 DP: Transcription fac 21.3 4.6E+02 0.01 23.7 7.4 10 224-233 34-43 (142)
171 TIGR02338 gimC_beta prefoldin, 21.3 4E+02 0.0087 22.2 6.7 42 161-202 65-106 (110)
172 PF05701 WEMBL: Weak chloropla 21.2 5.3E+02 0.012 27.6 9.2 50 161-210 377-426 (522)
173 PRK13169 DNA replication intia 21.2 3.9E+02 0.0084 23.1 6.6 17 167-183 12-28 (110)
174 PF04051 TRAPP: Transport prot 21.1 1.3E+02 0.0029 26.5 4.0 65 45-110 57-129 (152)
175 KOG4196 bZIP transcription fac 20.8 4.8E+02 0.01 23.5 7.2 25 177-201 47-71 (135)
176 KOG4497 Uncharacterized conser 20.6 93 0.002 32.2 3.1 75 48-127 163-257 (447)
177 PF10458 Val_tRNA-synt_C: Valy 20.5 3.9E+02 0.0086 20.3 7.9 25 161-185 2-26 (66)
178 PF10376 Mei5: Double-strand r 20.4 7.3E+02 0.016 23.8 9.0 58 163-220 138-196 (221)
179 PF10393 Matrilin_ccoil: Trime 20.2 2.6E+02 0.0057 20.6 4.6 18 190-207 29-46 (47)
No 1
>KOG0627 consensus Heat shock transcription factor [Transcription]
Probab=100.00 E-value=6.7e-47 Score=366.73 Aligned_cols=188 Identities=51% Similarity=0.882 Sum_probs=171.7
Q ss_pred CCCchHHHHHhhccCCCCCCceEEcCCCCeEEEeCCccchhcccCCCCCCCCcchHHhhhccccccccC--CCCceeecC
Q 017694 44 GPPPFLTKTYEMVDDPNTNEVVSWSRGGVSFVVWDPHAFSTSLLPRHFKHSNFSSFVRQLNTYGFRKID--PDRWEFSNE 121 (367)
Q Consensus 44 ~~~~Fl~KLy~mv~dp~~~~iIsWs~~G~sFvI~d~~~F~~~vLP~~Fkh~nfsSFvRQLN~YGFrKv~--~d~~eF~h~ 121 (367)
++++|++|||.||+||+++++|+|+++|+||||||+..|++.+||+||||+||+|||||||+||||||+ +++|||+|+
T Consensus 11 ~~~~Fl~K~y~~v~Dps~~~iisWs~~g~sFvv~d~~~F~~~~Lp~~FKh~NfsSFvRQLN~YgFrKv~~~~~~wEF~n~ 90 (304)
T KOG0627|consen 11 GPPPFLEKLYEMVEDPSTDEIISWSPSGNSFVIWNPEEFAKVLLPLYFKHNNFSSFVRQLNMYGFRKVDFKSDRWEFSNP 90 (304)
T ss_pred CCCcHHHHHHHHhcCCCCCCceEECCCCCccccCCHHHHHHHHhHHhccccCccceeeeecccceeecCCCCCceeecCh
Confidence 789999999999999999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred CccccccccccccccccCCCCCCC---CCCCC------CCccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017694 122 GFLRGERHLLKNIKRRKAPSQPLP---PPQAL------GPCVELGRFGLDGEFERLIRDKQFLMMELVKLRQQQQNTRAY 192 (367)
Q Consensus 122 ~F~Rg~~~LL~~IkRk~~~s~~~~---~qq~~------~~~~Ev~~~~l~~Ei~~LKrd~~~L~~El~~LRQqqq~~~~~ 192 (367)
+|+||+++||++|+||++...... ..... ..++.....+++.++.+|+++++.||.|+++||++++.++.+
T Consensus 91 ~F~rg~~~LL~~I~rrk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~lr~~~~~~~~~ 170 (304)
T KOG0627|consen 91 CFVRGQKLLLKNIKRRKSASRIFQTKDSPKSFERQLNLYGFVKIRQLNLKESAKSLSKENEVLQRELVELRQQQDALRAT 170 (304)
T ss_pred hHhcChHHHHHHHhhhccccCCcccccCcchhhhhhhHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 999999999999999999854432 11111 122334556899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHH
Q 017694 193 LQAMELRLEGTEKKQQQMMSFLARAMQNPAFLQQLVQQK 231 (367)
Q Consensus 193 l~~Me~RL~~~E~kQqqmm~FLak~~qnp~fl~qLv~q~ 231 (367)
++.+.+++..++.+|++|+.|+++++++|.|+.++.+..
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 209 (304)
T KOG0627|consen 171 IQTSKRVVKSKETRNSLILSFLARDVQSPGFLNQAPQRQ 209 (304)
T ss_pred HHhhccccCchhhHHHHHhhHHHhhccCccchhcccchh
Confidence 999999999999999999999999999999999998864
No 2
>smart00415 HSF heat shock factor.
Probab=100.00 E-value=6e-35 Score=244.41 Aligned_cols=94 Identities=65% Similarity=1.264 Sum_probs=90.7
Q ss_pred CCCchHHHHHhhccCCCCCCceEEcCCCCeEEEeCCccchhcccCCCCCCCCcchHHhhhccccccccCC----------
Q 017694 44 GPPPFLTKTYEMVDDPNTNEVVSWSRGGVSFVVWDPHAFSTSLLPRHFKHSNFSSFVRQLNTYGFRKIDP---------- 113 (367)
Q Consensus 44 ~~~~Fl~KLy~mv~dp~~~~iIsWs~~G~sFvI~d~~~F~~~vLP~~Fkh~nfsSFvRQLN~YGFrKv~~---------- 113 (367)
.+|+|+.|||+||+||++++||+|+++|++|+|+|+..|.+.|||+||+|+||+||+||||+|||+|+..
T Consensus 1 ~~~~F~~kL~~~l~~~~~~~iI~W~~~G~~f~I~d~~~f~~~vLp~~Fk~~~~~SF~RqLn~yGF~k~~~~~~~~~~~~~ 80 (105)
T smart00415 1 QPPPFLTKLYLLVEDPSTDKIISWSPSGKSFVIWDPEEFAKNLLPRYFKHNNFSSFVRQLNMYGFRKVDPEFQGILYNFT 80 (105)
T ss_pred CCCcHHHHHHHHHhCCCCCCEEEECCCCCEEEEcCHHHHHHHHHHHhcCCCCHHHHHHHHHhcCCEEeccccccccccCC
Confidence 3689999999999999999999999999999999999999999999999999999999999999999865
Q ss_pred -CCceeecCCccccccccccccccc
Q 017694 114 -DRWEFSNEGFLRGERHLLKNIKRR 137 (367)
Q Consensus 114 -d~~eF~h~~F~Rg~~~LL~~IkRk 137 (367)
+.|+|+|++|+||+++||.+|+||
T Consensus 81 ~~~~~F~h~~F~Rg~~~lL~~I~Rk 105 (105)
T smart00415 81 SDQWEFANPDFVRGQPELLRNIKRK 105 (105)
T ss_pred CCceEEECcCccCcCHHHHHhCcCC
Confidence 789999999999999999999997
No 3
>PF00447 HSF_DNA-bind: HSF-type DNA-binding; InterPro: IPR000232 Heat shock factor (HSF) is a transcriptional activator of heat shock genes []: it binds specifically to heat shock promoter elements, which are palindromic sequences rich with repetitive purine and pyrimidine motifs []. Under normal conditions, HSF is a homo-trimeric cytoplasmic protein, but heat shock activation results in relocalisation to the nucleus []. Each HSF monomer contains one C-terminal and three N-terminal leucine zipper repeats []. Point mutations in these regions result in disruption of cellular localisation, rendering the protein constitutively nuclear []. Two sequences flanking the N-terminal zippers fit the consensus of a bi- partite nuclear localisation signal (NLS). Interaction between the N- and C-terminal zippers may result in a structure that masks the NLS sequences: following activation of HSF, these may then be unmasked, resulting in relocalisation of the protein to the nucleus []. The DNA-binding component of HSF lies to the N terminus of the first NLS region, and is referred to as the HSF domain.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1FBQ_B 1FYL_B 1FBS_A 1FYM_B 3HTS_B 2HTS_A 3HSF_A 1FBU_B 1FYK_A 2LDU_A ....
Probab=100.00 E-value=3.7e-35 Score=243.91 Aligned_cols=93 Identities=54% Similarity=1.033 Sum_probs=81.6
Q ss_pred chHHHHHhhccCCCCCCceEEcCCCCeEEEeCCccchhcccCCCCCCCCcchHHhhhccccccccCCC---------Cce
Q 017694 47 PFLTKTYEMVDDPNTNEVVSWSRGGVSFVVWDPHAFSTSLLPRHFKHSNFSSFVRQLNTYGFRKIDPD---------RWE 117 (367)
Q Consensus 47 ~Fl~KLy~mv~dp~~~~iIsWs~~G~sFvI~d~~~F~~~vLP~~Fkh~nfsSFvRQLN~YGFrKv~~d---------~~e 117 (367)
.||.|||+||+||+++++|+|+++|++|||+|+..|++.|||+||+|+||+||+||||+|||+|+... .|+
T Consensus 1 ~F~~kL~~~l~~~~~~~~I~W~~~G~~fiI~d~~~f~~~vLp~~F~~~~~~SF~RQLn~yGF~k~~~~~~~~~~~~~~~~ 80 (103)
T PF00447_consen 1 KFLSKLYEMLEDPENSDIIRWSPDGDSFIIHDPEEFEKEVLPKYFKHSNFSSFVRQLNMYGFKKVSSDSNQSSLSSNIWE 80 (103)
T ss_dssp HHHHHHHHHHCTTTTTTTCEECTTSSEEEES-HHHHHHHTHHHHSST--HHHHHHHHHHTTEEECC-SSCTTSSTTTTEE
T ss_pred ChHHHHHHHHcCCCCCCEEEEeCCCCEEEEeecHHHhhhccccccCccccceeeeEeeeeeeEEEecCccccccCCCCeE
Confidence 59999999999999999999999999999999999999999999999999999999999999999643 399
Q ss_pred eecCCccccccccccccccccC
Q 017694 118 FSNEGFLRGERHLLKNIKRRKA 139 (367)
Q Consensus 118 F~h~~F~Rg~~~LL~~IkRk~~ 139 (367)
|+|++|+||++++|..|+|+++
T Consensus 81 f~h~~F~r~~~~lL~~I~r~~~ 102 (103)
T PF00447_consen 81 FYHPNFRRGQPDLLSKIKRRKS 102 (103)
T ss_dssp EEETT-BTTBCCCTTTS---TT
T ss_pred ECCcCccCCCHHHHhhCccCCC
Confidence 9999999999999999999976
No 4
>COG5169 HSF1 Heat shock transcription factor [Transcription]
Probab=99.98 E-value=2.5e-33 Score=270.56 Aligned_cols=143 Identities=39% Similarity=0.714 Sum_probs=116.0
Q ss_pred CCCchHHHHHhhccCCCCCCceEEcCCCCeEEEeCCccchhcccCCCCCCCCcchHHhhhccccccccC----------C
Q 017694 44 GPPPFLTKTYEMVDDPNTNEVVSWSRGGVSFVVWDPHAFSTSLLPRHFKHSNFSSFVRQLNTYGFRKID----------P 113 (367)
Q Consensus 44 ~~~~Fl~KLy~mv~dp~~~~iIsWs~~G~sFvI~d~~~F~~~vLP~~Fkh~nfsSFvRQLN~YGFrKv~----------~ 113 (367)
.++.|+.|||.||++|++.++|+|+++|+||||+|+..|.+.|||+||||+||+|||||||+||||||. .
T Consensus 9 ~~~~FV~KLy~iLe~~e~~k~I~Ws~~G~sfvI~~~~~F~~~iLpr~FKh~NfaSFVRQLN~YgFhKv~h~~~~~~~~n~ 88 (282)
T COG5169 9 QPKEFVHKLYQILEEPEYYKLIQWSPDGRSFVILDPEEFTKVILPRYFKHGNFASFVRQLNKYGFHKVSHKSGQRSYYNE 88 (282)
T ss_pred chhHHHHHHHHHhcCcccCCceEECCCCCEEEEeCcchhhhhhhhhhhcccCHHHHHHHHHhcCcEeccCCcccccccch
Confidence 467999999999999999999999999999999999999999999999999999999999999999996 1
Q ss_pred CCceeecCCccccccccccccccccCCCCCCCCCCCCCCc---cccCC-----CCchHHHHHHHHHHHHHHHHHHHHHHH
Q 017694 114 DRWEFSNEGFLRGERHLLKNIKRRKAPSQPLPPPQALGPC---VELGR-----FGLDGEFERLIRDKQFLMMELVKLRQQ 185 (367)
Q Consensus 114 d~~eF~h~~F~Rg~~~LL~~IkRk~~~s~~~~~qq~~~~~---~Ev~~-----~~l~~Ei~~LKrd~~~L~~El~~LRQq 185 (367)
..|+|.|++|++|..++|++|+|++.++...........| .++.. ..+..++..|...++.++..+..|+.-
T Consensus 89 ~~wef~~~nF~~g~~~~L~~i~r~ka~~~~~~~~~~s~~~~~~~~~~~~i~~~~~~~~~~S~l~~~~~~~~~~~~~lk~~ 168 (282)
T COG5169 89 NVWEFGNKNFQLGMIELLKKIKRKKAPSNRVDSNNESKDAMMNIEVENIILPQSELYNSLSSLSNVNQTLLLYLNELKEY 168 (282)
T ss_pred hheeecCchhccCcHHHHHHhhhhhcCcccccccCCCCccccchhhhhhhchhcccCcchhHHhhhhHHHhhhhccccch
Confidence 2499999999999999999999988875433211111111 12222 245667788888888888777777654
Q ss_pred H
Q 017694 186 Q 186 (367)
Q Consensus 186 q 186 (367)
+
T Consensus 169 ~ 169 (282)
T COG5169 169 N 169 (282)
T ss_pred h
Confidence 3
No 5
>PF03310 Cauli_DNA-bind: Caulimovirus DNA-binding protein; InterPro: IPR004986 The gene III product (P15) of cauliflower mosaic virus (CaMV) is a DNA binding protein in which the DNA binding activity is located on its C-terminal part. A family of related proteins is expressed by other members of the Caulimoviridae.; GO: 0003677 DNA binding; PDB: 3F6N_A 3K4T_D.
Probab=97.30 E-value=0.00093 Score=58.06 Aligned_cols=79 Identities=24% Similarity=0.363 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHHHhcccccCCCCCC
Q 017694 173 QFLMMELVKLRQQQQNTRAYLQAMELRLEGTEKKQQQMMSFLARAMQNPAFLQQLVQQKEKRKELEEAMTKKRRRPIDQG 252 (367)
Q Consensus 173 ~~L~~El~~LRQqqq~~~~~l~~Me~RL~~~E~kQqqmm~FLak~~qnp~fl~qLv~q~~~~k~l~~~~~kKRr~~~~~~ 252 (367)
+..+.||..+++.+..+...+.+|.+++..+++.+++|..+-|+++++ |...+.+-+.+|+|.+++.++++..+-..
T Consensus 2 ~~~~kEi~~l~~~lk~~~~~i~ailek~~s~~~~~e~lEsiAAKIIkD---isdkIdkCeC~Kelle~Lk~q~d~~iip~ 78 (121)
T PF03310_consen 2 ATIIKEISELIQELKKIESDIKAILEKLQSTEQDQENLESIAAKIIKD---ISDKIDKCECNKELLEALKKQPDKQIIPS 78 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS--HHHHHHHHHHHHHHH---HHHHHHT-TTHHHHHHHHT----------
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHH---HHHHHHhchhhHHHHHHHhcCCCCCcCCC
Confidence 456789999999999999999999999999999999999999999997 77788877778999998888776544433
Q ss_pred CC
Q 017694 253 PI 254 (367)
Q Consensus 253 ~~ 254 (367)
|.
T Consensus 79 ~~ 80 (121)
T PF03310_consen 79 PE 80 (121)
T ss_dssp --
T ss_pred CC
Confidence 33
No 6
>PF00178 Ets: Ets-domain; InterPro: IPR000418 Transcription factors are protein molecules that bind to specific DNA sequences in the genome, resulting in the induction or inhibition of gene transcription []. The ets oncogene is such a factor, possessing a region of 85-90 amino acids known as the ETS (erythroblast transformation specific) domain [, , ]. This domain is rich in positively-charged and aromatic residues, and binds to purine-rich segments of DNA. The ETS domain has been identified in other transcription factors such as PU.1, human erg, human elf-1, human elk-1, GA binding protein, and a number of others [, , ]. It is generally localized at the C terminus of the protein, with the exception of ELF-1, ELK-1, ELK-3, ELK-4 and ERF where it is found at the N terminus. NMR-analysis of the structure of the Ets domains revealed that it contains three alpha-helixes (1-3) and four-stranded beta-sheets (1-4) arranged in the order alpha1-beta1-beta2-alpha2-alpha3-beta3-beta4 forming a winged helix-turn-helix (wHTH) topology []. The third alpha-helix is responsive to contact to the major groove of the DNA. Different members of the Ets family proteins display distinct DNA binding specificities. The Ets domains and the flanking amino acid sequences of the proteins influence the binding affinity, and the alteration of a single amino acid in the Ets domain can change its DNA binding specificities. Avian leukemia virus E26 is a replication defective retrovirus that induces a mixed erythroid/myeloid leukemia in chickens.This virus carries two distinct oncogenes: v-myb and v-ets. The ets portion of this oncogene is required for the induction of erythroblastosis. V-ets and c-ets-1, its cellular progenitor, have been shown [] to be nuclear DNA-binding proteins. Ets-1 differs slightly from v-ets at its carboxy-terminal region. In most species where it has been sequenced, c-ets-1 exists in various isoforms generated by alternative splicing and differential phosphorylation.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1DUX_F 4AVP_B 1HBX_G 1BC7_C 1K6O_A 1BC8_C 1PUE_E 1FLI_A 2DAO_A 1WWX_A ....
Probab=94.83 E-value=0.0086 Score=49.06 Aligned_cols=59 Identities=22% Similarity=0.463 Sum_probs=45.6
Q ss_pred HHHHHhhccCCCCCCceEEcC-CCCeEEEeCCccchhccc-CCCCCCCCcchHHhhhcccc
Q 017694 49 LTKTYEMVDDPNTNEVVSWSR-GGVSFVVWDPHAFSTSLL-PRHFKHSNFSSFVRQLNTYG 107 (367)
Q Consensus 49 l~KLy~mv~dp~~~~iIsWs~-~G~sFvI~d~~~F~~~vL-P~~Fkh~nfsSFvRQLN~YG 107 (367)
..=|.++|.|++..++|+|.. .+.-|.|.||+++++.-- -+--..-+|.++-|-|..|.
T Consensus 5 w~FLl~LL~d~~~~~~I~Wt~~~~~eFki~d~~~vA~lWG~~k~~~~m~yeklsR~LR~yy 65 (85)
T PF00178_consen 5 WQFLLELLEDPSNSDIIAWTGKRGGEFKIVDPEAVARLWGKHKNRPNMNYEKLSRALRYYY 65 (85)
T ss_dssp HHHHHHHHHSGGGTTTEEEEETSTTEEEESSHHHHHHHHHHHTTSTT-SHHHHHHHHHHHH
T ss_pred HHHHHHHhcCccCCCeeEeeccCCCeEEecCHHHHHHHHHHHcCCccccHHHHHHHHHHHh
Confidence 344678899999999999999 999999999999986321 11223457899999998874
No 7
>smart00413 ETS erythroblast transformation specific domain. variation of the helix-turn-helix motif
Probab=92.26 E-value=0.1 Score=43.22 Aligned_cols=57 Identities=19% Similarity=0.422 Sum_probs=43.9
Q ss_pred HHHhhccCCCCCCceEEcC-CCCeEEEeCCccchhcccC-CCCCCCCcchHHhhhcccc
Q 017694 51 KTYEMVDDPNTNEVVSWSR-GGVSFVVWDPHAFSTSLLP-RHFKHSNFSSFVRQLNTYG 107 (367)
Q Consensus 51 KLy~mv~dp~~~~iIsWs~-~G~sFvI~d~~~F~~~vLP-~~Fkh~nfsSFvRQLN~YG 107 (367)
=|.++|.||++.++|+|.. ++.-|.+.|+++.++.--. +-=..-||..+-|-|..|-
T Consensus 7 FL~~LL~d~~~~~~I~W~~k~~g~Fkl~~~~~vA~lWG~~Knk~~M~YeklSRaLRyyy 65 (87)
T smart00413 7 FLLDLLLDPENGDIIRWTDRDGGEFKLVDPEEVARLWGQRKNKPNMNYEKLSRALRYYY 65 (87)
T ss_pred HHHHHHcCccCCCeEEeeCCCCCEEEecCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHH
Confidence 4678999999999999998 6889999999887764221 1113467888888888773
No 8
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=86.93 E-value=4.5 Score=32.26 Aligned_cols=43 Identities=23% Similarity=0.200 Sum_probs=23.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017694 161 LDGEFERLIRDKQFLMMELVKLRQQQQNTRAYLQAMELRLEGT 203 (367)
Q Consensus 161 l~~Ei~~LKrd~~~L~~El~~LRQqqq~~~~~l~~Me~RL~~~ 203 (367)
|..+++.||.++..|..|...|+++.+.++....+-.+||+++
T Consensus 23 Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~L 65 (72)
T PF06005_consen 23 LQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSL 65 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666655555555555555555555455555555443
No 9
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=84.60 E-value=4.1 Score=45.21 Aligned_cols=79 Identities=23% Similarity=0.336 Sum_probs=58.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHH--HHHHHHHHH
Q 017694 161 LDGEFERLIRDKQFLMMELVKLRQQQQNTRAYLQAMELRLEGTEKKQQQMMSFLARAMQNPAFLQQLVQ--QKEKRKELE 238 (367)
Q Consensus 161 l~~Ei~~LKrd~~~L~~El~~LRQqqq~~~~~l~~Me~RL~~~E~kQqqmm~FLak~~qnp~fl~qLv~--q~~~~k~l~ 238 (367)
+...+..|+..++.-..|+..++++...++.....+.+|+..+..+|+.++.-+.++++....-.-.+. .++++++|+
T Consensus 563 i~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~l~~~~P~LS~AEr~~~~EL~ 642 (717)
T PF10168_consen 563 IQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQLLNSQLPVLSEAEREFKKELE 642 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHH
Confidence 455567788888888888888999998898888999999999999999999988887775432111111 344466665
Q ss_pred H
Q 017694 239 E 239 (367)
Q Consensus 239 ~ 239 (367)
.
T Consensus 643 ~ 643 (717)
T PF10168_consen 643 R 643 (717)
T ss_pred H
Confidence 3
No 10
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=84.57 E-value=3.7 Score=32.33 Aligned_cols=20 Identities=30% Similarity=0.443 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 017694 185 QQQNTRAYLQAMELRLEGTE 204 (367)
Q Consensus 185 qqq~~~~~l~~Me~RL~~~E 204 (367)
+......++.+|-.||+.+|
T Consensus 43 kne~Ar~rvEamI~RLk~le 62 (65)
T TIGR02449 43 KNEQARQKVEAMITRLKALE 62 (65)
T ss_pred HHHHHHHHHHHHHHhhhhhc
Confidence 33444445555555555554
No 11
>KOG3806 consensus Predicted transcription factor [Transcription]
Probab=84.08 E-value=1.2 Score=41.38 Aligned_cols=63 Identities=21% Similarity=0.446 Sum_probs=46.6
Q ss_pred CCCchHHHHHhhccCCCCCCceEEcC-CCCeEEEeCCccchhcccCC-CCCCCCcchHHhhhccc
Q 017694 44 GPPPFLTKTYEMVDDPNTNEVVSWSR-GGVSFVVWDPHAFSTSLLPR-HFKHSNFSSFVRQLNTY 106 (367)
Q Consensus 44 ~~~~Fl~KLy~mv~dp~~~~iIsWs~-~G~sFvI~d~~~F~~~vLP~-~Fkh~nfsSFvRQLN~Y 106 (367)
+.-.-..=|-++|+|++..++|+|.. +|--|.+.||++-++.---+ -=.+-||.-.-|-|..|
T Consensus 67 g~iqLwqFLleLl~d~~~~~~I~Wtg~~g~EFkl~dp~eVArlWG~rK~kp~MNYdKLSRaLRyy 131 (177)
T KOG3806|consen 67 GQIQLWQFLLELLQDESNAHIIAWTGKDGLEFKLVDPDEVARLWGARKNKPNMNYDKLSRALRYY 131 (177)
T ss_pred chhhHHHHHHHHHhCcccCCeeEEeCCCCceEEecCHHHHHHHHhhhhCCCCCCHHHHHHHHHHH
Confidence 33445555667889999999999999 78899999999998754222 12246777777887776
No 12
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=82.16 E-value=6 Score=32.29 Aligned_cols=42 Identities=21% Similarity=0.288 Sum_probs=25.5
Q ss_pred chHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Q 017694 161 LDGEFERLIRDKQFLMMELVK-------LRQQQQNTRAYLQAMELRLEG 202 (367)
Q Consensus 161 l~~Ei~~LKrd~~~L~~El~~-------LRQqqq~~~~~l~~Me~RL~~ 202 (367)
|.-||+.||.++..|..|+.. |+++.+.++.+..+-++||++
T Consensus 23 LqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~ 71 (79)
T PRK15422 23 LQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQA 71 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556777777777777777666 444444444444455555544
No 13
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=80.99 E-value=11 Score=36.06 Aligned_cols=59 Identities=20% Similarity=0.339 Sum_probs=41.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 017694 161 LDGEFERLIRDKQFLMMELVKLRQQQQNTRAYLQAMELRLEGTEKKQQQMMSFLARAMQ 219 (367)
Q Consensus 161 l~~Ei~~LKrd~~~L~~El~~LRQqqq~~~~~l~~Me~RL~~~E~kQqqmm~FLak~~q 219 (367)
+..++..|+++.+.|...+.++.....+.+.++..+++++..++...++|..+|.+++.
T Consensus 54 L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~ 112 (251)
T PF11932_consen 54 LLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQMID 112 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666666666666666666666667777777888888888888888777776554
No 14
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=80.90 E-value=6.9 Score=28.49 Aligned_cols=40 Identities=23% Similarity=0.374 Sum_probs=27.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017694 161 LDGEFERLIRDKQFLMMELVKLRQQQQNTRAYLQAMELRL 200 (367)
Q Consensus 161 l~~Ei~~LKrd~~~L~~El~~LRQqqq~~~~~l~~Me~RL 200 (367)
++.+.+.||+....|..+..+|.++.+.+.+++..+...+
T Consensus 3 lE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl 42 (45)
T PF02183_consen 3 LERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEKL 42 (45)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4556677777777777777777777777777776665554
No 15
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=77.35 E-value=19 Score=32.34 Aligned_cols=57 Identities=25% Similarity=0.328 Sum_probs=44.9
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017694 160 GLDGEFERLIRDKQFLMMELVKLRQQQQNTRAYLQAMELRLEGTEKKQQQMMSFLAR 216 (367)
Q Consensus 160 ~l~~Ei~~LKrd~~~L~~El~~LRQqqq~~~~~l~~Me~RL~~~E~kQqqmm~FLak 216 (367)
.|..++..+....+.|-.|++.++.+..++...++.|.+|+...|..+.-+.+.|..
T Consensus 56 ~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~~~~~~~l~~ 112 (140)
T PF10473_consen 56 TLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELESLNSSLENLLQE 112 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 366777777777788888888888888888888888888888888877766655543
No 16
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=77.09 E-value=17 Score=33.44 Aligned_cols=53 Identities=19% Similarity=0.286 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017694 165 FERLIRDKQFLMMELVKLRQQQQNTRAYLQAMELRLEGTEKKQQQMMSFLARA 217 (367)
Q Consensus 165 i~~LKrd~~~L~~El~~LRQqqq~~~~~l~~Me~RL~~~E~kQqqmm~FLak~ 217 (367)
...++.++..|..|+..|+++...+..++..++.++..++..-+.|+..+-++
T Consensus 99 ~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~RA 151 (161)
T TIGR02894 99 DQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIMDRA 151 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566777888888888888888888888888888888777777776666543
No 17
>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function.; PDB: 3E98_B.
Probab=76.65 E-value=10 Score=35.68 Aligned_cols=77 Identities=13% Similarity=0.251 Sum_probs=37.8
Q ss_pred ecCCccccccccccccccccCCCCCCCCCCCCCCccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017694 119 SNEGFLRGERHLLKNIKRRKAPSQPLPPPQALGPCVELGRFGLDGEFERLIRDKQFLMMELVKLRQQQQNTRAYLQAMEL 198 (367)
Q Consensus 119 ~h~~F~Rg~~~LL~~IkRk~~~s~~~~~qq~~~~~~Ev~~~~l~~Ei~~LKrd~~~L~~El~~LRQqqq~~~~~l~~Me~ 198 (367)
.||.|-..+++||..|+=..+. +.. | ...-..+..||++.+.++.++..|-+
T Consensus 17 ~~PdFf~~~~~ll~~l~~ph~~----------~~a-----------v-------SL~erQ~~~LR~~~~~L~~~l~~Li~ 68 (225)
T PF04340_consen 17 QHPDFFERHPELLAELRLPHPS----------GGA-----------V-------SLVERQLERLRERNRQLEEQLEELIE 68 (225)
T ss_dssp ----------------------------------H-----------H-------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCcHHHHhCHHHHHHcCCCCCC----------CCc-----------c-------cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7999999999999998742111 001 1 11223466677788888888889999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCcHH
Q 017694 199 RLEGTEKKQQQMMSFLARAMQNPAF 223 (367)
Q Consensus 199 RL~~~E~kQqqmm~FLak~~qnp~f 223 (367)
.-+..|..++++..+..+++.-.++
T Consensus 69 ~Ar~Ne~~~~~~~~l~l~LL~a~sl 93 (225)
T PF04340_consen 69 NARENEAIFQRLHRLVLALLAARSL 93 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC--SH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCH
Confidence 9999999999998888888876543
No 18
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=75.47 E-value=20 Score=38.08 Aligned_cols=54 Identities=20% Similarity=0.262 Sum_probs=32.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Q 017694 161 LDGEFERLIRDKQFLMMELVKLRQQQQNTRAYLQA-MELRLEGTEKKQQQMMSFL 214 (367)
Q Consensus 161 l~~Ei~~LKrd~~~L~~El~~LRQqqq~~~~~l~~-Me~RL~~~E~kQqqmm~FL 214 (367)
+..++..|.++|+.|..|..+||+..+++..+++. ++.--+.+.+.++|+-.-+
T Consensus 71 ~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~ 125 (472)
T TIGR03752 71 LRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSER 125 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 56667777777778888888887777666666643 2222223344444543333
No 19
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=75.37 E-value=36 Score=26.84 Aligned_cols=56 Identities=23% Similarity=0.197 Sum_probs=41.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017694 161 LDGEFERLIRDKQFLMMELVKLRQQQQNTRAYLQAMELRLEGTEKKQQQMMSFLAR 216 (367)
Q Consensus 161 l~~Ei~~LKrd~~~L~~El~~LRQqqq~~~~~l~~Me~RL~~~E~kQqqmm~FLak 216 (367)
++..|++|=.-.+-|..|...||+++.....+-..+.++...+-.|...|++-|..
T Consensus 5 Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RLk~ 60 (65)
T TIGR02449 5 LAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITRLKA 60 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 56677777777777777777777777777777777777877777777777766643
No 20
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=74.41 E-value=23 Score=28.58 Aligned_cols=29 Identities=24% Similarity=0.273 Sum_probs=17.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017694 161 LDGEFERLIRDKQFLMMELVKLRQQQQNT 189 (367)
Q Consensus 161 l~~Ei~~LKrd~~~L~~El~~LRQqqq~~ 189 (367)
|.-||+.||..++.|..|+..+++...++
T Consensus 23 LQmEieELKEknn~l~~e~q~~q~~reaL 51 (79)
T COG3074 23 LQMEIEELKEKNNSLSQEVQNAQHQREAL 51 (79)
T ss_pred HHHHHHHHHHHhhHhHHHHHHHHHHHHHH
Confidence 44566777777777776666655554433
No 21
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=74.38 E-value=23 Score=30.87 Aligned_cols=55 Identities=25% Similarity=0.427 Sum_probs=36.6
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017694 160 GLDGEFERLIRDKQFLMMELVKLRQQQQ---NTRAYLQAMELRLEGTEKKQQQMMSFL 214 (367)
Q Consensus 160 ~l~~Ei~~LKrd~~~L~~El~~LRQqqq---~~~~~l~~Me~RL~~~E~kQqqmm~FL 214 (367)
.+..++.+|.+.+..+..||++|-.+.. ....++..++..+..++.|.+-++..|
T Consensus 34 ~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~Lell 91 (120)
T PF12325_consen 34 SLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELL 91 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3556667777777777788887766653 344466667777777777766665554
No 22
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=74.15 E-value=54 Score=32.80 Aligned_cols=51 Identities=24% Similarity=0.436 Sum_probs=42.4
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017694 160 GLDGEFERLIRDKQFLMMELVKLRQQQQNTRAYLQAMELRLEGTEKKQQQM 210 (367)
Q Consensus 160 ~l~~Ei~~LKrd~~~L~~El~~LRQqqq~~~~~l~~Me~RL~~~E~kQqqm 210 (367)
.++.++..|+.+...|..|+..|.++...+..++..++..+..++....+.
T Consensus 47 ~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~ 97 (314)
T PF04111_consen 47 ELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEY 97 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367889999999999999999999999999999988888887766554443
No 23
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=70.49 E-value=34 Score=38.11 Aligned_cols=26 Identities=23% Similarity=0.236 Sum_probs=16.5
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHH
Q 017694 160 GLDGEFERLIRDKQFLMMELVKLRQQ 185 (367)
Q Consensus 160 ~l~~Ei~~LKrd~~~L~~El~~LRQq 185 (367)
.|+.+|.+||.|.+...+-=..||++
T Consensus 422 rLE~dvkkLraeLq~~Rq~E~ELRsq 447 (697)
T PF09726_consen 422 RLEADVKKLRAELQSSRQSEQELRSQ 447 (697)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 37778888887766555544455554
No 24
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=70.13 E-value=38 Score=30.36 Aligned_cols=57 Identities=18% Similarity=0.215 Sum_probs=28.6
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Q 017694 160 GLDGEFERLIRDKQFLMMELVKLRQQQQNTRAYL--QAMELRLEGTEKKQQQMMSFLAR 216 (367)
Q Consensus 160 ~l~~Ei~~LKrd~~~L~~El~~LRQqqq~~~~~l--~~Me~RL~~~E~kQqqmm~FLak 216 (367)
.|+.++..|+.+...|..++..|+.+...+...+ ..|...+..++....+|-.-|..
T Consensus 76 ~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~ 134 (169)
T PF07106_consen 76 ELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEK 134 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666666666666666666665554443332 22333344444444444444433
No 25
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=66.53 E-value=43 Score=26.03 Aligned_cols=45 Identities=27% Similarity=0.310 Sum_probs=32.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017694 161 LDGEFERLIRDKQFLMMELVKLRQQQQNTRAYLQAMELRLEGTEKKQQQ 209 (367)
Q Consensus 161 l~~Ei~~LKrd~~~L~~El~~LRQqqq~~~~~l~~Me~RL~~~E~kQqq 209 (367)
|+.||. -++.|..||.+.+-.+..+..+|+..+.|.+.++.....
T Consensus 6 L~~Eir----akQ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~ 50 (61)
T PF08826_consen 6 LEAEIR----AKQAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIER 50 (61)
T ss_dssp HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555664 477888899888888877777777777777666655444
No 26
>PRK06800 fliH flagellar assembly protein H; Validated
Probab=64.99 E-value=1.1e+02 Score=29.10 Aligned_cols=71 Identities=24% Similarity=0.341 Sum_probs=43.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHhhCcH
Q 017694 161 LDGEFERLIRDKQFLMMELVKLRQQQQNTRA------------------YLQAMELRLEGTEKKQQQMMSFLARAMQNPA 222 (367)
Q Consensus 161 l~~Ei~~LKrd~~~L~~El~~LRQqqq~~~~------------------~l~~Me~RL~~~E~kQqqmm~FLak~~qnp~ 222 (367)
+..+...|...+..|-+|+..||++||.+.+ +++.|+..-..-++.|+++.--.+..+=+.+
T Consensus 36 ~~~d~~~L~~~Q~~L~~e~~~l~~eqQ~l~~er~~l~~er~~~~~~~~e~~~~~e~~r~~fekekqq~~~~~t~~LwdeS 115 (228)
T PRK06800 36 IQKDHEELLAQQKSLHKELNQLRQEQQKLERERQQLLADREQFQEHVQQQMKEIEAARQQFQKEQQETAYEWTELLWDQS 115 (228)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666777777777777766655443 4555666666777788887666666555544
Q ss_pred H--HHHHHHHH
Q 017694 223 F--LQQLVQQK 231 (367)
Q Consensus 223 f--l~qLv~q~ 231 (367)
| .-++|+|.
T Consensus 116 i~LAEkIV~Qa 126 (228)
T PRK06800 116 FQLAEKIVNQA 126 (228)
T ss_pred HHHHHHHHHHh
Confidence 3 34555543
No 27
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=63.78 E-value=18 Score=26.39 Aligned_cols=33 Identities=27% Similarity=0.320 Sum_probs=22.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017694 161 LDGEFERLIRDKQFLMMELVKLRQQQQNTRAYL 193 (367)
Q Consensus 161 l~~Ei~~LKrd~~~L~~El~~LRQqqq~~~~~l 193 (367)
|....+.|+.++..|..|...|+.+.+.+...+
T Consensus 10 LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl 42 (45)
T PF02183_consen 10 LKASYDSLKAEYDSLKKENEKLRAEVQELKEKL 42 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 455667777777777777777777766665544
No 28
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=59.90 E-value=43 Score=32.86 Aligned_cols=54 Identities=26% Similarity=0.227 Sum_probs=37.2
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHH
Q 017694 160 GLDGEFERLIRDKQFLMMELVKLRQQQQNTRAYLQAMELRLE-----GTEKKQQQMMSF 213 (367)
Q Consensus 160 ~l~~Ei~~LKrd~~~L~~El~~LRQqqq~~~~~l~~Me~RL~-----~~E~kQqqmm~F 213 (367)
.|+.+|..|-.+++.|..|...||.+..++-.+-+.+..+|. -++.+|++++.-
T Consensus 94 eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l~~~~~~~~~~~ 152 (292)
T KOG4005|consen 94 EMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQELAELKQQQQHNT 152 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHHHHHHhh
Confidence 478888889999999999999998877666555444444333 255566665544
No 29
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=58.38 E-value=76 Score=25.21 Aligned_cols=50 Identities=22% Similarity=0.256 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017694 164 EFERLIRDKQFLMMELVKLRQQQQNTRAYLQAMELRLEGTEKKQQQMMSF 213 (367)
Q Consensus 164 Ei~~LKrd~~~L~~El~~LRQqqq~~~~~l~~Me~RL~~~E~kQqqmm~F 213 (367)
|-+.|.+....+..-|.+||.+.......+..+..++...+..-..+-.+
T Consensus 20 EGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~ 69 (74)
T PF12329_consen 20 EGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEER 69 (74)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444555555555555555555555555555544444333
No 30
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=57.12 E-value=98 Score=24.65 Aligned_cols=42 Identities=14% Similarity=0.250 Sum_probs=21.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017694 161 LDGEFERLIRDKQFLMMELVKLRQQQQNTRAYLQAMELRLEG 202 (367)
Q Consensus 161 l~~Ei~~LKrd~~~L~~El~~LRQqqq~~~~~l~~Me~RL~~ 202 (367)
|+..|.++=.....|..|+..|+.+.......-..+.+....
T Consensus 9 LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~ 50 (72)
T PF06005_consen 9 LEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQ 50 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 444555555555666666666666554444444444433333
No 31
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=55.68 E-value=47 Score=36.22 Aligned_cols=59 Identities=17% Similarity=0.275 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCc
Q 017694 163 GEFERLIRDKQFLMMELVKLRQQQQNTRAYLQAMELRLEGTEKKQQQMMSFLARAMQNP 221 (367)
Q Consensus 163 ~Ei~~LKrd~~~L~~El~~LRQqqq~~~~~l~~Me~RL~~~E~kQqqmm~FLak~~qnp 221 (367)
..+..|++.+..=.+++..++++...++..-..+++|+..+--+|.-+|.-+.++++.|
T Consensus 588 rH~~~l~~~k~~QlQ~l~~~~eer~~i~e~a~~La~R~eea~e~qe~L~~~~~~L~~~~ 646 (741)
T KOG4460|consen 588 RHVKLLCDQKKKQLQDLSYCREERKSLREMAERLADRYEEAKEKQEDLMNRMKKLLHSF 646 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcc
Confidence 33445555555555566666666655555555666666666666666666666665543
No 32
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=53.37 E-value=1.5e+02 Score=28.25 Aligned_cols=46 Identities=17% Similarity=0.229 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017694 166 ERLIRDKQFLMMELVKLRQQQQNTRAYLQAMELRLEGTEKKQQQMM 211 (367)
Q Consensus 166 ~~LKrd~~~L~~El~~LRQqqq~~~~~l~~Me~RL~~~E~kQqqmm 211 (367)
..|..+...|..|+..|+.+...+...+...+.++..++.++.++-
T Consensus 52 ~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~ 97 (251)
T PF11932_consen 52 QELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIE 97 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444444444444444444444443
No 33
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=53.18 E-value=95 Score=25.10 Aligned_cols=50 Identities=20% Similarity=0.373 Sum_probs=30.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017694 161 LDGEFERLIRDKQFLMMELVKLRQQQQNTRAYLQAMELRLEGTEKKQQQM 210 (367)
Q Consensus 161 l~~Ei~~LKrd~~~L~~El~~LRQqqq~~~~~l~~Me~RL~~~E~kQqqm 210 (367)
|+..|.+--.....|..||..|+.+...+..+.+...+...++++..+|+
T Consensus 9 LE~KiqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneql 58 (79)
T COG3074 9 LEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQL 58 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444445677888888887777666666665555555555554443
No 34
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=52.46 E-value=50 Score=29.52 Aligned_cols=41 Identities=20% Similarity=0.280 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017694 166 ERLIRDKQFLMMELVKLRQQQQNTRAYLQAMELRLEGTEKKQQQMMSF 213 (367)
Q Consensus 166 ~~LKrd~~~L~~El~~LRQqqq~~~~~l~~Me~RL~~~E~kQqqmm~F 213 (367)
+.|.+++..|++||.+|+++...+..+ +.+...|-+++..|
T Consensus 77 ~eLE~~k~~L~qqv~~L~~e~s~~~~E-------~da~k~k~e~l~~~ 117 (135)
T KOG4196|consen 77 HELEKEKAELQQQVEKLKEENSRLRRE-------LDAYKSKYEALQNS 117 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhh
Confidence 346667777888887777776544444 44444455555555
No 35
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=51.42 E-value=84 Score=29.57 Aligned_cols=53 Identities=9% Similarity=0.218 Sum_probs=38.0
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017694 160 GLDGEFERLIRDKQFLMMELVKLRQ----QQQNTRAYLQAMELRLEGTEKKQQQMMSFLAR 216 (367)
Q Consensus 160 ~l~~Ei~~LKrd~~~L~~El~~LRQ----qqq~~~~~l~~Me~RL~~~E~kQqqmm~FLak 216 (367)
+++..|++|.. .+.++..... +--.+...+..|++||+.++.|-.+|+..|.+
T Consensus 83 nlE~kvD~lee----~fdd~~d~l~~q~eq~~~~~~~v~~~~q~~~~l~~K~D~~L~llE~ 139 (189)
T TIGR02132 83 NLEEKVDLIEE----FFDDKFDELEAQQEQAPALKKDVTKLKQDIKSLDKKLDKILELLEG 139 (189)
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHhhCchHHhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 57788887743 3444333322 22357778999999999999999999888873
No 36
>smart00338 BRLZ basic region leucin zipper.
Probab=51.36 E-value=39 Score=25.60 Aligned_cols=30 Identities=23% Similarity=0.417 Sum_probs=17.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017694 161 LDGEFERLIRDKQFLMMELVKLRQQQQNTR 190 (367)
Q Consensus 161 l~~Ei~~LKrd~~~L~~El~~LRQqqq~~~ 190 (367)
|+.++..|..++..|..++..|+++...+.
T Consensus 31 Le~~~~~L~~en~~L~~~~~~l~~e~~~lk 60 (65)
T smart00338 31 LERKVEQLEAENERLKKEIERLRRELEKLK 60 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666666666666666666655554433
No 37
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=51.31 E-value=1.2e+02 Score=26.44 Aligned_cols=62 Identities=29% Similarity=0.289 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHH
Q 017694 164 EFERLIRDKQFLMMELVKLRQQQQNTRAYLQAMELRLEGTEKKQQQMMSFLARAMQNPAFLQQLVQQ 230 (367)
Q Consensus 164 Ei~~LKrd~~~L~~El~~LRQqqq~~~~~l~~Me~RL~~~E~kQqqmm~FLak~~qnp~fl~qLv~q 230 (367)
+...|...+-.+..++..+|.+.......+..++.+....+++++.+..-. +|..+...++.
T Consensus 42 ~n~~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~~l~~~~-----s~~~l~~~L~~ 103 (150)
T PF07200_consen 42 ENEELAEQNLSLEPELEELRSQLQELYEELKELESEYQEKEQQQDELSSNY-----SPDALLARLQA 103 (150)
T ss_dssp HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH-----HHHHHHHHHHH
T ss_pred HHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC-----CHHHHHHHHHH
Confidence 334444444445555666666666666777777777777777766664332 35566555554
No 38
>COG5481 Uncharacterized conserved small protein containing a coiled-coil domain [Function unknown]
Probab=51.24 E-value=1e+02 Score=24.20 Aligned_cols=28 Identities=29% Similarity=0.394 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017694 171 DKQFLMMELVKLRQQQQNTRAYLQAMEL 198 (367)
Q Consensus 171 d~~~L~~El~~LRQqqq~~~~~l~~Me~ 198 (367)
|...+...+.+|||++.+...-+.+|++
T Consensus 5 dqaeirl~~arLrqeH~D~DaaInAmi~ 32 (67)
T COG5481 5 DQAEIRLTLARLRQEHADFDAAINAMIA 32 (67)
T ss_pred cHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 3445667899999999999988888875
No 39
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=51.15 E-value=1.7e+02 Score=25.62 Aligned_cols=10 Identities=30% Similarity=0.351 Sum_probs=5.7
Q ss_pred hhcccccccc
Q 017694 102 QLNTYGFRKI 111 (367)
Q Consensus 102 QLN~YGFrKv 111 (367)
+|-.+||-..
T Consensus 10 ~L~s~G~~~~ 19 (151)
T PF11559_consen 10 QLLSRGYPSD 19 (151)
T ss_pred HHHHCCCCCC
Confidence 3556666544
No 40
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=50.56 E-value=1.2e+02 Score=23.64 Aligned_cols=56 Identities=9% Similarity=0.148 Sum_probs=39.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017694 161 LDGEFERLIRDKQFLMMELVKLRQQQQNTRAYLQAMELRLEGTEKKQQQMMSFLAR 216 (367)
Q Consensus 161 l~~Ei~~LKrd~~~L~~El~~LRQqqq~~~~~l~~Me~RL~~~E~kQqqmm~FLak 216 (367)
+..++.+++.....+...+..+.+........+.++.++|..++.-+.=+..++..
T Consensus 4 i~e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~n~kW~~r~iiG 59 (71)
T PF10779_consen 4 IKEKLNRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKIKSNTKWIWRTIIG 59 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777777777777777777777777778888888777766665555543
No 41
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=50.23 E-value=1.5e+02 Score=32.74 Aligned_cols=43 Identities=21% Similarity=0.291 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017694 172 KQFLMMELVKLRQQQQNTRAYLQAMELRLEGTEKKQQQMMSFL 214 (367)
Q Consensus 172 ~~~L~~El~~LRQqqq~~~~~l~~Me~RL~~~E~kQqqmm~FL 214 (367)
+..|..||.+||-+.+.+..+|..++..+...|...++|..-+
T Consensus 81 r~~L~~everLraei~~l~~~I~~~e~e~~~~e~~~~q~~~~~ 123 (632)
T PF14817_consen 81 RRELEKEVERLRAEIQELDKEIESREREVSRQEASREQMLDKI 123 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666666666666666666666666555554433
No 42
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=50.00 E-value=80 Score=24.19 Aligned_cols=33 Identities=6% Similarity=0.163 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017694 168 LIRDKQFLMMELVKLRQQQQNTRAYLQAMELRL 200 (367)
Q Consensus 168 LKrd~~~L~~El~~LRQqqq~~~~~l~~Me~RL 200 (367)
|..+...+-..+..+|.+++.+...+..+++.+
T Consensus 5 lEn~~~~~~~~i~tvk~en~~i~~~ve~i~env 37 (55)
T PF05377_consen 5 LENELPRIESSINTVKKENEEISESVEKIEENV 37 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444455566677777766666666666655
No 43
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=49.74 E-value=58 Score=27.54 Aligned_cols=33 Identities=12% Similarity=0.122 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017694 164 EFERLIRDKQFLMMELVKLRQQQQNTRAYLQAM 196 (367)
Q Consensus 164 Ei~~LKrd~~~L~~El~~LRQqqq~~~~~l~~M 196 (367)
.+..++++...+..|+.+++++++.++.++..+
T Consensus 28 ~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L 60 (105)
T PRK00888 28 DYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDL 60 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555555666666666666655555544433
No 44
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=49.61 E-value=2e+02 Score=32.26 Aligned_cols=59 Identities=24% Similarity=0.271 Sum_probs=39.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhh
Q 017694 161 LDGEFERLIRDKQFLMMELVKLRQQQQNTRAYLQAME-------LRLEGTEKKQQQMMSFLARAMQ 219 (367)
Q Consensus 161 l~~Ei~~LKrd~~~L~~El~~LRQqqq~~~~~l~~Me-------~RL~~~E~kQqqmm~FLak~~q 219 (367)
-...+.+|..|...|..||...||.=+.++.++..+. .-|..+.++..+|..-+..+.+
T Consensus 416 ~~~a~~rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~ 481 (697)
T PF09726_consen 416 EPDAISRLEADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQ 481 (697)
T ss_pred ChHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566789999999999999999998888888854322 2244444555555554444443
No 45
>PF14282 FlxA: FlxA-like protein
Probab=49.40 E-value=1.1e+02 Score=25.72 Aligned_cols=25 Identities=28% Similarity=0.356 Sum_probs=21.9
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHH
Q 017694 160 GLDGEFERLIRDKQFLMMELVKLRQ 184 (367)
Q Consensus 160 ~l~~Ei~~LKrd~~~L~~El~~LRQ 184 (367)
+.+..|..|++....|..+|..|..
T Consensus 16 ~~~~~I~~L~~Qi~~Lq~ql~~l~~ 40 (106)
T PF14282_consen 16 SSDSQIEQLQKQIKQLQEQLQELSQ 40 (106)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3588999999999999999998876
No 46
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=48.70 E-value=1e+02 Score=25.38 Aligned_cols=25 Identities=32% Similarity=0.422 Sum_probs=17.3
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHH
Q 017694 160 GLDGEFERLIRDKQFLMMELVKLRQ 184 (367)
Q Consensus 160 ~l~~Ei~~LKrd~~~L~~El~~LRQ 184 (367)
.+..+++.|+.+++.+..+|..+..
T Consensus 40 ~l~~~~e~lr~~rN~~sk~I~~~~~ 64 (108)
T PF02403_consen 40 ELQQELEELRAERNELSKEIGKLKK 64 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHhh
Confidence 3556677777777777777776544
No 47
>PRK09039 hypothetical protein; Validated
Probab=48.33 E-value=1e+02 Score=31.24 Aligned_cols=44 Identities=25% Similarity=0.252 Sum_probs=20.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017694 161 LDGEFERLIRDKQFLMMELVKLRQQQQNTRAYLQAMELRLEGTE 204 (367)
Q Consensus 161 l~~Ei~~LKrd~~~L~~El~~LRQqqq~~~~~l~~Me~RL~~~E 204 (367)
+..++..++........+|..|++|...++.++.+++..|...|
T Consensus 121 l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae 164 (343)
T PRK09039 121 LAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASE 164 (343)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445544444444444444444444444444444444444433
No 48
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=48.26 E-value=11 Score=25.19 Aligned_cols=23 Identities=17% Similarity=0.411 Sum_probs=16.3
Q ss_pred hccCCCCCCceEEcCCCCeEEEe
Q 017694 55 MVDDPNTNEVVSWSRGGVSFVVW 77 (367)
Q Consensus 55 mv~dp~~~~iIsWs~~G~sFvI~ 77 (367)
+++.+..+....||+||+.++..
T Consensus 4 ~t~~~~~~~~p~~SpDGk~i~f~ 26 (39)
T PF07676_consen 4 LTNSPGDDGSPAWSPDGKYIYFT 26 (39)
T ss_dssp ES-SSSSEEEEEE-TTSSEEEEE
T ss_pred cccCCccccCEEEecCCCEEEEE
Confidence 45666677778999999997765
No 49
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=47.97 E-value=70 Score=31.17 Aligned_cols=47 Identities=26% Similarity=0.321 Sum_probs=33.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017694 161 LDGEFERLIRDKQFLMMELVKLRQQQQNTRAYLQAMELRLEGTEKKQ 207 (367)
Q Consensus 161 l~~Ei~~LKrd~~~L~~El~~LRQqqq~~~~~l~~Me~RL~~~E~kQ 207 (367)
+..+++++++....+..|+..++.+.-....+++.+.+|+...+.++
T Consensus 36 ~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl 82 (239)
T COG1579 36 AKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKL 82 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777777777777777777777777777777666655
No 50
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=47.52 E-value=1.6e+02 Score=24.14 Aligned_cols=45 Identities=18% Similarity=0.333 Sum_probs=27.1
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017694 164 EFERLIRD-KQFLMMELVKLRQQQQNTRAYLQAMELRLEGTEKKQQ 208 (367)
Q Consensus 164 Ei~~LKrd-~~~L~~El~~LRQqqq~~~~~l~~Me~RL~~~E~kQq 208 (367)
+++++.++ ++.|..|+..|+.....+..++...++....++...+
T Consensus 9 d~e~~~~e~k~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~ 54 (80)
T PF10224_consen 9 DIEKLEKEEKEELIQEILELQDSLEALSDRVEEVKEENEKLESENE 54 (80)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444443 6777777777777766666666665555555444443
No 51
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=47.36 E-value=54 Score=24.78 Aligned_cols=27 Identities=30% Similarity=0.405 Sum_probs=12.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017694 161 LDGEFERLIRDKQFLMMELVKLRQQQQ 187 (367)
Q Consensus 161 l~~Ei~~LKrd~~~L~~El~~LRQqqq 187 (367)
|+.++..|..++..|..++..|+++.+
T Consensus 31 Le~~~~~L~~en~~L~~~~~~L~~~~~ 57 (64)
T PF00170_consen 31 LEEKVEELESENEELKKELEQLKKEIQ 57 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444443
No 52
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=46.71 E-value=1.7e+02 Score=26.84 Aligned_cols=26 Identities=19% Similarity=0.319 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017694 185 QQQNTRAYLQAMELRLEGTEKKQQQM 210 (367)
Q Consensus 185 qqq~~~~~l~~Me~RL~~~E~kQqqm 210 (367)
++..+..++..++++++.++....++
T Consensus 152 E~~~L~l~~~~~e~k~~~l~~En~~L 177 (194)
T PF08614_consen 152 ELQALQLQLNMLEEKLRKLEEENREL 177 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555666666665555554
No 53
>PRK10963 hypothetical protein; Provisional
Probab=46.70 E-value=90 Score=29.51 Aligned_cols=77 Identities=8% Similarity=0.124 Sum_probs=49.1
Q ss_pred ecCCccccccccccccccccCCCCCCCCCCCCCCccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017694 119 SNEGFLRGERHLLKNIKRRKAPSQPLPPPQALGPCVELGRFGLDGEFERLIRDKQFLMMELVKLRQQQQNTRAYLQAMEL 198 (367)
Q Consensus 119 ~h~~F~Rg~~~LL~~IkRk~~~s~~~~~qq~~~~~~Ev~~~~l~~Ei~~LKrd~~~L~~El~~LRQqqq~~~~~l~~Me~ 198 (367)
.||.|--.+++||..|+=.-+.. . .-+. .+- .+..||++.+.++.++..|-+
T Consensus 14 ~~PdFf~~h~~Ll~~L~lph~~~------g-aVSL-------~Er--------------Q~~~LR~r~~~Le~~l~~Li~ 65 (223)
T PRK10963 14 QNPDFFIRNARLVEQMRVPHPVR------G-TVSL-------VEW--------------QMARQRNHIHVLEEEMTLLME 65 (223)
T ss_pred HCchHHhhCHHHHHhccCCCCCC------C-eecH-------HHH--------------HHHHHHHHHHHHHHHHHHHHH
Confidence 69999999999999775422210 0 0011 112 245566666667777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCcHH
Q 017694 199 RLEGTEKKQQQMMSFLARAMQNPAF 223 (367)
Q Consensus 199 RL~~~E~kQqqmm~FLak~~qnp~f 223 (367)
.-+..+...+++.....+++.-.+|
T Consensus 66 ~A~~Ne~l~~~~~~l~l~Ll~a~~~ 90 (223)
T PRK10963 66 QAIANEDLFYRLLPLQSRLAAADSL 90 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCH
Confidence 7777777777777777766666544
No 54
>PRK11637 AmiB activator; Provisional
Probab=46.27 E-value=1.2e+02 Score=31.15 Aligned_cols=22 Identities=5% Similarity=0.137 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 017694 183 RQQQQNTRAYLQAMELRLEGTE 204 (367)
Q Consensus 183 RQqqq~~~~~l~~Me~RL~~~E 204 (367)
+++...+..++..++.+|..++
T Consensus 95 ~~~i~~~~~ei~~l~~eI~~~q 116 (428)
T PRK11637 95 QNTLNQLNKQIDELNASIAKLE 116 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334444444443333
No 55
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=46.22 E-value=1.2e+02 Score=28.72 Aligned_cols=24 Identities=25% Similarity=0.115 Sum_probs=19.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHH
Q 017694 161 LDGEFERLIRDKQFLMMELVKLRQ 184 (367)
Q Consensus 161 l~~Ei~~LKrd~~~L~~El~~LRQ 184 (367)
.-.||..||..|+-|..|...||.
T Consensus 53 hl~EIR~LKe~NqkLqedNqELRd 76 (195)
T PF10226_consen 53 HLNEIRGLKEVNQKLQEDNQELRD 76 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346788888888888888888875
No 56
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=45.17 E-value=67 Score=31.65 Aligned_cols=24 Identities=29% Similarity=0.274 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 017694 164 EFERLIRDKQFLMMELVKLRQQQQ 187 (367)
Q Consensus 164 Ei~~LKrd~~~L~~El~~LRQqqq 187 (367)
.+.+|+.+|+.|..|+..++++++
T Consensus 67 ~~~~l~~EN~~Lr~e~~~l~~~~~ 90 (283)
T TIGR00219 67 DVNNLEYENYKLRQELLKKNQQLE 90 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566666666666666654443
No 57
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=44.88 E-value=1.4e+02 Score=29.73 Aligned_cols=19 Identities=37% Similarity=0.333 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 017694 166 ERLIRDKQFLMMELVKLRQ 184 (367)
Q Consensus 166 ~~LKrd~~~L~~El~~LRQ 184 (367)
..|+..++.|..|+..|++
T Consensus 180 ~~l~~~~~~L~~e~~~Lk~ 198 (325)
T PF08317_consen 180 PKLRERKAELEEELENLKQ 198 (325)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444433
No 58
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=44.84 E-value=1.9e+02 Score=25.99 Aligned_cols=37 Identities=24% Similarity=0.274 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017694 164 EFERLIRDKQFLMMELVKLRQQQQNTRAYLQAMELRL 200 (367)
Q Consensus 164 Ei~~LKrd~~~L~~El~~LRQqqq~~~~~l~~Me~RL 200 (367)
++..|+.+...+..++..|..+..++...-..+..-+
T Consensus 53 eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~l 89 (140)
T PF10473_consen 53 EIETLEEELEELTSELNQLELELDTLRSEKENLDKEL 89 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444443333
No 59
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=44.68 E-value=2.1e+02 Score=31.27 Aligned_cols=67 Identities=19% Similarity=0.255 Sum_probs=43.0
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHh--hCcHHHHH
Q 017694 160 GLDGEFERLIRDKQFLMMELVKLRQQQ-------QNTRAYLQAMELRLEGTEK----KQQQMMSFLARAM--QNPAFLQQ 226 (367)
Q Consensus 160 ~l~~Ei~~LKrd~~~L~~El~~LRQqq-------q~~~~~l~~Me~RL~~~E~----kQqqmm~FLak~~--qnp~fl~q 226 (367)
.+++++..||+++.-|+.+|..+|.+. ....++++.+.++|..+.. ...+...+..+-. .++.|+..
T Consensus 166 ~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~~~h~~eI~e~~~~~~rd~t~~~r~~F~~ 245 (546)
T KOG0977|consen 166 ALEDELKRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEELAFLKRIHKQEIEEERRKARRDTTADNREYFKN 245 (546)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHhhcccccchHHHHH
Confidence 367778888888888888888887643 2355667777788877663 3333444455544 45555543
No 60
>PRK10884 SH3 domain-containing protein; Provisional
Probab=44.44 E-value=71 Score=30.27 Aligned_cols=25 Identities=16% Similarity=0.120 Sum_probs=15.1
Q ss_pred ccccccC--CCCceeecCCcccccccc
Q 017694 106 YGFRKID--PDRWEFSNEGFLRGERHL 130 (367)
Q Consensus 106 YGFrKv~--~d~~eF~h~~F~Rg~~~L 130 (367)
.||.+|. .++--|.|..|....|..
T Consensus 65 ~~w~~Vr~~~G~~GWV~~~~Ls~~p~~ 91 (206)
T PRK10884 65 TNYAQIRDSKGRTAWIPLKQLSTTPSL 91 (206)
T ss_pred CCEEEEEeCCCCEEeEEHHHhcCCccH
Confidence 3567763 344456677776666654
No 61
>PRK09039 hypothetical protein; Validated
Probab=44.19 E-value=1.2e+02 Score=30.61 Aligned_cols=58 Identities=22% Similarity=0.180 Sum_probs=43.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017694 161 LDGEFERLIRDKQFLMMELVKLRQQQQNTRAYLQAMELRLEGTEKKQQQMMSFLARAM 218 (367)
Q Consensus 161 l~~Ei~~LKrd~~~L~~El~~LRQqqq~~~~~l~~Me~RL~~~E~kQqqmm~FLak~~ 218 (367)
...++.....+...|..||..||.|...++..|.+.+++.+..+.+...+-.-|..++
T Consensus 128 ~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~ 185 (343)
T PRK09039 128 EKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVAL 185 (343)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666777788888888888888888888888888888777766666655555554
No 62
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=44.15 E-value=2.2e+02 Score=24.90 Aligned_cols=31 Identities=23% Similarity=0.309 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017694 164 EFERLIRDKQFLMMELVKLRQQQQNTRAYLQ 194 (367)
Q Consensus 164 Ei~~LKrd~~~L~~El~~LRQqqq~~~~~l~ 194 (367)
.+.++..|+..|...+.+|+.+....+.++.
T Consensus 60 ~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~ 90 (151)
T PF11559_consen 60 KLRRLRSDIERLQNDVERLKEQLEELERELA 90 (151)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444333333333333
No 63
>PRK14127 cell division protein GpsB; Provisional
Probab=43.74 E-value=71 Score=27.54 Aligned_cols=39 Identities=15% Similarity=0.304 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017694 165 FERLIRDKQFLMMELVKLRQQQQNTRAYLQAMELRLEGT 203 (367)
Q Consensus 165 i~~LKrd~~~L~~El~~LRQqqq~~~~~l~~Me~RL~~~ 203 (367)
++.+-.|.+.|..|+..|+.+...++.++..++.++...
T Consensus 32 Ld~V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~~~ 70 (109)
T PRK14127 32 LDDVIKDYEAFQKEIEELQQENARLKAQVDELTKQVSVG 70 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 567777888888899888888888888887777776644
No 64
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=43.50 E-value=1.6e+02 Score=29.56 Aligned_cols=40 Identities=18% Similarity=0.251 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017694 165 FERLIRDKQFLMMELVKLRQQQQNTRAYLQAMELRLEGTE 204 (367)
Q Consensus 165 i~~LKrd~~~L~~El~~LRQqqq~~~~~l~~Me~RL~~~E 204 (367)
++++|.+...+..|+...+++....+.+++.++.++....
T Consensus 206 L~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~ 245 (312)
T smart00787 206 LDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLT 245 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333334444444444444444444444444333
No 65
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=43.35 E-value=72 Score=25.35 Aligned_cols=37 Identities=19% Similarity=0.259 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017694 173 QFLMMELVKLRQQQQNTRAYLQAMELRLEGTEKKQQQ 209 (367)
Q Consensus 173 ~~L~~El~~LRQqqq~~~~~l~~Me~RL~~~E~kQqq 209 (367)
..|+.|-.+|..+.....+.+..+...+...|.....
T Consensus 15 a~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~ 51 (74)
T PF12329_consen 15 AQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKE 51 (74)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555444444444444444444444443333
No 66
>PRK11637 AmiB activator; Provisional
Probab=43.14 E-value=1.5e+02 Score=30.59 Aligned_cols=56 Identities=14% Similarity=0.110 Sum_probs=30.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017694 161 LDGEFERLIRDKQFLMMELVKLRQQQQNTRAYLQAMELRLEGTEKKQQQMMSFLAR 216 (367)
Q Consensus 161 l~~Ei~~LKrd~~~L~~El~~LRQqqq~~~~~l~~Me~RL~~~E~kQqqmm~FLak 216 (367)
++.+|..+.+....+..++..+.++...+..++...+.+|...+..-.+++..+.+
T Consensus 80 l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rlra~Y~ 135 (428)
T PRK11637 80 QEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQLDAAFR 135 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555556666666666666666666666555555554444444444333
No 67
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=42.93 E-value=3.2e+02 Score=26.45 Aligned_cols=46 Identities=28% Similarity=0.368 Sum_probs=30.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017694 161 LDGEFERLIRDKQFLMMELVKLRQQQQNTRAYLQAMELRLEGTEKK 206 (367)
Q Consensus 161 l~~Ei~~LKrd~~~L~~El~~LRQqqq~~~~~l~~Me~RL~~~E~k 206 (367)
...++..+++..+.|..|+..|+.+...+..++..++.++...-..
T Consensus 214 ~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~ 259 (312)
T PF00038_consen 214 AKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEEREE 259 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHH
Confidence 4566677777777777777777777777777776666666553333
No 68
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=42.53 E-value=1.6e+02 Score=22.71 Aligned_cols=32 Identities=28% Similarity=0.289 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017694 164 EFERLIRDKQFLMMELVKLRQQQQNTRAYLQA 195 (367)
Q Consensus 164 Ei~~LKrd~~~L~~El~~LRQqqq~~~~~l~~ 195 (367)
.|++|..|-+.|...|..|.+....++..+++
T Consensus 4 kid~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ 35 (56)
T PF04728_consen 4 KIDQLSSDVQTLNSKVDQLSSDVNALRADVQA 35 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555454544444444444444444433
No 69
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=41.77 E-value=2.8e+02 Score=30.76 Aligned_cols=43 Identities=21% Similarity=0.296 Sum_probs=35.0
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017694 160 GLDGEFERLIRDKQFLMMELVKLRQQQQNTRAYLQAMELRLEG 202 (367)
Q Consensus 160 ~l~~Ei~~LKrd~~~L~~El~~LRQqqq~~~~~l~~Me~RL~~ 202 (367)
.++..+++|+.++..|..++..++.+...++.++..+..+++.
T Consensus 426 ~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~ 468 (652)
T COG2433 426 KLEETVERLEEENSELKRELEELKREIEKLESELERFRREVRD 468 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667788888888888888888888888888888887777764
No 70
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=40.91 E-value=72 Score=27.26 Aligned_cols=30 Identities=30% Similarity=0.343 Sum_probs=14.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017694 162 DGEFERLIRDKQFLMMELVKLRQQQQNTRA 191 (367)
Q Consensus 162 ~~Ei~~LKrd~~~L~~El~~LRQqqq~~~~ 191 (367)
-.+|..||.....|..|.++||-+.+.++.
T Consensus 21 ~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~ 50 (107)
T PF06156_consen 21 LEELEELKKQLQELLEENARLRIENEHLRE 50 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555544444443333
No 71
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=40.67 E-value=2.2e+02 Score=31.64 Aligned_cols=116 Identities=20% Similarity=0.278 Sum_probs=64.8
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHH-HHHHH
Q 017694 160 GLDGEFERLIRDKQFLMMELVKLRQQQQNTRAYLQAMELRLEGTEKKQQQMMSFLARAMQNPAFLQQLVQQKEK-RKELE 238 (367)
Q Consensus 160 ~l~~Ei~~LKrd~~~L~~El~~LRQqqq~~~~~l~~Me~RL~~~E~kQqqmm~FLak~~qnp~fl~qLv~q~~~-~k~l~ 238 (367)
.+..+|++|+.+...|-.+|..+..+....+..++.|-+.++.+.+||-=+-+|=.++...-..+....++-.. -..+.
T Consensus 83 ~L~~everLraei~~l~~~I~~~e~e~~~~e~~~~q~~~~~~~~~~k~~LL~Ay~q~c~~~~~~l~e~~~rl~~~~~~~q 162 (632)
T PF14817_consen 83 ELEKEVERLRAEIQELDKEIESREREVSRQEASREQMLDKISDSRHKQLLLEAYSQQCEEQRRILREYTKRLQGQVEQLQ 162 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36677777777777777777777777766777777788888888888766656655554443333333322211 12233
Q ss_pred HHhcccccCCCCCCCCCCCCCCCCCCCCCCCccccCCccccCC
Q 017694 239 EAMTKKRRRPIDQGPIGAGVAGSSDFGEGMSSVKAEPLEYGDY 281 (367)
Q Consensus 239 ~~~~kKRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (367)
+ +.+|-...+.-+|... .+++...+..-+||....+|
T Consensus 163 ~-~~R~a~~~v~~~~~~s-----a~~~~~~~~~~lE~~v~rdV 199 (632)
T PF14817_consen 163 D-IQRKAKVEVEFGPSTS-----ASSGSSDSSLGLEPAVLRDV 199 (632)
T ss_pred H-HHhhccCceeecCCcc-----chhhhhhhhcccchHHHHHH
Confidence 3 3333333344444431 11222445666677665554
No 72
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=40.04 E-value=81 Score=26.68 Aligned_cols=16 Identities=6% Similarity=0.106 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 017694 181 KLRQQQQNTRAYLQAM 196 (367)
Q Consensus 181 ~LRQqqq~~~~~l~~M 196 (367)
.++++....+.+++.+
T Consensus 31 ~l~~q~~~~~~e~~~l 46 (105)
T PRK00888 31 RVNDQVAAQQQTNAKL 46 (105)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 73
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=39.85 E-value=15 Score=33.79 Aligned_cols=37 Identities=22% Similarity=0.392 Sum_probs=8.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017694 161 LDGEFERLIRDKQFLMMELVKLRQQQQNTRAYLQAMELRLEG 202 (367)
Q Consensus 161 l~~Ei~~LKrd~~~L~~El~~LRQqqq~~~~~l~~Me~RL~~ 202 (367)
|+.|| .+++.|..|+++||.+..+++.++ .+.++++.
T Consensus 19 LE~EL----dEKE~L~~~~QRLkDE~RDLKqEl-~V~ek~~~ 55 (166)
T PF04880_consen 19 LESEL----DEKENLREEVQRLKDELRDLKQEL-IVQEKLRK 55 (166)
T ss_dssp HHHHH----HHHHHHHHCH-----------------------
T ss_pred HHHHH----HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhh
Confidence 45555 245666666666666666666666 55555543
No 74
>PF11414 Suppressor_APC: Adenomatous polyposis coli tumour suppressor protein; PDB: 1M5I_A.
Probab=39.67 E-value=1.1e+02 Score=25.16 Aligned_cols=43 Identities=16% Similarity=0.194 Sum_probs=29.9
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017694 160 GLDGEFERLIRDKQFLMMELVKLRQQQQNTRAYLQAMELRLEG 202 (367)
Q Consensus 160 ~l~~Ei~~LKrd~~~L~~El~~LRQqqq~~~~~l~~Me~RL~~ 202 (367)
++...+..|-+++.+|+.++..+.+...=...+|+.+.+|.+.
T Consensus 4 ~~lk~mkeLEqEkd~LLqgLe~~Er~r~Wy~~qL~~vq~rq~~ 46 (84)
T PF11414_consen 4 NMLKRMKELEQEKDVLLQGLEMEERERDWYQQQLQSVQERQRH 46 (84)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788999999999999999877665445556555555443
No 75
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=39.21 E-value=2.3e+02 Score=27.49 Aligned_cols=50 Identities=18% Similarity=0.238 Sum_probs=22.1
Q ss_pred CchHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017694 160 GLDGEFERLIRDKQ-------FLMMELVKLRQQQQNTRAYLQAMELRLEGTEKKQQQ 209 (367)
Q Consensus 160 ~l~~Ei~~LKrd~~-------~L~~El~~LRQqqq~~~~~l~~Me~RL~~~E~kQqq 209 (367)
..+..+.+|.+..+ .|...|..|+++...++-+++.+...|+.+.++|..
T Consensus 37 ~~~~r~~~le~~~~~~~~~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~ 93 (263)
T PRK10803 37 SVEDRVTQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQ 93 (263)
T ss_pred chHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 34555555544332 233333444444444444444444444444444444
No 76
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=39.03 E-value=1e+02 Score=31.76 Aligned_cols=28 Identities=25% Similarity=0.371 Sum_probs=20.9
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 017694 158 RFGLDGEFERLIRDKQFLMMELVKLRQQ 185 (367)
Q Consensus 158 ~~~l~~Ei~~LKrd~~~L~~El~~LRQq 185 (367)
.++|..|-++||++++.|..||.+|..+
T Consensus 34 ~~aLr~EN~~LKkEN~~Lk~eVerLE~e 61 (420)
T PF07407_consen 34 NFALRMENHSLKKENNDLKIEVERLENE 61 (420)
T ss_pred hhhHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3467788888888888888888877433
No 77
>PF08227 DASH_Hsk3: DASH complex subunit Hsk3 like; InterPro: IPR013183 This is a family of fungal proteins of unknown function.
Probab=38.96 E-value=1.5e+02 Score=21.72 Aligned_cols=39 Identities=26% Similarity=0.234 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017694 171 DKQFLMMELVKLRQQQQNTRAYLQAMELRLEGTEKKQQQMMSFLARA 217 (367)
Q Consensus 171 d~~~L~~El~~LRQqqq~~~~~l~~Me~RL~~~E~kQqqmm~FLak~ 217 (367)
++..|-.++..|.....++ ++.|+.| ..|-.+|.||.++
T Consensus 3 q~s~L~~qL~qL~aNL~~t-------~~~l~~~-s~Q~~~i~~LG~~ 41 (45)
T PF08227_consen 3 QYSHLASQLAQLQANLADT-------ENLLEMT-SIQANSIRKLGKI 41 (45)
T ss_pred HHHHHHHHHHHHHHhHHHH-------HHHHHHH-HHHHHHHHHHHHH
Confidence 3344444555444444444 4444443 3556788888764
No 78
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=38.28 E-value=1.8e+02 Score=25.82 Aligned_cols=13 Identities=31% Similarity=0.378 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHH
Q 017694 168 LIRDKQFLMMELV 180 (367)
Q Consensus 168 LKrd~~~L~~El~ 180 (367)
|-+.+.+|-+.+.
T Consensus 25 ll~~~~~LE~qL~ 37 (160)
T PF13094_consen 25 LLDRKRALERQLA 37 (160)
T ss_pred HHHHHHHHHHHHH
Confidence 3333334444333
No 79
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=38.25 E-value=2.2e+02 Score=23.15 Aligned_cols=48 Identities=13% Similarity=0.192 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Q 017694 163 GEFERLIRDKQFLMMELVKLRQQQQNTRAY-------LQAMELRLEGTEKKQQQM 210 (367)
Q Consensus 163 ~Ei~~LKrd~~~L~~El~~LRQqqq~~~~~-------l~~Me~RL~~~E~kQqqm 210 (367)
+=++.+|.+...+.+|+...+.+....+.+ |+.+.+.+-.+|..+.+|
T Consensus 4 elLd~ir~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~km 58 (79)
T PF08581_consen 4 ELLDAIRQEFENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQKVYELEQAHRKM 58 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346788888888888888877765544443 334444444444444443
No 80
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=38.17 E-value=1e+02 Score=28.44 Aligned_cols=18 Identities=22% Similarity=0.368 Sum_probs=10.3
Q ss_pred ccccccccccccccccCC
Q 017694 123 FLRGERHLLKNIKRRKAP 140 (367)
Q Consensus 123 F~Rg~~~LL~~IkRk~~~ 140 (367)
|.......|..|++-+..
T Consensus 38 y~~~dl~~L~~I~~l~~~ 55 (175)
T PRK13182 38 FTEEDLQLLEYVKSQIEE 55 (175)
T ss_pred ECHHHHHHHHHHHHHHHc
Confidence 333445567777766554
No 81
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=38.04 E-value=2.5e+02 Score=30.18 Aligned_cols=42 Identities=17% Similarity=0.218 Sum_probs=30.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017694 161 LDGEFERLIRDKQFLMMELVKLRQQQQNTRAYLQAMELRLEG 202 (367)
Q Consensus 161 l~~Ei~~LKrd~~~L~~El~~LRQqqq~~~~~l~~Me~RL~~ 202 (367)
|-.++..++++.+.|..+..+|+.+.+.++.+...+..|++.
T Consensus 64 lva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~ 105 (472)
T TIGR03752 64 LVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQ 105 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 556777888888888888888877777666666666666554
No 82
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=37.71 E-value=1.6e+02 Score=30.36 Aligned_cols=51 Identities=12% Similarity=0.047 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Q 017694 163 GEFERLIRDKQFLMMELVKLRQQQQNTRAYLQA--MELRLEGTEKKQQQMMSF 213 (367)
Q Consensus 163 ~Ei~~LKrd~~~L~~El~~LRQqqq~~~~~l~~--Me~RL~~~E~kQqqmm~F 213 (367)
.|.-.|+.+|..|.+|...|+.+...+++++.. +.++..-++.+-..+...
T Consensus 32 ~e~~aLr~EN~~LKkEN~~Lk~eVerLE~e~l~s~V~E~vet~dv~~d~i~Ki 84 (420)
T PF07407_consen 32 DENFALRMENHSLKKENNDLKIEVERLENEMLRSHVCEDVETNDVIYDKIVKI 84 (420)
T ss_pred hhhhhHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHH
Confidence 566779999999999999999999888887764 666666665544444333
No 83
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=37.62 E-value=1.3e+02 Score=32.81 Aligned_cols=47 Identities=23% Similarity=0.363 Sum_probs=27.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017694 161 LDGEFERLIRDKQFLMMELVKLRQQQQNTRAYLQAMELRLEGTEKKQ 207 (367)
Q Consensus 161 l~~Ei~~LKrd~~~L~~El~~LRQqqq~~~~~l~~Me~RL~~~E~kQ 207 (367)
+..+++...+++..|..+...|+++...++.++..|+..|...+.+.
T Consensus 141 lQ~qlE~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~ 187 (546)
T PF07888_consen 141 LQNQLEECQKEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEM 187 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666666666666666665555555444433
No 84
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=37.29 E-value=2e+02 Score=24.19 Aligned_cols=46 Identities=20% Similarity=0.193 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017694 165 FERLIRDKQFLMMELVKL--RQQQQNTRAYLQAMELRLEGTEKKQQQM 210 (367)
Q Consensus 165 i~~LKrd~~~L~~El~~L--RQqqq~~~~~l~~Me~RL~~~E~kQqqm 210 (367)
++...+-.+.|-.++..| ++....++..|..|+.+++.++.+-+.|
T Consensus 44 ~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v 91 (106)
T PF10805_consen 44 LDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGV 91 (106)
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 333344555555556655 5555566666666666666666555444
No 85
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=36.69 E-value=1.8e+02 Score=26.93 Aligned_cols=11 Identities=18% Similarity=0.706 Sum_probs=5.0
Q ss_pred EEcCCCCeEEE
Q 017694 66 SWSRGGVSFVV 76 (367)
Q Consensus 66 sWs~~G~sFvI 76 (367)
.|..+|..++.
T Consensus 13 ~~~~~~~~~~q 23 (189)
T PF10211_consen 13 EWEEDGQLWIQ 23 (189)
T ss_pred hhhcCCeeeEe
Confidence 35544444443
No 86
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=36.11 E-value=1.1e+02 Score=23.21 Aligned_cols=10 Identities=10% Similarity=0.773 Sum_probs=5.7
Q ss_pred hCcHHHHHHH
Q 017694 219 QNPAFLQQLV 228 (367)
Q Consensus 219 qnp~fl~qLv 228 (367)
.+|.++..+.
T Consensus 52 ~~~~~ie~~A 61 (80)
T PF04977_consen 52 NDPDYIEKVA 61 (80)
T ss_pred CCHHHHHHHH
Confidence 4666665444
No 87
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=35.95 E-value=1.4e+02 Score=31.01 Aligned_cols=49 Identities=16% Similarity=0.272 Sum_probs=23.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Q 017694 161 LDGEFERLIRDKQFLMMELVKLRQQ---QQNTRAYLQAMELRLEGTEKKQQQ 209 (367)
Q Consensus 161 l~~Ei~~LKrd~~~L~~El~~LRQq---qq~~~~~l~~Me~RL~~~E~kQqq 209 (367)
+..+++.|+++++.+..++..+... .+.+..+...+.++++.+|.+...
T Consensus 40 l~~~~~~lr~~rn~~sk~i~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~ 91 (425)
T PRK05431 40 LQTELEELQAERNALSKEIGQAKRKGEDAEALIAEVKELKEEIKALEAELDE 91 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666666666543222 112333444444444444444433
No 88
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=35.78 E-value=1.2e+02 Score=27.22 Aligned_cols=69 Identities=22% Similarity=0.306 Sum_probs=42.1
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHH
Q 017694 160 GLDGEFERLIRDKQFLMMELVKLRQQQ--QNTRAYLQAMELRLEGTEKKQQQMMSFLARAMQNPAFLQQLVQQ 230 (367)
Q Consensus 160 ~l~~Ei~~LKrd~~~L~~El~~LRQqq--q~~~~~l~~Me~RL~~~E~kQqqmm~FLak~~qnp~fl~qLv~q 230 (367)
.+..++..|+.+...|..|+..|+... ..+...+..++..+..++.+...+-+ ....-+|.-+..+...
T Consensus 83 ~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~--~~~~vs~ee~~~~~~~ 153 (169)
T PF07106_consen 83 ELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRS--GSKPVSPEEKEKLEKE 153 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCCCHHHHHHHHHH
Confidence 477888888888888888888877643 33455555566666666655555544 2222334444444443
No 89
>COG3159 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.61 E-value=1.3e+02 Score=29.12 Aligned_cols=78 Identities=12% Similarity=0.170 Sum_probs=53.2
Q ss_pred ceeecCCccccccccccccccccCCCCCCCCCCCCCCccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017694 116 WEFSNEGFLRGERHLLKNIKRRKAPSQPLPPPQALGPCVELGRFGLDGEFERLIRDKQFLMMELVKLRQQQQNTRAYLQA 195 (367)
Q Consensus 116 ~eF~h~~F~Rg~~~LL~~IkRk~~~s~~~~~qq~~~~~~Ev~~~~l~~Ei~~LKrd~~~L~~El~~LRQqqq~~~~~l~~ 195 (367)
|-..||.|-+-+++|+..|.=..+...+ .+. .+ ..+.++|+.+..++.++.+
T Consensus 12 yL~~hPeFf~~h~~Ll~~L~lph~~~~t-------VSL-------ve--------------~ql~r~R~~~~~Le~~l~~ 63 (218)
T COG3159 12 YLRQHPEFFIQHAELLEELRLPHPVAGT-------VSL-------VE--------------RQLARLRNRIRELEEELAA 63 (218)
T ss_pred HHHhCcHHHHhCHHHHHHcCCCCCCCCe-------eeh-------HH--------------HHHHHHHHHHHHHHHHHHH
Confidence 3457999999999999998765433110 011 11 2355667777777778888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCc
Q 017694 196 MELRLEGTEKKQQQMMSFLARAMQNP 221 (367)
Q Consensus 196 Me~RL~~~E~kQqqmm~FLak~~qnp 221 (367)
+.+.-+..+.-+.+++..-.++++-.
T Consensus 64 L~~~A~~N~~lf~r~~~lq~~Ll~a~ 89 (218)
T COG3159 64 LMENARANERLFYRLHALQLDLLDAR 89 (218)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence 88888888888888877777666543
No 90
>PF05524 PEP-utilisers_N: PEP-utilising enzyme, N-terminal; InterPro: IPR008731 This sequence identifies proteins which are a component of the phosphoenolpyruvate:sugar phosphotransferase system (PTS), a major carbohydrate active transport system. The PTS system is found throughout the bacterial kingdom, and is responsible for the coupled phosphorylation and translocation of numerous sugars across the cytoplasmic membrane []. This entry represents the N-terminal domain of enzyme I (EIN) which transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr) which in turn phosphorylates a group of membrane-associated proteins, known as enzyme II. The N-terminal domain of EI (EIN) extends from residues 1 to 259 and can be phosphorylated in a fully reversible manner by phosphorylated HPr. EIN, however, cannot be autophosphorylated by PEP [, ].; GO: 0005351 sugar:hydrogen symporter activity, 0008965 phosphoenolpyruvate-protein phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0005737 cytoplasm; PDB: 2WQD_A 2XDF_B 2HWG_A 3EZB_A 2L5H_A 3EZA_A 1EZB_A 2EZA_A 1EZA_A 1EZC_A ....
Probab=35.49 E-value=1.3e+02 Score=25.34 Aligned_cols=55 Identities=15% Similarity=0.293 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhCcHHHHHHHHHHH
Q 017694 178 ELVKLRQQQQNTRAYLQAMELRLEGTE-KKQQQMMSFLARAMQNPAFLQQLVQQKE 232 (367)
Q Consensus 178 El~~LRQqqq~~~~~l~~Me~RL~~~E-~kQqqmm~FLak~~qnp~fl~qLv~q~~ 232 (367)
|+.++++-...+..+|+.+.++++..- .....|+..-..++.+|.|+..+...-.
T Consensus 36 E~~rl~~Al~~~~~eL~~l~~~~~~~~~~~~a~If~ah~~~L~D~~l~~~v~~~I~ 91 (123)
T PF05524_consen 36 EIERLEQALEKAREELEQLAERAESKLGEEEAAIFEAHLMMLEDPELIDEVEELIR 91 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCHSSCTHHHHHHHHHHT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhcCHhHHHHHHHHHh
Confidence 333344444444444444444433321 2233688888999999999887766544
No 91
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=34.99 E-value=4.8e+02 Score=28.57 Aligned_cols=32 Identities=28% Similarity=0.391 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017694 163 GEFERLIRDKQFLMMELVKLRQQQQNTRAYLQ 194 (367)
Q Consensus 163 ~Ei~~LKrd~~~L~~El~~LRQqqq~~~~~l~ 194 (367)
.+.+.|.+.+..|..|+..|+.+...++..|.
T Consensus 150 kE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~ 181 (546)
T PF07888_consen 150 KEKEELLKENEQLEEEVEQLREEVERLEAELE 181 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444433333333
No 92
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=34.31 E-value=1e+02 Score=26.56 Aligned_cols=33 Identities=27% Similarity=0.246 Sum_probs=16.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017694 161 LDGEFERLIRDKQFLMMELVKLRQQQQNTRAYL 193 (367)
Q Consensus 161 l~~Ei~~LKrd~~~L~~El~~LRQqqq~~~~~l 193 (367)
+-.++..||.+...|..|.+.|+-+.+.++.+|
T Consensus 20 l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l 52 (110)
T PRK13169 20 LLKELGALKKQLAELLEENTALRLENDKLRERL 52 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555555555555544444433
No 93
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=33.93 E-value=3.5e+02 Score=24.29 Aligned_cols=59 Identities=25% Similarity=0.330 Sum_probs=44.5
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017694 160 GLDGEFERLIRDKQFLMMELVKLRQQQQNTRAYLQAMELRLEGTEKKQQQMMSFLARAM 218 (367)
Q Consensus 160 ~l~~Ei~~LKrd~~~L~~El~~LRQqqq~~~~~l~~Me~RL~~~E~kQqqmm~FLak~~ 218 (367)
.+..+++.+.+....+..++..++...+.....++..+++++..+.....+..-+..+.
T Consensus 92 ~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 92 QLQEELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778888888888888888888887777777777777777777777777666655544
No 94
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=33.88 E-value=1.5e+02 Score=25.99 Aligned_cols=41 Identities=15% Similarity=0.308 Sum_probs=28.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017694 161 LDGEFERLIRDKQFLMMELVKLRQQQQNTRAYLQAMELRLE 201 (367)
Q Consensus 161 l~~Ei~~LKrd~~~L~~El~~LRQqqq~~~~~l~~Me~RL~ 201 (367)
.+.=++.|+...+.|-..|.+|+.+...++.++..|...|+
T Consensus 68 k~~~~~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~ 108 (119)
T COG1382 68 KEEAVDELEERKETLELRIKTLEKQEEKLQERLEELQSEIQ 108 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34446777888888888888888777776666666655444
No 95
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=33.58 E-value=1.4e+02 Score=23.19 Aligned_cols=27 Identities=19% Similarity=0.187 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017694 175 LMMELVKLRQQQQNTRAYLQAMELRLE 201 (367)
Q Consensus 175 L~~El~~LRQqqq~~~~~l~~Me~RL~ 201 (367)
|-..|....++...++.++..|.+||+
T Consensus 23 Ln~~v~~Qq~~I~~L~~~l~~L~~rl~ 49 (69)
T PF04102_consen 23 LNDVVTEQQRQIDRLQRQLRLLRERLR 49 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333444444433
No 96
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=33.49 E-value=40 Score=36.10 Aligned_cols=38 Identities=24% Similarity=0.357 Sum_probs=22.6
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017694 160 GLDGEFERLIRDKQFLMMELVKLRQQQQNTRAYLQAMELRLEGTEK 205 (367)
Q Consensus 160 ~l~~Ei~~LKrd~~~L~~El~~LRQqqq~~~~~l~~Me~RL~~~E~ 205 (367)
.+..+++.++ +.+.|.+||..|++|+. .|.+|+..+|+
T Consensus 22 a~~~~~~~~q-kie~L~kql~~Lk~q~~-------~l~~~v~k~e~ 59 (489)
T PF11853_consen 22 AMADDIDLLQ-KIEALKKQLEELKAQQD-------DLNDRVDKVEK 59 (489)
T ss_pred hhhhhhHHHH-HHHHHHHHHHHHHHhhc-------ccccccchhhH
Confidence 3556666665 66666666666666654 55555555544
No 97
>PRK00846 hypothetical protein; Provisional
Probab=33.34 E-value=1.9e+02 Score=23.46 Aligned_cols=9 Identities=11% Similarity=-0.260 Sum_probs=3.5
Q ss_pred HHHHHHHHH
Q 017694 207 QQQMMSFLA 215 (367)
Q Consensus 207 Qqqmm~FLa 215 (367)
|++.+.-|.
T Consensus 39 qq~~I~~L~ 47 (77)
T PRK00846 39 ARLTGARNA 47 (77)
T ss_pred HHHHHHHHH
Confidence 333333333
No 98
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=33.25 E-value=2.3e+02 Score=30.44 Aligned_cols=39 Identities=8% Similarity=0.078 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017694 172 KQFLMMELVKLRQQQQNTRAYLQAMELRLEGTEKKQQQM 210 (367)
Q Consensus 172 ~~~L~~El~~LRQqqq~~~~~l~~Me~RL~~~E~kQqqm 210 (367)
...|.++|..||++.+.+..+.+.++++|+.+|...++|
T Consensus 78 asELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~L 116 (475)
T PRK13729 78 AAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAAL 116 (475)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence 345666677777666666666667777777666655554
No 99
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=33.06 E-value=2.1e+02 Score=29.82 Aligned_cols=21 Identities=29% Similarity=0.257 Sum_probs=11.5
Q ss_pred chHHHHHHHHHHHHHHHHHHH
Q 017694 161 LDGEFERLIRDKQFLMMELVK 181 (367)
Q Consensus 161 l~~Ei~~LKrd~~~L~~El~~ 181 (367)
+..+++.|+.+++.+..++..
T Consensus 42 ~~~~~~~l~~erN~~sk~i~~ 62 (418)
T TIGR00414 42 LLSEIEELQAKRNELSKQIGK 62 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555544
No 100
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=33.03 E-value=2.5e+02 Score=29.74 Aligned_cols=11 Identities=18% Similarity=0.401 Sum_probs=4.2
Q ss_pred HHHHHHHHHHH
Q 017694 192 YLQAMELRLEG 202 (367)
Q Consensus 192 ~l~~Me~RL~~ 202 (367)
.+..++.+|..
T Consensus 95 ~I~~~~~~l~~ 105 (420)
T COG4942 95 QIADLNARLNA 105 (420)
T ss_pred hHHHHHHHHHH
Confidence 33333333333
No 101
>KOG3863 consensus bZIP transcription factor NRF1 [Transcription]
Probab=31.90 E-value=59 Score=35.67 Aligned_cols=61 Identities=23% Similarity=0.369 Sum_probs=36.8
Q ss_pred cCCccccccccccccccccCCCCCCCCCCCCCCccc--cCC-CCchHHHHHHHHHHHHHHHHHHHHHHHH
Q 017694 120 NEGFLRGERHLLKNIKRRKAPSQPLPPPQALGPCVE--LGR-FGLDGEFERLIRDKQFLMMELVKLRQQQ 186 (367)
Q Consensus 120 h~~F~Rg~~~LL~~IkRk~~~s~~~~~qq~~~~~~E--v~~-~~l~~Ei~~LKrd~~~L~~El~~LRQqq 186 (367)
.-.|..-+..|+..|+||...+.+. + .|.. ... ..|+.+++.|+++++.|..|-..+....
T Consensus 478 ~~~lte~QLslIrDIRRRgKNkvAA-Q-----nCRKRKLd~I~nLE~ev~~l~~eKeqLl~Er~~~d~~L 541 (604)
T KOG3863|consen 478 KYKLTEEQLSLIRDIRRRGKNKVAA-Q-----NCRKRKLDCILNLEDEVEKLQKEKEQLLRERDELDSTL 541 (604)
T ss_pred hcccCHHHHHHhhccccccccchhc-c-----chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667888999999986654322 1 1110 000 1477888888888877776655544433
No 102
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=31.65 E-value=1.8e+02 Score=28.30 Aligned_cols=39 Identities=18% Similarity=0.057 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017694 167 RLIRDKQFLMMELVKLRQQQQNTRAYLQAMELRLEGTEK 205 (367)
Q Consensus 167 ~LKrd~~~L~~El~~LRQqqq~~~~~l~~Me~RL~~~E~ 205 (367)
.|....+.|..||.+||-+.+....+|+.|.+|-+..-.
T Consensus 58 ~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~ 96 (263)
T PRK10803 58 QLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYL 96 (263)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 455566667777777777777777777777777665443
No 103
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=31.41 E-value=2e+02 Score=30.72 Aligned_cols=47 Identities=19% Similarity=0.253 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017694 164 EFERLIRDKQFLMMELVKLRQQQQNTRAYLQAMELRLEGTEKKQQQM 210 (367)
Q Consensus 164 Ei~~LKrd~~~L~~El~~LRQqqq~~~~~l~~Me~RL~~~E~kQqqm 210 (367)
+++..|.....+.+|+..+++.+.++++.-+.+|.+++....|+...
T Consensus 348 qlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~ 394 (493)
T KOG0804|consen 348 QLENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKC 394 (493)
T ss_pred HHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66667777777888888888888888888888888877766666554
No 104
>PLN02320 seryl-tRNA synthetase
Probab=31.28 E-value=1.9e+02 Score=31.20 Aligned_cols=18 Identities=22% Similarity=0.409 Sum_probs=10.2
Q ss_pred CCcccccccc-cccccccc
Q 017694 121 EGFLRGERHL-LKNIKRRK 138 (367)
Q Consensus 121 ~~F~Rg~~~L-L~~IkRk~ 138 (367)
-.|.|.+++. ..+|++|.
T Consensus 69 ~k~ir~n~~~v~~~l~~R~ 87 (502)
T PLN02320 69 FKWIRDNKEAVAINIRNRN 87 (502)
T ss_pred HHHHHhCHHHHHHHHHhcC
Confidence 4566666664 45566654
No 105
>PRK04406 hypothetical protein; Provisional
Probab=31.04 E-value=2.1e+02 Score=22.94 Aligned_cols=12 Identities=17% Similarity=0.313 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHH
Q 017694 205 KKQQQMMSFLAR 216 (367)
Q Consensus 205 ~kQqqmm~FLak 216 (367)
-+||+-+.-|.+
T Consensus 35 ~~Qq~~I~~L~~ 46 (75)
T PRK04406 35 SQQQLLITKMQD 46 (75)
T ss_pred HHHHHHHHHHHH
Confidence 344444444443
No 106
>PRK04325 hypothetical protein; Provisional
Probab=30.39 E-value=2.2e+02 Score=22.60 Aligned_cols=11 Identities=36% Similarity=0.573 Sum_probs=4.5
Q ss_pred HHHHHHHHHHH
Q 017694 205 KKQQQMMSFLA 215 (367)
Q Consensus 205 ~kQqqmm~FLa 215 (367)
-+|++.+.-|.
T Consensus 33 ~~Qq~~I~~L~ 43 (74)
T PRK04325 33 ARQQQTLDLLQ 43 (74)
T ss_pred HHHHHHHHHHH
Confidence 34444444443
No 107
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=30.35 E-value=1.6e+02 Score=27.16 Aligned_cols=39 Identities=21% Similarity=0.172 Sum_probs=26.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017694 162 DGEFERLIRDKQFLMMELVKLRQQQQNTRAYLQAMELRL 200 (367)
Q Consensus 162 ~~Ei~~LKrd~~~L~~El~~LRQqqq~~~~~l~~Me~RL 200 (367)
+.|-+.|+.+..-+-.||..|||-...-+.+...+.++|
T Consensus 28 EeE~eeLr~EL~KvEeEI~TLrqvL~aKer~~~eLKrkL 66 (162)
T PF04201_consen 28 EEEREELRSELAKVEEEIQTLRQVLAAKERHCAELKRKL 66 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 456677888877788888888877665555555555554
No 108
>PLN02678 seryl-tRNA synthetase
Probab=30.14 E-value=2.1e+02 Score=30.36 Aligned_cols=21 Identities=24% Similarity=0.189 Sum_probs=10.4
Q ss_pred chHHHHHHHHHHHHHHHHHHH
Q 017694 161 LDGEFERLIRDKQFLMMELVK 181 (367)
Q Consensus 161 l~~Ei~~LKrd~~~L~~El~~ 181 (367)
+..+++.|+.+++.+..++..
T Consensus 45 l~~~~e~lr~erN~~sk~I~~ 65 (448)
T PLN02678 45 RQFELDSLRKEFNKLNKEVAK 65 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555543
No 109
>PHA01750 hypothetical protein
Probab=29.95 E-value=1.8e+02 Score=23.31 Aligned_cols=31 Identities=13% Similarity=0.213 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017694 173 QFLMMELVKLRQQQQNTRAYLQAMELRLEGT 203 (367)
Q Consensus 173 ~~L~~El~~LRQqqq~~~~~l~~Me~RL~~~ 203 (367)
+...+|+..|+.+.+++..+..++++++...
T Consensus 38 eIV~~ELdNL~~ei~~~kikqDnl~~qv~ei 68 (75)
T PHA01750 38 EIVNSELDNLKTEIEELKIKQDELSRQVEEI 68 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 4555666777777666665555555544443
No 110
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=29.68 E-value=2.6e+02 Score=24.80 Aligned_cols=22 Identities=36% Similarity=0.358 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 017694 163 GEFERLIRDKQFLMMELVKLRQ 184 (367)
Q Consensus 163 ~Ei~~LKrd~~~L~~El~~LRQ 184 (367)
.+|..|.+.+..|-.+|.++..
T Consensus 35 ~EI~sL~~K~~~lE~eld~~~~ 56 (143)
T PF12718_consen 35 QEITSLQKKNQQLEEELDKLEE 56 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444333
No 111
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=29.58 E-value=2.8e+02 Score=25.14 Aligned_cols=14 Identities=36% Similarity=0.712 Sum_probs=10.7
Q ss_pred hHHhhhcccccccc
Q 017694 98 SFVRQLNTYGFRKI 111 (367)
Q Consensus 98 SFvRQLN~YGFrKv 111 (367)
.||++|..-||..-
T Consensus 6 ~~v~~Le~~Gft~~ 19 (177)
T PF07798_consen 6 KFVKRLEAAGFTEE 19 (177)
T ss_pred HHHHHHHHCCCCHH
Confidence 58888888888754
No 112
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=29.14 E-value=5.2e+02 Score=28.59 Aligned_cols=72 Identities=21% Similarity=0.247 Sum_probs=33.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHH
Q 017694 161 LDGEFERLIRDKQFLMMELVKLRQQQ-------QNTRAYLQAMELRLEGTEKKQQQMMSFLARAMQNPAFLQQLVQQKE 232 (367)
Q Consensus 161 l~~Ei~~LKrd~~~L~~El~~LRQqq-------q~~~~~l~~Me~RL~~~E~kQqqmm~FLak~~qnp~fl~qLv~q~~ 232 (367)
+..++..|+++...|..++...-... +....+|..++.+++..+.........|+.+-.+-.-+.+.|.|+.
T Consensus 85 Lq~E~~~L~kElE~L~~qlqaqv~~ne~Ls~L~~EqEerL~ELE~~le~~~e~~~D~~kLLe~lqsdk~t~SRAlsQN~ 163 (617)
T PF15070_consen 85 LQAEAEHLRKELESLEEQLQAQVENNEQLSRLNQEQEERLAELEEELERLQEQQEDRQKLLEQLQSDKATASRALSQNR 163 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHhHH
Confidence 55566666666666655544332222 2233445555555555444433333334433333334455555543
No 113
>PRK02119 hypothetical protein; Provisional
Probab=29.11 E-value=2.4e+02 Score=22.39 Aligned_cols=12 Identities=17% Similarity=0.108 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHH
Q 017694 205 KKQQQMMSFLAR 216 (367)
Q Consensus 205 ~kQqqmm~FLak 216 (367)
-+|++.+.-|.+
T Consensus 33 ~~Qq~~id~L~~ 44 (73)
T PRK02119 33 IEQQFVIDKMQV 44 (73)
T ss_pred HHHHHHHHHHHH
Confidence 344444444443
No 114
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=28.70 E-value=2.1e+02 Score=26.39 Aligned_cols=34 Identities=21% Similarity=0.234 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017694 174 FLMMELVKLRQQQQNTRAYLQAMELRLEGTEKKQ 207 (367)
Q Consensus 174 ~L~~El~~LRQqqq~~~~~l~~Me~RL~~~E~kQ 207 (367)
.|..|...|+.+...+..++..++..+..++.++
T Consensus 101 ~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~ 134 (161)
T TIGR02894 101 ALQKENERLKNQNESLQKRNEELEKELEKLRQRL 134 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555544444443
No 115
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=28.70 E-value=5.6e+02 Score=25.02 Aligned_cols=51 Identities=22% Similarity=0.205 Sum_probs=37.3
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017694 160 GLDGEFERLIRDKQFLMMELVKLRQQQQNTRAYLQAMELRLEGTEKKQQQM 210 (367)
Q Consensus 160 ~l~~Ei~~LKrd~~~L~~El~~LRQqqq~~~~~l~~Me~RL~~~E~kQqqm 210 (367)
.|..+++.+++....|..|++.+...+..+..++..+.+++..+|..-..+
T Consensus 93 aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~ 143 (239)
T COG1579 93 ALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEA 143 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477778888888888888888887777777777777777777666544433
No 116
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=28.61 E-value=5.4e+02 Score=24.82 Aligned_cols=54 Identities=11% Similarity=0.175 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017694 165 FERLIRDKQFLMMELVKLRQQQQNTRAYLQAMELRLEGTEKKQQQMMSFLARAM 218 (367)
Q Consensus 165 i~~LKrd~~~L~~El~~LRQqqq~~~~~l~~Me~RL~~~E~kQqqmm~FLak~~ 218 (367)
|..++++.+.|..|=...-.+.+.+...+..||.=++..+....++..-..+++
T Consensus 34 L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~ 87 (230)
T PF10146_consen 34 LEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLY 87 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666667777776666666667777777788777777777666666665555
No 117
>KOG4552 consensus Vitamin-D-receptor interacting protein complex component [Transcription]
Probab=28.55 E-value=5.6e+02 Score=24.97 Aligned_cols=40 Identities=25% Similarity=0.341 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017694 175 LMMELVKLRQQQQNTRAYLQAMELRLEGTEKKQQQMMSFL 214 (367)
Q Consensus 175 L~~El~~LRQqqq~~~~~l~~Me~RL~~~E~kQqqmm~FL 214 (367)
=++++.+|--+|+..+..|+.++.++..-....||+-.-|
T Consensus 58 ef~~llkla~eq~k~e~~m~~Lea~VEkrD~~IQqLqk~L 97 (272)
T KOG4552|consen 58 EFKTLLKLAPEQQKREQLMRTLEAHVEKRDEVIQQLQKNL 97 (272)
T ss_pred HHHHHHHHhHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3455666666666666667777766665555555544443
No 118
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=28.54 E-value=2.9e+02 Score=24.55 Aligned_cols=47 Identities=19% Similarity=0.325 Sum_probs=27.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017694 161 LDGEFERLIRDKQFLMMELVKLRQQQQNTRAYLQAMELRLEGTEKKQ 207 (367)
Q Consensus 161 l~~Ei~~LKrd~~~L~~El~~LRQqqq~~~~~l~~Me~RL~~~E~kQ 207 (367)
+..++..|...+..+-.||..|.+..+.+..++..++.+|..+..+.
T Consensus 19 ~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~l 65 (143)
T PF12718_consen 19 LEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKL 65 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555556666666666666666666666666655544443
No 119
>PRK02793 phi X174 lysis protein; Provisional
Probab=28.47 E-value=2.5e+02 Score=22.16 Aligned_cols=10 Identities=20% Similarity=0.169 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q 017694 206 KQQQMMSFLA 215 (367)
Q Consensus 206 kQqqmm~FLa 215 (367)
+|++-+.-|.
T Consensus 33 ~Qq~~I~~L~ 42 (72)
T PRK02793 33 AHEMEMAKLR 42 (72)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 120
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=28.38 E-value=4e+02 Score=24.46 Aligned_cols=52 Identities=23% Similarity=0.309 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHH
Q 017694 173 QFLMMELVKLRQQQQNTRAYLQAMELRLEGTEKKQQQMMSFLARAMQNPAFLQQLV 228 (367)
Q Consensus 173 ~~L~~El~~LRQqqq~~~~~l~~Me~RL~~~E~kQqqmm~FLak~~qnp~fl~qLv 228 (367)
..|..-|..| ++|+....+|..+...+...+.+...++.-|..+-+ -|..++
T Consensus 12 ~~L~~~L~~l-~~hq~~~~~I~~L~~e~~~ld~~i~~~~~~L~~~~~---~L~~~~ 63 (188)
T PF10018_consen 12 DELSSALEEL-QEHQENQARIQQLRAEIEELDEQIRDILKQLKEARK---ELRTLP 63 (188)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH
Confidence 3344444444 455566777777777777777766666666654433 444444
No 121
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=28.37 E-value=2.6e+02 Score=21.13 Aligned_cols=32 Identities=13% Similarity=0.304 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017694 165 FERLIRDKQFLMMELVKLRQQQQNTRAYLQAM 196 (367)
Q Consensus 165 i~~LKrd~~~L~~El~~LRQqqq~~~~~l~~M 196 (367)
+.+++.+.+.|..++..++++...+..++..+
T Consensus 19 ~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 19 YYQLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455555555555555555554444444433
No 122
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=28.26 E-value=3.9e+02 Score=26.08 Aligned_cols=40 Identities=20% Similarity=0.355 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017694 163 GEFERLIRDKQFLMMELVKLRQQQQNTRAYLQAMELRLEG 202 (367)
Q Consensus 163 ~Ei~~LKrd~~~L~~El~~LRQqqq~~~~~l~~Me~RL~~ 202 (367)
+|++.|++++..+..++..+.++|..-..+++++.-.|..
T Consensus 43 ee~~eLk~qnkli~K~l~ei~~~qd~reK~~~~I~ssL~e 82 (230)
T PF03904_consen 43 EEIQELKRQNKLIIKYLSEIEEKQDIREKNLKEIKSSLEE 82 (230)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999998887776666666655555444
No 123
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=27.94 E-value=79 Score=24.39 Aligned_cols=18 Identities=33% Similarity=0.521 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 017694 189 TRAYLQAMELRLEGTEKK 206 (367)
Q Consensus 189 ~~~~l~~Me~RL~~~E~k 206 (367)
++.+|..||.||+.+|++
T Consensus 30 iEqRLa~LE~rL~~ae~r 47 (60)
T PF11471_consen 30 IEQRLAALEQRLQAAEQR 47 (60)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444555556666555554
No 124
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]
Probab=27.79 E-value=3e+02 Score=29.77 Aligned_cols=13 Identities=31% Similarity=0.360 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHH
Q 017694 165 FERLIRDKQFLMM 177 (367)
Q Consensus 165 i~~LKrd~~~L~~ 177 (367)
++.|.++.+-|+.
T Consensus 501 ~eTll~niq~llk 513 (641)
T KOG3915|consen 501 IETLLTNIQGLLK 513 (641)
T ss_pred HHHHHHHHHHHHH
Confidence 4555555555544
No 125
>KOG4010 consensus Coiled-coil protein TPD52 [General function prediction only]
Probab=27.65 E-value=1.9e+02 Score=27.57 Aligned_cols=38 Identities=24% Similarity=0.198 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017694 163 GEFERLIRDKQFLMMELVKLRQQQQNTRAYLQAMELRL 200 (367)
Q Consensus 163 ~Ei~~LKrd~~~L~~El~~LRQqqq~~~~~l~~Me~RL 200 (367)
.|-+.|+.+..-+-.||+.|||-...-+.|...+.++|
T Consensus 44 ~Ekeelr~EL~kvEeEI~TLrqVLaAKerH~~ELKRKL 81 (208)
T KOG4010|consen 44 EEKEELRTELAKVEEEIVTLRQVLAAKERHAAELKRKL 81 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44556777777777777777776655555555555554
No 126
>PF03127 GAT: GAT domain; InterPro: IPR004152 The GAT domain is responsible for binding of GGA proteins to several members of the ARF family including ARF1 [] and ARF3. The GAT domain stabilises membrane bound ARF1 in its GTP bound state, by interfering with GAP proteins [].; GO: 0006886 intracellular protein transport, 0005622 intracellular; PDB: 1YD8_H 1WR6_C 1WRD_A 1O3X_A 1J2J_B 1NWM_X 1X79_A 1OXZ_A 1NAF_A.
Probab=27.44 E-value=1.8e+02 Score=23.82 Aligned_cols=81 Identities=14% Similarity=0.261 Sum_probs=47.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHHHh
Q 017694 162 DGEFERLIRDKQFLMMELVKLRQQQQNTRAYLQAMELRLEGTEKKQQQMMSFLARAMQNPAFLQQLVQQKEKRKELEEAM 241 (367)
Q Consensus 162 ~~Ei~~LKrd~~~L~~El~~LRQqqq~~~~~l~~Me~RL~~~E~kQqqmm~FLak~~qnp~fl~qLv~q~~~~k~l~~~~ 241 (367)
..+++..+. +..|+.|+..--............+.+-...+..-|.+|+.++..+- +..++..|++-++. |..++
T Consensus 10 ~~~l~~v~~-~~~lL~emL~~~~~~~~~~~~~el~~eL~~~ck~~r~~i~~li~~~~-dee~l~~lL~~ND~---L~~~l 84 (100)
T PF03127_consen 10 RSELEKVKN-NAKLLNEMLDNYDPGEESSSDNELIQELYESCKSMRPRIQRLIEEVE-DEELLGELLQANDE---LNQAL 84 (100)
T ss_dssp HHHHHHHHH-HHHHHHHHHHHTTTTTSTHHHHHHHHHHHHHHHHHHHHHHHHHHTST-TCHHHHHHHHHHHH---HHHHH
T ss_pred HHHHHHHHH-HHHHHHHHHHhcCCCCCCccchHHHHHHHHHHHHHHHHHHHHHhhcC-cHHHHHHHHHHHHH---HHHHH
Confidence 345555554 55666677655433334444444555555556666667777776544 44599999998874 44455
Q ss_pred cccccC
Q 017694 242 TKKRRR 247 (367)
Q Consensus 242 ~kKRr~ 247 (367)
.+..+.
T Consensus 85 ~~Y~~l 90 (100)
T PF03127_consen 85 ERYDRL 90 (100)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 554443
No 127
>PF12269 zf-CpG_bind_C: CpG binding protein zinc finger C terminal domain; InterPro: IPR022056 This domain family is found in eukaryotes, and is approximately 240 amino acids in length. This domain is the zinc finger domain of a CpG binding DNA methyltransferase protein. It contains a CxxC motif which forms the zinc finger and binds to DNA.
Probab=27.43 E-value=1.5e+02 Score=29.03 Aligned_cols=25 Identities=32% Similarity=0.448 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 017694 194 QAMELRLEGTEKKQQQMMSFLARAM 218 (367)
Q Consensus 194 ~~Me~RL~~~E~kQqqmm~FLak~~ 218 (367)
.....+|+.++.+++.|..|++++-
T Consensus 39 ~~v~~~l~eLe~~~~el~~~i~~~k 63 (236)
T PF12269_consen 39 QKVRNRLQELEKRFKELEAIIARAK 63 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666777788888888877643
No 128
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=27.36 E-value=3e+02 Score=21.38 Aligned_cols=25 Identities=20% Similarity=0.344 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 017694 187 QNTRAYLQAMELRLEGTEKKQQQMM 211 (367)
Q Consensus 187 q~~~~~l~~Me~RL~~~E~kQqqmm 211 (367)
..++.-..+.+.+|+..|.+.+.+.
T Consensus 21 ~kvk~~n~~~e~kLqeaE~rn~eL~ 45 (61)
T PF08826_consen 21 TKVKSANLAFESKLQEAEKRNRELE 45 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455666666665555543
No 129
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=27.00 E-value=4.6e+02 Score=23.50 Aligned_cols=44 Identities=20% Similarity=0.278 Sum_probs=22.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017694 161 LDGEFERLIRDKQFLMMELVKLRQQQQNTRAYLQAMELRLEGTE 204 (367)
Q Consensus 161 l~~Ei~~LKrd~~~L~~El~~LRQqqq~~~~~l~~Me~RL~~~E 204 (367)
+..++..++.+...+..+....+...+........|.+.++.+.
T Consensus 107 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 107 LESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555554444445555555555555555555444
No 130
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=26.91 E-value=2.5e+02 Score=28.73 Aligned_cols=53 Identities=15% Similarity=0.337 Sum_probs=18.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017694 161 LDGEFERLIRDKQFLMMELVKLRQQQ----QNTRAYLQAMELRLEGTEKKQQQMMSF 213 (367)
Q Consensus 161 l~~Ei~~LKrd~~~L~~El~~LRQqq----q~~~~~l~~Me~RL~~~E~kQqqmm~F 213 (367)
+..+++.||+.+.....++..+.... ..+..++..+|+|+..+|.+...|-.-
T Consensus 110 lkkEie~IKk~q~e~~~~i~~~~~~~~~~~~~l~~Ri~e~Eeris~lEd~~~~i~~~ 166 (370)
T PF02994_consen 110 LKKEIENIKKNQSEMKLEIENLKKKLENIDESLNSRIDELEERISELEDRIEEIEQA 166 (370)
T ss_dssp --------H-------------------------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhH
Confidence 55667777766655555666555443 245677888888888888877766443
No 131
>PHA02562 46 endonuclease subunit; Provisional
Probab=26.86 E-value=4e+02 Score=27.87 Aligned_cols=18 Identities=0% Similarity=0.239 Sum_probs=10.2
Q ss_pred HHHHHHHhhCcHHHHHHH
Q 017694 211 MSFLARAMQNPAFLQQLV 228 (367)
Q Consensus 211 m~FLak~~qnp~fl~qLv 228 (367)
..++...+++++|-..++
T Consensus 405 ~~~i~~~~~~~g~~~~i~ 422 (562)
T PHA02562 405 RGIVTDLLKDSGIKASII 422 (562)
T ss_pred HHHHHHHHHhhhHHHHHH
Confidence 445566666676654443
No 132
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=26.83 E-value=3.1e+02 Score=24.20 Aligned_cols=55 Identities=5% Similarity=0.145 Sum_probs=28.2
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017694 160 GLDGEFERLIRDKQFLMMELVKLRQQQQNTRAYLQAMELRLEGTEKKQQQMMSFLARA 217 (367)
Q Consensus 160 ~l~~Ei~~LKrd~~~L~~El~~LRQqqq~~~~~l~~Me~RL~~~E~kQqqmm~FLak~ 217 (367)
+|.+-+..+-+..+-++..|..-|.+. ..+|+.+..+|..+..-+++|..=+..+
T Consensus 40 ~m~~A~~~v~kql~~vs~~l~~tKkhL---sqRId~vd~klDe~~ei~~~i~~eV~~v 94 (126)
T PF07889_consen 40 SMSDAVASVSKQLEQVSESLSSTKKHL---SQRIDRVDDKLDEQKEISKQIKDEVTEV 94 (126)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 344445555555555655555554443 3455555555555555555554444333
No 133
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=26.70 E-value=2e+02 Score=27.71 Aligned_cols=24 Identities=25% Similarity=0.283 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 017694 164 EFERLIRDKQFLMMELVKLRQQQQ 187 (367)
Q Consensus 164 Ei~~LKrd~~~L~~El~~LRQqqq 187 (367)
.+.+++++++.|..|+..|+.+..
T Consensus 70 ~~~~l~~en~~L~~e~~~l~~~~~ 93 (276)
T PRK13922 70 SLFDLREENEELKKELLELESRLQ 93 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666666666555543
No 134
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=26.27 E-value=61 Score=34.71 Aligned_cols=15 Identities=20% Similarity=0.224 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHHH
Q 017694 164 EFERLIRDKQFLMME 178 (367)
Q Consensus 164 Ei~~LKrd~~~L~~E 178 (367)
+|+.|+++.+.|.++
T Consensus 32 kie~L~kql~~Lk~q 46 (489)
T PF11853_consen 32 KIEALKKQLEELKAQ 46 (489)
T ss_pred HHHHHHHHHHHHHHh
Confidence 333333333333333
No 135
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=26.27 E-value=2.6e+02 Score=23.13 Aligned_cols=44 Identities=9% Similarity=0.226 Sum_probs=33.6
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017694 160 GLDGEFERLIRDKQFLMMELVKLRQQQQNTRAYLQAMELRLEGT 203 (367)
Q Consensus 160 ~l~~Ei~~LKrd~~~L~~El~~LRQqqq~~~~~l~~Me~RL~~~ 203 (367)
..+.-+..|....+.|-.++.++..+...+..++..++.+|+.+
T Consensus 60 ~~~ea~~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~~ 103 (105)
T cd00632 60 EKEEARTELKERLETIELRIKRLERQEEDLQEKLKELQEKIQQA 103 (105)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555677888888888888888888888888888877777654
No 136
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=26.21 E-value=2.1e+02 Score=23.86 Aligned_cols=25 Identities=16% Similarity=0.262 Sum_probs=12.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 017694 162 DGEFERLIRDKQFLMMELVKLRQQQ 186 (367)
Q Consensus 162 ~~Ei~~LKrd~~~L~~El~~LRQqq 186 (367)
+..|+.|..++..|..|+..|+.+.
T Consensus 48 ek~v~~L~~e~~~l~~E~e~L~~~l 72 (87)
T PF12709_consen 48 EKKVDELENENKALKRENEQLKKKL 72 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555444
No 137
>PF07763 FEZ: FEZ-like protein; InterPro: IPR011680 This is a family of eukaryotic proteins thought to be involved in axonal outgrowth and fasciculation []. The N-terminal regions of these sequences are less conserved than the C-terminal regions, and are highly acidic []. The Caenorhabditis elegans homolog, UNC-76 (Q7JNU9 from SWISSPROT), may play structural and signalling roles in the control of axonal extension and adhesion (particularly in the presence of adjacent neuronal cells []) and these roles have also been postulated for other FEZ family proteins []. Certain homologs have been definitively found to interact with the N-terminal variable region (V1) of PKC-zeta, and this interaction causes cytoplasmic translocation of the FEZ family protein in mammalian neuronal cells []. The C-terminal region probably participates in the association with the regulatory domain of PKC-zeta []. The members of this family are predicted to form coiled-coil structures [, ], which may interact with members of the RhoA family of signalling proteins [], but are not thought to contain other characteristic protein motifs []. Certain members of this family are expressed almost exclusively in the brain, whereas others (such as FEZ2, Q76LN0 from SWISSPROT) are expressed in other tissues, and are thought to perform similar but unknown functions in these tissues [].
Probab=26.19 E-value=4.1e+02 Score=26.13 Aligned_cols=29 Identities=28% Similarity=0.566 Sum_probs=17.1
Q ss_pred HhhCcHHHHHHHHHHHHHHHHHHHhccccc
Q 017694 217 AMQNPAFLQQLVQQKEKRKELEEAMTKKRR 246 (367)
Q Consensus 217 ~~qnp~fl~qLv~q~~~~k~l~~~~~kKRr 246 (367)
=++| .||..|+.=+.++|+......|||+
T Consensus 209 EvKN-~FIS~Ll~VQnrqre~r~~~kkk~k 237 (244)
T PF07763_consen 209 EVKN-TFISLLLEVQNRQREQRELAKKKRK 237 (244)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3444 6888888766666766444333333
No 138
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=26.13 E-value=3.4e+02 Score=24.46 Aligned_cols=32 Identities=13% Similarity=0.174 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017694 182 LRQQQQNTRAYLQAMELRLEGTEKKQQQMMSF 213 (367)
Q Consensus 182 LRQqqq~~~~~l~~Me~RL~~~E~kQqqmm~F 213 (367)
++++......+++.+.+.+.....+...++..
T Consensus 71 l~Rk~~kl~~el~~~~~~~~~~~~~~~~~~~~ 102 (161)
T PF04420_consen 71 LNRKLDKLEEELEKLNKSLSSEKSSFDKSLSK 102 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444333333333333
No 139
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=26.12 E-value=4.5e+02 Score=28.75 Aligned_cols=43 Identities=26% Similarity=0.326 Sum_probs=37.2
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017694 160 GLDGEFERLIRDKQFLMMELVKLRQQQQNTRAYLQAMELRLEG 202 (367)
Q Consensus 160 ~l~~Ei~~LKrd~~~L~~El~~LRQqqq~~~~~l~~Me~RL~~ 202 (367)
.++.++..+|+....|--|+..|+.+.-.+..+|..+...|..
T Consensus 152 ~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~ 194 (546)
T KOG0977|consen 152 ELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDD 194 (546)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 4789999999999999999999999999898888887765543
No 140
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=26.10 E-value=4.3e+02 Score=22.86 Aligned_cols=54 Identities=17% Similarity=0.102 Sum_probs=36.7
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017694 160 GLDGEFERLIRDKQFLMMELVKLRQQQQNTRAYLQAMELRLEGTEKKQQQMMSF 213 (367)
Q Consensus 160 ~l~~Ei~~LKrd~~~L~~El~~LRQqqq~~~~~l~~Me~RL~~~E~kQqqmm~F 213 (367)
+|+..++.+|..+..|..+=-.|+-.++.+..+-.....|+..++.+...+..-
T Consensus 20 ~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~ 73 (107)
T PF09304_consen 20 SLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRN 73 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577778777777777777666677666677776677777777666655444333
No 141
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=26.08 E-value=3.1e+02 Score=22.78 Aligned_cols=33 Identities=9% Similarity=0.113 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017694 163 GEFERLIRDKQFLMMELVKLRQQQQNTRAYLQA 195 (367)
Q Consensus 163 ~Ei~~LKrd~~~L~~El~~LRQqqq~~~~~l~~ 195 (367)
-.+.+++++++.|..|...|+.+......++++
T Consensus 23 ~k~~ka~~~~~kL~~en~qlk~Ek~~~~~qvkn 55 (87)
T PF10883_consen 23 WKVKKAKKQNAKLQKENEQLKTEKAVAETQVKN 55 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677777777777777666666555444443
No 142
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=25.83 E-value=4.5e+02 Score=23.01 Aligned_cols=48 Identities=21% Similarity=0.241 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017694 163 GEFERLIRDKQFLMMELVKLRQQQQNTRAYLQAMELRLEGTEKKQQQMMSFLARA 217 (367)
Q Consensus 163 ~Ei~~LKrd~~~L~~El~~LRQqqq~~~~~l~~Me~RL~~~E~kQqqmm~FLak~ 217 (367)
.++..++.-...+..++..|+.....+..+ |..+.+++.++..-+.++
T Consensus 44 ~~~~~~~~~l~~i~~~l~~L~~~~~~~~~r-------l~~~r~r~~~L~hR~l~v 91 (141)
T PF13874_consen 44 EEIAQHRERLKEINDKLEELQKHDLETSAR-------LEEARRRHQELSHRLLRV 91 (141)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-------HHHHHHHHHHHHHHHHHH
Confidence 345555555566666666664444344444 444444444444434333
No 143
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=25.42 E-value=2.2e+02 Score=30.52 Aligned_cols=36 Identities=11% Similarity=0.125 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017694 168 LIRDKQFLMMELVKLRQQQQNTRAYLQAMELRLEGT 203 (367)
Q Consensus 168 LKrd~~~L~~El~~LRQqqq~~~~~l~~Me~RL~~~ 203 (367)
|.++.+.|.+|+..+.++.+.++.+|+.++..++.+
T Consensus 81 LEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~L 116 (475)
T PRK13729 81 MQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAAL 116 (475)
T ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence 333333333333333333333333444444444333
No 144
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=25.25 E-value=6e+02 Score=24.22 Aligned_cols=55 Identities=15% Similarity=0.044 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 017694 165 FERLIRDKQFLMMELVKLRQQQQNTRAYLQAMELRLEGTEKKQQQMMSFLARAMQ 219 (367)
Q Consensus 165 i~~LKrd~~~L~~El~~LRQqqq~~~~~l~~Me~RL~~~E~kQqqmm~FLak~~q 219 (367)
+..++.-.+.|..++...+|........+.+.+.-...+|.++.++-.-|..+.+
T Consensus 76 ~~~~ks~~qeLe~~L~~~~qk~~tl~e~~en~K~~~e~tEer~~el~kklnslkk 130 (203)
T KOG3433|consen 76 ICDRKSVLQELESQLATGSQKKATLGESIENRKAGREETEERTDELTKKLNSLKK 130 (203)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Confidence 4455666777888888888887777777777666677777777665554444333
No 145
>PF10482 CtIP_N: Tumour-suppressor protein CtIP N-terminal domain; InterPro: IPR019518 CtIP is predominantly a nuclear protein that complexes with both BRCA1 and the BRCA1-associated RING domain protein (BARD1). At the protein level, CtIP expression varies with cell cycle progression in a pattern identical to that of BRCA1. Thus, the steady-state levels of CtIP polypeptides, which remain low in resting cells and G1 cycling cells, increase dramatically as Dividing cells traverse the G1/S boundary. CtIP can potentially modulate the functions ascribed to BRCA1 in transcriptional regulation, DNA repair, and/or cell cycle checkpoint control []. This N-terminal domain carries a coiled-coil region and is essential for homodimerisation of the protein []. The C-terminal domain is family CtIP_C and carries functionally important CxxC and RHR motifs, absence of which lead cells to grow slowly and show hypersensitivity to genotoxins [].
Probab=25.11 E-value=3.4e+02 Score=23.86 Aligned_cols=43 Identities=26% Similarity=0.435 Sum_probs=31.0
Q ss_pred CchHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017694 160 GLDGEFERLIRDK-------QFLMMELVKLRQQQQNTRAYLQAMELRLEG 202 (367)
Q Consensus 160 ~l~~Ei~~LKrd~-------~~L~~El~~LRQqqq~~~~~l~~Me~RL~~ 202 (367)
|+...+..|+.++ +.|+.--..||.||..+...+..+|.||++
T Consensus 18 glq~K~~~L~~erc~Daqrleel~~knqqLreQqk~L~e~i~~LE~RLRa 67 (120)
T PF10482_consen 18 GLQNKLLELKKERCLDAQRLEELFSKNQQLREQQKTLHENIKVLENRLRA 67 (120)
T ss_pred HHHHHHHHHhHHHcccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4556666666542 345555556888888999999999999986
No 146
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=24.99 E-value=3.4e+02 Score=28.10 Aligned_cols=22 Identities=32% Similarity=0.348 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 017694 163 GEFERLIRDKQFLMMELVKLRQ 184 (367)
Q Consensus 163 ~Ei~~LKrd~~~L~~El~~LRQ 184 (367)
.|.++|+..++-|..++.+.|.
T Consensus 99 ~e~~qL~~qnqkL~nqL~~~~~ 120 (401)
T PF06785_consen 99 QESEQLQSQNQKLKNQLFHVRE 120 (401)
T ss_pred HHHHHHHHhHHHHHHHHHHHHH
Confidence 3445555555555555554443
No 147
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=24.83 E-value=4.5e+02 Score=26.23 Aligned_cols=49 Identities=18% Similarity=0.281 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017694 163 GEFERLIRDKQFLMMELVKLRQQQQNTRAYLQAMELRLEGTEKKQQQMM 211 (367)
Q Consensus 163 ~Ei~~LKrd~~~L~~El~~LRQqqq~~~~~l~~Me~RL~~~E~kQqqmm 211 (367)
.++..+|.+...+..+|...|++....+.++..++..+.....+.+++.
T Consensus 209 ~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~ 257 (325)
T PF08317_consen 209 EELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELL 257 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666666666666666666666666666666666665555444443
No 148
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=24.57 E-value=3.1e+02 Score=20.59 Aligned_cols=17 Identities=18% Similarity=0.454 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 017694 193 LQAMELRLEGTEKKQQQ 209 (367)
Q Consensus 193 l~~Me~RL~~~E~kQqq 209 (367)
+..|+.++..++.....
T Consensus 28 ~~~Le~~~~~L~~en~~ 44 (64)
T PF00170_consen 28 IEELEEKVEELESENEE 44 (64)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333344333333333
No 149
>PRK10548 flagellar biosynthesis protein FliT; Provisional
Probab=23.86 E-value=1.4e+02 Score=25.95 Aligned_cols=59 Identities=20% Similarity=0.204 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHH
Q 017694 173 QFLMMELVKLRQQQQNTRAYLQAMELRLEGTEKKQQQMMSFLARAMQNPAFLQQLVQQK 231 (367)
Q Consensus 173 ~~L~~El~~LRQqqq~~~~~l~~Me~RL~~~E~kQqqmm~FLak~~qnp~fl~qLv~q~ 231 (367)
.--|.+|+.+...+-..-..+......-.-.+..|++....|.+++.|-.-+..|++..
T Consensus 27 ~g~Wd~Li~lE~~y~~~Ve~l~~~~~~~~l~~~~q~~~~~lL~~IL~nda~Ir~Llq~r 85 (121)
T PRK10548 27 EGQWDELIEQEVAYVQAVEEIAHLTIPPDISTVMQEQLRPMLRQILDNEAELKQLLQQR 85 (121)
T ss_pred HCCHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777766665444333333222222234455677788888888888888888753
No 150
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=23.83 E-value=5.8e+02 Score=23.53 Aligned_cols=18 Identities=28% Similarity=0.484 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 017694 190 RAYLQAMELRLEGTEKKQ 207 (367)
Q Consensus 190 ~~~l~~Me~RL~~~E~kQ 207 (367)
+..+..|+.+|..++.+.
T Consensus 118 ~~~l~~l~~kl~e~k~k~ 135 (221)
T PF04012_consen 118 KEQLEELEAKLEELKSKR 135 (221)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333344444444444333
No 151
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=23.78 E-value=7e+02 Score=25.04 Aligned_cols=10 Identities=20% Similarity=0.537 Sum_probs=4.2
Q ss_pred chHHHHHHHH
Q 017694 161 LDGEFERLIR 170 (367)
Q Consensus 161 l~~Ei~~LKr 170 (367)
|+.++++|+.
T Consensus 50 lesqL~q~et 59 (333)
T KOG1853|consen 50 LESQLDQLET 59 (333)
T ss_pred HHHHHHHHHH
Confidence 3444444443
No 152
>PF04325 DUF465: Protein of unknown function (DUF465); InterPro: IPR007420 Family members are found in small bacterial proteins, and also in the heavy chains of eukaryotic myosin and kinesin, C-terminal of the motor domain. Members of this family may form coiled coil structures.; PDB: 1ZHC_A.
Probab=23.64 E-value=1.3e+02 Score=21.72 Aligned_cols=24 Identities=38% Similarity=0.423 Sum_probs=17.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHH
Q 017694 161 LDGEFERLIRDKQFLMMELVKLRQ 184 (367)
Q Consensus 161 l~~Ei~~LKrd~~~L~~El~~LRQ 184 (367)
-+.++.+||+++-.|.-||..+.+
T Consensus 25 ~d~~l~~LKk~kL~LKDei~~ll~ 48 (49)
T PF04325_consen 25 DDEELERLKKEKLRLKDEIYRLLR 48 (49)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHH-
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHc
Confidence 456788888888888888877654
No 153
>PRK15396 murein lipoprotein; Provisional
Probab=23.61 E-value=4e+02 Score=21.64 Aligned_cols=36 Identities=22% Similarity=0.235 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017694 163 GEFERLIRDKQFLMMELVKLRQQQQNTRAYLQAMEL 198 (367)
Q Consensus 163 ~Ei~~LKrd~~~L~~El~~LRQqqq~~~~~l~~Me~ 198 (367)
.++++|..+.+.|..++..+.+..+.++..+++-.+
T Consensus 25 ~kvd~LssqV~~L~~kvdql~~dv~~~~~~~~~a~~ 60 (78)
T PRK15396 25 AKIDQLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKD 60 (78)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366677777777777777776666666665554443
No 154
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=23.56 E-value=3.8e+02 Score=22.54 Aligned_cols=17 Identities=29% Similarity=0.522 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 017694 188 NTRAYLQAMELRLEGTE 204 (367)
Q Consensus 188 ~~~~~l~~Me~RL~~~E 204 (367)
.++.++.+|+.+++.+.
T Consensus 76 el~G~~~~l~~~l~~v~ 92 (106)
T PF10805_consen 76 ELRGELKELSARLQGVS 92 (106)
T ss_pred HHHhHHHHHHHHHHHHH
Confidence 33334444444444443
No 155
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=23.43 E-value=3.3e+02 Score=29.02 Aligned_cols=40 Identities=38% Similarity=0.484 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017694 163 GEFERLIRDKQFLMMELVKLRQQQQNTRAYLQAMELRLEG 202 (367)
Q Consensus 163 ~Ei~~LKrd~~~L~~El~~LRQqqq~~~~~l~~Me~RL~~ 202 (367)
.|++.|+.+...+..|+..|+.|.+....+++.++.++..
T Consensus 274 ~el~~l~~E~~~~~ee~~~l~~Qi~~l~~e~~d~e~~~~~ 313 (511)
T PF09787_consen 274 IELEELKQERDHLQEEIQLLERQIEQLRAELQDLEAQLEG 313 (511)
T ss_pred hcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4678899999999999999999998888888888777665
No 156
>PF06102 DUF947: Domain of unknown function (DUF947); InterPro: IPR009292 This is a family of eukaryotic proteins with unknown function.
Probab=23.36 E-value=4.7e+02 Score=23.93 Aligned_cols=36 Identities=25% Similarity=0.368 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Q 017694 171 DKQFLMMELVKLR--QQQQNTRAYLQAMELRLEGTEKK 206 (367)
Q Consensus 171 d~~~L~~El~~LR--Qqqq~~~~~l~~Me~RL~~~E~k 206 (367)
+.+.|..+|...+ ...+.+...|+.|+.++...+.+
T Consensus 64 E~~~Lk~~lk~~k~~~~~e~lk~~L~~~~~q~~~~~~~ 101 (168)
T PF06102_consen 64 EIKELKKQLKKTKDPEEREELKRELQRMESQLKARKRK 101 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444332 33344555555666655554433
No 157
>KOG1760 consensus Molecular chaperone Prefoldin, subunit 4 [Posttranslational modification, protein turnover, chaperones]
Probab=23.34 E-value=3e+02 Score=24.59 Aligned_cols=39 Identities=21% Similarity=0.251 Sum_probs=32.0
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017694 160 GLDGEFERLIRDKQFLMMELVKLRQQQQNTRAYLQAMEL 198 (367)
Q Consensus 160 ~l~~Ei~~LKrd~~~L~~El~~LRQqqq~~~~~l~~Me~ 198 (367)
.++.-.+.|...+..|..+|..|++++..+.++|.++..
T Consensus 78 ~~~~~~~~LEe~ke~l~k~i~~les~~e~I~~~m~~LK~ 116 (131)
T KOG1760|consen 78 KLDKLQDQLEEKKETLEKEIEELESELESISARMDELKK 116 (131)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667788889999999999999999888888876654
No 158
>PRK15396 murein lipoprotein; Provisional
Probab=23.20 E-value=3.9e+02 Score=21.71 Aligned_cols=44 Identities=16% Similarity=0.201 Sum_probs=36.7
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017694 160 GLDGEFERLIRDKQFLMMELVKLRQQQQNTRAYLQAMELRLEGT 203 (367)
Q Consensus 160 ~l~~Ei~~LKrd~~~L~~El~~LRQqqq~~~~~l~~Me~RL~~~ 203 (367)
.|..+++.|+.+...|..++..+|..-+..+.+-..-.+||..+
T Consensus 29 ~LssqV~~L~~kvdql~~dv~~~~~~~~~a~~eA~raN~RlDn~ 72 (78)
T PRK15396 29 QLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAARANQRLDNQ 72 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36778888998889999999999998888888888888887653
No 159
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=23.12 E-value=4.3e+02 Score=21.74 Aligned_cols=35 Identities=20% Similarity=0.374 Sum_probs=23.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017694 161 LDGEFERLIRDKQFLMMELVKLRQQQQNTRAYLQA 195 (367)
Q Consensus 161 l~~Ei~~LKrd~~~L~~El~~LRQqqq~~~~~l~~ 195 (367)
|+..|...=.....|.+||..|+.+...+..+.+.
T Consensus 9 LE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~ 43 (79)
T PRK15422 9 LEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQN 43 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555556777888888887776666665554
No 160
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=22.88 E-value=3.7e+02 Score=20.87 Aligned_cols=51 Identities=16% Similarity=0.251 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHH
Q 017694 175 LMMELVKLRQQQQNTRAYLQAMELRLEGTEKKQQQMMSFLARAMQNPAFLQ 225 (367)
Q Consensus 175 L~~El~~LRQqqq~~~~~l~~Me~RL~~~E~kQqqmm~FLak~~qnp~fl~ 225 (367)
+...+.++...+.+....+..+|.+....+.+...+-.-|.++-.|-..+.
T Consensus 4 i~e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~n~kW~~ 54 (71)
T PF10779_consen 4 IKEKLNRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKIKSNTKWIW 54 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666666666666777777777666665555555555555444433
No 161
>PRK14143 heat shock protein GrpE; Provisional
Probab=22.79 E-value=7.1e+02 Score=24.20 Aligned_cols=41 Identities=20% Similarity=0.174 Sum_probs=28.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017694 161 LDGEFERLIRDKQFLMMELVKLRQQQQNTRAYLQAMELRLE 201 (367)
Q Consensus 161 l~~Ei~~LKrd~~~L~~El~~LRQqqq~~~~~l~~Me~RL~ 201 (367)
...++..|+.+...|..|+..++.+...+.+.+.+...|.+
T Consensus 65 ~~~~~~~l~~el~~l~~e~~elkd~~lR~~AdfeN~RKR~~ 105 (238)
T PRK14143 65 NAARLAQLEQELESLKQELEELNSQYMRIAADFDNFRKRTS 105 (238)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567777777777777777777777666666666666654
No 162
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=22.68 E-value=4.7e+02 Score=23.62 Aligned_cols=46 Identities=17% Similarity=0.171 Sum_probs=30.3
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017694 160 GLDGEFERLIRDKQFLMMELVKLRQQQQNTRAYLQAMELRLEGTEK 205 (367)
Q Consensus 160 ~l~~Ei~~LKrd~~~L~~El~~LRQqqq~~~~~l~~Me~RL~~~E~ 205 (367)
..+.-++.|++..+.|-..+.++.+..+.+..++..++..++..-+
T Consensus 91 ~~~eAie~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~~~q 136 (145)
T COG1730 91 SADEAIEFLKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQLQQ 136 (145)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667788888888877777777777666665555555555444333
No 163
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=22.44 E-value=8.3e+02 Score=24.81 Aligned_cols=50 Identities=18% Similarity=0.253 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017694 169 IRDKQFLMMELVKLRQQQQNTRAYLQAMELRLEGTEKKQQQMMSFLARAM 218 (367)
Q Consensus 169 Krd~~~L~~El~~LRQqqq~~~~~l~~Me~RL~~~E~kQqqmm~FLak~~ 218 (367)
..+...|..+|+.+++..+....+-..+..+|..+...|.+|.+=|.-+-
T Consensus 233 QEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elq 282 (306)
T PF04849_consen 233 QEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQ 282 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666667777666666666666777788888777777766555433
No 164
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=22.35 E-value=3.1e+02 Score=29.88 Aligned_cols=49 Identities=20% Similarity=0.314 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017694 163 GEFERLIRDKQFLMMELVKLRQQQQNTRAYLQAMELRLEGTEKKQQQMM 211 (367)
Q Consensus 163 ~Ei~~LKrd~~~L~~El~~LRQqqq~~~~~l~~Me~RL~~~E~kQqqmm 211 (367)
.++.++..++..|+.+|+.++.+..-+..+...|.+.|+.+-+.|.+|-
T Consensus 226 ~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~ 274 (596)
T KOG4360|consen 226 KELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLT 274 (596)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 3344455556667777777766665555555556666666655555543
No 165
>PHA01819 hypothetical protein
Probab=22.30 E-value=1.2e+02 Score=25.97 Aligned_cols=27 Identities=37% Similarity=0.605 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCcHHH
Q 017694 195 AMELRLEGTEKKQQQMMSFLARAMQNPAFL 224 (367)
Q Consensus 195 ~Me~RL~~~E~kQqqmm~FLak~~qnp~fl 224 (367)
.+++|+..+| |||..||..-|+-|+-+
T Consensus 74 vleqri~sle---qq~ttflssq~qqpqqv 100 (129)
T PHA01819 74 VLEQRIASLE---QQVTTFLSSQMQQPQQV 100 (129)
T ss_pred HHHHHHHHHH---HHHHHHHHHHhhCchhh
Confidence 4667777666 58899999888888544
No 166
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=22.20 E-value=7.2e+02 Score=24.01 Aligned_cols=32 Identities=19% Similarity=0.309 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017694 178 ELVKLRQQQQNTRAYLQAMELRLEGTEKKQQQ 209 (367)
Q Consensus 178 El~~LRQqqq~~~~~l~~Me~RL~~~E~kQqq 209 (367)
.+..|+.+...++.....++.+|..++.+...
T Consensus 224 ~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~ 255 (312)
T PF00038_consen 224 QIQSLQAELESLRAKNASLERQLRELEQRLDE 255 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHhhhhhhccccchhhhhhhHHHHHHHHHH
Confidence 33333333333444444455555555544444
No 167
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=22.05 E-value=4.1e+02 Score=22.88 Aligned_cols=46 Identities=24% Similarity=0.259 Sum_probs=32.9
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017694 160 GLDGEFERLIRDKQFLMMELVKLRQQQQNTRAYLQAMELRLEGTEK 205 (367)
Q Consensus 160 ~l~~Ei~~LKrd~~~L~~El~~LRQqqq~~~~~l~~Me~RL~~~E~ 205 (367)
.+++-++.|++....|-..+.++.++......++..+...++.+..
T Consensus 91 ~~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~ 136 (140)
T PRK03947 91 DLDEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQLQQ 136 (140)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677778888888888777777777777777777666666655443
No 168
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=21.96 E-value=3.5e+02 Score=21.60 Aligned_cols=42 Identities=21% Similarity=0.210 Sum_probs=28.9
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017694 160 GLDGEFERLIRDKQFLMMELVKLRQQQQNTRAYLQAMELRLE 201 (367)
Q Consensus 160 ~l~~Ei~~LKrd~~~L~~El~~LRQqqq~~~~~l~~Me~RL~ 201 (367)
..+.-++.|+.+...+-.++.+|+.+...+..++..++..|.
T Consensus 59 ~~~~~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l~ 100 (106)
T PF01920_consen 59 DKEEAIEELEERIEKLEKEIKKLEKQLKYLEKKLKELKKKLY 100 (106)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556777777788888888777777666666666665544
No 169
>PF08946 Osmo_CC: Osmosensory transporter coiled coil; InterPro: IPR015041 The osmosensory transporter coiled coil is a C-terminal domain found in various bacterial osmoprotective transporters, such as ProP, Proline/betaine transporter, Proline permease 2 and the citrate proton symporters. It adopts an antiparallel coiled-coil structure, and is essential for osmosensory and osmoprotectant transporter function []. ; PDB: 1R48_B.
Probab=21.33 E-value=1.9e+02 Score=21.49 Aligned_cols=28 Identities=14% Similarity=0.342 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017694 183 RQQQQNTRAYLQAMELRLEGTEKKQQQM 210 (367)
Q Consensus 183 RQqqq~~~~~l~~Me~RL~~~E~kQqqm 210 (367)
++.+.+++..+..+.+.+..+|.|-+.+
T Consensus 11 qe~~d~IEqkiedid~qIaeLe~KR~~L 38 (46)
T PF08946_consen 11 QEHYDNIEQKIEDIDEQIAELEAKRQRL 38 (46)
T ss_dssp ----THHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHhHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555555555554
No 170
>PF08781 DP: Transcription factor DP; InterPro: IPR014889 DP forms a heterodimer with E2F and regulates genes involved in cell cycle progression. The transcriptional activity of E2F is inhibited by the retinoblastoma protein which binds to the E2F-DP heterodimer [] and negatively regulates the G1-S transition. ; PDB: 2AZE_A.
Probab=21.26 E-value=4.6e+02 Score=23.69 Aligned_cols=10 Identities=30% Similarity=0.617 Sum_probs=6.0
Q ss_pred HHHHHHHHHH
Q 017694 224 LQQLVQQKEK 233 (367)
Q Consensus 224 l~qLv~q~~~ 233 (367)
++.|++.+..
T Consensus 34 ~knLv~RN~~ 43 (142)
T PF08781_consen 34 FKNLVQRNRQ 43 (142)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4567776653
No 171
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=21.26 E-value=4e+02 Score=22.23 Aligned_cols=42 Identities=17% Similarity=0.339 Sum_probs=26.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017694 161 LDGEFERLIRDKQFLMMELVKLRQQQQNTRAYLQAMELRLEG 202 (367)
Q Consensus 161 l~~Ei~~LKrd~~~L~~El~~LRQqqq~~~~~l~~Me~RL~~ 202 (367)
.++-+..|+.....+-..+..+..+...+..++..++.+|+.
T Consensus 65 ~~e~~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~~ 106 (110)
T TIGR02338 65 KEEAIQELKEKKETLELRVKTLQRQEERLREQLKELQEKIQE 106 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344456666666666666777766666666666666655543
No 172
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=21.23 E-value=5.3e+02 Score=27.60 Aligned_cols=50 Identities=24% Similarity=0.301 Sum_probs=39.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017694 161 LDGEFERLIRDKQFLMMELVKLRQQQQNTRAYLQAMELRLEGTEKKQQQM 210 (367)
Q Consensus 161 l~~Ei~~LKrd~~~L~~El~~LRQqqq~~~~~l~~Me~RL~~~E~kQqqm 210 (367)
+..+.+..|++......|+.+++++...++..+..++.||+.+.+.-...
T Consensus 377 l~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka~i~t~E~rL~aa~ke~eaa 426 (522)
T PF05701_consen 377 LSSEAEEAKKEAEEAKEEVEKAKEEAEQTKAAIKTAEERLEAALKEAEAA 426 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566777778888888899999999999999999999988776544443
No 173
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=21.18 E-value=3.9e+02 Score=23.08 Aligned_cols=17 Identities=29% Similarity=0.348 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 017694 167 RLIRDKQFLMMELVKLR 183 (367)
Q Consensus 167 ~LKrd~~~L~~El~~LR 183 (367)
+|......|..|+..|+
T Consensus 12 ~le~~l~~l~~el~~LK 28 (110)
T PRK13169 12 DLEQNLGVLLKELGALK 28 (110)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 174
>PF04051 TRAPP: Transport protein particle (TRAPP) component; InterPro: IPR007194 TRAPP plays a key role in the targeting and/or fusion of ER-to-Golgi transport vesicles with their acceptor compartment. TRAPP is a large multimeric protein that contains at least 10 subunits. This family contains many TRAPP family proteins. The Bet3 subunit is one of the better characterised TRAPP proteins and has a dimeric structure [] with hydrophobic channels. The channel entrances are located on a putative membrane-interacting surface that is distinctively flat, wide and decorated with positively charged residues. Bet3 is proposed to localise TRAPP to the Golgi [].; PDB: 2J3R_A 1WC9_A 2J3T_A 2PWN_A 2J3W_E 1WC8_A 3CUE_N 2C0J_B 3KXC_A 2CFH_A ....
Probab=21.06 E-value=1.3e+02 Score=26.49 Aligned_cols=65 Identities=18% Similarity=0.341 Sum_probs=43.9
Q ss_pred CCchHHH-HHhhccCCCCCCceEEcCCCCeEEEeCC-ccchhcc-cCCCCCCCCcchHHhh-----hccccccc
Q 017694 45 PPPFLTK-TYEMVDDPNTNEVVSWSRGGVSFVVWDP-HAFSTSL-LPRHFKHSNFSSFVRQ-----LNTYGFRK 110 (367)
Q Consensus 45 ~~~Fl~K-Ly~mv~dp~~~~iIsWs~~G~sFvI~d~-~~F~~~v-LP~~Fkh~nfsSFvRQ-----LN~YGFrK 110 (367)
.-.|+.| +|.++=....+ .+.|+.+.+.|+|.|. ..+.+.| +|.-..+-+|++|+.= |..-||.-
T Consensus 57 ~~~fI~k~~W~~~fgk~~d-~l~~n~~~~~y~i~d~~~~~~~~v~~p~~~~~l~~~~f~~GiIrGaL~~lg~~~ 129 (152)
T PF04051_consen 57 ILKFICKDFWKMLFGKQAD-NLKTNHDRGEYVITDNDFPLNQFVSLPEEYEGLNYLAFPCGIIRGALESLGFPA 129 (152)
T ss_dssp HHHHHHHHHHHHHHSS--S-EEEEETTSTEEEEEEST-CCCTTSTTCGCGTTSHTTHHHHHHHHHHHHHTTEEE
T ss_pred HHHHHHHHHHHHHhCCCCc-cccccCCCCeEEEecCccchhhhhccchhhccCchhhhHHHHHHHHHHHCCCce
Confidence 3579999 89998777554 8999996667888865 3333322 4544556678888864 67778874
No 175
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=20.77 E-value=4.8e+02 Score=23.46 Aligned_cols=25 Identities=24% Similarity=0.333 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 017694 177 MELVKLRQQQQNTRAYLQAMELRLE 201 (367)
Q Consensus 177 ~El~~LRQqqq~~~~~l~~Me~RL~ 201 (367)
.||++|+|.-.+++++==+..=|++
T Consensus 47 eEVvrlKQrRRTLKNRGYA~sCR~K 71 (135)
T KOG4196|consen 47 EEVVRLKQRRRTLKNRGYAQSCRVK 71 (135)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 4777888877766664433333333
No 176
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=20.56 E-value=93 Score=32.22 Aligned_cols=75 Identities=17% Similarity=0.363 Sum_probs=43.4
Q ss_pred hHHHHHhhccCCCCC----CceEEcCCCCeEEEeCCccchhccc--------------C--CCCCCCCcchHHhhhcccc
Q 017694 48 FLTKTYEMVDDPNTN----EVVSWSRGGVSFVVWDPHAFSTSLL--------------P--RHFKHSNFSSFVRQLNTYG 107 (367)
Q Consensus 48 Fl~KLy~mv~dp~~~----~iIsWs~~G~sFvI~d~~~F~~~vL--------------P--~~Fkh~nfsSFvRQLN~YG 107 (367)
|..|-|.++..-.++ .-|.|+|||+...|||.-.=.+ |+ | +|-.-..+.--+|-||..-
T Consensus 163 ~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leyk-v~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~t 241 (447)
T KOG4497|consen 163 SSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYK-VYAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFT 241 (447)
T ss_pred HhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhhe-eeeeeeccceeEEEeccccceEEeeccchhhhhhceee
Confidence 456778888654443 2489999999999998643332 22 1 1222344556667777654
Q ss_pred ccccCCCCceeecCCccccc
Q 017694 108 FRKIDPDRWEFSNEGFLRGE 127 (367)
Q Consensus 108 FrKv~~d~~eF~h~~F~Rg~ 127 (367)
++-.. +|-|..=.++-
T Consensus 242 Wk~f~----eflhl~s~~dp 257 (447)
T KOG4497|consen 242 WKPFG----EFLHLCSYHDP 257 (447)
T ss_pred eeehh----hhccchhccCc
Confidence 43322 45565444443
No 177
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=20.46 E-value=3.9e+02 Score=20.33 Aligned_cols=25 Identities=28% Similarity=0.482 Sum_probs=14.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHH
Q 017694 161 LDGEFERLIRDKQFLMMELVKLRQQ 185 (367)
Q Consensus 161 l~~Ei~~LKrd~~~L~~El~~LRQq 185 (367)
++.|+.+|.++..-+..++.++...
T Consensus 2 ~~~E~~rL~Kel~kl~~~i~~~~~k 26 (66)
T PF10458_consen 2 VEAEIERLEKELEKLEKEIERLEKK 26 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666665555555443
No 178
>PF10376 Mei5: Double-strand recombination repair protein ; InterPro: IPR018468 Mei5 is one of a pair of meiosis-specific proteins which facilitate the loading of Dmc1 on to Rad51 on DNA at double-strand breaks during recombination. Recombination is carried out by a large protein complex based around the two RecA homologues, Rad51 and Dmc1 []. This complex may play both a catalytic and a structural role in the interaction between homologous chromosomes during meiosis. Mei5 is seen to contain a coiled-coli region.
Probab=20.37 E-value=7.3e+02 Score=23.83 Aligned_cols=58 Identities=17% Similarity=0.169 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 017694 163 GEFERLIRDKQFLMMELVKLRQ-QQQNTRAYLQAMELRLEGTEKKQQQMMSFLARAMQN 220 (367)
Q Consensus 163 ~Ei~~LKrd~~~L~~El~~LRQ-qqq~~~~~l~~Me~RL~~~E~kQqqmm~FLak~~qn 220 (367)
.+-.+|.++.+....++.+|.. .++.+++.+..|+..+...+..-|+.+.=|...|..
T Consensus 138 ~ek~kL~~q~~e~~e~lr~L~~~k~~r~Kn~~~~Lq~lI~Kwr~~~q~~l~eL~~~~~~ 196 (221)
T PF10376_consen 138 EEKRKLEKQVDEKEEELRRLKLVKQYRSKNDLEQLQSLIKKWRSASQEALYELQSEMSE 196 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3334444444444444544433 234566666666666666665556655555555443
No 179
>PF10393 Matrilin_ccoil: Trimeric coiled-coil oligomerisation domain of matrilin; InterPro: IPR019466 This entry represents a short domain found the matrilin (cartilage matrix) proteins. It forms a coiled coil structure and contains a single cysteine residue at its start which is likely to form a di-sulphide bridge with a corresponding cysteine in an upstream EGF domain (IPR006209 from INTERPRO), thereby spanning the VWA domain of the protein (IPR002035 from INTERPRO).This domain is likely to be responsible for protein trimerisation []. ; PDB: 1AQ5_C.
Probab=20.18 E-value=2.6e+02 Score=20.65 Aligned_cols=18 Identities=33% Similarity=0.399 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 017694 190 RAYLQAMELRLEGTEKKQ 207 (367)
Q Consensus 190 ~~~l~~Me~RL~~~E~kQ 207 (367)
...+.+|..||+.+|.++
T Consensus 29 t~kL~~vs~RLe~LEn~~ 46 (47)
T PF10393_consen 29 TQKLDAVSKRLEALENRL 46 (47)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcc
Confidence 344677777777777654
Done!