BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017699
(367 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CIQ|A Chain A, Structure-Based Functional Annotation: Yeast Ymr099c Codes
For A D-Hexose-6-Phosphate Mutarotase
Length = 297
Score = 124 bits (310), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 87/276 (31%), Positives = 124/276 (44%), Gaps = 23/276 (8%)
Query: 81 CSAEIYLYGGQVISWKNEYGEELLFLSSKATFTHPKPIRGGIPICFPQFANHGS------ 134
S I YG V SWK + EE L+LS+ A KP+RGGIP+ FP F + +
Sbjct: 20 TSVHILKYGATVYSWKLK-SEEQLWLSTAAKLDGSKPVRGGIPLVFPVFGKNSTDEHLSK 78
Query: 135 LEKHGFARSRVWSIDPDPPPFSANSSSQACVDLILK---HSEEEVKIWPHRYEFRLRITL 191
L +HG AR+ W + V LK + E K+WP Y L + L
Sbjct: 79 LPQHGLARNSTWEF------LGQTKENPPTVQFGLKPEIANPELTKLWPMDYLLILTVEL 132
Query: 192 GPGGDLMLTSRIRNTNTDGKSXXXXXXXXXXXXVSDISEVRVEGLETLDYLDNLKDKERF 251
G D + T+ + K + DI V L + D L KE +
Sbjct: 133 G--SDYLKTAIEVENTSSSKELKFNWLFHTYFRIEDIEGTMVSNLAGMKLYDQLL-KESY 189
Query: 252 TEQGDAITFESEVDKVY--LSTPTKIAILDHERKRTFVLRKDGLPDAVVWNPWDKKAKAM 309
++ +TF E D +Y +S I I+D + + L++ LPD VVWNPW +K++ M
Sbjct: 190 VDKHPVVTFNQETDVIYQNVSAERAIQIVD-KGVQIHTLKRYNLPDTVVWNPWIEKSQGM 248
Query: 310 ADFGDDE-YKHMLCVEAACVEKPIILKPGEEWRGRQ 344
ADF Y+ M+C+E V I L PG++W Q
Sbjct: 249 ADFEPKTGYQQMICIEPGHVHDFISLAPGKKWNAYQ 284
>pdb|2CIR|A Chain A, Structure-Based Functional Annotation: Yeast Ymr099c Codes
For A D-Hexose-6-Phosphate Mutarotase. Complex With
Glucose-6-Phosphate
pdb|2CIS|A Chain A, Structure-Based Functional Annotation: Yeast Ymr099c Codes
For A D-Hexose-6-Phosphate Mutarotase. Complex With
Tagatose-6-Phosphate
Length = 297
Score = 123 bits (309), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 87/276 (31%), Positives = 124/276 (44%), Gaps = 23/276 (8%)
Query: 81 CSAEIYLYGGQVISWKNEYGEELLFLSSKATFTHPKPIRGGIPICFPQFANHGS------ 134
S I YG V SWK + EE L+LS+ A KP+RGGIP+ FP F + +
Sbjct: 20 TSVHILKYGATVYSWKLK-SEEQLWLSTAAKLDGSKPVRGGIPLVFPVFGKNSTDEHLSK 78
Query: 135 LEKHGFARSRVWSIDPDPPPFSANSSSQACVDLILK---HSEEEVKIWPHRYEFRLRITL 191
L +HG AR+ W + V LK + E K+WP Y L + L
Sbjct: 79 LPQHGLARNSTWEF------LGQTKENPPTVQFGLKPEIANPELTKLWPMDYLLILTVEL 132
Query: 192 GPGGDLMLTSRIRNTNTDGKSXXXXXXXXXXXXVSDISEVRVEGLETLDYLDNLKDKERF 251
G D + T+ + K + DI V L + D L KE +
Sbjct: 133 G--SDYLKTAIEVENTSSSKELKFNWLFHTYFRIEDIEGTMVSNLAGMKLYDQLL-KESY 189
Query: 252 TEQGDAITFESEVDKVY--LSTPTKIAILDHERKRTFVLRKDGLPDAVVWNPWDKKAKAM 309
++ +TF E D +Y +S I I+D + + L++ LPD VVWNPW +K++ M
Sbjct: 190 VDKHPVVTFNQETDVIYQNVSAERAIQIVD-KGVQIHTLKRYNLPDTVVWNPWIEKSQGM 248
Query: 310 ADFGDDE-YKHMLCVEAACVEKPIILKPGEEWRGRQ 344
ADF Y+ M+C+E V I L PG++W Q
Sbjct: 249 ADFEPKTGYQQMICIEPGHVHDFISLAPGKKWNAYQ 284
>pdb|2HTA|A Chain A, Crystal Structure Of A Putative Mutarotase (Yead) From
Salmonella Typhimurium In Orthorhombic Form
pdb|2HTA|B Chain B, Crystal Structure Of A Putative Mutarotase (Yead) From
Salmonella Typhimurium In Orthorhombic Form
pdb|2HTB|A Chain A, Crystal Structure Of A Putative Mutarotase (Yead) From
Salmonella Typhimurium In Monoclinic Form
pdb|2HTB|B Chain B, Crystal Structure Of A Putative Mutarotase (Yead) From
Salmonella Typhimurium In Monoclinic Form
pdb|2HTB|C Chain C, Crystal Structure Of A Putative Mutarotase (Yead) From
Salmonella Typhimurium In Monoclinic Form
pdb|2HTB|D Chain D, Crystal Structure Of A Putative Mutarotase (Yead) From
Salmonella Typhimurium In Monoclinic Form
Length = 309
Score = 99.0 bits (245), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 75/253 (29%), Positives = 107/253 (42%), Gaps = 20/253 (7%)
Query: 83 AEIYLYGGQVISWKNEYGEELLFLSSKATFTHPKPIRGGIPICFPQF--ANHGSLEKHGF 140
A L G ++SWK EE+L+LS+ F +RGG+PIC+P F A L HGF
Sbjct: 53 ASFALQGAHLLSWKPVGEEEVLWLSNNTPFKTGVALRGGVPICWPWFGPAAQQGLPSHGF 112
Query: 141 ARSRVWSIDPDPPPFSANSSSQACVDLI--LKHSEEEVKIWPHRYEFRLRITLGPGGDLM 198
AR+ W++ A++ V L L+ SE K WPH + R +G ++
Sbjct: 113 ARNLPWAL-------KAHNEDDNGVMLTFELQSSEATRKYWPHDFTLLARFKVGKTCEIE 165
Query: 199 LTSRIRNTNTDGKSXXXXXXXXXXXXVSDISEVRVEGLETLDYLDNLKDKERFTEQGDAI 258
L + T V DI+ V+V GL ++D + D +
Sbjct: 166 LEAHGEFATTSA--------LHSYFNVGDIANVKVSGLGD-RFIDKVNDAKEGVLTDGIQ 216
Query: 259 TFESEVDKVYLSTPTKIAILDHERKRTFVLRKDGLPDAVVWNPWDKKAKAMADFGDDEYK 318
TF D+VYL+ I D RT + + V WNP + +M D DD YK
Sbjct: 217 TFPDRTDRVYLNPEACSVIHDATLNRTIDVVHHHHLNVVGWNPGPALSVSMGDMPDDGYK 276
Query: 319 HMLCVEAACVEKP 331
+CVE P
Sbjct: 277 TFVCVETVYATAP 289
>pdb|1JOV|A Chain A, Crystal Structure Analysis Of Hi1317
Length = 270
Score = 88.6 bits (218), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 75/264 (28%), Positives = 116/264 (43%), Gaps = 42/264 (15%)
Query: 82 SAEIYLYGGQVISWKNEYG-EELLFLSSKATFTHPKPIRGGIPICFPQFANHGSLEK--H 138
+A+I L G Q+ISWK + +++L+LS F + IRGG+PIC+P F G +++ H
Sbjct: 32 TAKISLQGAQLISWKPQNAKQDVLWLSEVEPFKNGNAIRGGVPICYPWF---GGVKQPAH 88
Query: 139 GFARSRVWSIDPDPPPFSANSSSQACVDLILKHSEEEVKIWPHRYEFRLRITLG---PGG 195
G AR R+W + S + + R EF L L
Sbjct: 89 GTARIRLWQL-----------------------SHYYISVHKVRLEFELFSDLNIIEAKV 125
Query: 196 DLMLTSRIRNTNTDGKSXXXXXXXXXXXXVSDISEVRVEGL-ETLDYLDNLKDKERFTEQ 254
++ T + T T + DI++V V+GL ET ++L ++
Sbjct: 126 SMVFTDKCHLTFTHYGEESAQAALHTYFNIGDINQVEVQGLPETC--FNSLNQQQENVPS 183
Query: 255 GDAITFESEVDKVYLSTPTKIAILDHERKRTFVLRKDGLPDAVVWNPWDKKAKAMADFGD 314
I+ VD +Y + + ILD RT L V+WNPW KK M++ G
Sbjct: 184 PRHIS--ENVDCIYSAENMQNQILDKSFNRTIALHHHNASQFVLWNPWHKKTSGMSETG- 240
Query: 315 DEYKHMLCVEAACVEKPIILKPGE 338
Y+ MLC+E A + +L+ GE
Sbjct: 241 --YQKMLCLETARIHH--LLEFGE 260
>pdb|3K25|A Chain A, Crystal Structure Of Slr1438 Protein From Synechocystis
Sp. Pcc 6803, Northeast Structural Genomics Consortium
Target Sgr112
pdb|3K25|B Chain B, Crystal Structure Of Slr1438 Protein From Synechocystis
Sp. Pcc 6803, Northeast Structural Genomics Consortium
Target Sgr112
Length = 289
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 58/129 (44%), Gaps = 21/129 (16%)
Query: 89 GGQVISWKNEYGEELLFLSSKATFTHPK-PIRGGIPICFP--------QFANHGS---LE 136
GG V W + G+ +L+ + F P +RGGIPI FP QF + G L+
Sbjct: 32 GGLVTEWTVQ-GQPILYFD-RERFQDPSLSVRGGIPILFPICGNLPQDQFNHAGKSYRLK 89
Query: 137 KHGFARSRVWSIDPDPPPFSANSSSQACVDLILKHSEEEVKIWPHRYEFRLRITLGPGGD 196
+HGFAR W + + A +DL L H++ ++ +P +E L G
Sbjct: 90 QHGFARDLPWEV------IGQQTQDNARLDLRLSHNDATLEAFPFAFELVFSYQLQ-GHS 142
Query: 197 LMLTSRIRN 205
L + RI N
Sbjct: 143 LRIEQRIAN 151
>pdb|1G8X|A Chain A, Structure Of A Genetically Engineered Molecular Motor
pdb|1G8X|B Chain B, Structure Of A Genetically Engineered Molecular Motor
Length = 1010
Score = 35.4 bits (80), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 61/288 (21%), Positives = 106/288 (36%), Gaps = 46/288 (15%)
Query: 89 GGQVISWKNEYGEELLFLSSKATFTHPKPIRGGIP------------ICFPQFANHGSLE 136
G I+ +Y E+L L + T+P +R IP + Q +G LE
Sbjct: 624 GANFITVAAQYKEQLASLMATLETTNPHFVRCIIPNNKQLPAKLEDKVVLDQLRCNGVLE 683
Query: 137 -----KHGFAR--------SRVWSIDPDPPPFSANSSSQACVDLILKHSEEEVKIWPHRY 183
+ GF R + + P+ P + +S Q D +LKH + I P +Y
Sbjct: 684 GIRITRKGFPNRIIYADFVKRYYLLAPNVPRDAEDS--QKATDAVLKH----LNIDPEQY 737
Query: 184 EFRLRITLGPGGDLMLTSRIRNTNTDGKSXXXXXXXXXXXXVSDISEVRVEGLETLDYLD 243
F + G L R + V I++ + LE+ D+ D
Sbjct: 738 RFGITKIFFRAGQLARIEEAREQRLGSEQTKSDYLKRANELVQWINDKQA-SLESRDFGD 796
Query: 244 NLKDKERF---------TEQGDAITFESEVDKVYLSTPTKIAILDHERKRTFVLRKDGLP 294
+++ + F TE+ SE++ +Y S TK+ ++ ++ FV P
Sbjct: 797 SIESVQSFMNAHKEYKKTEKPPKGQEVSELEAIYNSLQTKLRLI---KREPFVAPAGLTP 853
Query: 295 DAV--VWNPWDKKAKAMADFGDDEYKHMLCVEAACVEKPIILKPGEEW 340
+ + W+ +K + A+ E K + + ILK E W
Sbjct: 854 NEIDSTWSALEKAEQEHAEALRIELKRQKKIAVLLQKYNRILKKLENW 901
>pdb|3DCD|A Chain A, X-Ray Structure Of The Galactose Mutarotase Related Enzyme
Q5fkd7 From Lactobacillus Acidophilus At The Resolution
1.9a. Northeast Structural Genomics Consortium Target
Lar33.
pdb|3DCD|B Chain B, X-Ray Structure Of The Galactose Mutarotase Related Enzyme
Q5fkd7 From Lactobacillus Acidophilus At The Resolution
1.9a. Northeast Structural Genomics Consortium Target
Lar33
Length = 307
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 9/53 (16%)
Query: 135 LEKHGFARSRVWSIDPDPPPFSANSSSQACVDLILKHSEEEVKIWPHRYEFRL 187
L +HGFAR+ F + ++ + +LK +EE K++P ++EFR+
Sbjct: 70 LGQHGFARN---------ADFEVENHTKESITFLLKDNEETRKVYPFKFEFRV 113
>pdb|2EUA|A Chain A, Structure And Mechanism Of Menf, The Menaquinone-Specific
Isochorismate Synthase From Escherichia Coli
pdb|2EUA|B Chain B, Structure And Mechanism Of Menf, The Menaquinone-Specific
Isochorismate Synthase From Escherichia Coli
pdb|3BZM|A Chain A, Crystal Structure Of Open Form Of Menaquinone-Specific
Isochorismate Synthase, Menf
pdb|3BZN|A Chain A, Crystal Structure Of Open Form Of Menaquinone-Specific
Isochorismate Synthase, Menf
Length = 431
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
Query: 282 RKRTFVLRKDGLPDAVVWNPWDKKAKAMADF--GDD--EYKHMLCVEAAC 327
R+R LR + L V NP DK+A+ + ++ DD + ++ML VE C
Sbjct: 244 RRRDKALRTEALAGTVANNPDDKQAQQLGEWLMADDKNQRENMLVVEDIC 293
>pdb|2FHQ|A Chain A, Crystal Structure Of General Stress Protein From
Bacteroides Thetaiotaomicron
pdb|2FHQ|B Chain B, Crystal Structure Of General Stress Protein From
Bacteroides Thetaiotaomicron
Length = 141
Score = 28.5 bits (62), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 233 VEGLETLDYLDNLKDKERFTEQGDAITFESEVDKV 267
+ L+T+D+L N K F E+GD++ EV+ V
Sbjct: 56 ADSLKTIDFLSNPKAGLCFQEKGDSVALXGEVEVV 90
>pdb|3HDB|A Chain A, Crystal Structure Of Aahiv, A Metalloproteinase From Venom
Of Agkistrodon Acutus
Length = 417
Score = 28.5 bits (62), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 147 SIDPDPPPFSANSSSQACVDLILKHSEEEVKIWP 180
SI P+P F +N S C D I+ H+ E + P
Sbjct: 168 SISPEPSKFFSNCSYIQCWDFIMNHNPECIDNEP 201
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,354,804
Number of Sequences: 62578
Number of extensions: 419747
Number of successful extensions: 771
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 749
Number of HSP's gapped (non-prelim): 12
length of query: 367
length of database: 14,973,337
effective HSP length: 100
effective length of query: 267
effective length of database: 8,715,537
effective search space: 2327048379
effective search space used: 2327048379
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)