Query 017699
Match_columns 367
No_of_seqs 138 out of 1234
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 02:40:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017699.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017699hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1594 Uncharacterized enzyme 100.0 4.2E-65 9.1E-70 463.8 30.3 293 60-357 13-305 (305)
2 cd09020 D-hex-6-P-epi_like D-h 100.0 4.5E-57 9.8E-62 429.6 29.3 265 73-347 2-269 (269)
3 COG0676 Uncharacterized enzyme 100.0 2.9E-46 6.3E-51 346.2 22.4 262 67-349 21-285 (287)
4 cd09025 Aldose_epim_Slr1438 Al 100.0 3.7E-44 8.1E-49 341.3 27.3 248 70-346 1-270 (271)
5 cd09024 Aldose_epim_lacX Aldos 100.0 2.4E-39 5.2E-44 310.8 28.2 244 73-348 1-288 (288)
6 cd09021 Aldose_epim_Ec_YphB al 100.0 2.3E-36 5E-41 287.7 24.6 230 84-347 4-273 (273)
7 PF01263 Aldose_epim: Aldose 1 100.0 5.9E-35 1.3E-39 280.3 22.5 259 71-347 1-300 (300)
8 PRK15172 putative aldose-1-epi 100.0 1.2E-33 2.6E-38 272.8 31.5 248 69-350 9-299 (300)
9 cd01081 Aldose_epim aldose 1-e 100.0 4.5E-34 9.8E-39 271.2 26.0 238 82-344 2-283 (284)
10 cd09022 Aldose_epim_Ec_YihR Al 100.0 2.8E-32 6E-37 261.1 27.0 236 81-346 1-284 (284)
11 cd09019 galactose_mutarotase_l 100.0 5.7E-31 1.2E-35 257.0 27.4 255 73-348 2-326 (326)
12 COG2017 GalM Galactose mutarot 100.0 1.4E-30 3E-35 252.3 27.1 252 67-350 9-307 (308)
13 PLN00194 aldose 1-epimerase; P 100.0 6.6E-28 1.4E-32 236.3 30.7 264 69-349 8-336 (337)
14 TIGR02636 galM_Leloir galactos 100.0 3.3E-28 7.1E-33 238.3 28.1 261 69-348 3-334 (335)
15 PRK11055 galM galactose-1-epim 100.0 4.9E-27 1.1E-31 230.4 29.3 263 68-349 7-340 (342)
16 PTZ00485 aldolase 1-epimerase; 99.9 5.9E-24 1.3E-28 210.0 30.3 273 67-356 10-374 (376)
17 KOG1604 Predicted mutarotase [ 99.8 5.2E-19 1.1E-23 167.8 25.1 267 63-350 13-351 (353)
18 cd09023 Aldose_epim_Ec_c4013 A 99.8 1.5E-18 3.2E-23 166.5 18.3 237 85-344 5-283 (284)
19 PF14486 DUF4432: Domain of un 99.3 2.6E-10 5.5E-15 110.4 17.4 258 68-348 2-302 (302)
20 cd09269 deoxyribose_mutarotase 99.1 1.1E-09 2.5E-14 105.4 15.9 186 134-346 61-292 (293)
21 PF14315 DUF4380: Domain of un 97.5 0.0051 1.1E-07 58.9 15.5 127 70-216 4-143 (274)
22 TIGR03593 yidC_nterm membrane 93.8 2.3 5E-05 42.2 15.2 118 70-214 73-203 (366)
23 PF14849 YidC_periplas: YidC p 90.1 3.3 7.1E-05 39.0 10.7 122 72-215 1-131 (270)
24 PRK01318 membrane protein inse 88.6 10 0.00023 39.7 14.0 120 72-215 40-170 (521)
25 PF09095 DUF1926: Domain of un 88.1 8.7 0.00019 36.9 12.1 226 66-346 3-278 (278)
26 COG0832 UreB Urea amidohydrola 52.2 18 0.00038 29.3 3.2 30 188-220 12-41 (106)
27 PF02929 Bgal_small_N: Beta ga 47.9 1.1E+02 0.0023 29.2 8.6 115 74-206 1-121 (276)
28 PF05506 DUF756: Domain of unk 46.1 52 0.0011 25.5 5.1 38 180-222 6-43 (89)
29 PRK13203 ureB urease subunit b 43.4 32 0.0007 27.9 3.5 30 189-223 13-42 (102)
30 PF00699 Urease_beta: Urease b 43.1 31 0.00067 27.9 3.3 31 189-224 12-42 (100)
31 cd00407 Urease_beta Urease bet 42.9 33 0.00071 27.9 3.5 30 189-223 13-42 (101)
32 TIGR00192 urease_beta urease, 42.6 35 0.00076 27.7 3.6 30 189-223 13-42 (101)
33 PRK13201 ureB urease subunit b 36.0 47 0.001 28.3 3.5 29 189-220 13-41 (136)
34 PRK13202 ureB urease subunit b 35.4 53 0.0012 26.7 3.6 30 189-223 13-43 (104)
35 PRK13205 ureB urease subunit b 34.7 49 0.0011 28.8 3.5 30 189-223 13-42 (162)
36 PRK13204 ureB urease subunit b 33.6 53 0.0011 28.7 3.5 42 177-223 23-65 (159)
37 PRK13198 ureB urease subunit b 33.5 53 0.0011 28.6 3.5 41 177-220 28-69 (158)
38 KOG4701 Chitinase [Cell wall/m 31.9 26 0.00057 35.1 1.6 48 10-57 457-504 (568)
39 PRK10340 ebgA cryptic beta-D-g 26.8 9.6E+02 0.021 27.5 13.0 114 72-206 725-843 (1021)
40 KOG2130 Phosphatidylserine-spe 24.3 37 0.0008 33.3 1.1 28 21-48 341-368 (407)
41 PRK13192 bifunctional urease s 23.2 90 0.0019 28.6 3.3 41 178-223 110-151 (208)
42 cd01615 CIDE_N CIDE_N domain, 23.1 25 0.00054 27.2 -0.2 21 319-341 57-77 (78)
43 PF12690 BsuPI: Intracellular 21.8 1.2E+02 0.0026 23.4 3.4 19 197-217 2-20 (82)
44 cd06535 CIDE_N_CAD CIDE_N doma 21.2 31 0.00066 26.7 -0.1 22 319-342 56-77 (77)
45 PRK13986 urease subunit alpha; 20.4 1.1E+02 0.0023 28.5 3.2 41 178-223 106-147 (225)
No 1
>KOG1594 consensus Uncharacterized enzymes related to aldose 1-epimerase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.2e-65 Score=463.83 Aligned_cols=293 Identities=72% Similarity=1.262 Sum_probs=277.6
Q ss_pred eeEEEeccCCeeEEEEEeCCceEEEEEcCCeEEEEEEeCCCeEEEecCCccccCCCCCcccCcceecccCCCCCCCCCCc
Q 017699 60 FVEHCKGVNGLEKVVLREVRGCSAEIYLYGGQVISWKNEYGEELLFLSSKATFTHPKPIRGGIPICFPQFANHGSLEKHG 139 (367)
Q Consensus 60 ~~~~~~~~~g~~~v~L~n~~g~~a~V~~~Ga~l~s~~~~~g~evL~~~~~~~~~~~~~~rgG~PvlFP~~Gr~~~l~~HG 139 (367)
.+.++.+.+|++.+.|+++++.+|+|+++||+|+||+...|+|+||.+..+.|+..+|||||+|+|||+||..+.+++||
T Consensus 13 ~~~~~k~~~g~~~ivL~~p~g~taev~L~Gg~V~SWK~~~geElLf~S~kA~f~ppKpIRGGIP~~FPQFG~~g~l~qHG 92 (305)
T KOG1594|consen 13 PVELAKGRNGLDKIVLTDPRGSTAEVYLYGGQVVSWKNENGEELLFVSTKAIFKPPKPIRGGIPICFPQFGNFGSLPQHG 92 (305)
T ss_pred cceeecccCCCceEEEeCCCCCeEEEEEeccEEEEeecCCCceeEEechhhhcCCCCcccCCcceEeeccCCCCcccccc
Confidence 47788999999999999999999999999999999999888999999999999999999999999999999989999999
Q ss_pred ccccCCeEEecCCCCCCCCCCCceEEEEEeccChhhhccCCeeeEEEEEEEEcCCCeEEEEEEEEeCCCCCceEEEeeec
Q 017699 140 FARSRVWSIDPDPPPFSANSSSQACVDLILKHSEEEVKIWPHRYEFRLRITLGPGGDLMLTSRIRNTNTDGKSFAFTFAY 219 (367)
Q Consensus 140 far~~~W~v~~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~~ytL~~~~~L~i~~~v~N~n~~~~p~pf~~g~ 219 (367)
|||++.|.++....+++ .-+.+.|.|.|.+++++++.|||.|++++++.|.+ +.|+++.+|+|+ +++|+.|++++
T Consensus 93 FaRn~~W~v~~~p~~lp--~~~~a~Vdl~Lk~~~~~~kiWp~~Fe~~lrv~l~~-g~Lt~~~rV~Nt--d~KpFsF~~al 167 (305)
T KOG1594|consen 93 FARNRFWEVENNPPPLP--SLGKATVDLILKSSEDDLKIWPHSFELRLRVSLGD-GELTLTSRVRNT--DSKPFSFSFAL 167 (305)
T ss_pred cccceeeEeccCCCCCC--cCCceeEEEEecCChhhhhhCCcceEEEEEEEEcC-CceEEEEEeecC--CCCceEEEeEe
Confidence 99999999998764332 12358999999999999999999999999999997 899999999999 99999999999
Q ss_pred cceeecCCcceEEEEccCCccccccCCccccccccCceeecCCCcCeeEecCCCeEEEEeCCCCcEEEEEEcCCCeEEEE
Q 017699 220 HTYFAVSDISEVRVEGLETLDYLDNLKDKERFTEQGDAITFESEVDKVYLSTPTKIAILDHERKRTFVLRKDGLPDAVVW 299 (367)
Q Consensus 220 HpYF~~~~~~~~~i~gl~~~~~ld~~~~~~~~~~~~~~~~~~~~~D~vy~~~~~~~~l~d~~~g~~l~v~~~~~~~~vvw 299 (367)
|+||+++++.+++|+||++++|+|++....+++++++.++|++++|++|.+++.+..|.|.+.+++|.+..+|+|+.|||
T Consensus 168 HtYf~vsdisevrveGL~tldylD~~~~~~~~tE~~davTF~~e~DrvYl~tp~e~aI~dh~~krti~l~k~g~pDaVVW 247 (305)
T KOG1594|consen 168 HTYFRVSDISEVRVEGLETLDYLDNLKNRERFTEQRDAVTFNSEVDRVYLNTPTELAIFDHEKKRTIVLKKEGLPDAVVW 247 (305)
T ss_pred eeeEeecccceEEEeccccccccccccchhhccccCceEeeccceeeEEecCCceEEEEEeccccEEEEeccCCCceEEe
Confidence 99999999999999999999999998887888888899999999999999999999999999999999999999999999
Q ss_pred CCCccchhhhccCCCCCccceEEEccCccCCCeEeCCCCEEEEEEEEEEEecCCCCCC
Q 017699 300 NPWDKKAKAMADFGDDEYKHMLCVEAACVEKPIILKPGEEWRGRQEISAVPSSYCSGQ 357 (367)
Q Consensus 300 ~P~~~~~~~~~d~~~~~~~~fvCIEP~~~~~~~~L~PGe~~~~~~~i~~~~~~~~~~~ 357 (367)
|||.++++.|+||++++|++|+|||++.++.+++|+|||+|++.+.+++.+.+|||||
T Consensus 248 NPW~kksk~maD~gde~Y~~mlCVe~a~v~~pI~L~PG~eW~g~q~Lsiv~s~~~s~q 305 (305)
T KOG1594|consen 248 NPWDKKSKTMADFGDEDYKHMLCVESAAVESPITLKPGEEWKGRQLLSIVPSSYCSGQ 305 (305)
T ss_pred ChhHhhhhhhhhccccccceeEEecccccCCceeecCCccceeEEEEEEeecccccCC
Confidence 9999999999999999999999999999999999999999999999999999999998
No 2
>cd09020 D-hex-6-P-epi_like D-hexose-6-phosphate epimerase-like. D-Hexose-6-phosphate epimerase Ymr099c from Saccharomyces cerevisiae belongs to the large superfamily of aldose-1-epimerases. Its active site is very similar to the catalytic site of galactose mutarotase, the best studied member of the superfamily. It also contains the conserved glutamate and histidine residues that have been shown in galactose mutarotase to be critical for catalysis, the glutamate serving as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen. In addition Ymr099c contains 2 conserved arginine residues which are involved in phosphate binding, and exhibits hexose-6-phosphate mutarotase activity on glucose-6-P, galactose-6-P and mannose-6-P.
Probab=100.00 E-value=4.5e-57 Score=429.62 Aligned_cols=265 Identities=51% Similarity=0.851 Sum_probs=239.9
Q ss_pred EEEEeCCceEEEEEcCCeEEEEEEeCCCeEEEecCCccccCCCCCcccCcceecccCCCCC---CCCCCcccccCCeEEe
Q 017699 73 VVLREVRGCSAEIYLYGGQVISWKNEYGEELLFLSSKATFTHPKPIRGGIPICFPQFANHG---SLEKHGFARSRVWSID 149 (367)
Q Consensus 73 v~L~n~~g~~a~V~~~Ga~l~s~~~~~g~evL~~~~~~~~~~~~~~rgG~PvlFP~~Gr~~---~l~~HGfar~~~W~v~ 149 (367)
++|+|+ +++|+|.++||+|+||+.++++|+||.++.+.|+..+++|||+|+|||||||+. .+++|||||+..|+|.
T Consensus 2 i~i~~~-~~~a~i~~~Ga~l~s~~~~~~~~~L~~s~~~~~~~~~~irgGiPvlfP~~g~~~~~~~~~~HGfaR~~~W~l~ 80 (269)
T cd09020 2 IVLDHP-GASAEIALQGAQVLSWKPKGGQDLLWLSPQAPFDGGKAIRGGIPVCWPWFGPHGPNADLPAHGFARTRLWELL 80 (269)
T ss_pred EEEeCC-CceEEEECCCcEEEEEeCCCCceeEEECCccccCCCCcccCCCeEeeeccCCCCCCCCCCcceeeecCceEEe
Confidence 678998 599999999999999999666999999999999999999999999999999986 6899999999999999
Q ss_pred cCCCCCCCCCCCceEEEEEeccChhhhccCCeeeEEEEEEEEcCCCeEEEEEEEEeCCCCCceEEEeeeccceeecCCcc
Q 017699 150 PDPPPFSANSSSQACVDLILKHSEEEVKIWPHRYEFRLRITLGPGGDLMLTSRIRNTNTDGKSFAFTFAYHTYFAVSDIS 229 (367)
Q Consensus 150 ~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~~ytL~~~~~L~i~~~v~N~n~~~~p~pf~~g~HpYF~~~~~~ 229 (367)
+.. ++++...|+|.+..+++++++|||+|+++++|+|.+ ++|+++++|+|+ ++++|||++|+||||++++..
T Consensus 81 ~~~-----~~~~~~~l~l~l~~~~~~~~~~P~~f~l~~~~~L~~-~~L~~~l~v~N~--g~~~~p~~~g~HpYf~v~d~~ 152 (269)
T cd09020 81 EVS-----EDEDGVTVSLELDDTDETRAIWPHAFELRLTVTLGF-DTLELELTVTNT--GDKPFSFTAALHTYFRVSDIE 152 (269)
T ss_pred eee-----cCCCceEEEEEeCCChhhhhcCCCceEEEEEEEEcC-CcEEEEEEEECC--CCCCeEehhccCeeEecCCcc
Confidence 875 233467889999888888999999999999999998 899999999999 999999999999999999999
Q ss_pred eEEEEccCCccccccCCccccccccCceeecCCCcCeeEecCCCeEEEEeCCCCcEEEEEEcCCCeEEEECCCccchhhh
Q 017699 230 EVRVEGLETLDYLDNLKDKERFTEQGDAITFESEVDKVYLSTPTKIAILDHERKRTFVLRKDGLPDAVVWNPWDKKAKAM 309 (367)
Q Consensus 230 ~~~i~gl~~~~~ld~~~~~~~~~~~~~~~~~~~~~D~vy~~~~~~~~l~d~~~g~~l~v~~~~~~~~vvw~P~~~~~~~~ 309 (367)
+++|.|++++.|+|++...... ...+.+.+..++|++|.++++.++|.|+..+++|.|+.++++++||||||.+++++|
T Consensus 153 ~~~v~gl~~~~y~d~~~~~~~~-~~~~~~~~~~~~Drvy~~~~~~~~i~d~~~~~~i~i~~~~~~~~VVWNP~~~~~~~~ 231 (269)
T cd09020 153 QVRVEGLEGATYLDKLTDQREK-VQGGAVTFDGEVDRVYLNTPAPLTIDDPAWGRRIRIEKSGSPSAVVWNPWIEKAARM 231 (269)
T ss_pred ccEEeCCCCCceEEcCCCcccc-ccCCceEECCccceEEeCCCCCEEEEcCCCCcEEEEEecCCCCEEEeCcchhhcccc
Confidence 9999999999999987543222 224578888999999998887899999988999999998999999999999999999
Q ss_pred ccCCCCCccceEEEccCccCCCeEeCCCCEEEEEEEEE
Q 017699 310 ADFGDDEYKHMLCVEAACVEKPIILKPGEEWRGRQEIS 347 (367)
Q Consensus 310 ~d~~~~~~~~fvCIEP~~~~~~~~L~PGe~~~~~~~i~ 347 (367)
.||++++|++||||||++..++++|+|||+|+..++|+
T Consensus 232 ~d~~~~~~~~fvCvEp~~~~~~~~L~pG~~~~~~~~i~ 269 (269)
T cd09020 232 ADFPDDGYRRMVCVEAANVADPVTLAPGESHTLSQTIS 269 (269)
T ss_pred ccCCccccceEEEECeeecCCCEEECCCCCEEEEEEEC
Confidence 99999999999999999988899999999999999874
No 3
>COG0676 Uncharacterized enzymes related to aldose 1-epimerase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.9e-46 Score=346.25 Aligned_cols=262 Identities=37% Similarity=0.588 Sum_probs=223.5
Q ss_pred cCCeeEEEEEeCCceEEEEEcCCeEEEEEEeCCCeEEEecCCccccCCCCCcccCcceecccCCCCCC--CCCCcccccC
Q 017699 67 VNGLEKVVLREVRGCSAEIYLYGGQVISWKNEYGEELLFLSSKATFTHPKPIRGGIPICFPQFANHGS--LEKHGFARSR 144 (367)
Q Consensus 67 ~~g~~~v~L~n~~g~~a~V~~~Ga~l~s~~~~~g~evL~~~~~~~~~~~~~~rgG~PvlFP~~Gr~~~--l~~HGfar~~ 144 (367)
++..+.+.+.|. ..+|.|+++||+|+||+++++.|+||.++.+.|+..++||||+||||||||+..+ +|.|||||++
T Consensus 21 ~~~~~~~~~~h~-~~~a~islqGAqLLs~qP~ge~evLWLS~~~p~~~g~aIRGGIPICwPWFG~~~~~~~PaHG~AR~~ 99 (287)
T COG0676 21 LDQLPLIVVDHP-LGSAAISLQGAQLLSWQPKGEEEVLWLSSNAPFKGGAAIRGGIPICWPWFGPLAQQGLPAHGFARNR 99 (287)
T ss_pred eeccCceEeecc-cceeEEecCCceEEEecCCCCCceEEecccCccCCCCcccCCCcEEEeccCccCCCCCCccchhhcC
Confidence 345778889998 4999999999999999997677999999999999999999999999999999875 7999999999
Q ss_pred CeEEecCCCCCCCCCCCceEEEEEeccChhhhccCCeeeEEEEEEEEcCCCeEEEEEEEEeCCCCCceEEEeeeccceee
Q 017699 145 VWSIDPDPPPFSANSSSQACVDLILKHSEEEVKIWPHRYEFRLRITLGPGGDLMLTSRIRNTNTDGKSFAFTFAYHTYFA 224 (367)
Q Consensus 145 ~W~v~~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~~ytL~~~~~L~i~~~v~N~n~~~~p~pf~~g~HpYF~ 224 (367)
+|++.+.. ++++.+.|+|.|..+++ |+.|+++++++|.+ +|+++++..|+ .+ |+.++||||+
T Consensus 100 ~W~l~~~~-----~~~~~v~v~f~L~~~~~-----p~~~~lr~~~~~g~--~le~~l~~~~~--~s----~~~AlHtYF~ 161 (287)
T COG0676 100 PWKLLEHD-----EDEDGVRVTFGLDLEDE-----PHDFTLRLTFRFGE--TLELELESYGE--ES----FQAALHTYFR 161 (287)
T ss_pred ceeeeehh-----cccCceEEEEEeCCCcc-----ccceEEEEEeeccc--eEEEEEEecCh--hH----HHHhhcceEE
Confidence 99999987 35567788898886553 99999999999995 58888887766 54 9999999999
Q ss_pred cCCcceEEEEccCCccccccCCccccccccCceeecCCCcCeeEecCCCeEEEEeCCCCcEEEEEEcCCCeEEEECCCcc
Q 017699 225 VSDISEVRVEGLETLDYLDNLKDKERFTEQGDAITFESEVDKVYLSTPTKIAILDHERKRTFVLRKDGLPDAVVWNPWDK 304 (367)
Q Consensus 225 ~~~~~~~~i~gl~~~~~ld~~~~~~~~~~~~~~~~~~~~~D~vy~~~~~~~~l~d~~~g~~l~v~~~~~~~~vvw~P~~~ 304 (367)
++|++++.|+||++..+.+.+...+. ....+..++++..|++|.+.++...|.|+...|+|+|...+...+|+||||.+
T Consensus 162 VgDi~qv~V~GL~~~~~~~~~~~~~~-v~~~g~~~~~~~~DriY~~~~~~~~I~D~~~~R~I~l~~~~~~~~VvWNP~~~ 240 (287)
T COG0676 162 VGDIEQVEVSGLGGVCIDKVLNAEEE-VTQHGIVTFPGETDRIYLNPEPCSVIVDPALNRIITLEHQGHSSTVVWNPGHA 240 (287)
T ss_pred ecchhheEeccCCceehhhhhhceee-ccCCCceeeCCCccEEEEcCCCceEEecCcceEEEEEEecCCCCeEEECCCcc
Confidence 99999999999998776655443221 12234578899999999998888899999989999999999999999999999
Q ss_pred chhhhccCCCCCccceEEEccCccC-CCeEeCCCCEEEEEEEEEEE
Q 017699 305 KAKAMADFGDDEYKHMLCVEAACVE-KPIILKPGEEWRGRQEISAV 349 (367)
Q Consensus 305 ~~~~~~d~~~~~~~~fvCIEP~~~~-~~~~L~PGe~~~~~~~i~~~ 349 (367)
++..|.||.+++|+.||||||+... ....++|+ .++..+.|++.
T Consensus 241 ~s~~M~d~~d~gyq~mlCvEta~~~~~l~~~~~~-~~~l~~~i~~~ 285 (287)
T COG0676 241 KSSSMADMPDDGYQTMLCVETARVGPDLKVGEPG-PVRLALKISVA 285 (287)
T ss_pred ccccccccccccceEEEEEeecccCcchhhcCCc-ceeeeeeeecc
Confidence 9999999999999999999999874 45666676 66666666554
No 4
>cd09025 Aldose_epim_Slr1438 Aldose 1-epimerase, similar to Synechocystis Slr1438. Proteins similar to Synechocystis Slr1438 are uncharacterized members of aldose-1-epimerase superfamily. Aldose 1-epimerases or mutarotases are key enzymes of carbohydrate metabolism, catalyzing the interconversion of the alpha- and beta-anomers of hexose sugars such as glucose and galactose. This interconversion is an important step that allows anomer specific metabolic conversion of sugars. Studies of the catalytic mechanism of the best known member of the family, galactose mutarotase, have shown a glutamate and a histidine residue to be critical for catalysis; the glutamate serves as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen.
Probab=100.00 E-value=3.7e-44 Score=341.29 Aligned_cols=248 Identities=28% Similarity=0.492 Sum_probs=205.4
Q ss_pred eeEEEEEeCC-ceEEEEE-cCCeEEEEEEeCCCeEEEecCCccccCCCCCcccCcceecccCCCCC-----------CCC
Q 017699 70 LEKVVLREVR-GCSAEIY-LYGGQVISWKNEYGEELLFLSSKATFTHPKPIRGGIPICFPQFANHG-----------SLE 136 (367)
Q Consensus 70 ~~~v~L~n~~-g~~a~V~-~~Ga~l~s~~~~~g~evL~~~~~~~~~~~~~~rgG~PvlFP~~Gr~~-----------~l~ 136 (367)
++.++|+++. +++++|. .+||+|++|+. +|.|+||+++.+.++..+++|||+|+||||+||+. +++
T Consensus 1 ~~~~~l~~~~~~~~~~v~p~~Ga~l~s~~~-~g~~~l~~~~~~~~~~~~~~~gG~p~l~P~~gri~~g~~~~~g~~~~lp 79 (271)
T cd09025 1 YPTYELSDEEAGSRLRVVPERGGLITRWTV-QGRELLYLDEERFADPAKSVRGGIPILFPICGNLPDDGYPLAGQEYTLK 79 (271)
T ss_pred CcEEEEEcCCCceEEEEecccCCEEEEEec-CCEEEEecCChHHhccccccCCCCcEEECccCCCCCCeEEECCEEEecc
Confidence 3678899984 4777655 79999999998 57999999998888888899999999999999974 579
Q ss_pred CCcccccCCeEEecCCCCCCCCCCCceEEEEEeccChhhhccCCeeeEEEEEEEEcCCCeEEEEEEEEeCCCCCceEEEe
Q 017699 137 KHGFARSRVWSIDPDPPPFSANSSSQACVDLILKHSEEEVKIWPHRYEFRLRITLGPGGDLMLTSRIRNTNTDGKSFAFT 216 (367)
Q Consensus 137 ~HGfar~~~W~v~~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~~ytL~~~~~L~i~~~v~N~n~~~~p~pf~ 216 (367)
+|||+|++.|++++.. +...|+|.+..+++++.+|||+|+++++|+|.+ ++|+++++++|+ ++++|||+
T Consensus 80 ~HGf~r~~~W~v~~~~--------~~~~v~l~l~~~~~~~~~~P~~~~~~~~y~L~~-~~L~i~~~v~N~--~~~~~p~~ 148 (271)
T cd09025 80 QHGFARDLPWEVELLG--------DGAGLTLTLRDNEATRAVYPFDFELELTYRLAG-NTLEIAQRVHNL--GDQPMPFS 148 (271)
T ss_pred CcccccCCCEEEEecC--------CCcEEEEEEeCCHHHHhhCCceEEEEEEEEEeC-CEEEEEEEEEEC--CCCcEEEE
Confidence 9999999999998652 245788999887777899999999999999997 899999999999 99999999
Q ss_pred eeccceeecCCcceEEEEccCCccccccCCccccccccCceeecCCCcCeeEecCCCeEEEEeCCCCcEEEEEEc-CCCe
Q 017699 217 FAYHTYFAVSDISEVRVEGLETLDYLDNLKDKERFTEQGDAITFESEVDKVYLSTPTKIAILDHERKRTFVLRKD-GLPD 295 (367)
Q Consensus 217 ~g~HpYF~~~~~~~~~i~gl~~~~~ld~~~~~~~~~~~~~~~~~~~~~D~vy~~~~~~~~l~d~~~g~~l~v~~~-~~~~ 295 (367)
+|+||||++++.++++|.++. ..+.|.......... .....+..++|++|.+++ .++|.+++.+++|.|..+ ++++
T Consensus 149 ~g~HpYF~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~D~~y~~~~-~~~l~~~~~~~~i~l~~~~~~~~ 225 (271)
T cd09025 149 FGFHPYFAVPDKAKLSLDLPP-TRCFDQKTDEEANTP-GQFDETEEGVDLLFRPLG-PASLTDGARGLKITLDHDEPFSN 225 (271)
T ss_pred EecCceeeCCchhccEEEcCH-HHHhhhccCCccCCc-ccccccccccchhhccCC-ceEEEecCCCEEEEEecCCCcce
Confidence 999999999988888888764 556665432211111 123334567999999875 789999877899999887 5899
Q ss_pred EEEECCCccchhhhccCCCCCccceEEEccCcc--------CCCeEeCCCCEEEEEEEE
Q 017699 296 AVVWNPWDKKAKAMADFGDDEYKHMLCVEAACV--------EKPIILKPGEEWRGRQEI 346 (367)
Q Consensus 296 ~vvw~P~~~~~~~~~d~~~~~~~~fvCIEP~~~--------~~~~~L~PGe~~~~~~~i 346 (367)
+|||||. +++|||||||+. .++++|+|||+++++++|
T Consensus 226 ~vvw~p~--------------~~~~vCvEp~t~~~nA~n~~~~~~~L~PGe~~~~~~~i 270 (271)
T cd09025 226 LVVWTDK--------------GKDFVCLEPWTGPRNALNTGERLLLLPPGETEEASVRI 270 (271)
T ss_pred EEEecCC--------------CCcEEEEecCCCCccccCcCCccEEECCCCEEEEEEEE
Confidence 9999984 257999999862 477999999999999887
No 5
>cd09024 Aldose_epim_lacX Aldose 1-epimerase, similar to Lactococcus lactis lacX. Proteins similar to Lactococcus lactis lacX are uncharacterized members of aldose-1-epimerase superfamily. Aldose 1-epimerases or mutarotases are key enzymes of carbohydrate metabolism, catalyzing the interconversion of the alpha- and beta-anomers of hexose sugars such as glucose and galactose. This interconversion is an important step that allows anomer specific metabolic conversion of sugars. Studies of the catalytic mechanism of the best known member of the family, galactose mutarotase, have shown a glutamate and a histidine residue to be critical for catalysis; the glutamate serves as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen.
Probab=100.00 E-value=2.4e-39 Score=310.77 Aligned_cols=244 Identities=22% Similarity=0.362 Sum_probs=187.2
Q ss_pred EEEEeCCceEEEEEcCCeEEEEEEeC-CCeEEEecCCccccCCCCCcccCcceecccCCCCC-----------CCCCCcc
Q 017699 73 VVLREVRGCSAEIYLYGGQVISWKNE-YGEELLFLSSKATFTHPKPIRGGIPICFPQFANHG-----------SLEKHGF 140 (367)
Q Consensus 73 v~L~n~~g~~a~V~~~Ga~l~s~~~~-~g~evL~~~~~~~~~~~~~~rgG~PvlFP~~Gr~~-----------~l~~HGf 140 (367)
++|+|++ ++|+|..+||+|+||+.+ +|.|+||+.+.+.|. +++|+||||+||+. +|++|||
T Consensus 1 ~~l~n~~-~~a~v~~~Ga~l~s~~~~~~g~e~l~~~~~~~~~------~~~p~l~P~~gri~~g~~~~~g~~~~l~~HGf 73 (288)
T cd09024 1 ITLENEF-LTVTISEHGAELTSIKDKKTGREYLWQGDPAYWG------RHAPILFPIVGRLKDDTYTIDGKTYPMPQHGF 73 (288)
T ss_pred CEEECCc-EEEEEeccCcEEEEEEeCCCCCEEEeCCChHHcC------CCCCEEEeeccCCCCCeEEECCEEeeccCCCC
Confidence 5799996 999999999999999995 589999999877664 57899999999984 5899999
Q ss_pred cccCCeEEecCCCCCCCCCCCceEEEEEeccChhhhccCCeeeEEEEEEEEcCCCeEEEEEEEEeCCCCCceEEEeeecc
Q 017699 141 ARSRVWSIDPDPPPFSANSSSQACVDLILKHSEEEVKIWPHRYEFRLRITLGPGGDLMLTSRIRNTNTDGKSFAFTFAYH 220 (367)
Q Consensus 141 ar~~~W~v~~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~~ytL~~~~~L~i~~~v~N~n~~~~p~pf~~g~H 220 (367)
+|++.|++.+.. ...|+|++..+++++.+|||+|+++++|+|.+ ++|+++++++|+ ++++|||++|+|
T Consensus 74 ~r~~~w~v~~~~---------~~~v~l~l~~~~~~~~~~P~~~~~~~~y~L~~-~~L~i~~~v~N~--~~~~~p~~~g~H 141 (288)
T cd09024 74 ARDMEFEVVEQS---------DDSVTFELTDNEETLKVYPFDFELRVTYTLEG-NTLKVTYEVKNP--DDKTMPFSIGGH 141 (288)
T ss_pred cccCceEEEEcc---------CCEEEEEEccCcchhhcCCeEEEEEEEEEEeC-CEEEEEEEEEcC--CCCceEEEEeCC
Confidence 999999998764 24788988887767789999999999999997 899999999999 999999999999
Q ss_pred ceeecCCc-----ceEEEE--ccCCccc--cc--c-CCccc-cccccCceeecCCC-c-Cee--EecCC-CeEEEEeCCC
Q 017699 221 TYFAVSDI-----SEVRVE--GLETLDY--LD--N-LKDKE-RFTEQGDAITFESE-V-DKV--YLSTP-TKIAILDHER 282 (367)
Q Consensus 221 pYF~~~~~-----~~~~i~--gl~~~~~--ld--~-~~~~~-~~~~~~~~~~~~~~-~-D~v--y~~~~-~~~~l~d~~~ 282 (367)
|||++++. .++++. ..+.... ++ . ++... ........+.+... + |++ |.++. +.++|.+++.
T Consensus 142 pYF~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~ 221 (288)
T cd09024 142 PAFNCPLDEGEKFEDYYLEFEPKEELERIPLVGPLGLLGEKKPLLLNEGTLPLTHDLFDDDALIFDNLKSREVTLKSKKT 221 (288)
T ss_pred ceEECCCCCCCcccceEEEECCcccceEEecCCccccccccccccCCCCeecCCHHHhcCCEEEEcCCCccEEEEEcCCC
Confidence 99999853 244442 2111111 11 1 11111 00011223444332 2 443 33443 6789988877
Q ss_pred CcEEEEEEcCCCeEEEECCCccchhhhccCCCCCccceEEEccCcc--------------CCCeEeCCCCEEEEEEEEEE
Q 017699 283 KRTFVLRKDGLPDAVVWNPWDKKAKAMADFGDDEYKHMLCVEAACV--------------EKPIILKPGEEWRGRQEISA 348 (367)
Q Consensus 283 g~~l~v~~~~~~~~vvw~P~~~~~~~~~d~~~~~~~~fvCIEP~~~--------------~~~~~L~PGe~~~~~~~i~~ 348 (367)
++.|+|..++|++++||+|..+ ++|||||||++ .++++|+|||+++.+++|++
T Consensus 222 ~~~v~l~~~~~~~l~vwt~~~~-------------~~~iciEP~t~~~da~~~~~~~~~~~gl~~L~PGe~~~~~~~i~~ 288 (288)
T cd09024 222 GHGVTVDFDDFPYLGIWSKPNG-------------APFVCIEPWYGLADSVGFDGDLEDKEGINKLEPGESFEASYSITI 288 (288)
T ss_pred CCEEEEEeCCCCEEEEeCCCCC-------------CCEEEEcCCCCCCCcCCCCccccccCCCEEeCCCCEEEEEEEEEC
Confidence 8899999878999999998421 47999999984 26799999999999999874
No 6
>cd09021 Aldose_epim_Ec_YphB aldose 1-epimerase, similar to Escherichia coli YphB. Proteins similar to Escherichia coli YphB are uncharacterized members of the aldose-1-epimerase superfamily. Aldose 1-epimerases or mutarotases are key enzymes of carbohydrate metabolism, catalyzing the interconversion of the alpha- and beta-anomers of hexose sugars such as glucose and galactose. This interconversion is an important step that allows anomer specific metabolic conversion of sugars. Studies of the catalytic mechanism of the best known member of the family, galactose mutarotase, have shown a glutamate and a histidine residue to be critical for catalysis; the glutamate serves as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen.
Probab=100.00 E-value=2.3e-36 Score=287.71 Aligned_cols=230 Identities=18% Similarity=0.269 Sum_probs=175.4
Q ss_pred EEEcCCeEEEEEEeCC-CeEEEecCCccccCCCCCcccCcceecccCCCCC-----------CC---------CCCcccc
Q 017699 84 EIYLYGGQVISWKNEY-GEELLFLSSKATFTHPKPIRGGIPICFPQFANHG-----------SL---------EKHGFAR 142 (367)
Q Consensus 84 ~V~~~Ga~l~s~~~~~-g~evL~~~~~~~~~~~~~~rgG~PvlFP~~Gr~~-----------~l---------~~HGfar 142 (367)
.|+..||.|++|+..+ +.++||+.+++.. .+.++|+|+||||+||+. ++ ++|||+|
T Consensus 4 ~v~~~Ga~l~sl~~~~~~~~~l~~~~~~~~---~~~~~~~p~LfP~~gRi~~~~~~~~g~~y~l~~n~~~~~~~~HG~ar 80 (273)
T cd09021 4 LAPELGGSIAALTSRGDPTPLLRPADPDAA---DALAMACFPLVPFSNRIRGGRFLFAGREVALPPNTADEPHPLHGDGW 80 (273)
T ss_pred eCCCCCceEEEEEeCCCcceeeecCCcccc---CcccccCceEeccCCcccCCcEeECCEEEecCCCCCCCccCcccchh
Confidence 4678999999999853 4899998876542 234689999999999983 23 7999999
Q ss_pred cCCeEEecCCCCCCCCCCCceEEEEEeccChhhhccCCeeeEEEEEEEEcCCCeEEEEEEEEeCCCCCceEEEeeeccce
Q 017699 143 SRVWSIDPDPPPFSANSSSQACVDLILKHSEEEVKIWPHRYEFRLRITLGPGGDLMLTSRIRNTNTDGKSFAFTFAYHTY 222 (367)
Q Consensus 143 ~~~W~v~~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~~ytL~~~~~L~i~~~v~N~n~~~~p~pf~~g~HpY 222 (367)
++.|+|++.. + ..|+|++...+.. +||+|+++++|+|.+ ++|+++++++|+ ++++|||++|+|||
T Consensus 81 ~~~w~v~~~~-------~--~~v~l~l~~~~~~---~P~~~~~~~~y~L~~-~~L~i~~~~~N~--~~~~~~~~~g~H~Y 145 (273)
T cd09021 81 RRPWQVVAAS-------A--DSAELQLDHEADD---PPWAYRAEQRFHLAG-DGLSITLSVTNR--GDRPMPAGLGFHPY 145 (273)
T ss_pred cCceEEEecc-------C--CeEEEEEecCCCC---CCEeEEEEEEEEEcC-CCEEEEEEEEEC--CCCCceeeeecCcc
Confidence 9999998764 2 3577777654432 499999999999997 899999999999 99999999999999
Q ss_pred eecCCcceEEEEccCCcccc---ccCCcccccccc----Cceeec-CCCcCeeEecCCCeEEEEeCCCCcEEEEEEcC-C
Q 017699 223 FAVSDISEVRVEGLETLDYL---DNLKDKERFTEQ----GDAITF-ESEVDKVYLSTPTKIAILDHERKRTFVLRKDG-L 293 (367)
Q Consensus 223 F~~~~~~~~~i~gl~~~~~l---d~~~~~~~~~~~----~~~~~~-~~~~D~vy~~~~~~~~l~d~~~g~~l~v~~~~-~ 293 (367)
|++++...+++.+.. .+. +.++.+...... .....+ ...+|++|......+.+.++..++.|+|.+++ +
T Consensus 146 F~~~~~~~l~v~~~~--~~~~d~~~lp~~~~~~~~~~df~~~~~l~~~~~D~~f~~~~~~~~l~~~~~~~~i~v~~~~~~ 223 (273)
T cd09021 146 FPRTPDTRLQADADG--VWLEDEDHLPTGLRPHPPDWDFSQPRPLPDRWIDNCFTGWDGAALIWPPERGLALTIEADAPF 223 (273)
T ss_pred EecCCCCEEEEecce--EEecCCCcCCCcccCCCcchhhcCCCcCCcccccccccCCCcceEEecCCCCcEEEEecCCCC
Confidence 999986677775432 111 233222111000 011112 24799999876566888888888999999987 9
Q ss_pred CeEEEECCCccchhhhccCCCCCccceEEEccCcc----------CCCeEeCCCCEEEEEEEEE
Q 017699 294 PDAVVWNPWDKKAKAMADFGDDEYKHMLCVEAACV----------EKPIILKPGEEWRGRQEIS 347 (367)
Q Consensus 294 ~~~vvw~P~~~~~~~~~d~~~~~~~~fvCIEP~~~----------~~~~~L~PGe~~~~~~~i~ 347 (367)
+++|||||+. +.|||||||++ .++++|+|||+++.+++|+
T Consensus 224 ~~~vvwtp~~--------------~~~vCvEP~~~~~da~~~~~~~~~~~L~pge~~~~~~~i~ 273 (273)
T cd09021 224 SHLVVYRPPG--------------EDFFCLEPVSHAPDAHHGPGDPGLRVLAPGESLSLSMRIT 273 (273)
T ss_pred CEEEEEcCCC--------------CCeEEEccccCCCCccCCcCCCCcEEeCCCCcEEEEEEEC
Confidence 9999999852 57999999973 2358999999999998874
No 7
>PF01263 Aldose_epim: Aldose 1-epimerase; InterPro: IPR008183 Aldose 1-epimerase (5.1.3.3 from EC) (mutarotase) is the enzyme responsible for the anomeric interconversion of D-glucose and other aldoses between their alpha- and beta-forms. The sequence of mutarotase from two bacteria, Acinetobacter calcoaceticus and Streptococcus thermophilus is available []. It has also been shown that, on the basis of extensive sequence similarities, a mutarotase domain seems to be present in the C-terminal half of the fungal GAL10 protein which encodes, in the N-terminal part, UDP-glucose 4-epimerase.; GO: 0016853 isomerase activity, 0005975 carbohydrate metabolic process; PDB: 1YGA_A 3DCD_A 2CIQ_A 2CIS_A 2CIR_A 2HTB_C 2HTA_B 3Q1N_A 1NSZ_B 1NSR_B ....
Probab=100.00 E-value=5.9e-35 Score=280.25 Aligned_cols=259 Identities=24% Similarity=0.333 Sum_probs=176.3
Q ss_pred eEEEEEeCCceEEEEEcCCeEEEEEEeCC-CeEEEecCCc--cccCCCCCcccCcceecccCCCC---------------
Q 017699 71 EKVVLREVRGCSAEIYLYGGQVISWKNEY-GEELLFLSSK--ATFTHPKPIRGGIPICFPQFANH--------------- 132 (367)
Q Consensus 71 ~~v~L~n~~g~~a~V~~~Ga~l~s~~~~~-g~evL~~~~~--~~~~~~~~~rgG~PvlFP~~Gr~--------------- 132 (367)
++|+|+|+++++|+|+.+||+|+||+.++ +.|+||..+. .+++.. .+.|+|||+.||+
T Consensus 1 ~~itL~n~~~~~~~i~~~Ga~l~s~~~~~~~~~~l~~~~~~~~~~~~~----~~~~~l~p~~~Ri~~g~~~~~g~~~~l~ 76 (300)
T PF01263_consen 1 DLITLENGNGLSAVIPEYGAELTSLQVKGNGREVLWQPDPADAYWSNS----FGGPILFPWPNRIRNGRFTFDGKPYCLP 76 (300)
T ss_dssp EEEEEEETTSEEEEEETBTTEEEEEEETTTTEESB-B-STHHHHHHST----CTTCEECSCSSEEGGGEEEETTEEEEBS
T ss_pred CEEEEECCCceEEEEeccCcEEEEEEECCCCeEEecCCCChHHhcccc----cceeeeecccceEECCEEEECCEEEEee
Confidence 47999999669999999999999999965 5999999887 344422 3347788888885
Q ss_pred ----CCCCCCcccccCCeEEecCCCCCCCCCCCceEEEEEeccChhhhccCCeeeEEEEEEEEcCCCe-EEEEEEEEeCC
Q 017699 133 ----GSLEKHGFARSRVWSIDPDPPPFSANSSSQACVDLILKHSEEEVKIWPHRYEFRLRITLGPGGD-LMLTSRIRNTN 207 (367)
Q Consensus 133 ----~~l~~HGfar~~~W~v~~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~~ytL~~~~~-L~i~~~v~N~n 207 (367)
+.+++|||+|++.|+|++.. + ...++|.+..+.+...+|||+|+++++|+|.+ ++ |+|+++|+|.
T Consensus 77 ~~~~~~~~~HG~~~~~~w~v~~~~-------~-~~~~~~~~~~~~~~~~~yP~~~~l~~~y~L~~-~~~L~i~~~v~n~- 146 (300)
T PF01263_consen 77 WNGPYPNPIHGFARNKPWEVEEQS-------E-DDSVSFTLVSDPDGEEGYPFDFRLRITYTLDE-NGKLTITYEVTND- 146 (300)
T ss_dssp SSBTTTBEETBSGGGSB-EEEEEE-------E-TTEEEEEEEEEETTHHHSSSEEEEEEEEEEET-TEEEEEEEEEEES-
T ss_pred eccCCCcCCCCCcccccEEEEEec-------c-cceEEEEEEecCccceeeccceeeEEEEEECC-CCeEEEEEEEEec-
Confidence 24689999999999999885 1 13455555442333467999999999999998 78 9999999999
Q ss_pred CCCceEEEeeeccceeecC----CcceEEEEcc----------CCccccccCCccccccccCceeecCC-CcCeeEecCC
Q 017699 208 TDGKSFAFTFAYHTYFAVS----DISEVRVEGL----------ETLDYLDNLKDKERFTEQGDAITFES-EVDKVYLSTP 272 (367)
Q Consensus 208 ~~~~p~pf~~g~HpYF~~~----~~~~~~i~gl----------~~~~~ld~~~~~~~~~~~~~~~~~~~-~~D~vy~~~~ 272 (367)
+ ++|||++|+||||+++ +...+++.+. |++.+.+.......+. ....+.... .+|++|....
T Consensus 147 -~-~~~p~~~g~HpyF~l~~~~~~~~~~~~~~~~~~~~~~~~lptg~~~~~~~~~~d~~-~~~~i~~~~~~~D~~f~~~~ 223 (300)
T PF01263_consen 147 -G-KPMPFNLGFHPYFNLPGEDIDDHQLQVPADEYLELDERLLPTGELAPVKGTPFDFR-QGRPIGDDIPGLDHCFVLDP 223 (300)
T ss_dssp -S-SEEEEBEEEEEEEETTCTSGTTGEEEEEEEEEEEEETTSSEEEEEEETTTCETCGS-SSEEECSSCTCEEEEEEESS
T ss_pred -C-ccEEeeccccceEEcCCcceeeeEEEeccceeeecccccCCceeeecccCCccccc-cCeeecccccccceEEEcCC
Confidence 9 9999999999999999 4455665432 2222111110001111 112222222 6899998765
Q ss_pred -CeEEEEeCCCCcEEEEEEc-CCCeEEEECCCccchhhhccCCCCCccceEEEccCccC-CCeEeCCCCEEEEEEEEE
Q 017699 273 -TKIAILDHERKRTFVLRKD-GLPDAVVWNPWDKKAKAMADFGDDEYKHMLCVEAACVE-KPIILKPGEEWRGRQEIS 347 (367)
Q Consensus 273 -~~~~l~d~~~g~~l~v~~~-~~~~~vvw~P~~~~~~~~~d~~~~~~~~fvCIEP~~~~-~~~~L~PGe~~~~~~~i~ 347 (367)
....+++...+++|.|+.. ++|+++||+|+.+. +.+...+...+.+++|+|+.... ++++|+|||+++.+++|+
T Consensus 224 ~~~~~~~~~~~~~~i~l~~~~~~p~~~v~t~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~pGe~~~~~~~~~ 300 (300)
T PF01263_consen 224 PGRPVIRLRSPGSGISLEFSTSFPWLVVWTPGFDP-KYICIEPIAIEPDFVPDEANNPGKGLIVLAPGESYSFSTRYT 300 (300)
T ss_dssp SSEEEEEEETTTEEEEEEEEESSSEEEEEEETTSS-TEETTCEEECEEESECECCCECCHEGEEEETTSEEEEEEEEE
T ss_pred CccEEEEeecccceEEEEecCCCCcEEEECCCCcc-cccCCcccccCCCeeecccccCCCCCEEECCCCEEEEEEEEC
Confidence 5666666666777777654 88999999986532 00111111113345555555432 479999999999999885
No 8
>PRK15172 putative aldose-1-epimerase; Provisional
Probab=100.00 E-value=1.2e-33 Score=272.80 Aligned_cols=248 Identities=15% Similarity=0.181 Sum_probs=182.8
Q ss_pred CeeEEEEEeCCceEEEEEcCCeEEEEEEeCCCeEEEecCCccccCCCCCcccCcceecccCCCCC-----------CC--
Q 017699 69 GLEKVVLREVRGCSAEIYLYGGQVISWKNEYGEELLFLSSKATFTHPKPIRGGIPICFPQFANHG-----------SL-- 135 (367)
Q Consensus 69 g~~~v~L~n~~g~~a~V~~~Ga~l~s~~~~~g~evL~~~~~~~~~~~~~~rgG~PvlFP~~Gr~~-----------~l-- 135 (367)
....++|+|+. ++|+|..+||.|++|+.. |.++++..+.+.+. +..+| ++||||+||+. +|
T Consensus 9 ~~~~~~l~~~~-~~v~i~~~Ga~i~~l~~~-~~~vv~~~~~~~~~---~~~~g-~~L~P~anRI~~g~f~~~G~~y~L~~ 82 (300)
T PRK15172 9 SGQTISLAAGD-YQATIVTVGAGLAELTFQ-GRHLVIPHKPEEMP---LAHLG-KVLIPWPNRIANGCYRYQGQEYQLPI 82 (300)
T ss_pred CcCEEEEeCCC-EEEEEecCCcEEEEEEEC-CEEEEecCCccccC---ccccc-cEecccCCeecCCEEEECCEEEECCC
Confidence 45679999996 999999999999999984 67888766654442 22344 68999999983 23
Q ss_pred -------CCCcccccCCeEEecCCCCCCCCCCCceEEEEEeccChhhhccCCeeeEEEEEEEEcCCCeEEEEEEEEeCCC
Q 017699 136 -------EKHGFARSRVWSIDPDPPPFSANSSSQACVDLILKHSEEEVKIWPHRYEFRLRITLGPGGDLMLTSRIRNTNT 208 (367)
Q Consensus 136 -------~~HGfar~~~W~v~~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~~ytL~~~~~L~i~~~v~N~n~ 208 (367)
++||+++.+.|+|.+.. + ..++|.+...+ ..+|||+|+++++|+|.++++|+|+++++|.
T Consensus 83 N~~~~~~~lHG~~~~~~W~v~~~~-------~--~~v~l~~~~~~--~~gyP~~~~~~v~y~L~~~~~L~i~~~~~n~-- 149 (300)
T PRK15172 83 NEHVSKAAIHGLLAWRDWQISELT-------A--TSVTLTAFLPP--SYGYPFMLASQVIYSLDAATGLSVEIASQNI-- 149 (300)
T ss_pred CCCCCCcccCCCccCceEEEEEec-------C--CEEEEEEEcCC--CCCCCEEEEEEEEEEEccCCeEEEEEEEEEC--
Confidence 39999999999998664 2 25777776543 3689999999999999854799999999999
Q ss_pred CCceEEEeeeccceeecCC--cceEEEEccCCccccc----cCCccc------cccccCceeecC-CCcCeeEecCCC--
Q 017699 209 DGKSFAFTFAYHTYFAVSD--ISEVRVEGLETLDYLD----NLKDKE------RFTEQGDAITFE-SEVDKVYLSTPT-- 273 (367)
Q Consensus 209 ~~~p~pf~~g~HpYF~~~~--~~~~~i~gl~~~~~ld----~~~~~~------~~~~~~~~~~~~-~~~D~vy~~~~~-- 273 (367)
++++|||++|+||||+++. ..+.+++ ++...++. .++.+. .++- .....+. .++|++|..+.+
T Consensus 150 ~~~~~P~~~g~HpYFnl~~~~~~~~~L~-~~a~~~~~~d~~~iPtg~~~~~~~~~df-~~~~~l~~~~~D~~f~~~~~~~ 227 (300)
T PRK15172 150 GDVPAPYGVGIHPYLTCNLTSVDEYLLQ-LPANQVLAVDEHANPTTLHHVDELDLDF-SQAKKIAATKIDHTFKTANDLW 227 (300)
T ss_pred CCCceeeEEecCceEecCCCChhceEEE-EeCCeEEecCCCcCCCccccCCCCCcCC-CCCeECCCCCccCEEEcCCCce
Confidence 9999999999999999973 4444432 11111111 111110 0000 0111222 369999987654
Q ss_pred eEEEEeCCCCcEEEEEEcCCCeEEEECCCccchhhhccCCCCCccceEEEccCcc--------CCCeEeCCCCEEEEEEE
Q 017699 274 KIAILDHERKRTFVLRKDGLPDAVVWNPWDKKAKAMADFGDDEYKHMLCVEAACV--------EKPIILKPGEEWRGRQE 345 (367)
Q Consensus 274 ~~~l~d~~~g~~l~v~~~~~~~~vvw~P~~~~~~~~~d~~~~~~~~fvCIEP~~~--------~~~~~L~PGe~~~~~~~ 345 (367)
.++|.++.++++|.+.+ +.+.++||+|... .+.+||||||+. .++++|+|||+++.+++
T Consensus 228 ~~~l~~~~~g~~l~~~~-~~~~~~vyt~~~~------------~~~~~ciEp~t~p~dA~n~~~g~~~L~pge~~~~~~~ 294 (300)
T PRK15172 228 EVRITHPQQALSVSLCS-DQPWLQIYSGEKL------------QRQGLAVEPMSCPPNAFNSGIDLLLLEPGKTHRLFFN 294 (300)
T ss_pred EEEEEeCCCCeEEEEEc-CCCEEEEECCCCC------------CCCEEEEeCCCCCCCCCCCCCCCEEECCCCEEEEEEE
Confidence 68999999999999988 6689999997310 147999999985 26799999999999999
Q ss_pred EEEEe
Q 017699 346 ISAVP 350 (367)
Q Consensus 346 i~~~~ 350 (367)
|+..+
T Consensus 295 i~~~~ 299 (300)
T PRK15172 295 IGGQR 299 (300)
T ss_pred EEEEc
Confidence 98764
No 9
>cd01081 Aldose_epim aldose 1-epimerase superfamily. Aldose 1-epimerases or mutarotases are key enzymes of carbohydrate metabolism; they catalyze the interconversion of the alpha- and beta-anomers of hexose sugars such as glucose and galactose. This interconversion is an important step that allows anomer specific metabolic conversion of sugars. Studies of the catalytic mechanism of the best known member of the family, galactose mutarotase, have shown a glutamate and a histidine residue to be critical for catalysis; the glutamate serves as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate and the histidine as the active site acid to protonate the C-5 ring oxygen.
Probab=100.00 E-value=4.5e-34 Score=271.15 Aligned_cols=238 Identities=21% Similarity=0.253 Sum_probs=178.1
Q ss_pred EEEEEcCCeEEEEEEeCCCeEEEecCCccccCCCCCcccCcceecccCCCCC------------------CCCCCccccc
Q 017699 82 SAEIYLYGGQVISWKNEYGEELLFLSSKATFTHPKPIRGGIPICFPQFANHG------------------SLEKHGFARS 143 (367)
Q Consensus 82 ~a~V~~~Ga~l~s~~~~~g~evL~~~~~~~~~~~~~~rgG~PvlFP~~Gr~~------------------~l~~HGfar~ 143 (367)
+|+|..+||.|.+|+.+++.++||..+........+.++|.|+||||+||+. .+++|||+|+
T Consensus 2 ~~~i~~~Ga~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~P~~gri~~g~~~~~g~~~~~~~~~~~~~lHG~~~~ 81 (284)
T cd01081 2 VAVIAPRGANIISLKVKGDVDLLWGYPDAEEYPLAPTGGGGAILFPFANRISDGRYTFDGKQYPLNEDEGGNAIHGFVRN 81 (284)
T ss_pred EEEEeCcCcEEEEEEcCCCceEEecCCChhhhcccCCCCcceEecCcCCcccCCEEeECCEEecCCCCCCCccccCCeec
Confidence 5789999999999998544899998877544334466789999999999973 3689999999
Q ss_pred CCeEEecCCCCCCCCCCCceEEEEEeccChhhhccCCeeeEEEEEEEEcCCCeEEEEEEEEeCCCCCceEEEeeecccee
Q 017699 144 RVWSIDPDPPPFSANSSSQACVDLILKHSEEEVKIWPHRYEFRLRITLGPGGDLMLTSRIRNTNTDGKSFAFTFAYHTYF 223 (367)
Q Consensus 144 ~~W~v~~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~~ytL~~~~~L~i~~~v~N~n~~~~p~pf~~g~HpYF 223 (367)
+.|+++... .++..|+|.+...+.+. +|||+|+++++|+|.+ ++|+|+++|+|+ ++++|||++|+||||
T Consensus 82 ~~w~v~~~~-------~~~~~v~l~~~~~~~~~-~~P~~~~l~~ty~L~~-~~L~i~~~v~N~--~~~~~p~~~g~HpyF 150 (284)
T cd01081 82 LPWRVVATD-------EEEASVTLSYDLNDGPG-GYPFPLELTVTYTLDA-DTLTITFTVTNL--GDEPMPFGLGWHPYF 150 (284)
T ss_pred CcEEEEEec-------cCCcEEEEEEEeCCCCC-CCCEEEEEEEEEEEeC-CeEEEEEEEEeC--CCCCcceeeecCceE
Confidence 999999764 12357888887666544 8999999999999998 899999999999 999999999999999
Q ss_pred ecCCc--ceEEEEccCCccccc----cCCcccccc----ccCceeec-CCCcCeeEecCC-----CeEEEEeCCCCcEEE
Q 017699 224 AVSDI--SEVRVEGLETLDYLD----NLKDKERFT----EQGDAITF-ESEVDKVYLSTP-----TKIAILDHERKRTFV 287 (367)
Q Consensus 224 ~~~~~--~~~~i~gl~~~~~ld----~~~~~~~~~----~~~~~~~~-~~~~D~vy~~~~-----~~~~l~d~~~g~~l~ 287 (367)
+++.. ++++|.... ..+.+ .++.+.... .......+ ...+|++|.... ..++|.++..++.|.
T Consensus 151 ~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~l~~~~~~~~l~ 229 (284)
T cd01081 151 GLPGVAIEDLRLRVPA-SKVLPLDDLLPPTGELEVPGEEDFRLGRPLGGGELDDCFLLLGNDAGTAEARLEDPDSRISVE 229 (284)
T ss_pred ecCCCcccceEEEecC-CEEEecCCccCCCCccCCcccccccCCcCcCCcccccccccCcCCCCeeEEEEECCCCeEEEE
Confidence 99864 566554322 22221 111111000 00111222 246899987543 378899988888888
Q ss_pred EEEcCCCeEEEECCCccchhhhccCCCCCccceEEEccCcc---------CCCeEeC-CCCEEEEEE
Q 017699 288 LRKDGLPDAVVWNPWDKKAKAMADFGDDEYKHMLCVEAACV---------EKPIILK-PGEEWRGRQ 344 (367)
Q Consensus 288 v~~~~~~~~vvw~P~~~~~~~~~d~~~~~~~~fvCIEP~~~---------~~~~~L~-PGe~~~~~~ 344 (367)
+.++. +.++||+|.. ..+.|||||||+. .+.++|+ |||+++.++
T Consensus 230 ~~~~~-~~~~v~t~~~------------~~~~~~ciEP~t~~~da~~~~~~~~~~L~~pge~~~~~~ 283 (284)
T cd01081 230 FETGW-PFWQVYTGDG------------GRRGSVAIEPMTSAPDAFFNNNGGLITLKPPGETRTFSI 283 (284)
T ss_pred EeCCC-CEEEEECCCC------------CcCCEEEEccccCCCCCCCCCCCceEEeCCCCceEEEEe
Confidence 88755 9999999842 1257999999985 1579999 999988664
No 10
>cd09022 Aldose_epim_Ec_YihR Aldose 1-epimerase, similar to Escherichia coli YihR. Proteins similar to Escherichia coli YihR are uncharacterized members of aldose-1-epimerase superfamily. Aldose 1-epimerases or mutarotases are key enzymes of carbohydrate metabolism, catalyzing the interconversion of the alpha- and beta-anomers of hexose sugars such as glucose and galactose. This interconversion is an important step that allows anomer specific metabolic conversion of sugars. Studies of the catalytic mechanism of the best known member of the family, galactose mutarotase, have shown a glutamate and a histidine residue to be critical for catalysis; the glutamate serves as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen.
Probab=100.00 E-value=2.8e-32 Score=261.14 Aligned_cols=236 Identities=19% Similarity=0.246 Sum_probs=169.4
Q ss_pred eEEEEEcCCeEEEEEEeCCCeEEEecCCccccCCCCCcccCcceecccCCCCC-----------CCC---------CCcc
Q 017699 81 CSAEIYLYGGQVISWKNEYGEELLFLSSKATFTHPKPIRGGIPICFPQFANHG-----------SLE---------KHGF 140 (367)
Q Consensus 81 ~~a~V~~~Ga~l~s~~~~~g~evL~~~~~~~~~~~~~~rgG~PvlFP~~Gr~~-----------~l~---------~HGf 140 (367)
++|+|..+||.|++|+. +|.++||..+.... .+...| ++|||++||+. +|+ +||+
T Consensus 1 ~~v~i~~~Ga~l~~~~~-~g~~il~~~~~~~~---~~~~~g-~~l~p~~nRi~~g~~~~~G~~y~l~~N~~~~~~~~HG~ 75 (284)
T cd09022 1 YRAVVTEVGAGLRSLTV-GGRDLVEPYPADEV---PPGAAG-QVLAPWPNRIADGRYTFDGVEHQLPITEPERGNAIHGL 75 (284)
T ss_pred CEEEEEecCcEEEEEEE-CCEEEEecCCCccC---Cccccc-cEEeeeCCcccCCEEEECCEEEEccCcCCCCCCCCcCC
Confidence 36889999999999998 67899997765432 122234 68999999983 344 9999
Q ss_pred cccCCeEEecCCCCCCCCCCCceEEEEEeccChhhhccCCeeeEEEEEEEEcCCCeEEEEEEEEeCCCCCceEEEeeecc
Q 017699 141 ARSRVWSIDPDPPPFSANSSSQACVDLILKHSEEEVKIWPHRYEFRLRITLGPGGDLMLTSRIRNTNTDGKSFAFTFAYH 220 (367)
Q Consensus 141 ar~~~W~v~~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~~ytL~~~~~L~i~~~v~N~n~~~~p~pf~~g~H 220 (367)
+|.+.|++++.. ...|+|.|... ...+|||+|+++++|+|.+ ++|+|+++++|+ ++++|||++|+|
T Consensus 76 ~~~~~w~v~~~~---------~~~v~l~l~~~--~~~~yP~~~~~~~~y~L~~-~~L~i~~~v~N~--~~~~~p~~~g~H 141 (284)
T cd09022 76 VRWADWQLVEHT---------DSSVTLRTRIP--PQPGYPFTLELTVTYELDD-DGLTVTLTATNV--GDEPAPFGVGFH 141 (284)
T ss_pred eecceEEEeecc---------CCeEEEEEEeC--CccCCCceEEEEEEEEEcC-CcEEEEEEEEeC--CCCCeEeeeEec
Confidence 999999998764 23577777653 3579999999999999998 889999999999 999999999999
Q ss_pred ceeecCCc--ceEEEEccCCcccc--c--cCCccccccccCceeec------C-CCcCeeEecCC------CeEEEEeCC
Q 017699 221 TYFAVSDI--SEVRVEGLETLDYL--D--NLKDKERFTEQGDAITF------E-SEVDKVYLSTP------TKIAILDHE 281 (367)
Q Consensus 221 pYF~~~~~--~~~~i~gl~~~~~l--d--~~~~~~~~~~~~~~~~~------~-~~~D~vy~~~~------~~~~l~d~~ 281 (367)
|||++++. .+++|+--. ..++ | .++.+.... .+..+++ . .++|++|.... ..++|.++.
T Consensus 142 pyF~l~~~~~~~~~L~~~a-~~~~~~d~~~lptg~~~~-~~~~~df~~~~~l~~~~~D~~f~~~~~~~~~~~~~~l~~~~ 219 (284)
T cd09022 142 PYLSAGGAPLDECTLTLPA-DTWLPVDERLLPTGTEPV-AGTPYDFRTGRRLGGTALDTAFTDLTRDADGRARARLTGPD 219 (284)
T ss_pred ceEecCCCCcccEEEEEEC-ceEEecCCccCCCcCcCC-CCCCccCcCCccccCccccccccccccCCCCcEEEEEECCC
Confidence 99999853 454442111 1111 1 112111100 0111222 1 26899987532 268888887
Q ss_pred CCcEEEEEEc-CCCeEEEECCCccchhhhccCCCCCccceEEEccCcc--------CCCeEeCCCCEEEEEEEE
Q 017699 282 RKRTFVLRKD-GLPDAVVWNPWDKKAKAMADFGDDEYKHMLCVEAACV--------EKPIILKPGEEWRGRQEI 346 (367)
Q Consensus 282 ~g~~l~v~~~-~~~~~vvw~P~~~~~~~~~d~~~~~~~~fvCIEP~~~--------~~~~~L~PGe~~~~~~~i 346 (367)
+ +.|+|.++ +++.++||+|..- .....+.|||||||+. .+.++|+|||+++.+++|
T Consensus 220 ~-~~l~l~~~~~~~~~~vyt~~~~--------~~~~~~~~iclEP~~~~~da~n~~~~~~~L~pge~~~~~~~i 284 (284)
T cd09022 220 G-RGVELWADESFPWVQVFTADTL--------PPPGRRRGLAVEPMTCPPNAFNSGTDLIVLAPGETHTASWGI 284 (284)
T ss_pred C-CEEEEEECCCCCEEEEECCCCC--------CCCCCCCEEEEccCCCCCCcCcCCCCcEEECCCCEEEEEEeC
Confidence 6 89999885 7899999997310 0011257999999985 257999999999988775
No 11
>cd09019 galactose_mutarotase_like galactose mutarotase_like. Galactose mutarotase catalyzes the conversion of beta-D-galactose to alpha-D-galactose. Beta-D-galactose is produced by the degradation of lactose, a disaccharide composed of beta-D-glucose and beta-D-galactose. This epimerization reaction is the first step in the four-step Leloir pathway, which converts galactose into metabolically important glucose. This epimerization step is followed by the phosophorylation of alpha-D-galactose by galactokinase, an enzyme which can only act on the alpha anomer. A glutamate and a histidine residue of the galactose mutarotase have been shown to be critical for catalysis, the glutamate serves as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen. Galactose mutarotase is a member of the aldose-1-epimerase superfamily.
Probab=100.00 E-value=5.7e-31 Score=256.98 Aligned_cols=255 Identities=18% Similarity=0.246 Sum_probs=177.5
Q ss_pred EEEEeCCceEEEEEcCCeEEEEEEeCC--C--eEEEecCC-ccccCCCCCcccCcceecccCCCCC-----------CCC
Q 017699 73 VVLREVRGCSAEIYLYGGQVISWKNEY--G--EELLFLSS-KATFTHPKPIRGGIPICFPQFANHG-----------SLE 136 (367)
Q Consensus 73 v~L~n~~g~~a~V~~~Ga~l~s~~~~~--g--~evL~~~~-~~~~~~~~~~rgG~PvlFP~~Gr~~-----------~l~ 136 (367)
++|+|+++++|+|..+||.|.+|+.++ | .++||..+ .+.|....+..| +++.|++||+. +|+
T Consensus 2 ~~l~n~~~~~~~i~~~GA~l~~l~~~~~~g~~~~~v~~~~~~~~~~~~~~~~g--~~lgp~anRi~~g~~~~~G~~y~l~ 79 (326)
T cd09019 2 YTLTNGNGLRVSILNYGATIQSLKVPDKNGKLRDVVLGFDDLEDYLKNSPYFG--ATVGRVANRIANGRFTLDGKTYQLE 79 (326)
T ss_pred EEEECCCCcEEEEECcCcEEEEEEEECCCCCEeeeEECCCCHHHHhhCCCccC--CcccCcCCeecCCEEEECCEEEEcc
Confidence 689999669999999999999999853 3 78999885 556765444444 45789999983 233
Q ss_pred -------C----CcccccCCeEEecCCCCCCCCCCCceEEEEEeccChhhhccCCeeeEEEEEEEEcCCCeEEEEEEEEe
Q 017699 137 -------K----HGFARSRVWSIDPDPPPFSANSSSQACVDLILKHSEEEVKIWPHRYEFRLRITLGPGGDLMLTSRIRN 205 (367)
Q Consensus 137 -------~----HGfar~~~W~v~~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~~ytL~~~~~L~i~~~v~N 205 (367)
+ |||++ ..|++.... +.+|+|.+.+.+ ...+|||+|+++++|+|.++++|+|+++++|
T Consensus 80 ~Ne~~~~LHGg~~G~~~-~~w~~~~~~---------~~~v~l~~~~~~-~~~gyP~~~~~~v~y~L~~~~~L~i~~~~~~ 148 (326)
T cd09019 80 ANEGPNHLHGGPKGFDK-RVWDVEEVE---------ENSVTFSLVSPD-GEEGFPGNLTVTVTYTLTDDNELTIEYEATT 148 (326)
T ss_pred CCCCCcccCCCCccccC-cEEeEEecc---------CCEEEEEEECCc-ccCCCCeEEEEEEEEEECCCCEEEEEEEEEe
Confidence 3 55566 499998763 347888888764 4799999999999999997579999999886
Q ss_pred CCCCCceEEEeeeccceeecCC-----cceEEEE------------ccCCccccccCCccccccccCce---------ee
Q 017699 206 TNTDGKSFAFTFAYHTYFAVSD-----ISEVRVE------------GLETLDYLDNLKDKERFTEQGDA---------IT 259 (367)
Q Consensus 206 ~n~~~~p~pf~~g~HpYF~~~~-----~~~~~i~------------gl~~~~~ld~~~~~~~~~~~~~~---------~~ 259 (367)
. ++|||++|+||||+++. ..+..|. .+|++...+.......+.. ... ..
T Consensus 149 ~----~~~p~~~g~HpyFnl~~~~~~~~~~~~L~~~a~~~~~~d~~~iPtG~~~~~~~~~~df~~-~~~l~~~~~~~~~~ 223 (326)
T cd09019 149 D----KPTPVNLTNHSYFNLAGEGSGDILDHELQINADRYLPVDEELIPTGEILPVAGTPFDFRK-PKPIGRIDLDDEQL 223 (326)
T ss_pred C----CCeEecccceeeEecCCCCCCCccceEEEEecCcEEeeCCCCCcCCCceecCCCCccccC-ccCccccccchhhc
Confidence 4 99999999999999983 3343331 2344332221110011110 000 11
Q ss_pred c-CCCcCeeEe--cC----CCeEEEEeCCCCcEEEEEEcCCCeEEEECCCccchhhhccCCCC--CccceEEEccCcc--
Q 017699 260 F-ESEVDKVYL--ST----PTKIAILDHERKRTFVLRKDGLPDAVVWNPWDKKAKAMADFGDD--EYKHMLCVEAACV-- 328 (367)
Q Consensus 260 ~-~~~~D~vy~--~~----~~~~~l~d~~~g~~l~v~~~~~~~~vvw~P~~~~~~~~~d~~~~--~~~~fvCIEP~~~-- 328 (367)
. ..++|++|. .+ ...++|.++.++++|.|.+ +.++++||++..-... + ..... ..+.+||||||+.
T Consensus 224 ~~~~~~D~~f~l~~~~~~~~~~a~l~~~~sg~~l~v~t-~~p~~~vyT~~~~~~~-~-~~~~~~~~~~~~iclEpq~~pd 300 (326)
T cd09019 224 KLGGGYDHNFVLDKGGGKLRPAARLTSPESGRKLEVYT-TQPGVQFYTGNFLDGT-P-GGGGKVYGKRSGFCLETQHFPD 300 (326)
T ss_pred ccCCCcceEEEECCCCCccceeEEEEcCCCCcEEEEec-CCCEEEEEeCCCCCcc-c-CCCCcEeCCCCEEEEeccCCCC
Confidence 1 247999997 32 2368899998899999987 7899999997321100 0 00011 1257999999973
Q ss_pred ------CCCeEeCCCCEEEEEEEEEE
Q 017699 329 ------EKPIILKPGEEWRGRQEISA 348 (367)
Q Consensus 329 ------~~~~~L~PGe~~~~~~~i~~ 348 (367)
.+.++|+|||+++.+++|++
T Consensus 301 A~n~~~~g~~~L~pge~~~~~~~y~f 326 (326)
T cd09019 301 APNHPNFPSIILRPGETYRHTTVYRF 326 (326)
T ss_pred cccccCCCCeEECCCCEEEEEEEEEC
Confidence 24799999999999998874
No 12
>COG2017 GalM Galactose mutarotase and related enzymes [Carbohydrate transport and metabolism]
Probab=99.98 E-value=1.4e-30 Score=252.28 Aligned_cols=252 Identities=19% Similarity=0.260 Sum_probs=175.0
Q ss_pred cCCeeEEEEEeCCceEEEEEcCCeEEEEEEeCCCeEEEecCCc--cccCCCCCcccCcceecccCCCCC-----------
Q 017699 67 VNGLEKVVLREVRGCSAEIYLYGGQVISWKNEYGEELLFLSSK--ATFTHPKPIRGGIPICFPQFANHG----------- 133 (367)
Q Consensus 67 ~~g~~~v~L~n~~g~~a~V~~~Ga~l~s~~~~~g~evL~~~~~--~~~~~~~~~rgG~PvlFP~~Gr~~----------- 133 (367)
......+++.++.+..+.|..+||.|++|+. +++++++..+. .+.... . .+.++|+||+||+.
T Consensus 9 ~~~~~~i~~~~~~~~~~~~~~~GA~l~~l~~-~~~~v~l~~~~~~~~~~~~-~--~~ga~l~p~anRI~~g~f~~~G~~y 84 (308)
T COG2017 9 GQPVRLLTLGNGGGMVVTVPDWGATLTSLRV-NGRNLLLGFDDAESYPATR-G--YGGAILGPYANRISNGRFTLDGKTY 84 (308)
T ss_pred CCceEEEEEeCCCeEEEEEccCCcEEEEEEE-CCceEEeecCCHHHhcccc-c--cccceecCccCcccCCEEEECCEEE
Confidence 3457788889888888889999999999999 67787655542 222211 1 26688999999983
Q ss_pred CC-------CCCcccccCCeEEecCCCCCCCCCCCceEEEEEeccChhhhccCCeeeEEEEEEEEcCCCeEEEEEEEEeC
Q 017699 134 SL-------EKHGFARSRVWSIDPDPPPFSANSSSQACVDLILKHSEEEVKIWPHRYEFRLRITLGPGGDLMLTSRIRNT 206 (367)
Q Consensus 134 ~l-------~~HGfar~~~W~v~~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~~ytL~~~~~L~i~~~v~N~ 206 (367)
+| ++||+++..+|++..... .+...++|.+.+.+ .+|||+|+++++|+|.+ ++|+|+|+++|.
T Consensus 85 ~L~~N~~~~~lHG~~~~~~~~v~~~~~------~~~~~~~l~~~~~~---~gyP~~l~~~vtY~L~~-~~L~v~~~~~n~ 154 (308)
T COG2017 85 QLPPNEGGNALHGGARDFDWQVWEAEE------DDNAEFSLVLRDGE---DGYPGNLEATVTYTLNE-DGLTVTYEVTND 154 (308)
T ss_pred EeCCCCCCccccCCccCCCeeEEEEEe------ccCCEEEEEecccC---CCCCceEEEEEEEEEcC-CCEEEEEEEEeC
Confidence 34 499999999999998852 22235666665543 46999999999999998 569999999999
Q ss_pred CCCCceEEEeeeccceeecCCcce---EEEEccCCcccc---c--cCCccc--c-ccccCceeecCCCcCeeEecC----
Q 017699 207 NTDGKSFAFTFAYHTYFAVSDISE---VRVEGLETLDYL---D--NLKDKE--R-FTEQGDAITFESEVDKVYLST---- 271 (367)
Q Consensus 207 n~~~~p~pf~~g~HpYF~~~~~~~---~~i~gl~~~~~l---d--~~~~~~--~-~~~~~~~~~~~~~~D~vy~~~---- 271 (367)
++++|||++|+||||+++.... .... ....++ + .++.+. . .......+.....+|+.|...
T Consensus 155 --~~~~~p~~~g~HpYFnl~~~~~~~~~~~~--~~~~~l~~~~~~~ip~~~~~~~~~~~~~~~~~~~~~d~~f~~~~~~~ 230 (308)
T COG2017 155 --GDEPTPFNLGNHPYFNLPGDGRLEHILAI--ASDYYLPVDDEEPIPTGDIKREPKPLEDDFAADDPYDHAFLLNGARG 230 (308)
T ss_pred --CCCcceecccccceEecCCCCCcccEEEe--cCCceEEcccCCCCCcccccccccccccccccccccccceeeccccC
Confidence 9999999999999999986432 2111 111111 1 111110 0 000000111112257777532
Q ss_pred -CCeEEEEeCCCCcEEEEEEcCCCeEEEEC--CCccchhhhccCCCCCccceEEEccCcc-----C----CCeEeCCCCE
Q 017699 272 -PTKIAILDHERKRTFVLRKDGLPDAVVWN--PWDKKAKAMADFGDDEYKHMLCVEAACV-----E----KPIILKPGEE 339 (367)
Q Consensus 272 -~~~~~l~d~~~g~~l~v~~~~~~~~vvw~--P~~~~~~~~~d~~~~~~~~fvCIEP~~~-----~----~~~~L~PGe~ 339 (367)
.+.+.|.++.++++|.|.++ .|.++||+ +.. .+.|+|||||+. + +.++|+|||+
T Consensus 231 ~~~~a~l~~~~~~~~l~v~t~-~p~~~~yt~~~~~-------------~~~~~clEp~~~~pdA~n~~~~~~~~L~pGe~ 296 (308)
T COG2017 231 LKPAARLYDPDSGLSLEVETD-EPFVQLYTGNFLA-------------GRDGLCLEPQSGLPDAFNHPGFGLIVLEPGET 296 (308)
T ss_pred CcceEEEEcCCCCeEEEEEeC-CCeEEEEeCCCCC-------------cCCeEEeeeccCCCCcCCCCCcccceeCCCCE
Confidence 34789999999999999884 45555555 321 157999999983 2 3477999999
Q ss_pred EEEEEEEEEEe
Q 017699 340 WRGRQEISAVP 350 (367)
Q Consensus 340 ~~~~~~i~~~~ 350 (367)
++..++|+++.
T Consensus 297 ~~~~~~~~~~~ 307 (308)
T COG2017 297 YSAETRFRFES 307 (308)
T ss_pred EEEEEEEEEec
Confidence 99999999864
No 13
>PLN00194 aldose 1-epimerase; Provisional
Probab=99.97 E-value=6.6e-28 Score=236.35 Aligned_cols=264 Identities=17% Similarity=0.236 Sum_probs=179.2
Q ss_pred CeeEEEEEeCCceEEEEEcCCeEEEEEEeC--CC--eEEEecCCc-cccCCCCCcccCcceecccCCCCC----------
Q 017699 69 GLEKVVLREVRGCSAEIYLYGGQVISWKNE--YG--EELLFLSSK-ATFTHPKPIRGGIPICFPQFANHG---------- 133 (367)
Q Consensus 69 g~~~v~L~n~~g~~a~V~~~Ga~l~s~~~~--~g--~evL~~~~~-~~~~~~~~~rgG~PvlFP~~Gr~~---------- 133 (367)
.+..++|+|+. ++++|..+||.|++|+.+ +| .+++...+. +.+....+. .|. ++.|+.||+.
T Consensus 8 ~~~~~~L~n~~-l~~~i~~~GA~l~s~~~~~~~g~~~~vvlg~~~~~~y~~~~~~-~Ga-~lgp~anRI~~g~~~~~G~~ 84 (337)
T PLN00194 8 KPGIYELKNGN-ISVKLTNYGATITSLILPDKNGKLADVVLGFDSVEPYKNDSPY-FGA-IVGRVANRIKGAKFTLNGVT 84 (337)
T ss_pred eeEEEEEEeCC-EEEEEECCCcEEEEEEeECCCCCEeeeEECCCCHHHHhhCCCc-cCC-eeCCCCCceeCCEEEECCEE
Confidence 46688999986 999999999999999874 34 566644443 323322344 443 4899999983
Q ss_pred -CC-------CCCcccc---cCCeEEecCCCCCCCCCCCceEEEEEeccChhhhccCCeeeEEEEEEEEcCCCeEEEEEE
Q 017699 134 -SL-------EKHGFAR---SRVWSIDPDPPPFSANSSSQACVDLILKHSEEEVKIWPHRYEFRLRITLGPGGDLMLTSR 202 (367)
Q Consensus 134 -~l-------~~HGfar---~~~W~v~~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~~ytL~~~~~L~i~~~ 202 (367)
++ .+||+.+ .+.|+|.... +++...|+|.+...+ ...+|||+|+++++|+|.++++|+|+++
T Consensus 85 y~l~~N~~~~~lHGg~~G~~~~~w~v~~~~------~~~~~~v~~~l~~~~-~~~gyP~~~~~~v~Y~L~~~~~L~i~~~ 157 (337)
T PLN00194 85 YKLPPNNGPNSLHGGPKGFSKVVWEVAKYK------KGEKPSITFKYHSFD-GEEGFPGDLSVTVTYTLLSSNTLRLDME 157 (337)
T ss_pred EEeccCCCCcccCCCCcccCceEEeEEEec------cCCCcEEEEEEECCC-cCCCCCEEEEEEEEEEECCCCeEEEEEE
Confidence 23 4797643 4899998764 223467999988654 4789999999999999985589999999
Q ss_pred EEeCCCCCceEEEeeeccceeecCC-----cce--EEE----------EccCCccccccCCcccccccc---Cceee-cC
Q 017699 203 IRNTNTDGKSFAFTFAYHTYFAVSD-----ISE--VRV----------EGLETLDYLDNLKDKERFTEQ---GDAIT-FE 261 (367)
Q Consensus 203 v~N~n~~~~p~pf~~g~HpYF~~~~-----~~~--~~i----------~gl~~~~~ld~~~~~~~~~~~---~~~~~-~~ 261 (367)
++|. +++|||++|+||||+++. +.+ +++ +++|++...+.......+... +..+. ..
T Consensus 158 ~~n~---~~~~p~~~g~HpYFnL~~~~~~~i~~~~L~i~a~~~~~~d~~~iPtG~~~~v~~t~~Df~~~~~l~~~~~~~~ 234 (337)
T PLN00194 158 AKPL---NKATPVNLAQHTYWNLAGHNSGDILSHKIQIFGSHITPVDENLIPTGEILPVKGTPFDFTTPKKIGSRINELP 234 (337)
T ss_pred EEEC---CCCeEEEccccceEEcCCCCCCCcCCeEEEEecCCEEEeCCCcCcCCceeeCCCCCcccCCCcCcchhhcccc
Confidence 9975 589999999999999973 223 333 134544332221111111110 00010 12
Q ss_pred CCcCeeEecC-------CCeEEEEeCCCCcEEEEEEcCCCeEEEECCCccc-hhhhccCCCCC--ccceEEEccCcc---
Q 017699 262 SEVDKVYLST-------PTKIAILDHERKRTFVLRKDGLPDAVVWNPWDKK-AKAMADFGDDE--YKHMLCVEAACV--- 328 (367)
Q Consensus 262 ~~~D~vy~~~-------~~~~~l~d~~~g~~l~v~~~~~~~~vvw~P~~~~-~~~~~d~~~~~--~~~fvCIEP~~~--- 328 (367)
.++|++|... ...++|.++.++++|+|.+ +.|.++||++-.-. .+. ..... .+.+||||||..
T Consensus 235 ~g~Dh~f~l~~~~~~~~~~~a~l~~~~sg~~l~v~t-~~p~v~vyT~n~~~~~~~---~~~~~~~~~~~i~lEpq~~pda 310 (337)
T PLN00194 235 KGYDHNYVLDGEEKEGLKKAAKVKDPKSGRVLELWT-NAPGMQFYTSNYVNGVKG---KGGAVYGKHAGLCLETQGFPDA 310 (337)
T ss_pred CCcceEEEECCCCcccceeeEEEEcCCCCCEEEEEe-CCCEEEEECCCCCCCccC---CCCCEeCCCCEEEEeccCCCCc
Confidence 3799999731 2257898988899999998 66999999853110 000 00011 146999999974
Q ss_pred -C----CCeEeCCCCEEEEEEEEEEE
Q 017699 329 -E----KPIILKPGEEWRGRQEISAV 349 (367)
Q Consensus 329 -~----~~~~L~PGe~~~~~~~i~~~ 349 (367)
+ +.++|+|||.+..++.++|.
T Consensus 311 ~n~~~~~~~~L~pge~~~~~t~y~f~ 336 (337)
T PLN00194 311 VNQPNFPSVVVNPGEKYKHTMLFEFS 336 (337)
T ss_pred ccCCCCCCeEECCCCEEEEEEEEEEe
Confidence 2 46899999999999999874
No 14
>TIGR02636 galM_Leloir galactose mutarotase. Members of this protein family act as galactose mutarotase (D-galactose 1-epimerase) and participate in the Leloir pathway for galactose/glucose interconversion. All members of the seed alignment for this model are found in gene clusters with other enzymes of the Leloir pathway. This enzyme family belongs to the aldose 1-epimerase family, described by pfam model pfam01263. However, the enzyme described as aldose 1-epimerase itself (EC 5.1.3.3) is called broadly specific for D-glucose, L-arabinose, D-xylose, D-galactose, maltose and lactose. The restricted genome context for genes in this family suggests members should act primarily on D-galactose.
Probab=99.97 E-value=3.3e-28 Score=238.34 Aligned_cols=261 Identities=15% Similarity=0.198 Sum_probs=178.7
Q ss_pred CeeEEEEEeCCceEEEEEcCCeEEEEEEeCC---CeEEEecCC-ccccCCCCCcccCcceecccCCCCC-----------
Q 017699 69 GLEKVVLREVRGCSAEIYLYGGQVISWKNEY---GEELLFLSS-KATFTHPKPIRGGIPICFPQFANHG----------- 133 (367)
Q Consensus 69 g~~~v~L~n~~g~~a~V~~~Ga~l~s~~~~~---g~evL~~~~-~~~~~~~~~~rgG~PvlFP~~Gr~~----------- 133 (367)
.+..|+|+|.++++|+|..+||.|++|+.++ ..+++...+ .+.+....+. .|+ ++.||+||+.
T Consensus 3 ~v~~~~l~n~~g~~v~i~~~GA~i~~l~~pd~~~~~~vvlg~~~~~~y~~~~~~-~Ga-~igp~anRI~~g~f~~~G~~y 80 (335)
T TIGR02636 3 PAQLITLTNNNGMTISFMDIGATWLSCQVPLAGELREVLLGFASMEEYYKQDAY-LGA-TVGRYANRIANGSFEIDGETY 80 (335)
T ss_pred eeEEEEEECCCCcEEEEeCcCcEEEEEEeeCCCCccceEECCCCHHHHhhCCCc-cCC-CcCCCCceecCCEEEECCEEE
Confidence 3678999998889999999999999999742 356654444 3444333344 444 4789999983
Q ss_pred -------CCCCCccc---ccCCeEEec-CCCCCCCCCCCceEEEEEeccChhhhccCCeeeEEEEEEEEcCCCeEEEEEE
Q 017699 134 -------SLEKHGFA---RSRVWSIDP-DPPPFSANSSSQACVDLILKHSEEEVKIWPHRYEFRLRITLGPGGDLMLTSR 202 (367)
Q Consensus 134 -------~l~~HGfa---r~~~W~v~~-~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~~ytL~~~~~L~i~~~ 202 (367)
...+||+. +.+.|++.. .. ..+|+|.+.+.+ ...+||++++++++|+|+++++|+|+++
T Consensus 81 ~L~~N~~~n~lHGg~~G~~~~~W~v~~~~~---------~~~v~l~~~~~~-~~~gyPg~l~~~vtY~L~~~~~L~i~~~ 150 (335)
T TIGR02636 81 QLSINQGGNCLHGGPEGFDKRRWNIEELQE---------EVQVKFSLESPD-GDQGFPGNLTVSVTYTLTDDNELTIEYE 150 (335)
T ss_pred EeccCCCCcccCCCCccccccEEeEeeecC---------CCEEEEEEECCC-cCCCCCeEEEEEEEEEECCCCEEEEEEE
Confidence 13599998 789999976 43 347889888654 3789999999999999965589999999
Q ss_pred EEeCCCCCceEEEeeeccceeecCCc------ce--EEE----------EccCCccccccCCccccccc---cC------
Q 017699 203 IRNTNTDGKSFAFTFAYHTYFAVSDI------SE--VRV----------EGLETLDYLDNLKDKERFTE---QG------ 255 (367)
Q Consensus 203 v~N~n~~~~p~pf~~g~HpYF~~~~~------~~--~~i----------~gl~~~~~ld~~~~~~~~~~---~~------ 255 (367)
++ ++++|||++|+||||+++.. .+ ++| +.+|++...+.......+.+ ..
T Consensus 151 a~----~d~~tp~nlt~H~YFnL~g~~~~~~i~~~~L~i~a~~~~~~d~~~iPtG~~~~v~~t~~Dfr~~~~l~~~~~~~ 226 (335)
T TIGR02636 151 AT----TDKATPFNLTNHVYFNLDGADAGSDVLSHELQLNADRYLPLDEEGIPLGQLKPVDGTSFDFRKEKAIGQDFLAN 226 (335)
T ss_pred EE----ECCceEEeccccceEEcCCCCCCCChhceEEEEECCcEEEeCCCcCcCCceecCCCCccccCCCcCcCcccccc
Confidence 75 67999999999999999742 22 333 23455543322111111110 00
Q ss_pred ceeecCCCcCeeEec---C---CCeEEEEeCCCCcEEEEEEcCCCeEEEECCCccchhhhccCCCC--CccceEEEccCc
Q 017699 256 DAITFESEVDKVYLS---T---PTKIAILDHERKRTFVLRKDGLPDAVVWNPWDKKAKAMADFGDD--EYKHMLCVEAAC 327 (367)
Q Consensus 256 ~~~~~~~~~D~vy~~---~---~~~~~l~d~~~g~~l~v~~~~~~~~vvw~P~~~~~~~~~d~~~~--~~~~fvCIEP~~ 327 (367)
.......++|++|.. . ...++|.++.++++|.|.+ +.|.++||++..-.. .. ...+. ..+..||||||+
T Consensus 227 ~~~~~~~g~D~~f~l~~~~~~~~~~a~l~~~~sg~~l~v~t-~~p~~~vyT~~~~~~-~~-~~~g~~~~~~~gialE~q~ 303 (335)
T TIGR02636 227 DQQQLAKGYDHAFLLNGERLDGKPAAILTSPDEDLSLEVFT-TQPALQIYTGNFLAG-TP-NRGGKKYVDHAGLALETQF 303 (335)
T ss_pred cccccCCCcceEEEECCCCCCCceeEEEEcCCCCcEEEEec-CCCEEEEecCCCcCC-cc-CCCCcEeCCCcEEEEeccc
Confidence 011112379999973 1 1257899999999999988 779999999621000 00 00011 125799999998
Q ss_pred c----C----CCe--EeCCCCEEEEEEEEEE
Q 017699 328 V----E----KPI--ILKPGEEWRGRQEISA 348 (367)
Q Consensus 328 ~----~----~~~--~L~PGe~~~~~~~i~~ 348 (367)
. + +.+ +|+|||+++..+.++|
T Consensus 304 ~pd~~n~~~~~~~~~~L~pge~~~~~t~y~f 334 (335)
T TIGR02636 304 LPDSPNHPEWGDISCILSPGQEYQHQTRYQF 334 (335)
T ss_pred CCCcccccCCCCCceEECCCCEEEEEEEEEE
Confidence 4 1 223 5999999999999987
No 15
>PRK11055 galM galactose-1-epimerase; Provisional
Probab=99.96 E-value=4.9e-27 Score=230.35 Aligned_cols=263 Identities=17% Similarity=0.205 Sum_probs=179.2
Q ss_pred CCeeEEEEEeCCceEEEEEcCCeEEEEEEeC--CC--eEEEecC-CccccCCCCCcccCcceecccCCCCC---------
Q 017699 68 NGLEKVVLREVRGCSAEIYLYGGQVISWKNE--YG--EELLFLS-SKATFTHPKPIRGGIPICFPQFANHG--------- 133 (367)
Q Consensus 68 ~g~~~v~L~n~~g~~a~V~~~Ga~l~s~~~~--~g--~evL~~~-~~~~~~~~~~~rgG~PvlFP~~Gr~~--------- 133 (367)
..+..|+|+|.++++|+|..+||.|++|+.+ +| .+++... +.+.+....+.+|. ++.||.||+.
T Consensus 7 ~~v~~~tl~n~~g~~v~i~~~GA~i~~l~vpd~~g~~~dvvlg~~~~~~y~~~~~~~Ga--~iGr~anRI~~g~f~~~G~ 84 (342)
T PRK11055 7 QPYRLLTLRNNAGMVVTLMDWGATWLSCRVPLSDGSVREVLLGCASPEDYPDQAAYLGA--SVGRYANRIANSRFTLDGE 84 (342)
T ss_pred CeEEEEEEECCCCeEEEEeCcCcEEEEEEeECCCCCEeeeEECCCCHHHHhhCCCccCc--eeCCcCCcccCCEEEECCE
Confidence 3467899999888999999999999999884 35 5665433 43444433444443 5889999983
Q ss_pred ---------CCCCCccc---ccCCeEEecCCCCCCCCCCCceEEEEEeccChhhhccCCeeeEEEEEEEEcCCCeEEEEE
Q 017699 134 ---------SLEKHGFA---RSRVWSIDPDPPPFSANSSSQACVDLILKHSEEEVKIWPHRYEFRLRITLGPGGDLMLTS 201 (367)
Q Consensus 134 ---------~l~~HGfa---r~~~W~v~~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~~ytL~~~~~L~i~~ 201 (367)
...+||+. +.+.|+++... ...|+|.+.+.+ ...+||++++++++|+|.++++|+|++
T Consensus 85 ~y~L~~N~~~n~lHGg~~G~~~~~W~v~~~~---------~~~v~l~~~~~~-g~~GyPg~l~~~vtY~L~~~~~l~i~~ 154 (342)
T PRK11055 85 TYQLSPNQGGNQLHGGPEGFDKRRWQIVNQN---------DRQVTFSLSSPD-GDQGFPGNLGATVTYRLTDDNRVSITY 154 (342)
T ss_pred EEEcccCCCCcccCCCCcccCCcEEEEEEcc---------CCEEEEEEECCC-cCCCCCeEEEEEEEEEEcCCCeEEEEE
Confidence 23689985 56899997653 236888888653 468999999999999999756888887
Q ss_pred EEEeCCCCCceEEEeeeccceeecCC------cce--EEE----------EccCCccccccCCccccccc---cCc----
Q 017699 202 RIRNTNTDGKSFAFTFAYHTYFAVSD------ISE--VRV----------EGLETLDYLDNLKDKERFTE---QGD---- 256 (367)
Q Consensus 202 ~v~N~n~~~~p~pf~~g~HpYF~~~~------~~~--~~i----------~gl~~~~~ld~~~~~~~~~~---~~~---- 256 (367)
++ + +++++||++|+||||+++. +.+ ++| +.+|++...+.......|.+ ...
T Consensus 155 ~a--~--~d~~tp~nlt~H~YFnL~g~~~~~~i~~h~L~i~a~~~~~~d~~~iPTG~~~~v~~t~~DFr~~~~l~~~~~~ 230 (342)
T PRK11055 155 RA--T--VDKPCPVNLTNHAYFNLDGAEEGSDVRNHKLQINADEYLPVDEGGIPNGGLKSVAGTSFDFRQPKTIAQDFLA 230 (342)
T ss_pred EE--E--cCCCeEEeccccceEECCCCCCCCCccceEEEEecCCEEEECcccCccCcEeccCCCcccccCCcCcCccccc
Confidence 74 5 7899999999999999974 112 333 24555543322111111111 011
Q ss_pred --eeecCCCcCeeEecC------CCeEEEEeCCCCcEEEEEEcCCCeEEEECCCccchhhhccCCCCC--ccceEEEccC
Q 017699 257 --AITFESEVDKVYLST------PTKIAILDHERKRTFVLRKDGLPDAVVWNPWDKKAKAMADFGDDE--YKHMLCVEAA 326 (367)
Q Consensus 257 --~~~~~~~~D~vy~~~------~~~~~l~d~~~g~~l~v~~~~~~~~vvw~P~~~~~~~~~d~~~~~--~~~fvCIEP~ 326 (367)
+.....++|++|+.. ...+++.++.++++|.|.+ +.|.++||++..-... . ...+.. .+..||||||
T Consensus 231 ~~~~~~~~g~D~~fvl~~~~~~~~~~a~l~~~~sg~~l~v~t-~~p~lqvYT~n~~~~~-~-~~~g~~~~~~~gialE~q 307 (342)
T PRK11055 231 DDDQQKVKGYDHAFLLQAKGDGKKPAAHLWSPDEKLQMKVYT-TAPALQFYSGNFLAGT-P-SRGGGPYADYAGLALESQ 307 (342)
T ss_pred chhcccCCCcceEEEECCCCcccceeEEEEcCCCCeEEEEEc-CCCEEEEecCCccCCc-c-CCCCcEeCCCceEEEEcc
Confidence 111114799999631 1247888888999999987 8899999995210000 0 001111 2468999999
Q ss_pred cc----C------CCeEeCCCCEEEEEEEEEEE
Q 017699 327 CV----E------KPIILKPGEEWRGRQEISAV 349 (367)
Q Consensus 327 ~~----~------~~~~L~PGe~~~~~~~i~~~ 349 (367)
.. + +.++|+|||.++..+.++|.
T Consensus 308 ~~Pda~n~~~f~~~~~~L~pg~~y~~~t~y~f~ 340 (342)
T PRK11055 308 FLPDSPNHPEWPQPDCILKPGEEYRSLTEYQFI 340 (342)
T ss_pred cCCCcccccCCCCCCeEECCCCEEEEEEEEEEE
Confidence 63 1 26899999999999999884
No 16
>PTZ00485 aldolase 1-epimerase; Provisional
Probab=99.94 E-value=5.9e-24 Score=209.96 Aligned_cols=273 Identities=13% Similarity=0.078 Sum_probs=182.5
Q ss_pred cCCeeEEEEEeCCceEEEEEcCCeEEEEEEeC--C-C--eEEEecCC--ccccCCCCCcccCcceecccCCCCC------
Q 017699 67 VNGLEKVVLREVRGCSAEIYLYGGQVISWKNE--Y-G--EELLFLSS--KATFTHPKPIRGGIPICFPQFANHG------ 133 (367)
Q Consensus 67 ~~g~~~v~L~n~~g~~a~V~~~Ga~l~s~~~~--~-g--~evL~~~~--~~~~~~~~~~rgG~PvlFP~~Gr~~------ 133 (367)
.+-...|+|+|++ +++.|..+||.|++++.+ + | .+|+...+ .+.+....+. .|+ ++.||+||+.
T Consensus 10 ~~~~~~~~L~N~~-~~v~i~n~GA~i~si~v~~~~~g~~~dvvLG~d~~~~~Y~~~~~y-~Ga-~iGr~AnRI~~G~f~l 86 (376)
T PTZ00485 10 YGYDKLVWLETDR-LKVGLTNYAASVASIQVYHPADNKWIEVNCGYPKNPEEAYADPDY-MGA-TVGRCAGRVAGGVFTL 86 (376)
T ss_pred cCCCcEEEEEeCC-EEEEEECcCcEEEEEEEEcCCCCcEEeEEECCCCCHHHHhhCCCc-cCc-EeCCCCCeEECCEEEE
Confidence 5668899999996 999999999999999883 3 5 46654442 3444433344 554 4779999983
Q ss_pred -----C-------CCCC----cccccCCeEEecCCCCCCCCCCCceEEEEEeccChhhhccCCeeeEEEEEEEEc--CCC
Q 017699 134 -----S-------LEKH----GFARSRVWSIDPDPPPFSANSSSQACVDLILKHSEEEVKIWPHRYEFRLRITLG--PGG 195 (367)
Q Consensus 134 -----~-------l~~H----Gfar~~~W~v~~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~~ytL~--~~~ 195 (367)
+ ..+| ||- .+.|++.... +.+..+|+|.+.+ ++...+||++++++++|+|. +++
T Consensus 87 dG~~YqL~~Neg~n~LHGG~~gf~-~~~W~v~~~~------~~~~~~V~f~~~~-~dg~~GfPG~l~v~vtYtL~~~~~~ 158 (376)
T PTZ00485 87 DGVKYYTQKNRGENTCHCGDDAYH-KKHWGMKLIE------TANVIGVRFNYTS-PHMENGFPGELVSKVTYSIERSKPN 158 (376)
T ss_pred CCEEEEccCCCCCcccCCCCCccc-eeeeeEEEec------cCCCcEEEEEEEC-CCcCCCCCEEEEEEEEEEEecCCCC
Confidence 1 2344 565 5899985432 1233579999986 44579999999999999996 248
Q ss_pred eEEEE---EEEEeCCCCCceEEEeeeccceeecCCc-----------------c--eEEE----------EccCCccccc
Q 017699 196 DLMLT---SRIRNTNTDGKSFAFTFAYHTYFAVSDI-----------------S--EVRV----------EGLETLDYLD 243 (367)
Q Consensus 196 ~L~i~---~~v~N~n~~~~p~pf~~g~HpYF~~~~~-----------------~--~~~i----------~gl~~~~~ld 243 (367)
+|+|+ ++++|+ +++++||++++|+||++... . .++| +.+|+++.++
T Consensus 159 ~L~i~y~a~~~~n~--~d~~Tp~nltnH~YFNL~g~~~~~~~~~~~~~~~~~i~~h~L~i~a~~~l~~de~~IPTG~i~~ 236 (376)
T PTZ00485 159 VLKTIYDSYIPETS--PADATPVNIFNHAYWNLNGIPERNGKKNAVWVQPESVRNHWLRVPASRVAEADRMAIPTGEFLS 236 (376)
T ss_pred EEEEEEEEEecccc--CCccceeeeccceeEEcCCCccccccccccccCCCcccceEEEEecCcEEEeCcccCccCceec
Confidence 99999 777778 99999999999999999631 1 2343 2466665443
Q ss_pred cCCccccccc---cCcee----ec---CCCcCeeEec-C--C----CeEEEEeCCCCcEEEEEEcCCCeEEEECCCccch
Q 017699 244 NLKDKERFTE---QGDAI----TF---ESEVDKVYLS-T--P----TKIAILDHERKRTFVLRKDGLPDAVVWNPWDKKA 306 (367)
Q Consensus 244 ~~~~~~~~~~---~~~~~----~~---~~~~D~vy~~-~--~----~~~~l~d~~~g~~l~v~~~~~~~~vvw~P~~~~~ 306 (367)
.......+.+ .+..+ .+ ..++|++|+- . . ..+.+.++.+|++|.|.+ +.|.++||+.-.-..
T Consensus 237 v~~t~fDfr~~~~ig~~~~~~~~~~~~~~G~Dh~fvl~~~~~~~~~~~a~l~~p~sg~~l~v~T-~~P~~qiYT~n~l~~ 315 (376)
T PTZ00485 237 VEGTGLDFRQGRVIGDCIDDVALLDRDPCGYDHPLAIDGWEKGKLMLHAEAKSPVTNICMKVYS-TFPCMWVYTANNKPL 315 (376)
T ss_pred cCCCCccCcCCcccchhhhhhhhhcccCCCCCcceEECCCCCccccEEEEEEcCCCCCEEEEEE-CCCEEEEECCCCCCc
Confidence 2111111110 01111 11 1479999964 2 1 136899999999999998 899999999521100
Q ss_pred hhhccCCCCCc--cceEEEccCcc----CC-----CeEeCCCCE-EEEEEEEEEEecCCCCC
Q 017699 307 KAMADFGDDEY--KHMLCVEAACV----EK-----PIILKPGEE-WRGRQEISAVPSSYCSG 356 (367)
Q Consensus 307 ~~~~d~~~~~~--~~fvCIEP~~~----~~-----~~~L~PGe~-~~~~~~i~~~~~~~~~~ 356 (367)
... ...+..| +..||+|||.. ++ .++|+|||. ++.++.++|..- ||.
T Consensus 316 ~~~-~~~g~~~~~~~giclE~Q~~PDa~n~~~~fp~~vl~pge~~~~~~t~y~f~~~--~~~ 374 (376)
T PTZ00485 316 PAS-GGPGQRYARWTGMGLEPQYFPDVANHYPKYPSCIVRRGERRFTETILNEFTVE--CSS 374 (376)
T ss_pred ccc-CCCCcCcCCCCEEEEeccCCCCcccccCCCCCeEECCCCeEEEEEEEEEEEee--ccC
Confidence 000 0111112 36899999973 22 489999999 888888888543 554
No 17
>KOG1604 consensus Predicted mutarotase [Carbohydrate transport and metabolism]
Probab=99.85 E-value=5.2e-19 Score=167.84 Aligned_cols=267 Identities=17% Similarity=0.253 Sum_probs=178.6
Q ss_pred EEeccCCeeEEEEEeCCceEEEEEcCCeEEEEEEeCCC----eE-EEecCCccccCC-CCCcccCcceecccCCCCC---
Q 017699 63 HCKGVNGLEKVVLREVRGCSAEIYLYGGQVISWKNEYG----EE-LLFLSSKATFTH-PKPIRGGIPICFPQFANHG--- 133 (367)
Q Consensus 63 ~~~~~~g~~~v~L~n~~g~~a~V~~~Ga~l~s~~~~~g----~e-vL~~~~~~~~~~-~~~~rgG~PvlFP~~Gr~~--- 133 (367)
+..+.+-...++|.++.+++|.|..+||.|+|++.+|. .+ +|-..+-+.|.. .+++.|++ +--+++|+.
T Consensus 13 ~~~~~~~~~~~tl~n~~~l~vti~~~GATi~sL~vpd~~gk~~DVVLGfd~v~gY~~~~~~yfGat--vGRvANRI~~G~ 90 (353)
T KOG1604|consen 13 NTDQKQTIRVYTLGNGKGLQVTIINLGATITSLKVPDKSGKLDDVVLGFDDVDGYLKDDAAYFGAT--VGRVANRIAKGK 90 (353)
T ss_pred cccccCceEEEEecCCCeeEEEEeeCCcEEEEEEcCCcCCcccceEecccchhhhccCCcceecce--ehhhhhhcccce
Confidence 34445668899999999999999999999999998742 34 454444455544 34444432 445555652
Q ss_pred ---------------CCCCCc----ccccCCeEEecCCCCCCCCCCCceEEEEEeccChhhhccCCeeeEEEEEEEEcCC
Q 017699 134 ---------------SLEKHG----FARSRVWSIDPDPPPFSANSSSQACVDLILKHSEEEVKIWPHRYEFRLRITLGPG 194 (367)
Q Consensus 134 ---------------~l~~HG----far~~~W~v~~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~~ytL~~~ 194 (367)
+..+|| |-+ ..|++..... +. .++|++.+ +++.++||++++++++|+|..+
T Consensus 91 F~ldgk~y~lt~N~g~n~lHgg~~gf~~-~~w~v~~~~~-------~~-~i~f~~~s-~dg~eg~PG~l~V~vtYtLn~~ 160 (353)
T KOG1604|consen 91 FSLDGKPYKLTVNNGKNTLHGGIKGFDK-VIWEVVKHQP-------DG-VIVFSHLS-PDGDEGFPGDLKVTVTYTLNVA 160 (353)
T ss_pred EEECCceEEecccCCCccccCCcccccc-eEEEEEEecC-------CC-EEEEEEEC-CCCCCCCCccEEEEEEEEEccC
Confidence 234664 443 7899998852 22 26888876 5678999999999999999988
Q ss_pred CeEEEEEEEEeCCCCCceEEEeeeccceeecCC-----cc--eEEEE----------ccCCccccccCCcccccc---cc
Q 017699 195 GDLMLTSRIRNTNTDGKSFAFTFAYHTYFAVSD-----IS--EVRVE----------GLETLDYLDNLKDKERFT---EQ 254 (367)
Q Consensus 195 ~~L~i~~~v~N~n~~~~p~pf~~g~HpYF~~~~-----~~--~~~i~----------gl~~~~~ld~~~~~~~~~---~~ 254 (367)
++|.+.+..+-. ++++|++++.|+|||+.. +. +++|. .+|+++..+.......+. ..
T Consensus 161 n~l~i~~~A~~~---~~~TPiNLtnHsYfNL~g~~s~~I~~heI~i~a~~~~evd~~~iPTG~I~~v~~t~fD~r~p~~l 237 (353)
T KOG1604|consen 161 NRLLIMMEATAL---DKATPINLTNHSYFNLAGHNSGGIEGHEIQIEASKITEVDDTLIPTGEITPVKGTTFDFRKPTVL 237 (353)
T ss_pred Ceeeeeehhhcc---CCCcceeeccceeEeccCCCCCCccceEEEEeecccEecCCccccccceEeccCccccccCCeec
Confidence 999998875422 789999999999999973 22 24442 345555432211111111 11
Q ss_pred Ccee-ecC--CCcCeeEecC---C-----CeEEEEeCCCCcEEEEEEcCCCeEEEECCCccchhhhccCCCC-C----cc
Q 017699 255 GDAI-TFE--SEVDKVYLST---P-----TKIAILDHERKRTFVLRKDGLPDAVVWNPWDKKAKAMADFGDD-E----YK 318 (367)
Q Consensus 255 ~~~~-~~~--~~~D~vy~~~---~-----~~~~l~d~~~g~~l~v~~~~~~~~vvw~P~~~~~~~~~d~~~~-~----~~ 318 (367)
++.+ .+. .++|..|.-. + ..+.+.++.++|.|.|.+ +-|.+++|+.- -|.|+.+. + ..
T Consensus 238 gd~~~~~~~i~g~d~n~~~~~~~~~~~l~~v~k~~hp~Sgr~lEv~T-nqPgvqfYTgn-----~~~~~~gk~g~~y~k~ 311 (353)
T KOG1604|consen 238 GDRIKQFECIVGYDINYVLDGSVPPNKLRKVAKAVHPKSGRKLEVST-NQPGVQFYTGN-----FLPDIKGKKGAVYPKH 311 (353)
T ss_pred cccccccccccCCCcceEEccCCCCcccEEEEEEEcCccCcEEEEEe-CCCcEEEEecc-----ccccccCCCceEeecc
Confidence 1111 122 4577778521 1 247788999999999998 88999999830 11111111 1 23
Q ss_pred ceEEEccCcc----C----CCeEeCCCCEEEEEEEEEEEe
Q 017699 319 HMLCVEAACV----E----KPIILKPGEEWRGRQEISAVP 350 (367)
Q Consensus 319 ~fvCIEP~~~----~----~~~~L~PGe~~~~~~~i~~~~ 350 (367)
.++|+|++.. + ..++|+|||++..++.++|.-
T Consensus 312 g~~cletq~~pda~n~~~fp~v~l~pGE~Y~h~~~y~Fsv 351 (353)
T KOG1604|consen 312 GGLCLETQYFPDAVNHPNFPSVILRPGETYTHETVYKFSV 351 (353)
T ss_pred ceEEeecccCccccccCCCCceEecCCCeeeeEEEEEEec
Confidence 5999999864 2 349999999999999998853
No 18
>cd09023 Aldose_epim_Ec_c4013 Aldose 1-epimerase, similar to Escherichia coli c4013. Proteins, similar to Escherichia coli c4013, are uncharacterized members of aldose-1-epimerase superfamily. Aldose 1-epimerases or mutarotases are key enzymes of carbohydrate metabolism, catalyzing the interconversion of the alpha- and beta-anomers of hexose sugars such as glucose and galactose. This interconversion is an important step that allows anomer specific metabolic conversion of sugars. Studies of the catalytic mechanism of the best known member of the family, galactose mutarotase, have shown a glutamate and a histidine residue to be critical for catalysis; the glutamate serves as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen.
Probab=99.80 E-value=1.5e-18 Score=166.48 Aligned_cols=237 Identities=16% Similarity=0.151 Sum_probs=149.2
Q ss_pred EEcCCeEEEEEEeCCCeEEEecCCcccc-----CCC-----CCcccCccee--cccCCCC-----CCCCCCcccccCCeE
Q 017699 85 IYLYGGQVISWKNEYGEELLFLSSKATF-----THP-----KPIRGGIPIC--FPQFANH-----GSLEKHGFARSRVWS 147 (367)
Q Consensus 85 V~~~Ga~l~s~~~~~g~evL~~~~~~~~-----~~~-----~~~rgG~Pvl--FP~~Gr~-----~~l~~HGfar~~~W~ 147 (367)
++..|..|.++.. +|.++.|.+....- ... ....||.-+- ++.+|.- ..+++||++++.+|+
T Consensus 5 lp~rg~dI~~~~~-~g~~l~w~s~~~~~~~~~~~~~~~~~~~~~~gg~~~~cGl~~~g~p~~~~~~~~~lHG~~~~~p~~ 83 (284)
T cd09023 5 LPDRGMDIGRASY-KGIPLGWLSPVGLVVPPYYESEGGGGWRSFFGGLLTTCGLDHIGHPEVDDGEEYPLHGRISNTPAE 83 (284)
T ss_pred cccCCcceeeeEE-CCEEeccCCCCCCCCCccccCCCchhHhhcCCEEEEeECccccCCCCcCCCccccCcccccCCCcc
Confidence 3458888888888 58888887653211 100 0122333333 3444532 247899999999999
Q ss_pred EecCCCCCCCCCCCceEEEEEeccChhhhccCCeeeEEEEEEEEcCCCeEEEEEEEEeCCCCCceEEEeeeccceeecCC
Q 017699 148 IDPDPPPFSANSSSQACVDLILKHSEEEVKIWPHRYEFRLRITLGPGGDLMLTSRIRNTNTDGKSFAFTFAYHTYFAVSD 227 (367)
Q Consensus 148 v~~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~~ytL~~~~~L~i~~~v~N~n~~~~p~pf~~g~HpYF~~~~ 227 (367)
++.... ++++...|++.....+....+|||.++.+++|+|.+ ++|+|+++|+|+ ++++||+.+++|+||..+-
T Consensus 84 ~~~~~~----~~~~~~~v~l~~~~~~~~~~g~~~~l~~~i~~~l~~-~~l~i~~~VtN~--g~~~~P~~~~~H~n~~~p~ 156 (284)
T cd09023 84 LVGVEE----DEEGDYEIEVSGEVREAALFGENLRLERTIETDLGS-NEIRLEDRVTNE--GFRPTPHMLLYHVNFGYPL 156 (284)
T ss_pred eEEEEe----ccCCCeEEEEEEEEEEeeeecCceEEEEEEEEecCC-ceEEEEEEEEeC--CCCCCcceEEeeEEcCCcc
Confidence 988752 112445566666543334578999999999999998 899999999999 9999999999999998763
Q ss_pred cc-eEEEEccCCcccccc---CCccc-cccccCceeecCCCcCeeEec-----C--CCeEEEEeCCCCcEEEEEEc--CC
Q 017699 228 IS-EVRVEGLETLDYLDN---LKDKE-RFTEQGDAITFESEVDKVYLS-----T--PTKIAILDHERKRTFVLRKD--GL 293 (367)
Q Consensus 228 ~~-~~~i~gl~~~~~ld~---~~~~~-~~~~~~~~~~~~~~~D~vy~~-----~--~~~~~l~d~~~g~~l~v~~~--~~ 293 (367)
.+ +.+|.. +.....+. ...+. .+...... -....+.+|.. . ...+.|.++..+.++.|..+ .|
T Consensus 157 l~~~~~l~~-p~~~~~p~~~~~~~~~~~~~~~~~p--~~~~~e~v~~~~~~~d~~g~~~~~l~~~~~g~~~~l~~~~~~~ 233 (284)
T cd09023 157 LDEGARLEI-PSKEVTPRDAHAAEGLASWNTYLAP--TPGFAEQVYFHEPAADEDGRAPAALVNPRLGLGVEVRFDTDTL 233 (284)
T ss_pred cCCCCEEEe-cccccccCChhhcccccccccccCC--CCCCccEEEEEeccccCCCceeEEEEcCCCCcEEEEEEehhhC
Confidence 22 333321 11111110 00000 00000000 00112334421 1 24688888877767777664 59
Q ss_pred CeEEEECCCccchhhhccCCCCCccceEEEccCcc-----------CCCeEeCCCCEEEEEE
Q 017699 294 PDAVVWNPWDKKAKAMADFGDDEYKHMLCVEAACV-----------EKPIILKPGEEWRGRQ 344 (367)
Q Consensus 294 ~~~vvw~P~~~~~~~~~d~~~~~~~~fvCIEP~~~-----------~~~~~L~PGe~~~~~~ 344 (367)
|++++|+.... . ...+||||++. .+++.|+|||++++++
T Consensus 234 p~~~~W~~~~~----------~--~y~lalEP~T~~p~~~~~~~~~g~l~~L~PGEs~~~~l 283 (284)
T cd09023 234 PYLTQWKNTGA----------G--AYVLGLEPATNFPNGRAFEREQGELPTLAPGESRSYRL 283 (284)
T ss_pred CHHHHHhccCC----------C--ccEEEEccccCCCcchHHHHHCCCcceECCCCeEEEee
Confidence 99999996321 1 34788999983 3679999999998765
No 19
>PF14486 DUF4432: Domain of unknown function (DUF4432); PDB: 3TY1_A.
Probab=99.26 E-value=2.6e-10 Score=110.45 Aligned_cols=258 Identities=16% Similarity=0.158 Sum_probs=135.1
Q ss_pred CCeeEEEEEeCCceEEEEEc-CCeEEEEEEeCCCeEEEecCCcc-----ccC--CCCCcc---cCc-ceec-ccCCCCC-
Q 017699 68 NGLEKVVLREVRGCSAEIYL-YGGQVISWKNEYGEELLFLSSKA-----TFT--HPKPIR---GGI-PICF-PQFANHG- 133 (367)
Q Consensus 68 ~g~~~v~L~n~~g~~a~V~~-~Ga~l~s~~~~~g~evL~~~~~~-----~~~--~~~~~r---gG~-PvlF-P~~Gr~~- 133 (367)
.|+..++|+|+.+++++|.+ .|..|-.... +|.++-|..... .+. ...... +|. .-|- ..+|.-.
T Consensus 2 ~Gv~~l~i~N~~gl~~~vlp~rg~dI~~~~~-~G~~l~w~s~~~~~~P~~~~~~~g~~~l~~f~g~l~tcGl~~~G~P~~ 80 (302)
T PF14486_consen 2 RGVRALEIRNGGGLRFTVLPDRGMDIWDAEF-DGVNLGWHSPFGLVHPAYYDSPGGLGWLRTFGGFLFTCGLDNNGAPSE 80 (302)
T ss_dssp TT-EEEEEEETTS-EEEEETTTTTEEEEEEE-TTEEE----S-----GGG--HHHHTGGGGT---SEEEEEES--SS-EE
T ss_pred CCcEEEEEECCCCcEEEEecccCCceEEEEE-CCEEecccCCCcCCCCccccccCCcchhhcccchheeeccccCCCCCC
Confidence 58899999997789998875 8999999998 689988866542 111 000000 111 1111 1222211
Q ss_pred ----CCCCCcccccCCeEEecCCCCCCCCCCCceEEEEEeccChhhhccCCeeeEEEEEEEE--cCCCeEEEEEEEEeCC
Q 017699 134 ----SLEKHGFARSRVWSIDPDPPPFSANSSSQACVDLILKHSEEEVKIWPHRYEFRLRITL--GPGGDLMLTSRIRNTN 207 (367)
Q Consensus 134 ----~l~~HGfar~~~W~v~~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~~ytL--~~~~~L~i~~~v~N~n 207 (367)
.+++||=..+.+|+.+.... ++++...+++.=...+ ...|-..|+++=++++ .. +.++|+.+|+|.
T Consensus 81 ~~g~~~~LHG~i~~~Pa~~v~~~~----~~~~~~~i~v~G~v~~--~~~fg~~l~l~r~i~~~~g~-~~i~i~d~VtN~- 152 (302)
T PF14486_consen 81 DDGETYPLHGRISNTPAEHVWLEI----WDGDGYEIEVSGEVRE--AAGFGENLRLERTIRLRAGS-NTIRIEDRVTNL- 152 (302)
T ss_dssp ETTEEE-TTBSGGGS--SEEEEEE----ESSTT--EEEEEEEEE--EETTTEEEEEEEEEEE-TT--SEEEEEEEEEE--
T ss_pred cCCccccccccccCCCcceEEEEE----ecCCCcEEEEEEEEEE--EEeccCcEEEEEEEEEECCC-cEEEEEEEEEEC-
Confidence 36899999999998765541 1223344544322212 3557777777777776 55 899999999999
Q ss_pred CCCceEEEeeeccceeecCCc-ceEEEEccCCccccccCCccccccccCceeecC--CCcCeeEec-----CCC--eEEE
Q 017699 208 TDGKSFAFTFAYHTYFAVSDI-SEVRVEGLETLDYLDNLKDKERFTEQGDAITFE--SEVDKVYLS-----TPT--KIAI 277 (367)
Q Consensus 208 ~~~~p~pf~~g~HpYF~~~~~-~~~~i~gl~~~~~ld~~~~~~~~~~~~~~~~~~--~~~D~vy~~-----~~~--~~~l 277 (367)
+..|||+.+.+|.-|-.+-. +..+|. .+...+.+...........-..+.-. ..-+.||.. ..+ .+.|
T Consensus 153 -~~~p~p~m~lyH~N~G~pll~eg~ri~-~p~~~~~~~~~~a~~~~~~~~~~~~P~~~~~E~Vy~~~~~~d~~G~~~~~l 230 (302)
T PF14486_consen 153 -GFQPMPLMYLYHMNFGYPLLDEGARIV-APTKEVTPRDDRAAEGIADWDRMPAPQPGFPEQVYFHDLLADEDGWAHAAL 230 (302)
T ss_dssp -SSS-EEEEEEEEEEE-TTT-STT-EEE---EEEEEESSGGGGGGSTTTTB---S-TT---EEEEEEE---TTSEEEEEE
T ss_pred -CCCCchhHHhhhhccCccccCCCcEEE-cCcccccCCchhhhcCCccceecCCCCCCCCcEEEEecccccCCCcEEEEE
Confidence 99999999999999988732 223332 11122111100000000000011111 113456642 123 3778
Q ss_pred EeCCCCcEEEEEE--cCCCeEEEECCCccchhhhccCCCCCccceEEEccCcc-----------CCCeEeCCCCEEEEEE
Q 017699 278 LDHERKRTFVLRK--DGLPDAVVWNPWDKKAKAMADFGDDEYKHMLCVEAACV-----------EKPIILKPGEEWRGRQ 344 (367)
Q Consensus 278 ~d~~~g~~l~v~~--~~~~~~vvw~P~~~~~~~~~d~~~~~~~~fvCIEP~~~-----------~~~~~L~PGe~~~~~~ 344 (367)
..+..+..+.|.. +.+|++.+|-.... + ...++|||.+. ..++.|+|||+.++++
T Consensus 231 ~n~~~g~g~~v~f~~~~lP~~~~Wk~~~~----------~--~yv~gLEP~T~~p~g~~~~~~~G~l~~L~pge~~~~~l 298 (302)
T PF14486_consen 231 VNPDGGLGFEVRFDTSQLPYLTQWKNYGG----------G--EYVLGLEPATCRPEGRAAAREAGTLPMLAPGESREFSL 298 (302)
T ss_dssp E-SSSS-EEEEEEETTTS-EEEEEEEES-----------T---EEEEEEEESS-SS-HHHHHHTT--EEE-TT-EEEEEE
T ss_pred ECCCCCcEEEEEEchHHCChhHhheeCCC----------C--EeEEEEecccCCCCCHHHHHhCCCcceECCCCeEEEEE
Confidence 8888778777765 47999999974221 1 24899999983 3579999999999998
Q ss_pred EEEE
Q 017699 345 EISA 348 (367)
Q Consensus 345 ~i~~ 348 (367)
++.+
T Consensus 299 ~~~v 302 (302)
T PF14486_consen 299 EFGV 302 (302)
T ss_dssp EEE-
T ss_pred EecC
Confidence 8764
No 20
>cd09269 deoxyribose_mutarotase deoxyribose mutarotase_like. Salmonella enterica serovar Typhi DeoM (earlier named as DeoX) is a mutarotase with high specificity for deoxyribose. It is encoded by one of four genes beonging to the deoK operon. This operon has also been found in Escherichia coli where it is more common in pathogenic than in commensal strains and is associated with pathogenicity. It has been found on a pathogenicity island from a human blood isolate AL863 and confers the ability to use deoxyribose as a carbon source; deoxyribose is not fermented by non-pathogenic E.coli K-12. Proteins in this family are members of the aldose-1-epimerase superfamily. Aldose 1-epimerases, or mutarotases, are key enzymes of carbohydrate metabolism, catalyzing the interconversion of the alpha- and beta-anomers of hexose sugars such as glucose and galactose. This interconversion is an important step that allows anomer specific metabolic conversion of sugars. Studies of the catalytic mechani
Probab=99.15 E-value=1.1e-09 Score=105.41 Aligned_cols=186 Identities=16% Similarity=0.211 Sum_probs=109.8
Q ss_pred CCCCCcccccCC----eEEecCCCCCCCCCCCceEEEEEeccChhhhccCCeeeEEEEEEEEcC-CCeEEEEEEEEeCCC
Q 017699 134 SLEKHGFARSRV----WSIDPDPPPFSANSSSQACVDLILKHSEEEVKIWPHRYEFRLRITLGP-GGDLMLTSRIRNTNT 208 (367)
Q Consensus 134 ~l~~HGfar~~~----W~v~~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~~ytL~~-~~~L~i~~~v~N~n~ 208 (367)
.+++||-..+.+ |.++..+ ++...|++.-... ...+||++|+++.+|+|.. .+.|+|+++|+|.
T Consensus 61 ~~~LHG~~~~~p~~~~w~~~~~d-------~~~~~l~l~g~~~--~~~~fg~~y~a~~~i~L~~g~~~l~i~~~VtN~-- 129 (293)
T cd09269 61 THPLHGEFPCAPMDEAWLEVGED-------ASGDYLALTGEYE--YVQGFGHHYLAQPSVTLRAGSALFDIGMDVTNL-- 129 (293)
T ss_pred ccCCcCCcCCCCccceEEEEEec-------CCCCEEEEEEEEE--eeeccCccEEEEEEEEEeCCCCEEEEEEEEEEC--
Confidence 468999954444 4444321 2234455544322 2468999999999999974 3789999999999
Q ss_pred CCceEEEeeeccceeecCCcceEE---------EE-ccCC-----ccccccCCccccccccC---ceeecCCCc--CeeE
Q 017699 209 DGKSFAFTFAYHTYFAVSDISEVR---------VE-GLET-----LDYLDNLKDKERFTEQG---DAITFESEV--DKVY 268 (367)
Q Consensus 209 ~~~p~pf~~g~HpYF~~~~~~~~~---------i~-gl~~-----~~~ld~~~~~~~~~~~~---~~~~~~~~~--D~vy 268 (367)
++.|||+.+++|+||......++. ++ .++. ..+.... ....++. +.+.-.... ..||
T Consensus 130 g~~p~p~~~~~H~nfg~~~garl~~p~~~~~~~~~~~~p~~v~p~~~w~~~~---~~~~~~~~~~~~~~~P~~~~~E~V~ 206 (293)
T cd09269 130 SAQPMPLMYMCHMNYAYVEGARIVQNLPDEAFVLRRSVPAHVKPTPAWLAYN---EALVADPARGDVLDKPDLYDPEIVF 206 (293)
T ss_pred CCCCChhhEecccccCCCCCCEEEccCCcccceeeecccCccCCchhhccch---HHHhhCchhhhhccCCCCCCccEEE
Confidence 999999999999999874333332 11 0110 1110000 0000000 001101112 2444
Q ss_pred ecC-------CCeEEEEeCCCCcEEEEEE--cCCCeEEEECCCccchhhhccCCCCCccceEEE-ccCcc----------
Q 017699 269 LST-------PTKIAILDHERKRTFVLRK--DGLPDAVVWNPWDKKAKAMADFGDDEYKHMLCV-EAACV---------- 328 (367)
Q Consensus 269 ~~~-------~~~~~l~d~~~g~~l~v~~--~~~~~~vvw~P~~~~~~~~~d~~~~~~~~fvCI-EP~~~---------- 328 (367)
... ...+.|..+..+ .+.+.. +.||++..|--.+. + ..-..+ ||.|.
T Consensus 207 ~~~~~~~~~~~~~~~l~n~~g~-~~~~~f~~~~lP~~~~W~~~~~----------~--~~v~~~~~PaT~~p~g~~~ar~ 273 (293)
T cd09269 207 FADDLGKYTGWAHFMMVHPDGD-AFYTRFSTAEFPYATRWILYNG----------D--QQVAAFALPATCRPEGYLAAKE 273 (293)
T ss_pred EeecccccCCcEEEEEECCCCC-EEEEEEchhhCChhheehhcCC----------C--cceEEEEccCCCCcCChHHHHH
Confidence 321 136788887655 565554 58999999973221 1 134455 49873
Q ss_pred -CCCeEeCCCCEEEEEEEE
Q 017699 329 -EKPIILKPGEEWRGRQEI 346 (367)
Q Consensus 329 -~~~~~L~PGe~~~~~~~i 346 (367)
..++.|+|||++++++++
T Consensus 274 ~G~l~~L~pGe~~~f~l~~ 292 (293)
T cd09269 274 AGTLRTLAPGETRRFSVTT 292 (293)
T ss_pred CCCcceeCCCCeEEEEEec
Confidence 257999999999887653
No 21
>PF14315 DUF4380: Domain of unknown function (DUF4380)
Probab=97.45 E-value=0.0051 Score=58.88 Aligned_cols=127 Identities=17% Similarity=0.136 Sum_probs=76.2
Q ss_pred eeEEEEEeCCceEEEEE-cCCeEEEEEEeCCCeEEEecCCc---cccC---CCCCcccCcceec--cc-CCCCC--CCCC
Q 017699 70 LEKVVLREVRGCSAEIY-LYGGQVISWKNEYGEELLFLSSK---ATFT---HPKPIRGGIPICF--PQ-FANHG--SLEK 137 (367)
Q Consensus 70 ~~~v~L~n~~g~~a~V~-~~Ga~l~s~~~~~g~evL~~~~~---~~~~---~~~~~rgG~PvlF--P~-~Gr~~--~l~~ 137 (367)
..+++|+|+. .++.|. ..||+|+++...+|.++|+.... .... ..-..+||- -+| |. .-|.. ..+.
T Consensus 4 ~~~~~l~N~~-i~l~Vtp~~GgRIl~~~~~g~~N~~~~~~~~~~~~~~~~~~~~~~~GGh-rlW~~Pe~~~r~~~~~~~P 81 (274)
T PF14315_consen 4 GNCLRLSNGD-IELIVTPDVGGRILSFGLNGGENLFGEANEIQPAPGVSGDSGWINYGGH-RLWPSPENPPRTSKWVWPP 81 (274)
T ss_pred ceEEEEECCC-EEEEEecCCCCEEEEEEeCCCceEEeeccccccccccCCcccccCCCcc-eeecCCCCccccccccCCC
Confidence 4789999996 999987 59999999988667778843321 1111 111222332 233 22 11100 0111
Q ss_pred CcccccCCeEEecCCCCCCCCCCCceEEEEEeccChhhhccCCeeeEEEEEEEEcCCC-eEEEEEEEEeCCCCCceEEEe
Q 017699 138 HGFARSRVWSIDPDPPPFSANSSSQACVDLILKHSEEEVKIWPHRYEFRLRITLGPGG-DLMLTSRIRNTNTDGKSFAFT 216 (367)
Q Consensus 138 HGfar~~~W~v~~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~~ytL~~~~-~L~i~~~v~N~n~~~~p~pf~ 216 (367)
--+..+.+|++... ...|+|.-..++. ..++++.+|+|.++. .++|+.+++|. ++.+.++.
T Consensus 82 d~~ld~~p~~~~~~----------~~~v~L~s~~~~~------tgiq~~~~i~l~~~~~~i~v~~~i~N~--~~~~~~~a 143 (274)
T PF14315_consen 82 DPVLDNGPYEVEID----------DDGVRLTSPPSPK------TGIQKERTITLDADRPSIEVTHRITNI--GDWPVEWA 143 (274)
T ss_pred cccccCCceeEEEc----------CCEEEEecCCCCc------cCcEEEEEEEECCCCCEEEEEEEEEeC--CCCcceee
Confidence 22334567777652 3456665443332 257899999998733 49999999999 88877654
No 22
>TIGR03593 yidC_nterm membrane protein insertase, YidC/Oxa1 family, N-terminal domain. Essentially all bacteria have a member of the YidC family, whose C-terminal domain is modeled by TIGR03592. The two copies are found in endospore-forming bacteria such as Bacillus subtilis appear redundant during vegetative growth, although the member designated spoIIIJ (stage III sporulation protein J) has a distinct role in spore formation. YidC, its mitochondrial homolog Oxa1, and its chloroplast homolog direct insertion into the bacterial/organellar inner (or only) membrane. This model describes an N-terminal sequence region, including a large periplasmic domain lacking in YidC members from Gram-positive species. The multifunctional YidC protein acts both with and independently of the Sec system.
Probab=93.80 E-value=2.3 Score=42.22 Aligned_cols=118 Identities=14% Similarity=0.140 Sum_probs=67.0
Q ss_pred eeEEEEEeCCceEEEEEcCCeEEEEEEeCCCe--------EE-EecCCccccCCCCCcccCcceecc-cCCCCCC-CCCC
Q 017699 70 LEKVVLREVRGCSAEIYLYGGQVISWKNEYGE--------EL-LFLSSKATFTHPKPIRGGIPICFP-QFANHGS-LEKH 138 (367)
Q Consensus 70 ~~~v~L~n~~g~~a~V~~~Ga~l~s~~~~~g~--------ev-L~~~~~~~~~~~~~~rgG~PvlFP-~~Gr~~~-l~~H 138 (367)
-+.++|+++. ++++|...||.|.++..++-+ .+ |.. +.. ...|+ ..|.+.. .+.-
T Consensus 73 ~~~i~v~td~-~~~~is~~Gg~i~~~~Lk~y~~~~~~~~~pv~L~~-~~~------------~~~y~~~~gl~~~~~~~~ 138 (366)
T TIGR03593 73 AKRITVKTDV-LRASISTKGGDIDSLELKKYKETLDKDSPPVLLLS-DGA------------ERLYVAQSGLIGANGADL 138 (366)
T ss_pred CCeEEEECCe-EEEEEeCCCceeeeeccccCccccCCCCCcEEeec-CCC------------CceeEEEeccccCCCCcc
Confidence 4579999995 999999999999999875211 12 111 110 11112 1121110 0100
Q ss_pred c-ccccCCeEEecCCCCCCCCCCCceEEEEEeccChhhhccCCeeeEEEEEEEEcCCC-eEEEEEEEEeCCCCCceEE
Q 017699 139 G-FARSRVWSIDPDPPPFSANSSSQACVDLILKHSEEEVKIWPHRYEFRLRITLGPGG-DLMLTSRIRNTNTDGKSFA 214 (367)
Q Consensus 139 G-far~~~W~v~~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~~ytL~~~~-~L~i~~~v~N~n~~~~p~p 214 (367)
. ...+..|+.....-.+ .++...|+|++...+ ...++.+|+|.++. .+.++++|+|. ++.+..
T Consensus 139 ~~~~~~~~~~~~~~~~~l---~~~~~~v~l~~~~~~--------G~~v~k~ytf~~~sY~i~v~~~v~N~--~~~~~~ 203 (366)
T TIGR03593 139 ALPGHRTVWQAEGGEYTL---TPGQLPVTLTWDNSN--------GVTVTKTYTFDRDSYLIDVEYKVTNN--GDAPVS 203 (366)
T ss_pred cCCCCCceEEeCCCceee---CCCCEEEEEEEECCC--------CeEEEEEEEEeCCeEEEEeEEEEEeC--CCCCee
Confidence 0 1335678876431000 123346777665422 47799999999732 67888888888 776554
No 23
>PF14849 YidC_periplas: YidC periplasmic domain; PDB: 3BS6_B 3BLC_B.
Probab=90.09 E-value=3.3 Score=39.00 Aligned_cols=122 Identities=9% Similarity=0.096 Sum_probs=54.4
Q ss_pred EEEEEeCCceEEEEEcCCeEEEEEEeCC--------CeEEEecCCccccCCCCCcccCcceecccCCCCCCCCCCccccc
Q 017699 72 KVVLREVRGCSAEIYLYGGQVISWKNEY--------GEELLFLSSKATFTHPKPIRGGIPICFPQFANHGSLEKHGFARS 143 (367)
Q Consensus 72 ~v~L~n~~g~~a~V~~~Ga~l~s~~~~~--------g~evL~~~~~~~~~~~~~~rgG~PvlFP~~Gr~~~l~~HGfar~ 143 (367)
.++|+|+. .++++...||.|.++..++ +.++-...+.. .........+.++..|+ . ..- .+
T Consensus 1 ~v~ven~~-~~~~~s~~GG~i~~~~Lk~y~~~~~~~~~pv~L~~~~~----~~~~~~~~~l~~~~~~~--~--~~~--~~ 69 (270)
T PF14849_consen 1 RVTVENDL-FKVTFSSKGGRIKSVELKKYKNTLDPDSKPVELVDDSD----EENYPLAFGLVFNTGGA--Q--LPT--ND 69 (270)
T ss_dssp -EEEE-SS--EEEEETBTTEEEEEEEEEEESSTT-SS-EEEECEEET----TEEEEEEEEEESTT--T--T--SGG--S-
T ss_pred CEEEECCC-EEEEEECCCCeEEEEEcCCCccccCCCCCceEEecCCC----CcceEEEEcccccCccc--c--CCC--cc
Confidence 37899996 9999999999999997631 11221111110 00000111111111111 0 111 45
Q ss_pred CCeEEecCCCCCCCCCCCceEEEEEeccChhhhccCCeeeEEEEEEEEcC-CCeEEEEEEEEeCCCCCceEEE
Q 017699 144 RVWSIDPDPPPFSANSSSQACVDLILKHSEEEVKIWPHRYEFRLRITLGP-GGDLMLTSRIRNTNTDGKSFAF 215 (367)
Q Consensus 144 ~~W~v~~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~~ytL~~-~~~L~i~~~v~N~n~~~~p~pf 215 (367)
..|++......+. +..+...|+|++...+ .+.++.+|+|.+ +-.+.++++++|. +..+...
T Consensus 70 ~~f~~~~~~~~l~-~~~~~~~vtf~~~~~~--------g~~i~k~ytf~~~~Y~~~~~i~~~n~--~~~~~~~ 131 (270)
T PF14849_consen 70 LYFSVSQKSYTLK-EGGDSQSVTFTAQLGN--------GLTITKTYTFKPDSYLVDLEISVTNL--SDQPVSL 131 (270)
T ss_dssp -B-B-S-SEEE---TT-SEEEEEEEEE-TT--------S-EEEEEEEEETT--EEEEEEEEE----SSS-EEE
T ss_pred ceEEEcCCceeec-cCCCceEEEEEEECCC--------CEEEEEEEEEcCCcEEEEEEEEEECC--CCCcccc
Confidence 6787765310000 0124567888776432 368999999985 2345566666676 7666555
No 24
>PRK01318 membrane protein insertase; Provisional
Probab=88.64 E-value=10 Score=39.68 Aligned_cols=120 Identities=14% Similarity=0.139 Sum_probs=62.9
Q ss_pred EEEEEeCCceEEEEEcCCeEEEEEEeCCC-------eEE-EecCCccccCCCCCcccCcceecccCCCCCC--CCCCccc
Q 017699 72 KVVLREVRGCSAEIYLYGGQVISWKNEYG-------EEL-LFLSSKATFTHPKPIRGGIPICFPQFANHGS--LEKHGFA 141 (367)
Q Consensus 72 ~v~L~n~~g~~a~V~~~Ga~l~s~~~~~g-------~ev-L~~~~~~~~~~~~~~rgG~PvlFP~~Gr~~~--l~~HGfa 141 (367)
.++|+++. .+++|.+.||.|.++..++- .++ |...... ..-+.-+=+.|.... ...++
T Consensus 40 ~i~v~td~-~~~~is~~Gg~i~~~~Lk~y~~~~~~~~p~~L~~~~~~---------~~y~~~~g~~~~~~~~~~~~~~-- 107 (521)
T PRK01318 40 RITVETDV-LRLSIDTKGGRIDDLLLKKYKETLDSSPPVVLLSPSTE---------HPYFAQSGLTGADGPDNVPNPD-- 107 (521)
T ss_pred EEEEEcCc-EEEEEECCCCeeeeeeccCCccccCCCCCEEEecCCCC---------cceeeeeccccCCCcccccCCC--
Confidence 79999996 99999999999999987521 112 1111100 000000111111000 01111
Q ss_pred ccCCeEEecCCCCCCCCCCCceEEEEEeccChhhhccCCeeeEEEEEEEEcCC-CeEEEEEEEEeCCCCCceEEE
Q 017699 142 RSRVWSIDPDPPPFSANSSSQACVDLILKHSEEEVKIWPHRYEFRLRITLGPG-GDLMLTSRIRNTNTDGKSFAF 215 (367)
Q Consensus 142 r~~~W~v~~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~~ytL~~~-~~L~i~~~v~N~n~~~~p~pf 215 (367)
+..|+........ .+.++...|+|++...+ .++++.+|+|.++ =.++++++|+|. +..++..
T Consensus 108 -~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~--------g~~~~k~yt~~~~~Y~~~~~~~v~n~--~~~~~~~ 170 (521)
T PRK01318 108 -RTLYTADGDSLVL-ADGQNELPVTLTWTNGN--------GLTFTKTYTLDRGDYMFTVEYSVNNN--SGAPVNL 170 (521)
T ss_pred -Ccceeecccceee-ccCCCceEEEEEEECCC--------CeEEEEEEEEcCCceEEEEEEEEEcC--CCCceee
Confidence 3567665221100 01124456777765321 4778999999872 236667777776 6665444
No 25
>PF09095 DUF1926: Domain of unknown function (DUF1926); InterPro: IPR015179 Alpha-amylase is classified as family 13 of the glycosyl hydrolases and is present in archaea, bacteria, plants and animals. Alpha-amylase is an essential enzyme in alpha-glucan metabolism, acting to catalyse the hydrolysis of alpha-1,4-glucosidic bonds of glycogen, starch and related polysaccharides. Although all alpha-amylases possess the same catalytic function, they can vary with respect to sequence. In general, they are composed of three domains: a TIM barrel containing the active site residues and chloride ion-binding site (domain A), a long loop region inserted between the third beta strand and the alpha-helix of domain A that contains calcium-binding site(s) (domain B), and a C-terminal beta-sheet domain that appears to show some variability in sequence and length between amylases (domain C) []. Amylases have at least one conserved calcium-binding site, as calcium is essential for the stability of the enzyme. The chloride-binding functions to activate the enzyme, which acts by a two-step mechanism involving a catalytic nucleophile base (usually an Asp) and a catalytic proton donor (usually a Glu) that are responsible for the formation of the beta-linked glycosyl-enzyme intermediate. This entry represents a domain found in prokaryotic alpha-amylase (3.2.1.1 from EC) and 4-alpha-glucanotransferase (2.4.1.25 from EC). This domain adopts a beta-sandwich fold, in which two layers of anti-parallel beta-sheets are arranged in a nearly parallel fashion. The exact function of this domain is, as yet, unknown, however it has been proposed that it may play a role in transglycosylation reactions []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process; PDB: 1K1X_B 1K1W_A 1K1Y_A.
Probab=88.12 E-value=8.7 Score=36.86 Aligned_cols=226 Identities=16% Similarity=0.261 Sum_probs=100.9
Q ss_pred ccCCeeEEEEEeCCceEEEEEcC-CeEEEEEEeC-CCeE---EEecCCccccCCC-----CCcccCcc------------
Q 017699 66 GVNGLEKVVLREVRGCSAEIYLY-GGQVISWKNE-YGEE---LLFLSSKATFTHP-----KPIRGGIP------------ 123 (367)
Q Consensus 66 ~~~g~~~v~L~n~~g~~a~V~~~-Ga~l~s~~~~-~g~e---vL~~~~~~~~~~~-----~~~rgG~P------------ 123 (367)
++.|.+.+.++++. +.+.|.+. ||.|..|-.. ...+ .|-.+.+.|-..- ...-.|+.
T Consensus 3 d~Dg~~E~~~~~~~-~~~~~~~~~gg~~~E~d~~~~~~N~~~tl~r~~E~Yh~~~~~~~~~~~~~gi~siH~~~~~~~~~ 81 (278)
T PF09095_consen 3 DFDGREEVLLQNES-LNAYFKPAYGGSLFELDVKRSAHNLLDTLTRRPEAYHEKIAAQQEESEGEGIASIHDRVKFKDEE 81 (278)
T ss_dssp SSSSS-EEEEE-SS-EEEEEETTTTTEEEEEEETTTTEETT--------GGG--------------------------HH
T ss_pred CCCCcceEEEECCc-EEEEEeeCCCcEEEEEcccCccccccccccCCCccccchhccccccCCCCCccchhhcccccCcc
Confidence 46799999999996 99999875 9999999874 2333 3332333332211 00001110
Q ss_pred ----eecccCCCCC----------------CC---CCCcccccCCeEEecCCCCCCCCCCCceEEEEEeccChhhhccCC
Q 017699 124 ----ICFPQFANHG----------------SL---EKHGFARSRVWSIDPDPPPFSANSSSQACVDLILKHSEEEVKIWP 180 (367)
Q Consensus 124 ----vlFP~~Gr~~----------------~l---~~HGfar~~~W~v~~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P 180 (367)
+.+=|.-|.. .. ..=-|+ +++|++.... +. |+|.-.. ...+
T Consensus 82 ~~~~l~yD~~~R~sf~Dhf~~~~~tle~~~~~~~~e~gDF~-~~~y~~~~~~--------~~--v~f~r~G-----~~~~ 145 (278)
T PF09095_consen 82 LKEDLVYDWYPRRSFIDHFLPPDTTLEDFIQGSFRELGDFA-NQPYELEVNR--------DE--VTFERDG-----GVEG 145 (278)
T ss_dssp HHTT----SS---EEEEEEE-TT--HHHHHTTTS---BS-S-SS--EEEEES--------SE--EEEEEEE-----EESE
T ss_pred ccccccCCCccCceeEEEecCCCCCHHHHhcCchhhhhhcc-CCceEEEecC--------Cc--eEEEEec-----cccc
Confidence 0111111100 00 122234 5788887653 12 5554321 1277
Q ss_pred eeeEEEEEEEEcCCCeEEEEEEEEeCCCCCceEEEeeeccceeec--CCcceEEEEccCCccccccCCccccccccCcee
Q 017699 181 HRYEFRLRITLGPGGDLMLTSRIRNTNTDGKSFAFTFAYHTYFAV--SDISEVRVEGLETLDYLDNLKDKERFTEQGDAI 258 (367)
Q Consensus 181 ~~f~l~~~ytL~~~~~L~i~~~v~N~n~~~~p~pf~~g~HpYF~~--~~~~~~~i~gl~~~~~ld~~~~~~~~~~~~~~~ 258 (367)
+++.++-+|+|.+ ++|.++|+|+ . ++.+..+-+|.=--|+. .+..+..+. .. ...
T Consensus 146 ~~~~l~K~y~l~~-~~l~V~Y~l~-~--~~~~~~~~f~vEiNla~~~~~~~~~~~~-----------~~--~~~------ 202 (278)
T PF09095_consen 146 HPITLEKRYRLTK-NGLQVDYRLT-E--SPEPISLLFGVEINLAMLSGDAPDRYFI-----------IG--SLG------ 202 (278)
T ss_dssp EEEEEEEEEEEET-TEEEEEEEEE----ESS---EEEEEEEEE----------------------------SS-------
T ss_pred CceEEEEEEEEcC-CEEEEEEEEE-E--CCCCcceEEEEEEeeccccccccccccc-----------cc--ccC------
Confidence 8999999999998 9999999999 5 55555444443333332 221111111 00 000
Q ss_pred ecCCCcCeeEecCCCeEEEEeCCCCcEEEEEEcCCCeEEEEC-CCccchhhhccCC--CCCccceEEEccCccCCCeEeC
Q 017699 259 TFESEVDKVYLSTPTKIAILDHERKRTFVLRKDGLPDAVVWN-PWDKKAKAMADFG--DDEYKHMLCVEAACVEKPIILK 335 (367)
Q Consensus 259 ~~~~~~D~vy~~~~~~~~l~d~~~g~~l~v~~~~~~~~vvw~-P~~~~~~~~~d~~--~~~~~~fvCIEP~~~~~~~~L~ 335 (367)
...+. + ...++.+.|+-.+..|.+..+. ..-+|. |-.. +.... -+...+.+|+-+.. ++.|+
T Consensus 203 ---~~~~~-~--~~~~i~l~D~~~~~~i~l~~~~--~~~~~~~Pi~T----vSqSE~Gfe~i~Qg~~~~~~~---~v~l~ 267 (278)
T PF09095_consen 203 ---EPIEE-F--EVKEIELEDEWLGGDITLEFSR--PAELWAFPIET----VSQSEKGFEKIYQGVALMFLW---PVSLN 267 (278)
T ss_dssp ------EE-E--EEEEEEEEETTTTEEEEEEEEE--EEEEEEEEEEE----EEEETTEEEEEEEEEEEEEEE---EE---
T ss_pred ---CCccc-c--ceEEEEEecCccCceEEEEECC--CceEEEeeEEe----EEcccCCceEEecceEEEEEE---EEecc
Confidence 00000 0 0134677777666777776531 334554 3110 00000 01123567777744 67799
Q ss_pred CCCEEEEEEEE
Q 017699 336 PGEEWRGRQEI 346 (367)
Q Consensus 336 PGe~~~~~~~i 346 (367)
||++|+.++++
T Consensus 268 ~~e~~~~ti~f 278 (278)
T PF09095_consen 268 PGEEWKTTIKF 278 (278)
T ss_dssp -SSEEEEEEEE
T ss_pred cCcEEEEEEEC
Confidence 99999977653
No 26
>COG0832 UreB Urea amidohydrolase (urease) beta subunit [Amino acid transport and metabolism]
Probab=52.19 E-value=18 Score=29.31 Aligned_cols=30 Identities=23% Similarity=0.379 Sum_probs=21.8
Q ss_pred EEEEcCCCeEEEEEEEEeCCCCCceEEEeeecc
Q 017699 188 RITLGPGGDLMLTSRIRNTNTDGKSFAFTFAYH 220 (367)
Q Consensus 188 ~ytL~~~~~L~i~~~v~N~n~~~~p~pf~~g~H 220 (367)
.++|.. ...+++++|.|+ ||.|+-++--+|
T Consensus 12 ~IelN~-gr~~~~i~V~Nt--GDRPIQVGSHfH 41 (106)
T COG0832 12 DIELNA-GRPTVTIEVANT--GDRPIQVGSHFH 41 (106)
T ss_pred cEEEeC-CCcceEEEEeec--CCCceEeeccee
Confidence 346666 678888899999 888776655444
No 27
>PF02929 Bgal_small_N: Beta galactosidase small chain; InterPro: IPR004199 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Beta-galactosidase enzymes (3.2.1.23 from EC) belong to several glycoside hydrolase families: GH1 from CAZY, GH2 from CAZY, GH35 from CAZY and GH42 from CAZY. Beta-galactosidase is the product of the lac operon Z gene of Escherichia coli. This enzyme catalyses the hydrolysis of the disaccharide lactose to galactose and glucose, and can also convert lactose to allolactose, the inducer of the lac operon. This domain is found in single chain beta-galactosidases, which are comprised of five domains. The active site is located in a deep pocket built around the central alpha-beta barrel, with the other domains conferring specificity for a disaccharide substrate. This entry represents domain 5 of glycoside hydrolase family 2, which contains an N-terminal loop that swings towards the active site upon the deep binding of a ligand to produce a closed conformation []. This domain is also found in the amino-terminal portion of the small chain of dimeric beta-galactosidases.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1JZ3_D 1JYY_H 1GHO_P 3VD9_B 3I3E_B 3T0B_A 3T09_C 1F4A_D 3VDC_C 3VDB_D ....
Probab=47.90 E-value=1.1e+02 Score=29.21 Aligned_cols=115 Identities=17% Similarity=0.204 Sum_probs=56.9
Q ss_pred EEEeCCceEEEEEcCCeEEEEEEeCCCeEEEecCC-ccccCCCCC-cccCcceecccCCCCCCCCCCcccc----cCCeE
Q 017699 74 VLREVRGCSAEIYLYGGQVISWKNEYGEELLFLSS-KATFTHPKP-IRGGIPICFPQFANHGSLEKHGFAR----SRVWS 147 (367)
Q Consensus 74 ~L~n~~g~~a~V~~~Ga~l~s~~~~~g~evL~~~~-~~~~~~~~~-~rgG~PvlFP~~Gr~~~l~~HGfar----~~~W~ 147 (367)
+|+.++ .++.+...-|.|.||+. +|+++|.... ...|..... =++.. .+. +.......|+-+ ...++
T Consensus 1 tV~g~~-f~~~Fdk~~G~l~s~~~-~g~~ll~~~~~~nfwRApTDND~~~~---~~~--~~~~W~~ag~~~~~~~~~~~~ 73 (276)
T PF02929_consen 1 TVSGKD-FSYVFDKKTGTLTSYKY-NGKELLKRGPKPNFWRAPTDNDRGIG---NPS--RAARWKDAGLDRLVTRVRSVK 73 (276)
T ss_dssp -EEETT-EEEEEETTTTCEEEEEE-TTEEEECEEEEEE---S--TCCCTTT---TSH--SCHHHHHTTTTCEEEEEEEEE
T ss_pred CCccCC-EEEEEECCCCeEEEEEE-CCEEeecCCCcccEEeCCCCCccccc---cch--hHHHHHHcCccceeeEEeEEE
Confidence 467774 89999988889999998 6888884322 222321000 00000 010 000001122221 11233
Q ss_pred EecCCCCCCCCCCCceEEEEEeccChhhhccCCeeeEEEEEEEEcCCCeEEEEEEEEeC
Q 017699 148 IDPDPPPFSANSSSQACVDLILKHSEEEVKIWPHRYEFRLRITLGPGGDLMLTSRIRNT 206 (367)
Q Consensus 148 v~~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~~ytL~~~~~L~i~~~v~N~ 206 (367)
+... +++..|++....... .=+..+.++++|++..+..+.|++++.-.
T Consensus 74 ~~~~--------~~~~~v~v~~~~~~~---~~~~~~~~~~~y~i~~dG~i~v~~~~~~~ 121 (276)
T PF02929_consen 74 VEES--------DGDVAVTVTARYAAP---NKSWNFEVTITYTIYADGTIKVDMTFEPS 121 (276)
T ss_dssp EEEE--------ESESEEEEEEEEEET---TCCEEEEEEEEEEEETTSEEEEEEEEEEE
T ss_pred EEec--------CCCceEEEEEEEeCC---CcceEEEEEEEEEEcCCCEEEEEEEEEeC
Confidence 3332 123333333322111 11223889999999987789999888655
No 28
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins.; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process
Probab=46.15 E-value=52 Score=25.52 Aligned_cols=38 Identities=26% Similarity=0.385 Sum_probs=27.6
Q ss_pred CeeeEEEEEEEEcCCCeEEEEEEEEeCCCCCceEEEeeeccce
Q 017699 180 PHRYEFRLRITLGPGGDLMLTSRIRNTNTDGKSFAFTFAYHTY 222 (367)
Q Consensus 180 P~~f~l~~~ytL~~~~~L~i~~~v~N~n~~~~p~pf~~g~HpY 222 (367)
|+.++++..|.-.. ..|.+ ++.|. +..+..|..--+.|
T Consensus 6 ~~~~~v~~~~~~~~-g~l~l--~l~N~--g~~~~~~~v~~~~y 43 (89)
T PF05506_consen 6 PYAPEVTARYDPAT-GNLRL--TLSNP--GSAAVTFTVYDNAY 43 (89)
T ss_pred CCCCEEEEEEECCC-CEEEE--EEEeC--CCCcEEEEEEeCCc
Confidence 56667777776665 45554 46688 99999999887766
No 29
>PRK13203 ureB urease subunit beta; Reviewed
Probab=43.38 E-value=32 Score=27.93 Aligned_cols=30 Identities=27% Similarity=0.361 Sum_probs=21.0
Q ss_pred EEEcCCCeEEEEEEEEeCCCCCceEEEeeecccee
Q 017699 189 ITLGPGGDLMLTSRIRNTNTDGKSFAFTFAYHTYF 223 (367)
Q Consensus 189 ytL~~~~~L~i~~~v~N~n~~~~p~pf~~g~HpYF 223 (367)
+.|.. +.=+++++|+|+ +|.|+-++ -|-+|
T Consensus 13 I~ln~-gr~~~~l~V~Nt--GDRPIQVG--SH~HF 42 (102)
T PRK13203 13 IELNA-GRETVTLTVANT--GDRPIQVG--SHYHF 42 (102)
T ss_pred EEeCC-CCCEEEEEEEeC--CCCceEEc--cccch
Confidence 35665 567788899999 88876665 45545
No 30
>PF00699 Urease_beta: Urease beta subunit CAUTION: The Prosite patterns do not match this subunit of the enzyme; InterPro: IPR002019 Urease 3.5.1.5 from EC is a nickel-binding enzyme that catalyzes the hydrolysis of urea to carbon dioxide and ammonia []: Urea + H2O = CO2 + 2 NH3 Historically, it was the first enzyme to be crystallized (in 1926). It is mainly found in plant seeds and microorganisms. In plants, urease is a hexamer of identical chains. In bacteria [], it consists of either two or three different subunits (alpha IPR005847 from INTERPRO, beta, described in this entry, and gamma IPR002026 from INTERPRO). The structure of the urease complex is known []. This subunit does not appear to take part in the catalytic mechanism. This subunit is known (confusingly) as alpha in Helicobacter.; GO: 0009039 urease activity, 0016151 nickel ion binding, 0006807 nitrogen compound metabolic process; PDB: 1EJS_B 1EJW_B 1A5N_B 1A5K_B 1A5M_B 1EJR_B 1EJX_B 1A5L_B 1KRB_B 1FWA_B ....
Probab=43.06 E-value=31 Score=27.91 Aligned_cols=31 Identities=26% Similarity=0.352 Sum_probs=19.9
Q ss_pred EEEcCCCeEEEEEEEEeCCCCCceEEEeeeccceee
Q 017699 189 ITLGPGGDLMLTSRIRNTNTDGKSFAFTFAYHTYFA 224 (367)
Q Consensus 189 ytL~~~~~L~i~~~v~N~n~~~~p~pf~~g~HpYF~ 224 (367)
+.|.. +.=+++++|+|+ +|.|+-+ |-|-+|.
T Consensus 12 I~lN~-gr~~~~l~V~N~--GDRPIQV--GSH~HF~ 42 (100)
T PF00699_consen 12 IELNA-GRERITLEVTNT--GDRPIQV--GSHYHFF 42 (100)
T ss_dssp EETTT-TSEEEEEEEEE---SSS-EEE--ETTS-GG
T ss_pred EEecC-CCcEEEEEEEeC--CCcceEE--ccccCHH
Confidence 45666 677889999999 8877665 4555553
No 31
>cd00407 Urease_beta Urease beta-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide. Nickel-dependent ureases are found in bacteria, archaea, fungi and plants. Their primary role is to allow the use of external and internally-generated urea as a nitrogen source. The enzyme consists of three subunits, alpha, beta and gamma, which can exist as separate proteins or can be fused on a single protein chain. The alpha-beta-gamma heterotrimer forms multimers, mainly trimers. The large alpha subunit is the catalytic domain containing an active site with a bi-nickel center complexed by a carbamylated lysine. The beta and gamma subunits play a role in subunit association to form the higher order trimers.
Probab=42.92 E-value=33 Score=27.85 Aligned_cols=30 Identities=27% Similarity=0.429 Sum_probs=21.1
Q ss_pred EEEcCCCeEEEEEEEEeCCCCCceEEEeeecccee
Q 017699 189 ITLGPGGDLMLTSRIRNTNTDGKSFAFTFAYHTYF 223 (367)
Q Consensus 189 ytL~~~~~L~i~~~v~N~n~~~~p~pf~~g~HpYF 223 (367)
+.|.. +.=+++++|+|+ +|.|+-++ -|-+|
T Consensus 13 I~lN~-gr~~~~l~V~Nt--GDRpIQVG--SH~HF 42 (101)
T cd00407 13 IELNA-GREAVTLKVKNT--GDRPIQVG--SHYHF 42 (101)
T ss_pred eEeCC-CCCEEEEEEEeC--CCcceEEc--cccch
Confidence 35665 667788899999 88776655 45555
No 32
>TIGR00192 urease_beta urease, beta subunit. In a number of species, including B.subtilis, Synechocystis, and Haemophilus influenzae, urease subunits beta and gamma are encoded as separate polypeptides. In Helicobacter pylori UreA and in the fission yeast Schizosaccharomyces pombe, beta subunit-like sequence follows gamma subunit-like sequence in a single chain; the fission yeast protein contains additional C-terminal regions.
Probab=42.57 E-value=35 Score=27.66 Aligned_cols=30 Identities=23% Similarity=0.442 Sum_probs=21.1
Q ss_pred EEEcCCCeEEEEEEEEeCCCCCceEEEeeecccee
Q 017699 189 ITLGPGGDLMLTSRIRNTNTDGKSFAFTFAYHTYF 223 (367)
Q Consensus 189 ytL~~~~~L~i~~~v~N~n~~~~p~pf~~g~HpYF 223 (367)
+.|.. +.=+++++|+|+ +|.|+-++ -|-+|
T Consensus 13 I~ln~-gr~~~~l~V~Nt--GDRPIQVG--SHyHF 42 (101)
T TIGR00192 13 ITINE-GRKTVSVKVKNT--GDRPIQVG--SHFHF 42 (101)
T ss_pred EEeCC-CCcEEEEEEEeC--CCcceEEc--cccch
Confidence 45666 667788999999 88776655 45555
No 33
>PRK13201 ureB urease subunit beta; Reviewed
Probab=35.97 E-value=47 Score=28.31 Aligned_cols=29 Identities=10% Similarity=0.205 Sum_probs=20.5
Q ss_pred EEEcCCCeEEEEEEEEeCCCCCceEEEeeecc
Q 017699 189 ITLGPGGDLMLTSRIRNTNTDGKSFAFTFAYH 220 (367)
Q Consensus 189 ytL~~~~~L~i~~~v~N~n~~~~p~pf~~g~H 220 (367)
+.|.. +.=++++.|+|+ +|.|+-++-=+|
T Consensus 13 I~lN~-gr~~~~l~V~Nt--GDRPIQVGSHyH 41 (136)
T PRK13201 13 VEINN-HHPETVIEVENT--GDRPIQVGSHFH 41 (136)
T ss_pred eEeCC-CCCEEEEEEEeC--CCcceEeccccc
Confidence 45665 567788899999 888766654444
No 34
>PRK13202 ureB urease subunit beta; Reviewed
Probab=35.39 E-value=53 Score=26.75 Aligned_cols=30 Identities=20% Similarity=0.259 Sum_probs=20.3
Q ss_pred EEEcCCCe-EEEEEEEEeCCCCCceEEEeeecccee
Q 017699 189 ITLGPGGD-LMLTSRIRNTNTDGKSFAFTFAYHTYF 223 (367)
Q Consensus 189 ytL~~~~~-L~i~~~v~N~n~~~~p~pf~~g~HpYF 223 (367)
+.|.. +. =+++++|+|+ +|.|+-++ -|-+|
T Consensus 13 I~ln~-grr~~~~l~V~Nt--GDRPIQVG--SHyHF 43 (104)
T PRK13202 13 IEMNA-AALSRLQMRIINA--GDRPVQVG--SHVHL 43 (104)
T ss_pred EEeCC-CCCceEEEEEEeC--CCCceEEc--cccch
Confidence 45665 43 5678889999 88876655 45555
No 35
>PRK13205 ureB urease subunit beta; Reviewed
Probab=34.69 E-value=49 Score=28.83 Aligned_cols=30 Identities=27% Similarity=0.213 Sum_probs=21.3
Q ss_pred EEEcCCCeEEEEEEEEeCCCCCceEEEeeecccee
Q 017699 189 ITLGPGGDLMLTSRIRNTNTDGKSFAFTFAYHTYF 223 (367)
Q Consensus 189 ytL~~~~~L~i~~~v~N~n~~~~p~pf~~g~HpYF 223 (367)
+.|.. +.=+++++|+|+ +|.|+-++ -|-+|
T Consensus 13 IelN~-GR~~i~L~V~Nt--GDRPIQVG--SHyHF 42 (162)
T PRK13205 13 LTGNV-GREAKTIEIINT--GDRPVQIG--SHFHF 42 (162)
T ss_pred eEeCC-CCcEEEEEEEeC--CCCceEec--cccch
Confidence 45666 667788999999 88876665 45555
No 36
>PRK13204 ureB urease subunit beta; Reviewed
Probab=33.64 E-value=53 Score=28.69 Aligned_cols=42 Identities=21% Similarity=0.188 Sum_probs=26.2
Q ss_pred ccCCeeeEEE-EEEEEcCCCeEEEEEEEEeCCCCCceEEEeeecccee
Q 017699 177 KIWPHRYEFR-LRITLGPGGDLMLTSRIRNTNTDGKSFAFTFAYHTYF 223 (367)
Q Consensus 177 ~~~P~~f~l~-~~ytL~~~~~L~i~~~v~N~n~~~~p~pf~~g~HpYF 223 (367)
..-|..+.+. -.+.|.. +.=+++++|+|+ +|.|+-++- |-+|
T Consensus 23 ~~~pGei~~~~~~I~lN~-gr~~~~l~V~Nt--GDRPIQVGS--HyHF 65 (159)
T PRK13204 23 HRPVGGYVLAKDPIEINQ-GRPRTTLTVRNT--GDRPIQIGS--HFHF 65 (159)
T ss_pred cCCCCeEEeCCCCeEeCC-CCcEEEEEEEeC--CCCceEecc--ccch
Confidence 3344443322 2356776 667788999999 888766654 5445
No 37
>PRK13198 ureB urease subunit beta; Reviewed
Probab=33.51 E-value=53 Score=28.65 Aligned_cols=41 Identities=15% Similarity=0.178 Sum_probs=26.0
Q ss_pred ccCCeeeEEE-EEEEEcCCCeEEEEEEEEeCCCCCceEEEeeecc
Q 017699 177 KIWPHRYEFR-LRITLGPGGDLMLTSRIRNTNTDGKSFAFTFAYH 220 (367)
Q Consensus 177 ~~~P~~f~l~-~~ytL~~~~~L~i~~~v~N~n~~~~p~pf~~g~H 220 (367)
..-|..+.+. -.+.|.. +.=++++.|+|+ ||.|+-++-=+|
T Consensus 28 ~~~pGei~~~~g~I~lN~-gr~~~~l~V~Nt--GDRPIQVGSHyH 69 (158)
T PRK13198 28 NTPLGGLVLAETPITFNE-NKPVTKVKVRNT--GDRPIQVGSHFH 69 (158)
T ss_pred cCCCceEEeCCCCeEeCC-CCcEEEEEEEeC--CCCceEeccccc
Confidence 3445543332 2356776 667788999999 888776654444
No 38
>KOG4701 consensus Chitinase [Cell wall/membrane/envelope biogenesis]
Probab=31.92 E-value=26 Score=35.10 Aligned_cols=48 Identities=25% Similarity=0.234 Sum_probs=37.6
Q ss_pred eeeecCCCCCCCCCCcccCceeeecccceeccCCchhhhhcccCccCC
Q 017699 10 SLSLSPSGSGIKPGARFDSSISVRSSTTSTATSTASAAETNMNSPCRE 57 (367)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 57 (367)
+.++-|+..-++|+..++-|+++++|...+.-++++-+..||+.++--
T Consensus 457 ~~~~~~~sss~~~~sst~~ss~ss~s~~~ss~st~~~~~~e~~~~~~~ 504 (568)
T KOG4701|consen 457 SSVSVPSSSSVQPQSSTPISSSSSASSPQSTLSTSSEVVSEVSSTLLS 504 (568)
T ss_pred eeeeccccccccCCCcccccCCccCCCCcccchhHHHHHHHHHHHHhc
Confidence 356778899999999988877777777777777888888888866544
No 39
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=26.76 E-value=9.6e+02 Score=27.53 Aligned_cols=114 Identities=11% Similarity=0.130 Sum_probs=60.8
Q ss_pred EEEEEeCCceEEEEEcCCeEEEEEEeCCCeEEEecCC-ccccCCCCCcccCcceecccCCCCCCCCCCcc----cccCCe
Q 017699 72 KVVLREVRGCSAEIYLYGGQVISWKNEYGEELLFLSS-KATFTHPKPIRGGIPICFPQFANHGSLEKHGF----ARSRVW 146 (367)
Q Consensus 72 ~v~L~n~~g~~a~V~~~Ga~l~s~~~~~g~evL~~~~-~~~~~~~~~~rgG~PvlFP~~Gr~~~l~~HGf----ar~~~W 146 (367)
.+.|+.++ .++++...=|.|.+|+. +|+++|.... ...|... ...-.+ .... ....-|+ .+...|
T Consensus 725 ~~~i~~~~-~~~~fdk~tG~l~s~~~-~g~~ll~~~~~~nfwRAp--tDND~~----~~~~--~W~~ag~~~l~~~~~~~ 794 (1021)
T PRK10340 725 SCTVRGYN-FAITFSKVSGKLTSWQV-NGESLLTREPKINFFKPM--IDNHKQ----EYEG--LWQPNHLQIMQEHLRDF 794 (1021)
T ss_pred EEEEEeCC-EEEEEECCcceEEEEEe-CCeeeecCCCccceEeCC--ccCCcc----hhhH--HHHHcCCccceeEEEEE
Confidence 46677764 88889888889999998 6888885442 2334311 101000 0000 0011111 111234
Q ss_pred EEecCCCCCCCCCCCceEEEEEeccChhhhccCCeeeEEEEEEEEcCCCeEEEEEEEEeC
Q 017699 147 SIDPDPPPFSANSSSQACVDLILKHSEEEVKIWPHRYEFRLRITLGPGGDLMLTSRIRNT 206 (367)
Q Consensus 147 ~v~~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~~ytL~~~~~L~i~~~v~N~ 206 (367)
++... ++...|+..+..... ... +.++++++|++..+..|.|++++.-.
T Consensus 795 ~~~~~--------~~~v~v~~~~~~~~~-~~~--~~~~~~~~y~i~~~G~i~v~~~~~~~ 843 (1021)
T PRK10340 795 AVEQS--------DGEVLIISRTVIAPP-VFD--FGMRCTYIYRIAADGQVNVALSGERY 843 (1021)
T ss_pred EEEeC--------CCeEEEEEEEEecCC-ccc--ceeEEEEEEEEcCCCEEEEEEEEEEC
Confidence 44432 233444444432211 111 23679999999887889999888644
No 40
>KOG2130 consensus Phosphatidylserine-specific receptor PtdSerR, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=24.29 E-value=37 Score=33.29 Aligned_cols=28 Identities=29% Similarity=0.337 Sum_probs=15.9
Q ss_pred CCCCcccCceeeecccceeccCCchhhh
Q 017699 21 KPGARFDSSISVRSSTTSTATSTASAAE 48 (367)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 48 (367)
++-..+.|++|+.||++|+++++.|-++
T Consensus 341 ~e~~~~~~~sss~ssssssss~~~s~e~ 368 (407)
T KOG2130|consen 341 EESTGLASDSSSDSSSSSSSSSSSSDEE 368 (407)
T ss_pred ccccCcccccccccccccccCCCCCccc
Confidence 3445566666666666665555555443
No 41
>PRK13192 bifunctional urease subunit gamma/beta; Reviewed
Probab=23.24 E-value=90 Score=28.59 Aligned_cols=41 Identities=22% Similarity=0.271 Sum_probs=26.6
Q ss_pred cCCeeeEEE-EEEEEcCCCeEEEEEEEEeCCCCCceEEEeeecccee
Q 017699 178 IWPHRYEFR-LRITLGPGGDLMLTSRIRNTNTDGKSFAFTFAYHTYF 223 (367)
Q Consensus 178 ~~P~~f~l~-~~ytL~~~~~L~i~~~v~N~n~~~~p~pf~~g~HpYF 223 (367)
.+|..+.+. -.+.|.. +.=+++++|+|+ ||.|+-++- |-+|
T Consensus 110 l~PGei~~~~~~I~lN~-gr~~~~l~V~Nt--GDRPIQVGS--HyHF 151 (208)
T PRK13192 110 LYPGEILPGDGEIELNA-GRPAVTLDVTNT--GDRPIQVGS--HFHF 151 (208)
T ss_pred cCCCEEEcCCCCeeeCC-CCCEEEEEEEeC--CCCceeecc--ccch
Confidence 356654432 2356776 667788999999 888766654 5445
No 42
>cd01615 CIDE_N CIDE_N domain, found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins, as well as CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of ICAD/DFF45, and the CAD/DFF40 and CIDE nucleases during apoptosis. The CIDE-N domain is also found in the FSP27/CIDE-C protein.
Probab=23.12 E-value=25 Score=27.23 Aligned_cols=21 Identities=24% Similarity=0.639 Sum_probs=17.3
Q ss_pred ceEEEccCccCCCeEeCCCCEEE
Q 017699 319 HMLCVEAACVEKPIILKPGEEWR 341 (367)
Q Consensus 319 ~fvCIEP~~~~~~~~L~PGe~~~ 341 (367)
.|-|+++.+. .++|.|||.|.
T Consensus 57 YF~tLp~nT~--l~~l~~gq~W~ 77 (78)
T cd01615 57 YFQTLPDNTV--LMLLEPGQKWT 77 (78)
T ss_pred HHhcCCCCcE--EEEECCCCCcC
Confidence 3888888774 78999999995
No 43
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=21.83 E-value=1.2e+02 Score=23.40 Aligned_cols=19 Identities=16% Similarity=0.371 Sum_probs=13.4
Q ss_pred EEEEEEEEeCCCCCceEEEee
Q 017699 197 LMLTSRIRNTNTDGKSFAFTF 217 (367)
Q Consensus 197 L~i~~~v~N~n~~~~p~pf~~ 217 (367)
+.++++|+|. ++++..+.+
T Consensus 2 v~~~l~v~N~--s~~~v~l~f 20 (82)
T PF12690_consen 2 VEFTLTVTNN--SDEPVTLQF 20 (82)
T ss_dssp EEEEEEEEE---SSS-EEEEE
T ss_pred EEEEEEEEeC--CCCeEEEEe
Confidence 6788899999 888877653
No 44
>cd06535 CIDE_N_CAD CIDE_N domain of CAD nuclease. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of CAD/DFF40 and ICAD/DFF45 during apoptosis. In normal cells, DFF exists in the nucleus as a heterodimer composed of CAD/DFF40 as a latent nuclease and its chaperone and inhibitor subunit ICAD/DFF45. Apoptotic activation of caspase-3 results in the cleavage of DFF45/ICAD and the release of active DFF40/CAD nuclease.
Probab=21.24 E-value=31 Score=26.66 Aligned_cols=22 Identities=23% Similarity=0.622 Sum_probs=17.4
Q ss_pred ceEEEccCccCCCeEeCCCCEEEE
Q 017699 319 HMLCVEAACVEKPIILKPGEEWRG 342 (367)
Q Consensus 319 ~fvCIEP~~~~~~~~L~PGe~~~~ 342 (367)
.|-|+++.+. .++|.|||.|++
T Consensus 56 yF~tLp~nT~--lmvL~~gq~W~g 77 (77)
T cd06535 56 YFPTLPDNTE--LVLLTPGQSWQG 77 (77)
T ss_pred HHhcCCCCcE--EEEEcCCCccCC
Confidence 4778888764 789999999974
No 45
>PRK13986 urease subunit alpha; Provisional
Probab=20.39 E-value=1.1e+02 Score=28.48 Aligned_cols=41 Identities=17% Similarity=0.338 Sum_probs=25.9
Q ss_pred cCCeeeEEE-EEEEEcCCCeEEEEEEEEeCCCCCceEEEeeecccee
Q 017699 178 IWPHRYEFR-LRITLGPGGDLMLTSRIRNTNTDGKSFAFTFAYHTYF 223 (367)
Q Consensus 178 ~~P~~f~l~-~~ytL~~~~~L~i~~~v~N~n~~~~p~pf~~g~HpYF 223 (367)
.-|..+.+. -.+.|.. +.=+++++|+|+ ||.|+-++- |-+|
T Consensus 106 ~~PGe~~~~~~~I~lN~-gr~~~~l~V~Nt--GDRPIQVGS--HyHF 147 (225)
T PRK13986 106 LVPGELFLKDEDITINA-GKKAVSVKVKNV--GDRPVQVGS--HFHF 147 (225)
T ss_pred CCCceEecCCCCeecCC-CCcEEEEEEEeC--CCCceeecc--ccch
Confidence 445543332 2356776 667788999999 888776654 5445
Done!