Query 017700
Match_columns 367
No_of_seqs 159 out of 1453
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 02:40:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017700.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017700hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0667 Tas Predicted oxidored 100.0 9.9E-63 2.1E-67 466.3 32.5 296 39-356 1-312 (316)
2 KOG1575 Voltage-gated shaker-l 100.0 2E-62 4.4E-67 455.7 31.4 309 32-357 5-329 (336)
3 COG0656 ARA1 Aldo/keto reducta 100.0 2.2E-60 4.7E-65 434.5 27.7 263 39-356 3-267 (280)
4 PRK10625 tas putative aldo-ket 100.0 2.4E-58 5.3E-63 444.0 33.9 305 39-355 1-341 (346)
5 PRK09912 L-glyceraldehyde 3-ph 100.0 4.2E-58 9.1E-63 441.9 34.6 303 37-354 11-334 (346)
6 TIGR01293 Kv_beta voltage-depe 100.0 3.4E-58 7.4E-63 437.9 32.7 294 41-351 1-316 (317)
7 PLN02587 L-galactose dehydroge 100.0 2.4E-56 5.2E-61 424.8 31.4 292 41-355 1-302 (314)
8 PRK10376 putative oxidoreducta 100.0 2.2E-54 4.7E-59 406.7 31.9 270 41-354 9-289 (290)
9 KOG1577 Aldo/keto reductase fa 100.0 1.8E-54 3.9E-59 395.5 25.6 268 41-356 6-288 (300)
10 cd06660 Aldo_ket_red Aldo-keto 100.0 2.2E-53 4.7E-58 399.2 32.0 277 41-350 1-284 (285)
11 PRK11172 dkgB 2,5-diketo-D-glu 100.0 1.6E-53 3.4E-58 396.3 29.3 251 48-354 2-253 (267)
12 PF00248 Aldo_ket_red: Aldo/ke 100.0 9E-54 1.9E-58 401.4 27.2 277 51-352 1-282 (283)
13 PRK11565 dkgA 2,5-diketo-D-glu 100.0 8.2E-52 1.8E-56 386.1 29.1 258 41-355 6-264 (275)
14 COG4989 Predicted oxidoreducta 100.0 4.6E-52 1E-56 364.1 22.0 278 39-353 1-293 (298)
15 PRK14863 bifunctional regulato 100.0 1.4E-51 3.1E-56 387.2 24.5 273 46-350 2-279 (292)
16 COG1453 Predicted oxidoreducta 100.0 7.2E-47 1.6E-51 348.9 23.9 276 39-356 1-288 (391)
17 KOG1576 Predicted oxidoreducta 100.0 3E-45 6.5E-50 323.4 23.2 280 36-343 19-311 (342)
18 KOG3023 Glutamate-cysteine lig 98.0 2.1E-05 4.5E-10 69.9 6.9 72 178-254 156-227 (285)
19 PF07021 MetW: Methionine bios 88.5 16 0.00036 32.0 14.0 153 77-260 5-172 (193)
20 cd03319 L-Ala-DL-Glu_epimerase 88.5 21 0.00046 33.8 15.1 157 71-259 134-291 (316)
21 PRK13796 GTPase YqeH; Provisio 84.3 21 0.00046 34.7 12.8 139 51-206 35-176 (365)
22 PRK07945 hypothetical protein; 82.6 47 0.001 31.9 15.3 162 73-251 111-288 (335)
23 PRK13361 molybdenum cofactor b 82.0 49 0.0011 31.6 16.8 134 68-220 43-186 (329)
24 PRK10558 alpha-dehydro-beta-de 80.8 22 0.00049 32.7 10.9 105 182-338 8-115 (256)
25 KOG0259 Tyrosine aminotransfer 80.8 59 0.0013 31.8 16.2 57 72-133 80-136 (447)
26 PRK08609 hypothetical protein; 80.2 43 0.00093 34.7 13.8 159 75-251 351-522 (570)
27 PF03102 NeuB: NeuB family; I 80.0 25 0.00055 32.1 10.8 139 69-229 52-204 (241)
28 COG1748 LYS9 Saccharopine dehy 78.5 20 0.00044 35.2 10.2 81 73-171 79-159 (389)
29 PRK06740 histidinol-phosphatas 78.5 45 0.00098 32.0 12.6 105 146-252 156-289 (331)
30 PRK10128 2-keto-3-deoxy-L-rham 78.4 32 0.00069 32.0 11.1 104 183-338 8-114 (267)
31 PF00682 HMGL-like: HMGL-like 77.1 55 0.0012 29.4 15.5 170 70-259 11-195 (237)
32 KOG0023 Alcohol dehydrogenase, 75.3 9.9 0.00021 36.2 6.7 150 37-250 172-324 (360)
33 TIGR03239 GarL 2-dehydro-3-deo 74.5 40 0.00088 30.9 10.6 75 216-338 32-108 (249)
34 cd03174 DRE_TIM_metallolyase D 71.6 50 0.0011 30.0 10.7 106 139-254 16-135 (265)
35 PRK00164 moaA molybdenum cofac 71.4 95 0.0021 29.5 18.4 165 68-252 47-228 (331)
36 PRK07329 hypothetical protein; 69.6 89 0.0019 28.4 12.1 107 145-253 82-214 (246)
37 TIGR01856 hisJ_fam histidinol 67.4 90 0.0019 28.5 11.4 174 73-252 15-234 (253)
38 TIGR02311 HpaI 2,4-dihydroxyhe 67.3 61 0.0013 29.7 10.1 102 184-338 3-108 (249)
39 PRK13958 N-(5'-phosphoribosyl) 67.0 22 0.00047 31.7 6.9 74 140-228 10-84 (207)
40 COG2089 SpsE Sialic acid synth 66.2 1.3E+02 0.0027 28.9 12.1 139 69-229 86-238 (347)
41 PRK09856 fructoselysine 3-epim 66.1 85 0.0018 28.7 11.1 19 238-256 94-112 (275)
42 COG1121 ZnuC ABC-type Mn/Zn tr 65.7 30 0.00065 31.9 7.6 65 140-207 113-203 (254)
43 PRK07328 histidinol-phosphatas 65.6 78 0.0017 29.2 10.7 170 74-252 19-226 (269)
44 cd01965 Nitrogenase_MoFe_beta_ 65.3 1.3E+02 0.0029 29.8 12.9 113 106-222 66-187 (428)
45 TIGR02666 moaA molybdenum cofa 64.6 1.3E+02 0.0029 28.6 16.6 134 68-220 41-185 (334)
46 PRK12323 DNA polymerase III su 62.7 1.8E+02 0.0038 30.9 13.3 96 140-249 105-202 (700)
47 COG2102 Predicted ATPases of P 62.6 74 0.0016 28.6 9.2 103 176-305 74-177 (223)
48 TIGR01278 DPOR_BchB light-inde 62.3 1.3E+02 0.0027 30.8 12.3 106 106-220 70-191 (511)
49 COG4152 ABC-type uncharacteriz 62.2 55 0.0012 30.2 8.4 72 139-212 102-199 (300)
50 KOG0369 Pyruvate carboxylase [ 62.0 45 0.00097 35.0 8.6 148 73-259 43-196 (1176)
51 PRK12360 4-hydroxy-3-methylbut 61.8 58 0.0013 30.5 8.9 110 191-333 157-274 (281)
52 cd07944 DRE_TIM_HOA_like 4-hyd 61.5 91 0.002 28.8 10.2 111 137-253 15-128 (266)
53 KOG0059 Lipid exporter ABCA1 a 61.3 37 0.0008 37.3 8.7 73 138-212 669-767 (885)
54 PRK01045 ispH 4-hydroxy-3-meth 60.5 63 0.0014 30.5 8.9 112 191-333 156-275 (298)
55 cd00954 NAL N-Acetylneuraminic 60.2 1.3E+02 0.0028 28.1 11.1 117 137-259 16-141 (288)
56 cd00739 DHPS DHPS subgroup of 60.1 1.4E+02 0.0031 27.4 14.2 104 140-255 22-128 (257)
57 PRK08392 hypothetical protein; 59.8 1.3E+02 0.0027 26.7 18.8 155 74-252 15-179 (215)
58 PRK04452 acetyl-CoA decarbonyl 59.7 1.7E+02 0.0036 28.1 12.7 98 150-256 83-184 (319)
59 cd03316 MR_like Mandelate race 59.1 1.7E+02 0.0037 28.0 13.4 158 71-255 139-299 (357)
60 KOG1549 Cysteine desulfurase N 58.5 87 0.0019 31.1 9.7 164 73-260 57-224 (428)
61 cd03315 MLE_like Muconate lact 58.2 1.5E+02 0.0032 27.1 15.7 156 71-259 85-243 (265)
62 cd01966 Nitrogenase_NifN_1 Nit 58.2 2E+02 0.0043 28.5 13.2 116 94-220 61-187 (417)
63 TIGR01496 DHPS dihydropteroate 58.2 1.5E+02 0.0033 27.2 14.0 101 140-254 21-125 (257)
64 PRK05588 histidinol-phosphatas 58.1 1.5E+02 0.0032 27.0 16.3 166 73-253 16-215 (255)
65 TIGR03597 GTPase_YqeH ribosome 57.9 1.9E+02 0.004 28.1 12.7 141 50-207 28-171 (360)
66 PRK07003 DNA polymerase III su 57.9 2.8E+02 0.006 30.1 18.4 96 140-249 100-197 (830)
67 TIGR03569 NeuB_NnaB N-acetylne 57.6 1.4E+02 0.0031 28.6 11.0 142 69-230 72-227 (329)
68 TIGR00216 ispH_lytB (E)-4-hydr 56.6 67 0.0015 30.1 8.4 120 183-333 146-273 (280)
69 COG4555 NatA ABC-type Na+ tran 56.3 54 0.0012 29.4 7.2 72 138-211 104-201 (245)
70 COG0329 DapA Dihydrodipicolina 56.3 1.2E+02 0.0026 28.6 10.2 118 138-259 21-143 (299)
71 PF00682 HMGL-like: HMGL-like 56.0 1.5E+02 0.0033 26.5 11.0 102 140-250 12-124 (237)
72 PRK14476 nitrogenase molybdenu 55.9 2E+02 0.0044 28.9 12.3 117 93-220 71-198 (455)
73 PRK14464 ribosomal RNA large s 55.8 2E+02 0.0043 27.8 11.7 82 177-260 225-319 (344)
74 TIGR02026 BchE magnesium-proto 55.5 1.9E+02 0.0042 29.3 12.3 22 178-199 225-246 (497)
75 TIGR02370 pyl_corrinoid methyl 55.4 1E+02 0.0023 27.0 9.1 151 70-248 9-164 (197)
76 PRK15408 autoinducer 2-binding 55.2 1.9E+02 0.0041 27.6 11.6 91 121-223 21-111 (336)
77 PRK07764 DNA polymerase III su 55.2 3.2E+02 0.0068 29.9 14.2 97 140-250 101-199 (824)
78 COG1140 NarY Nitrate reductase 54.9 5.9 0.00013 38.2 1.1 55 190-249 263-317 (513)
79 PRK01222 N-(5'-phosphoribosyl) 54.4 37 0.00081 30.2 6.2 81 130-228 5-86 (210)
80 KOG1321 Protoheme ferro-lyase 53.9 2.1E+02 0.0045 27.4 12.2 152 182-354 144-323 (395)
81 PF05690 ThiG: Thiazole biosyn 52.9 54 0.0012 29.8 6.7 116 50-194 9-126 (247)
82 TIGR03849 arch_ComA phosphosul 52.8 87 0.0019 28.5 8.2 198 145-357 11-231 (237)
83 cd00308 enolase_like Enolase-s 51.3 1E+02 0.0022 27.5 8.6 74 181-259 134-208 (229)
84 PRK13753 dihydropteroate synth 51.2 2.1E+02 0.0046 26.8 11.9 104 140-257 23-129 (279)
85 cd03321 mandelate_racemase Man 51.0 2.3E+02 0.0051 27.2 12.9 152 72-253 142-294 (355)
86 cd01973 Nitrogenase_VFe_beta_l 50.8 2.7E+02 0.0059 27.9 13.6 115 92-220 64-191 (454)
87 PRK13209 L-xylulose 5-phosphat 50.2 2E+02 0.0044 26.3 10.9 16 238-253 103-118 (283)
88 PF02679 ComA: (2R)-phospho-3- 49.9 35 0.00075 31.3 5.2 103 145-252 24-131 (244)
89 TIGR03821 AblA_like_1 lysine-2 49.6 2.4E+02 0.0052 26.9 11.9 80 180-260 161-246 (321)
90 PF02401 LYTB: LytB protein; 49.5 58 0.0012 30.5 6.7 112 191-333 155-274 (281)
91 PF10100 DUF2338: Uncharacteri 49.3 1.3E+02 0.0029 29.7 9.2 129 182-330 160-298 (429)
92 cd04742 NPD_FabD 2-Nitropropan 49.1 94 0.002 30.9 8.4 72 182-255 29-103 (418)
93 COG0282 ackA Acetate kinase [E 48.8 2.1E+02 0.0045 28.1 10.4 122 185-334 164-290 (396)
94 smart00633 Glyco_10 Glycosyl h 48.6 2E+02 0.0043 26.2 10.2 78 177-254 135-225 (254)
95 CHL00076 chlB photochlorophyll 47.8 3.1E+02 0.0067 28.0 12.3 68 190-258 163-249 (513)
96 TIGR03586 PseI pseudaminic aci 47.8 2.6E+02 0.0057 26.8 12.2 139 70-230 74-226 (327)
97 PRK13210 putative L-xylulose 5 47.1 2.2E+02 0.0047 26.0 10.4 13 151-163 24-36 (284)
98 PF04748 Polysacc_deac_2: Dive 47.1 1.6E+02 0.0034 26.3 9.0 54 69-133 70-128 (213)
99 COG1149 MinD superfamily P-loo 46.4 56 0.0012 30.4 6.0 94 151-259 155-251 (284)
100 cd07943 DRE_TIM_HOA 4-hydroxy- 46.1 2.4E+02 0.0052 25.8 17.9 166 70-259 19-199 (263)
101 PRK09485 mmuM homocysteine met 45.7 2.7E+02 0.0057 26.3 13.2 172 72-253 45-246 (304)
102 TIGR03822 AblA_like_2 lysine-2 45.5 2.8E+02 0.006 26.4 12.5 82 178-260 153-240 (321)
103 cd00408 DHDPS-like Dihydrodipi 45.5 2.4E+02 0.0052 25.9 10.4 112 137-255 13-131 (281)
104 PRK13352 thiamine biosynthesis 45.4 3.2E+02 0.0069 27.1 13.7 151 71-261 75-233 (431)
105 PRK05692 hydroxymethylglutaryl 45.4 1.7E+02 0.0037 27.4 9.3 102 140-252 24-138 (287)
106 TIGR02534 mucon_cyclo muconate 44.6 1.4E+02 0.003 28.9 8.9 74 181-259 227-301 (368)
107 cd02070 corrinoid_protein_B12- 43.8 2.2E+02 0.0048 24.9 10.2 150 71-248 9-162 (201)
108 PRK08123 histidinol-phosphatas 43.2 2.7E+02 0.0058 25.6 13.1 72 179-251 153-246 (270)
109 PRK03620 5-dehydro-4-deoxygluc 43.1 2.9E+02 0.0062 26.0 11.3 110 137-254 23-139 (303)
110 COG3653 N-acyl-D-aspartate/D-g 42.3 3.7E+02 0.008 27.0 16.6 223 74-335 183-434 (579)
111 COG2200 Rtn c-di-GMP phosphodi 42.1 2.5E+02 0.0054 25.6 9.8 133 106-253 69-212 (256)
112 PF07287 DUF1446: Protein of u 41.9 1.4E+02 0.003 29.1 8.3 16 238-253 62-77 (362)
113 COG2949 SanA Uncharacterized m 41.9 1E+02 0.0023 27.5 6.6 99 142-255 76-181 (235)
114 PRK09613 thiH thiamine biosynt 41.8 2.1E+02 0.0045 29.0 9.8 105 139-252 115-237 (469)
115 COG4130 Predicted sugar epimer 41.7 1.4E+02 0.0031 26.8 7.5 77 211-302 56-136 (272)
116 PRK14461 ribosomal RNA large s 41.6 3.2E+02 0.007 26.7 10.7 142 107-260 185-354 (371)
117 cd01974 Nitrogenase_MoFe_beta 41.2 3.3E+02 0.0072 27.1 11.2 118 92-220 63-190 (435)
118 PLN02363 phosphoribosylanthran 41.0 98 0.0021 28.5 6.8 83 129-228 48-131 (256)
119 PF01261 AP_endonuc_2: Xylose 40.8 1.4E+02 0.003 25.5 7.6 87 204-303 27-127 (213)
120 PF13378 MR_MLE_C: Enolase C-t 40.8 52 0.0011 25.6 4.4 54 200-259 4-57 (111)
121 COG0008 GlnS Glutamyl- and glu 40.6 1.2E+02 0.0026 30.7 7.9 70 140-220 56-126 (472)
122 PRK00208 thiG thiazole synthas 40.3 3E+02 0.0065 25.3 14.3 106 139-253 73-181 (250)
123 PRK00507 deoxyribose-phosphate 40.2 1.8E+02 0.0038 26.2 8.2 75 70-157 133-207 (221)
124 cd07937 DRE_TIM_PC_TC_5S Pyruv 39.6 3.1E+02 0.0068 25.4 20.8 175 70-259 18-206 (275)
125 COG1038 PycA Pyruvate carboxyl 39.5 2.4E+02 0.0053 30.5 9.9 148 73-260 17-171 (1149)
126 TIGR02313 HpaI-NOT-DapA 2,4-di 39.5 2.6E+02 0.0057 26.1 9.7 111 137-254 16-134 (294)
127 cd00952 CHBPH_aldolase Trans-o 39.1 2.8E+02 0.006 26.2 9.8 108 138-254 25-142 (309)
128 cd02930 DCR_FMN 2,4-dienoyl-Co 39.1 3.3E+02 0.0072 26.2 10.6 24 69-92 126-156 (353)
129 cd00423 Pterin_binding Pterin 39.0 3.1E+02 0.0067 25.1 14.6 106 140-257 22-130 (258)
130 TIGR02668 moaA_archaeal probab 38.6 3.3E+02 0.0071 25.3 16.7 132 68-219 38-179 (302)
131 cd00950 DHDPS Dihydrodipicolin 38.5 2.5E+02 0.0054 25.9 9.3 112 137-255 16-134 (284)
132 PRK05283 deoxyribose-phosphate 38.3 2.6E+02 0.0057 25.8 9.1 83 71-161 144-227 (257)
133 PF01964 ThiC: ThiC family; I 38.1 2.1E+02 0.0046 28.2 8.7 149 71-263 74-231 (420)
134 PF00701 DHDPS: Dihydrodipicol 37.7 2.8E+02 0.006 25.7 9.6 111 137-254 17-134 (289)
135 COG4408 Uncharacterized protei 36.8 2.7E+02 0.0058 26.9 8.9 117 180-316 160-286 (431)
136 TIGR00683 nanA N-acetylneurami 36.7 3.2E+02 0.0069 25.5 9.8 109 145-253 20-134 (290)
137 TIGR01862 N2-ase-Ialpha nitrog 36.6 3E+02 0.0066 27.5 10.1 114 93-221 96-221 (443)
138 PF13344 Hydrolase_6: Haloacid 36.4 51 0.0011 25.5 3.7 47 178-225 17-63 (101)
139 TIGR00538 hemN oxygen-independ 36.1 2.8E+02 0.006 27.8 9.8 64 140-205 216-292 (455)
140 cd03318 MLE Muconate Lactonizi 35.9 1.9E+02 0.0042 27.8 8.5 73 181-258 228-301 (365)
141 TIGR00238 KamA family protein. 35.7 4E+02 0.0087 25.5 11.3 80 180-260 178-263 (331)
142 TIGR01378 thi_PPkinase thiamin 35.3 3.1E+02 0.0067 24.1 9.0 73 216-336 34-110 (203)
143 PRK09058 coproporphyrinogen II 35.3 4.7E+02 0.01 26.1 12.7 108 140-263 228-335 (449)
144 COG0761 lytB 4-Hydroxy-3-methy 35.3 2.9E+02 0.0063 26.0 8.8 67 237-333 204-277 (294)
145 PRK00087 4-hydroxy-3-methylbut 35.1 1.8E+02 0.0039 30.7 8.6 110 190-332 153-270 (647)
146 COG2089 SpsE Sialic acid synth 34.9 3.5E+02 0.0075 26.0 9.3 29 308-336 139-169 (347)
147 COG1082 IolE Sugar phosphate i 34.8 2.6E+02 0.0057 25.2 8.8 109 182-303 19-141 (274)
148 TIGR03822 AblA_like_2 lysine-2 34.8 4.1E+02 0.0088 25.2 15.4 135 70-219 119-260 (321)
149 COG1122 CbiO ABC-type cobalt t 34.2 1.7E+02 0.0038 26.5 7.2 69 138-207 109-203 (235)
150 COG0422 ThiC Thiamine biosynth 34.1 4.6E+02 0.01 25.7 11.4 146 71-260 76-230 (432)
151 TIGR00674 dapA dihydrodipicoli 33.9 3.2E+02 0.007 25.3 9.3 111 137-254 14-131 (285)
152 cd00951 KDGDH 5-dehydro-4-deox 33.9 3.9E+02 0.0085 24.8 10.9 110 137-254 16-132 (289)
153 PRK00912 ribonuclease P protei 33.9 3.5E+02 0.0076 24.2 14.6 146 72-252 15-172 (237)
154 COG0135 TrpF Phosphoribosylant 33.8 2.7E+02 0.0059 24.8 8.2 89 140-251 11-102 (208)
155 cd04728 ThiG Thiazole synthase 33.7 3.8E+02 0.0082 24.6 14.5 106 139-253 73-181 (248)
156 TIGR01928 menC_lowGC/arch o-su 33.7 4.2E+02 0.0091 25.1 15.4 154 71-259 132-286 (324)
157 PRK12581 oxaloacetate decarbox 33.7 5.2E+02 0.011 26.2 17.6 236 70-360 32-287 (468)
158 COG1104 NifS Cysteine sulfinat 33.5 1.1E+02 0.0024 30.0 6.1 82 177-260 101-184 (386)
159 PRK06294 coproporphyrinogen II 33.2 4.6E+02 0.0099 25.4 10.6 26 140-166 168-193 (370)
160 cd06543 GH18_PF-ChiA-like PF-C 33.2 4.2E+02 0.009 24.9 12.8 188 52-259 72-265 (294)
161 PF01619 Pro_dh: Proline dehyd 33.2 2.5E+02 0.0054 26.5 8.5 165 73-258 92-284 (313)
162 cd03322 rpsA The starvation se 33.0 1.8E+02 0.004 28.0 7.7 71 181-256 203-274 (361)
163 PLN02489 homocysteine S-methyl 33.0 4.5E+02 0.0097 25.2 17.9 172 72-253 54-273 (335)
164 PLN00191 enolase 32.8 5.3E+02 0.011 26.0 15.5 97 140-253 296-394 (457)
165 PF11242 DUF2774: Protein of u 32.7 60 0.0013 22.8 3.0 22 292-313 15-36 (63)
166 KOG0173 20S proteasome, regula 32.6 37 0.00081 30.9 2.5 48 32-87 152-200 (271)
167 cd06300 PBP1_ABC_sugar_binding 32.4 3.6E+02 0.0078 24.0 9.4 74 141-222 14-90 (272)
168 PRK13478 phosphonoacetaldehyde 32.3 2.2E+02 0.0048 25.9 7.9 69 179-248 105-173 (267)
169 TIGR01422 phosphonatase phosph 32.3 2.2E+02 0.0047 25.6 7.7 69 179-248 103-171 (253)
170 PF13167 GTP-bdg_N: GTP-bindin 32.2 40 0.00087 26.0 2.4 67 286-353 6-80 (95)
171 PRK07534 methionine synthase I 32.0 4.7E+02 0.01 25.1 21.8 152 72-229 44-214 (336)
172 TIGR01917 gly_red_sel_B glycin 32.0 1.9E+02 0.0042 28.7 7.5 75 181-257 289-374 (431)
173 cd01320 ADA Adenosine deaminas 31.9 4.3E+02 0.0094 24.7 15.4 203 72-348 72-303 (325)
174 COG1131 CcmA ABC-type multidru 31.9 1.2E+02 0.0025 28.5 6.0 64 143-209 140-203 (293)
175 PRK09427 bifunctional indole-3 31.8 1.3E+02 0.0029 30.2 6.6 66 152-229 273-339 (454)
176 PRK00730 rnpA ribonuclease P; 31.7 2.1E+02 0.0045 23.8 6.6 62 122-189 46-109 (138)
177 COG4130 Predicted sugar epimer 31.5 2.2E+02 0.0048 25.7 7.0 51 206-258 19-73 (272)
178 COG1751 Uncharacterized conser 31.3 1.5E+02 0.0033 25.1 5.7 73 72-158 13-85 (186)
179 PF11020 DUF2610: Domain of un 31.1 1.3E+02 0.0029 22.3 4.7 29 283-311 47-75 (82)
180 PRK08195 4-hyroxy-2-oxovalerat 31.1 4.8E+02 0.01 25.0 19.1 122 70-215 22-155 (337)
181 cd07940 DRE_TIM_IPMS 2-isoprop 31.0 4.2E+02 0.0091 24.3 16.4 28 69-96 16-43 (268)
182 PRK14459 ribosomal RNA large s 30.7 5.2E+02 0.011 25.3 12.4 99 161-259 240-360 (373)
183 TIGR00126 deoC deoxyribose-pho 30.7 3.9E+02 0.0085 23.8 9.3 74 70-159 129-205 (211)
184 cd01948 EAL EAL domain. This d 30.5 3.7E+02 0.0079 23.4 9.9 117 124-254 82-209 (240)
185 cd00466 DHQase_II Dehydroquina 30.4 2.4E+02 0.0053 23.4 6.8 78 139-231 24-103 (140)
186 PRK15072 bifunctional D-altron 30.2 2.4E+02 0.0051 27.8 8.1 71 181-256 246-317 (404)
187 cd07948 DRE_TIM_HCS Saccharomy 30.1 4.4E+02 0.0095 24.2 17.4 126 70-217 19-154 (262)
188 PRK09061 D-glutamate deacylase 30.1 4.4E+02 0.0096 26.8 10.2 117 74-202 170-286 (509)
189 PRK14456 ribosomal RNA large s 29.9 4.7E+02 0.01 25.5 9.9 95 163-259 238-354 (368)
190 TIGR00542 hxl6Piso_put hexulos 29.9 4.3E+02 0.0094 24.1 10.4 14 150-163 23-36 (279)
191 PF00148 Oxidored_nitro: Nitro 29.7 2.5E+02 0.0054 27.3 8.2 145 106-257 59-227 (398)
192 PRK03170 dihydrodipicolinate s 29.7 4.6E+02 0.0099 24.3 10.8 111 137-254 17-134 (292)
193 PF13407 Peripla_BP_4: Peripla 29.7 3.4E+02 0.0075 23.9 8.6 74 141-223 13-86 (257)
194 PRK06361 hypothetical protein; 29.6 3.8E+02 0.0083 23.4 14.9 187 74-311 11-200 (212)
195 cd07943 DRE_TIM_HOA 4-hydroxy- 29.6 4.4E+02 0.0095 24.1 10.8 105 140-253 20-131 (263)
196 COG2256 MGS1 ATPase related to 29.5 3.5E+02 0.0075 26.9 8.6 107 77-203 37-143 (436)
197 PRK07535 methyltetrahydrofolat 29.4 4.5E+02 0.0099 24.2 14.3 102 140-255 23-124 (261)
198 PRK04147 N-acetylneuraminate l 29.3 4.7E+02 0.01 24.3 10.1 112 137-254 19-137 (293)
199 PRK02910 light-independent pro 29.2 6.3E+02 0.014 25.8 13.7 107 105-221 69-192 (519)
200 PRK07379 coproporphyrinogen II 29.2 4.8E+02 0.01 25.6 10.0 26 140-166 180-205 (400)
201 PLN02681 proline dehydrogenase 29.2 6.1E+02 0.013 25.6 17.1 174 74-258 221-413 (455)
202 TIGR00190 thiC thiamine biosyn 28.8 5.8E+02 0.013 25.3 19.0 152 71-261 75-230 (423)
203 TIGR01918 various_sel_PB selen 28.5 2.4E+02 0.0051 28.1 7.4 74 181-256 289-373 (431)
204 PLN02428 lipoic acid synthase 28.5 5.5E+02 0.012 24.9 15.1 170 69-258 129-325 (349)
205 COG2069 CdhD CO dehydrogenase/ 28.3 5.1E+02 0.011 24.6 9.1 98 151-258 159-262 (403)
206 PRK13537 nodulation ABC transp 28.2 3.3E+02 0.0072 25.6 8.4 50 159-210 156-205 (306)
207 cd01981 Pchlide_reductase_B Pc 28.1 5.9E+02 0.013 25.1 15.8 32 191-222 163-197 (430)
208 PRK14463 ribosomal RNA large s 27.7 5.7E+02 0.012 24.7 11.9 98 160-259 207-326 (349)
209 PF01118 Semialdhyde_dh: Semia 27.4 91 0.002 24.7 3.8 29 70-98 74-102 (121)
210 PHA02128 hypothetical protein 27.3 1.1E+02 0.0025 24.0 4.1 75 178-253 60-150 (151)
211 COG3693 XynA Beta-1,4-xylanase 27.3 5.7E+02 0.012 24.6 10.2 89 140-231 169-264 (345)
212 smart00052 EAL Putative diguan 27.2 4.2E+02 0.0091 23.0 9.8 100 142-253 99-209 (241)
213 PRK11865 pyruvate ferredoxin o 27.1 5.4E+02 0.012 24.3 9.8 121 75-214 164-289 (299)
214 PLN03228 methylthioalkylmalate 27.1 4.6E+02 0.0099 26.8 9.5 107 139-255 103-230 (503)
215 PRK13505 formate--tetrahydrofo 27.1 1.2E+02 0.0027 31.1 5.4 78 181-259 329-413 (557)
216 PRK06424 transcription factor; 27.0 1.5E+02 0.0034 24.7 5.2 76 238-313 24-109 (144)
217 PF13289 SIR2_2: SIR2-like dom 26.8 3.1E+02 0.0066 21.8 7.1 68 178-251 74-143 (143)
218 cd02968 SCO SCO (an acronym fo 26.7 3.3E+02 0.0071 21.6 7.6 64 179-251 44-110 (142)
219 PF00563 EAL: EAL domain; Int 26.6 1.6E+02 0.0035 25.7 5.8 69 178-254 134-210 (236)
220 TIGR00735 hisF imidazoleglycer 26.6 4.9E+02 0.011 23.6 12.5 93 148-250 160-253 (254)
221 PF07994 NAD_binding_5: Myo-in 26.0 5.6E+02 0.012 24.1 9.5 137 141-317 131-272 (295)
222 PLN02321 2-isopropylmalate syn 25.9 7.4E+02 0.016 26.2 11.0 148 145-336 110-278 (632)
223 PTZ00081 enolase; Provisional 25.9 6.8E+02 0.015 25.1 15.5 98 139-253 281-382 (439)
224 cd03327 MR_like_2 Mandelate ra 25.8 2.8E+02 0.0062 26.5 7.6 69 181-254 211-280 (341)
225 PRK13352 thiamine biosynthesis 25.8 4.3E+02 0.0094 26.2 8.6 122 178-333 121-246 (431)
226 COG0820 Predicted Fe-S-cluster 25.5 3.6E+02 0.0079 26.1 8.0 96 162-260 215-332 (349)
227 PRK09413 IS2 repressor TnpA; R 25.5 84 0.0018 25.2 3.3 42 70-117 13-54 (121)
228 PRK09536 btuD corrinoid ABC tr 25.3 2E+02 0.0044 28.4 6.6 74 180-259 279-352 (402)
229 PF02426 MIase: Muconolactone 25.2 1.3E+02 0.0029 23.0 4.1 51 181-233 28-87 (91)
230 PRK08446 coproporphyrinogen II 25.2 6.1E+02 0.013 24.3 10.1 60 140-203 163-231 (350)
231 PRK12558 glutamyl-tRNA synthet 25.2 6.6E+02 0.014 25.3 10.1 67 140-217 49-115 (445)
232 cd03323 D-glucarate_dehydratas 25.2 2E+02 0.0043 28.3 6.5 71 181-256 250-321 (395)
233 cd07939 DRE_TIM_NifV Streptomy 25.2 5.2E+02 0.011 23.5 16.2 166 70-259 17-196 (259)
234 PRK14477 bifunctional nitrogen 25.0 3.8E+02 0.0083 29.7 9.2 117 93-222 550-676 (917)
235 PRK08776 cystathionine gamma-s 25.0 2.9E+02 0.0063 27.2 7.6 13 305-317 267-279 (405)
236 PRK05718 keto-hydroxyglutarate 24.9 4.7E+02 0.01 23.3 8.3 52 70-132 24-75 (212)
237 PRK01313 rnpA ribonuclease P; 24.8 3.2E+02 0.0069 22.3 6.6 63 122-189 47-113 (129)
238 TIGR02932 vnfK_nitrog V-contai 24.7 7.2E+02 0.016 25.0 13.4 119 92-222 67-197 (457)
239 PRK11858 aksA trans-homoaconit 24.7 6.6E+02 0.014 24.5 14.6 141 145-336 28-183 (378)
240 PRK14455 ribosomal RNA large s 24.6 6.1E+02 0.013 24.5 9.6 95 163-259 223-338 (356)
241 PRK15108 biotin synthase; Prov 24.6 6.3E+02 0.014 24.2 11.4 111 139-259 76-196 (345)
242 cd07939 DRE_TIM_NifV Streptomy 24.5 5.4E+02 0.012 23.4 11.2 96 140-251 18-127 (259)
243 PRK14017 galactonate dehydrata 24.5 4.2E+02 0.0091 25.8 8.6 71 181-256 217-288 (382)
244 TIGR01188 drrA daunorubicin re 24.4 4.3E+02 0.0092 24.6 8.4 50 159-210 142-191 (302)
245 KOG2792 Putative cytochrome C 24.3 2.6E+02 0.0057 25.9 6.4 75 192-301 142-223 (280)
246 PF10566 Glyco_hydro_97: Glyco 24.2 1.8E+02 0.0039 27.1 5.6 55 202-256 30-95 (273)
247 PF01297 TroA: Periplasmic sol 24.1 4.3E+02 0.0093 23.8 8.2 60 193-259 172-234 (256)
248 COG1751 Uncharacterized conser 24.1 4.5E+02 0.0098 22.3 9.3 78 178-258 13-94 (186)
249 PF14871 GHL6: Hypothetical gl 24.0 72 0.0016 26.2 2.7 20 238-257 48-67 (132)
250 PRK05283 deoxyribose-phosphate 23.9 5.8E+02 0.013 23.6 9.0 80 69-164 22-104 (257)
251 cd03320 OSBS o-Succinylbenzoat 23.9 4.8E+02 0.01 23.7 8.5 73 181-259 167-239 (263)
252 PF01890 CbiG_C: Cobalamin syn 23.9 3.2E+02 0.007 21.9 6.4 54 202-256 13-67 (121)
253 TIGR00381 cdhD CO dehydrogenas 23.8 7.1E+02 0.015 24.5 12.3 99 153-261 150-254 (389)
254 PF06415 iPGM_N: BPG-independe 23.8 4.5E+02 0.0098 23.7 7.9 75 178-252 14-99 (223)
255 COG2896 MoaA Molybdenum cofact 23.8 6.5E+02 0.014 24.1 12.5 128 69-219 42-182 (322)
256 PRK09997 hydroxypyruvate isome 23.7 5.4E+02 0.012 23.1 9.3 15 238-252 89-103 (258)
257 TIGR03249 KdgD 5-dehydro-4-deo 23.7 6E+02 0.013 23.6 11.2 110 137-254 21-137 (296)
258 PRK13015 3-dehydroquinate dehy 23.6 4.4E+02 0.0096 22.1 7.7 78 139-231 26-105 (146)
259 PRK14847 hypothetical protein; 23.5 5.9E+02 0.013 24.5 9.0 104 145-257 56-180 (333)
260 PF00697 PRAI: N-(5'phosphorib 23.5 2.6E+02 0.0057 24.3 6.4 67 151-229 14-81 (197)
261 TIGR01861 ANFD nitrogenase iro 23.4 6.6E+02 0.014 25.7 10.0 112 93-221 106-232 (513)
262 KOG2534 DNA polymerase IV (fam 23.4 2.5E+02 0.0053 26.9 6.2 122 159-309 189-320 (353)
263 PRK12268 methionyl-tRNA synthe 23.3 7.9E+02 0.017 25.2 10.8 46 142-193 73-118 (556)
264 COG3623 SgaU Putative L-xylulo 23.3 78 0.0017 28.8 2.8 81 46-134 67-157 (287)
265 TIGR03221 muco_delta muconolac 23.1 1.7E+02 0.0036 22.4 4.2 51 182-234 28-87 (90)
266 cd01967 Nitrogenase_MoFe_alpha 23.1 7E+02 0.015 24.2 11.7 107 106-220 72-189 (406)
267 COG4464 CapC Capsular polysacc 23.1 2.8E+02 0.006 25.1 6.2 32 67-98 14-45 (254)
268 PRK14041 oxaloacetate decarbox 23.0 5.2E+02 0.011 26.2 9.0 102 145-253 27-141 (467)
269 cd03317 NAAAR N-acylamino acid 23.0 3.2E+02 0.007 26.1 7.4 73 181-258 217-290 (354)
270 TIGR01228 hutU urocanate hydra 22.9 8.3E+02 0.018 25.0 10.2 108 103-227 139-258 (545)
271 PRK14466 ribosomal RNA large s 22.7 7E+02 0.015 24.1 11.4 96 162-259 210-326 (345)
272 PF02638 DUF187: Glycosyl hydr 22.7 3.6E+02 0.0079 25.5 7.5 19 238-256 74-92 (311)
273 COG2884 FtsE Predicted ATPase 22.6 5.6E+02 0.012 22.9 7.9 68 139-208 109-202 (223)
274 PRK14462 ribosomal RNA large s 22.5 7.2E+02 0.016 24.1 10.5 95 164-260 225-340 (356)
275 PRK09456 ?-D-glucose-1-phospha 22.3 3.2E+02 0.0069 23.5 6.7 29 178-207 87-115 (199)
276 PRK09358 adenosine deaminase; 22.3 6.7E+02 0.015 23.7 16.6 19 74-92 82-100 (340)
277 TIGR01285 nifN nitrogenase mol 22.2 3.9E+02 0.0084 26.6 8.0 117 94-220 71-197 (432)
278 PRK13210 putative L-xylulose 5 22.0 6E+02 0.013 23.0 10.6 13 238-250 137-149 (284)
279 PF05378 Hydant_A_N: Hydantoin 21.9 1.7E+02 0.0037 25.1 4.8 44 203-247 133-176 (176)
280 COG1168 MalY Bifunctional PLP- 21.9 7.7E+02 0.017 24.2 10.2 49 181-229 147-203 (388)
281 TIGR01549 HAD-SF-IA-v1 haloaci 21.8 3.9E+02 0.0084 21.6 6.9 67 179-249 68-134 (154)
282 COG3845 ABC-type uncharacteriz 21.7 2.8E+02 0.0061 28.1 6.6 52 151-205 151-202 (501)
283 PRK13644 cbiO cobalt transport 21.7 4E+02 0.0088 24.4 7.6 46 159-206 154-199 (274)
284 PF00290 Trp_syntA: Tryptophan 21.7 4.2E+02 0.009 24.5 7.4 94 140-249 22-117 (259)
285 TIGR01502 B_methylAsp_ase meth 21.7 4.7E+02 0.01 25.9 8.3 71 181-256 281-357 (408)
286 PRK10551 phage resistance prot 21.7 5.5E+02 0.012 26.2 9.1 100 142-253 364-473 (518)
287 COG5310 Homospermidine synthas 21.6 6.2E+02 0.014 24.5 8.5 147 77-251 51-210 (481)
288 PF09989 DUF2229: CoA enzyme a 21.6 2.7E+02 0.0059 24.9 6.1 34 219-253 185-218 (221)
289 PRK03031 rnpA ribonuclease P; 21.5 3.9E+02 0.0085 21.3 6.5 65 122-190 47-114 (122)
290 TIGR03217 4OH_2_O_val_ald 4-hy 21.3 7.3E+02 0.016 23.7 18.4 164 70-259 21-202 (333)
291 cd08557 PI-PLCc_bacteria_like 21.3 2E+02 0.0044 26.0 5.4 19 78-96 42-60 (271)
292 cd07945 DRE_TIM_CMS Leptospira 21.3 6.7E+02 0.014 23.3 14.5 29 70-98 16-46 (280)
293 cd00408 DHDPS-like Dihydrodipi 21.2 6.4E+02 0.014 23.0 14.5 30 68-97 13-42 (281)
294 cd02069 methionine_synthase_B1 21.2 5.9E+02 0.013 22.6 8.4 150 70-248 12-168 (213)
295 cd01977 Nitrogenase_VFe_alpha 21.2 7.9E+02 0.017 24.1 10.5 116 91-220 64-191 (415)
296 PRK03459 rnpA ribonuclease P; 21.2 4.2E+02 0.0092 21.3 6.6 64 122-190 48-114 (122)
297 PRK12581 oxaloacetate decarbox 21.0 8.8E+02 0.019 24.6 15.9 162 65-248 97-263 (468)
298 PRK00499 rnpA ribonuclease P; 20.9 4.2E+02 0.009 20.9 6.5 64 122-190 38-104 (114)
299 PLN02289 ribulose-bisphosphate 20.8 2.6E+02 0.0056 24.1 5.3 22 67-88 73-94 (176)
300 COG1809 (2R)-phospho-3-sulfola 20.8 6.4E+02 0.014 22.9 8.5 101 148-252 33-137 (258)
301 PF00356 LacI: Bacterial regul 20.7 99 0.0021 20.3 2.3 41 293-337 2-42 (46)
302 TIGR03471 HpnJ hopanoid biosyn 20.6 8.6E+02 0.019 24.3 11.8 73 177-256 229-306 (472)
303 PRK12410 glutamylglutaminyl-tR 20.5 4.2E+02 0.0091 26.5 7.7 67 140-217 46-112 (433)
304 TIGR00618 sbcc exonuclease Sbc 20.5 1.7E+02 0.0037 32.8 5.5 48 159-208 978-1025(1042)
305 TIGR01060 eno phosphopyruvate 20.5 8.4E+02 0.018 24.2 11.4 96 140-252 263-362 (425)
306 PRK07114 keto-hydroxyglutarate 20.4 5.8E+02 0.013 23.0 7.9 40 70-115 24-63 (222)
307 COG0419 SbcC ATPase involved i 20.3 1.7E+02 0.0038 32.2 5.5 56 147-204 827-884 (908)
308 COG0626 MetC Cystathionine bet 20.2 5.5E+02 0.012 25.3 8.3 44 219-262 151-194 (396)
309 TIGR00126 deoC deoxyribose-pho 20.2 6.2E+02 0.013 22.5 16.7 161 69-252 14-180 (211)
310 PRK01492 rnpA ribonuclease P; 20.2 4.6E+02 0.0099 20.9 6.7 61 123-187 47-113 (118)
No 1
>COG0667 Tas Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) [Energy production and conversion]
Probab=100.00 E-value=9.9e-63 Score=466.27 Aligned_cols=296 Identities=36% Similarity=0.596 Sum_probs=259.7
Q ss_pred cceeecC--CcccCcceecccccCCCCcCCCCCCCHHHHHHHHHHHHHCCCCEEeCCCCcCCCCCCChHHHHHHHHHhhC
Q 017700 39 WEKVKMG--PLSASPMGFGTWAWGNQFLWGYQESMDSQLQQTFNLAVENGINLFDTADSYGTGRLNGKSEKLLGKFISEI 116 (367)
Q Consensus 39 m~~~~lg--g~~vs~lglGt~~~g~~~~~g~~~~~~~~a~~~l~~A~~~Gi~~~DTA~~Yg~~~~~g~sE~~lG~al~~~ 116 (367)
|+||+|| |++||+||||||.+|+. ....+++++.++|+.|+++|||+||||+.||. |.||++||+||+.+
T Consensus 1 m~~r~lG~~gl~vs~lglG~~~~g~~----~~~~~~~~a~~il~~A~d~Gin~~DTA~~Yg~----g~sE~ilG~~l~~~ 72 (316)
T COG0667 1 MKYRRLGRSGLKVSPLGLGTMTLGGD----TDDEEEAEAIEILDAALDAGINFFDTADVYGD----GRSEEILGEALKER 72 (316)
T ss_pred CCceecCCCCceecceeeeccccCCC----CCchhhhHHHHHHHHHHHcCCCEEECccccCC----CchHHHHHHHHhcc
Confidence 7899999 99999999999999864 23344558888999999999999999999998 89999999999995
Q ss_pred CCCCCCCCcEEEEeeccCCC--------CCCChHHHHHHHHHHHhhhCCCcEEEEEeccCCCCCCChhHHHHHHHHHHHH
Q 017700 117 PGQKQVQNNIVIATKFAAYP--------WRLTPGQFVNACRASLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMY 188 (367)
Q Consensus 117 ~~~~~~R~~v~i~tK~~~~~--------~~~~~~~i~~~l~~sL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~~~~L~~l~ 188 (367)
+ .|++|+|+||++... .++++++|+++++.||+|||||||||||+||++.. .+ ..+++.+|.+|+
T Consensus 73 ~----~Rd~vvIaTK~g~~~~~~~~~~~~~~s~~~i~~~v~~SL~RLgtd~IDl~~iH~~d~~-~p--~~e~~~aL~~l~ 145 (316)
T COG0667 73 G----RRDKVVIATKVGYRPGDPGPNGVFGLSRDHIRRAVEASLKRLGTDYIDLYQLHRPDPE-TP--IEETLEALDELV 145 (316)
T ss_pred C----CCCeEEEEEeeccCCCCCCCCccCCCCHHHHHHHHHHHHHHhCCCceeEEEeCCCCCC-CC--HHHHHHHHHHHH
Confidence 3 399999999998653 34689999999999999999999999999999752 44 345799999999
Q ss_pred HcCcEeEEeecCCChHHHHHHHHHHHhcCCCceeEEeeecccccccchhhHHHHHHHcCCeEEEecCCCCccccCCCCCC
Q 017700 189 EKGLVRAVGVSNYGPNQLVKIHDYLTARGVPLCSAQVQFSLLSMGENQLEIKNICDSLGIRLISYSPLGLGMLTGKYTPS 268 (367)
Q Consensus 189 ~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~v~a~~pl~~G~L~~~~~~~ 268 (367)
++||||+||+||++.+++.++++.+ .+++++|.+||+++|..+. +++++|+++||++++|+||++|+|++++..+
T Consensus 146 ~~G~ir~iG~S~~~~~~i~~a~~~~----~~~~~~Q~~ynl~~R~~e~-~l~~~~~~~gi~~~~~spla~G~Ltgk~~~~ 220 (316)
T COG0667 146 REGKIRYIGVSNYSAEQIAEALAVA----APIDSLQPEYNLLERDAEK-ELLPLCREEGIGLLAYSPLASGLLTGKYLPG 220 (316)
T ss_pred HcCCeeEEEecCCCHHHHHHHHHhc----CCceeecccCccccccchh-HHHHHHHHcCCeEEEecCccccccCCCcCCC
Confidence 9999999999999999999998873 4799999999999987766 6999999999999999999999999998775
Q ss_pred CCCCChhh----hhhhhhccChHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCC--eeecCCCCHHHHHHHHhccCCCCCH
Q 017700 269 KLPRGPRA----LLFRQILPGLKPLLRSLKEIAERRGKTIPQVAINWCICKGT--IPIPGVKSVKQVEENLGALGWRLSS 342 (367)
Q Consensus 269 ~~~~~~~~----~~~~~~~~~~~~~~~~l~~la~~~g~t~~qlal~~~l~~~~--~vi~g~~~~e~l~enl~a~~~~L~~ 342 (367)
+.+.+. .......+....+++.++++|+++|+|++|+||+|+++++. ++|+|+++++||++|+++++..|++
T Consensus 221 --~~~~r~~~~~~~~~~~~~~~~~~~~~l~~~a~~~g~t~aq~ALawvl~~~~v~~~I~Ga~~~~qL~en~~A~~~~L~~ 298 (316)
T COG0667 221 --PEGSRASELPRFQRELTERGLAILRALEELAKELGATPAQVALAWVLAQPGVTSPIVGASKAEQLEENLAALDIKLSE 298 (316)
T ss_pred --cchhhccccccchhhhhHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCceEeecCCCHHHHHHHHHHhcCCCCH
Confidence 333322 11223567778888999999999999999999999999986 8999999999999999999999999
Q ss_pred HHHHHHHHHHhhCC
Q 017700 343 DELLELEYAALESP 356 (367)
Q Consensus 343 e~~~~l~~~~~~~~ 356 (367)
++++.|++.....+
T Consensus 299 ~~~~~l~~~~~~~~ 312 (316)
T COG0667 299 EELAALDEISAEEP 312 (316)
T ss_pred HHHHHHHHHhhhcc
Confidence 99999998877543
No 2
>KOG1575 consensus Voltage-gated shaker-like K+ channel, subunit beta/KCNAB [Energy production and conversion]
Probab=100.00 E-value=2e-62 Score=455.71 Aligned_cols=309 Identities=35% Similarity=0.571 Sum_probs=270.7
Q ss_pred CCCCCCCcceeecC--CcccCcceecccccCCCCcCCCCCCCHHHHHHHHHHHHHCCCCEEeCCCCcCCCCCCChHHHHH
Q 017700 32 KLPLFWPWEKVKMG--PLSASPMGFGTWAWGNQFLWGYQESMDSQLQQTFNLAVENGINLFDTADSYGTGRLNGKSEKLL 109 (367)
Q Consensus 32 ~~~~~~~m~~~~lg--g~~vs~lglGt~~~g~~~~~g~~~~~~~~a~~~l~~A~~~Gi~~~DTA~~Yg~~~~~g~sE~~l 109 (367)
.++....|+|++|| |++||+||||||.+. .|+.+ .++++|++++++|+++|+|+||||++||+ |.+|.++
T Consensus 5 ~~~~~~~~~~~~lg~~gl~Vs~lglG~m~~~---~~~~~-~~~e~a~~~m~~a~e~Gin~fDtAe~Yg~----~~~E~ll 76 (336)
T KOG1575|consen 5 EPSTELGMLRRKLGNSGLKVSPLGLGCMGWT---TFGGQ-IDKEEAFELLDHAYEAGINFFDTAEVYGN----GQSEELL 76 (336)
T ss_pred cccchhcceeeeccCCCceecceeecceeee---ccccC-CCHHHHHHHHHHHHHcCCCEEehhhhcCC----cccHHHH
Confidence 34444558999999 899999999998542 35555 78999999999999999999999999999 9999999
Q ss_pred HHHHhhCCCCCCCCCcEEEEeeccCCC-----CCCChHHHHHHHHHHHhhhCCCcEEEEEeccCCCCCCChhHHHHHHHH
Q 017700 110 GKFISEIPGQKQVQNNIVIATKFAAYP-----WRLTPGQFVNACRASLARLQIEQIGIGQLHWSTANYAPPQELALWNGL 184 (367)
Q Consensus 110 G~al~~~~~~~~~R~~v~i~tK~~~~~-----~~~~~~~i~~~l~~sL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~~~~L 184 (367)
|++|++++ .+|++|+|+||++... .+.+...+...++.|+++|+++||||||+||+|.. .|. ++++++|
T Consensus 77 g~~i~~~~---~~R~~vviaTK~~~~~~~~~~~G~~~~~i~~~~~~s~~rl~~~~IDl~q~Hr~D~~-~pi--ee~m~aL 150 (336)
T KOG1575|consen 77 GEFIKSRG---WRRDKVVIATKFGFDYGGETPRGLSRKHIIEGVRDSLRRLQTDYIDLLQVHRWDPM-VPI--EETMRAL 150 (336)
T ss_pred HHHHHhcC---CcCCcEEEEEEEeccCCCcCCCCCcHHHHHHHHHHHHHhcCCCeeEEEEEcccCCC-CCH--HHHHHHH
Confidence 99999986 4899999999998654 45678889999999999999999999999998643 565 4699999
Q ss_pred HHHHHcCcEeEEeecCCChHHHHHHHHHHHhcCCCceeEEeeecccccccchhhHHHHHHHcCCeEEEecCCCCccccCC
Q 017700 185 VAMYEKGLVRAVGVSNYGPNQLVKIHDYLTARGVPLCSAQVQFSLLSMGENQLEIKNICDSLGIRLISYSPLGLGMLTGK 264 (367)
Q Consensus 185 ~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~v~a~~pl~~G~L~~~ 264 (367)
.+++++|||+|||+|+++++++.+++..+. +++.++|++||++.|+.++.++++.|++.||++++|+||++|+|+++
T Consensus 151 ~~lve~Gki~yiGlSe~sa~~I~~a~~~~~---~p~~s~Q~eysl~~Rd~ee~~i~~~c~~~Gi~li~ysPL~~G~Ltgk 227 (336)
T KOG1575|consen 151 TDLVEQGKIRYWGLSEWSAEEIREAHAVAP---IPIVAVQVEYSLLSRDKEERGIIPLCRELGIGLIAWSPLGRGLLTGK 227 (336)
T ss_pred HHHHhcCceEEEEeccCCHHHHHHHHHhcC---CCceEeeeechhhhcchhhhhHHHHHHHcCcceEEecccccceeccC
Confidence 999999999999999999999999999844 56999999999999998886899999999999999999999999999
Q ss_pred CCCC-CCCCChhhhhhhh---hc---cChHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCC--eeecCCCCHHHHHHHHhc
Q 017700 265 YTPS-KLPRGPRALLFRQ---IL---PGLKPLLRSLKEIAERRGKTIPQVAINWCICKGT--IPIPGVKSVKQVEENLGA 335 (367)
Q Consensus 265 ~~~~-~~~~~~~~~~~~~---~~---~~~~~~~~~l~~la~~~g~t~~qlal~~~l~~~~--~vi~g~~~~e~l~enl~a 335 (367)
+... +.+.+..+..+.. .. ..++.+++++.++|+++|+|++|+||+|+++++. ++|+|+++.+||+||++|
T Consensus 228 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iA~k~g~T~~qlALawv~~~~~v~~pIpG~s~ve~l~eni~A 307 (336)
T KOG1575|consen 228 YKLGEDSRNGDKRFQFLGLSPQTEEGDKQKPILEALSKIAEKHGCTVPQLALAWVLSNGKVSSPIPGASKIEQLKENIGA 307 (336)
T ss_pred cccccccccccccccccccccccchhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhCCCEEecCCCCcHHHHHHHHhh
Confidence 8653 4454444332222 22 4477889999999999999999999999999997 899999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHhhCCh
Q 017700 336 LGWRLSSDELLELEYAALESPQ 357 (367)
Q Consensus 336 ~~~~L~~e~~~~l~~~~~~~~~ 357 (367)
+...|+++++.+|+++.+....
T Consensus 308 l~~~Lt~e~~~~l~~~~~~~~~ 329 (336)
T KOG1575|consen 308 LSVKLTPEEIKELEEIIDKILG 329 (336)
T ss_pred hhccCCHHHHHHHHHhhccccC
Confidence 9999999999999999987643
No 3
>COG0656 ARA1 Aldo/keto reductases, related to diketogulonate reductase [General function prediction only]
Probab=100.00 E-value=2.2e-60 Score=434.46 Aligned_cols=263 Identities=30% Similarity=0.486 Sum_probs=235.8
Q ss_pred cceeecC-CcccCcceecccccCCCCcCCCCCCCHHHHHHHHHHHHHCCCCEEeCCCCcCCCCCCChHHHHHHHHHhhCC
Q 017700 39 WEKVKMG-PLSASPMGFGTWAWGNQFLWGYQESMDSQLQQTFNLAVENGINLFDTADSYGTGRLNGKSEKLLGKFISEIP 117 (367)
Q Consensus 39 m~~~~lg-g~~vs~lglGt~~~g~~~~~g~~~~~~~~a~~~l~~A~~~Gi~~~DTA~~Yg~~~~~g~sE~~lG~al~~~~ 117 (367)
+.+.+|+ |.+||.||||||++++. +.+.+.+..|++.|+|+||||..||+ |+.+|++++.
T Consensus 3 ~~~~~l~~g~~iP~iGlGt~~~~~~----------~~~~~av~~Al~~Gyr~IDTA~~Ygn-------E~~VG~aI~~-- 63 (280)
T COG0656 3 KTKVTLNNGVEIPAIGLGTWQIGDD----------EWAVRAVRAALELGYRLIDTAEIYGN-------EEEVGEAIKE-- 63 (280)
T ss_pred CceeecCCCCcccCcceEeeecCCc----------hhHHHHHHHHHHhCcceEecHhHhcC-------HHHHHHHHHh--
Confidence 4578888 89999999999998743 34899999999999999999999998 9999999999
Q ss_pred CCCCCCCcEEEEeeccCCCCCCChHHHHHHHHHHHhhhCCCcEEEEEeccCCCCCCChhHHHHHHHHHHHHHcCcEeEEe
Q 017700 118 GQKQVQNNIVIATKFAAYPWRLTPGQFVNACRASLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKGLVRAVG 197 (367)
Q Consensus 118 ~~~~~R~~v~i~tK~~~~~~~~~~~~i~~~l~~sL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iG 197 (367)
+++.|+++||+||+.+... +++.+.+++++||++||+||+|||+||||... ......++|++|++++++|+||+||
T Consensus 64 -s~v~ReelFittKvw~~~~--~~~~~~~a~e~Sl~rLg~dyvDLyLiHwP~~~-~~~~~~etw~alE~l~~~G~ir~IG 139 (280)
T COG0656 64 -SGVPREELFITTKVWPSDL--GYDETLKALEASLKRLGLDYVDLYLIHWPVPN-KYVVIEETWKALEELVDEGLIRAIG 139 (280)
T ss_pred -cCCCHHHeEEEeecCCccC--CcchHHHHHHHHHHHhCCCceeEEEECCCCCc-cCccHHHHHHHHHHHHhcCCccEEE
Confidence 4579999999999987533 78999999999999999999999999999543 1111457999999999999999999
Q ss_pred ecCCChHHHHHHHHHHHhcCCCceeEEeeecccccccchhhHHHHHHHcCCeEEEecCCCCcc-ccCCCCCCCCCCChhh
Q 017700 198 VSNYGPNQLVKIHDYLTARGVPLCSAQVQFSLLSMGENQLEIKNICDSLGIRLISYSPLGLGM-LTGKYTPSKLPRGPRA 276 (367)
Q Consensus 198 vS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~v~a~~pl~~G~-L~~~~~~~~~~~~~~~ 276 (367)
||||+.++++++++. .++.|++||++|||+.+.. +++++|+++||.+++|+||+.|. |...
T Consensus 140 VSNF~~~~L~~l~~~---~~~~p~~NQIe~hp~~~q~---el~~~~~~~gI~v~AysPL~~g~~l~~~------------ 201 (280)
T COG0656 140 VSNFGVEHLEELLSL---AKVKPAVNQIEYHPYLRQP---ELLPFCQRHGIAVEAYSPLAKGGKLLDN------------ 201 (280)
T ss_pred eeCCCHHHHHHHHHh---cCCCCceEEEEeccCCCcH---HHHHHHHHcCCEEEEECCcccccccccC------------
Confidence 999999999999987 3378999999999998765 59999999999999999999653 3321
Q ss_pred hhhhhhccChHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCCeeecCCCCHHHHHHHHhccCCCCCHHHHHHHHHHHhhCC
Q 017700 277 LLFRQILPGLKPLLRSLKEIAERRGKTIPQVAINWCICKGTIPIPGVKSVKQVEENLGALGWRLSSDELLELEYAALESP 356 (367)
Q Consensus 277 ~~~~~~~~~~~~~~~~l~~la~~~g~t~~qlal~~~l~~~~~vi~g~~~~e~l~enl~a~~~~L~~e~~~~l~~~~~~~~ 356 (367)
+.+.+||++||.|++|++|+|+++++.++||.+++++|++||++++++.||+|||+.|+++.....
T Consensus 202 --------------~~l~~Ia~k~g~t~AQv~L~W~i~~gv~~Ipks~~~~ri~eN~~~~~f~Ls~ed~~~i~~l~~~~~ 267 (280)
T COG0656 202 --------------PVLAEIAKKYGKTPAQVALRWHIQRGVIVIPKSTTPERIRENLAAFDFELSEEDMAAIDALDRGYG 267 (280)
T ss_pred --------------hHHHHHHHHhCCCHHHHHHHHHHhCCcEEecCCCCHHHHHHHHhhhcCCCCHHHHHHHHhhccccC
Confidence 799999999999999999999999999999999999999999999999999999999999998763
No 4
>PRK10625 tas putative aldo-keto reductase; Provisional
Probab=100.00 E-value=2.4e-58 Score=444.02 Aligned_cols=305 Identities=25% Similarity=0.386 Sum_probs=254.3
Q ss_pred cceeecC--CcccCcceecccccCCCCcCCCCCCCHHHHHHHHHHHHHCCCCEEeCCCCcCCCC---CCChHHHHHHHHH
Q 017700 39 WEKVKMG--PLSASPMGFGTWAWGNQFLWGYQESMDSQLQQTFNLAVENGINLFDTADSYGTGR---LNGKSEKLLGKFI 113 (367)
Q Consensus 39 m~~~~lg--g~~vs~lglGt~~~g~~~~~g~~~~~~~~a~~~l~~A~~~Gi~~~DTA~~Yg~~~---~~g~sE~~lG~al 113 (367)
|+||+|| |+.||+||||||++|+. .+++++.++|+.|+++|||+||||+.||.+. ..|.||+.+|++|
T Consensus 1 m~~r~lg~t~~~vs~iglGt~~~g~~-------~~~~~a~~~l~~al~~Gi~~~DTA~~Yg~~~~~~~~g~sE~~iG~aL 73 (346)
T PRK10625 1 MQYHRIPHSSLEVSTLGLGTMTFGEQ-------NSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPETQGLTETYIGNWL 73 (346)
T ss_pred CCceecCCCCCccccEeEeccccCCC-------CCHHHHHHHHHHHHHcCCCEEECccccCCCcCCCCCCchHHHHHHHH
Confidence 7899999 99999999999998742 4578999999999999999999999998311 1278999999999
Q ss_pred hhCCCCCCCCCcEEEEeeccCCC----------CCCChHHHHHHHHHHHhhhCCCcEEEEEeccCCCCCC----------
Q 017700 114 SEIPGQKQVQNNIVIATKFAAYP----------WRLTPGQFVNACRASLARLQIEQIGIGQLHWSTANYA---------- 173 (367)
Q Consensus 114 ~~~~~~~~~R~~v~i~tK~~~~~----------~~~~~~~i~~~l~~sL~~Lg~d~iDl~~lH~~~~~~~---------- 173 (367)
+.. ..|++++|+||++... ..++++.+++++++||++||+||||||+||||+....
T Consensus 74 ~~~----~~R~~v~i~TK~~~~~~~~~~~~~~~~~~s~~~i~~~~e~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~~~ 149 (346)
T PRK10625 74 AKR----GSREKLIIASKVSGPSRNNDKGIRPNQALDRKNIREALHDSLKRLQTDYLDLYQVHWPQRPTNCFGKLGYSWT 149 (346)
T ss_pred hhc----CCcceEEEEcccccCCcCCCCCcCCCCCCCHHHHHHHHHHHHHHhCCCeEeEEEeeccCcccccccccccccc
Confidence 863 2599999999985311 1357899999999999999999999999999853100
Q ss_pred ----ChhHHHHHHHHHHHHHcCcEeEEeecCCChHHHHHHHHHHHhcCC-CceeEEeeecccccccchhhHHHHHHHcCC
Q 017700 174 ----PPQELALWNGLVAMYEKGLVRAVGVSNYGPNQLVKIHDYLTARGV-PLCSAQVQFSLLSMGENQLEIKNICDSLGI 248 (367)
Q Consensus 174 ----~~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~-~~~~~q~~~n~~~~~~~~~~l~~~~~~~gi 248 (367)
.....++|++|++|+++||||+||||||+.++++++...+...+. .+.++|++||++++..+. +++++|+++||
T Consensus 150 ~~~~~~~~~e~~~aL~~l~~~GkIr~iGvSn~~~~~l~~~~~~~~~~~~~~~~~~q~~y~l~~r~~~~-~ll~~~~~~gi 228 (346)
T PRK10625 150 DSAPAVSLLETLDALAEQQRAGKIRYIGVSNETAFGVMRYLHLAEKHDLPRIVTIQNPYSLLNRSFEV-GLAEVSQYEGV 228 (346)
T ss_pred cccCCCCHHHHHHHHHHHHHCCCeEEEEecCCCHHHHHHHHHHHHHcCCCCcEEecCCCCcccccchh-HHHHHHHHcCC
Confidence 112457999999999999999999999999999888877766654 488999999999987655 89999999999
Q ss_pred eEEEecCCCCccccCCCCCCCCCCChhhhhhh---h-hccChHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCC--eeecC
Q 017700 249 RLISYSPLGLGMLTGKYTPSKLPRGPRALLFR---Q-ILPGLKPLLRSLKEIAERRGKTIPQVAINWCICKGT--IPIPG 322 (367)
Q Consensus 249 ~v~a~~pl~~G~L~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~l~~la~~~g~t~~qlal~~~l~~~~--~vi~g 322 (367)
++++|+||++|+|++++.....|.+.+...|. . ..+....+++.+.++|+++|+|++|+||+|+++++. ++|+|
T Consensus 229 ~via~spL~~G~Ltg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~g~t~aqval~w~l~~~~v~~~I~G 308 (346)
T PRK10625 229 ELLAYSCLAFGTLTGKYLNGAKPAGARNTLFSRFTRYSGEQTQKAVAAYVDIAKRHGLDPAQMALAFVRRQPFVASTLLG 308 (346)
T ss_pred eEEEeccccCeeccCCCCCCCCCCCcccccccccccccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeeEEeC
Confidence 99999999999999987554334332211121 1 113345667899999999999999999999999997 58999
Q ss_pred CCCHHHHHHHHhccCCCCCHHHHHHHHHHHhhC
Q 017700 323 VKSVKQVEENLGALGWRLSSDELLELEYAALES 355 (367)
Q Consensus 323 ~~~~e~l~enl~a~~~~L~~e~~~~l~~~~~~~ 355 (367)
+++++||++|+++++++|++++++.|+++....
T Consensus 309 ~~~~~~l~en~~a~~~~L~~~~~~~l~~~~~~~ 341 (346)
T PRK10625 309 ATTMEQLKTNIESLHLTLSEEVLAEIEAVHQVY 341 (346)
T ss_pred CCCHHHHHHHHhhccCCCCHHHHHHHHHHHhhc
Confidence 999999999999999999999999999987643
No 5
>PRK09912 L-glyceraldehyde 3-phosphate reductase; Provisional
Probab=100.00 E-value=4.2e-58 Score=441.89 Aligned_cols=303 Identities=25% Similarity=0.392 Sum_probs=253.1
Q ss_pred CCcceeecC--CcccCcceecccc-cCCCCcCCCCCCCHHHHHHHHHHHHHCCCCEEeCCCCcCCCCCCChHHHHHHHHH
Q 017700 37 WPWEKVKMG--PLSASPMGFGTWA-WGNQFLWGYQESMDSQLQQTFNLAVENGINLFDTADSYGTGRLNGKSEKLLGKFI 113 (367)
Q Consensus 37 ~~m~~~~lg--g~~vs~lglGt~~-~g~~~~~g~~~~~~~~a~~~l~~A~~~Gi~~~DTA~~Yg~~~~~g~sE~~lG~al 113 (367)
..|+||+|| |++||+||||||+ +|. ..+.+++.++|+.|++.|||+||||+.||+ .+|.||+.||++|
T Consensus 11 ~~m~~r~lg~tg~~vs~lglG~~~~~g~-------~~~~~~~~~~l~~A~~~Gin~~DTA~~YG~--~~g~sE~~lG~~l 81 (346)
T PRK09912 11 GQMQYRYCGKSGLRLPALSLGLWHNFGH-------VNALESQRAILRKAFDLGITHFDLANNYGP--PPGSAEENFGRLL 81 (346)
T ss_pred CCcceeecCCCCcccccccccCccccCC-------CCCHHHHHHHHHHHHHCCCCEEEChhhhCC--CCCCcHHHHHHHH
Confidence 349999999 9999999999997 331 134578899999999999999999999993 1278999999999
Q ss_pred hhCCCCCCCCCcEEEEeeccCC--C----CCCChHHHHHHHHHHHhhhCCCcEEEEEeccCCCCCCChhHHHHHHHHHHH
Q 017700 114 SEIPGQKQVQNNIVIATKFAAY--P----WRLTPGQFVNACRASLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAM 187 (367)
Q Consensus 114 ~~~~~~~~~R~~v~i~tK~~~~--~----~~~~~~~i~~~l~~sL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~~~~L~~l 187 (367)
++... ..|++++|+||+|.. + .+.+++.+++++++||++||+||||+|+||||+.. .+ .+++|++|++|
T Consensus 82 ~~~~~--~~Rd~~~I~TK~g~~~~~~~~~~~~s~~~i~~~~e~SL~rLg~d~iDl~~lH~~~~~-~~--~~e~~~al~~l 156 (346)
T PRK09912 82 REDFA--AYRDELIISTKAGYDMWPGPYGSGGSRKYLLASLDQSLKRMGLEYVDIFYSHRVDEN-TP--MEETASALAHA 156 (346)
T ss_pred Hhccc--CCCCeEEEEEEecccCCCCcCCCCCCHHHHHHHHHHHHHHHCCCcEEEEEeCCCCCC-CC--HHHHHHHHHHH
Confidence 86421 269999999998742 1 13479999999999999999999999999998643 34 45689999999
Q ss_pred HHcCcEeEEeecCCChHHHHHHHHHHHhcCCCceeEEeeecccccccchhhHHHHHHHcCCeEEEecCCCCccccCCCCC
Q 017700 188 YEKGLVRAVGVSNYGPNQLVKIHDYLTARGVPLCSAQVQFSLLSMGENQLEIKNICDSLGIRLISYSPLGLGMLTGKYTP 267 (367)
Q Consensus 188 ~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~v~a~~pl~~G~L~~~~~~ 267 (367)
+++||||+||||||++++++++.+.+...+++++++|++||++++..+..+++++|+++||++++|+||++|+|++++..
T Consensus 157 ~~~GkIr~iGvSn~~~~~~~~~~~~~~~~~~~~~~~Q~~ynll~~~~~~~~ll~~~~~~gI~via~spl~~G~Lt~~~~~ 236 (346)
T PRK09912 157 VQSGKALYVGISSYSPERTQKMVELLREWKIPLLIHQPSYNLLNRWVDKSGLLDTLQNNGVGCIAFTPLAQGLLTGKYLN 236 (346)
T ss_pred HHcCCeeEEEecCCCHHHHHHHHHHHHhcCCCcEEeeccCCceecccchhhHHHHHHHcCceEEEehhhcCccccCCCCC
Confidence 99999999999999999999888877766778899999999999876655799999999999999999999999998754
Q ss_pred CCCCCChhh-------hhhhh--hccChHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCC--eeecCCCCHHHHHHHHhcc
Q 017700 268 SKLPRGPRA-------LLFRQ--ILPGLKPLLRSLKEIAERRGKTIPQVAINWCICKGT--IPIPGVKSVKQVEENLGAL 336 (367)
Q Consensus 268 ~~~~~~~~~-------~~~~~--~~~~~~~~~~~l~~la~~~g~t~~qlal~~~l~~~~--~vi~g~~~~e~l~enl~a~ 336 (367)
.. |.+.+. ..|.+ ..+...++++.+.++|+++|+|++|+||+|+++++. ++|+|+++++||++|++++
T Consensus 237 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~g~t~aq~AL~w~l~~~~v~~~i~G~~~~~ql~en~~a~ 315 (346)
T PRK09912 237 GI-PQDSRMHREGNKVRGLTPKMLTEANLNSLRLLNEMAQQRGQSMAQMALSWLLKDERVTSVLIGASRAEQLEENVQAL 315 (346)
T ss_pred CC-CCCccccccccchhhhchhhccHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeEEEeCCCCHHHHHHHHhhh
Confidence 31 222110 01111 123345677899999999999999999999999985 7999999999999999998
Q ss_pred C-CCCCHHHHHHHHHHHhh
Q 017700 337 G-WRLSSDELLELEYAALE 354 (367)
Q Consensus 337 ~-~~L~~e~~~~l~~~~~~ 354 (367)
. ++|++++++.|+++.+.
T Consensus 316 ~~~~L~~e~~~~l~~~~~~ 334 (346)
T PRK09912 316 NNLTFSTEELAQIDQHIAD 334 (346)
T ss_pred cCCCCCHHHHHHHHHhhCc
Confidence 4 89999999999998754
No 6
>TIGR01293 Kv_beta voltage-dependent potassium channel beta subunit, animal. Plant beta subunits and their closely related bacterial homologs (in Deinococcus radiudurans, Xylella fastidiosa, etc.) appear more closely related to each other than to animal forms. However, the bacterial species lack convincing counterparts the Kv alpha subunit and the Kv beta homolog may serve as an enzyme. Cutoffs are set for this model such that yeast and plant forms and bacterial close homologs score between trusted and noise cutoffs.
Probab=100.00 E-value=3.4e-58 Score=437.89 Aligned_cols=294 Identities=29% Similarity=0.459 Sum_probs=247.2
Q ss_pred eeecC--CcccCcceecccccCCCCcCCCCCCCHHHHHHHHHHHHHCCCCEEeCCCCcCCCCCCChHHHHHHHHHhhCCC
Q 017700 41 KVKMG--PLSASPMGFGTWAWGNQFLWGYQESMDSQLQQTFNLAVENGINLFDTADSYGTGRLNGKSEKLLGKFISEIPG 118 (367)
Q Consensus 41 ~~~lg--g~~vs~lglGt~~~g~~~~~g~~~~~~~~a~~~l~~A~~~Gi~~~DTA~~Yg~~~~~g~sE~~lG~al~~~~~ 118 (367)
||+|| |++||+||||||++++ ...+++++.++|+.|+++|||+||||+.||. |.||++||+||+...
T Consensus 1 ~r~lg~tg~~vs~lglGt~~~~g------~~~~~~~a~~~l~~al~~Gi~~~DTA~~Yg~----g~sE~~lG~~l~~~~- 69 (317)
T TIGR01293 1 YRNLGKSGLRVSCLGLGTWVTFG------GQISDEMAEQLLTLAYENGINLFDTAEVYAA----GKAEVVLGNILKKKG- 69 (317)
T ss_pred CcccCCCCCeecceeecCCccCC------CCCCHHHHHHHHHHHHHcCCCeEECccccCC----CccHHHHHHHHHhcC-
Confidence 57888 9999999999997422 1246789999999999999999999999998 889999999998632
Q ss_pred CCCCCCcEEEEeeccCC-----CCCCChHHHHHHHHHHHhhhCCCcEEEEEeccCCCCCCChhHHHHHHHHHHHHHcCcE
Q 017700 119 QKQVQNNIVIATKFAAY-----PWRLTPGQFVNACRASLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKGLV 193 (367)
Q Consensus 119 ~~~~R~~v~i~tK~~~~-----~~~~~~~~i~~~l~~sL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~~~~L~~l~~~G~i 193 (367)
..|++++|+||++.. ..+++++.+++++++||++|||||||+|++|||+.. .+ .+++|++|++|+++|||
T Consensus 70 --~~R~~~~iaTK~~~~~~~~~~~~~~~~~i~~~~~~SL~rL~td~iDl~~lH~~~~~-~~--~~e~~~aL~~l~~~G~i 144 (317)
T TIGR01293 70 --WRRSSYVITTKIFWGGKAETERGLSRKHIIEGLKASLERLQLEYVDIVFANRPDPN-TP--MEETVRAMTYVINQGMA 144 (317)
T ss_pred --CCcccEEEEeeeccCCCCCCCCCCCHHHHHHHHHHHHHHhCCCcEeEEEeccCCCC-CC--HHHHHHHHHHHHHcCCe
Confidence 369999999998532 124579999999999999999999999999999642 34 34689999999999999
Q ss_pred eEEeecCCChHHHHHHHHHHHhcC-CCceeEEeeecccccccchhhHHHHHHHcCCeEEEecCCCCccccCCCCCCCCCC
Q 017700 194 RAVGVSNYGPNQLVKIHDYLTARG-VPLCSAQVQFSLLSMGENQLEIKNICDSLGIRLISYSPLGLGMLTGKYTPSKLPR 272 (367)
Q Consensus 194 r~iGvS~~~~~~l~~~~~~~~~~~-~~~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~v~a~~pl~~G~L~~~~~~~~~~~ 272 (367)
|+||||||+.+++.++...+...+ ++++++|++||++++...+..++++|+++||++++|+||++|+|++++... .|.
T Consensus 145 r~iGvSn~~~~~l~~~~~~~~~~~~~~~~~~Q~~~~l~~r~~~e~~l~~~~~~~gi~v~a~spl~~G~Ltg~~~~~-~~~ 223 (317)
T TIGR01293 145 MYWGTSRWSSMEIMEAYSVARQFNLIPPICEQAEYHMFQREKVEVQLPELYHKIGVGAMTWSPLACGLVSGKYDSG-IPP 223 (317)
T ss_pred eEEEecCCCHHHHHHHHHHHHHcCCCCcceeccccChHhcchhHHHHHHHHHHcCCeEEEeccccccccCCCCCCC-CCC
Confidence 999999999999988877776666 478999999999998753348999999999999999999999999987543 233
Q ss_pred Chhhh-----hhhh-----hccChHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCC--eeecCCCCHHHHHHHHhccCC--
Q 017700 273 GPRAL-----LFRQ-----ILPGLKPLLRSLKEIAERRGKTIPQVAINWCICKGT--IPIPGVKSVKQVEENLGALGW-- 338 (367)
Q Consensus 273 ~~~~~-----~~~~-----~~~~~~~~~~~l~~la~~~g~t~~qlal~~~l~~~~--~vi~g~~~~e~l~enl~a~~~-- 338 (367)
+.+.. ++.. ........++.+.++|+++|+|++|+||+|+++++. ++|+|+++++||++|++++++
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~aqlal~w~l~~~~v~~~i~G~~~~~ql~en~~a~~~~~ 303 (317)
T TIGR01293 224 YSRATLKGYQWLKDKILSEEGRRQQARLKDLQAIAERLGCTLPQLAIAWCLRNEGVSSVLLGASSAEQLMENLGSLQVLP 303 (317)
T ss_pred cccccccccchhhhhhcchhhHHHHHHHHHHHHHHHHHCcCHHHHHHHHHhcCCCCeEEEeCCCCHHHHHHHHHHhhccC
Confidence 22211 1111 112245667889999999999999999999999975 689999999999999999997
Q ss_pred CCCHHHHHHHHHH
Q 017700 339 RLSSDELLELEYA 351 (367)
Q Consensus 339 ~L~~e~~~~l~~~ 351 (367)
+|+++++++|+++
T Consensus 304 ~Ls~e~~~~l~~~ 316 (317)
T TIGR01293 304 KLSSSIIHEIDSI 316 (317)
T ss_pred CCCHHHHHHHHhh
Confidence 9999999999875
No 7
>PLN02587 L-galactose dehydrogenase
Probab=100.00 E-value=2.4e-56 Score=424.79 Aligned_cols=292 Identities=26% Similarity=0.364 Sum_probs=243.7
Q ss_pred eeecC--CcccCcceecccccCCCCcCCCCCCCHHHHHHHHHHHHHCCCCEEeCCCCcCCCCCCChHHHHHHHHHhhCCC
Q 017700 41 KVKMG--PLSASPMGFGTWAWGNQFLWGYQESMDSQLQQTFNLAVENGINLFDTADSYGTGRLNGKSEKLLGKFISEIPG 118 (367)
Q Consensus 41 ~~~lg--g~~vs~lglGt~~~g~~~~~g~~~~~~~~a~~~l~~A~~~Gi~~~DTA~~Yg~~~~~g~sE~~lG~al~~~~~ 118 (367)
||+|| |++||+||||||+||+. |+ ..+++++.++|+.|+++|||+||||+.||. |.||+.+|++|++++
T Consensus 1 ~r~lg~t~~~vs~lglG~~~~g~~--~~--~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~----g~sE~~lG~al~~~~- 71 (314)
T PLN02587 1 LRELGSTGLKVSSVGFGASPLGSV--FG--PVSEEDAIASVREAFRLGINFFDTSPYYGG----TLSEKVLGKALKALG- 71 (314)
T ss_pred CCcCCCCCCcccCcccccccccCC--CC--CCCHHHHHHHHHHHHHcCCCEEECcCccCC----CchHHHHHHHHHhCC-
Confidence 68899 99999999999999853 43 467789999999999999999999999998 999999999998754
Q ss_pred CCCCCCcEEEEeeccCCC--CCCChHHHHHHHHHHHhhhCCCcEEEEEeccCCCCCCChhHHHHHHHHHHHHHcCcEeEE
Q 017700 119 QKQVQNNIVIATKFAAYP--WRLTPGQFVNACRASLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKGLVRAV 196 (367)
Q Consensus 119 ~~~~R~~v~i~tK~~~~~--~~~~~~~i~~~l~~sL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~~~~L~~l~~~G~ir~i 196 (367)
..|++++|+||++... .+++++.+++++++||++||+||||+|+||||+........+++|++|++|+++||||+|
T Consensus 72 --~~R~~v~I~TK~~~~~~~~~~~~~~i~~~~e~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~Gkir~i 149 (314)
T PLN02587 72 --IPREKYVVSTKCGRYGEGFDFSAERVTKSVDESLARLQLDYVDILHCHDIEFGSLDQIVNETIPALQKLKESGKVRFI 149 (314)
T ss_pred --CCcceEEEEeccccCCCCCCCCHHHHHHHHHHHHHHhCCCCeeEEEecCCCCcchhhhHHHHHHHHHHHHHCCCeEEE
Confidence 3799999999998532 356899999999999999999999999999985321112234689999999999999999
Q ss_pred eecCCChHHHHHHHHHHHhcCCCceeEEeeecccccccchhhHHHHHHHcCCeEEEecCCCCccccCCCCCCCCCCChhh
Q 017700 197 GVSNYGPNQLVKIHDYLTARGVPLCSAQVQFSLLSMGENQLEIKNICDSLGIRLISYSPLGLGMLTGKYTPSKLPRGPRA 276 (367)
Q Consensus 197 GvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~v~a~~pl~~G~L~~~~~~~~~~~~~~~ 276 (367)
|||||+.++++.+.+.+....+.+..+|+.||++++.. . +++++|+++||++++|+||++|+|+++......+.
T Consensus 150 GvSn~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~-~ll~~~~~~gi~v~a~spl~~G~L~~~~~~~~~~~---- 223 (314)
T PLN02587 150 GITGLPLAIFTYVLDRVPPGTVDVILSYCHYSLNDSSL-E-DLLPYLKSKGVGVISASPLAMGLLTENGPPEWHPA---- 223 (314)
T ss_pred EecCCCHHHHHHHHHhhhcCCCCeEEeccccCcchhhH-H-HHHHHHHHcCceEEEechhhccccCCCCCCCCCCC----
Confidence 99999999888777654332245556789999987643 3 89999999999999999999999998642211110
Q ss_pred hhhhhhccChHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCC--eeecCCCCHHHHHHHHhccC----CCCCHHHHHHHHH
Q 017700 277 LLFRQILPGLKPLLRSLKEIAERRGKTIPQVAINWCICKGT--IPIPGVKSVKQVEENLGALG----WRLSSDELLELEY 350 (367)
Q Consensus 277 ~~~~~~~~~~~~~~~~l~~la~~~g~t~~qlal~~~l~~~~--~vi~g~~~~e~l~enl~a~~----~~L~~e~~~~l~~ 350 (367)
.+....+++.++++|+++|+|++|+||+|+++++. ++|+|+++++||++|+++++ .+|+++++++|++
T Consensus 224 ------~~~~~~~~~~l~~~a~~~~~s~aq~al~~~l~~~~v~~~i~G~~~~~~l~~nl~a~~~~~~~~l~~~~~~~l~~ 297 (314)
T PLN02587 224 ------PPELKSACAAAATHCKEKGKNISKLALQYSLSNKDISTTLVGMNSVQQVEENVAAATELETSGIDEELLSEVEA 297 (314)
T ss_pred ------CHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeeEEecCCCHHHHHHHHHHHhhcccCCCCHHHHHHHHH
Confidence 12334566789999999999999999999999996 68999999999999999976 3799999999999
Q ss_pred HHhhC
Q 017700 351 AALES 355 (367)
Q Consensus 351 ~~~~~ 355 (367)
+....
T Consensus 298 ~~~~~ 302 (314)
T PLN02587 298 ILAPV 302 (314)
T ss_pred hhccc
Confidence 88643
No 8
>PRK10376 putative oxidoreductase; Provisional
Probab=100.00 E-value=2.2e-54 Score=406.71 Aligned_cols=270 Identities=24% Similarity=0.361 Sum_probs=231.3
Q ss_pred eeecCCcccCcceecccccCCCCcCCCCCCCHHHHHHHHHHHHHCCCCEEeCCCCcCCCCCCChHHHHHHHHHhhCCCCC
Q 017700 41 KVKMGPLSASPMGFGTWAWGNQFLWGYQESMDSQLQQTFNLAVENGINLFDTADSYGTGRLNGKSEKLLGKFISEIPGQK 120 (367)
Q Consensus 41 ~~~lgg~~vs~lglGt~~~g~~~~~g~~~~~~~~a~~~l~~A~~~Gi~~~DTA~~Yg~~~~~g~sE~~lG~al~~~~~~~ 120 (367)
+++|+|++||+||||||++|+.+.||. ..+++++.++|+.|+++|||+||||+.||+ |.+|+.+|++++.
T Consensus 9 ~~~l~g~~vs~iglG~~~lg~~~~~g~-~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~----~~sE~~lg~~l~~----- 78 (290)
T PRK10376 9 TFTLGGRSVNRLGYGAMQLAGPGVFGP-PKDRDAAIAVLREAVALGVNHIDTSDFYGP----HVTNQLIREALHP----- 78 (290)
T ss_pred ceecCCeeecccceeccccCCCCcCCC-CCCHHHHHHHHHHHHHcCCCeEEChhhcCC----CcHHHHHHHHHhc-----
Confidence 355679999999999999987544653 346789999999999999999999999998 8899999999965
Q ss_pred CCCCcEEEEeeccCC-------CCCCChHHHHHHHHHHHhhhCCCcEEEEEeccCCCCCCC--hhHHHHHHHHHHHHHcC
Q 017700 121 QVQNNIVIATKFAAY-------PWRLTPGQFVNACRASLARLQIEQIGIGQLHWSTANYAP--PQELALWNGLVAMYEKG 191 (367)
Q Consensus 121 ~~R~~v~i~tK~~~~-------~~~~~~~~i~~~l~~sL~~Lg~d~iDl~~lH~~~~~~~~--~~~~~~~~~L~~l~~~G 191 (367)
.|++++|+||++.. ....+++.+++++++||++|||||||+|++|+++..+.+ ....++|++|++|+++|
T Consensus 79 -~R~~~~i~TK~g~~~~~~~~~~~~~~~~~i~~~~e~SL~rL~td~iDl~~~H~~~~~h~p~~~~~~~~~~~l~~l~~~G 157 (290)
T PRK10376 79 -YPDDLTIVTKVGARRGEDGSWLPAFSPAELRRAVHDNLRNLGLDVLDVVNLRLMGDGHGPAEGSIEEPLTVLAELQRQG 157 (290)
T ss_pred -CCCeEEEEeeecccCCCCCccCCCCCHHHHHHHHHHHHHHhCCCeEEEEEEeccCCCCCCCCCCHHHHHHHHHHHHHCC
Confidence 58999999998642 234579999999999999999999999999985321111 22456999999999999
Q ss_pred cEeEEeecCCChHHHHHHHHHHHhcCCCceeEEeeecccccccchhhHHHHHHHcCCeEEEecCCCCccccCCCCCCCCC
Q 017700 192 LVRAVGVSNYGPNQLVKIHDYLTARGVPLCSAQVQFSLLSMGENQLEIKNICDSLGIRLISYSPLGLGMLTGKYTPSKLP 271 (367)
Q Consensus 192 ~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~v~a~~pl~~G~L~~~~~~~~~~ 271 (367)
|||+||||||+.++++++.+. .+++++|++||++++.. . +++++|+++||++++|+||+++..
T Consensus 158 kir~iGvSn~~~~~l~~~~~~-----~~~~~~q~~~~~~~~~~-~-~~~~~~~~~gi~v~a~~pL~g~~~---------- 220 (290)
T PRK10376 158 LVRHIGLSNVTPTQVAEARKI-----AEIVCVQNHYNLAHRAD-D-ALIDALARDGIAYVPFFPLGGFTP---------- 220 (290)
T ss_pred ceeEEEecCCCHHHHHHHHhh-----CCeEEEecccCCCcCCh-H-HHHHHHHHcCCEEEEeecCCCCCh----------
Confidence 999999999999999888775 57899999999998763 3 799999999999999999974310
Q ss_pred CChhhhhhhhhccChHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCC--eeecCCCCHHHHHHHHhccCCCCCHHHHHHHH
Q 017700 272 RGPRALLFRQILPGLKPLLRSLKEIAERRGKTIPQVAINWCICKGT--IPIPGVKSVKQVEENLGALGWRLSSDELLELE 349 (367)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~l~~la~~~g~t~~qlal~~~l~~~~--~vi~g~~~~e~l~enl~a~~~~L~~e~~~~l~ 349 (367)
+ ..+.+.++|+++|+|++|+||+|+++++. ++|+|+++++||++|+++++++|++++++.|+
T Consensus 221 -------~---------~~~~l~~ia~~~~~t~aq~al~w~l~~~~~~~~i~G~~~~~~l~en~~a~~~~L~~e~~~~l~ 284 (290)
T PRK10376 221 -------L---------QSSTLSDVAASLGATPMQVALAWLLQRSPNILLIPGTSSVAHLRENLAAAELVLSEEVLAELD 284 (290)
T ss_pred -------h---------hhHHHHHHHHHhCCCHHHHHHHHHHhCCCCeeEeeCCCCHHHHHHHHhhccCCCCHHHHHHHH
Confidence 0 01688999999999999999999998853 78999999999999999999999999999999
Q ss_pred HHHhh
Q 017700 350 YAALE 354 (367)
Q Consensus 350 ~~~~~ 354 (367)
++.++
T Consensus 285 ~~~~~ 289 (290)
T PRK10376 285 GIARE 289 (290)
T ss_pred HHHhc
Confidence 98764
No 9
>KOG1577 consensus Aldo/keto reductase family proteins [General function prediction only]
Probab=100.00 E-value=1.8e-54 Score=395.47 Aligned_cols=268 Identities=27% Similarity=0.467 Sum_probs=235.7
Q ss_pred eeecC-CcccCcceecccccCCCCcCCCCCCCHHHHHHHHHHHHHCCCCEEeCCCCcCCCCCCChHHHHHHHHHhhCC-C
Q 017700 41 KVKMG-PLSASPMGFGTWAWGNQFLWGYQESMDSQLQQTFNLAVENGINLFDTADSYGTGRLNGKSEKLLGKFISEIP-G 118 (367)
Q Consensus 41 ~~~lg-g~~vs~lglGt~~~g~~~~~g~~~~~~~~a~~~l~~A~~~Gi~~~DTA~~Yg~~~~~g~sE~~lG~al~~~~-~ 118 (367)
.++|. |.++|.||||||+. +..++.+.++.|++.|+||||||..||+ |+.+|++|+++- +
T Consensus 6 ~~~Ln~G~~mP~iGlGTw~~-----------~~~~~~~aV~~Al~~GYRHIDtA~~Y~N-------E~evG~aik~~i~~ 67 (300)
T KOG1577|consen 6 TVKLNNGFKMPIIGLGTWQS-----------PPGQVAEAVKAAIKAGYRHIDTAHVYGN-------EKEVGEAIKELLAE 67 (300)
T ss_pred eEeccCCCccceeeeEeccc-----------ChhhHHHHHHHHHHhCcceeechhhhCC-------hHHHHHHHHHHhhh
Confidence 68888 99999999999982 3478999999999999999999999999 999999999763 4
Q ss_pred CCCCCCcEEEEeeccCCCCCCChHHHHHHHHHHHhhhCCCcEEEEEeccCCCCC-------------CChhHHHHHHHHH
Q 017700 119 QKQVQNNIVIATKFAAYPWRLTPGQFVNACRASLARLQIEQIGIGQLHWSTANY-------------APPQELALWNGLV 185 (367)
Q Consensus 119 ~~~~R~~v~i~tK~~~~~~~~~~~~i~~~l~~sL~~Lg~d~iDl~~lH~~~~~~-------------~~~~~~~~~~~L~ 185 (367)
.++.|+++||+||+++.. ..++.++.++++||++||+||+|||++|||-... ......++|++||
T Consensus 68 ~~v~RediFiTSKlw~~~--~~~~~v~~al~~sLk~L~ldYvDLyLiH~P~~~k~~~~~~~~~~~~~~~~~~~~tW~amE 145 (300)
T KOG1577|consen 68 GGVKREDIFITSKLWPTD--HAPELVEKALEKSLKKLQLDYVDLYLIHWPVAFKDSFPKDENGKVNYDDVDRIETWKAME 145 (300)
T ss_pred CCcchhhheeeeccCccc--cChhhHHHHHHHHHHHhChhhhheeeEecccccCCCCCcccccccccccchHHHHHHHHH
Confidence 678999999999998753 3799999999999999999999999999995420 1124567999999
Q ss_pred HHHHcCcEeEEeecCCChHHHHHHHHHHHhcCCCceeEEeeecccccccchhhHHHHHHHcCCeEEEecCCCCccccCCC
Q 017700 186 AMYEKGLVRAVGVSNYGPNQLVKIHDYLTARGVPLCSAQVQFSLLSMGENQLEIKNICDSLGIRLISYSPLGLGMLTGKY 265 (367)
Q Consensus 186 ~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~v~a~~pl~~G~L~~~~ 265 (367)
++++.|++|+||||||+..++++++..++ ++|.++|++++|.- .+..++++|+++||-|.||||||.+-- ++
T Consensus 146 ~~~~~Gl~rsIGVSNF~~~~le~ll~~~k---i~P~vnQvE~HP~~---~Q~~L~~fCk~~~I~v~AYSpLg~~~~-~~- 217 (300)
T KOG1577|consen 146 KLVDEGLVRSIGVSNFNIKQLEELLNLAK---IKPAVNQVECHPYL---QQKKLVEFCKSKGIVVTAYSPLGSPGR-GS- 217 (300)
T ss_pred HHHHcCCceEeeeecCCHHHHHHHHhcCC---CCCccceeeccCCc---ChHHHHHHHhhCCcEEEEecCCCCCCC-cc-
Confidence 99999999999999999999999999874 89999999999974 334899999999999999999998632 00
Q ss_pred CCCCCCCChhhhhhhhhccChHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCCeeecCCCCHHHHHHHHhccCCCCCHHHH
Q 017700 266 TPSKLPRGPRALLFRQILPGLKPLLRSLKEIAERRGKTIPQVAINWCICKGTIPIPGVKSVKQVEENLGALGWRLSSDEL 345 (367)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~g~t~~qlal~~~l~~~~~vi~g~~~~e~l~enl~a~~~~L~~e~~ 345 (367)
..+.+ +.+.+||++||.|++|++|||.+++|.+|||.+++++|++||++++++.||++|+
T Consensus 218 -----------~ll~~---------~~l~~iA~K~~kt~aQIlLrw~~q~g~~vipKS~~~~Ri~eN~~vfdf~Lt~ed~ 277 (300)
T KOG1577|consen 218 -----------DLLED---------PVLKEIAKKYNKTPAQILLRWALQRGVSVIPKSSNPERIKENFKVFDFELTEEDM 277 (300)
T ss_pred -----------ccccC---------HHHHHHHHHhCCCHHHHHHHHHHhCCcEEEeccCCHHHHHHHHhhccccCCHHHH
Confidence 11111 7999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCC
Q 017700 346 LELEYAALESP 356 (367)
Q Consensus 346 ~~l~~~~~~~~ 356 (367)
+.|+......+
T Consensus 278 ~~i~~~~~~~r 288 (300)
T KOG1577|consen 278 KKLDSLNSNER 288 (300)
T ss_pred HHHhhccccce
Confidence 99997776654
No 10
>cd06660 Aldo_ket_red Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. AKRs are present in all phyla and are of importance to both health and industrial applications. Members have very distinct functions and include the prokaryotic 2,5-diketo-D-gluconic acid reductases and beta-keto ester reductases, the eukaryotic aldose reductases, aldehyde reductases, hydroxysteroid dehydrogenases, steroid 5beta-reductases, potassium channel beta-subunits and aflatoxin aldehyde reductases, among others.
Probab=100.00 E-value=2.2e-53 Score=399.17 Aligned_cols=277 Identities=38% Similarity=0.617 Sum_probs=242.1
Q ss_pred eeecC--CcccCcceecccccCCCCcCCCCCCCHHHHHHHHHHHHHCCCCEEeCCCCcCCCCCCChHHHHHHHHHhhCCC
Q 017700 41 KVKMG--PLSASPMGFGTWAWGNQFLWGYQESMDSQLQQTFNLAVENGINLFDTADSYGTGRLNGKSEKLLGKFISEIPG 118 (367)
Q Consensus 41 ~~~lg--g~~vs~lglGt~~~g~~~~~g~~~~~~~~a~~~l~~A~~~Gi~~~DTA~~Yg~~~~~g~sE~~lG~al~~~~~ 118 (367)
+|+|| |+.||+||||||.++.. | .+++++.++|+.|+++|||+||||+.||+ |.+|+.+|++|+.++
T Consensus 1 ~r~lg~tg~~vs~lg~G~~~~~~~--~----~~~~~~~~~l~~A~~~Gi~~iDTA~~Yg~----g~sE~~lG~al~~~~- 69 (285)
T cd06660 1 YRTLGKTGLKVSRLGLGTWQLGGG--Y----VDEEEAAAAVRAALDAGINFIDTADVYGD----GESEELLGEALKERG- 69 (285)
T ss_pred CcccCCCCceecCcceeccccCCC--C----CCHHHHHHHHHHHHHcCCCeEECccccCC----CCCHHHHHHHHhccC-
Confidence 57888 99999999999998753 1 46789999999999999999999999998 899999999999842
Q ss_pred CCCCCCcEEEEeeccCCC---CCCChHHHHHHHHHHHhhhCCCcEEEEEeccCCCCCCChhHHHHHHHHHHHHHcCcEeE
Q 017700 119 QKQVQNNIVIATKFAAYP---WRLTPGQFVNACRASLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKGLVRA 195 (367)
Q Consensus 119 ~~~~R~~v~i~tK~~~~~---~~~~~~~i~~~l~~sL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~~~~L~~l~~~G~ir~ 195 (367)
.|++++|+||++... ...+++.+++++++||++||+||||+|+||||+... . ...++|++|+++|++|+||+
T Consensus 70 ---~R~~~~i~tK~~~~~~~~~~~~~~~~~~~l~~sL~~L~~~~iDl~~lh~~~~~~-~-~~~~~~~~l~~l~~~G~ir~ 144 (285)
T cd06660 70 ---PREEVFIATKVGPRPGDGRDLSPEHIRRAVEESLKRLGTDYIDLYLLHWPDPDT-P-DIEETLRALEELVKEGKIRA 144 (285)
T ss_pred ---CcCcEEEEeeecCCCCCCCCCCHHHHHHHHHHHHHHhCCCceeEEEecCCCCCC-C-CHHHHHHHHHHHHHcCCccE
Confidence 499999999998653 235899999999999999999999999999986432 2 35679999999999999999
Q ss_pred EeecCCChHHHHHHHHHHHhcCCCceeEEeeecccccccchhhHHHHHHHcCCeEEEecCCCCccccCCCCCCCCCCChh
Q 017700 196 VGVSNYGPNQLVKIHDYLTARGVPLCSAQVQFSLLSMGENQLEIKNICDSLGIRLISYSPLGLGMLTGKYTPSKLPRGPR 275 (367)
Q Consensus 196 iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~v~a~~pl~~G~L~~~~~~~~~~~~~~ 275 (367)
||||||+.+.++++.+.+ ..+++++|++||++++.... +++++|+++||++++|+||++|.|+++......+..
T Consensus 145 iGvS~~~~~~l~~~~~~~---~~~~~~~q~~~n~~~~~~~~-~~~~~~~~~gi~v~~~~~l~~g~l~~~~~~~~~~~~-- 218 (285)
T cd06660 145 IGVSNFSAEQLEEALAAA---GVPPAVNQVEYNLLDRQAEE-ELLPYCREHGIGVIAYSPLAGGLLTGKYLPGAPPPE-- 218 (285)
T ss_pred EEeeCCCHHHHHHHHHhh---CCCceEEecccCcccCchHH-HHHHHHHHcCcEEEEeccccCceecCCCCCCCCCCh--
Confidence 999999999888888764 36899999999999988765 799999999999999999999999876543211110
Q ss_pred hhhhhhhccChHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCC--eeecCCCCHHHHHHHHhccCCCCCHHHHHHHHH
Q 017700 276 ALLFRQILPGLKPLLRSLKEIAERRGKTIPQVAINWCICKGT--IPIPGVKSVKQVEENLGALGWRLSSDELLELEY 350 (367)
Q Consensus 276 ~~~~~~~~~~~~~~~~~l~~la~~~g~t~~qlal~~~l~~~~--~vi~g~~~~e~l~enl~a~~~~L~~e~~~~l~~ 350 (367)
......+..++++++++++|+|++|+++++. ++|+|+++++||++|++++.++|++++++.|++
T Consensus 219 -----------~~~~~~~~~~~~~~~~s~~q~al~~~l~~p~~~~~i~g~~~~~~l~~n~~~~~~~L~~~~~~~l~~ 284 (285)
T cd06660 219 -----------GDLLEALKEIAEKHGVTPAQVALRWLLQQPGVTSVIPGASSPERLEENLAALDFELSDEDLAALDA 284 (285)
T ss_pred -----------hhHHHHHHHHHHHhCCCHHHHHHHHHhcCCCCeEEEeCCCCHHHHHHHHhhccCCCCHHHHHHHhh
Confidence 1134789999999999999999999999974 899999999999999999999999999999975
No 11
>PRK11172 dkgB 2,5-diketo-D-gluconate reductase B; Provisional
Probab=100.00 E-value=1.6e-53 Score=396.27 Aligned_cols=251 Identities=22% Similarity=0.371 Sum_probs=221.7
Q ss_pred ccCcceecccccCCCCcCCCCCCCHHHHHHHHHHHHHCCCCEEeCCCCcCCCCCCChHHHHHHHHHhhCCCCCCCCCcEE
Q 017700 48 SASPMGFGTWAWGNQFLWGYQESMDSQLQQTFNLAVENGINLFDTADSYGTGRLNGKSEKLLGKFISEIPGQKQVQNNIV 127 (367)
Q Consensus 48 ~vs~lglGt~~~g~~~~~g~~~~~~~~a~~~l~~A~~~Gi~~~DTA~~Yg~~~~~g~sE~~lG~al~~~~~~~~~R~~v~ 127 (367)
+||.||||||+++ .+++.++++.|++.|||+||||+.||+ |+.+|++|+... ..|+++|
T Consensus 2 ~vs~lglGt~~~~-----------~~~~~~~i~~A~~~Gi~~~DTA~~Yg~-------E~~lG~al~~~~---~~R~~v~ 60 (267)
T PRK11172 2 SIPAFGLGTFRLK-----------DQVVIDSVKTALELGYRAIDTAQIYDN-------EAAVGQAIAESG---VPRDELF 60 (267)
T ss_pred CCCCEeeEccccC-----------hHHHHHHHHHHHHcCCCEEEccchhCC-------HHHHHHHHHHcC---CChhHeE
Confidence 6899999999864 368999999999999999999999996 999999998642 4799999
Q ss_pred EEeeccCCCCCCChHHHHHHHHHHHhhhCCCcEEEEEeccCCCCCCChhHHHHHHHHHHHHHcCcEeEEeecCCChHHHH
Q 017700 128 IATKFAAYPWRLTPGQFVNACRASLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKGLVRAVGVSNYGPNQLV 207 (367)
Q Consensus 128 i~tK~~~~~~~~~~~~i~~~l~~sL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~l~ 207 (367)
|+||++.. ..+++.+++++++||++||+||||+|++|||++.. .....++|++|++|+++||||+||||||+.++++
T Consensus 61 i~TK~~~~--~~~~~~~~~~~~~SL~rL~~d~iDl~~lH~~~~~~-~~~~~~~~~~l~~l~~~Gkir~iGvSn~~~~~l~ 137 (267)
T PRK11172 61 ITTKIWID--NLAKDKLIPSLKESLQKLRTDYVDLTLIHWPSPND-EVSVEEFMQALLEAKKQGLTREIGISNFTIALMK 137 (267)
T ss_pred EEEEeCCC--CCCHHHHHHHHHHHHHHhCCCceEEEEeCCCCCCC-CCCHHHHHHHHHHHHHCCCCCEEEEccCCHHHHH
Confidence 99998543 35789999999999999999999999999985431 1234568999999999999999999999999998
Q ss_pred HHHHHHHhcCC-CceeEEeeecccccccchhhHHHHHHHcCCeEEEecCCCCccccCCCCCCCCCCChhhhhhhhhccCh
Q 017700 208 KIHDYLTARGV-PLCSAQVQFSLLSMGENQLEIKNICDSLGIRLISYSPLGLGMLTGKYTPSKLPRGPRALLFRQILPGL 286 (367)
Q Consensus 208 ~~~~~~~~~~~-~~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~v~a~~pl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (367)
++.+.+ +. +++++|++||++++. .+++++|+++||++++|+||++|.+...
T Consensus 138 ~~~~~~---~~~~~~~~Q~~~~~~~~~---~~ll~~~~~~gi~v~a~spl~~G~~~~~---------------------- 189 (267)
T PRK11172 138 QAIAAV---GAENIATNQIELSPYLQN---RKVVAFAKEHGIHVTSYMTLAYGKVLKD---------------------- 189 (267)
T ss_pred HHHHhc---CCCCCeEEeeecCCCCCc---HHHHHHHHHCCCEEEEECCCCCCcccCC----------------------
Confidence 887652 23 689999999999864 3899999999999999999999865431
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHcCCCeeecCCCCHHHHHHHHhccCCCCCHHHHHHHHHHHhh
Q 017700 287 KPLLRSLKEIAERRGKTIPQVAINWCICKGTIPIPGVKSVKQVEENLGALGWRLSSDELLELEYAALE 354 (367)
Q Consensus 287 ~~~~~~l~~la~~~g~t~~qlal~~~l~~~~~vi~g~~~~e~l~enl~a~~~~L~~e~~~~l~~~~~~ 354 (367)
+.+.++|+++|+|++|+||+|+++++.++|+|+++++||++|+++++++|+++++++|+++.+.
T Consensus 190 ----~~l~~~a~~~~~s~aqval~w~l~~~~~~i~g~~~~~~l~~n~~~~~~~L~~~~~~~i~~~~~~ 253 (267)
T PRK11172 190 ----PVIARIAAKHNATPAQVILAWAMQLGYSVIPSSTKRENLASNLLAQDLQLDAEDMAAIAALDRN 253 (267)
T ss_pred ----HHHHHHHHHhCCCHHHHHHHHHHhCCCEeecCCCCHHHHHHHHhhcCCCcCHHHHHHHhhhccC
Confidence 5789999999999999999999999889999999999999999999999999999999999755
No 12
>PF00248 Aldo_ket_red: Aldo/keto reductase family; InterPro: IPR023210 The aldo-keto reductase family includes a number of related monomeric NADPH-dependent oxidoreductases, such as aldehyde reductase, aldose reductase, prostaglandin F synthase, xylose reductase, rho crystallin, and many others []. All possess a similar structure, with a beta-alpha-beta fold characteristic of nucleotide binding proteins []. The fold comprises a parallel beta-8/alpha-8-barrel, which contains a novel NADP-binding motif. The binding site is located in a large, deep, elliptical pocket in the C-terminal end of the beta sheet, the substrate being bound in an extended conformation. The hydrophobic nature of the pocket favours aromatic and apolar substrates over highly polar ones []. Binding of the NADPH coenzyme causes a massive conformational change, reorienting a loop, effectively locking the coenzyme in place. This binding is more similar to FAD- than to NAD(P)-binding oxidoreductases []. Some proteins of this entry contain a K+ ion channel beta chain regulatory domain; these are reported to have oxidoreductase activity []. This entry represents the NADP-dependent oxidoreductase domain found in these proteins.; PDB: 1C9W_A 4F40_B 1VBJ_A 1XGD_A 1X97_A 2ACS_A 1EF3_A 2ACU_A 1PWM_A 2NVD_A ....
Probab=100.00 E-value=9e-54 Score=401.36 Aligned_cols=277 Identities=33% Similarity=0.585 Sum_probs=226.7
Q ss_pred cceecccccCCCCcCCCCCCCHHHHHHHHHHHHHCCCCEEeCCCCcCCCCCCChHHHHHHHHHhhCCCCCCCCCcEEEEe
Q 017700 51 PMGFGTWAWGNQFLWGYQESMDSQLQQTFNLAVENGINLFDTADSYGTGRLNGKSEKLLGKFISEIPGQKQVQNNIVIAT 130 (367)
Q Consensus 51 ~lglGt~~~g~~~~~g~~~~~~~~a~~~l~~A~~~Gi~~~DTA~~Yg~~~~~g~sE~~lG~al~~~~~~~~~R~~v~i~t 130 (367)
+||||||++|+. ..+++++.++|+.|++.|||+||||+.||+ |.+|+.||++|+..+ ..|++++|+|
T Consensus 1 ~l~lG~~~~~~~------~~~~~~~~~~l~~a~~~Gin~~DtA~~Y~~----g~sE~~lg~~l~~~~---~~r~~~~i~t 67 (283)
T PF00248_consen 1 PLGLGTWRLGGE------RVSEEEAEAILRRALEAGINFFDTADSYGN----GRSERILGRALRKSR---VPRDDIFIST 67 (283)
T ss_dssp SBEEECTTBTTT------TSTHHHHHHHHHHHHHTT--EEEECGGGGG----GTHHHHHHHHHHHTS---STGGGSEEEE
T ss_pred CEEEEccccCCC------CCCHHHHHHHHHHHHHcCCCeecccccccc----ccccccccccccccc---cccccccccc
Confidence 589999998742 478899999999999999999999999988 889999999999943 5899999999
Q ss_pred ecc---CCCCCCChHHHHHHHHHHHhhhCCCcEEEEEeccCCCCCCChhHHHHHHHHHHHHHcCcEeEEeecCCChHHHH
Q 017700 131 KFA---AYPWRLTPGQFVNACRASLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKGLVRAVGVSNYGPNQLV 207 (367)
Q Consensus 131 K~~---~~~~~~~~~~i~~~l~~sL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~l~ 207 (367)
|+. ...+.++++.+++++++||++||+||||+|+||||+.... ...++|++|++|+++|+||+||||||+.+.++
T Consensus 68 K~~~~~~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~--~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~ 145 (283)
T PF00248_consen 68 KVYGDGKPEPDYSPDSIRESLERSLERLGTDYIDLLLLHWPDPSED--ALEEVWEALEELKKEGKIRHIGVSNFSPEQLE 145 (283)
T ss_dssp EEESSSSTGGGSSHHHHHHHHHHHHHHHTSSSEEEEEESSSSTTSS--HHHHHHHHHHHHHHTTSEEEEEEES--HHHHH
T ss_pred cccccccccccccccccccccccccccccccchhcccccccccccc--ccchhhhhhhhccccccccccccccccccccc
Confidence 992 1223558999999999999999999999999999964322 35679999999999999999999999988888
Q ss_pred HHHHHHHhcCCCceeEEeeecccccccchhhHHHHHHHcCCeEEEecCCCCccccCCCCCCCCCCChhhhhhhhhccChH
Q 017700 208 KIHDYLTARGVPLCSAQVQFSLLSMGENQLEIKNICDSLGIRLISYSPLGLGMLTGKYTPSKLPRGPRALLFRQILPGLK 287 (367)
Q Consensus 208 ~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~v~a~~pl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (367)
.+. +...++|+++|++||++++.... +++++|+++||++++|+||++|+|++++.....+..... ....+
T Consensus 146 ~~~---~~~~~~~~~~q~~~n~~~~~~~~-~l~~~~~~~gi~v~a~~~l~~G~l~~~~~~~~~~~~~~~------~~~~~ 215 (283)
T PF00248_consen 146 AAL---KIGSIPPDVVQINYNLLNRREEE-GLLEFCREHGIGVIAYSPLAGGLLTGKYKSPPPPPSRAS------LRDAQ 215 (283)
T ss_dssp HHH---TCTSS-ESEEEEE-BTTBHBGGH-HHHHHHHHTT-EEEEESTTGGGCGGTTTTTTTTSTTTSG------SSTHG
T ss_pred ccc---ccccccccccccccccccccccc-cccccccccccccccccccccCccccccccCCCcccccc------cchhh
Confidence 872 22336899999999999666665 999999999999999999999999988755432221110 01133
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHcCCC--eeecCCCCHHHHHHHHhccCCCCCHHHHHHHHHHH
Q 017700 288 PLLRSLKEIAERRGKTIPQVAINWCICKGT--IPIPGVKSVKQVEENLGALGWRLSSDELLELEYAA 352 (367)
Q Consensus 288 ~~~~~l~~la~~~g~t~~qlal~~~l~~~~--~vi~g~~~~e~l~enl~a~~~~L~~e~~~~l~~~~ 352 (367)
...+.+.++++++|+|++|+||+|+++++. ++|+|+++++||++|+++++.+||++++++|+++.
T Consensus 216 ~~~~~l~~~a~~~g~s~~q~al~~~l~~~~~~~~i~g~~~~~~l~en~~a~~~~L~~~~~~~i~~~~ 282 (283)
T PF00248_consen 216 ELADALRELAEEHGVSPAQLALRWVLSHPGVASVIVGASSPEHLEENLAALDFPLTEEELAEIDQIL 282 (283)
T ss_dssp GGHHHHHHHHHHHTSSHHHHHHHHHHTSHTTEEEEEB-SSHHHHHHHHGGSSSG--HHHHHHHHTTH
T ss_pred hhhhhhhhhhhhcccccchhhhhhhhhccccccccCCCCCHHHHHHHHHHhCCCCCHHHHHHHHhhh
Confidence 455899999999999999999999998766 89999999999999999999999999999999875
No 13
>PRK11565 dkgA 2,5-diketo-D-gluconate reductase A; Provisional
Probab=100.00 E-value=8.2e-52 Score=386.11 Aligned_cols=258 Identities=25% Similarity=0.448 Sum_probs=224.9
Q ss_pred eeecC-CcccCcceecccccCCCCcCCCCCCCHHHHHHHHHHHHHCCCCEEeCCCCcCCCCCCChHHHHHHHHHhhCCCC
Q 017700 41 KVKMG-PLSASPMGFGTWAWGNQFLWGYQESMDSQLQQTFNLAVENGINLFDTADSYGTGRLNGKSEKLLGKFISEIPGQ 119 (367)
Q Consensus 41 ~~~lg-g~~vs~lglGt~~~g~~~~~g~~~~~~~~a~~~l~~A~~~Gi~~~DTA~~Yg~~~~~g~sE~~lG~al~~~~~~ 119 (367)
+++|. |+.||.||||||+++ .+++.++|+.|++.|||+||||+.||+ |+.+|+||+..+
T Consensus 6 ~~~l~~g~~v~~lglG~~~~~-----------~~~~~~~l~~A~~~Gi~~~DTA~~Yg~-------E~~lG~al~~~~-- 65 (275)
T PRK11565 6 VIKLQDGNVMPQLGLGVWQAS-----------NEEVITAIHKALEVGYRSIDTAAIYKN-------EEGVGKALKEAS-- 65 (275)
T ss_pred eEEcCCCCccCCcceECccCC-----------HHHHHHHHHHHHHhCCCEEEchhhhCC-------HHHHHHHHHHcC--
Confidence 46675 999999999999753 478999999999999999999999996 999999998743
Q ss_pred CCCCCcEEEEeeccCCCCCCChHHHHHHHHHHHhhhCCCcEEEEEeccCCCCCCChhHHHHHHHHHHHHHcCcEeEEeec
Q 017700 120 KQVQNNIVIATKFAAYPWRLTPGQFVNACRASLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKGLVRAVGVS 199 (367)
Q Consensus 120 ~~~R~~v~i~tK~~~~~~~~~~~~i~~~l~~sL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvS 199 (367)
..|++++|+||++.. +++.+++++++||++||+||||+|+||||+....+ ..++|++|++|+++|+||+||||
T Consensus 66 -~~R~~~~i~tK~~~~----~~~~~~~~~~~sL~rL~~d~iDl~~lH~p~~~~~~--~~~~~~~l~~l~~~G~ir~iGvS 138 (275)
T PRK11565 66 -VAREELFITTKLWND----DHKRPREALEESLKKLQLDYVDLYLMHWPVPAIDH--YVEAWKGMIELQKEGLIKSIGVC 138 (275)
T ss_pred -CCHHHEEEEEEecCc----chHHHHHHHHHHHHHhCCCceEEEEecCCCCCcCc--HHHHHHHHHHHHHcCCeeEEeec
Confidence 369999999998632 67899999999999999999999999998643222 35689999999999999999999
Q ss_pred CCChHHHHHHHHHHHhcCCCceeEEeeecccccccchhhHHHHHHHcCCeEEEecCCCCccccCCCCCCCCCCChhhhhh
Q 017700 200 NYGPNQLVKIHDYLTARGVPLCSAQVQFSLLSMGENQLEIKNICDSLGIRLISYSPLGLGMLTGKYTPSKLPRGPRALLF 279 (367)
Q Consensus 200 ~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~v~a~~pl~~G~L~~~~~~~~~~~~~~~~~~ 279 (367)
||+.++++++.+. .++++.++|++|+++.+. .+++++|+++||++++|+||++|.- .. |
T Consensus 139 n~~~~~l~~~~~~---~~v~~~~~Q~~~~~~~~~---~~~~~~~~~~~i~~~a~spl~~G~~-~~--------------~ 197 (275)
T PRK11565 139 NFQIHHLQRLIDE---TGVTPVINQIELHPLMQQ---RQLHAWNATHKIQTESWSPLAQGGK-GV--------------F 197 (275)
T ss_pred cCCHHHHHHHHHh---CCCCceeeeeecCCccch---HHHHHHHHHCCCEEEEEccCCCCCc-cc--------------c
Confidence 9999998887653 346789999999999863 3799999999999999999987631 00 1
Q ss_pred hhhccChHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCCeeecCCCCHHHHHHHHhccCCCCCHHHHHHHHHHHhhC
Q 017700 280 RQILPGLKPLLRSLKEIAERRGKTIPQVAINWCICKGTIPIPGVKSVKQVEENLGALGWRLSSDELLELEYAALES 355 (367)
Q Consensus 280 ~~~~~~~~~~~~~l~~la~~~g~t~~qlal~~~l~~~~~vi~g~~~~e~l~enl~a~~~~L~~e~~~~l~~~~~~~ 355 (367)
.. +.+.++|+++|+|++|+||+|+++++.++|+|+++++|+++|+++++++|+++++++|+++...+
T Consensus 198 ~~---------~~l~~ia~~~g~s~aq~aL~w~l~~~~~~I~g~~~~~~i~~n~~a~~~~Ls~~~~~~i~~~~~~~ 264 (275)
T PRK11565 198 DQ---------KVIRDLADKYGKTPAQIVIRWHLDSGLVVIPKSVTPSRIAENFDVFDFRLDKDELGEIAKLDQGK 264 (275)
T ss_pred cC---------HHHHHHHHHhCCCHHHHHHHHHHcCCCEeeCCCCCHHHHHHHHhccCCCcCHHHHHHHHhhcccC
Confidence 11 67899999999999999999999998899999999999999999999999999999999998665
No 14
>COG4989 Predicted oxidoreductase [General function prediction only]
Probab=100.00 E-value=4.6e-52 Score=364.13 Aligned_cols=278 Identities=26% Similarity=0.407 Sum_probs=250.3
Q ss_pred cceeecC--CcccCcceecccccCCCCcCCCCCCCHHHHHHHHHHHHHCCCCEEeCCCCcCCCCCCChHHHHHHHHHhhC
Q 017700 39 WEKVKMG--PLSASPMGFGTWAWGNQFLWGYQESMDSQLQQTFNLAVENGINLFDTADSYGTGRLNGKSEKLLGKFISEI 116 (367)
Q Consensus 39 m~~~~lg--g~~vs~lglGt~~~g~~~~~g~~~~~~~~a~~~l~~A~~~Gi~~~DTA~~Yg~~~~~g~sE~~lG~al~~~ 116 (367)
|++++|| |+++|+|.+|+|++. .|+ ++.+++..+++.|++.|||+||-|+.||. |++|+++|.+|+-.
T Consensus 1 m~rI~l~~~~~e~Sriv~G~wRl~---d~~---~~~~e~~~~Ie~~le~Gitt~DhADIYGg----y~cE~~fg~aL~l~ 70 (298)
T COG4989 1 MQRITLAPDGLEFSRIVLGYWRLN---DWN---MSARELLSFIETALELGITTFDHADIYGG----YQCEALFGEALKLA 70 (298)
T ss_pred CceEEecCCCccHHHHHHHHHhhh---hcc---CCHHHHHHHHHHHHHcCcccchhhhhcCC----ccHHHHHHHHHhcC
Confidence 6789999 999999999999986 355 55689999999999999999999999999 99999999999987
Q ss_pred CCCCCCCCcEEEEeeccCC----------CCCCChHHHHHHHHHHHhhhCCCcEEEEEeccCCCCCCChhHHHHHHHHHH
Q 017700 117 PGQKQVQNNIVIATKFAAY----------PWRLTPGQFVNACRASLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVA 186 (367)
Q Consensus 117 ~~~~~~R~~v~i~tK~~~~----------~~~~~~~~i~~~l~~sL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~~~~L~~ 186 (367)
|. .|+++.|+||+|.. .++++.++|..++|+||++|+|||+|+++||+||+-. +.+++-++|..
T Consensus 71 p~---lRekieivsKCGI~~~s~~~~~~~hydts~~HI~~SVe~SL~~L~tDylD~LLiHRPDpLm---d~eeVAeAf~~ 144 (298)
T COG4989 71 PG---LREKIEIVSKCGIRLPSREEPRIGHYDTSKEHIIKSVEQSLINLKTDYLDLLLIHRPDPLM---DAEEVAEAFTH 144 (298)
T ss_pred hh---hhhheEeeeccccccccccccccccccCcHHHHHHHHHHHHHHhccchhhhhhccCCcccC---CHHHHHHHHHH
Confidence 75 89999999999842 3567999999999999999999999999999996433 45678999999
Q ss_pred HHHcCcEeEEeecCCChHHHHHHHHHHHhcCCCceeEEeeecccccccchhhHHHHHHHcCCeEEEecCCCCccccCCCC
Q 017700 187 MYEKGLVRAVGVSNYGPNQLVKIHDYLTARGVPLCSAQVQFSLLSMGENQLEIKNICDSLGIRLISYSPLGLGMLTGKYT 266 (367)
Q Consensus 187 l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~v~a~~pl~~G~L~~~~~ 266 (367)
|++.||||++|||||++.+++.+..... .+++.||+++|+++......+.+++|+.+.|.+++||||++|.++..
T Consensus 145 L~~sGKVr~fGVSNf~p~Q~~LL~s~l~---~~LvtNQlelS~~~~~~~~DGtLd~~q~~~v~pmaWSpl~gG~~F~g-- 219 (298)
T COG4989 145 LHKSGKVRHFGVSNFNPAQFELLQSRLP---FTLVTNQLELSPLHTPMLLDGTLDYCQQLRVRPMAWSPLGGGGLFLG-- 219 (298)
T ss_pred HHhcCCeeeeecCCCCHHHHHHHHHhcc---chhhhcceeeccccccccccchHHHHHHcCCCcccccccCCCccccC--
Confidence 9999999999999999999998887743 46899999999998877766899999999999999999999965432
Q ss_pred CCCCCCChhhhhhhhhccChHHHHHHHHHHHHHhC-CCHHHHHHHHHHcCCC--eeecCCCCHHHHHHHHhccCCCCCHH
Q 017700 267 PSKLPRGPRALLFRQILPGLKPLLRSLKEIAERRG-KTIPQVAINWCICKGT--IPIPGVKSVKQVEENLGALGWRLSSD 343 (367)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~g-~t~~qlal~~~l~~~~--~vi~g~~~~e~l~enl~a~~~~L~~e 343 (367)
.+.++++.+++..+|.++| +|..+++++|++.+|. .+|+|+.+++++++.+++++..|+.+
T Consensus 220 ----------------~~~~q~l~~~l~~ia~e~ga~s~~~VaiAWllR~Pa~~~PiiGt~~~eRi~~a~~Al~~~LtRq 283 (298)
T COG4989 220 ----------------DDKFQRLRKVLDRIAEEYGAVSITAVAIAWLLRHPAKPQPIIGTGNLERIRAAIKALSLTLTRQ 283 (298)
T ss_pred ----------------CcchHHHHHHHHHHHHHhCcccHHHHHHHHHHhCcCcccceecCCCHHHHHHHHHHhhccccHH
Confidence 3566778899999999999 8999999999999998 79999999999999999999999999
Q ss_pred HHHHHHHHHh
Q 017700 344 ELLELEYAAL 353 (367)
Q Consensus 344 ~~~~l~~~~~ 353 (367)
+|-+|..+..
T Consensus 284 qWf~Iy~Aa~ 293 (298)
T COG4989 284 QWFEIYTAAI 293 (298)
T ss_pred HHHHHHHHhc
Confidence 9999988763
No 15
>PRK14863 bifunctional regulator KidO; Provisional
Probab=100.00 E-value=1.4e-51 Score=387.19 Aligned_cols=273 Identities=19% Similarity=0.254 Sum_probs=223.6
Q ss_pred CcccCcceecccccCCC-CcCC--CCCCCHHHHHHHHHHHHHCCCCEEeCCCCcCCCCCCChHHHHHHHHHhhCCCCCCC
Q 017700 46 PLSASPMGFGTWAWGNQ-FLWG--YQESMDSQLQQTFNLAVENGINLFDTADSYGTGRLNGKSEKLLGKFISEIPGQKQV 122 (367)
Q Consensus 46 g~~vs~lglGt~~~g~~-~~~g--~~~~~~~~a~~~l~~A~~~Gi~~~DTA~~Yg~~~~~g~sE~~lG~al~~~~~~~~~ 122 (367)
+.+||+||||||++|+. +.|+ ++.++++++.++|+.|+++|||+||||+.||. ||+++|++|+. ..
T Consensus 2 ~~~vs~iglGt~~~g~~~~~~~~~~~~~~~~ea~~~l~~A~~~Gin~~DTA~~YG~------SE~~lG~al~~-----~~ 70 (292)
T PRK14863 2 SSPVSKLGLAAAQFGLDPGSSSAPRGRTPEAEARDILNIAARAGLSVLDASGLFGR------AETVLGQLIPR-----PV 70 (292)
T ss_pred CCcceeeeeeeeccCCCcccccCCCCCCCHHHHHHHHHHHHHcCCCEEecchhhhh------HHHHHhhhhcc-----CC
Confidence 46799999999999853 1111 23578899999999999999999999999987 99999999975 13
Q ss_pred CCcEEEEeeccCCCCCCChHHHHHHHHHHHhhhCCCcEEEEEeccCCCCCCChhHHHHHHHHHHHHHcCcEeEEeecCCC
Q 017700 123 QNNIVIATKFAAYPWRLTPGQFVNACRASLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKGLVRAVGVSNYG 202 (367)
Q Consensus 123 R~~v~i~tK~~~~~~~~~~~~i~~~l~~sL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvS~~~ 202 (367)
+++++|+||.. ..+++.+++++++||++||+||||+|++|||++...+. ..++|++|++|+++||||+||||||+
T Consensus 71 ~~~~~i~tk~~----~~~~~~i~~~~e~SL~rLg~d~iDl~~lH~~~~~~~~~-~~~~~~~l~~l~~~Gkir~iGvSn~~ 145 (292)
T PRK14863 71 PFRVTLSTVRA----DRGPDFVEAEARASLRRMGVERADAILVHSPTELFGPH-GAALWERLQALKDQGLFAKIGVSAHA 145 (292)
T ss_pred ceEeecccccc----cccHHHHHHHHHHHHHHhCCCccCeEEEeCchhhcCcc-hHHHHHHHHHHHHcCCcceEeeeccC
Confidence 56789999853 23689999999999999999999999999985422232 24589999999999999999999999
Q ss_pred hHHHHHHHHHHHhcCCCceeEEeeecccccccchhhHHHHHHHcCCeEEEecCCCCccccCCCCCCCCCCChhhhhhhhh
Q 017700 203 PNQLVKIHDYLTARGVPLCSAQVQFSLLSMGENQLEIKNICDSLGIRLISYSPLGLGMLTGKYTPSKLPRGPRALLFRQI 282 (367)
Q Consensus 203 ~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~v~a~~pl~~G~L~~~~~~~~~~~~~~~~~~~~~ 282 (367)
++++..+... .+++++|++||++++..+..+++++|+++||++++|+||++|+|++... ..+. .+
T Consensus 146 ~~~~~~~~~~-----~~~~~~Q~~~n~l~~~~~~~~~l~~~~~~gi~v~a~spl~~G~L~~~~~--~~~~-----~~--- 210 (292)
T PRK14863 146 SDDPVGVARR-----FKPDILQAPASLLDQRLLADGSLQRIAGMGVEVHLRSIFLNGLLFLPPD--RVPA-----QL--- 210 (292)
T ss_pred HHHHHHHHhc-----CCCCEEEecCCcccccccccchHHHHHhCCCEEEEechhhCccccCCcc--cCcc-----ch---
Confidence 9888765432 6899999999999987653379999999999999999999999975211 1110 11
Q ss_pred ccChHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCC--eeecCCCCHHHHHHHHhccCCCCCHHHHHHHHH
Q 017700 283 LPGLKPLLRSLKEIAERRGKTIPQVAINWCICKGT--IPIPGVKSVKQVEENLGALGWRLSSDELLELEY 350 (367)
Q Consensus 283 ~~~~~~~~~~l~~la~~~g~t~~qlal~~~l~~~~--~vi~g~~~~e~l~enl~a~~~~L~~e~~~~l~~ 350 (367)
......+..+.+++.+.++|++|+||+|+++++. ++|+|+++++||++|+++.+.+++++.+++|..
T Consensus 211 -~~~~~~~~~~~~~~~~~~~s~aqlalaw~l~~p~v~~~I~G~~~~~ql~~n~~a~~~~~~~~~~~~l~~ 279 (292)
T PRK14863 211 -KGASGRLSRVRRMIAEGRSDPLQAALGFALSRPEGSAVLVGVNSAAELSAVVAAASSPPPDLDWDDMAI 279 (292)
T ss_pred -hhhhHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCeEEEecCCHHHHHHHHHHHhcCCCccchhhccC
Confidence 1122445677888888999999999999999986 789999999999999999998999988877653
No 16
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=100.00 E-value=7.2e-47 Score=348.91 Aligned_cols=276 Identities=23% Similarity=0.301 Sum_probs=237.6
Q ss_pred cceeecC--CcccCcceecccccCCCCcCCCCCCCHHHHHHHHHHHHHCCCCEEeCCCCcCCCCCCChHHHHHHHHHhhC
Q 017700 39 WEKVKMG--PLSASPMGFGTWAWGNQFLWGYQESMDSQLQQTFNLAVENGINLFDTADSYGTGRLNGKSEKLLGKFISEI 116 (367)
Q Consensus 39 m~~~~lg--g~~vs~lglGt~~~g~~~~~g~~~~~~~~a~~~l~~A~~~Gi~~~DTA~~Yg~~~~~g~sE~~lG~al~~~ 116 (367)
|.||++| |.++|.||||||++.-. |+ ..++.+.+.++|++|+++||||||||..|.. |.||..+|+||.+
T Consensus 1 Mlyr~~~k~g~~~s~lgfG~MRlp~~--~~-~~id~~~~~~~i~~aie~GiNyidTA~~Yh~----g~sE~~lgkaL~~- 72 (391)
T COG1453 1 MLYRKFPKTGDELSILGFGCMRLPLK--EQ-GSIDEENANETIDYAIEHGINYIDTAWPYHG----GESEEFLGKALKD- 72 (391)
T ss_pred CchhhcCCCCcccceeccceeecccc--cC-CCccHHHHHHHHHHHHHcCCceEeecccccC----CCchHHHHHHhhh-
Confidence 7899999 99999999999998744 44 6678889999999999999999999999977 7799999999998
Q ss_pred CCCCCCCCcEEEEeeccCCCCCCChHHHHHHHHHHHhhhCCCcEEEEEeccCCCC-CCChhHHHHHHHHHHHHHcCcEeE
Q 017700 117 PGQKQVQNNIVIATKFAAYPWRLTPGQFVNACRASLARLQIEQIGIGQLHWSTAN-YAPPQELALWNGLVAMYEKGLVRA 195 (367)
Q Consensus 117 ~~~~~~R~~v~i~tK~~~~~~~~~~~~i~~~l~~sL~~Lg~d~iDl~~lH~~~~~-~~~~~~~~~~~~L~~l~~~G~ir~ 195 (367)
..|++|+|+||+...+-. +.+++++-++++|++||+||+|+|+||..+.. +......+.+++++++|++|+||+
T Consensus 73 ----~~Rekv~LaTKlp~~~~~-~~edm~r~fneqLekl~~Dy~D~yliH~l~~e~~~k~~~~g~~df~~kak~eGkIr~ 147 (391)
T COG1453 73 ----GYREKVKLATKLPSWPVK-DREDMERIFNEQLEKLGTDYIDYYLIHGLNTETWEKIERLGVFDFLEKAKAEGKIRN 147 (391)
T ss_pred ----cccceEEEEeecCCcccc-CHHHHHHHHHHHHHHhCCchhhhhhhccccHHHHHHHHccChHHHHHHHHhcCcEEE
Confidence 379999999999754322 78999999999999999999999999987432 222234458999999999999999
Q ss_pred EeecCCChH-HHHHHHHHHHhcCCCceeEEeeecccccccch-hhHHHHHHHcCCeEEEecCCCCccccCCCCCCCCCCC
Q 017700 196 VGVSNYGPN-QLVKIHDYLTARGVPLCSAQVQFSLLSMGENQ-LEIKNICDSLGIRLISYSPLGLGMLTGKYTPSKLPRG 273 (367)
Q Consensus 196 iGvS~~~~~-~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~-~~l~~~~~~~gi~v~a~~pl~~G~L~~~~~~~~~~~~ 273 (367)
+|+|.|+.. .+.+++.. .+++++|++||.++..... .+.+++|.++|++|+.++|+.+|-|... .|
T Consensus 148 ~GFSfHgs~e~~~~iv~a-----~~~dfvqlq~ny~d~~n~~~~~~l~~A~~~~~gI~IMeP~~gG~l~~~-----vP-- 215 (391)
T COG1453 148 AGFSFHGSTEVFKEIVDA-----YPWDFVQLQYNYIDQKNQAGTEGLKYAASKGLGIFIMEPLDGGGLLYN-----VP-- 215 (391)
T ss_pred eeecCCCCHHHHHHHHhc-----CCcceEEeeeeeeccchhcccHHHHHHHhCCCcEEEEeeCCCCCcccC-----CC--
Confidence 999999754 46777776 7899999999999865441 2689999999999999999999987753 12
Q ss_pred hhhhhhhhhccChHHHHHHHHHHHHHhC--CCHHHHHHHHHHcCCC--eeecCCCCHHHHHHHHhccCC---CCCHHHHH
Q 017700 274 PRALLFRQILPGLKPLLRSLKEIAERRG--KTIPQVAINWCICKGT--IPIPGVKSVKQVEENLGALGW---RLSSDELL 346 (367)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~l~~la~~~g--~t~~qlal~~~l~~~~--~vi~g~~~~e~l~enl~a~~~---~L~~e~~~ 346 (367)
+++.+|++++. .||+.+|+||+++++. ++++|+++++||+||++.++. +||++|+.
T Consensus 216 -----------------~~~~~l~~~~~~~~sP~~wa~R~~~shp~V~~vlsGm~~~~~l~enLk~~~~~~p~lte~e~~ 278 (391)
T COG1453 216 -----------------EKLEELCRPASPKRSPAEWALRYLLSHPEVTTVLSGMNTPEQLEENLKIASELEPSLTEEELQ 278 (391)
T ss_pred -----------------HHHHHHHHhcCCCCCcHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHHHhhcCCccCHHHHH
Confidence 68899999875 7899999999999998 799999999999999998864 39999999
Q ss_pred HHHHHHhhCC
Q 017700 347 ELEYAALESP 356 (367)
Q Consensus 347 ~l~~~~~~~~ 356 (367)
.|.++.+...
T Consensus 279 il~~v~~~~~ 288 (391)
T COG1453 279 ILEKVEEIYR 288 (391)
T ss_pred HHHHHHHHHH
Confidence 9999887643
No 17
>KOG1576 consensus Predicted oxidoreductase [Energy production and conversion]
Probab=100.00 E-value=3e-45 Score=323.44 Aligned_cols=280 Identities=24% Similarity=0.291 Sum_probs=230.7
Q ss_pred CCCcceeecC--CcccCcceecccccCCCCcCCCCCCCHHHHHHHHHHHHHCCCCEEeCCCCcCCCCCCChHHHHHHHHH
Q 017700 36 FWPWEKVKMG--PLSASPMGFGTWAWGNQFLWGYQESMDSQLQQTFNLAVENGINLFDTADSYGTGRLNGKSEKLLGKFI 113 (367)
Q Consensus 36 ~~~m~~~~lg--g~~vs~lglGt~~~g~~~~~g~~~~~~~~a~~~l~~A~~~Gi~~~DTA~~Yg~~~~~g~sE~~lG~al 113 (367)
.+.|+||.+| |++||+||||...+++. + .+.+.++....+..|+.+|||+|||++.||. +.+|+.+|.++
T Consensus 19 vrrmeyR~lg~tgl~VSk~~fGga~L~~~--f--gd~~~e~~i~tv~eA~k~GINyiDTsp~Ygq----s~se~~lg~al 90 (342)
T KOG1576|consen 19 VRRMEYRQLGSTGLRVSKLGFGGAALGQL--F--GDEDEEEGILTVIEAFKSGINYIDTSPYYGQ----SRSEEGLGLAL 90 (342)
T ss_pred HHHHHHhhcCCCcceeeeeeecchhhhhh--c--CCcchhhhHHHHHHHHHccccceecCcccCc----chhHHHHHHHH
Confidence 3459999999 99999999999999876 3 3356788888888899999999999999999 99999999999
Q ss_pred hhCCCCCCCCCcEEEEeeccCCC------CCCChHHHHHHHHHHHhhhCCCcEEEEEeccCCCC-CCChhHHHHHHHHHH
Q 017700 114 SEIPGQKQVQNNIVIATKFAAYP------WRLTPGQFVNACRASLARLQIEQIGIGQLHWSTAN-YAPPQELALWNGLVA 186 (367)
Q Consensus 114 ~~~~~~~~~R~~v~i~tK~~~~~------~~~~~~~i~~~l~~sL~~Lg~d~iDl~~lH~~~~~-~~~~~~~~~~~~L~~ 186 (367)
++ ++|+.+||+||+|... ++++.+.+++++++||+||++||+|++++|..+.. .......|++.+|++
T Consensus 91 ~~-----vPR~aYyIaTKvgRy~ld~~~~FdfsadkvreSv~rSlerLqldyvDilqiHDvefap~ld~vl~Etlp~Le~ 165 (342)
T KOG1576|consen 91 KD-----VPREAYYIATKVGRYELDYANMFDFSADKVRESVKRSLERLQLDYVDILQIHDVEFAPNLDIVLNETLPALEE 165 (342)
T ss_pred hh-----CChhheeeeeeeeecccCccccccchHHHHHHHHHHHHHHhCCceeEEEEeecccccccccHHHHHHHHHHHH
Confidence 99 6899999999999752 56799999999999999999999999999976432 122345578999999
Q ss_pred HHHcCcEeEEeecCCChHHHHHHHHHHHhcCCCceeEE--eeecccccccchhhHHHHHHHcCCeEEEecCCCCccccCC
Q 017700 187 MYEKGLVRAVGVSNYGPNQLVKIHDYLTARGVPLCSAQ--VQFSLLSMGENQLEIKNICDSLGIRLISYSPLGLGMLTGK 264 (367)
Q Consensus 187 l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q--~~~n~~~~~~~~~~l~~~~~~~gi~v~a~~pl~~G~L~~~ 264 (367)
||++||||+|||+.+..+.+.++.+. ....++++- .+|++.+.... ..++..+.+|++|+.-++++.|+|+..
T Consensus 166 lk~~Gk~RfiGitgypldvl~~~ae~---~~G~~dvvlsY~ry~l~d~tLl--~~~~~~~sk~vgVi~AsalsmgLLt~~ 240 (342)
T KOG1576|consen 166 LKQEGKIRFIGITGYPLDVLTECAER---GKGRLDVVLSYCRYTLNDNTLL--RYLKRLKSKGVGVINASALSMGLLTNQ 240 (342)
T ss_pred HHhcCceeEeeecccchHHHHHHHhc---CCCceeeehhhhhhccccHHHH--HHHHHHHhcCceEEehhhHHHHHhhcC
Confidence 99999999999999999988877753 112344443 67777654333 678888999999999999999999975
Q ss_pred CCCCCCCCChhhhhhhhhccChHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCC--eeecCCCCHHHHHHHHhccCCCCCH
Q 017700 265 YTPSKLPRGPRALLFRQILPGLKPLLRSLKEIAERRGKTIPQVAINWCICKGT--IPIPGVKSVKQVEENLGALGWRLSS 342 (367)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~g~t~~qlal~~~l~~~~--~vi~g~~~~e~l~enl~a~~~~L~~ 342 (367)
-.+..+|.+ ++..+...+..++|++.|+..+.+|+.|.++.+. ++++|+++.++|+.|+++-...|+.
T Consensus 241 gp~~wHPaS----------~Elk~~a~~aa~~Cq~rnv~l~kLA~~Yam~~~~~~~~lvGm~s~~~l~~nLdan~~~ls~ 310 (342)
T KOG1576|consen 241 GPPPWHPAS----------DELKEAAKAAAEYCQSRNVELGKLAMYYAMSLPGVSTVLVGMSSRQLLRINLDANFDRLSS 310 (342)
T ss_pred CCCCCCCCC----------HHHHHHHHHHHHHHHHcCccHHHHHHHHHHccCCcceEEecCchHHHHHHHHHhhhccccc
Confidence 333333322 2334445678889999999999999999999887 8999999999999999976667776
Q ss_pred H
Q 017700 343 D 343 (367)
Q Consensus 343 e 343 (367)
.
T Consensus 311 ~ 311 (342)
T KOG1576|consen 311 K 311 (342)
T ss_pred h
Confidence 3
No 18
>KOG3023 consensus Glutamate-cysteine ligase regulatory subunit [Amino acid transport and metabolism]
Probab=97.96 E-value=2.1e-05 Score=69.89 Aligned_cols=72 Identities=25% Similarity=0.377 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHcCcEeEEeecCCChHHHHHHHHHHHhcCCCceeEEeeecccccccchhhHHHHHHHcCCeEEEec
Q 017700 178 LALWNGLVAMYEKGLVRAVGVSNYGPNQLVKIHDYLTARGVPLCSAQVQFSLLSMGENQLEIKNICDSLGIRLISYS 254 (367)
Q Consensus 178 ~~~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~v~a~~ 254 (367)
..+|+.||+++.+|+|..||||.+++.++++++..+. +.|..+|++..-++.-+. ++.++|..++|.+..++
T Consensus 156 kplwk~LE~lv~~~kI~~lGvSDfda~qLe~Li~saq---VvP~snqVnL~~cCvvPp--dLqafa~~hdiQLltHs 227 (285)
T KOG3023|consen 156 KPLWKLLEELVGEGKIGTLGVSDFDANQLERLISSAQ---VVPESNQVNLGQCCVVPP--DLQAFADRHDIQLLTHS 227 (285)
T ss_pred HHHHHHHHHHhccCceeeeeecccCHHHHHHHHhhhc---cccccceeeccccccCCH--HHHHHhhhcceeeeecC
Confidence 4689999999999999999999999999999999865 789999999988876665 79999999999998874
No 19
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=88.54 E-value=16 Score=32.04 Aligned_cols=153 Identities=16% Similarity=0.171 Sum_probs=99.3
Q ss_pred HHHHHHHHCCCCEEeCCCCcCCCCCCChHHHHHHHHHhhCCCCCCCCCcEEEEeeccCCCCCCChHHHHHH---------
Q 017700 77 QTFNLAVENGINLFDTADSYGTGRLNGKSEKLLGKFISEIPGQKQVQNNIVIATKFAAYPWRLTPGQFVNA--------- 147 (367)
Q Consensus 77 ~~l~~A~~~Gi~~~DTA~~Yg~~~~~g~sE~~lG~al~~~~~~~~~R~~v~i~tK~~~~~~~~~~~~i~~~--------- 147 (367)
++|..-++-|-+.+|-..-.|. +-+.|+.. + ++.. .|. +.+.+.+.++
T Consensus 5 ~~I~~~I~pgsrVLDLGCGdG~----------LL~~L~~~------k-~v~g---~Gv---Eid~~~v~~cv~rGv~Viq 61 (193)
T PF07021_consen 5 QIIAEWIEPGSRVLDLGCGDGE----------LLAYLKDE------K-QVDG---YGV---EIDPDNVAACVARGVSVIQ 61 (193)
T ss_pred HHHHHHcCCCCEEEecCCCchH----------HHHHHHHh------c-CCeE---EEE---ecCHHHHHHHHHcCCCEEE
Confidence 5677778889999998776653 45666551 1 1111 111 2245555555
Q ss_pred --HHHHHhhhCCCcEEEEEeccCCCCCCChhHHHHHHHHHHHHHcCcEeEEeecCCChHHHHHHHHHHHhcCCCceeEEe
Q 017700 148 --CRASLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKGLVRAVGVSNYGPNQLVKIHDYLTARGVPLCSAQV 225 (367)
Q Consensus 148 --l~~sL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~ 225 (367)
+++-|....-+.+|.+.|..- ... .......|+++..-|+--=+++.||.-+..+.-+-. .|-.|..-++
T Consensus 62 ~Dld~gL~~f~d~sFD~VIlsqt---LQ~--~~~P~~vL~EmlRVgr~~IVsFPNFg~W~~R~~l~~---~GrmPvt~~l 133 (193)
T PF07021_consen 62 GDLDEGLADFPDQSFDYVILSQT---LQA--VRRPDEVLEEMLRVGRRAIVSFPNFGHWRNRLQLLL---RGRMPVTKAL 133 (193)
T ss_pred CCHHHhHhhCCCCCccEEehHhH---HHh--HhHHHHHHHHHHHhcCeEEEEecChHHHHHHHHHHh---cCCCCCCCCC
Confidence 445556666667777766632 011 122346688888889888899999998886654432 3445677788
Q ss_pred eecccccccc----hhhHHHHHHHcCCeEEEecCCCCcc
Q 017700 226 QFSLLSMGEN----QLEIKNICDSLGIRLISYSPLGLGM 260 (367)
Q Consensus 226 ~~n~~~~~~~----~~~l~~~~~~~gi~v~a~~pl~~G~ 260 (367)
+|+-++...- -.++-++|++.|+.|+-..++..+.
T Consensus 134 Py~WYdTPNih~~Ti~DFe~lc~~~~i~I~~~~~~~~~~ 172 (193)
T PF07021_consen 134 PYEWYDTPNIHLCTIKDFEDLCRELGIRIEERVFLDGGR 172 (193)
T ss_pred CCcccCCCCcccccHHHHHHHHHHCCCEEEEEEEEcCCC
Confidence 8887765432 1578999999999999998887764
No 20
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=88.52 E-value=21 Score=33.78 Aligned_cols=157 Identities=13% Similarity=0.119 Sum_probs=88.9
Q ss_pred CHHHHHHHHHHHHHCCCCEEeCCCCcCCCCCCChHHHHHHHHHhhCCCCCCCCCcEEEEeeccCCCCCCChHHHHHHHHH
Q 017700 71 MDSQLQQTFNLAVENGINLFDTADSYGTGRLNGKSEKLLGKFISEIPGQKQVQNNIVIATKFAAYPWRLTPGQFVNACRA 150 (367)
Q Consensus 71 ~~~~a~~~l~~A~~~Gi~~~DTA~~Yg~~~~~g~sE~~lG~al~~~~~~~~~R~~v~i~tK~~~~~~~~~~~~i~~~l~~ 150 (367)
+.++..+.++.+++.|++.|+.-- |... ....+.+. ++++. .. ++-|.-+.-. ..+.+.. ..+-+
T Consensus 134 ~~~~~~~~~~~~~~~Gf~~iKik~--g~~~--~~d~~~v~-~lr~~-----~g-~~~l~vD~n~---~~~~~~A-~~~~~ 198 (316)
T cd03319 134 TPEAMAAAAKKAAKRGFPLLKIKL--GGDL--EDDIERIR-AIREA-----AP-DARLRVDANQ---GWTPEEA-VELLR 198 (316)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEe--CCCh--hhHHHHHH-HHHHh-----CC-CCeEEEeCCC---CcCHHHH-HHHHH
Confidence 456777888889999999998642 3200 01122232 33331 12 4556656521 2244443 23334
Q ss_pred HHhhhCCCcEEEEEeccCCCCCCChhHHHHHHHHHHHHHcCcEe-EEeecCCChHHHHHHHHHHHhcCCCceeEEeeecc
Q 017700 151 SLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKGLVR-AVGVSNYGPNQLVKIHDYLTARGVPLCSAQVQFSL 229 (367)
Q Consensus 151 sL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~~~~L~~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~ 229 (367)
.|+.++++++ -.|-. + . -++.+.+|++...|. ..|=+-++.+.+..+++. ...+++|+..+.
T Consensus 199 ~l~~~~l~~i-----EeP~~---~-~---d~~~~~~L~~~~~ipIa~~E~~~~~~~~~~~~~~-----~~~d~v~~~~~~ 261 (316)
T cd03319 199 ELAELGVELI-----EQPVP---A-G---DDDGLAYLRDKSPLPIMADESCFSAADAARLAGG-----GAYDGINIKLMK 261 (316)
T ss_pred HHHhcCCCEE-----ECCCC---C-C---CHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHhc-----CCCCEEEEeccc
Confidence 5555554443 33321 1 1 256778888877665 334455666777666654 456778887665
Q ss_pred cccccchhhHHHHHHHcCCeEEEecCCCCc
Q 017700 230 LSMGENQLEIKNICDSLGIRLISYSPLGLG 259 (367)
Q Consensus 230 ~~~~~~~~~l~~~~~~~gi~v~a~~pl~~G 259 (367)
+---..-.++..+|+++|+.++..+-+..+
T Consensus 262 ~GGi~~~~~~~~~a~~~gi~~~~~~~~~~~ 291 (316)
T cd03319 262 TGGLTEALRIADLARAAGLKVMVGCMVESS 291 (316)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEECchhhH
Confidence 421112237899999999999987655443
No 21
>PRK13796 GTPase YqeH; Provisional
Probab=84.32 E-value=21 Score=34.73 Aligned_cols=139 Identities=16% Similarity=0.114 Sum_probs=87.7
Q ss_pred cceecccccCCCCcCCCCCCCHHHHHHHHHHHHHCC---CCEEeCCCCcCCCCCCChHHHHHHHHHhhCCCCCCCCCcEE
Q 017700 51 PMGFGTWAWGNQFLWGYQESMDSQLQQTFNLAVENG---INLFDTADSYGTGRLNGKSEKLLGKFISEIPGQKQVQNNIV 127 (367)
Q Consensus 51 ~lglGt~~~g~~~~~g~~~~~~~~a~~~l~~A~~~G---i~~~DTA~~Yg~~~~~g~sE~~lG~al~~~~~~~~~R~~v~ 127 (367)
.+|-=|.++-..........++++..++++..-+.- +-.+|..+.-+. -...+.+... .+.-++
T Consensus 35 ~~C~RC~~l~hy~~~~~~~~~~~~~~~~l~~i~~~~~lIv~VVD~~D~~~s------~~~~L~~~~~-------~kpviL 101 (365)
T PRK13796 35 VYCQRCFRLKHYNEIQDVSLTDDDFLKLLNGIGDSDALVVNVVDIFDFNGS------WIPGLHRFVG-------NNPVLL 101 (365)
T ss_pred eEchhhhhhhccCcccCCCCCHHHHHHHHHhhcccCcEEEEEEECccCCCc------hhHHHHHHhC-------CCCEEE
Confidence 456566655433222234567788888888887655 456786665443 2333444332 345688
Q ss_pred EEeeccCCCCCCChHHHHHHHHHHHhhhCCCcEEEEEeccCCCCCCChhHHHHHHHHHHHHHcCcEeEEeecCCChHHH
Q 017700 128 IATKFAAYPWRLTPGQFVNACRASLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKGLVRAVGVSNYGPNQL 206 (367)
Q Consensus 128 i~tK~~~~~~~~~~~~i~~~l~~sL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~l 206 (367)
|.+|.--.+.....+.+.+.++...+.+|....|++++-.- ......++++.+.++.+.+.+--+|.+|.+-..+
T Consensus 102 ViNK~DLl~~~~~~~~i~~~l~~~~k~~g~~~~~v~~vSAk----~g~gI~eL~~~I~~~~~~~~v~vvG~~NvGKSTL 176 (365)
T PRK13796 102 VGNKADLLPKSVKKNKVKNWLRQEAKELGLRPVDVVLISAQ----KGHGIDELLEAIEKYREGRDVYVVGVTNVGKSTL 176 (365)
T ss_pred EEEchhhCCCccCHHHHHHHHHHHHHhcCCCcCcEEEEECC----CCCCHHHHHHHHHHhcCCCeEEEEcCCCCcHHHH
Confidence 99998433222245566666677777778655577776632 2223456788888887788899999999998775
No 22
>PRK07945 hypothetical protein; Provisional
Probab=82.60 E-value=47 Score=31.90 Aligned_cols=162 Identities=12% Similarity=0.076 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHHCCCCEEeCCCCcCCCC-CCChHHHHHHHHHhhCCC-CCCCCCcEEEEeec--cCCCCCCChHHHHHHH
Q 017700 73 SQLQQTFNLAVENGINLFDTADSYGTGR-LNGKSEKLLGKFISEIPG-QKQVQNNIVIATKF--AAYPWRLTPGQFVNAC 148 (367)
Q Consensus 73 ~~a~~~l~~A~~~Gi~~~DTA~~Yg~~~-~~g~sE~~lG~al~~~~~-~~~~R~~v~i~tK~--~~~~~~~~~~~i~~~l 148 (367)
....++++.|.+.|+..+=.+++..... ..+.+...+-+.+....+ .....+ +-|-.-+ +..+ +.+.+..
T Consensus 111 ~~~ee~v~~Ai~~Gl~~i~~TDH~p~~~~~~~~~~~~l~~y~~~i~~l~~ky~~-I~Il~GiE~d~~~-~g~~~~~---- 184 (335)
T PRK07945 111 SPIEEMARTAAALGHEYCALTDHSPRLTVANGLSAERLRKQLDVVAELNEELAP-FRILTGIEVDILD-DGSLDQE---- 184 (335)
T ss_pred CCHHHHHHHHHHCCCCEEEEeCCCCCccCCCCCCHHHHHHHHHHHHHHHHhcCC-ceEEEEeEecccC-CCCcchh----
Confidence 3477899999999999987776643210 112222222222222100 000122 3332222 2111 1122222
Q ss_pred HHHHhhhCCCcEEEEEeccCCCCCCChhHHHHHHHHHHHHHcCcEeEEeec------C------CChHHHHHHHHHHHhc
Q 017700 149 RASLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKGLVRAVGVS------N------YGPNQLVKIHDYLTAR 216 (367)
Q Consensus 149 ~~sL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvS------~------~~~~~l~~~~~~~~~~ 216 (367)
++.|+. .||+ +..+|+.... ...+..+.+.++.+.+.+.-||=- + .....++++.+.+...
T Consensus 185 ~~~l~~--~D~v-IgSvH~~~~~----~~~~~~~~l~~ai~~~~~dvlgH~D~~~~~~~~~~~~~~~~~~~~i~~a~~e~ 257 (335)
T PRK07945 185 PELLDR--LDVV-VASVHSKLRM----DAAAMTRRMLAAVANPHTDVLGHCTGRLVTGNRGTRPESKFDAEAVFAACREH 257 (335)
T ss_pred HHHHHh--CCEE-EEEeecCCCC----CHHHHHHHHHHHhcCCCCeEEecCchhhhccccCCCChhhcCHHHHHHHHHHh
Confidence 333333 5777 7889976321 123456788888888887777721 1 0111246677777777
Q ss_pred CCCceeEEeeecccccccchhhHHHHHHHcCCeEE
Q 017700 217 GVPLCSAQVQFSLLSMGENQLEIKNICDSLGIRLI 251 (367)
Q Consensus 217 ~~~~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~v~ 251 (367)
+..+.+|- +.+...+.. .+++.|++.|+.++
T Consensus 258 g~~lEINt---~~~r~~P~~-~il~~a~e~G~~vt 288 (335)
T PRK07945 258 GTAVEINS---RPERRDPPT-RLLRLALDAGCLFS 288 (335)
T ss_pred CCEEEEeC---CCCCCCChH-HHHHHHHHcCCeEE
Confidence 76666663 333233333 79999999998864
No 23
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=81.96 E-value=49 Score=31.59 Aligned_cols=134 Identities=15% Similarity=0.230 Sum_probs=77.1
Q ss_pred CCCCHHHHHHHHHHHHHCCCCEEeCCCCcCCCC-CCChHHHHHHHHHhhCCCCCCCCCcEEEEeeccCCCCCCChHHHHH
Q 017700 68 QESMDSQLQQTFNLAVENGINLFDTADSYGTGR-LNGKSEKLLGKFISEIPGQKQVQNNIVIATKFAAYPWRLTPGQFVN 146 (367)
Q Consensus 68 ~~~~~~~a~~~l~~A~~~Gi~~~DTA~~Yg~~~-~~g~sE~~lG~al~~~~~~~~~R~~v~i~tK~~~~~~~~~~~~i~~ 146 (367)
...+.++..++++.+.+.|+..|--. |.-| ..-+-++++..+ ++.+ ...++.|+|-.. .+.+
T Consensus 43 ~~ls~eei~~li~~~~~~Gv~~I~~t---GGEPllr~dl~~li~~i-~~~~----~l~~i~itTNG~---------ll~~ 105 (329)
T PRK13361 43 QVLSLEELAWLAQAFTELGVRKIRLT---GGEPLVRRGCDQLVARL-GKLP----GLEELSLTTNGS---------RLAR 105 (329)
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEE---CcCCCccccHHHHHHHH-HhCC----CCceEEEEeChh---------HHHH
Confidence 45778899999999999999888643 3211 222233334332 2211 122566666631 1222
Q ss_pred HHHHHHhhhCCCcEEEEEeccCCCC-CC----ChhHHHHHHHHHHHHHcCc----EeEEeecCCChHHHHHHHHHHHhcC
Q 017700 147 ACRASLARLQIEQIGIGQLHWSTAN-YA----PPQELALWNGLVAMYEKGL----VRAVGVSNYGPNQLVKIHDYLTARG 217 (367)
Q Consensus 147 ~l~~sL~~Lg~d~iDl~~lH~~~~~-~~----~~~~~~~~~~L~~l~~~G~----ir~iGvS~~~~~~l~~~~~~~~~~~ 217 (367)
.-+.|...|++++. +-|+..++. +. ....+.+++.++.+++.|. |..+.+...+.+++..+++.+...+
T Consensus 106 -~~~~L~~aGl~~v~-ISlDs~~~e~~~~i~~~g~~~~vl~~i~~~~~~Gi~~v~in~v~~~g~N~~ei~~~~~~~~~~g 183 (329)
T PRK13361 106 -FAAELADAGLKRLN-ISLDTLRPELFAALTRNGRLERVIAGIDAAKAAGFERIKLNAVILRGQNDDEVLDLVEFCRERG 183 (329)
T ss_pred -HHHHHHHcCCCeEE-EEeccCCHHHhhhhcCCCCHHHHHHHHHHHHHcCCCceEEEEEEECCCCHHHHHHHHHHHHhcC
Confidence 34556777888776 455544321 11 1124557888888888775 3344445566777778888777666
Q ss_pred CCc
Q 017700 218 VPL 220 (367)
Q Consensus 218 ~~~ 220 (367)
+.+
T Consensus 184 i~~ 186 (329)
T PRK13361 184 LDI 186 (329)
T ss_pred CeE
Confidence 543
No 24
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=80.80 E-value=22 Score=32.73 Aligned_cols=105 Identities=11% Similarity=0.053 Sum_probs=69.7
Q ss_pred HHHHHHHHcCcEeEEeecC-CChHHHHHHHHHHHhcCCCceeEEeeecccccccchhhHHHHHHHcCCeEEEecCCCCcc
Q 017700 182 NGLVAMYEKGLVRAVGVSN-YGPNQLVKIHDYLTARGVPLCSAQVQFSLLSMGENQLEIKNICDSLGIRLISYSPLGLGM 260 (367)
Q Consensus 182 ~~L~~l~~~G~ir~iGvS~-~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~v~a~~pl~~G~ 260 (367)
..|.+..++|+. -+|+-. .....+-++. ...|+++.++-.+..+++...-. .++..|+..|+..++.-|-..
T Consensus 8 n~lk~~l~~g~~-~~g~~~~~~sp~~~e~~---a~~G~D~v~iD~EHg~~~~~~~~-~~i~a~~~~g~~~lVRvp~~~-- 80 (256)
T PRK10558 8 NKFKAALAAKQV-QIGCWSALANPITTEVL---GLAGFDWLVLDGEHAPNDVSTFI-PQLMALKGSASAPVVRVPTNE-- 80 (256)
T ss_pred HHHHHHHHcCCc-eEEEEEcCCCcHHHHHH---HhcCCCEEEEccccCCCCHHHHH-HHHHHHhhcCCCcEEECCCCC--
Confidence 345555555774 455422 2222333333 33568899999999999876655 788899999998888765542
Q ss_pred ccCCCCCCCCCCChhhhhhhhhccChHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCC--eeecCCCCHHHHHHHHhccCC
Q 017700 261 LTGKYTPSKLPRGPRALLFRQILPGLKPLLRSLKEIAERRGKTIPQVAINWCICKGT--IPIPGVKSVKQVEENLGALGW 338 (367)
Q Consensus 261 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~g~t~~qlal~~~l~~~~--~vi~g~~~~e~l~enl~a~~~ 338 (367)
...++.+|..|. +++|-.++.||+++.+++..+
T Consensus 81 ---------------------------------------------~~~i~r~LD~Ga~giivP~v~tae~a~~~v~a~ky 115 (256)
T PRK10558 81 ---------------------------------------------PVIIKRLLDIGFYNFLIPFVETAEEARRAVASTRY 115 (256)
T ss_pred ---------------------------------------------HHHHHHHhCCCCCeeeecCcCCHHHHHHHHHHcCC
Confidence 234566677776 778888888888888777665
No 25
>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]
Probab=80.75 E-value=59 Score=31.78 Aligned_cols=57 Identities=11% Similarity=0.194 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHCCCCEEeCCCCcCCCCCCChHHHHHHHHHhhCCCCCCCCCcEEEEeecc
Q 017700 72 DSQLQQTFNLAVENGINLFDTADSYGTGRLNGKSEKLLGKFISEIPGQKQVQNNIVIATKFA 133 (367)
Q Consensus 72 ~~~a~~~l~~A~~~Gi~~~DTA~~Yg~~~~~g~sE~~lG~al~~~~~~~~~R~~v~i~tK~~ 133 (367)
..++.+.+..|+++|- ...|+..-..-.|-+.+.+.+.+-.+.....+|||+++-+.
T Consensus 80 s~~a~~Av~~al~Sgk-----~N~Yaps~G~~~AR~AVAeYl~~~l~~kl~a~DV~ltsGC~ 136 (447)
T KOG0259|consen 80 SQEAEQAVVDALRSGK-----GNGYAPSVGILPARRAVAEYLNRDLPNKLTADDVVLTSGCS 136 (447)
T ss_pred CHHHHHHHHHHHhcCC-----CCCcCCccccHHHHHHHHHHhhcCCCCccCcCceEEeccch
Confidence 4688888999999984 44676522123456667777654444456789999998763
No 26
>PRK08609 hypothetical protein; Provisional
Probab=80.17 E-value=43 Score=34.75 Aligned_cols=159 Identities=13% Similarity=0.167 Sum_probs=87.5
Q ss_pred HHHHHHHHHHCCCCEEeCCCCcCCCC-CCChHHHHHHHHH---hhCCCCCCCCC-cEEEEeeccCCCCCCChHHHHHHHH
Q 017700 75 LQQTFNLAVENGINLFDTADSYGTGR-LNGKSEKLLGKFI---SEIPGQKQVQN-NIVIATKFAAYPWRLTPGQFVNACR 149 (367)
Q Consensus 75 a~~~l~~A~~~Gi~~~DTA~~Yg~~~-~~g~sE~~lG~al---~~~~~~~~~R~-~v~i~tK~~~~~~~~~~~~i~~~l~ 149 (367)
..++++.|.+.|+.++=.++++...+ ..|.+...+-..+ +.+.+ ...+ +|++-.-+... ++....-.+
T Consensus 351 leemv~~A~~~Gl~~i~iTdH~~~~~~~~~~~~~~l~~~~~ei~~l~~--~~~~i~Il~GiEv~i~-----~~g~~d~~~ 423 (570)
T PRK08609 351 IEEMVEACIAKGYEYMAITDHSQYLKVANGLTEERLLEQAEEIKALNE--KYPEIDILSGIEMDIL-----PDGSLDYDD 423 (570)
T ss_pred HHHHHHHHHHCCCCEEEEeCCCCCccccCCCCHHHHHHHHHHHHHHHH--hcCCCeEEEEEEEeec-----CCcchhhcH
Confidence 55699999999999998888863211 1122333333222 22111 0111 23333332221 222222233
Q ss_pred HHHhhhCCCcEEEEEeccCCCCCCChhHHHHHHHHHHHHHcCcEeEEeecC------C--ChHHHHHHHHHHHhcCCCce
Q 017700 150 ASLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKGLVRAVGVSN------Y--GPNQLVKIHDYLTARGVPLC 221 (367)
Q Consensus 150 ~sL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvS~------~--~~~~l~~~~~~~~~~~~~~~ 221 (367)
..|+. .||+ +.-+|++-. .+ ..++++.+.++.+.|.+--||=-. + -...++++.+.+...|..
T Consensus 424 ~~L~~--~D~v-I~SvH~~~~--~~--~~~~~~~l~~a~~~~~~dILaHpd~rli~~~~~~~~d~~~i~~~a~~~G~~-- 494 (570)
T PRK08609 424 EVLAE--LDYV-IAAIHSSFS--QS--EEEIMKRLENACRNPYVRLIAHPTGRLIGRRDGYDVNIDQLIELAKETNTA-- 494 (570)
T ss_pred HHHHh--hCEE-EEEeecCCC--CC--HHHHHHHHHHHhcCCCceEEECCCccccccCCCchHHHHHHHHHHHHhCCE--
Confidence 34554 5777 788896521 22 344678888888888877665322 1 134567777777766644
Q ss_pred eEEeeecccccccchhhHHHHHHHcCCeEE
Q 017700 222 SAQVQFSLLSMGENQLEIKNICDSLGIRLI 251 (367)
Q Consensus 222 ~~q~~~n~~~~~~~~~~l~~~~~~~gi~v~ 251 (367)
+|++-+.+..... ..++..|.+.|+.+.
T Consensus 495 -lEINa~~~r~~~~-~~~~~~~~e~Gv~i~ 522 (570)
T PRK08609 495 -LELNANPNRLDLS-AEHLKKAQEAGVKLA 522 (570)
T ss_pred -EEEcCCccccCcc-HHHHHHHHHcCCEEE
Confidence 4444444432233 388999999999754
No 27
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=80.04 E-value=25 Score=32.09 Aligned_cols=139 Identities=18% Similarity=0.166 Sum_probs=70.8
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEeCCCCcCC---------CC-CCCh----HHHHHHHHHhhCCCCCCCCCcEEEEeeccC
Q 017700 69 ESMDSQLQQTFNLAVENGINLFDTADSYGT---------GR-LNGK----SEKLLGKFISEIPGQKQVQNNIVIATKFAA 134 (367)
Q Consensus 69 ~~~~~~a~~~l~~A~~~Gi~~~DTA~~Yg~---------~~-~~g~----sE~~lG~al~~~~~~~~~R~~v~i~tK~~~ 134 (367)
..+.++-.++.+++-+.||.+|=|.-.-.. +- --+. .-.+|-+ +.. ....++|+|-..
T Consensus 52 el~~e~~~~L~~~~~~~gi~f~stpfd~~s~d~l~~~~~~~~KIaS~dl~n~~lL~~-~A~------tgkPvIlSTG~s- 123 (241)
T PF03102_consen 52 ELSEEQHKELFEYCKELGIDFFSTPFDEESVDFLEELGVPAYKIASGDLTNLPLLEY-IAK------TGKPVILSTGMS- 123 (241)
T ss_dssp SS-HHHHHHHHHHHHHTT-EEEEEE-SHHHHHHHHHHT-SEEEE-GGGTT-HHHHHH-HHT------T-S-EEEE-TT--
T ss_pred cCCHHHHHHHHHHHHHcCCEEEECCCCHHHHHHHHHcCCCEEEeccccccCHHHHHH-HHH------hCCcEEEECCCC-
Confidence 467789999999999999998866533211 00 0000 0111111 112 234567777653
Q ss_pred CCCCCChHHHHHHHHHHHhhhCCCcEEEEEeccCCCCCCChhHHHHHHHHHHHHHcCcEeEEeecCCChHHHHHHHHHHH
Q 017700 135 YPWRLTPGQFVNACRASLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKGLVRAVGVSNYGPNQLVKIHDYLT 214 (367)
Q Consensus 135 ~~~~~~~~~i~~~l~~sL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~ 214 (367)
+.++|+++++-..++- .-|+.+||+......+.+. --+..+..|++.=- --||+|.|+.....-+...+
T Consensus 124 -----tl~EI~~Av~~~~~~~---~~~l~llHC~s~YP~~~e~-~NL~~i~~L~~~f~-~~vG~SDHt~g~~~~~~Ava- 192 (241)
T PF03102_consen 124 -----TLEEIERAVEVLREAG---NEDLVLLHCVSSYPTPPED-VNLRVIPTLKERFG-VPVGYSDHTDGIEAPIAAVA- 192 (241)
T ss_dssp ------HHHHHHHHHHHHHHC---T--EEEEEE-SSSS--GGG---TTHHHHHHHHST-SEEEEEE-SSSSHHHHHHHH-
T ss_pred -----CHHHHHHHHHHHHhcC---CCCEEEEecCCCCCCChHH-cChHHHHHHHHhcC-CCEEeCCCCCCcHHHHHHHH-
Confidence 6778888887764443 4689999998544344332 24677777775322 57899999886544443332
Q ss_pred hcCCCceeEEeeecc
Q 017700 215 ARGVPLCSAQVQFSL 229 (367)
Q Consensus 215 ~~~~~~~~~q~~~n~ 229 (367)
.--.+++-+|++
T Consensus 193 ---lGA~vIEKHfTl 204 (241)
T PF03102_consen 193 ---LGARVIEKHFTL 204 (241)
T ss_dssp ---TT-SEEEEEB-S
T ss_pred ---cCCeEEEEEEEC
Confidence 223456666654
No 28
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=78.53 E-value=20 Score=35.16 Aligned_cols=81 Identities=15% Similarity=0.051 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHCCCCEEeCCCCcCCCCCCChHHHHHHHHHhhCCCCCCCCCcEEEEeeccCCCCCCChHHHHHHHHHHH
Q 017700 73 SQLQQTFNLAVENGINLFDTADSYGTGRLNGKSEKLLGKFISEIPGQKQVQNNIVIATKFAAYPWRLTPGQFVNACRASL 152 (367)
Q Consensus 73 ~~a~~~l~~A~~~Gi~~~DTA~~Yg~~~~~g~sE~~lG~al~~~~~~~~~R~~v~i~tK~~~~~~~~~~~~i~~~l~~sL 152 (367)
-....+++.|++.|++++|||..+.. ...+.... .+..+.+..-+|-.| +++--.....+++-.
T Consensus 79 ~~~~~i~ka~i~~gv~yvDts~~~~~-------~~~~~~~a--------~~Agit~v~~~G~dP-Gi~nv~a~~a~~~~~ 142 (389)
T COG1748 79 FVDLTILKACIKTGVDYVDTSYYEEP-------PWKLDEEA--------KKAGITAVLGCGFDP-GITNVLAAYAAKELF 142 (389)
T ss_pred hhhHHHHHHHHHhCCCEEEcccCCch-------hhhhhHHH--------HHcCeEEEcccCcCc-chHHHHHHHHHHHhh
Confidence 45569999999999999999977653 23333332 234577777777543 334444444455444
Q ss_pred hhhCCCcEEEEEeccCCCC
Q 017700 153 ARLQIEQIGIGQLHWSTAN 171 (367)
Q Consensus 153 ~~Lg~d~iDl~~lH~~~~~ 171 (367)
+ .+++||+|..+-+...
T Consensus 143 ~--~i~si~iy~g~~g~~~ 159 (389)
T COG1748 143 D--EIESIDIYVGGLGEHG 159 (389)
T ss_pred c--cccEEEEEEecCCCCC
Confidence 4 6789999999987544
No 29
>PRK06740 histidinol-phosphatase; Validated
Probab=78.53 E-value=45 Score=31.98 Aligned_cols=105 Identities=11% Similarity=0.126 Sum_probs=64.4
Q ss_pred HHHHHHHhhhCCCcEEEEEeccCCCC-CC-Ch------------hHHHHHHHHHHHHHcCcEeEEeec------CCC---
Q 017700 146 NACRASLARLQIEQIGIGQLHWSTAN-YA-PP------------QELALWNGLVAMYEKGLVRAVGVS------NYG--- 202 (367)
Q Consensus 146 ~~l~~sL~~Lg~d~iDl~~lH~~~~~-~~-~~------------~~~~~~~~L~~l~~~G~ir~iGvS------~~~--- 202 (367)
..+++.|+....||+ +.-+|+.+.. .. +. .....++.+.++.+.|.+..||=- ++.
T Consensus 156 ~~~~~~l~~~~~Dyv-IgSVH~i~g~~~~~~~~~~~~~~~~~~~~~~~Yf~~~~~~i~~~~fdvIgHpDlik~f~~~~~~ 234 (331)
T PRK06740 156 QELQSLLALGDFDYV-IGSVHFLNGWGFDNPDTKEYFEEHDLYALYDTFFKTVECAIRSELFDIIAHLDNIKVFNYRLDE 234 (331)
T ss_pred HHHHHHHhcCCCCEE-EEeeeEeCCcCCCCccHHHHhcCCCHHHHHHHHHHHHHHHHHcCCCCEeeCccHHHhcCCCcch
Confidence 455667777788888 8889975311 10 00 012255788888899998777621 111
Q ss_pred ---hHHHHHHHHHHHhcCCCceeEEe-eec--ccccccchhhHHHHHHHcCCeEEE
Q 017700 203 ---PNQLVKIHDYLTARGVPLCSAQV-QFS--LLSMGENQLEIKNICDSLGIRLIS 252 (367)
Q Consensus 203 ---~~~l~~~~~~~~~~~~~~~~~q~-~~n--~~~~~~~~~~l~~~~~~~gi~v~a 252 (367)
...++++.+.+...+..+.+|-. .+. ..+.-+.. .+++.|++.|+.++.
T Consensus 235 ~~~~~~~~~I~~a~~~~g~~lEINt~~~~r~~~~e~yP~~-~il~~~~e~Gv~~tl 289 (331)
T PRK06740 235 NEQLSYYKEIARALVETNTATEINAGLYYRYPVREMCPSP-LFLQVLAKHEVPITL 289 (331)
T ss_pred hhhHHHHHHHHHHHHHcCCEEEEECccccCCCCCCCCcCH-HHHHHHHHCCCeEEE
Confidence 13567777888888877777753 121 11112233 789999999998744
No 30
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=78.39 E-value=32 Score=31.98 Aligned_cols=104 Identities=13% Similarity=0.130 Sum_probs=70.4
Q ss_pred HHHHHHHcCcEeEEee-cCCChHHHHHHHHHHHhcCCCceeEEeeecccccccchhhHHHHHHHcCCeEEEecCCCCccc
Q 017700 183 GLVAMYEKGLVRAVGV-SNYGPNQLVKIHDYLTARGVPLCSAQVQFSLLSMGENQLEIKNICDSLGIRLISYSPLGLGML 261 (367)
Q Consensus 183 ~L~~l~~~G~ir~iGv-S~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~v~a~~pl~~G~L 261 (367)
.|.+..++|+.- +|+ .......+.++.. ..|+++.++-.+..+++..... .++..++..|+..++.-|-..
T Consensus 8 ~lk~~L~~G~~~-~G~~~~~~sp~~~E~~a---~~GfD~v~iD~EHg~~~~~~l~-~~i~a~~~~g~~~lVRvp~~~--- 79 (267)
T PRK10128 8 PFKEGLRKGEVQ-IGLWLSSTTSYMAEIAA---TSGYDWLLIDGEHAPNTIQDLY-HQLQAIAPYASQPVIRPVEGS--- 79 (267)
T ss_pred HHHHHHHcCCce-EEEEecCCCcHHHHHHH---HcCCCEEEEccccCCCCHHHHH-HHHHHHHhcCCCeEEECCCCC---
Confidence 355555557753 443 2333333333332 3468888999999999876655 788888888988877655331
Q ss_pred cCCCCCCCCCCChhhhhhhhhccChHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCC--eeecCCCCHHHHHHHHhccCC
Q 017700 262 TGKYTPSKLPRGPRALLFRQILPGLKPLLRSLKEIAERRGKTIPQVAINWCICKGT--IPIPGVKSVKQVEENLGALGW 338 (367)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~g~t~~qlal~~~l~~~~--~vi~g~~~~e~l~enl~a~~~ 338 (367)
...+..+|..|. +++|-..+.|+.++.+++..+
T Consensus 80 --------------------------------------------~~~i~r~LD~GA~GIivP~V~saeeA~~~V~a~rY 114 (267)
T PRK10128 80 --------------------------------------------KPLIKQVLDIGAQTLLIPMVDTAEQARQVVSATRY 114 (267)
T ss_pred --------------------------------------------HHHHHHHhCCCCCeeEecCcCCHHHHHHHHHhcCC
Confidence 235577888887 788888888888888888776
No 31
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=77.09 E-value=55 Score=29.36 Aligned_cols=170 Identities=12% Similarity=0.075 Sum_probs=97.4
Q ss_pred CCHHHHHHHHHHHHHCCCCEEeCC-CCcCCCCCCChHHHHHHHHHhhCCCCCCCCCcEEEEeeccCCCCCCChHHHHHHH
Q 017700 70 SMDSQLQQTFNLAVENGINLFDTA-DSYGTGRLNGKSEKLLGKFISEIPGQKQVQNNIVIATKFAAYPWRLTPGQFVNAC 148 (367)
Q Consensus 70 ~~~~~a~~~l~~A~~~Gi~~~DTA-~~Yg~~~~~g~sE~~lG~al~~~~~~~~~R~~v~i~tK~~~~~~~~~~~~i~~~l 148 (367)
.+.++..++++.-.+.||.++++. +..+. ...+.+.+..+.. .. ..+.+... ...+.++..+
T Consensus 11 ~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~-----~~~~~v~~~~~~~-----~~--~~~~~~~~-----~~~~~i~~~~ 73 (237)
T PF00682_consen 11 FSTEEKLEIAKALDEAGVDYIEVGFPFASE-----DDFEQVRRLREAL-----PN--ARLQALCR-----ANEEDIERAV 73 (237)
T ss_dssp --HHHHHHHHHHHHHHTTSEEEEEHCTSSH-----HHHHHHHHHHHHH-----HS--SEEEEEEE-----SCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCCEEEEcccccCH-----HHHHHhhhhhhhh-----cc--cccceeee-----ehHHHHHHHH
Confidence 567899999999999999999999 33332 2234455554442 22 23333332 1577788777
Q ss_pred HHHHhhhCCCcEEEEEeccCC-----CCCC-ChhHHHHHHHHHHHHHcCcEeEEeec---CCChHHHHHHHHHHHhcCCC
Q 017700 149 RASLARLQIEQIGIGQLHWST-----ANYA-PPQELALWNGLVAMYEKGLVRAVGVS---NYGPNQLVKIHDYLTARGVP 219 (367)
Q Consensus 149 ~~sL~~Lg~d~iDl~~lH~~~-----~~~~-~~~~~~~~~~L~~l~~~G~ir~iGvS---~~~~~~l~~~~~~~~~~~~~ 219 (367)
+.. ...|.+.+.++.==++. -..+ ....+.+.+.++..|+.|.--.+++. .++.+.+.++.+.+...+.
T Consensus 74 ~~~-~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~- 151 (237)
T PF00682_consen 74 EAA-KEAGIDIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVAFGCEDASRTDPEELLELAEALAEAGA- 151 (237)
T ss_dssp HHH-HHTTSSEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEEEETTTGGSSHHHHHHHHHHHHHHT--
T ss_pred Hhh-HhccCCEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceEeCccccccccHHHHHHHHHHHHHcCC-
Confidence 644 57899988866432110 0000 00133466778888999998899974 4456666666666555443
Q ss_pred ceeEEeeecccccccch-hhHHHHHHHc----CCeEEEecCCCCc
Q 017700 220 LCSAQVQFSLLSMGENQ-LEIKNICDSL----GIRLISYSPLGLG 259 (367)
Q Consensus 220 ~~~~q~~~n~~~~~~~~-~~l~~~~~~~----gi~v~a~~pl~~G 259 (367)
+.+.+.=+.-...+.+ .+++...+++ .+++..+.-++.+
T Consensus 152 -~~i~l~Dt~G~~~P~~v~~lv~~~~~~~~~~~l~~H~Hnd~Gla 195 (237)
T PF00682_consen 152 -DIIYLADTVGIMTPEDVAELVRALREALPDIPLGFHAHNDLGLA 195 (237)
T ss_dssp -SEEEEEETTS-S-HHHHHHHHHHHHHHSTTSEEEEEEBBTTS-H
T ss_pred -eEEEeeCccCCcCHHHHHHHHHHHHHhccCCeEEEEecCCccch
Confidence 4444433332222221 2566666653 4677777777664
No 32
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=75.33 E-value=9.9 Score=36.16 Aligned_cols=150 Identities=17% Similarity=0.203 Sum_probs=87.2
Q ss_pred CCcceeecC-CcccCcceecccccCCCCcCCCCCCCHHHHHHHHHHHHHCCCC--EEeCCCCcCCCCCCChHHHHHHHHH
Q 017700 37 WPWEKVKMG-PLSASPMGFGTWAWGNQFLWGYQESMDSQLQQTFNLAVENGIN--LFDTADSYGTGRLNGKSEKLLGKFI 113 (367)
Q Consensus 37 ~~m~~~~lg-g~~vs~lglGt~~~g~~~~~g~~~~~~~~a~~~l~~A~~~Gi~--~~DTA~~Yg~~~~~g~sE~~lG~al 113 (367)
+||++..++ |..|-.+|+|. +|.. .++.|-..|.+ .||+++.= -| +++
T Consensus 172 spLk~~g~~pG~~vgI~GlGG--LGh~---------------aVq~AKAMG~rV~vis~~~~k--------ke----ea~ 222 (360)
T KOG0023|consen 172 SPLKRSGLGPGKWVGIVGLGG--LGHM---------------AVQYAKAMGMRVTVISTSSKK--------KE----EAI 222 (360)
T ss_pred ehhHHcCCCCCcEEEEecCcc--cchH---------------HHHHHHHhCcEEEEEeCCchh--------HH----HHH
Confidence 568888888 99988888886 6543 16677777766 56665421 24 345
Q ss_pred hhCCCCCCCCCcEEEEeeccCCCCCCChHHHHHHHHHHHhhhCCCcEEEEEeccCCCCCCChhHHHHHHHHHHHHHcCcE
Q 017700 114 SEIPGQKQVQNNIVIATKFAAYPWRLTPGQFVNACRASLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKGLV 193 (367)
Q Consensus 114 ~~~~~~~~~R~~v~i~tK~~~~~~~~~~~~i~~~l~~sL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~~~~L~~l~~~G~i 193 (367)
+.+ --+.||.+.- ++ ++.+++..++.-. +|... +. ....+-..++-||..|++
T Consensus 223 ~~L------GAd~fv~~~~-------d~-d~~~~~~~~~dg~---------~~~v~-~~---a~~~~~~~~~~lk~~Gt~ 275 (360)
T KOG0023|consen 223 KSL------GADVFVDSTE-------DP-DIMKAIMKTTDGG---------IDTVS-NL---AEHALEPLLGLLKVNGTL 275 (360)
T ss_pred Hhc------CcceeEEecC-------CH-HHHHHHHHhhcCc---------ceeee-ec---cccchHHHHHHhhcCCEE
Confidence 553 2245655542 33 3455555554322 33321 00 111134678889999999
Q ss_pred eEEeecCCChHHHHHHHHHHHhcCCCceeEEeeecccccccchhhHHHHHHHcCCeE
Q 017700 194 RAVGVSNYGPNQLVKIHDYLTARGVPLCSAQVQFSLLSMGENQLEIKNICDSLGIRL 250 (367)
Q Consensus 194 r~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~v 250 (367)
-.+|+-.. +..+..+- .-+-...+-.|..--..+-++++++|.+++|..
T Consensus 276 V~vg~p~~-~~~~~~~~-------lil~~~~I~GS~vG~~ket~E~Ldf~a~~~ik~ 324 (360)
T KOG0023|consen 276 VLVGLPEK-PLKLDTFP-------LILGRKSIKGSIVGSRKETQEALDFVARGLIKS 324 (360)
T ss_pred EEEeCcCC-cccccchh-------hhcccEEEEeeccccHHHHHHHHHHHHcCCCcC
Confidence 99999664 22222111 123345566666644444458999999998764
No 33
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=74.55 E-value=40 Score=30.90 Aligned_cols=75 Identities=15% Similarity=0.045 Sum_probs=56.1
Q ss_pred cCCCceeEEeeecccccccchhhHHHHHHHcCCeEEEecCCCCccccCCCCCCCCCCChhhhhhhhhccChHHHHHHHHH
Q 017700 216 RGVPLCSAQVQFSLLSMGENQLEIKNICDSLGIRLISYSPLGLGMLTGKYTPSKLPRGPRALLFRQILPGLKPLLRSLKE 295 (367)
Q Consensus 216 ~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~v~a~~pl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 295 (367)
.|+++.++-.+..+++...-. .++..++..|+..++.-|-..
T Consensus 32 ~G~D~v~iD~EHg~~~~~~~~-~~~~a~~~~g~~~~VRvp~~~------------------------------------- 73 (249)
T TIGR03239 32 AGFDWLLLDGEHAPNDVLTFI-PQLMALKGSASAPVVRPPWNE------------------------------------- 73 (249)
T ss_pred cCCCEEEEecccCCCCHHHHH-HHHHHHhhcCCCcEEECCCCC-------------------------------------
Confidence 468899999999999876555 788888889988888765432
Q ss_pred HHHHhCCCHHHHHHHHHHcCCC--eeecCCCCHHHHHHHHhccCC
Q 017700 296 IAERRGKTIPQVAINWCICKGT--IPIPGVKSVKQVEENLGALGW 338 (367)
Q Consensus 296 la~~~g~t~~qlal~~~l~~~~--~vi~g~~~~e~l~enl~a~~~ 338 (367)
...++.+|..|. +++|-.++.|+.++.+++..+
T Consensus 74 ----------~~~i~r~LD~Ga~gIivP~v~taeea~~~v~a~ky 108 (249)
T TIGR03239 74 ----------PVIIKRLLDIGFYNFLIPFVESAEEAERAVAATRY 108 (249)
T ss_pred ----------HHHHHHHhcCCCCEEEecCcCCHHHHHHHHHHcCC
Confidence 134456667676 778888888888888876665
No 34
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=71.62 E-value=50 Score=30.04 Aligned_cols=106 Identities=11% Similarity=0.089 Sum_probs=62.3
Q ss_pred CChHHHHHHHHHHHhhhCCCcEEEEEeccCCCCCCChhHHHHHHHHHHHHHcC-cEeEEeecCCChHHHHHHHHHHHhcC
Q 017700 139 LTPGQFVNACRASLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKG-LVRAVGVSNYGPNQLVKIHDYLTARG 217 (367)
Q Consensus 139 ~~~~~i~~~l~~sL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~~~~L~~l~~~G-~ir~iGvS~~~~~~l~~~~~~~~~~~ 217 (367)
++.+...+-++ .|..+|+++|.+-..-.+. ..|.. ...++.++++++.+ .++...++.-....++.+.+.
T Consensus 16 ~s~e~~~~i~~-~L~~~GV~~IEvg~~~~~~--~~p~~-~~~~~~i~~l~~~~~~~~~~~l~~~~~~~i~~a~~~----- 86 (265)
T cd03174 16 FSTEDKLEIAE-ALDEAGVDSIEVGSGASPK--AVPQM-EDDWEVLRAIRKLVPNVKLQALVRNREKGIERALEA----- 86 (265)
T ss_pred CCHHHHHHHHH-HHHHcCCCEEEeccCcCcc--ccccC-CCHHHHHHHHHhccCCcEEEEEccCchhhHHHHHhC-----
Confidence 35555555444 4778999999987665331 11221 23578889999988 566666665444444444442
Q ss_pred CCceeEEeeecccc--------ccc-----chhhHHHHHHHcCCeEEEec
Q 017700 218 VPLCSAQVQFSLLS--------MGE-----NQLEIKNICDSLGIRLISYS 254 (367)
Q Consensus 218 ~~~~~~q~~~n~~~--------~~~-----~~~~l~~~~~~~gi~v~a~~ 254 (367)
.++.+++.+...+ +.. .-...+++++++|+.+...-
T Consensus 87 -g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~ 135 (265)
T cd03174 87 -GVDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSL 135 (265)
T ss_pred -CcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 3455666555441 111 11356788899998876543
No 35
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=71.41 E-value=95 Score=29.48 Aligned_cols=165 Identities=15% Similarity=0.211 Sum_probs=94.0
Q ss_pred CCCCHHHHHHHHHHHHHCCCCEEeCCCCcCCCCCCChHHHHHHHHHhhCCCCCCCCCcEEEEeeccCCCCCCChHHHHHH
Q 017700 68 QESMDSQLQQTFNLAVENGINLFDTADSYGTGRLNGKSEKLLGKFISEIPGQKQVQNNIVIATKFAAYPWRLTPGQFVNA 147 (367)
Q Consensus 68 ~~~~~~~a~~~l~~A~~~Gi~~~DTA~~Yg~~~~~g~sE~~lG~al~~~~~~~~~R~~v~i~tK~~~~~~~~~~~~i~~~ 147 (367)
..++.++..++++.+.+.|++.+.-.. |.+=..-+-.+++-. ++... .-.++.|+|-.. .+.+.
T Consensus 47 ~~ls~eei~~~i~~~~~~gi~~I~~tG--GEPll~~~l~~li~~-i~~~~----~~~~i~itTNG~---------ll~~~ 110 (331)
T PRK00164 47 ELLSLEEIERLVRAFVALGVRKVRLTG--GEPLLRKDLEDIIAA-LAALP----GIRDLALTTNGY---------LLARR 110 (331)
T ss_pred ccCCHHHHHHHHHHHHHCCCCEEEEEC--CCCcCccCHHHHHHH-HHhcC----CCceEEEEcCch---------hHHHH
Confidence 456788999999999999998887432 221022223333333 33311 123577777641 11122
Q ss_pred HHHHHhhhCCCcEEEEEeccCCCC-C----CChhHHHHHHHHHHHHHcCc----EeEEeecCCChHHHHHHHHHHHhcCC
Q 017700 148 CRASLARLQIEQIGIGQLHWSTAN-Y----APPQELALWNGLVAMYEKGL----VRAVGVSNYGPNQLVKIHDYLTARGV 218 (367)
Q Consensus 148 l~~sL~~Lg~d~iDl~~lH~~~~~-~----~~~~~~~~~~~L~~l~~~G~----ir~iGvS~~~~~~l~~~~~~~~~~~~ 218 (367)
-+.|...|++.|- +-||..++. + .....+.++++++.+++.|. |..+.+.+.+.+++.++.+.++..++
T Consensus 111 -~~~L~~agl~~i~-ISlds~~~e~~~~i~~~~~~~~vl~~i~~~~~~g~~~v~i~~vv~~g~n~~ei~~l~~~~~~~gv 188 (331)
T PRK00164 111 -AAALKDAGLDRVN-VSLDSLDPERFKAITGRDRLDQVLAGIDAALAAGLTPVKVNAVLMKGVNDDEIPDLLEWAKDRGI 188 (331)
T ss_pred -HHHHHHcCCCEEE-EEeccCCHHHhccCCCCCCHHHHHHHHHHHHHCCCCcEEEEEEEECCCCHHHHHHHHHHHHhCCC
Confidence 2345556766654 445544321 1 11134568999999999885 34555556677889999998887664
Q ss_pred CceeEEeeeccccccc--------chhhHHHHHHHcCCeEEE
Q 017700 219 PLCSAQVQFSLLSMGE--------NQLEIKNICDSLGIRLIS 252 (367)
Q Consensus 219 ~~~~~q~~~n~~~~~~--------~~~~l~~~~~~~gi~v~a 252 (367)
. +.-++|.++.... ...++++..+++|+.+..
T Consensus 189 ~--v~~ie~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 228 (331)
T PRK00164 189 Q--LRFIELMPTGEGNEWFRKHHLSGAEIRARLAERGWTLQP 228 (331)
T ss_pred e--EEEEEeeECCCCcchhhhcCCCHHHHHHHHHhccCcccc
Confidence 3 4445555543221 123577778777655433
No 36
>PRK07329 hypothetical protein; Provisional
Probab=69.61 E-value=89 Score=28.43 Aligned_cols=107 Identities=11% Similarity=0.059 Sum_probs=60.4
Q ss_pred HHHHHHHHhhhCCCcEEEEEeccCCCC-CCC-----hhHHH----HHHHHHHHHHcC-cEeEEe---e-------cCCC-
Q 017700 145 VNACRASLARLQIEQIGIGQLHWSTAN-YAP-----PQELA----LWNGLVAMYEKG-LVRAVG---V-------SNYG- 202 (367)
Q Consensus 145 ~~~l~~sL~~Lg~d~iDl~~lH~~~~~-~~~-----~~~~~----~~~~L~~l~~~G-~ir~iG---v-------S~~~- 202 (367)
...+++-|.+...||+ +.-+|+.+.. ... ...++ -++.+.++.+.+ .+..+| + ....
T Consensus 82 ~~~~~~~l~~~~~Dyv-IgSvH~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~v~~~~~fdvlgHpDl~~r~~~~~~~~~ 160 (246)
T PRK07329 82 EDDILDFLANKDFDLK-LLSVHHNGVYDYLDDEVADMDKKELLQEYFEKMEEAIGRVHDADVLAHFDYGLRLFDLTVEEL 160 (246)
T ss_pred HHHHHHHhccCCCCeE-EEEEEEcCCCCCccHHHhcCCHHHHHHHHHHHHHHHHHccCCCCEeeeccHHHHhCCCCCcCh
Confidence 3455666777788999 8999986321 000 11122 347888888876 654444 2 1111
Q ss_pred ---hHHHHHHHHHHHhcCCCceeEEeeec-ccccccchhhHHHHHHHcCCeEEEe
Q 017700 203 ---PNQLVKIHDYLTARGVPLCSAQVQFS-LLSMGENQLEIKNICDSLGIRLISY 253 (367)
Q Consensus 203 ---~~~l~~~~~~~~~~~~~~~~~q~~~n-~~~~~~~~~~l~~~~~~~gi~v~a~ 253 (367)
...++++.+.+...+..+.+|-..+. ....... ..+++.|++.|+..++.
T Consensus 161 ~~~~~~~~~i~~~~~~~~~~lEiNt~~~~~~~~~~~~-~~~l~~~~~~g~~~i~~ 214 (246)
T PRK07329 161 KAFEPQLTRIFAKMIDNDLAFELNTKSMYLYGNEGLY-RYAIELYKQLGGKLFSI 214 (246)
T ss_pred HHHHHHHHHHHHHHHHcCCeEEEECcccccCCCCcch-HHHHHHHHHcCCeEEEe
Confidence 23456777777777776666654331 1111111 26788999999864443
No 37
>TIGR01856 hisJ_fam histidinol phosphate phosphatase HisJ family. This model represents the histidinol phosphate phosphatase HisJ of Bacillus subtilis, and related proteins from a number of species within a larger family of phosphatases in the PHP hydrolase family. HisJ catalyzes the penultimate step of histidine biosynthesis but shows no homology to the functionally equivalent sequence in E. coli, a domain of the bifunctional HisB protein. Note, however, that many species have two members and that Clostridium perfringens, predicted not to make histidine, has five members of this family; this family is designated subfamily rather than equivalog to indicate that members may not all act as HisJ.
Probab=67.44 E-value=90 Score=28.48 Aligned_cols=174 Identities=14% Similarity=0.186 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHHCCCCEEeCCCCcCCC----CC-C--ChHHHHHHHHHhhCCC-CCCCCCcEEEEeeccCCCCCCChHHH
Q 017700 73 SQLQQTFNLAVENGINLFDTADSYGTG----RL-N--GKSEKLLGKFISEIPG-QKQVQNNIVIATKFAAYPWRLTPGQF 144 (367)
Q Consensus 73 ~~a~~~l~~A~~~Gi~~~DTA~~Yg~~----~~-~--g~sE~~lG~al~~~~~-~~~~R~~v~i~tK~~~~~~~~~~~~i 144 (367)
....+.++.|.+.|+..+=-+++.... +. . +.....+-+.++...+ ....++++-|-.-+-.. +- ...
T Consensus 15 ~~~ee~v~~A~~~Gl~~i~~TdH~p~~~~~~~~~~~~~~~~~~~~~Y~~~i~~l~~~y~~~i~I~~GiE~~---~~-~~~ 90 (253)
T TIGR01856 15 DTLEEVVQEAIQLGFEEICFTEHAPLPFEYPEETALDKMAFSSLPEYFKEINRLKKEYADKLKILIGLEVD---YI-PGF 90 (253)
T ss_pred CCHHHHHHHHHHcCCCEEEecCCCCcccCCCccccccchhHHHHHHHHHHHHHHHHHhhCCCeEEEEEEec---cc-cch
Confidence 457789999999999988655542210 00 0 0112223222222100 00022333332222111 11 233
Q ss_pred HHHHHHHHhhhCCCcEEEEEeccCCC---CCCC-----------hhH----HHHHHHHHHHHHcC----cEeEEeec---
Q 017700 145 VNACRASLARLQIEQIGIGQLHWSTA---NYAP-----------PQE----LALWNGLVAMYEKG----LVRAVGVS--- 199 (367)
Q Consensus 145 ~~~l~~sL~~Lg~d~iDl~~lH~~~~---~~~~-----------~~~----~~~~~~L~~l~~~G----~ir~iGvS--- 199 (367)
...+++.|++.+.||+ +..+|+... +... ... ...++.+.++.+.. .+.|+.+-
T Consensus 91 ~~~~~~~l~~~~~D~v-igSvH~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~i~~~~~~dvlgH~Dli~~~ 169 (253)
T TIGR01856 91 EDFTKDFLDEYGLDFV-IGSVHFLGGIPIDFDAEEFNEGLVSFYGNLEQAQRDYFESVYDSIQALFKPLVIGHIDLVQKF 169 (253)
T ss_pred HHHHHHHHHHCCCCeE-EEEEEeecCCCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCCCCCcccHhHHHHh
Confidence 4556777888888998 899998642 1110 011 11233444555532 23333321
Q ss_pred -CC------C----hHHHHHHHHHHHhcCCCceeEEeeec--ccccccchhhHHHHHHHcCCeEEE
Q 017700 200 -NY------G----PNQLVKIHDYLTARGVPLCSAQVQFS--LLSMGENQLEIKNICDSLGIRLIS 252 (367)
Q Consensus 200 -~~------~----~~~l~~~~~~~~~~~~~~~~~q~~~n--~~~~~~~~~~l~~~~~~~gi~v~a 252 (367)
.. . .+.++++.+.+...|..+.+|-..+. .-+.-+.. .+++.|++.|+.++.
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~il~~~~~~g~~lEiNt~g~r~~~~~~yP~~-~il~~~~~~g~~itl 234 (253)
T TIGR01856 170 GPLFTDVSSFSDEVYELLQRILKLVASQGKALEFNTSGLRKPLEEAYPSK-ELLNLAKELGIPLVL 234 (253)
T ss_pred CccccccccccHHHHHHHHHHHHHHHHcCCEEEEEcHhhcCCCCCCCCCH-HHHHHHHHcCCCEEe
Confidence 10 0 12356777777777766665543221 11122223 788899998887543
No 38
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=67.28 E-value=61 Score=29.68 Aligned_cols=102 Identities=12% Similarity=0.105 Sum_probs=65.3
Q ss_pred HHHHHHcCcEeEEee--cCCChHHHHHHHHHHHhcCCCceeEEeeecccccccchhhHHHHHHHcCCeEEEecCCCCccc
Q 017700 184 LVAMYEKGLVRAVGV--SNYGPNQLVKIHDYLTARGVPLCSAQVQFSLLSMGENQLEIKNICDSLGIRLISYSPLGLGML 261 (367)
Q Consensus 184 L~~l~~~G~ir~iGv--S~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~v~a~~pl~~G~L 261 (367)
|.+..++|+. -+|+ ..-++..++. +...|+++.++-++.++++..... .++..++..|+.+++.-|-..
T Consensus 3 lk~~l~~g~~-~~g~~~~~~~p~~~e~----~~~~g~D~v~iDlEH~~~~~~~~~-~~~~a~~~~g~~~~VRv~~~~--- 73 (249)
T TIGR02311 3 FKQALKEGQP-QIGLWLGLADPYAAEI----CAGAGFDWLLIDGEHAPNDVRTIL-SQLQALAPYPSSPVVRPAIGD--- 73 (249)
T ss_pred HHHHHHCCCc-eEEEEEeCCCcHHHHH----HHhcCCCEEEEeccCCCCCHHHHH-HHHHHHHhcCCCcEEECCCCC---
Confidence 3444455774 3444 2223333333 333468888888999997655444 567777777877777643221
Q ss_pred cCCCCCCCCCCChhhhhhhhhccChHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCC--eeecCCCCHHHHHHHHhccCC
Q 017700 262 TGKYTPSKLPRGPRALLFRQILPGLKPLLRSLKEIAERRGKTIPQVAINWCICKGT--IPIPGVKSVKQVEENLGALGW 338 (367)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~g~t~~qlal~~~l~~~~--~vi~g~~~~e~l~enl~a~~~ 338 (367)
+ .-++.++..|. +++|-..++|++++.+++..+
T Consensus 74 ------------------------------------------~--~~i~~~Ld~Ga~gIivP~v~s~e~a~~~v~~~~y 108 (249)
T TIGR02311 74 ------------------------------------------P--VLIKQLLDIGAQTLLVPMIETAEQAEAAVAATRY 108 (249)
T ss_pred ------------------------------------------H--HHHHHHhCCCCCEEEecCcCCHHHHHHHHHHcCC
Confidence 1 14577888877 788888899998888888764
No 39
>PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=67.04 E-value=22 Score=31.68 Aligned_cols=74 Identities=16% Similarity=0.100 Sum_probs=44.3
Q ss_pred ChHHHHHHHHHHHhhhCCCcEEEEEeccCCCCCCChhHHHHHHHHHHHHHcCcEeEEeec-CCChHHHHHHHHHHHhcCC
Q 017700 140 TPGQFVNACRASLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKGLVRAVGVS-NYGPNQLVKIHDYLTARGV 218 (367)
Q Consensus 140 ~~~~i~~~l~~sL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvS-~~~~~~l~~~~~~~~~~~~ 218 (367)
+.++++. ...+|.|++=+++.... +.+.+ .+ ....+.+.. .+.++.+||. |-+.+.+.++.+. .
T Consensus 10 ~~eda~~-----~~~~GaD~iGfIf~~~S-pR~V~--~~-~a~~i~~~~-~~~~~~VgVf~~~~~~~i~~~~~~-----~ 74 (207)
T PRK13958 10 TIKDVTA-----ASQLPIDAIGFIHYEKS-KRHQT--IT-QIKKLASAV-PNHIDKVCVVVNPDLTTIEHILSN-----T 74 (207)
T ss_pred cHHHHHH-----HHHcCCCEEEEecCCCC-cccCC--HH-HHHHHHHhC-CCCCCEEEEEeCCCHHHHHHHHHh-----C
Confidence 4555543 45699999998754432 22222 22 123332222 3557889985 6677777776664 6
Q ss_pred CceeEEeeec
Q 017700 219 PLCSAQVQFS 228 (367)
Q Consensus 219 ~~~~~q~~~n 228 (367)
.++++|++-+
T Consensus 75 ~~d~vQLHG~ 84 (207)
T PRK13958 75 SINTIQLHGT 84 (207)
T ss_pred CCCEEEECCC
Confidence 7899999863
No 40
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=66.22 E-value=1.3e+02 Score=28.89 Aligned_cols=139 Identities=20% Similarity=0.145 Sum_probs=80.2
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEeCCCCcCCCC----CC------ChH----HHHHHHHHhhCCCCCCCCCcEEEEeeccC
Q 017700 69 ESMDSQLQQTFNLAVENGINLFDTADSYGTGR----LN------GKS----EKLLGKFISEIPGQKQVQNNIVIATKFAA 134 (367)
Q Consensus 69 ~~~~~~a~~~l~~A~~~Gi~~~DTA~~Yg~~~----~~------g~s----E~~lG~al~~~~~~~~~R~~v~i~tK~~~ 134 (367)
.++.+.-.++.++|-+.|+-+|=|--.+..-. ++ +.. ..+|-... . .-+.+.++|-..
T Consensus 86 ~~p~e~~~~Lke~a~~~Gi~~~SSPfd~~svd~l~~~~~~ayKIaS~E~~~~plik~iA-~------~~kPiIlSTGma- 157 (347)
T COG2089 86 ETPLEWHAQLKEYARKRGIIFFSSPFDLTAVDLLESLNPPAYKIASGEINDLPLIKYIA-K------KGKPIILSTGMA- 157 (347)
T ss_pred cCCHHHHHHHHHHHHHcCeEEEecCCCHHHHHHHHhcCCCeEEecCccccChHHHHHHH-h------cCCCEEEEcccc-
Confidence 45567788899999999998886544332200 00 000 11222221 2 223567777653
Q ss_pred CCCCCChHHHHHHHHHHHhhhCCCcEEEEEeccCCCCCCChhHHHHHHHHHHHHHcCcEeEEeecCCChHHHHHHHHHHH
Q 017700 135 YPWRLTPGQFVNACRASLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKGLVRAVGVSNYGPNQLVKIHDYLT 214 (367)
Q Consensus 135 ~~~~~~~~~i~~~l~~sL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~ 214 (367)
+.+++.++++...++=. .|+.+||+......|.+ +--+.+|..|++.= -.-||+|.|+..-+.-+...+.
T Consensus 158 -----~~~ei~~av~~~r~~g~---~~i~LLhC~s~YPap~e-d~NL~~i~~l~~~F-n~~vGlSDHT~g~~a~l~AvAL 227 (347)
T COG2089 158 -----TIEEIEEAVAILRENGN---PDIALLHCTSAYPAPFE-DVNLKAIPKLAEAF-NAIVGLSDHTLGILAPLAAVAL 227 (347)
T ss_pred -----cHHHHHHHHHHHHhcCC---CCeEEEEecCCCCCCHH-HhhHHHHHHHHHHh-CCccccccCccchhHHHHHHHh
Confidence 67788888876655533 39999999754444543 22456666666543 4479999999875544444322
Q ss_pred hcCCCceeEEeeecc
Q 017700 215 ARGVPLCSAQVQFSL 229 (367)
Q Consensus 215 ~~~~~~~~~q~~~n~ 229 (367)
| -.+++=+|.+
T Consensus 228 --G--A~viEKHFtl 238 (347)
T COG2089 228 --G--ASVIEKHFTL 238 (347)
T ss_pred --c--ccceeeeeee
Confidence 2 2445555554
No 41
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=66.15 E-value=85 Score=28.69 Aligned_cols=19 Identities=5% Similarity=0.006 Sum_probs=13.0
Q ss_pred hHHHHHHHcCCeEEEecCC
Q 017700 238 EIKNICDSLGIRLISYSPL 256 (367)
Q Consensus 238 ~l~~~~~~~gi~v~a~~pl 256 (367)
..+++|+..|...+...|.
T Consensus 94 ~~i~~a~~lGa~~i~~~~~ 112 (275)
T PRK09856 94 LAMDMAKEMNAGYTLISAA 112 (275)
T ss_pred HHHHHHHHhCCCEEEEcCC
Confidence 4567777777777766554
No 42
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=65.74 E-value=30 Score=31.85 Aligned_cols=65 Identities=9% Similarity=0.072 Sum_probs=49.1
Q ss_pred ChHHHHHHHHHHHhhhC--------------------------CCcEEEEEeccCCCCCCChhHHHHHHHHHHHHHcCcE
Q 017700 140 TPGQFVNACRASLARLQ--------------------------IEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKGLV 193 (367)
Q Consensus 140 ~~~~i~~~l~~sL~~Lg--------------------------~d~iDl~~lH~~~~~~~~~~~~~~~~~L~~l~~~G~i 193 (367)
+.++ ++.++++|+++| ....|+++|..|-..-++....++++-|.+|+++|+
T Consensus 113 ~~~d-~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~- 190 (254)
T COG1121 113 NKKD-KEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGK- 190 (254)
T ss_pred cHHH-HHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCC-
Confidence 3444 678888888888 567899999988655555566779999999999998
Q ss_pred eEEeecCCChHHHH
Q 017700 194 RAVGVSNYGPNQLV 207 (367)
Q Consensus 194 r~iGvS~~~~~~l~ 207 (367)
.|=+..|+...+.
T Consensus 191 -tIl~vtHDL~~v~ 203 (254)
T COG1121 191 -TVLMVTHDLGLVM 203 (254)
T ss_pred -EEEEEeCCcHHhH
Confidence 5667777766544
No 43
>PRK07328 histidinol-phosphatase; Provisional
Probab=65.55 E-value=78 Score=29.16 Aligned_cols=170 Identities=14% Similarity=0.155 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHCCCCEEeCCCCcCCC--------CCCChHHHHHHHHHhh---CCCCCCCCCcEEEEeeccCCCCCCChH
Q 017700 74 QLQQTFNLAVENGINLFDTADSYGTG--------RLNGKSEKLLGKFISE---IPGQKQVQNNIVIATKFAAYPWRLTPG 142 (367)
Q Consensus 74 ~a~~~l~~A~~~Gi~~~DTA~~Yg~~--------~~~g~sE~~lG~al~~---~~~~~~~R~~v~i~tK~~~~~~~~~~~ 142 (367)
...+.++.|.+.|+..+=.+++.... ...+....-+-..++. +.+ ...+=+|.+---++.. +
T Consensus 19 ~~ee~v~~A~~~Gl~~i~~TdH~~~~~~~~~~~~~~~~~~~~~~~~y~~~i~~l~~-~y~~i~Il~GiE~~~~-----~- 91 (269)
T PRK07328 19 TPEEYVQAARRAGLKEIGFTDHLPMYFLPPEWRDPGLAMRLEELPFYVSEVERLRA-RFPDLYVRLGIEADYH-----P- 91 (269)
T ss_pred CHHHHHHHHHHCCCCEEEEecCCCCCCcCcccccccccccHHHHHHHHHHHHHHHH-HcCCCeEEEEEEeccc-----C-
Confidence 36788999999999988666553210 0001111112222211 110 0011123333333221 2
Q ss_pred HHHHHHHHHHhhhCCCcEEEEEeccCCCC-C-CC--------hhHHH----HHHHHHHHHHcCcEeEEeecC----C---
Q 017700 143 QFVNACRASLARLQIEQIGIGQLHWSTAN-Y-AP--------PQELA----LWNGLVAMYEKGLVRAVGVSN----Y--- 201 (367)
Q Consensus 143 ~i~~~l~~sL~~Lg~d~iDl~~lH~~~~~-~-~~--------~~~~~----~~~~L~~l~~~G~ir~iGvS~----~--- 201 (367)
.....+++.|++-..||+ +..+|+.+.. . .+ ...++ .++.+.++.+.|.+.-||=-. +
T Consensus 92 ~~~~~~~~~l~~~~~D~v-igSvH~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~~~~dvlgH~d~i~~~~~~ 170 (269)
T PRK07328 92 GTEEFLERLLEAYPFDYV-IGSVHYLGAWGFDNPDFVAEYEERDLDELYRRYFALVEQAARSGLFDIIGHPDLIKKFGHR 170 (269)
T ss_pred CcHHHHHHHHHhCCCCeE-EEEEeecCCcCCCChhHHHHHhcCCHHHHHHHHHHHHHHHHHcCCCCEeeCccHHHHcCCC
Confidence 234555666777777887 8888986321 0 00 11112 234577788888876666211 1
Q ss_pred ----ChHHHHHHHHHHHhcCCCceeEEeee--cccccccchhhHHHHHHHcCCeEEE
Q 017700 202 ----GPNQLVKIHDYLTARGVPLCSAQVQF--SLLSMGENQLEIKNICDSLGIRLIS 252 (367)
Q Consensus 202 ----~~~~l~~~~~~~~~~~~~~~~~q~~~--n~~~~~~~~~~l~~~~~~~gi~v~a 252 (367)
....++++.+.+...|..+.+|-..+ ..-+.-+.. .++..|++.|+.++.
T Consensus 171 ~~~~~~~~~~~il~~~~~~g~~lEiNt~~~r~~~~~~yp~~-~il~~~~~~g~~iti 226 (269)
T PRK07328 171 PREDLTELYEEALDVIAAAGLALEVNTAGLRKPVGEIYPSP-ALLRACRERGIPVVL 226 (269)
T ss_pred CchhHHHHHHHHHHHHHHcCCEEEEEchhhcCCCCCCCCCH-HHHHHHHHcCCCEEE
Confidence 12334677777777776666664322 111222223 789999999988543
No 44
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=65.34 E-value=1.3e+02 Score=29.78 Aligned_cols=113 Identities=11% Similarity=-0.006 Sum_probs=55.8
Q ss_pred HHHHHHHHhhCCCCCCCCCcEEEEeeccCCCCCCChHHHHHHHHHHHhhhC-CCcEEEEEeccCCCCCCCh-hHHHHHHH
Q 017700 106 EKLLGKFISEIPGQKQVQNNIVIATKFAAYPWRLTPGQFVNACRASLARLQ-IEQIGIGQLHWSTANYAPP-QELALWNG 183 (367)
Q Consensus 106 E~~lG~al~~~~~~~~~R~~v~i~tK~~~~~~~~~~~~i~~~l~~sL~~Lg-~d~iDl~~lH~~~~~~~~~-~~~~~~~~ 183 (367)
|+.|-++++..-+. .+.+=|+|.|-+.+. .--+++..-+++.-++.. ...+.++.+|.|+-..... ..+.++++
T Consensus 66 ~~~L~~~i~~~~~~-~~p~~I~v~~tC~~~---liGdDi~~v~~~~~~~~~~~~~~~vi~v~tpgf~g~~~~G~~~a~~a 141 (428)
T cd01965 66 EDNLIEALKNLLSR-YKPDVIGVLTTCLTE---TIGDDVAGFIKEFRAEGPEPADFPVVYASTPSFKGSHETGYDNAVKA 141 (428)
T ss_pred HHHHHHHHHHHHHh-cCCCEEEEECCcchh---hcCCCHHHHHHHHHhhccCCCCCeEEEeeCCCCCCcHHHHHHHHHHH
Confidence 77777777664210 123336666665322 122233333333222210 0235677788764332111 22223444
Q ss_pred HHH-H------HHcCcEeEEeecCCChHHHHHHHHHHHhcCCCcee
Q 017700 184 LVA-M------YEKGLVRAVGVSNYGPNQLVKIHDYLTARGVPLCS 222 (367)
Q Consensus 184 L~~-l------~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~~ 222 (367)
|-+ + ++.++|.-||-++.....+.++.+..+..|+++.+
T Consensus 142 l~~~~~~~~~~~~~~~VNlig~~~~~~~d~~el~~lL~~~Gl~v~~ 187 (428)
T cd01965 142 IIEQLAKPSEVKKNGKVNLLPGFPLTPGDVREIKRILEAFGLEPII 187 (428)
T ss_pred HHHHHhcccCCCCCCeEEEECCCCCCccCHHHHHHHHHHcCCCEEE
Confidence 432 2 23567888987765555567777777777765433
No 45
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=64.57 E-value=1.3e+02 Score=28.55 Aligned_cols=134 Identities=16% Similarity=0.251 Sum_probs=76.8
Q ss_pred CCCCHHHHHHHHHHHHHCCCCEEeCCCCcCCCC-CCChHHHHHHHHHhhCCCCCCCCCcEEEEeeccCCCCCCChHHHHH
Q 017700 68 QESMDSQLQQTFNLAVENGINLFDTADSYGTGR-LNGKSEKLLGKFISEIPGQKQVQNNIVIATKFAAYPWRLTPGQFVN 146 (367)
Q Consensus 68 ~~~~~~~a~~~l~~A~~~Gi~~~DTA~~Yg~~~-~~g~sE~~lG~al~~~~~~~~~R~~v~i~tK~~~~~~~~~~~~i~~ 146 (367)
..++.++..++++.+.+.|++.|.-. |.-| ..-.-.+++.. ++..+ .-+++.|+|-. .. +.
T Consensus 41 ~~ls~eei~~~i~~~~~~gv~~V~lt---GGEPll~~~l~~li~~-i~~~~----gi~~v~itTNG-~l--------l~- 102 (334)
T TIGR02666 41 ELLTFEEIERLVRAFVGLGVRKVRLT---GGEPLLRKDLVELVAR-LAALP----GIEDIALTTNG-LL--------LA- 102 (334)
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEE---CccccccCCHHHHHHH-HHhcC----CCCeEEEEeCc-hh--------HH-
Confidence 35678899999999999999888643 3211 22233444444 22211 11267787753 21 11
Q ss_pred HHHHHHhhhCCCcEEEEEeccCCCC-CC-----ChhHHHHHHHHHHHHHcCc----EeEEeecCCChHHHHHHHHHHHhc
Q 017700 147 ACRASLARLQIEQIGIGQLHWSTAN-YA-----PPQELALWNGLVAMYEKGL----VRAVGVSNYGPNQLVKIHDYLTAR 216 (367)
Q Consensus 147 ~l~~sL~~Lg~d~iDl~~lH~~~~~-~~-----~~~~~~~~~~L~~l~~~G~----ir~iGvS~~~~~~l~~~~~~~~~~ 216 (367)
..-+.|...|.+++- +-|+..++. +. ....+.+++.++.+++.|. |..+-+.+.+.+++..+.+.+...
T Consensus 103 ~~~~~L~~~gl~~v~-ISld~~~~~~~~~i~~~~~~~~~vl~~i~~l~~~G~~~v~in~vv~~g~n~~ei~~l~~~~~~~ 181 (334)
T TIGR02666 103 RHAKDLKEAGLKRVN-VSLDSLDPERFAKITRRGGRLEQVLAGIDAALAAGLEPVKLNTVVMRGVNDDEIVDLAEFAKER 181 (334)
T ss_pred HHHHHHHHcCCCeEE-EecccCCHHHhheeCCCCCCHHHHHHHHHHHHHcCCCcEEEEEEEeCCCCHHHHHHHHHHHHhc
Confidence 123456677777655 345544321 11 1134568889999988875 222334456677788888887766
Q ss_pred CCCc
Q 017700 217 GVPL 220 (367)
Q Consensus 217 ~~~~ 220 (367)
++.+
T Consensus 182 gv~~ 185 (334)
T TIGR02666 182 GVTL 185 (334)
T ss_pred CCeE
Confidence 6543
No 46
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=62.73 E-value=1.8e+02 Score=30.94 Aligned_cols=96 Identities=9% Similarity=0.041 Sum_probs=56.2
Q ss_pred ChHHHHHHHHHHHhhhCCCcEEEEEeccCCCCCCChhHHHHHHHHHHHHHc--CcEeEEeecCCChHHHHHHHHHHHhcC
Q 017700 140 TPGQFVNACRASLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEK--GLVRAVGVSNYGPNQLVKIHDYLTARG 217 (367)
Q Consensus 140 ~~~~i~~~l~~sL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~~~~L~~l~~~--G~ir~iGvS~~~~~~l~~~~~~~~~~~ 217 (367)
+.++|++-++.....-.....-+|+|+..+ .+ ....+++|.+..++ +.+..|.+++.....+..++.-|
T Consensus 105 gVDdIReLie~~~~~P~~gr~KViIIDEah----~L-s~~AaNALLKTLEEPP~~v~FILaTtep~kLlpTIrSRC---- 175 (700)
T PRK12323 105 GVDEMAQLLDKAVYAPTAGRFKVYMIDEVH----ML-TNHAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRC---- 175 (700)
T ss_pred CHHHHHHHHHHHHhchhcCCceEEEEEChH----hc-CHHHHHHHHHhhccCCCCceEEEEeCChHhhhhHHHHHH----
Confidence 567777777665544344566789998552 22 22356777777766 88999999996555555555543
Q ss_pred CCceeEEeeecccccccchhhHHHHHHHcCCe
Q 017700 218 VPLCSAQVQFSLLSMGENQLEIKNICDSLGIR 249 (367)
Q Consensus 218 ~~~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~ 249 (367)
.++.|+.+....-...+...|.+.|+.
T Consensus 176 -----q~f~f~~ls~eei~~~L~~Il~~Egi~ 202 (700)
T PRK12323 176 -----LQFNLKQMPPGHIVSHLDAILGEEGIA 202 (700)
T ss_pred -----HhcccCCCChHHHHHHHHHHHHHcCCC
Confidence 344455443322222344455555544
No 47
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]
Probab=62.64 E-value=74 Score=28.62 Aligned_cols=103 Identities=15% Similarity=0.123 Sum_probs=63.2
Q ss_pred hHHHHHHHHHHHHHcCcEeEEeecC-CChHHHHHHHHHHHhcCCCceeEEeeecccccccchhhHHHHHHHcCCeEEEec
Q 017700 176 QELALWNGLVAMYEKGLVRAVGVSN-YGPNQLVKIHDYLTARGVPLCSAQVQFSLLSMGENQLEIKNICDSLGIRLISYS 254 (367)
Q Consensus 176 ~~~~~~~~L~~l~~~G~ir~iGvS~-~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~v~a~~ 254 (367)
+.+++.++|..|+ +.+|..-- .+..|...+...|+..|.. .|.|+-...+. +++...-+.|..++.-+
T Consensus 74 eve~L~~~l~~l~----~d~iv~GaI~s~yqk~rve~lc~~lGl~------~~~PLWg~d~~-ell~e~~~~Gf~~~Iv~ 142 (223)
T COG2102 74 EVEELKEALRRLK----VDGIVAGAIASEYQKERVERLCEELGLK------VYAPLWGRDPE-ELLEEMVEAGFEAIIVA 142 (223)
T ss_pred hHHHHHHHHHhCc----ccEEEEchhhhHHHHHHHHHHHHHhCCE------EeecccCCCHH-HHHHHHHHcCCeEEEEE
Confidence 3455677777777 44443311 2345666777777766643 35666544444 78888888888887777
Q ss_pred CCCCccccCCCCCCCCCCChhhhhhhhhccChHHHHHHHHHHHHHhCCCHH
Q 017700 255 PLGLGMLTGKYTPSKLPRGPRALLFRQILPGLKPLLRSLKEIAERRGKTIP 305 (367)
Q Consensus 255 pl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~g~t~~ 305 (367)
.-+.|+-. .|... .+ ..+.++.+..+.++||+.|+
T Consensus 143 Vsa~gL~~-~~lGr---------~i------~~~~~e~l~~l~~~ygi~~~ 177 (223)
T COG2102 143 VSAEGLDE-SWLGR---------RI------DREFLEELKSLNRRYGIHPA 177 (223)
T ss_pred EeccCCCh-HHhCC---------cc------CHHHHHHHHHHHHhcCCCcc
Confidence 77776421 11110 11 12455889999999998774
No 48
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=62.32 E-value=1.3e+02 Score=30.84 Aligned_cols=106 Identities=13% Similarity=0.154 Sum_probs=58.8
Q ss_pred HHHHHHHHhhCCCCCCCCCc-EEEEeeccCCCCCCChHHHHHHHHHHHhhhCCCcEEEEEeccCCCCCCC-hhHHHHHHH
Q 017700 106 EKLLGKFISEIPGQKQVQNN-IVIATKFAAYPWRLTPGQFVNACRASLARLQIEQIGIGQLHWSTANYAP-PQELALWNG 183 (367)
Q Consensus 106 E~~lG~al~~~~~~~~~R~~-v~i~tK~~~~~~~~~~~~i~~~l~~sL~~Lg~d~iDl~~lH~~~~~~~~-~~~~~~~~~ 183 (367)
++.|-++++...+ ..+.+ ++|++-+ ..+-|-..++...+.++.+.++++.++.++-.... ...+.+++.
T Consensus 70 ~~~L~~aI~~~~~--~~~P~~I~V~sTC-------~selIGdDi~~~~~~~~~~~~pvi~v~t~gf~g~~~~g~~~al~~ 140 (511)
T TIGR01278 70 QTRLVDTVRRVDD--RFKPDLIVVTPSC-------TSSLLQEDLGNLAAAAGLDKSKVIVADVNAYRRKENQAADRTLTQ 140 (511)
T ss_pred HHHHHHHHHHHHH--hcCCCEEEEeCCC-------hHHHhccCHHHHHHHhccCCCcEEEecCCCcccchhHHHHHHHHH
Confidence 6677777765421 12333 4555554 34445455555555566556889999987432211 112222222
Q ss_pred HH-HH----------HHcCcEeEEeecCC---ChHHHHHHHHHHHhcCCCc
Q 017700 184 LV-AM----------YEKGLVRAVGVSNY---GPNQLVKIHDYLTARGVPL 220 (367)
Q Consensus 184 L~-~l----------~~~G~ir~iGvS~~---~~~~l~~~~~~~~~~~~~~ 220 (367)
+- .+ .+++.|.=||.++. .+..+.++.+..+..|+.+
T Consensus 141 lv~~~~~~~~~~~~~~~~~~VNIiG~~~l~~~~~~D~~elkrlL~~lGi~v 191 (511)
T TIGR01278 141 LVRRFAKEQPKPGRTTEKPSVNLLGPASLGFHHRHDLIELRRLLKTLGIEV 191 (511)
T ss_pred HHHHHHhccccccccCCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHCCCeE
Confidence 22 11 13456999998763 4566778888877777654
No 49
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=62.22 E-value=55 Score=30.22 Aligned_cols=72 Identities=17% Similarity=0.181 Sum_probs=55.4
Q ss_pred CChHHHHHHHHHHHhhhC--------------------------CCcEEEEEeccCCCCCCChhHHHHHHHHHHHHHcCc
Q 017700 139 LTPGQFVNACRASLARLQ--------------------------IEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKGL 192 (367)
Q Consensus 139 ~~~~~i~~~l~~sL~~Lg--------------------------~d~iDl~~lH~~~~~~~~~~~~~~~~~L~~l~~~G~ 192 (367)
....++++.++.-|+||+ .-..||+.|..|-...+|+..+-+-++.-+++++|.
T Consensus 102 m~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlILDEPFSGLDPVN~elLk~~I~~lk~~Ga 181 (300)
T COG4152 102 MPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGA 181 (300)
T ss_pred CcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEEEecCCccCCChhhHHHHHHHHHHHHhcCC
Confidence 467788888888888887 335677777776444566665556678889999999
Q ss_pred EeEEeecCCChHHHHHHHHH
Q 017700 193 VRAVGVSNYGPNQLVKIHDY 212 (367)
Q Consensus 193 ir~iGvS~~~~~~l~~~~~~ 212 (367)
.|=+|+|..++++++.+.
T Consensus 182 --tIifSsH~Me~vEeLCD~ 199 (300)
T COG4152 182 --TIIFSSHRMEHVEELCDR 199 (300)
T ss_pred --EEEEecchHHHHHHHhhh
Confidence 788999999998888765
No 50
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]
Probab=62.02 E-value=45 Score=34.97 Aligned_cols=148 Identities=17% Similarity=0.201 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHHCCCCEEeCCCCcCCCCCCChHHHHHHHHHhhCCCCCCCCCcEEEEeeccCCCCCCChHHHHHHHHHHH
Q 017700 73 SQLQQTFNLAVENGINLFDTADSYGTGRLNGKSEKLLGKFISEIPGQKQVQNNIVIATKFAAYPWRLTPGQFVNACRASL 152 (367)
Q Consensus 73 ~~a~~~l~~A~~~Gi~~~DTA~~Yg~~~~~g~sE~~lG~al~~~~~~~~~R~~v~i~tK~~~~~~~~~~~~i~~~l~~sL 152 (367)
|-+.++++.|-|.|++.+- .|.. |..+. .=+ ..-|+-|++.|.-+ |-...-.+++..
T Consensus 43 EIaIRvFRa~tEL~~~tvA---iYse-------qD~~s-MHR------qKADEaY~iGk~l~------PV~AYL~ideii 99 (1176)
T KOG0369|consen 43 EIAIRVFRAATELSMRTVA---IYSE-------QDRLS-MHR------QKADEAYLIGKGLP------PVGAYLAIDEII 99 (1176)
T ss_pred cchhHHHHHHhhhcceEEE---EEec-------cchhh-hhh------hccccceecccCCC------chhhhhhHHHHH
Confidence 6789999999999999875 7754 32222 111 24567889888733 333333444444
Q ss_pred hhhCCCcEEEEEeccCCCCCCChhHHHHHHHHHHHHHcCcEeEEeecCCChHHHHHHHH------HHHhcCCCceeEEee
Q 017700 153 ARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKGLVRAVGVSNYGPNQLVKIHD------YLTARGVPLCSAQVQ 226 (367)
Q Consensus 153 ~~Lg~d~iDl~~lH~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~------~~~~~~~~~~~~q~~ 226 (367)
+--+...+|. +| |.-.+.... -+.....++.| |++||=| ++.++.+=+ .+-..|+++ +-..
T Consensus 100 ~iak~~~vda--vH-PGYGFLSEr----sdFA~av~~AG-i~fiGPs---peVi~~mGDKv~AR~~Ai~agVpv--VPGT 166 (1176)
T KOG0369|consen 100 SIAKKHNVDA--VH-PGYGFLSER----SDFAQAVQDAG-IRFIGPS---PEVIDSMGDKVAARAIAIEAGVPV--VPGT 166 (1176)
T ss_pred HHHHHcCCCe--ec-CCccccccc----hHHHHHHHhcC-ceEeCCC---HHHHHHhhhHHHHHHHHHHcCCCc--cCCC
Confidence 4444445554 67 433222211 24444555555 7899984 444433222 222223332 1111
Q ss_pred ecccccccchhhHHHHHHHcCCeEEEecCCCCc
Q 017700 227 FSLLSMGENQLEIKNICDSLGIRLISYSPLGLG 259 (367)
Q Consensus 227 ~n~~~~~~~~~~l~~~~~~~gi~v~a~~pl~~G 259 (367)
-.++. .. .+.+++|++.|.+||.-..+++|
T Consensus 167 pgPit--t~-~EA~eF~k~yG~PvI~KAAyGGG 196 (1176)
T KOG0369|consen 167 PGPIT--TV-EEALEFVKEYGLPVIIKAAYGGG 196 (1176)
T ss_pred CCCcc--cH-HHHHHHHHhcCCcEEEeecccCC
Confidence 11111 12 37899999999999999999887
No 51
>PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=61.83 E-value=58 Score=30.48 Aligned_cols=110 Identities=12% Similarity=0.087 Sum_probs=69.3
Q ss_pred CcEeEEeecCCChHHHHHHHHHHHhcCCCceeEEeeeccccccc-chhhHHHHHHHcCCeEEEecCCCCccccCCCCCCC
Q 017700 191 GLVRAVGVSNYGPNQLVKIHDYLTARGVPLCSAQVQFSLLSMGE-NQLEIKNICDSLGIRLISYSPLGLGMLTGKYTPSK 269 (367)
Q Consensus 191 G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~-~~~~l~~~~~~~gi~v~a~~pl~~G~L~~~~~~~~ 269 (367)
.++-.+-=++.+.+.+..+.+.++.....+. +.-++++... .+..+.+.+++.++-++..+.-.+.
T Consensus 157 ~kv~~vsQTT~~~~~~~~iv~~l~~~~~~~~---v~~TIC~aT~~RQ~a~~~La~~vD~miVVGg~~SsN---------- 223 (281)
T PRK12360 157 DKACVVAQTTIIPELWEDILNVIKLKSKELV---FFNTICSATKKRQESAKELSKEVDVMIVIGGKHSSN---------- 223 (281)
T ss_pred cCEEEEECCCCcHHHHHHHHHHHHHhCcccc---cCCCcchhhhhHHHHHHHHHHhCCEEEEecCCCCcc----------
Confidence 4444444455666777777777664322222 1222222222 2236788888888877764333221
Q ss_pred CCCChhhhhhhhhccChHHHHHHHHHHHHHhCC------CHHHHHHHHHHcCCC-eeecCCCCHHHHHHHH
Q 017700 270 LPRGPRALLFRQILPGLKPLLRSLKEIAERRGK------TIPQVAINWCICKGT-IPIPGVKSVKQVEENL 333 (367)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~g~------t~~qlal~~~l~~~~-~vi~g~~~~e~l~enl 333 (367)
-.+|.++|++.+. ++.++-..|+..... .+..|+|+|+.+-+.+
T Consensus 224 --------------------T~rL~eia~~~~~~t~~Ie~~~el~~~~~~~~~~VGitaGASTP~~li~eV 274 (281)
T PRK12360 224 --------------------TQKLVKICEKNCPNTFHIETADELDLEMLKDYKIIGITAGASTPDWIIEEV 274 (281)
T ss_pred --------------------HHHHHHHHHHHCCCEEEECChHHCCHHHhCCCCEEEEEccCCCCHHHHHHH
Confidence 0688889988873 788999999987666 7899999999776654
No 52
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=61.49 E-value=91 Score=28.84 Aligned_cols=111 Identities=14% Similarity=0.168 Sum_probs=0.0
Q ss_pred CCCChHHHHHHHHHHHhhhCCCcEEEEEeccCCCCCCCh---hHHHHHHHHHHHHHcCcEeEEeecCCChHHHHHHHHHH
Q 017700 137 WRLTPGQFVNACRASLARLQIEQIGIGQLHWSTANYAPP---QELALWNGLVAMYEKGLVRAVGVSNYGPNQLVKIHDYL 213 (367)
Q Consensus 137 ~~~~~~~i~~~l~~sL~~Lg~d~iDl~~lH~~~~~~~~~---~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~~ 213 (367)
+.++.+...+-.+. |.++|+|+|++-+........... ...+.++.+..+.+ +..+..+++......++.+....
T Consensus 15 ~~f~~~~~~~ia~~-L~~~GVd~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~l~~a~ 92 (266)
T cd07944 15 WDFGDEFVKAIYRA-LAAAGIDYVEIGYRSSPEKEFKGKSAFCDDEFLRRLLGDSK-GNTKIAVMVDYGNDDIDLLEPAS 92 (266)
T ss_pred ccCCHHHHHHHHHH-HHHCCCCEEEeecCCCCccccCCCccCCCHHHHHHHHhhhc-cCCEEEEEECCCCCCHHHHHHHh
Q ss_pred HhcCCCceeEEeeecccccccchhhHHHHHHHcCCeEEEe
Q 017700 214 TARGVPLCSAQVQFSLLSMGENQLEIKNICDSLGIRLISY 253 (367)
Q Consensus 214 ~~~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~v~a~ 253 (367)
. ..++.+.+.+..-+-..-. ..+++++++|+.|...
T Consensus 93 ~---~gv~~iri~~~~~~~~~~~-~~i~~ak~~G~~v~~~ 128 (266)
T cd07944 93 G---SVVDMIRVAFHKHEFDEAL-PLIKAIKEKGYEVFFN 128 (266)
T ss_pred c---CCcCEEEEecccccHHHHH-HHHHHHHHCCCeEEEE
No 53
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=61.29 E-value=37 Score=37.25 Aligned_cols=73 Identities=14% Similarity=0.160 Sum_probs=60.3
Q ss_pred CCChHHHHHHHHHHHhhhC--------------------------CCcEEEEEeccCCCCCCChhHHHHHHHHHHHHHcC
Q 017700 138 RLTPGQFVNACRASLARLQ--------------------------IEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKG 191 (367)
Q Consensus 138 ~~~~~~i~~~l~~sL~~Lg--------------------------~d~iDl~~lH~~~~~~~~~~~~~~~~~L~~l~~~G 191 (367)
++...++.+.++..|+.+| +....+++|..|...-+|.....+|+.+.++++.|
T Consensus 669 G~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g 748 (885)
T KOG0059|consen 669 GLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNG 748 (885)
T ss_pred CCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcC
Confidence 3466788888999999887 45678999999877777877888999999999999
Q ss_pred cEeEEeecCCChHHHHHHHHH
Q 017700 192 LVRAVGVSNYGPNQLVKIHDY 212 (367)
Q Consensus 192 ~ir~iGvS~~~~~~l~~~~~~ 212 (367)
+ ++=+..|+.++.+.+..-
T Consensus 749 ~--aiiLTSHsMeE~EaLCtR 767 (885)
T KOG0059|consen 749 K--AIILTSHSMEEAEALCTR 767 (885)
T ss_pred C--EEEEEcCCHHHHHHHhhh
Confidence 9 777999998887776654
No 54
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
Probab=60.50 E-value=63 Score=30.55 Aligned_cols=112 Identities=14% Similarity=0.146 Sum_probs=69.7
Q ss_pred CcEeEEeecCCChHHHHHHHHHHHhcCCCceeEEeeecccccccc-hhhHHHHHHHcCCeEEEecCCCCccccCCCCCCC
Q 017700 191 GLVRAVGVSNYGPNQLVKIHDYLTARGVPLCSAQVQFSLLSMGEN-QLEIKNICDSLGIRLISYSPLGLGMLTGKYTPSK 269 (367)
Q Consensus 191 G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~-~~~l~~~~~~~gi~v~a~~pl~~G~L~~~~~~~~ 269 (367)
.++-.+-=++.+.+.++++.+.++.....+.+ ...-++++.... +..+.+.+++.++-++..+.=.+.
T Consensus 156 ~~v~vvsQTT~~~~~~~~i~~~l~~~~~~~~v-~~~nTIC~aT~~RQ~a~~~La~~vD~miVVGg~~SsN---------- 224 (298)
T PRK01045 156 DKLALVTQTTLSVDDTAEIIAALKERFPEIQG-PPKDDICYATQNRQEAVKELAPQADLVIVVGSKNSSN---------- 224 (298)
T ss_pred CcEEEEEcCCCcHHHHHHHHHHHHHhCcCccc-CCCCCcchhhHHHHHHHHHHHhhCCEEEEECCCCCcc----------
Confidence 44555555556677777777776643211111 011233332222 346788888888777764333221
Q ss_pred CCCChhhhhhhhhccChHHHHHHHHHHHHHhC------CCHHHHHHHHHHcCCC-eeecCCCCHHHHHHHH
Q 017700 270 LPRGPRALLFRQILPGLKPLLRSLKEIAERRG------KTIPQVAINWCICKGT-IPIPGVKSVKQVEENL 333 (367)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~g------~t~~qlal~~~l~~~~-~vi~g~~~~e~l~enl 333 (367)
-.+|.++|++++ -++.++-..|+..... .+..|+|+|+.+-+.+
T Consensus 225 --------------------T~kL~~i~~~~~~~t~~Ie~~~el~~~~l~~~~~VGitaGASTP~~li~eV 275 (298)
T PRK01045 225 --------------------SNRLREVAEEAGAPAYLIDDASEIDPEWFKGVKTVGVTAGASAPEWLVQEV 275 (298)
T ss_pred --------------------HHHHHHHHHHHCCCEEEECChHHCcHHHhcCCCEEEEEecCCCCHHHHHHH
Confidence 068888998876 4789999999976655 6899999998765554
No 55
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=60.24 E-value=1.3e+02 Score=28.08 Aligned_cols=117 Identities=16% Similarity=0.050 Sum_probs=68.7
Q ss_pred CCCChHHHHHHHHHHHhhhCCCcEEEEEeccCCCCCCChhHHHHHHHHHHHHH--cCcE-eEEeecCCChHHHHHHHHHH
Q 017700 137 WRLTPGQFVNACRASLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYE--KGLV-RAVGVSNYGPNQLVKIHDYL 213 (367)
Q Consensus 137 ~~~~~~~i~~~l~~sL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~~~~L~~l~~--~G~i-r~iGvS~~~~~~l~~~~~~~ 213 (367)
...+.+.+++-++..++.+|++. +++-........+..+|-.+.++..++ .|++ -..|++..+..+..++.+.+
T Consensus 16 g~iD~~~~~~~i~~l~~~~Gv~g---i~~~GstGE~~~Lt~~Er~~~~~~~~~~~~~~~~viagv~~~~~~~ai~~a~~a 92 (288)
T cd00954 16 GEINEDVLRAIVDYLIEKQGVDG---LYVNGSTGEGFLLSVEERKQIAEIVAEAAKGKVTLIAHVGSLNLKESQELAKHA 92 (288)
T ss_pred CCCCHHHHHHHHHHHHhcCCCCE---EEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCeEEeccCCCCHHHHHHHHHHH
Confidence 35688889999999988778755 444433223233333333344443333 3554 45689887777777777778
Q ss_pred HhcCCCceeEEeeecccccccchhhHHH----HHHHc-CCeEEEec-CCCCc
Q 017700 214 TARGVPLCSAQVQFSLLSMGENQLEIKN----ICDSL-GIRLISYS-PLGLG 259 (367)
Q Consensus 214 ~~~~~~~~~~q~~~n~~~~~~~~~~l~~----~~~~~-gi~v~a~~-pl~~G 259 (367)
+..|.+-.++..+|..- ..++++++ .|+.- +++|+.|. |...|
T Consensus 93 ~~~Gad~v~~~~P~y~~---~~~~~i~~~~~~v~~a~~~lpi~iYn~P~~tg 141 (288)
T cd00954 93 EELGYDAISAITPFYYK---FSFEEIKDYYREIIAAAASLPMIIYHIPALTG 141 (288)
T ss_pred HHcCCCEEEEeCCCCCC---CCHHHHHHHHHHHHHhcCCCCEEEEeCccccC
Confidence 88887654444444322 12224444 45556 78999884 43333
No 56
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=60.09 E-value=1.4e+02 Score=27.44 Aligned_cols=104 Identities=13% Similarity=0.031 Sum_probs=61.3
Q ss_pred ChHHHHHHHHHHHhhhCCCcEEEEEe-ccCCCCCCCh--hHHHHHHHHHHHHHcCcEeEEeecCCChHHHHHHHHHHHhc
Q 017700 140 TPGQFVNACRASLARLQIEQIGIGQL-HWSTANYAPP--QELALWNGLVAMYEKGLVRAVGVSNYGPNQLVKIHDYLTAR 216 (367)
Q Consensus 140 ~~~~i~~~l~~sL~~Lg~d~iDl~~l-H~~~~~~~~~--~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~ 216 (367)
+.+.+.+..++.+ .-|-|.||+-.- -+|+....+. +.+.+...++.+++.-.+- |.+-++.++.++++++.
T Consensus 22 ~~~~~~~~a~~~~-~~GAdiIDIG~~st~p~~~~i~~~~E~~rl~~~v~~i~~~~~~p-lSIDT~~~~v~e~al~~---- 95 (257)
T cd00739 22 SLDKAVAHAEKMI-AEGADIIDIGGESTRPGADPVSVEEELERVIPVLEALRGELDVL-ISVDTFRAEVARAALEA---- 95 (257)
T ss_pred CHHHHHHHHHHHH-HCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCc-EEEeCCCHHHHHHHHHh----
Confidence 5556655555554 558999998532 2342221111 2223444566777663333 78889999999888875
Q ss_pred CCCceeEEeeecccccccchhhHHHHHHHcCCeEEEecC
Q 017700 217 GVPLCSAQVQFSLLSMGENQLEIKNICDSLGIRLISYSP 255 (367)
Q Consensus 217 ~~~~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~v~a~~p 255 (367)
|.+ .+|- .+..... ..+++.++++|..++.+.-
T Consensus 96 G~~-iINd--isg~~~~---~~~~~l~~~~~~~vV~m~~ 128 (257)
T cd00739 96 GAD-IIND--VSGGSDD---PAMLEVAAEYGAPLVLMHM 128 (257)
T ss_pred CCC-EEEe--CCCCCCC---hHHHHHHHHcCCCEEEECC
Confidence 322 2222 2333211 3789999999999999543
No 57
>PRK08392 hypothetical protein; Provisional
Probab=59.84 E-value=1.3e+02 Score=26.74 Aligned_cols=155 Identities=16% Similarity=0.197 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHCCCCEEeCCCCcCCCCCCChHHHHHHHHHhhCCCCCCCCCcEEE--EeeccCCCCCCChHHHHHHHHHH
Q 017700 74 QLQQTFNLAVENGINLFDTADSYGTGRLNGKSEKLLGKFISEIPGQKQVQNNIVI--ATKFAAYPWRLTPGQFVNACRAS 151 (367)
Q Consensus 74 ~a~~~l~~A~~~Gi~~~DTA~~Yg~~~~~g~sE~~lG~al~~~~~~~~~R~~v~i--~tK~~~~~~~~~~~~i~~~l~~s 151 (367)
...+.++.|.+.|++.+=.+++.... ....-+..+-+. +.+. .+.++.| ..-++.. ++. ....++.
T Consensus 15 ~~~e~v~~A~~~Gl~~i~iTdH~~~~-~~~~~~~y~~~i-~~l~----~~~~i~il~GiE~~~~-----~~~-~~~~~~~ 82 (215)
T PRK08392 15 SVRDNIAEAERKGLRLVGISDHIHYF-TPSKFNAYINEI-RQWG----EESEIVVLAGIEANIT-----PNG-VDITDDF 82 (215)
T ss_pred CHHHHHHHHHHcCCCEEEEccCCCcc-chhhHHHHHHHH-HHHh----hccCceEEEeEEeeec-----CCc-chhHHHH
Confidence 46788999999999999777665320 001112222222 2211 1123333 2222221 111 2233344
Q ss_pred HhhhCCCcEEEEEeccCCCCCCChhHHHHHHHHHHHHHcCcEeEEeecC-------C-ChHHHHHHHHHHHhcCCCceeE
Q 017700 152 LARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKGLVRAVGVSN-------Y-GPNQLVKIHDYLTARGVPLCSA 223 (367)
Q Consensus 152 L~~Lg~d~iDl~~lH~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvS~-------~-~~~~l~~~~~~~~~~~~~~~~~ 223 (367)
++. .||+ +.-+|.... +......++.+.++.+.|.+.-+|=-. + ....++++.+.+...|..+.+|
T Consensus 83 ~~~--~D~v-I~SvH~~~~---~~~~~~Y~~~~~~~~~~~~~dvlgH~d~~~~~~~~~~~~~~~~i~~~~~~~g~~lEiN 156 (215)
T PRK08392 83 AKK--LDYV-IASVHEWFG---RPEHHEYIELVKLALMDENVDIIGHFGNSFPYIGYPSEEELKEILDLAEAYGKAFEIS 156 (215)
T ss_pred Hhh--CCEE-EEEeecCcC---CcHHHHHHHHHHHHHhcCCCCEEeCCCccccCCCCchHHHHHHHHHHHHHhCCEEEEe
Confidence 443 5777 778884321 112344678888888888766555211 1 1246778888888888766666
Q ss_pred EeeecccccccchhhHHHHHHHcCCeEEE
Q 017700 224 QVQFSLLSMGENQLEIKNICDSLGIRLIS 252 (367)
Q Consensus 224 q~~~n~~~~~~~~~~l~~~~~~~gi~v~a 252 (367)
- .+ +.+.. .+++.|++.|+.++.
T Consensus 157 t-~~----~~p~~-~~l~~~~~~G~~~~i 179 (215)
T PRK08392 157 S-RY----RVPDL-EFIRECIKRGIKLTF 179 (215)
T ss_pred C-CC----CCCCH-HHHHHHHHcCCEEEE
Confidence 4 12 22333 789999999987643
No 58
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=59.69 E-value=1.7e+02 Score=28.05 Aligned_cols=98 Identities=13% Similarity=0.104 Sum_probs=48.7
Q ss_pred HHHhhhCCCcEEEEEeccCCCCCCChhHHHHHHHHHHHHHcCcE-eEEeecCC---ChHHHHHHHHHHHhcCCCceeEEe
Q 017700 150 ASLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKGLV-RAVGVSNY---GPNQLVKIHDYLTARGVPLCSAQV 225 (367)
Q Consensus 150 ~sL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~~~~L~~l~~~G~i-r~iGvS~~---~~~~l~~~~~~~~~~~~~~~~~q~ 225 (367)
+.-+.+|.|+||+-+.-.. .+....+.++....++...+.=.+ --|..|.. +++.+++.++.++.. ++-++-.
T Consensus 83 ~q~~~~GAd~Idl~~~s~d-p~~~d~~~~e~~~~Vk~V~eavd~PL~Id~s~n~~kD~evleaale~~~g~--~pLInSa 159 (319)
T PRK04452 83 KCVEEYGADMITLHLISTD-PNGKDKSPEEAAKTVEEVLQAVDVPLIIGGSGNPEKDAEVLEKVAEAAEGE--RCLLGSA 159 (319)
T ss_pred HHHHHhCCCEEEEECCCCC-cccccchHHHHHHHHHHHHHhCCCCEEEecCCCCCCCHHHHHHHHHHhCCC--CCEEEEC
Confidence 4445788888886543321 111111222233333333332222 12444432 566777777775422 2322222
Q ss_pred eecccccccchhhHHHHHHHcCCeEEEecCC
Q 017700 226 QFSLLSMGENQLEIKNICDSLGIRLISYSPL 256 (367)
Q Consensus 226 ~~n~~~~~~~~~~l~~~~~~~gi~v~a~~pl 256 (367)
.. ...+ .+.+.|+++|..|++.+|.
T Consensus 160 t~-----en~~-~i~~lA~~y~~~Vva~s~~ 184 (319)
T PRK04452 160 EE-----DNYK-KIAAAAMAYGHAVIAWSPL 184 (319)
T ss_pred CH-----HHHH-HHHHHHHHhCCeEEEEcHH
Confidence 21 1122 7888888888888887654
No 59
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=59.08 E-value=1.7e+02 Score=28.01 Aligned_cols=158 Identities=13% Similarity=0.112 Sum_probs=85.0
Q ss_pred CHHHHHHHHHHHHHCCCCEEeCC--CCcCCCCCCChHHHHHHHHHhhCCCCCCCCCcEEEEeeccCCCCCCChHHHHHHH
Q 017700 71 MDSQLQQTFNLAVENGINLFDTA--DSYGTGRLNGKSEKLLGKFISEIPGQKQVQNNIVIATKFAAYPWRLTPGQFVNAC 148 (367)
Q Consensus 71 ~~~~a~~~l~~A~~~Gi~~~DTA--~~Yg~~~~~g~sE~~lG~al~~~~~~~~~R~~v~i~tK~~~~~~~~~~~~i~~~l 148 (367)
+.++..+.++.+.+.|++.|-.- ..|...+....-.+.+ +++++. -.+++.|....- ...+.++..+-+
T Consensus 139 ~~~~~~~~a~~~~~~Gf~~~Kik~g~~~~~~~~~~~d~~~v-~~ir~~-----~g~~~~l~vDaN---~~~~~~~a~~~~ 209 (357)
T cd03316 139 SPEELAEEAKRAVAEGFTAVKLKVGGPDSGGEDLREDLARV-RAVREA-----VGPDVDLMVDAN---GRWDLAEAIRLA 209 (357)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcCCCCCcchHHHHHHHHHH-HHHHHh-----hCCCCEEEEECC---CCCCHHHHHHHH
Confidence 35777788888889999998743 2221000000011222 333331 223455555542 123554443332
Q ss_pred HHHHhhhCCCcEEEEEeccCCCCCCChhHHHHHHHHHHHHHcCcEe-EEeecCCChHHHHHHHHHHHhcCCCceeEEeee
Q 017700 149 RASLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKGLVR-AVGVSNYGPNQLVKIHDYLTARGVPLCSAQVQF 227 (367)
Q Consensus 149 ~~sL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~~~~L~~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~ 227 (367)
+ .|+.+ ++.++..|-.. . -++.+.+|++.-.|. ..|=|.++.+.+..+++. ...+++|+..
T Consensus 210 ~-~l~~~-----~i~~iEqP~~~----~---~~~~~~~l~~~~~ipi~~dE~~~~~~~~~~~i~~-----~~~d~v~~k~ 271 (357)
T cd03316 210 R-ALEEY-----DLFWFEEPVPP----D---DLEGLARLRQATSVPIAAGENLYTRWEFRDLLEA-----GAVDIIQPDV 271 (357)
T ss_pred H-HhCcc-----CCCeEcCCCCc----c---CHHHHHHHHHhCCCCEEeccccccHHHHHHHHHh-----CCCCEEecCc
Confidence 2 23333 44456655221 1 256777888875554 333445667777766654 3467777776
Q ss_pred cccccccchhhHHHHHHHcCCeEEEecC
Q 017700 228 SLLSMGENQLEIKNICDSLGIRLISYSP 255 (367)
Q Consensus 228 n~~~~~~~~~~l~~~~~~~gi~v~a~~p 255 (367)
..+---..-.++...|+++|+.++..+-
T Consensus 272 ~~~GGi~~~~~i~~~a~~~g~~~~~~~~ 299 (357)
T cd03316 272 TKVGGITEAKKIAALAEAHGVRVAPHGA 299 (357)
T ss_pred cccCCHHHHHHHHHHHHHcCCeEeccCC
Confidence 5542112223789999999999887653
No 60
>KOG1549 consensus Cysteine desulfurase NFS1 [Amino acid transport and metabolism]
Probab=58.48 E-value=87 Score=31.09 Aligned_cols=164 Identities=16% Similarity=0.191 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHHCCCCEEeCCCCcCCCCC--CChHHHHHHHHHhhCCCCCCCCCcEEEEeeccCCCCCCChHHHHHHHHH
Q 017700 73 SQLQQTFNLAVENGINLFDTADSYGTGRL--NGKSEKLLGKFISEIPGQKQVQNNIVIATKFAAYPWRLTPGQFVNACRA 150 (367)
Q Consensus 73 ~~a~~~l~~A~~~Gi~~~DTA~~Yg~~~~--~g~sE~~lG~al~~~~~~~~~R~~v~i~tK~~~~~~~~~~~~i~~~l~~ 150 (367)
-...+.+..++..+..-=|.- .||.... ...+-+.+.+.|.. .-++ ++.|--... +..-+.+++-.
T Consensus 57 ~~Vldam~~~~~~~~~nPh~~-~y~w~~~~~~E~aR~~VAklInA------d~~d-IiFts~ATE----s~Nlvl~~v~~ 124 (428)
T KOG1549|consen 57 PRVLDAMLPYLLEYLGNPHSR-SYGWKAEDAVEAAREQVAKLINA------DPSD-IVFTSGATE----SNNLVLKGVAR 124 (428)
T ss_pred HHHHHHHHHHHHHhhcCCCcc-ccchhhhHHHHHHHHHHHHHhCC------CCCc-EEEeCCchH----HHHHHHHHhhc
Confidence 344455555555544433332 4553100 11222445555544 3344 444443321 33445555555
Q ss_pred HHhhhCCCcEEEEEeccCCCCCCChhHHHHHHHHHHHHHcCc-EeEEeecCCChHHHHHHHHHHHhcCCCceeEEeeecc
Q 017700 151 SLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKGL-VRAVGVSNYGPNQLVKIHDYLTARGVPLCSAQVQFSL 229 (367)
Q Consensus 151 sL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~~~~L~~l~~~G~-ir~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~ 229 (367)
.... ++++ .++.+|.- .+. +.+..+.|+++|. ++++.|.+-....++.+.+..+.. ...+.++.--|-
T Consensus 125 ~~~~-~~~k-~iitl~~e----H~~----v~~s~~~l~~~g~~Vt~lpv~~~~~~d~~~~~~~i~~~-T~lv~I~~Vnn~ 193 (428)
T KOG1549|consen 125 FFGD-KTKK-HIITLQTE----HPC----VLDSCRALQEEGLEVTYLPVEDSGLVDISKLREAIRSK-TRLVSIMHVNNE 193 (428)
T ss_pred cccc-cccc-eEEEeccc----Ccc----hhHHHHHHHhcCeEEEEeccCccccccHHHHHHhcCCC-ceEEEEEecccC
Confidence 5555 5554 56777731 111 5677888888885 588888866666666666663321 222222222221
Q ss_pred c-ccccchhhHHHHHHHcCCeEEEecCCCCcc
Q 017700 230 L-SMGENQLEIKNICDSLGIRLISYSPLGLGM 260 (367)
Q Consensus 230 ~-~~~~~~~~l~~~~~~~gi~v~a~~pl~~G~ 260 (367)
. -..+-+ ++...|++.||.+++-...+-|.
T Consensus 194 ~gv~~Pv~-EI~~icr~~~v~v~~DaAQavG~ 224 (428)
T KOG1549|consen 194 IGVLQPVK-EIVKICREEGVQVHVDAAQAVGK 224 (428)
T ss_pred ccccccHH-HHHHHhCcCCcEEEeehhhhcCC
Confidence 1 111223 78889999988877666655553
No 61
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=58.22 E-value=1.5e+02 Score=27.10 Aligned_cols=156 Identities=13% Similarity=0.149 Sum_probs=87.3
Q ss_pred CHHHHHHHHHHHHHCCCCEEeCCCCcCCCCCCChHHHH--HHHHHhhCCCCCCCCCcEEEEeeccCCCCCCChHHHHHHH
Q 017700 71 MDSQLQQTFNLAVENGINLFDTADSYGTGRLNGKSEKL--LGKFISEIPGQKQVQNNIVIATKFAAYPWRLTPGQFVNAC 148 (367)
Q Consensus 71 ~~~~a~~~l~~A~~~Gi~~~DTA~~Yg~~~~~g~sE~~--lG~al~~~~~~~~~R~~v~i~tK~~~~~~~~~~~~i~~~l 148 (367)
+.++..+.++.+++.|++.|-.-- |. ..++. .=+++++. ..+++.|.-..- ..++.++..+-+
T Consensus 85 ~~~~~~~~~~~~~~~G~~~~KiKv--g~-----~~~~d~~~v~~vr~~-----~g~~~~l~vDan---~~~~~~~a~~~~ 149 (265)
T cd03315 85 EPAEVAEEARRALEAGFRTFKLKV--GR-----DPARDVAVVAALREA-----VGDDAELRVDAN---RGWTPKQAIRAL 149 (265)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEec--CC-----CHHHHHHHHHHHHHh-----cCCCCEEEEeCC---CCcCHHHHHHHH
Confidence 346677788888899999887532 21 11222 22334431 223444443331 123555444333
Q ss_pred HHHHhhhCCCcEEEEEeccCCCCCCChhHHHHHHHHHHHHHcCcEe-EEeecCCChHHHHHHHHHHHhcCCCceeEEeee
Q 017700 149 RASLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKGLVR-AVGVSNYGPNQLVKIHDYLTARGVPLCSAQVQF 227 (367)
Q Consensus 149 ~~sL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~~~~L~~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~ 227 (367)
+.|+.++.+ ++..|-.. . -++.+.+|++.-.+. ..|=+.++...+..+++. ..++++|+..
T Consensus 150 -~~l~~~~i~-----~iEeP~~~----~---d~~~~~~l~~~~~ipia~dE~~~~~~~~~~~i~~-----~~~d~v~~k~ 211 (265)
T cd03315 150 -RALEDLGLD-----YVEQPLPA----D---DLEGRAALARATDTPIMADESAFTPHDAFRELAL-----GAADAVNIKT 211 (265)
T ss_pred -HHHHhcCCC-----EEECCCCc----c---cHHHHHHHHhhCCCCEEECCCCCCHHHHHHHHHh-----CCCCEEEEec
Confidence 344455543 44545221 1 256677777765554 344455666777666654 4577888877
Q ss_pred cccccccchhhHHHHHHHcCCeEEEecCCCCc
Q 017700 228 SLLSMGENQLEIKNICDSLGIRLISYSPLGLG 259 (367)
Q Consensus 228 n~~~~~~~~~~l~~~~~~~gi~v~a~~pl~~G 259 (367)
+..---.+-.++...|+++|+.++..+.+..+
T Consensus 212 ~~~GGi~~~~~~~~~A~~~gi~~~~~~~~~s~ 243 (265)
T cd03315 212 AKTGGLTKAQRVLAVAEALGLPVMVGSMIESG 243 (265)
T ss_pred ccccCHHHHHHHHHHHHHcCCcEEecCccchH
Confidence 66532122237899999999999987666554
No 62
>cd01966 Nitrogenase_NifN_1 Nitrogenase_nifN1: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=58.19 E-value=2e+02 Score=28.52 Aligned_cols=116 Identities=10% Similarity=0.074 Sum_probs=60.9
Q ss_pred CCcCCCCCCChHHHHHHHHHhhCCCCCCCCCcEEEEeeccCCCCCCChHHHHHHHHHHHhhhC-CCcEEEEEeccCCCCC
Q 017700 94 DSYGTGRLNGKSEKLLGKFISEIPGQKQVQNNIVIATKFAAYPWRLTPGQFVNACRASLARLQ-IEQIGIGQLHWSTANY 172 (367)
Q Consensus 94 ~~Yg~~~~~g~sE~~lG~al~~~~~~~~~R~~v~i~tK~~~~~~~~~~~~i~~~l~~sL~~Lg-~d~iDl~~lH~~~~~~ 172 (367)
-.||. |+-|-++++...+ ....+=|+|.|-+.+. .--+++..-+++.-++.- ...+.++.+|.|+...
T Consensus 61 ~VfGg-------~~~L~~~i~~~~~-~~~p~~I~V~ttc~~e---iIGdDi~~v~~~~~~~~p~~~~~~vi~v~t~gf~g 129 (417)
T cd01966 61 TILGG-------GENLEEALDTLAE-RAKPKVIGLLSTGLTE---TRGEDIAGALKQFRAEHPELADVPVVYVSTPDFEG 129 (417)
T ss_pred EEECC-------HHHHHHHHHHHHH-hcCCCEEEEECCCccc---ccccCHHHHHHHHHhhccccCCCeEEEecCCCCCC
Confidence 36776 6666666655321 0123446677766432 122334433333323310 0146788899874322
Q ss_pred C-ChhHHHHHHHHH-HH--------HHcCcEeEEeecCCChHHHHHHHHHHHhcCCCc
Q 017700 173 A-PPQELALWNGLV-AM--------YEKGLVRAVGVSNYGPNQLVKIHDYLTARGVPL 220 (367)
Q Consensus 173 ~-~~~~~~~~~~L~-~l--------~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~ 220 (367)
. ....+.++++|. .+ +++++|.=||-++..+..++++.+..+..|+.+
T Consensus 130 ~~~~G~~~a~~al~~~l~~~~~~~~~~~~~VNiig~~~~~~~D~~eik~lL~~~Gl~v 187 (417)
T cd01966 130 SLEDGWAAAVEAIIEALVEPGSRTVTDPRQVNLLPGAHLTPGDVEELKDIIEAFGLEP 187 (417)
T ss_pred cHHHHHHHHHHHHHHHhcccccccCCCCCcEEEECCCCCCHHHHHHHHHHHHHcCCce
Confidence 1 112222333332 12 235668889766656778888888888777665
No 63
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=58.16 E-value=1.5e+02 Score=27.20 Aligned_cols=101 Identities=14% Similarity=0.158 Sum_probs=61.7
Q ss_pred ChHHHHHHHHHHHhhhCCCcEEEEE-eccCCCCCCCh--hHHHHHHHHHHHHHc-CcEeEEeecCCChHHHHHHHHHHHh
Q 017700 140 TPGQFVNACRASLARLQIEQIGIGQ-LHWSTANYAPP--QELALWNGLVAMYEK-GLVRAVGVSNYGPNQLVKIHDYLTA 215 (367)
Q Consensus 140 ~~~~i~~~l~~sL~~Lg~d~iDl~~-lH~~~~~~~~~--~~~~~~~~L~~l~~~-G~ir~iGvS~~~~~~l~~~~~~~~~ 215 (367)
+++.+.+..++.+ .-|.++||+-- --+|+...... +.+.+...++.+++. +. -+.+-++.++.++++++.
T Consensus 21 ~~~~~~~~a~~~~-~~GA~iIDIG~~st~p~~~~i~~~~E~~rl~~~v~~~~~~~~~--plsiDT~~~~vi~~al~~--- 94 (257)
T TIGR01496 21 SVDKAVAHAERML-EEGADIIDVGGESTRPGADRVSPEEELNRVVPVIKALRDQPDV--PISVDTYRAEVARAALEA--- 94 (257)
T ss_pred CHHHHHHHHHHHH-HCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCC--eEEEeCCCHHHHHHHHHc---
Confidence 5666666666554 56899999831 11232211111 112355666777766 54 488888999988888875
Q ss_pred cCCCceeEEeeecccccccchhhHHHHHHHcCCeEEEec
Q 017700 216 RGVPLCSAQVQFSLLSMGENQLEIKNICDSLGIRLISYS 254 (367)
Q Consensus 216 ~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~v~a~~ 254 (367)
|.+ .+|-+ +... ..++++.++++|..++.+.
T Consensus 95 -G~~-iINsi--s~~~----~~~~~~l~~~~~~~vV~m~ 125 (257)
T TIGR01496 95 -GAD-IINDV--SGGQ----DPAMLEVAAEYGVPLVLMH 125 (257)
T ss_pred -CCC-EEEEC--CCCC----CchhHHHHHHcCCcEEEEe
Confidence 333 23322 2221 2278899999999999864
No 64
>PRK05588 histidinol-phosphatase; Provisional
Probab=58.06 E-value=1.5e+02 Score=27.00 Aligned_cols=166 Identities=11% Similarity=0.203 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHHCCCCEEeCCCCcCCC-----CCCChHHHHHHHHHhhCCCCCCCCCcEEEEeeccCCCCCCChHHHHHH
Q 017700 73 SQLQQTFNLAVENGINLFDTADSYGTG-----RLNGKSEKLLGKFISEIPGQKQVQNNIVIATKFAAYPWRLTPGQFVNA 147 (367)
Q Consensus 73 ~~a~~~l~~A~~~Gi~~~DTA~~Yg~~-----~~~g~sE~~lG~al~~~~~~~~~R~~v~i~tK~~~~~~~~~~~~i~~~ 147 (367)
....+.++.|.+.|+..+ .+++...+ ...-.-+..+ +.++.++ ..+|.+---++. .++ ....
T Consensus 16 ~~~ee~v~~A~~~Gl~~~-~TdH~~~~~~~~~~~~~~~~~y~-~~i~~~~-----~~~I~~GiE~~~-----~~~-~~~~ 82 (255)
T PRK05588 16 MKIEEAIKKAKENNLGII-ITEHMDLNLPDKNKFCFDVDSYF-NKYSKYR-----NNKLLLGIELGM-----EKD-LIEE 82 (255)
T ss_pred cCHHHHHHHHHHcCCCEE-EeCCCCCCCCCccccccCHHHHH-HHHHHHh-----cCCcceEEEecc-----cCC-CHHH
Confidence 357789999999999999 76663210 0000122222 2223321 124544444432 222 3556
Q ss_pred HHHHHhhhCCCcEEEEEeccCCCCC-------C--Ch--hHHHHHHHHHHHHH-cCcEeEEe---ec----CC-------
Q 017700 148 CRASLARLQIEQIGIGQLHWSTANY-------A--PP--QELALWNGLVAMYE-KGLVRAVG---VS----NY------- 201 (367)
Q Consensus 148 l~~sL~~Lg~d~iDl~~lH~~~~~~-------~--~~--~~~~~~~~L~~l~~-~G~ir~iG---vS----~~------- 201 (367)
+++.|++...||+ +..+|+.+... . .. .....++.+.++.+ .|++.-+| +. .+
T Consensus 83 ~~~~l~~~~~D~v-igSvH~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~v~~~~~~dvlgH~Dl~~r~~~~~~~~~~~ 161 (255)
T PRK05588 83 NKELINKYEFDYV-IGSIHLVDKLDLYLDEFYKDKSKEEAYHIYFENMLKCLEKYDFIDSLGHIDYISRYAKYEDKEIYY 161 (255)
T ss_pred HHHHHhhCCCCeE-EEeEEeeCCCcchHHHHhcCCCHHHHHHHHHHHHHHHHHhcCCCCCccCHhHHHHcCccccccccH
Confidence 6778887888888 88999853110 0 10 11224467777776 46544443 21 00
Q ss_pred --ChHHHHHHHHHHHhcCCCceeEEeeeccc-ccccchhhHHHHHHHcCCeEEEe
Q 017700 202 --GPNQLVKIHDYLTARGVPLCSAQVQFSLL-SMGENQLEIKNICDSLGIRLISY 253 (367)
Q Consensus 202 --~~~~l~~~~~~~~~~~~~~~~~q~~~n~~-~~~~~~~~l~~~~~~~gi~v~a~ 253 (367)
-...++++++.+...+..+.+|--.+... ...+ ...+++.|++.|+.+++.
T Consensus 162 ~~~~~~~~~il~~~~~~g~~lEINt~~l~~~~~~~~-~~~~l~~~~~~g~~~i~l 215 (255)
T PRK05588 162 DEFKEIIDEILKVLIEKEKVLEINTRRLDDKRSVEN-LVKIYKRFYELGGKYITL 215 (255)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEECcccCCCCCCCC-HHHHHHHHHHcCCcEEEE
Confidence 12345667777777776666664222111 1111 125778888888775443
No 65
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=57.93 E-value=1.9e+02 Score=28.08 Aligned_cols=141 Identities=15% Similarity=0.114 Sum_probs=83.6
Q ss_pred CcceecccccCCCCcCCCCCCCHHHHHHHHHHHHHCC---CCEEeCCCCcCCCCCCChHHHHHHHHHhhCCCCCCCCCcE
Q 017700 50 SPMGFGTWAWGNQFLWGYQESMDSQLQQTFNLAVENG---INLFDTADSYGTGRLNGKSEKLLGKFISEIPGQKQVQNNI 126 (367)
Q Consensus 50 s~lglGt~~~g~~~~~g~~~~~~~~a~~~l~~A~~~G---i~~~DTA~~Yg~~~~~g~sE~~lG~al~~~~~~~~~R~~v 126 (367)
..+|-=|.++-..........++++..+++....+.- +-.+|..+..+. --..+-+.+. ...-+
T Consensus 28 ~~~C~RC~~l~hy~~~~~~~~~~e~f~~~l~~~~~~~~~Il~VvD~~d~~~s------~~~~l~~~~~-------~~pii 94 (360)
T TIGR03597 28 EVYCQRCFRLKHYNEIQDVELNDDDFLNLLNSLGDSNALIVYVVDIFDFEGS------LIPELKRFVG-------GNPVL 94 (360)
T ss_pred CeeecchhhhhccCccccCCCCHHHHHHHHhhcccCCcEEEEEEECcCCCCC------ccHHHHHHhC-------CCCEE
Confidence 3456566665333222234467778888777765432 235676555443 1122223221 24457
Q ss_pred EEEeeccCCCCCCChHHHHHHHHHHHhhhCCCcEEEEEeccCCCCCCChhHHHHHHHHHHHHHcCcEeEEeecCCChHHH
Q 017700 127 VIATKFAAYPWRLTPGQFVNACRASLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKGLVRAVGVSNYGPNQL 206 (367)
Q Consensus 127 ~i~tK~~~~~~~~~~~~i~~~l~~sL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~l 206 (367)
+|.+|+--.+.....+.+.+.+.+.++.+|....|++++-.- .....+++++.|.++++.+.|--+|.+|.+-..+
T Consensus 95 lV~NK~DLl~k~~~~~~~~~~l~~~~k~~g~~~~~i~~vSAk----~g~gv~eL~~~l~~~~~~~~v~~vG~~nvGKStl 170 (360)
T TIGR03597 95 LVGNKIDLLPKSVNLSKIKEWMKKRAKELGLKPVDIILVSAK----KGNGIDELLDKIKKARNKKDVYVVGVTNVGKSSL 170 (360)
T ss_pred EEEEchhhCCCCCCHHHHHHHHHHHHHHcCCCcCcEEEecCC----CCCCHHHHHHHHHHHhCCCeEEEECCCCCCHHHH
Confidence 899998533333345666666767777777654466655422 2333556888888887777899999999998775
Q ss_pred H
Q 017700 207 V 207 (367)
Q Consensus 207 ~ 207 (367)
-
T Consensus 171 i 171 (360)
T TIGR03597 171 I 171 (360)
T ss_pred H
Confidence 3
No 66
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=57.89 E-value=2.8e+02 Score=30.10 Aligned_cols=96 Identities=8% Similarity=0.012 Sum_probs=55.1
Q ss_pred ChHHHHHHHHHHHhhhCCCcEEEEEeccCCCCCCChhHHHHHHHHHHHHHc--CcEeEEeecCCChHHHHHHHHHHHhcC
Q 017700 140 TPGQFVNACRASLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEK--GLVRAVGVSNYGPNQLVKIHDYLTARG 217 (367)
Q Consensus 140 ~~~~i~~~l~~sL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~~~~L~~l~~~--G~ir~iGvS~~~~~~l~~~~~~~~~~~ 217 (367)
+.++|++-++...........-+|+|+..+ .+. .+.+++|.+..++ ..+++|-++|.....+..++.
T Consensus 100 gVDdIReLIe~a~~~P~~gr~KVIIIDEah----~LT-~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~TIrS------ 168 (830)
T PRK07003 100 GVDEMAALLERAVYAPVDARFKVYMIDEVH----MLT-NHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLS------ 168 (830)
T ss_pred cHHHHHHHHHHHHhccccCCceEEEEeChh----hCC-HHHHHHHHHHHHhcCCCeEEEEEECChhhccchhhh------
Confidence 456677766655433333455788888552 221 2356777766666 589999998864433333333
Q ss_pred CCceeEEeeecccccccchhhHHHHHHHcCCe
Q 017700 218 VPLCSAQVQFSLLSMGENQLEIKNICDSLGIR 249 (367)
Q Consensus 218 ~~~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~ 249 (367)
.|.++.|..+....-...+...|.+.||.
T Consensus 169 ---RCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~ 197 (830)
T PRK07003 169 ---RCLQFNLKQMPAGHIVSHLERILGEERIA 197 (830)
T ss_pred ---heEEEecCCcCHHHHHHHHHHHHHHcCCC
Confidence 35667777765433332444556655653
No 67
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=57.56 E-value=1.4e+02 Score=28.61 Aligned_cols=142 Identities=20% Similarity=0.149 Sum_probs=77.8
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEeCCCCcC---------CCC-CCCh----HHHHHHHHHhhCCCCCCCCCcEEEEeeccC
Q 017700 69 ESMDSQLQQTFNLAVENGINLFDTADSYG---------TGR-LNGK----SEKLLGKFISEIPGQKQVQNNIVIATKFAA 134 (367)
Q Consensus 69 ~~~~~~a~~~l~~A~~~Gi~~~DTA~~Yg---------~~~-~~g~----sE~~lG~al~~~~~~~~~R~~v~i~tK~~~ 134 (367)
.++.++...+.+++-+.|+.+|=|.-.-. ..- --|. .-.+|-. +.+ ....|+|+|-..
T Consensus 72 ~l~~e~~~~L~~~~~~~Gi~~~stpfd~~svd~l~~~~v~~~KIaS~~~~n~pLL~~-~A~------~gkPvilStGma- 143 (329)
T TIGR03569 72 ELSEEDHRELKEYCESKGIEFLSTPFDLESADFLEDLGVPRFKIPSGEITNAPLLKK-IAR------FGKPVILSTGMA- 143 (329)
T ss_pred CCCHHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHhcCCCEEEECcccccCHHHHHH-HHh------cCCcEEEECCCC-
Confidence 35678889999999999998885432211 000 0000 0111111 111 223455555542
Q ss_pred CCCCCChHHHHHHHHHHHhhhCCCcEEEEEeccCCCCCCChhHHHHHHHHHHHHHcCcEeEEeecCCChHHHHHHHHHHH
Q 017700 135 YPWRLTPGQFVNACRASLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKGLVRAVGVSNYGPNQLVKIHDYLT 214 (367)
Q Consensus 135 ~~~~~~~~~i~~~l~~sL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~ 214 (367)
+.++|..+++...+. |.+.-|+.+||+......+.. +--+.++..|++.=. .-||+|.|+......+...
T Consensus 144 -----tl~Ei~~Av~~i~~~-G~~~~~i~llhC~s~YP~~~~-~~nL~~I~~Lk~~f~-~pVG~SdHt~G~~~~~aAv-- 213 (329)
T TIGR03569 144 -----TLEEIEAAVGVLRDA-GTPDSNITLLHCTTEYPAPFE-DVNLNAMDTLKEAFD-LPVGYSDHTLGIEAPIAAV-- 213 (329)
T ss_pred -----CHHHHHHHHHHHHHc-CCCcCcEEEEEECCCCCCCcc-cCCHHHHHHHHHHhC-CCEEECCCCccHHHHHHHH--
Confidence 788999999887543 432226899998743222221 113566666666433 4799999987653333332
Q ss_pred hcCCCceeEEeeeccc
Q 017700 215 ARGVPLCSAQVQFSLL 230 (367)
Q Consensus 215 ~~~~~~~~~q~~~n~~ 230 (367)
..|. .+++-++++-
T Consensus 214 alGA--~iIEkH~tld 227 (329)
T TIGR03569 214 ALGA--TVIEKHFTLD 227 (329)
T ss_pred HcCC--CEEEeCCChh
Confidence 2232 3667777653
No 68
>TIGR00216 ispH_lytB (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming). Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response.
Probab=56.58 E-value=67 Score=30.05 Aligned_cols=120 Identities=18% Similarity=0.173 Sum_probs=74.0
Q ss_pred HHHHHHHcCcEeEEeecCCChHHHHHHHHHHHhcCCCceeEEeeeccccccc-chhhHHHHHHHcCCeEEEecCCCCccc
Q 017700 183 GLVAMYEKGLVRAVGVSNYGPNQLVKIHDYLTARGVPLCSAQVQFSLLSMGE-NQLEIKNICDSLGIRLISYSPLGLGML 261 (367)
Q Consensus 183 ~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~-~~~~l~~~~~~~gi~v~a~~pl~~G~L 261 (367)
.++.|....++-.+-=++.+.+.+..+.+.++... +..-..+.-++++... .+..+.+.+++-++-++..+.=.+.
T Consensus 146 d~~~l~~~~~v~vvsQTT~~~~~~~~i~~~l~~~~-~~~~~~~~nTIC~AT~~RQ~a~~~la~~vD~miVVGg~nSsN-- 222 (280)
T TIGR00216 146 DLENFKVEDLLGVVSQTTLSQEDTKEIVAELKARV-PQKEVPVFNTICYATQNRQDAVKELAPEVDLMIVIGGKNSSN-- 222 (280)
T ss_pred HHHhCCCCCcEEEEEcCCCcHHHHHHHHHHHHHhC-CCcCCCCCCCcccccHHHHHHHHHHHhhCCEEEEECCCCCch--
Confidence 34444434555555555566777777777765432 1111122223333222 2346788888888777664332221
Q ss_pred cCCCCCCCCCCChhhhhhhhhccChHHHHHHHHHHHHHhC------CCHHHHHHHHHHcCCC-eeecCCCCHHHHHHHH
Q 017700 262 TGKYTPSKLPRGPRALLFRQILPGLKPLLRSLKEIAERRG------KTIPQVAINWCICKGT-IPIPGVKSVKQVEENL 333 (367)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~g------~t~~qlal~~~l~~~~-~vi~g~~~~e~l~enl 333 (367)
-.+|.++|+++| -++.++-..|+-.... .+..|+|+|+.+-+.+
T Consensus 223 ----------------------------T~rL~ei~~~~~~~t~~Ie~~~el~~~~l~~~~~VGiTAGASTP~~li~eV 273 (280)
T TIGR00216 223 ----------------------------TTRLYEIAEEHGPPSYLIETAEELPEEWLKGVKVVGITAGASTPDWIIEEV 273 (280)
T ss_pred ----------------------------HHHHHHHHHHhCCCEEEECChHHCCHHHhCCCCEEEEEecCCCCHHHHHHH
Confidence 068889999887 4789999999977665 7899999999876654
No 69
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=56.35 E-value=54 Score=29.39 Aligned_cols=72 Identities=17% Similarity=0.078 Sum_probs=51.5
Q ss_pred CCChHHHHHHHHHHHhhhC--------------------------CCcEEEEEeccCCCCCCChhHHHHHHHHHHHHHcC
Q 017700 138 RLTPGQFVNACRASLARLQ--------------------------IEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKG 191 (367)
Q Consensus 138 ~~~~~~i~~~l~~sL~~Lg--------------------------~d~iDl~~lH~~~~~~~~~~~~~~~~~L~~l~~~G 191 (367)
+++..++++.+++.-++|+ +...+++.+..|....+-.....+.+.+.+++++|
T Consensus 104 ~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~eg 183 (245)
T COG4555 104 GLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEG 183 (245)
T ss_pred hhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCC
Confidence 3467778888888888877 34567777777654433334556788999999999
Q ss_pred cEeEEeecCCChHHHHHHHH
Q 017700 192 LVRAVGVSNYGPNQLVKIHD 211 (367)
Q Consensus 192 ~ir~iGvS~~~~~~l~~~~~ 211 (367)
+ .+=+|+|..++++++.+
T Consensus 184 r--~viFSSH~m~EvealCD 201 (245)
T COG4555 184 R--AVIFSSHIMQEVEALCD 201 (245)
T ss_pred c--EEEEecccHHHHHHhhh
Confidence 8 67788888777766654
No 70
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=56.25 E-value=1.2e+02 Score=28.64 Aligned_cols=118 Identities=14% Similarity=0.105 Sum_probs=70.3
Q ss_pred CCChHHHHHHHHHHHhhhCCCcEEEEEeccCCCCCCChhHHHHHHHHHHHHH--cCcE-eEEeecCCChHHHHHHHHHHH
Q 017700 138 RLTPGQFVNACRASLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYE--KGLV-RAVGVSNYGPNQLVKIHDYLT 214 (367)
Q Consensus 138 ~~~~~~i~~~l~~sL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~~~~L~~l~~--~G~i-r~iGvS~~~~~~l~~~~~~~~ 214 (367)
..+.+.+++-++..++ .-+|-+++-.-..+...+..+|-.+.++..++ .|+| --.|++..+.....++.+.++
T Consensus 21 ~vD~~a~~~lv~~li~----~Gv~gi~~~GttGE~~~Ls~eEr~~v~~~~v~~~~grvpviaG~g~~~t~eai~lak~a~ 96 (299)
T COG0329 21 SVDEEALRRLVEFLIA----AGVDGLVVLGTTGESPTLTLEERKEVLEAVVEAVGGRVPVIAGVGSNSTAEAIELAKHAE 96 (299)
T ss_pred CcCHHHHHHHHHHHHH----cCCCEEEECCCCccchhcCHHHHHHHHHHHHHHHCCCCcEEEecCCCcHHHHHHHHHHHH
Confidence 3456655555554443 23554555543333333344455566666666 5665 567888887777777888888
Q ss_pred hcCCC-ceeEEeeecccccccchhhHHHHHHHcCCeEEEec-CCCCc
Q 017700 215 ARGVP-LCSAQVQFSLLSMGENQLEIKNICDSLGIRLISYS-PLGLG 259 (367)
Q Consensus 215 ~~~~~-~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~v~a~~-pl~~G 259 (367)
+.|.+ +.++-..|+...+...-..+...+..-+++++.|. |...|
T Consensus 97 ~~Gad~il~v~PyY~k~~~~gl~~hf~~ia~a~~lPvilYN~P~~tg 143 (299)
T COG0329 97 KLGADGILVVPPYYNKPSQEGLYAHFKAIAEAVDLPVILYNIPSRTG 143 (299)
T ss_pred hcCCCEEEEeCCCCcCCChHHHHHHHHHHHHhcCCCEEEEeCccccC
Confidence 88876 55555555555432222345556666799999996 55544
No 71
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=56.05 E-value=1.5e+02 Score=26.47 Aligned_cols=102 Identities=12% Similarity=0.148 Sum_probs=60.3
Q ss_pred ChHHHHHHHHHHHhhhCCCcEEEEEeccCCCCCCChhHHHHHHHHHHHHHcCcEeEEeecCCChHHHHHHHHHHHhcCCC
Q 017700 140 TPGQFVNACRASLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKGLVRAVGVSNYGPNQLVKIHDYLTARGVP 219 (367)
Q Consensus 140 ~~~~i~~~l~~sL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~ 219 (367)
+.+ .+..+-+.|.++|+++|++- .+ . ......+.++.+.+.... .+-.++.......++...+.++..+.+
T Consensus 12 ~~~-~k~~i~~~L~~~Gv~~iEvg---~~--~-~~~~~~~~v~~~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~g~~ 82 (237)
T PF00682_consen 12 STE-EKLEIAKALDEAGVDYIEVG---FP--F-ASEDDFEQVRRLREALPN--ARLQALCRANEEDIERAVEAAKEAGID 82 (237)
T ss_dssp -HH-HHHHHHHHHHHHTTSEEEEE---HC--T-SSHHHHHHHHHHHHHHHS--SEEEEEEESCHHHHHHHHHHHHHTTSS
T ss_pred CHH-HHHHHHHHHHHhCCCEEEEc---cc--c-cCHHHHHHhhhhhhhhcc--cccceeeeehHHHHHHHHHhhHhccCC
Confidence 444 44455556999999999987 22 1 122233345556555566 444456666777788867766665555
Q ss_pred ceeEEeeeccccccc-----------chhhHHHHHHHcCCeE
Q 017700 220 LCSAQVQFSLLSMGE-----------NQLEIKNICDSLGIRL 250 (367)
Q Consensus 220 ~~~~q~~~n~~~~~~-----------~~~~l~~~~~~~gi~v 250 (367)
...+-...|...... .-...+.+++++|+.+
T Consensus 83 ~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v 124 (237)
T PF00682_consen 83 IIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEV 124 (237)
T ss_dssp EEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEE
T ss_pred EEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCce
Confidence 444444444411110 1136789999999999
No 72
>PRK14476 nitrogenase molybdenum-cofactor biosynthesis protein NifN; Provisional
Probab=55.90 E-value=2e+02 Score=28.86 Aligned_cols=117 Identities=15% Similarity=0.083 Sum_probs=57.5
Q ss_pred CCCcCCCCCCChHHHHHHHHHhhCCCCCCCCCcEEEEeeccCCCCCCChHHHHHHHHHHHhhhC-CCcEEEEEeccCCCC
Q 017700 93 ADSYGTGRLNGKSEKLLGKFISEIPGQKQVQNNIVIATKFAAYPWRLTPGQFVNACRASLARLQ-IEQIGIGQLHWSTAN 171 (367)
Q Consensus 93 A~~Yg~~~~~g~sE~~lG~al~~~~~~~~~R~~v~i~tK~~~~~~~~~~~~i~~~l~~sL~~Lg-~d~iDl~~lH~~~~~ 171 (367)
.-.||. |+-|-++|+..-+ ....+=|+|.|-+-+. .--+++..-+++.-++.. ...+.++.++.|+..
T Consensus 71 d~VfGg-------~~~L~~aI~~~~~-~~~P~~I~V~ttC~~e---iIGDDi~~v~~~~~~~~p~~~~~pvi~v~tpgF~ 139 (455)
T PRK14476 71 TTILGG-------DENVEEAILNICK-KAKPKIIGLCTTGLTE---TRGDDVAGALKEIRARHPELADTPIVYVSTPDFK 139 (455)
T ss_pred ceEeCC-------HHHHHHHHHHHHH-hhCCCEEEEeCcchHh---hhhccHHHHHHHHHhhccccCCCeEEEecCCCCC
Confidence 347786 6777777765421 0122345566655221 112223322222222211 113578888887532
Q ss_pred CC-ChhHHHHHHHHHH-HH--------HcCcEeEEeecCCChHHHHHHHHHHHhcCCCc
Q 017700 172 YA-PPQELALWNGLVA-MY--------EKGLVRAVGVSNYGPNQLVKIHDYLTARGVPL 220 (367)
Q Consensus 172 ~~-~~~~~~~~~~L~~-l~--------~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~ 220 (367)
.. ....+.++.+|.+ +. ++++|.=||-+++.+..++++.+..+..|+.+
T Consensus 140 g~~~~G~~~a~~al~~~~~~~~~~~~~~~~~VNiIgg~~~~~~D~~elk~lL~~~Gl~v 198 (455)
T PRK14476 140 GALEDGWAAAVEAIVEALVPPASSTGRRPRQVNVLPGSHLTPGDIEELREIIEAFGLEP 198 (455)
T ss_pred CcHHHHHHHHHHHHHHHhcccccCCCCCCCcEEEECCCCCCcccHHHHHHHHHHcCCce
Confidence 21 1112223333322 22 34568888766665666778888777777654
No 73
>PRK14464 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=55.81 E-value=2e+02 Score=27.81 Aligned_cols=82 Identities=11% Similarity=0.033 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHH-cCc---EeEEee--cCCChHHHHHHHHHHHhcCCCceeEEeeeccccccc----ch---hhHHHHH
Q 017700 177 ELALWNGLVAMYE-KGL---VRAVGV--SNYGPNQLVKIHDYLTARGVPLCSAQVQFSLLSMGE----NQ---LEIKNIC 243 (367)
Q Consensus 177 ~~~~~~~L~~l~~-~G~---ir~iGv--S~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~----~~---~~l~~~~ 243 (367)
..++.+++.++.+ .|+ +.++=+ -|.+.+++.++.+.++ +.+..++-++||+..... .. ..+.+..
T Consensus 225 l~el~~a~~~~~~~~grri~~EyvLl~GVNDs~e~a~~L~~~l~--~~~~~vNLIPyN~v~g~~~~rp~~~~i~~f~~~L 302 (344)
T PRK14464 225 PEELVELGEAYARATGYPIQYQWTLLEGVNDSDEEMDGIVRLLK--GKYAVMNLIPYNSVDGDAYRRPSGERIVAMARYL 302 (344)
T ss_pred HHHHHHHHHHHHHHHCCEEEEEEEEeCCCCCCHHHHHHHHHHHh--ccccccceecCCccCCCCccCCCHHHHHHHHHHH
Confidence 4556777766544 353 234422 2567888888888765 356778899999864321 11 3567778
Q ss_pred HHcCCeEEEecCCCCcc
Q 017700 244 DSLGIRLISYSPLGLGM 260 (367)
Q Consensus 244 ~~~gi~v~a~~pl~~G~ 260 (367)
+++||.+......|.-+
T Consensus 303 ~~~gi~~tiR~~~G~di 319 (344)
T PRK14464 303 HRRGVLTKVRNSAGQDV 319 (344)
T ss_pred HHCCceEEEECCCCCch
Confidence 88999999888776543
No 74
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=55.54 E-value=1.9e+02 Score=29.31 Aligned_cols=22 Identities=5% Similarity=-0.139 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHcCcEeEEeec
Q 017700 178 LALWNGLVAMYEKGLVRAVGVS 199 (367)
Q Consensus 178 ~~~~~~L~~l~~~G~ir~iGvS 199 (367)
+.+++.++.|+++.-|+.+-+.
T Consensus 225 e~Vv~Ei~~l~~~~gv~~~~~~ 246 (497)
T TIGR02026 225 KKFVDEIEWLVRTHGVGFFILA 246 (497)
T ss_pred HHHHHHHHHHHHHcCCCEEEEE
Confidence 3456666666654445555443
No 75
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=55.39 E-value=1e+02 Score=26.98 Aligned_cols=151 Identities=9% Similarity=0.052 Sum_probs=80.7
Q ss_pred CCHHHHHHHHHHHHHCCCCEEeCCCCcCCCCCCChHHHHHHHHHhhCCCCCCCCCcEEEEeeccCCCCCCChHHHHHHHH
Q 017700 70 SMDSQLQQTFNLAVENGINLFDTADSYGTGRLNGKSEKLLGKFISEIPGQKQVQNNIVIATKFAAYPWRLTPGQFVNACR 149 (367)
Q Consensus 70 ~~~~~a~~~l~~A~~~Gi~~~DTA~~Yg~~~~~g~sE~~lG~al~~~~~~~~~R~~v~i~tK~~~~~~~~~~~~i~~~l~ 149 (367)
.+.+++.++++.+++.|+...|. | +..+..+++...+ ...++++++.-=. +..+.+++.++
T Consensus 9 ~d~~~~~~~v~~~l~~g~~~~~i---~---------~~~l~p~m~~iG~-~w~~gei~va~~~------~a~~~~~~~l~ 69 (197)
T TIGR02370 9 GEEDDVVEGAQKALDAGIDPIEL---I---------EKGLMAGMGVVGK-LFEDGELFLPHVM------MSADAMLAGIK 69 (197)
T ss_pred cCHHHHHHHHHHHHHcCCCHHHH---H---------HHHHHHHHHHHHH-HHcCCCccHHHHH------HHHHHHHHHHH
Confidence 35689999999999999876552 2 3333344333211 0134455542211 12334555555
Q ss_pred HHHhhhCCC----cEEEEEeccCCCCCCChhHHHHHHHHHHHHHcCc-EeEEeecCCChHHHHHHHHHHHhcCCCceeEE
Q 017700 150 ASLARLQIE----QIGIGQLHWSTANYAPPQELALWNGLVAMYEKGL-VRAVGVSNYGPNQLVKIHDYLTARGVPLCSAQ 224 (367)
Q Consensus 150 ~sL~~Lg~d----~iDl~~lH~~~~~~~~~~~~~~~~~L~~l~~~G~-ir~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q 224 (367)
.....+..+ .---+++-.+..+... -+..-.-.-|+..|. |.++|... +.+.+.+.... ..++++.
T Consensus 70 ~l~~~~~~~~~~~~~~~vv~~t~~gd~H~---lG~~~v~~~l~~~G~~vi~LG~~v-p~e~~v~~~~~-----~~pd~v~ 140 (197)
T TIGR02370 70 VLTPEMEKAVETEVLGKVVCGVAEGDVHD---IGKNIVVTMLRANGFDVIDLGRDV-PIDTVVEKVKK-----EKPLMLT 140 (197)
T ss_pred HHHHHhhccccCCCCCeEEEEeCCCchhH---HHHHHHHHHHHhCCcEEEECCCCC-CHHHHHHHHHH-----cCCCEEE
Confidence 544444321 1112333333222222 233444456677886 78888644 55555444443 5677777
Q ss_pred eeecccccccchhhHHHHHHHcCC
Q 017700 225 VQFSLLSMGENQLEIKNICDSLGI 248 (367)
Q Consensus 225 ~~~n~~~~~~~~~~l~~~~~~~gi 248 (367)
+.++.-.....-.++++.+++.|.
T Consensus 141 lS~~~~~~~~~~~~~i~~l~~~~~ 164 (197)
T TIGR02370 141 GSALMTTTMYGQKDINDKLKEEGY 164 (197)
T ss_pred EccccccCHHHHHHHHHHHHHcCC
Confidence 776655443444578888898854
No 76
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=55.23 E-value=1.9e+02 Score=27.61 Aligned_cols=91 Identities=16% Similarity=0.130 Sum_probs=61.8
Q ss_pred CCCCcEEEEeeccCCCCCCChHHHHHHHHHHHhhhCCCcEEEEEeccCCCCCCChhHHHHHHHHHHHHHcCcEeEEeecC
Q 017700 121 QVQNNIVIATKFAAYPWRLTPGQFVNACRASLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKGLVRAVGVSN 200 (367)
Q Consensus 121 ~~R~~v~i~tK~~~~~~~~~~~~i~~~l~~sL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvS~ 200 (367)
..++.+.++.|....++ ...+.+.+++..+.+|. ++.+ ..+. . .. .....+.++.+..+| +..|-++.
T Consensus 21 ~~~~~i~~v~k~~~~pf---~~~~~~Gi~~aa~~~G~---~v~~-~~~~-~-~d--~~~q~~~i~~li~~~-vdgIiv~~ 88 (336)
T PRK15408 21 QAAERIAFIPKLVGVGF---FTSGGNGAKEAGKELGV---DVTY-DGPT-E-PS--VSGQVQLINNFVNQG-YNAIIVSA 88 (336)
T ss_pred cCCcEEEEEECCCCCHH---HHHHHHHHHHHHHHhCC---EEEE-ECCC-C-CC--HHHHHHHHHHHHHcC-CCEEEEec
Confidence 35678989999765443 55778889999999984 4443 2232 1 11 223457888888876 78888888
Q ss_pred CChHHHHHHHHHHHhcCCCceeE
Q 017700 201 YGPNQLVKIHDYLTARGVPLCSA 223 (367)
Q Consensus 201 ~~~~~l~~~~~~~~~~~~~~~~~ 223 (367)
.+...+...++.+...++|+..+
T Consensus 89 ~d~~al~~~l~~a~~~gIpVV~~ 111 (336)
T PRK15408 89 VSPDGLCPALKRAMQRGVKVLTW 111 (336)
T ss_pred CCHHHHHHHHHHHHHCCCeEEEe
Confidence 77777777777777777775444
No 77
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=55.16 E-value=3.2e+02 Score=29.90 Aligned_cols=97 Identities=9% Similarity=0.067 Sum_probs=56.0
Q ss_pred ChHHHHHHHHHHHhhhCCCcEEEEEeccCCCCCCChhHHHHHHHHHHHHHc--CcEeEEeecCCChHHHHHHHHHHHhcC
Q 017700 140 TPGQFVNACRASLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEK--GLVRAVGVSNYGPNQLVKIHDYLTARG 217 (367)
Q Consensus 140 ~~~~i~~~l~~sL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~~~~L~~l~~~--G~ir~iGvS~~~~~~l~~~~~~~~~~~ 217 (367)
+.+.|++-.++....--....-+|+|+..+ .+. .+..++|.+..++ ..+..|-+++.. +. ++...++
T Consensus 101 ~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad----~lt-~~a~NaLLK~LEEpP~~~~fIl~tt~~-~k---Ll~TIrS-- 169 (824)
T PRK07764 101 GVDDARELRERAFFAPAESRYKIFIIDEAH----MVT-PQGFNALLKIVEEPPEHLKFIFATTEP-DK---VIGTIRS-- 169 (824)
T ss_pred CHHHHHHHHHHHHhchhcCCceEEEEechh----hcC-HHHHHHHHHHHhCCCCCeEEEEEeCCh-hh---hhHHHHh--
Confidence 567777655544333333466788898552 222 3467888888887 889999887533 22 3332221
Q ss_pred CCceeEEeeecccccccchhhHHHHHHHcCCeE
Q 017700 218 VPLCSAQVQFSLLSMGENQLEIKNICDSLGIRL 250 (367)
Q Consensus 218 ~~~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~v 250 (367)
.+..+.|..+....-..-+...|++.|+.+
T Consensus 170 ---Rc~~v~F~~l~~~~l~~~L~~il~~EGv~i 199 (824)
T PRK07764 170 ---RTHHYPFRLVPPEVMRGYLERICAQEGVPV 199 (824)
T ss_pred ---heeEEEeeCCCHHHHHHHHHHHHHHcCCCC
Confidence 245667777654333324555666667643
No 78
>COG1140 NarY Nitrate reductase beta subunit [Energy production and conversion]
Probab=54.87 E-value=5.9 Score=38.17 Aligned_cols=55 Identities=15% Similarity=0.129 Sum_probs=34.3
Q ss_pred cCcEeEEeecCCChHHHHHHHHHHHhcCCCceeEEeeecccccccchhhHHHHHHHcCCe
Q 017700 190 KGLVRAVGVSNYGPNQLVKIHDYLTARGVPLCSAQVQFSLLSMGENQLEIKNICDSLGIR 249 (367)
Q Consensus 190 ~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~ 249 (367)
-|+|||+||--++++.+.++...-+ .-++.+.+..++-.... ..+++.|++.||+
T Consensus 263 VGriRYlGVlLYDaDrv~eaAs~~~----e~dly~~Q~~ifLDP~D-P~Vi~~A~k~Gip 317 (513)
T COG1140 263 VGRIRYLGVLLYDADRVEEAASTEN----EKDLYERQLDVFLDPHD-PAVIEQARKDGIP 317 (513)
T ss_pred hcceeeeeeeeecHHHHHHhhcCcc----HHHHHHHHHhhhcCCCC-HHHHHHHHHcCCc
Confidence 3899999999999988877655411 12333333344322222 2678888888876
No 79
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=54.44 E-value=37 Score=30.21 Aligned_cols=81 Identities=27% Similarity=0.259 Sum_probs=45.7
Q ss_pred eeccCCCCCCChHHHHHHHHHHHhhhCCCcEEEEEeccCCCCCCChhHHHHHHHHHHHHHcCcEeEEeec-CCChHHHHH
Q 017700 130 TKFAAYPWRLTPGQFVNACRASLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKGLVRAVGVS-NYGPNQLVK 208 (367)
Q Consensus 130 tK~~~~~~~~~~~~i~~~l~~sL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvS-~~~~~~l~~ 208 (367)
-|++.-. +.++++.+ ..+|.|++=+++.... ..+.. .+ ....+.... .+.++.+||. +-+.+.+.+
T Consensus 5 vKICGi~---~~eda~~~-----~~~Gad~iGfI~~~~S-~R~V~--~~-~a~~i~~~~-~~~i~~VgVf~~~~~~~i~~ 71 (210)
T PRK01222 5 VKICGIT---TPEDAEAA-----AELGADAIGFVFYPKS-PRYVS--PE-QAAELAAAL-PPFVKVVGVFVNASDEEIDE 71 (210)
T ss_pred EEECCCC---cHHHHHHH-----HHcCCCEEEEccCCCC-CCcCC--HH-HHHHHHHhC-CCCCCEEEEEeCCCHHHHHH
Confidence 4665431 45555444 4589999998744422 12222 21 122222221 3568899986 446666666
Q ss_pred HHHHHHhcCCCceeEEeeec
Q 017700 209 IHDYLTARGVPLCSAQVQFS 228 (367)
Q Consensus 209 ~~~~~~~~~~~~~~~q~~~n 228 (367)
+.+. ..++++|++-+
T Consensus 72 ~~~~-----~~~d~vQLHg~ 86 (210)
T PRK01222 72 IVET-----VPLDLLQLHGD 86 (210)
T ss_pred HHHh-----cCCCEEEECCC
Confidence 6554 67899999764
No 80
>KOG1321 consensus Protoheme ferro-lyase (ferrochelatase) [Coenzyme transport and metabolism]
Probab=53.87 E-value=2.1e+02 Score=27.39 Aligned_cols=152 Identities=16% Similarity=0.176 Sum_probs=93.0
Q ss_pred HHHHHHHHcCcEeEEeecCCCh-------HHHHHHHHHHHhcCCCceeEEeeecccccccchhhHHHHHHHc--------
Q 017700 182 NGLVAMYEKGLVRAVGVSNYGP-------NQLVKIHDYLTARGVPLCSAQVQFSLLSMGENQLEIKNICDSL-------- 246 (367)
Q Consensus 182 ~~L~~l~~~G~ir~iGvS~~~~-------~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~~-------- 246 (367)
++++++++.|.-|.+-+|-+.. ..+..+.+..+..+... -+.++++++.+.+..++....++
T Consensus 144 ea~~qikkd~v~r~VafsqYPQyS~sTsGSSln~l~r~~r~~~~~~---~~~wsiIdrW~t~~glIkafA~~I~keL~~F 220 (395)
T KOG1321|consen 144 EALEQIKKDGVTRAVAFSQYPQYSCSTSGSSLNELWRQFREDGYER---DIKWSIIDRWPTREGLIKAFAENIEKELQTF 220 (395)
T ss_pred HHHHHHHhcCceeEEeeccCCceeeecCcccHHHHHHHHHhcCccc---CCceEeeccccccchHHHHHHHHHHHHHHhc
Confidence 7899999999999999987653 34666666665555433 36788999988776666555433
Q ss_pred -----CCeEEEecCCCCccccCCCCCCCCCCChhhhhhhhh-ccChHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCCeee
Q 017700 247 -----GIRLISYSPLGLGMLTGKYTPSKLPRGPRALLFRQI-LPGLKPLLRSLKEIAERRGKTIPQVAINWCICKGTIPI 320 (367)
Q Consensus 247 -----gi~v~a~~pl~~G~L~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~la~~~g~t~~qlal~~~l~~~~~vi 320 (367)
+-.||-++.-+--. . +-+. .+...++.+.+..+.++.+.. ...-|+|--.-|..+.
T Consensus 221 ~~~~r~~VVIlFSAHslPm--s---------------~Vn~GDpY~~Ei~atv~~iMeeL~~~-N~y~lawQSkVGP~pW 282 (395)
T KOG1321|consen 221 PEPVRDDVVILFSAHSLPM--S---------------VVNAGDPYPAEIAATVDLIMEELKYK-NPYRLAWQSKVGPLPW 282 (395)
T ss_pred CCcccccEEEEEecCCCcH--H---------------HHhcCCCcHHHHHHHHHHHHHHhccC-CcchhhhhcccCCccc
Confidence 33345454433210 0 0001 122334556777777777643 3345666555566788
Q ss_pred cCCCCHHHHHHHHhccC-------CCCCHHHHHHHHHHHhh
Q 017700 321 PGVKSVKQVEENLGALG-------WRLSSDELLELEYAALE 354 (367)
Q Consensus 321 ~g~~~~e~l~enl~a~~-------~~L~~e~~~~l~~~~~~ 354 (367)
.|.-+.|-+++..+--. +.++.|.++.|.++.-+
T Consensus 283 L~p~Tde~i~~lgk~g~knll~VPIaFvSeHIETL~EiD~e 323 (395)
T KOG1321|consen 283 LGPATDEVIEGLGKKGVKNLLLVPIAFVSEHIETLHEIDIE 323 (395)
T ss_pred cccchHHHHHHHHhhcccceEEEeehhhhHHHHHHHHhhHH
Confidence 88888877777654332 24567777776666543
No 81
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=52.91 E-value=54 Score=29.83 Aligned_cols=116 Identities=14% Similarity=0.108 Sum_probs=63.0
Q ss_pred CcceecccccCCCCcCCCCCCCHHHHHHHHHHHH-HCCCCEEeCCCCcCCCCCCChHHHHHHHHHhhCCCCCCCCCcEEE
Q 017700 50 SPMGFGTWAWGNQFLWGYQESMDSQLQQTFNLAV-ENGINLFDTADSYGTGRLNGKSEKLLGKFISEIPGQKQVQNNIVI 128 (367)
Q Consensus 50 s~lglGt~~~g~~~~~g~~~~~~~~a~~~l~~A~-~~Gi~~~DTA~~Yg~~~~~g~sE~~lG~al~~~~~~~~~R~~v~i 128 (367)
|+|-+||..+.+. +++..|+ .+|-..+=+|----+ -... .-+.-+-++ ++++++.+
T Consensus 9 SRL~lGTgky~s~--------------~~m~~ai~aSg~evvTvalRR~~----~~~~-~~~~~~~~~----i~~~~~~l 65 (247)
T PF05690_consen 9 SRLILGTGKYPSP--------------EVMREAIEASGAEVVTVALRRVN----LGSK-PGGDNILDY----IDRSGYTL 65 (247)
T ss_dssp -SEEEE-STSSSH--------------HHHHHHHHHTT-SEEEEECCGST----TTS--TTCHHCCCC----TTCCTSEE
T ss_pred cceEEecCCCCCH--------------HHHHHHHHHhCCcEEEEEEeccc----CCCC-CCCccHHHH----hcccCCEE
Confidence 7899999987643 5566666 457777655432211 0000 001112222 34556654
Q ss_pred Eeec-cCCCCCCChHHHHHHHHHHHhhhCCCcEEEEEeccCCCCCCChhHHHHHHHHHHHHHcCcEe
Q 017700 129 ATKF-AAYPWRLTPGQFVNACRASLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKGLVR 194 (367)
Q Consensus 129 ~tK~-~~~~~~~~~~~i~~~l~~sL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~~~~L~~l~~~G~ir 194 (367)
.-.. |. .+.++..+..+-..+.+++++|-|=.+..+ .+.--+..+++++-+.|+++|-+-
T Consensus 66 LPNTaGc----~tA~EAv~~A~laRe~~~t~wIKLEVi~D~--~~L~PD~~etl~Aae~Lv~eGF~V 126 (247)
T PF05690_consen 66 LPNTAGC----RTAEEAVRTARLAREAFGTNWIKLEVIGDD--KTLLPDPIETLKAAEILVKEGFVV 126 (247)
T ss_dssp EEE-TT-----SSHHHHHHHHHHHHHTTS-SEEEE--BS-T--TT--B-HHHHHHHHHHHHHTT-EE
T ss_pred CCcCCCC----CCHHHHHHHHHHHHHHcCCCeEEEEEeCCC--CCcCCChhHHHHHHHHHHHCCCEE
Confidence 4333 32 278888888899999999999987665532 221114456899999999999753
No 82
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=52.80 E-value=87 Score=28.53 Aligned_cols=198 Identities=11% Similarity=0.056 Sum_probs=102.5
Q ss_pred HHHHHHHHhhhCCCcEEEEEeccCCCCCCChhHHHHHHHHHHHHHcCcEeEEeecCC------ChHHHHHHHHHHHhcCC
Q 017700 145 VNACRASLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKGLVRAVGVSNY------GPNQLVKIHDYLTARGV 218 (367)
Q Consensus 145 ~~~l~~sL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvS~~------~~~~l~~~~~~~~~~~~ 218 (367)
.+.+++.|+-.| +|||.+-+-|-.....+. +-+-+.++-+++-|.--+.| ++ ....+++.++.|+..|+
T Consensus 11 ~~~~~d~Le~~g-~yID~lKfg~Gt~~l~~~--~~l~eki~la~~~~V~v~~G--Gtl~E~~~~q~~~~~Yl~~~k~lGf 85 (237)
T TIGR03849 11 PKFVEDYLKVCG-DYITFVKFGWGTSALIDR--DIVKEKIEMYKDYGIKVYPG--GTLFEIAHSKGKFDEYLNECDELGF 85 (237)
T ss_pred HHHHHHHHHHhh-hheeeEEecCceEeeccH--HHHHHHHHHHHHcCCeEeCC--ccHHHHHHHhhhHHHHHHHHHHcCC
Confidence 467788888888 699999999864332221 22344555566677766666 21 12346666777877654
Q ss_pred CceeEEeeecccccccc-hhhHHHHHHHcCCeEEEecCCCCccccCCCCCCCCCCChhhhhhhhh---ccChH-HHHHHH
Q 017700 219 PLCSAQVQFSLLSMGEN-QLEIKNICDSLGIRLISYSPLGLGMLTGKYTPSKLPRGPRALLFRQI---LPGLK-PLLRSL 293 (367)
Q Consensus 219 ~~~~~q~~~n~~~~~~~-~~~l~~~~~~~gi~v~a~~pl~~G~L~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~l 293 (367)
+++.+.-.-++-..+ ..++++.++++|..+..= ++. +........++. .+-+.. .+.-. .++-.-
T Consensus 86 --~~IEiS~G~~~i~~~~~~rlI~~~~~~g~~v~~E--vG~-----K~~~~~~~~~~~-~~i~~~~~~LeAGA~~ViiEa 155 (237)
T TIGR03849 86 --EAVEISDGSMEISLEERCNLIERAKDNGFMVLSE--VGK-----KSPEKDSELTPD-DRIKLINKDLEAGADYVIIEG 155 (237)
T ss_pred --CEEEEcCCccCCCHHHHHHHHHHHHhCCCeEecc--ccc-----cCCcccccCCHH-HHHHHHHHHHHCCCcEEEEee
Confidence 555554444433322 247899999999888642 221 110000000000 000000 00000 000000
Q ss_pred H------HHHHHhCCCHHHHHHHHHHcCCC-eeecCCCCHHHHHHHHhccCC-----CCCHHHHHHHHHHHhhCCh
Q 017700 294 K------EIAERRGKTIPQVAINWCICKGT-IPIPGVKSVKQVEENLGALGW-----RLSSDELLELEYAALESPQ 357 (367)
Q Consensus 294 ~------~la~~~g~t~~qlal~~~l~~~~-~vi~g~~~~e~l~enl~a~~~-----~L~~e~~~~l~~~~~~~~~ 357 (367)
+ -+.+.-|---.++.-..+-..+. -+|.=+.+++|-...+..+.. ..+++|+-.|+.+...++.
T Consensus 156 rEsg~~~Gi~~~~g~~r~d~v~~i~~~l~~eklifEAp~k~~q~~~I~~~G~~VNL~NI~~~evi~LE~LR~GLrg 231 (237)
T TIGR03849 156 RESGKNIGLFDEKGNVKEDELDVLAENVDINKVIFEAPQKNQQVEFILKFGPDVNLGNIPPEEVISLETLRRGLRG 231 (237)
T ss_pred hhcCCCcceeCCCCCCchHHHHHHHhhCChhcEEEECCCHHHHHHHHHHhCCCcccccCCHHHHHHHHHHhccccc
Confidence 0 11111111223333333333344 688888889988888886532 4678888888888776543
No 83
>cd00308 enolase_like Enolase-superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Enolase superfamily contains different enzymes, like enolases, glutarate-, fucanate- and galactonate dehydratases, o-succinylbenzoate synthase, N-acylamino acid racemase, L-alanine-DL-glutamate epimerase, mandelate racemase, muconate lactonizing enzyme and 3-methylaspartase.
Probab=51.34 E-value=1e+02 Score=27.52 Aligned_cols=74 Identities=12% Similarity=0.130 Sum_probs=47.0
Q ss_pred HHHHHHHHHcCcEe-EEeecCCChHHHHHHHHHHHhcCCCceeEEeeecccccccchhhHHHHHHHcCCeEEEecCCCCc
Q 017700 181 WNGLVAMYEKGLVR-AVGVSNYGPNQLVKIHDYLTARGVPLCSAQVQFSLLSMGENQLEIKNICDSLGIRLISYSPLGLG 259 (367)
Q Consensus 181 ~~~L~~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~v~a~~pl~~G 259 (367)
++.+.+|++...+. ..+=|.++...+..+++. ..++++|+..+.+---..-.++...|+++|+.++.++.+..+
T Consensus 134 ~~~~~~L~~~~~~pIa~dEs~~~~~~~~~~~~~-----~~~d~~~~k~~~~GGi~~~~~i~~~a~~~gi~~~~~~~~~s~ 208 (229)
T cd00308 134 LEGYAALRRRTGIPIAADESVTTVDDALEALEL-----GAVDILQIKPTRVGGLTESRRAADLAEAFGIRVMVHGTLESS 208 (229)
T ss_pred HHHHHHHHhhCCCCEEeCCCCCCHHHHHHHHHc-----CCCCEEecCccccCCHHHHHHHHHHHHHcCCEEeecCCCCCH
Confidence 56677788777664 334444555555544443 346777777665422112237889999999999998776654
No 84
>PRK13753 dihydropteroate synthase; Provisional
Probab=51.24 E-value=2.1e+02 Score=26.75 Aligned_cols=104 Identities=15% Similarity=0.137 Sum_probs=64.0
Q ss_pred ChHHHHHHHHHHHhhhCCCcEEEEEecc-CCCCCCCh--hHHHHHHHHHHHHHcCcEeEEeecCCChHHHHHHHHHHHhc
Q 017700 140 TPGQFVNACRASLARLQIEQIGIGQLHW-STANYAPP--QELALWNGLVAMYEKGLVRAVGVSNYGPNQLVKIHDYLTAR 216 (367)
Q Consensus 140 ~~~~i~~~l~~sL~~Lg~d~iDl~~lH~-~~~~~~~~--~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~ 216 (367)
+.+.+.+..++.+ .-|.|-||+----. |.....+. +...+...++.+++.+. -|.|.++.++.++++++.
T Consensus 23 ~~d~a~~~a~~m~-~~GAdIIDIGgeSTrPga~~vs~eeE~~Rv~pvI~~l~~~~~--~ISIDT~~~~va~~al~a---- 95 (279)
T PRK13753 23 DPAGAVTAAIEML-RVGSDVVDVGPAASHPDARPVSPADEIRRIAPLLDALSDQMH--RVSIDSFQPETQRYALKR---- 95 (279)
T ss_pred CHHHHHHHHHHHH-HCCCcEEEECCCCCCCCCCcCCHHHHHHHHHHHHHHHHhCCC--cEEEECCCHHHHHHHHHc----
Confidence 5566666666643 55889999755332 32221111 22234578888888763 489999999998888764
Q ss_pred CCCceeEEeeecccccccchhhHHHHHHHcCCeEEEecCCC
Q 017700 217 GVPLCSAQVQFSLLSMGENQLEIKNICDSLGIRLISYSPLG 257 (367)
Q Consensus 217 ~~~~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~v~a~~pl~ 257 (367)
|..+ +|- .+-+. ...+.+.+.+.+++++.+--.+
T Consensus 96 Gadi-IND--Vsg~~----d~~~~~vva~~~~~vVlmH~~~ 129 (279)
T PRK13753 96 GVGY-LND--IQGFP----DPALYPDIAEADCRLVVMHSAQ 129 (279)
T ss_pred CCCE-EEe--CCCCC----chHHHHHHHHcCCCEEEEecCC
Confidence 4333 222 22221 2267888999999998876543
No 85
>cd03321 mandelate_racemase Mandelate racemase (MR) catalyzes the Mg2+-dependent 1,1-proton transfer reaction that interconverts the enantiomers of mandelic acid. MR is the first enzyme in the bacterial pathway that converts mandelic acid to benzoic acid and allows this pathway to utilize either enantiomer of mandelate. MR belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=50.96 E-value=2.3e+02 Score=27.18 Aligned_cols=152 Identities=14% Similarity=0.126 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHHHCCCCEEeCCCCcCCCCCCChHHHHHHHHHhhCCCCCCCCCcEEEEeeccCCCCCCChHHHHHHHHHH
Q 017700 72 DSQLQQTFNLAVENGINLFDTADSYGTGRLNGKSEKLLGKFISEIPGQKQVQNNIVIATKFAAYPWRLTPGQFVNACRAS 151 (367)
Q Consensus 72 ~~~a~~~l~~A~~~Gi~~~DTA~~Yg~~~~~g~sE~~lG~al~~~~~~~~~R~~v~i~tK~~~~~~~~~~~~i~~~l~~s 151 (367)
.++..+.+..+++.|++.|=.=-.... -..+...=+++++. ..+++.|..-.- ..++.+...+-++ .
T Consensus 142 ~~~~~~~a~~~~~~Gf~~~KiKvg~~~----~~~d~~~v~air~~-----~g~~~~l~vDaN---~~~~~~~A~~~~~-~ 208 (355)
T cd03321 142 AKLATERAVTAAEEGFHAVKTKIGYPT----ADEDLAVVRSIRQA-----VGDGVGLMVDYN---QSLTVPEAIERGQ-A 208 (355)
T ss_pred HHHHHHHHHHHHHhhhHHHhhhcCCCC----hHhHHHHHHHHHHh-----hCCCCEEEEeCC---CCcCHHHHHHHHH-H
Confidence 356666677777889876532111111 01122222344442 223444443321 2235555433333 3
Q ss_pred HhhhCCCcEEEEEeccCCCCCCChhHHHHHHHHHHHHHcCcE-eEEeecCCChHHHHHHHHHHHhcCCCceeEEeeeccc
Q 017700 152 LARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKGLV-RAVGVSNYGPNQLVKIHDYLTARGVPLCSAQVQFSLL 230 (367)
Q Consensus 152 L~~Lg~d~iDl~~lH~~~~~~~~~~~~~~~~~L~~l~~~G~i-r~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~ 230 (367)
|+.++. .++..|-.. . -++.+.+|+++--| -..|=+.++..++..+++. --++++|+..+.+
T Consensus 209 l~~~~i-----~~iEeP~~~----~---d~~~~~~l~~~~~ipia~~E~~~~~~~~~~~i~~-----~~~d~i~~~~~~~ 271 (355)
T cd03321 209 LDQEGL-----TWIEEPTLQ----H---DYEGHARIASALRTPVQMGENWLGPEEMFKALSA-----GACDLVMPDLMKI 271 (355)
T ss_pred HHcCCC-----CEEECCCCC----c---CHHHHHHHHHhcCCCEEEcCCCcCHHHHHHHHHh-----CCCCeEecCHhhh
Confidence 344543 445544211 1 25677777776443 2456566777877777664 3467777776654
Q ss_pred ccccchhhHHHHHHHcCCeEEEe
Q 017700 231 SMGENQLEIKNICDSLGIRLISY 253 (367)
Q Consensus 231 ~~~~~~~~l~~~~~~~gi~v~a~ 253 (367)
---.+-.++.+.|+.+|+.++.+
T Consensus 272 GGit~~~~ia~~A~~~gi~~~~h 294 (355)
T cd03321 272 GGVTGWLRASALAEQAGIPMSSH 294 (355)
T ss_pred CCHHHHHHHHHHHHHcCCeeccc
Confidence 22122247899999999998643
No 86
>cd01973 Nitrogenase_VFe_beta_like Nitrogenase_VFe_beta -like: Nitrogenase VFe protein, beta subunit like. This group contains proteins similar to the beta subunits of the VFe protein of the vanadium-dependent (V-) nitrogenase. Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V-nitrogenase there is a molybdenum (Mo)-dependent nitrogenase and an iron only (Fe-) nitrogenase. The Mo-nitrogenase is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe p
Probab=50.82 E-value=2.7e+02 Score=27.92 Aligned_cols=115 Identities=13% Similarity=0.127 Sum_probs=60.2
Q ss_pred CCCCcCCCCCCChHHHHHHHHHhhCCCCCCC-CCcEEEEeeccCCCCCCChHHHHHHHHHHHhhhCCC----cEEEEEec
Q 017700 92 TADSYGTGRLNGKSEKLLGKFISEIPGQKQV-QNNIVIATKFAAYPWRLTPGQFVNACRASLARLQIE----QIGIGQLH 166 (367)
Q Consensus 92 TA~~Yg~~~~~g~sE~~lG~al~~~~~~~~~-R~~v~i~tK~~~~~~~~~~~~i~~~l~~sL~~Lg~d----~iDl~~lH 166 (367)
..-.||. |+-|-++|+...+. .+ .+=|+|.|-+.+. .--++|..-+++.-+.++-+ .+.++.+|
T Consensus 64 ~d~VfGG-------~~~L~~~I~~~~~~-~~~p~~I~V~tTC~~e---iIGDDi~~vv~~~~~~~~~e~~~~~~~vi~v~ 132 (454)
T cd01973 64 DSAVFGG-------AKRVEEGVLVLARR-YPDLRVIPIITTCSTE---IIGDDIEGVIRKLNEALKEEFPDREVHLIPVH 132 (454)
T ss_pred CceEECc-------HHHHHHHHHHHHHh-cCCCCEEEEECCchHh---hhccCHHHHHHHHHhhhhhccCCCCCeEEEee
Confidence 3457886 77777777663210 11 1236777776432 12233333333332222111 47888899
Q ss_pred cCCCCCCChhHHHHHHHHHHHHH--------cCcEeEEeecCCChHHHHHHHHHHHhcCCCc
Q 017700 167 WSTANYAPPQELALWNGLVAMYE--------KGLVRAVGVSNYGPNQLVKIHDYLTARGVPL 220 (367)
Q Consensus 167 ~~~~~~~~~~~~~~~~~L~~l~~--------~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~ 220 (367)
.|+... ....+...+++.+.+ +++|.-||-.+ ++..++++.+..+..|+.+
T Consensus 133 tpgF~G--s~~~G~~~a~~ali~~~~~~~~~~~~VNii~~~~-~~~D~~ei~~lL~~~Gl~v 191 (454)
T cd01973 133 TPSFKG--SMVTGYDEAVRSVVKTIAKKGAPSGKLNVFTGWV-NPGDVVELKHYLSEMDVEA 191 (454)
T ss_pred CCCcCC--CHHHHHHHHHHHHHHHhcccCCCCCcEEEECCCC-ChHHHHHHHHHHHHcCCCE
Confidence 875332 222333334433332 46788887433 4566778888777776554
No 87
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=50.20 E-value=2e+02 Score=26.27 Aligned_cols=16 Identities=31% Similarity=0.605 Sum_probs=10.8
Q ss_pred hHHHHHHHcCCeEEEe
Q 017700 238 EIKNICDSLGIRLISY 253 (367)
Q Consensus 238 ~l~~~~~~~gi~v~a~ 253 (367)
..++.|++.|+.++..
T Consensus 103 ~~i~~a~~lG~~~i~~ 118 (283)
T PRK13209 103 KAIQLAQDLGIRVIQL 118 (283)
T ss_pred HHHHHHHHcCCCEEEE
Confidence 4567777777777654
No 88
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=49.94 E-value=35 Score=31.26 Aligned_cols=103 Identities=13% Similarity=0.175 Sum_probs=57.6
Q ss_pred HHHHHHHHhhhCCCcEEEEEeccCCCCCCChhHHHHHHHHHHHHHcCcEeEEeecCC----ChHHHHHHHHHHHhcCCCc
Q 017700 145 VNACRASLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKGLVRAVGVSNY----GPNQLVKIHDYLTARGVPL 220 (367)
Q Consensus 145 ~~~l~~sL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvS~~----~~~~l~~~~~~~~~~~~~~ 220 (367)
.+.+++.|+..| +|||++-+-|-.....+. +-+-+.++-+++-|.--+.|=.-+ ....+++.++.|+..|+
T Consensus 24 ~~~~~dlLe~ag-~yID~~K~g~Gt~~l~~~--~~l~eki~l~~~~gV~v~~GGtl~E~a~~q~~~~~yl~~~k~lGf-- 98 (244)
T PF02679_consen 24 LRYLEDLLESAG-DYIDFLKFGWGTSALYPE--EILKEKIDLAHSHGVYVYPGGTLFEVAYQQGKFDEYLEECKELGF-- 98 (244)
T ss_dssp HHHHHHHHHHHG-GG-SEEEE-TTGGGGSTC--HHHHHHHHHHHCTT-EEEE-HHHHHHHHHTT-HHHHHHHHHHCT---
T ss_pred HHHHHHHHHHhh-hhccEEEecCceeeecCH--HHHHHHHHHHHHcCCeEeCCcHHHHHHHhcChHHHHHHHHHHcCC--
Confidence 466778888888 799999999864322222 224455556666676666662111 13446778888887664
Q ss_pred eeEEeeecccccccc-hhhHHHHHHHcCCeEEE
Q 017700 221 CSAQVQFSLLSMGEN-QLEIKNICDSLGIRLIS 252 (367)
Q Consensus 221 ~~~q~~~n~~~~~~~-~~~l~~~~~~~gi~v~a 252 (367)
+++.+.-.-++-..+ ...+++.++++|..|+.
T Consensus 99 ~~IEiSdGti~l~~~~r~~~I~~~~~~Gf~v~~ 131 (244)
T PF02679_consen 99 DAIEISDGTIDLPEEERLRLIRKAKEEGFKVLS 131 (244)
T ss_dssp SEEEE--SSS---HHHHHHHHHHHCCTTSEEEE
T ss_pred CEEEecCCceeCCHHHHHHHHHHHHHCCCEEee
Confidence 444444443333222 24788999999988866
No 89
>TIGR03821 AblA_like_1 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in E. coli, Buchnera, Yersinia, etc.
Probab=49.62 E-value=2.4e+02 Score=26.88 Aligned_cols=80 Identities=15% Similarity=0.128 Sum_probs=48.4
Q ss_pred HHHHHHHHHHcCcEeEEeecC----CChHHH-HHHHHHHHhcCCCceeEEeeeccc-ccccchhhHHHHHHHcCCeEEEe
Q 017700 180 LWNGLVAMYEKGLVRAVGVSN----YGPNQL-VKIHDYLTARGVPLCSAQVQFSLL-SMGENQLEIKNICDSLGIRLISY 253 (367)
Q Consensus 180 ~~~~L~~l~~~G~ir~iGvS~----~~~~~l-~~~~~~~~~~~~~~~~~q~~~n~~-~~~~~~~~l~~~~~~~gi~v~a~ 253 (367)
+.+.++.+..-..++.+|+.. ..+..+ +++.+..+..+.+. ++++.+|=. +-...-.+.++.+++.|+.+...
T Consensus 161 L~~ll~~l~~i~~~~~iri~tr~~~~~p~rit~el~~~L~~~~~~~-~~~~h~dh~~Ei~d~~~~ai~~L~~~Gi~v~~q 239 (321)
T TIGR03821 161 LDWLLNLLEQIPHLKRLRIHTRLPVVIPDRITSGLCDLLANSRLQT-VLVVHINHANEIDAEVADALAKLRNAGITLLNQ 239 (321)
T ss_pred HHHHHHHHHhCCCCcEEEEecCcceeeHHHhhHHHHHHHHhcCCcE-EEEeeCCChHhCcHHHHHHHHHHHHcCCEEEec
Confidence 566777777777888888753 333433 44555444443322 234455422 11122235788889999999999
Q ss_pred cCCCCcc
Q 017700 254 SPLGLGM 260 (367)
Q Consensus 254 ~pl~~G~ 260 (367)
+++..|.
T Consensus 240 tvllkgi 246 (321)
T TIGR03821 240 SVLLRGV 246 (321)
T ss_pred ceeeCCC
Confidence 9998774
No 90
>PF02401 LYTB: LytB protein; InterPro: IPR003451 Terpenes are among the largest groups of natural products and include compounds such as vitamins, cholesterol and carotenoids. The biosynthesis of all terpenoids begins with one or both of the two C5 precursors of the pathway: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). In animals, fungi, and certain bacteria, the synthesis of IPP and DMAPP occurs via the well-known mevalonate pathway, however, a second, nonmevalonate terpenoid pathway has been identified in many eubacteria, algae and the chloroplasts of higher plants []. LytB(IspH) catalyses the conversion of 1-hydroy-2-methyl-2-(E)-butenyl 4-diphosphate into IPP and DMAPP in this second pathway The enzyme appears to be responsible for a branch-step in the nonmevalonate pathway, in that IPP and DMAPP are produced in parallel from a single precursor although the exact mechanism of this is not currently fully understood []. Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response [].; GO: 0019288 isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, 0055114 oxidation-reduction process; PDB: 3DNF_B 3SZL_B 3KE8_B 3KEF_B 3SZU_A 3KEL_A 3F7T_B 3KE9_B 3KEM_B 3T0G_A ....
Probab=49.50 E-value=58 Score=30.53 Aligned_cols=112 Identities=16% Similarity=0.148 Sum_probs=66.6
Q ss_pred CcEeEEeecCCChHHHHHHHHHHHhcCCCceeEEeeeccccccc-chhhHHHHHHHcCCeEEEecCCCCccccCCCCCCC
Q 017700 191 GLVRAVGVSNYGPNQLVKIHDYLTARGVPLCSAQVQFSLLSMGE-NQLEIKNICDSLGIRLISYSPLGLGMLTGKYTPSK 269 (367)
Q Consensus 191 G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~-~~~~l~~~~~~~gi~v~a~~pl~~G~L~~~~~~~~ 269 (367)
+++-.+-=++.+.+.+.++.+.++....... ..+.-+++.... .+..+.+.+++-++-++..+.-...
T Consensus 155 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~-~~~~nTIC~aT~~RQ~a~~~La~~vD~miVIGg~~SsN---------- 223 (281)
T PF02401_consen 155 KKVAVVSQTTQSVEKFEEIVEALKKRFPELE-GPVFNTICYATQNRQEAARELAKEVDAMIVIGGKNSSN---------- 223 (281)
T ss_dssp TCEEEEE-TTS-HHHHHHHHHHHHHHSTCEE--SCC-S--CHHHHHHHHHHHHHCCSSEEEEES-TT-HH----------
T ss_pred CeEEEEEeecccHHHHHHHHHHHHHhCcccc-CCCCCCCCHhHHHHHHHHHHHHhhCCEEEEecCCCCcc----------
Confidence 4677777777888888888888765432221 112222222211 2346777888878777664333221
Q ss_pred CCCChhhhhhhhhccChHHHHHHHHHHHHHhC------CCHHHHHHHHHHcCCC-eeecCCCCHHHHHHHH
Q 017700 270 LPRGPRALLFRQILPGLKPLLRSLKEIAERRG------KTIPQVAINWCICKGT-IPIPGVKSVKQVEENL 333 (367)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~g------~t~~qlal~~~l~~~~-~vi~g~~~~e~l~enl 333 (367)
-.+|.++|++++ -++.++...|+-.... .+..|+|+|+.+-+.+
T Consensus 224 --------------------T~kL~eia~~~~~~t~~Ie~~~el~~~~l~~~~~VGItaGASTP~~ii~eV 274 (281)
T PF02401_consen 224 --------------------TRKLAEIAKEHGKPTYHIETADELDPEWLKGVKKVGITAGASTPDWIIEEV 274 (281)
T ss_dssp --------------------HHHHHHHHHHCTTCEEEESSGGG--HHHHTT-SEEEEEE-TTS-HHHHHHH
T ss_pred --------------------HHHHHHHHHHhCCCEEEeCCccccCHhHhCCCCEEEEEccCCCCHHHHHHH
Confidence 168999999987 3889999999988766 7999999998887664
No 91
>PF10100 DUF2338: Uncharacterized protein conserved in bacteria (DUF2338); InterPro: IPR016935 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=49.31 E-value=1.3e+02 Score=29.65 Aligned_cols=129 Identities=20% Similarity=0.243 Sum_probs=80.2
Q ss_pred HHHHHHHHcCcEeEEeecCCChHHHHHHHHHHHhcCCCceeEEeeecccccccchhhHHHHHHHcCCeEEEecCCCCccc
Q 017700 182 NGLVAMYEKGLVRAVGVSNYGPNQLVKIHDYLTARGVPLCSAQVQFSLLSMGENQLEIKNICDSLGIRLISYSPLGLGML 261 (367)
Q Consensus 182 ~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~v~a~~pl~~G~L 261 (367)
..+-..+++.. |+|-++.+...+.++....+..|+.+.++-. ++ .|+.++|.+.++.||-..-+
T Consensus 160 ~vlt~~vK~ki--YigSt~~~s~~~~~l~~~~~~~gI~~~~~~~---pl-----------~AE~rNislYVHpplfmndf 223 (429)
T PF10100_consen 160 RVLTTAVKKKI--YIGSTHSNSPELDKLCRLLAQLGIQLEVMDN---PL-----------EAESRNISLYVHPPLFMNDF 223 (429)
T ss_pred eehhhhhhceE--EEEeCCCCChHHHHHHHHHHHcCCeEEEeCC---hH-----------hhhhcccceecCChHhhChh
Confidence 45555555555 9999988888888888887777765544322 11 47888999999999876533
Q ss_pred c----------CCCCCCCCCCChhhhhhhhhccChHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCCeeecCCCCHHHHH
Q 017700 262 T----------GKYTPSKLPRGPRALLFRQILPGLKPLLRSLKEIAERRGKTIPQVAINWCICKGTIPIPGVKSVKQVE 330 (367)
Q Consensus 262 ~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~g~t~~qlal~~~l~~~~~vi~g~~~~e~l~ 330 (367)
+ .+|-.+-+|+++-... ...+...++.++..|-++.|+.+.- .|+|.....--|-+-+=+.++++
T Consensus 224 sL~aIF~~~~~~kYvYKL~PEGPIT~~---~I~~M~~lw~Ei~~i~~~l~~~~~N-LLkFm~ddNYPV~~eslsr~~Ie 298 (429)
T PF10100_consen 224 SLNAIFEEDGVPKYVYKLFPEGPITPT---LIRDMVQLWKEIMEILNKLGIEPFN-LLKFMNDDNYPVRPESLSRDDIE 298 (429)
T ss_pred hHHHHhCCCCCcceEEecCCCCCCCHH---HHHHHHHHHHHHHHHHHHcCCCcch-HHHHhccCCCCCChhhCCHHHHh
Confidence 2 1122222455443221 2334556678888899999988877 68888664433333333444443
No 92
>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD. NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=49.07 E-value=94 Score=30.88 Aligned_cols=72 Identities=17% Similarity=0.194 Sum_probs=51.9
Q ss_pred HHHHHHHHcCcEeEEeecCCChHHHHHHHHHHHhc---CCCceeEEeeecccccccchhhHHHHHHHcCCeEEEecC
Q 017700 182 NGLVAMYEKGLVRAVGVSNYGPNQLVKIHDYLTAR---GVPLCSAQVQFSLLSMGENQLEIKNICDSLGIRLISYSP 255 (367)
Q Consensus 182 ~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~---~~~~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~v~a~~p 255 (367)
+-...+=+.|-+..+|..+.+++++++.++.++.. +-|+-+|-+ .++-++..+ ..+++.+.++||.++..+.
T Consensus 29 eLVaAvs~AGgLG~lgag~l~~e~l~~~I~~ir~~lt~~~PfGVNL~-~~~~~~~~e-~~~v~l~le~gV~~ve~sa 103 (418)
T cd04742 29 ELVVAMGKAGMLGFFGAGGLPLDEVEQAIERIQAALGNGEPYGVNLI-HSPDEPELE-EGLVDLFLRHGVRVVEASA 103 (418)
T ss_pred HHHHHHHhCCCeeeecCCCCCHHHHHHHHHHHHHhccCCCCeEEeee-cCCCCchhH-HHHHHHHHHcCCCEEEecc
Confidence 44455667899999999999999998888888763 456766654 333332223 3789999999998876553
No 93
>COG0282 ackA Acetate kinase [Energy production and conversion]
Probab=48.82 E-value=2.1e+02 Score=28.10 Aligned_cols=122 Identities=17% Similarity=0.207 Sum_probs=72.0
Q ss_pred HHHHHcCcEeEEeecCCChHHHHHHHHHHHhcCCCc-eeEEeeecccccccchhhHHHHHHHcCCeE---EEecCCCCcc
Q 017700 185 VAMYEKGLVRAVGVSNYGPNQLVKIHDYLTARGVPL-CSAQVQFSLLSMGENQLEIKNICDSLGIRL---ISYSPLGLGM 260 (367)
Q Consensus 185 ~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~-~~~q~~~n~~~~~~~~~~l~~~~~~~gi~v---~a~~pl~~G~ 260 (367)
.++.++=.||.+|+=+-+-.- -..+.++-.+-+. +.+.+..++-+- .-=.|-++|..| +.+.||.| +
T Consensus 164 ~~~y~~~gIRrYGFHGtSh~Y--Vs~~aa~~L~k~~~~l~~I~~HLGNG------ASicAiknGkSvDTSMGfTPLeG-l 234 (396)
T COG0282 164 YELYEKYGIRRYGFHGTSHKY--VSQRAAEILGKPLEDLNLITCHLGNG------ASICAIKNGKSVDTSMGFTPLEG-L 234 (396)
T ss_pred HHHHHhcCceecccCccchHH--HHHHHHHHhCCCccccCEEEEEecCc------hhhhhhhCCeeeccCCCCCcccc-e
Confidence 678888899999995544332 2223333333342 677777777652 223566788777 67888875 3
Q ss_pred ccCCCCCCCCCCChhhhhhhhhccChHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCCeeecCCCC-HHHHHHHHh
Q 017700 261 LTGKYTPSKLPRGPRALLFRQILPGLKPLLRSLKEIAERRGKTIPQVAINWCICKGTIPIPGVKS-VKQVEENLG 334 (367)
Q Consensus 261 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~g~t~~qlal~~~l~~~~~vi~g~~~-~e~l~enl~ 334 (367)
.-|....+--| ..+.-++++.|+|..|+----.-..|.-=|.|-++ ...|+++.+
T Consensus 235 ~MGTRsGdiDP-------------------~ii~~l~~~~~~s~~~i~~~LNkkSGllGlSg~ssD~R~l~~~~~ 290 (396)
T COG0282 235 MMGTRSGDIDP-------------------GIILYLMEQEGMSAEEIDTLLNKKSGLLGLSGLSSDMRDLEEAAA 290 (396)
T ss_pred eccCCCCCCCh-------------------HHHHHHHHhcCCCHHHHHHHHhhhccccccccccchHHHHHHHhc
Confidence 33322222111 56777888889999986544333333355666444 566665554
No 94
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=48.65 E-value=2e+02 Score=26.19 Aligned_cols=78 Identities=12% Similarity=0.213 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHcCc-EeEEeecCC------ChHHHHHHHHHHHhcCCCceeEEeeeccccccc----chhhHHHHHHH
Q 017700 177 ELALWNGLVAMYEKGL-VRAVGVSNY------GPNQLVKIHDYLTARGVPLCSAQVQFSLLSMGE----NQLEIKNICDS 245 (367)
Q Consensus 177 ~~~~~~~L~~l~~~G~-ir~iGvS~~------~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~----~~~~l~~~~~~ 245 (367)
....++.+++|++.|. |-.||+-.| +...+...++.....|.++.+.++.+....... .-..+++.|.+
T Consensus 135 ~~~~~~~v~~l~~~g~~iDgiGlQ~H~~~~~~~~~~~~~~l~~~~~~g~pi~iTE~dv~~~~~~~~qA~~~~~~l~~~~~ 214 (254)
T smart00633 135 RQAIYELVKKLKAKGVPIDGIGLQSHLSLGSPNIAEIRAALDRFASLGLEIQITELDISGYPNPQAQAADYEEVFKACLA 214 (254)
T ss_pred HHHHHHHHHHHHHCCCccceeeeeeeecCCCCCHHHHHHHHHHHHHcCCceEEEEeecCCCCcHHHHHHHHHHHHHHHHc
Confidence 3467899999999999 999998555 356677777766666777777766665432100 11367888888
Q ss_pred cC--CeEEEec
Q 017700 246 LG--IRLISYS 254 (367)
Q Consensus 246 ~g--i~v~a~~ 254 (367)
+. .+|+-|.
T Consensus 215 ~p~v~gi~~Wg 225 (254)
T smart00633 215 HPAVTGVTVWG 225 (254)
T ss_pred CCCeeEEEEeC
Confidence 75 5666664
No 95
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=47.82 E-value=3.1e+02 Score=28.04 Aligned_cols=68 Identities=16% Similarity=0.316 Sum_probs=37.4
Q ss_pred cCcEeEEeecCC---ChHHHHHHHHHHHhcCCCceeEE--------------eeecccc-cccchhhHHHHHH-HcCCeE
Q 017700 190 KGLVRAVGVSNY---GPNQLVKIHDYLTARGVPLCSAQ--------------VQFSLLS-MGENQLEIKNICD-SLGIRL 250 (367)
Q Consensus 190 ~G~ir~iGvS~~---~~~~l~~~~~~~~~~~~~~~~~q--------------~~~n~~~-~~~~~~~l~~~~~-~~gi~v 250 (367)
+++|.=||.++. ....+.++.+..+..|+.+-++- -.+|+.- +.... .+.++.+ +.|++.
T Consensus 163 ~~~VNIIG~~~l~f~~~~Dl~eikrLL~~~Gi~vn~v~~~g~sl~di~~~~~A~~NIvl~~~~g~-~~A~~Le~~fgiP~ 241 (513)
T CHL00076 163 KPSVNIIGIFTLGFHNQHDCRELKRLLQDLGIEINQIIPEGGSVEDLKNLPKAWFNIVPYREVGL-MTAKYLEKEFGMPY 241 (513)
T ss_pred CCcEEEEecCCCCCCCcchHHHHHHHHHHCCCeEEEEECCCCCHHHHHhcccCcEEEEechhhhH-HHHHHHHHHhCCCe
Confidence 467999997743 34567777777777665443221 1222221 11111 3444444 458888
Q ss_pred EEecCCCC
Q 017700 251 ISYSPLGL 258 (367)
Q Consensus 251 ~a~~pl~~ 258 (367)
+...|+|-
T Consensus 242 i~~~PiGi 249 (513)
T CHL00076 242 ISTTPMGI 249 (513)
T ss_pred EeeccCCH
Confidence 77777753
No 96
>TIGR03586 PseI pseudaminic acid synthase.
Probab=47.80 E-value=2.6e+02 Score=26.80 Aligned_cols=139 Identities=19% Similarity=0.177 Sum_probs=75.3
Q ss_pred CCHHHHHHHHHHHHHCCCCEEeCCCCcCC---------CC-CCChH----HHHHHHHHhhCCCCCCCCCcEEEEeeccCC
Q 017700 70 SMDSQLQQTFNLAVENGINLFDTADSYGT---------GR-LNGKS----EKLLGKFISEIPGQKQVQNNIVIATKFAAY 135 (367)
Q Consensus 70 ~~~~~a~~~l~~A~~~Gi~~~DTA~~Yg~---------~~-~~g~s----E~~lG~al~~~~~~~~~R~~v~i~tK~~~~ 135 (367)
.+.++-.++.+++-+.|+.++=|.-.-.. +- --|.. -.+|- .+.. ....|+|+|-.+
T Consensus 74 l~~e~~~~L~~~~~~~Gi~~~stpfd~~svd~l~~~~v~~~KI~S~~~~n~~LL~-~va~------~gkPvilstG~~-- 144 (327)
T TIGR03586 74 TPWEWHKELFERAKELGLTIFSSPFDETAVDFLESLDVPAYKIASFEITDLPLIR-YVAK------TGKPIIMSTGIA-- 144 (327)
T ss_pred CCHHHHHHHHHHHHHhCCcEEEccCCHHHHHHHHHcCCCEEEECCccccCHHHHH-HHHh------cCCcEEEECCCC--
Confidence 45677788889999999988855432111 00 00000 11111 1111 223345444432
Q ss_pred CCCCChHHHHHHHHHHHhhhCCCcEEEEEeccCCCCCCChhHHHHHHHHHHHHHcCcEeEEeecCCChHHHHHHHHHHHh
Q 017700 136 PWRLTPGQFVNACRASLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKGLVRAVGVSNYGPNQLVKIHDYLTA 215 (367)
Q Consensus 136 ~~~~~~~~i~~~l~~sL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~ 215 (367)
+.+++..+++-..+. |. -|+.++|+......+.. +-=+.++..|++.-. .-||+|.|+......+... .
T Consensus 145 ----t~~Ei~~Av~~i~~~-g~--~~i~LlhC~s~YP~~~~-~~nL~~i~~lk~~f~-~pVG~SDHt~G~~~~~aAv--a 213 (327)
T TIGR03586 145 ----TLEEIQEAVEACREA-GC--KDLVLLKCTSSYPAPLE-DANLRTIPDLAERFN-VPVGLSDHTLGILAPVAAV--A 213 (327)
T ss_pred ----CHHHHHHHHHHHHHC-CC--CcEEEEecCCCCCCCcc-cCCHHHHHHHHHHhC-CCEEeeCCCCchHHHHHHH--H
Confidence 788899888887543 32 47899998643222221 113566777776443 4799999987653333332 2
Q ss_pred cCCCceeEEeeeccc
Q 017700 216 RGVPLCSAQVQFSLL 230 (367)
Q Consensus 216 ~~~~~~~~q~~~n~~ 230 (367)
.|. .+++.++++-
T Consensus 214 ~GA--~iIEkH~tld 226 (327)
T TIGR03586 214 LGA--CVIEKHFTLD 226 (327)
T ss_pred cCC--CEEEeCCChh
Confidence 233 3677777653
No 97
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=47.15 E-value=2.2e+02 Score=26.03 Aligned_cols=13 Identities=8% Similarity=0.138 Sum_probs=10.5
Q ss_pred HHhhhCCCcEEEE
Q 017700 151 SLARLQIEQIGIG 163 (367)
Q Consensus 151 sL~~Lg~d~iDl~ 163 (367)
..+.+|.++|++.
T Consensus 24 ~~~~~G~~~iEl~ 36 (284)
T PRK13210 24 FAKELGFDFVEMS 36 (284)
T ss_pred HHHHcCCCeEEEe
Confidence 3468999999985
No 98
>PF04748 Polysacc_deac_2: Divergent polysaccharide deacetylase; InterPro: IPR006837 This is a family of uncharacterised proteins that includes YibQ.; PDB: 2QV5_A 2NLY_A.
Probab=47.12 E-value=1.6e+02 Score=26.32 Aligned_cols=54 Identities=6% Similarity=0.133 Sum_probs=31.2
Q ss_pred CCCHHHHHHHHHHHHHC-----CCCEEeCCCCcCCCCCCChHHHHHHHHHhhCCCCCCCCCcEEEEeecc
Q 017700 69 ESMDSQLQQTFNLAVEN-----GINLFDTADSYGTGRLNGKSEKLLGKFISEIPGQKQVQNNIVIATKFA 133 (367)
Q Consensus 69 ~~~~~~a~~~l~~A~~~-----Gi~~~DTA~~Yg~~~~~g~sE~~lG~al~~~~~~~~~R~~v~i~tK~~ 133 (367)
..++++..+.|+.+++. |+|----+..-.+ +..+...++.+. .|.-+||-++..
T Consensus 70 ~~~~~~i~~~l~~al~~vp~a~GvnNhmGS~~T~~-------~~~m~~vl~~l~----~~gl~FvDS~T~ 128 (213)
T PF04748_consen 70 GMSEEEIRKRLEAALARVPGAVGVNNHMGSRFTSD-------REAMRWVLEVLK----ERGLFFVDSRTT 128 (213)
T ss_dssp TS-HHHHHHHHHHHHCCSTT-SEEEEEE-CCHHC--------HHHHHHHHHHHH----HTT-EEEE-S--
T ss_pred CCCHHHHHHHHHHHHHHCCCcEEEecCCCccccCC-------HHHHHHHHHHHH----HcCCEEEeCCCC
Confidence 36788999999999976 5554444444443 666776666542 356677767664
No 99
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=46.38 E-value=56 Score=30.41 Aligned_cols=94 Identities=18% Similarity=0.300 Sum_probs=63.5
Q ss_pred HHhhhCCCcEEEEEeccCCCCCCChhHHHHHHHHHHHHHcCcEeEEeecC---CChHHHHHHHHHHHhcCCCceeEEeee
Q 017700 151 SLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKGLVRAVGVSN---YGPNQLVKIHDYLTARGVPLCSAQVQF 227 (367)
Q Consensus 151 sL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvS~---~~~~~l~~~~~~~~~~~~~~~~~q~~~ 227 (367)
++++...+..|++.+..|....-+ .+..++..-+ .|=|+. ++..++..+++.++.++++..++-++|
T Consensus 155 ~~kk~a~E~~~~~IIDsaaG~gCp--------Vi~sl~~aD~--ai~VTEPTp~glhD~kr~~el~~~f~ip~~iViNr~ 224 (284)
T COG1149 155 ALKKHAKELADLLIIDSAAGTGCP--------VIASLKGADL--AILVTEPTPFGLHDLKRALELVEHFGIPTGIVINRY 224 (284)
T ss_pred HHHHhhhhhcceeEEecCCCCCCh--------HHHhhccCCE--EEEEecCCccchhHHHHHHHHHHHhCCceEEEEecC
Confidence 333443344788888877432222 2233344333 454544 344678889999999999999999999
Q ss_pred cccccccchhhHHHHHHHcCCeEEEecCCCCc
Q 017700 228 SLLSMGENQLEIKNICDSLGIRLISYSPLGLG 259 (367)
Q Consensus 228 n~~~~~~~~~~l~~~~~~~gi~v~a~~pl~~G 259 (367)
|+.+ .++.++|++.|+.+++--|+..-
T Consensus 225 ~~g~-----s~ie~~~~e~gi~il~~IPyd~~ 251 (284)
T COG1149 225 NLGD-----SEIEEYCEEEGIPILGEIPYDKD 251 (284)
T ss_pred CCCc-----hHHHHHHHHcCCCeeEECCcchh
Confidence 6643 26889999999999998888653
No 100
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=46.06 E-value=2.4e+02 Score=25.84 Aligned_cols=166 Identities=13% Similarity=0.063 Sum_probs=88.3
Q ss_pred CCHHHHHHHHHHHHHCCCCEEeCCCC-------cCCCCCCChHHHHHHHHHhhCCCCCCCCCcEEEEeeccCCCCCCChH
Q 017700 70 SMDSQLQQTFNLAVENGINLFDTADS-------YGTGRLNGKSEKLLGKFISEIPGQKQVQNNIVIATKFAAYPWRLTPG 142 (367)
Q Consensus 70 ~~~~~a~~~l~~A~~~Gi~~~DTA~~-------Yg~~~~~g~sE~~lG~al~~~~~~~~~R~~v~i~tK~~~~~~~~~~~ 142 (367)
.+.++..++++.-.+.|+..++.+.. +......-..++.+.+..+.. +..++.+..- +.....+
T Consensus 19 ~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~~~~~~~~~~e~i~~~~~~~-----~~~~~~~~~~----~~~~~~~ 89 (263)
T cd07943 19 FTLEQVRAIARALDAAGVPLIEVGHGDGLGGSSLNYGFAAHTDEEYLEAAAEAL-----KQAKLGVLLL----PGIGTVD 89 (263)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEeecCCCCCCcccccCCCCCChHHHHHHHHHhc-----cCCEEEEEec----CCccCHH
Confidence 56789999999999999999999721 100000022455665554442 2333332221 1111344
Q ss_pred HHHHHHHHHHhhhCCCcEEEEEeccCCCCCCChhHHHHHHHHHHHHHcCcEeEEeec---CCChHHHHHHHHHHHhcCCC
Q 017700 143 QFVNACRASLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKGLVRAVGVS---NYGPNQLVKIHDYLTARGVP 219 (367)
Q Consensus 143 ~i~~~l~~sL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvS---~~~~~~l~~~~~~~~~~~~~ 219 (367)
+ ++..++ .|+|.+-++.-- . +...+.+.++..++.|.--.+.++ .++++.+.++.+.+...|.
T Consensus 90 ~----i~~a~~-~g~~~iri~~~~-s-------~~~~~~~~i~~ak~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~- 155 (263)
T cd07943 90 D----LKMAAD-LGVDVVRVATHC-T-------EADVSEQHIGAARKLGMDVVGFLMMSHMASPEELAEQAKLMESYGA- 155 (263)
T ss_pred H----HHHHHH-cCCCEEEEEech-h-------hHHHHHHHHHHHHHCCCeEEEEEEeccCCCHHHHHHHHHHHHHcCC-
Confidence 4 444443 477777664422 1 123467889999999986655552 2455556555555554443
Q ss_pred ceeEEeeecccccccch-hhHHHHHHHc----CCeEEEecCCCCc
Q 017700 220 LCSAQVQFSLLSMGENQ-LEIKNICDSL----GIRLISYSPLGLG 259 (367)
Q Consensus 220 ~~~~q~~~n~~~~~~~~-~~l~~~~~~~----gi~v~a~~pl~~G 259 (367)
+.+.+.=+.-...+.+ .+++...+++ .++++.+.-++.+
T Consensus 156 -d~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~l~~H~Hn~~GlA 199 (263)
T cd07943 156 -DCVYVTDSAGAMLPDDVRERVRALREALDPTPVGFHGHNNLGLA 199 (263)
T ss_pred -CEEEEcCCCCCcCHHHHHHHHHHHHHhCCCceEEEEecCCcchH
Confidence 3333322222112221 2567776665 3566677766654
No 101
>PRK09485 mmuM homocysteine methyltransferase; Provisional
Probab=45.73 E-value=2.7e+02 Score=26.28 Aligned_cols=172 Identities=12% Similarity=0.056 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHHHCCCCEEeCCCCcCCCC---CCC----hHHHHHHHHHhhCCCC--CCCCCcEEEEeeccCCC------
Q 017700 72 DSQLQQTFNLAVENGINLFDTADSYGTGR---LNG----KSEKLLGKFISEIPGQ--KQVQNNIVIATKFAAYP------ 136 (367)
Q Consensus 72 ~~~a~~~l~~A~~~Gi~~~DTA~~Yg~~~---~~g----~sE~~lG~al~~~~~~--~~~R~~v~i~tK~~~~~------ 136 (367)
++-..++-+.++++|-+.+.|.....+.. ..| +.+++..++++-..+. ...+.+++|+.-+|+..
T Consensus 45 Pe~V~~vH~~yl~AGadiI~TnTy~a~~~~l~~~g~~~~~~~~l~~~av~lA~~a~~~~~~~~~~VaGsiGP~g~~l~~~ 124 (304)
T PRK09485 45 PELIYQVHLDYFRAGADCAITASYQATFQGFAARGLSEAEAEELIRRSVELAKEARDEFWAEKPLVAGSVGPYGAYLADG 124 (304)
T ss_pred hHHHHHHHHHHHHhCCCEEEeeccccCHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEecCCcccccCCC
Confidence 34557777778899999999887654421 112 2344555444321110 01122588988898743
Q ss_pred ------CCCChHHHHHHHHHHHhhhCCCcEEEEEeccCCCCCCChhHHHHHHHHHHHHHc--CcEeEEeecCCC------
Q 017700 137 ------WRLTPGQFVNACRASLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEK--GLVRAVGVSNYG------ 202 (367)
Q Consensus 137 ------~~~~~~~i~~~l~~sL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~~~~L~~l~~~--G~ir~iGvS~~~------ 202 (367)
+..+.+.+++...+..+.|--..+|++++--.. . ..++..+++.+++. ++--.+.++...
T Consensus 125 ~~y~g~~~~~~~~~~~~~~~q~~~l~~~gvD~i~~ET~~----~--~~E~~~~~~~~~~~~~~~pv~is~~~~~~g~l~~ 198 (304)
T PRK09485 125 SEYRGDYGLSEEELQDFHRPRIEALAEAGADLLACETIP----N--LDEAEALVELLKEEFPGVPAWLSFTLRDGTHISD 198 (304)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHhhCCCCEEEEeccC----C--HHHHHHHHHHHHHhcCCCcEEEEEEeCCCCcCCC
Confidence 123678888888888888866679999998441 2 23355566666644 554445444321
Q ss_pred hHHHHHHHHHHHhcCCCceeEEeeecccccccchhhHHHHHHHc-CCeEEEe
Q 017700 203 PNQLVKIHDYLTARGVPLCSAQVQFSLLSMGENQLEIKNICDSL-GIRLISY 253 (367)
Q Consensus 203 ~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~~-gi~v~a~ 253 (367)
...++.+.+.+... ..++++-++++ .+..-. .+++...+. +..+++|
T Consensus 199 G~~~~~~~~~l~~~-~~~~~iGiNC~--~p~~~~-~~l~~~~~~~~~pl~~~ 246 (304)
T PRK09485 199 GTPLAEAAALLAAS-PQVVAVGVNCT--APELVT-AAIAALRAVTDKPLVVY 246 (304)
T ss_pred CCCHHHHHHHHhcC-CCceEEEecCC--CHHHHH-HHHHHHHhccCCcEEEE
Confidence 12355666654421 23667777765 322222 444444432 4556655
No 102
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=45.51 E-value=2.8e+02 Score=26.41 Aligned_cols=82 Identities=15% Similarity=0.062 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHcCcEeEEeecCC----ChHH-HHHHHHHHHhcCCCceeEEeeeccccc-ccchhhHHHHHHHcCCeEE
Q 017700 178 LALWNGLVAMYEKGLVRAVGVSNY----GPNQ-LVKIHDYLTARGVPLCSAQVQFSLLSM-GENQLEIKNICDSLGIRLI 251 (367)
Q Consensus 178 ~~~~~~L~~l~~~G~ir~iGvS~~----~~~~-l~~~~~~~~~~~~~~~~~q~~~n~~~~-~~~~~~l~~~~~~~gi~v~ 251 (367)
..+.+.++.+++.|.|+.+.+.+- .+.. -.++.+..+..+.. ..+.++.|-... ...-...++.+++.||.+.
T Consensus 153 ~~L~~ll~~l~~i~~v~~iri~Tr~~v~~p~rit~ell~~L~~~g~~-v~i~l~~~h~~el~~~~~~ai~~L~~~Gi~v~ 231 (321)
T TIGR03822 153 RRLGDIMARLAAIDHVKIVRFHTRVPVADPARVTPALIAALKTSGKT-VYVALHANHARELTAEARAACARLIDAGIPMV 231 (321)
T ss_pred HHHHHHHHHHHhCCCccEEEEeCCCcccChhhcCHHHHHHHHHcCCc-EEEEecCCChhhcCHHHHHHHHHHHHcCCEEE
Confidence 457788888888887765555331 1221 13344444444433 334444432110 1122356778888999999
Q ss_pred EecCCCCcc
Q 017700 252 SYSPLGLGM 260 (367)
Q Consensus 252 a~~pl~~G~ 260 (367)
..+++..|.
T Consensus 232 ~q~vLl~gv 240 (321)
T TIGR03822 232 SQSVLLRGV 240 (321)
T ss_pred EEeeEeCCC
Confidence 999998774
No 103
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=45.49 E-value=2.4e+02 Score=25.92 Aligned_cols=112 Identities=11% Similarity=0.045 Sum_probs=63.0
Q ss_pred CCCChHHHHHHHHHHHhhhCCCcEEEEEeccCCCCCCChhHHHHHHHHHHHHH--cCc-EeEEeecCCChHHHHHHHHHH
Q 017700 137 WRLTPGQFVNACRASLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYE--KGL-VRAVGVSNYGPNQLVKIHDYL 213 (367)
Q Consensus 137 ~~~~~~~i~~~l~~sL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~~~~L~~l~~--~G~-ir~iGvS~~~~~~l~~~~~~~ 213 (367)
..++.+.+++.++..++. |++-+ ++-....+...+..+|-.+.++..++ .|+ --..|++..+..+..++.+.+
T Consensus 13 g~iD~~~~~~~i~~l~~~-Gv~gi---~~~GstGE~~~ls~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~i~~a~~a 88 (281)
T cd00408 13 GEVDLDALRRLVEFLIEA-GVDGL---VVLGTTGEAPTLTDEERKEVIEAVVEAVAGRVPVIAGVGANSTREAIELARHA 88 (281)
T ss_pred CCcCHHHHHHHHHHHHHc-CCCEE---EECCCCcccccCCHHHHHHHHHHHHHHhCCCCeEEEecCCccHHHHHHHHHHH
Confidence 355788888888888875 66553 33322222223333333344444433 233 346888887777777777777
Q ss_pred HhcCCCceeEEeeecccccccchhhHHHHH----HHcCCeEEEecC
Q 017700 214 TARGVPLCSAQVQFSLLSMGENQLEIKNIC----DSLGIRLISYSP 255 (367)
Q Consensus 214 ~~~~~~~~~~q~~~n~~~~~~~~~~l~~~~----~~~gi~v~a~~p 255 (367)
+..|.+-.++..++... ..+++++++. ..-+++++.|..
T Consensus 89 ~~~Gad~v~v~pP~y~~---~~~~~~~~~~~~ia~~~~~pi~iYn~ 131 (281)
T cd00408 89 EEAGADGVLVVPPYYNK---PSQEGIVAHFKAVADASDLPVILYNI 131 (281)
T ss_pred HHcCCCEEEECCCcCCC---CCHHHHHHHHHHHHhcCCCCEEEEEC
Confidence 87777644444444332 1222554444 345889988733
No 104
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=45.45 E-value=3.2e+02 Score=27.12 Aligned_cols=151 Identities=14% Similarity=0.134 Sum_probs=85.1
Q ss_pred CHHHHHHHHHHHHHCCCCEE-eCCCCcCCCCCCChHHHHHHHHHhhCCCCCCCCCcE--E---E--EeeccCCCCCCChH
Q 017700 71 MDSQLQQTFNLAVENGINLF-DTADSYGTGRLNGKSEKLLGKFISEIPGQKQVQNNI--V---I--ATKFAAYPWRLTPG 142 (367)
Q Consensus 71 ~~~~a~~~l~~A~~~Gi~~~-DTA~~Yg~~~~~g~sE~~lG~al~~~~~~~~~R~~v--~---i--~tK~~~~~~~~~~~ 142 (367)
+.++=.+-++.|++.|-..+ |-+ ..|+ -..+-.+.|+..+- +--.| | + ..|-+ ...+.+.+
T Consensus 75 d~~~E~~K~~~A~~~GADtiMDLS-tggd------l~~iR~~il~~s~v---pvGTVPiYqa~~~~~~k~~-~~~~mt~d 143 (431)
T PRK13352 75 DIEEELEKAKVAVKYGADTIMDLS-TGGD------LDEIRRAIIEASPV---PVGTVPIYQAAVEAARKYG-SVVDMTED 143 (431)
T ss_pred CHHHHHHHHHHHHHcCCCeEeecc-CCCC------HHHHHHHHHHcCCC---CCcChhHHHHHHHHHhcCC-ChhhCCHH
Confidence 34555566899999998755 444 3343 33333333333221 11111 0 0 01111 22345888
Q ss_pred HHHHHHHHHHhhhCCCcEEEEEeccCCCCCCChhHHHHHHHHHHHHHcCcEeEEeecCCChHHHHHHHHHHHhcCCCcee
Q 017700 143 QFVNACRASLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKGLVRAVGVSNYGPNQLVKIHDYLTARGVPLCS 222 (367)
Q Consensus 143 ~i~~~l~~sL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~~ 222 (367)
.+.+.+++..+ |-+|.+-||.- . ..+.++.++++|++- |+-+.+..-+..++.. +
T Consensus 144 ~~~~~ie~qa~----~GVDfmTiHcG----i------~~~~~~~~~~~~R~~--giVSRGGs~~~~WM~~---n------ 198 (431)
T PRK13352 144 DLFDVIEKQAK----DGVDFMTIHCG----V------TRETLERLKKSGRIM--GIVSRGGSFLAAWMLH---N------ 198 (431)
T ss_pred HHHHHHHHHHH----hCCCEEEEccc----h------hHHHHHHHHhcCCcc--CeecCCHHHHHHHHHH---c------
Confidence 88888888776 45777889953 1 468999999999754 5544455544444332 1
Q ss_pred EEeeecccccccchhhHHHHHHHcCCeEEEecCCCCccc
Q 017700 223 AQVQFSLLSMGENQLEIKNICDSLGIRLISYSPLGLGML 261 (367)
Q Consensus 223 ~q~~~n~~~~~~~~~~l~~~~~~~gi~v~a~~pl~~G~L 261 (367)
..=||+.... + ++++.|++++|.+--.-.|-.|-+
T Consensus 199 --~~ENPlye~f-D-~lLeI~~~yDVtlSLGDglRPG~i 233 (431)
T PRK13352 199 --NKENPLYEHF-D-YLLEILKEYDVTLSLGDGLRPGCI 233 (431)
T ss_pred --CCcCchHHHH-H-HHHHHHHHhCeeeeccCCcCCCcc
Confidence 1123333222 2 899999999999855444444443
No 105
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=45.41 E-value=1.7e+02 Score=27.39 Aligned_cols=102 Identities=11% Similarity=0.021 Sum_probs=56.1
Q ss_pred ChHHHHHHHHHHHhhhCCCcEEEEEeccCCCCCCChhHHHHHHHHHHHHHcCcEeEEeecCCChHHHHHHHHHHHhcCCC
Q 017700 140 TPGQFVNACRASLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKGLVRAVGVSNYGPNQLVKIHDYLTARGVP 219 (367)
Q Consensus 140 ~~~~i~~~l~~sL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~ 219 (367)
+.+ -+..+-+.|.++|+++|.+-.++.|. +.|...+ .++.+..+.+...++...+. .+...++.+.+. +.+
T Consensus 24 s~e-~k~~ia~~L~~~Gv~~IEvgsf~~p~--~~p~~~d-~~e~~~~l~~~~~~~~~~l~-~~~~~ie~A~~~----g~~ 94 (287)
T PRK05692 24 PTA-DKIALIDRLSAAGLSYIEVASFVSPK--WVPQMAD-AAEVMAGIQRRPGVTYAALT-PNLKGLEAALAA----GAD 94 (287)
T ss_pred CHH-HHHHHHHHHHHcCCCEEEeCCCcCcc--ccccccc-HHHHHHhhhccCCCeEEEEe-cCHHHHHHHHHc----CCC
Confidence 443 34556666999999999997444342 1222111 25566666554445555554 366666666553 333
Q ss_pred ceeEEeeecccc--------cccc-----hhhHHHHHHHcCCeEEE
Q 017700 220 LCSAQVQFSLLS--------MGEN-----QLEIKNICDSLGIRLIS 252 (367)
Q Consensus 220 ~~~~q~~~n~~~--------~~~~-----~~~l~~~~~~~gi~v~a 252 (367)
.+.+-++.-+ +..+ -...+++++++|+.+.+
T Consensus 95 --~v~i~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~ 138 (287)
T PRK05692 95 --EVAVFASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRG 138 (287)
T ss_pred --EEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 3333333211 1111 13579999999998863
No 106
>TIGR02534 mucon_cyclo muconate and chloromuconate cycloisomerases. This model encompasses muconate cycloisomerase (EC 5.5.1.1) and chloromuconate cycloisomerase (EC 5.5.1.7), enzymes that often overlap in specificity. It excludes more distantly related proteins such as mandelate racemase (5.1.2.2).
Probab=44.61 E-value=1.4e+02 Score=28.94 Aligned_cols=74 Identities=16% Similarity=0.047 Sum_probs=46.7
Q ss_pred HHHHHHHHHcCcEe-EEeecCCChHHHHHHHHHHHhcCCCceeEEeeecccccccchhhHHHHHHHcCCeEEEecCCCCc
Q 017700 181 WNGLVAMYEKGLVR-AVGVSNYGPNQLVKIHDYLTARGVPLCSAQVQFSLLSMGENQLEIKNICDSLGIRLISYSPLGLG 259 (367)
Q Consensus 181 ~~~L~~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~v~a~~pl~~G 259 (367)
++.+.+|++...+. ..|=|.++..++..+++. ..++++|+.....---..-.++...|+.+|+.++..+.+.++
T Consensus 227 ~~~~~~l~~~~~~pia~dE~~~~~~~~~~~~~~-----~~~d~~~~d~~~~GGi~~~~~i~~lA~~~gi~~~~~~~~~s~ 301 (368)
T TIGR02534 227 REALARLTRRFNVPIMADESVTGPADALAIAKA-----SAADVFALKTTKSGGLLESKKIAAIAEAAGIALYGGTMLEGP 301 (368)
T ss_pred HHHHHHHHHhCCCCEEeCcccCCHHHHHHHHHh-----CCCCEEEEcccccCCHHHHHHHHHHHHHcCCceeeecchhhH
Confidence 56666777765554 566666777776666654 346677776655321112236888999999998876555444
No 107
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=43.81 E-value=2.2e+02 Score=24.87 Aligned_cols=150 Identities=12% Similarity=0.047 Sum_probs=73.3
Q ss_pred CHHHHHHHHHHHHHCCCCEEeCCCCcCCCCCCChHHHHHHHHHhhCCCCCCCCCcEEEEeeccCCCCCCChHHHHHHHHH
Q 017700 71 MDSQLQQTFNLAVENGINLFDTADSYGTGRLNGKSEKLLGKFISEIPGQKQVQNNIVIATKFAAYPWRLTPGQFVNACRA 150 (367)
Q Consensus 71 ~~~~a~~~l~~A~~~Gi~~~DTA~~Yg~~~~~g~sE~~lG~al~~~~~~~~~R~~v~i~tK~~~~~~~~~~~~i~~~l~~ 150 (367)
+.+++.++++.+++.|+...| .| +..+..+++...+ ...++++++.-=.- ..+-++..+..
T Consensus 9 D~~~~~~~v~~~l~~g~~~~~---i~---------~~~l~p~m~~vG~-~w~~~~i~va~e~~------as~~~~~~l~~ 69 (201)
T cd02070 9 DEEETVELVKKALEAGIDPQD---II---------EEGLAPGMDIVGD-KYEEGEIFVPELLM------AADAMKAGLDL 69 (201)
T ss_pred CHHHHHHHHHHHHHcCCCHHH---HH---------HHHHHHHHHHHHH-HHccCCeeHHHHHH------HHHHHHHHHHH
Confidence 568899999999999976443 22 2233333332211 01344454432211 22333444444
Q ss_pred HHhhhCCCc---EEEEEeccCCCCCCChhHHHHHHHHHHHHHcCc-EeEEeecCCChHHHHHHHHHHHhcCCCceeEEee
Q 017700 151 SLARLQIEQ---IGIGQLHWSTANYAPPQELALWNGLVAMYEKGL-VRAVGVSNYGPNQLVKIHDYLTARGVPLCSAQVQ 226 (367)
Q Consensus 151 sL~~Lg~d~---iDl~~lH~~~~~~~~~~~~~~~~~L~~l~~~G~-ir~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~ 226 (367)
....+.... ---+++-.+..+...+ +..=.-.-|+..|. |-++|. +.+.+.+...... ..++++-+.
T Consensus 70 l~~~~~~~~~~~~~~vl~~~~~gd~H~l---G~~~v~~~l~~~G~~vi~lG~-~~p~~~l~~~~~~-----~~~d~v~lS 140 (201)
T cd02070 70 LKPLLGKSKSAKKGKVVIGTVEGDIHDI---GKNLVATMLEANGFEVIDLGR-DVPPEEFVEAVKE-----HKPDILGLS 140 (201)
T ss_pred HHHHHhhcCCCCCCeEEEEecCCccchH---HHHHHHHHHHHCCCEEEECCC-CCCHHHHHHHHHH-----cCCCEEEEe
Confidence 333333211 1123444333222222 22333345667776 567783 4455555544443 456666666
Q ss_pred ecccccccchhhHHHHHHHcCC
Q 017700 227 FSLLSMGENQLEIKNICDSLGI 248 (367)
Q Consensus 227 ~n~~~~~~~~~~l~~~~~~~gi 248 (367)
++.-.....-.++++.+++.+.
T Consensus 141 ~~~~~~~~~~~~~i~~lr~~~~ 162 (201)
T cd02070 141 ALMTTTMGGMKEVIEALKEAGL 162 (201)
T ss_pred ccccccHHHHHHHHHHHHHCCC
Confidence 6544333333467788887753
No 108
>PRK08123 histidinol-phosphatase; Reviewed
Probab=43.23 E-value=2.7e+02 Score=25.63 Aligned_cols=72 Identities=18% Similarity=0.241 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHcCc-------EeEEee-----cCCC-------hHHHHHHHHHHHhcCCCceeEEeeecc--c-ccccch
Q 017700 179 ALWNGLVAMYEKGL-------VRAVGV-----SNYG-------PNQLVKIHDYLTARGVPLCSAQVQFSL--L-SMGENQ 236 (367)
Q Consensus 179 ~~~~~L~~l~~~G~-------ir~iGv-----S~~~-------~~~l~~~~~~~~~~~~~~~~~q~~~n~--~-~~~~~~ 236 (367)
..++.+.++.+.|. +.|+.+ .++. .+.++++.+.+...|..+.+|-..+.- . ..-+..
T Consensus 153 ~Y~~~~~~~~~~~~~~~~~dvlgH~Dli~r~~~~~~~~~~~~~~~~~~~il~~~~~~g~~lEINtsgl~~~~~~~~yP~~ 232 (270)
T PRK08123 153 AYYETVLQSIEADLGPYKPKRIGHITLVRKFQKLFPPDFDEKNKELIEDILALIKKRGYELDFNTAGLRKPYCGEPYPPG 232 (270)
T ss_pred HHHHHHHHHHHhcccccCCCEeecchHHHHhCccCCcccCHHHHHHHHHHHHHHHHcCCEEEEEchhhcCCCCCCCCCcH
Confidence 35566777777663 667663 1221 125677778777777666665432221 1 122223
Q ss_pred hhHHHHHHHcCCeEE
Q 017700 237 LEIKNICDSLGIRLI 251 (367)
Q Consensus 237 ~~l~~~~~~~gi~v~ 251 (367)
.+++.|++.|+.++
T Consensus 233 -~il~~~~e~g~~it 246 (270)
T PRK08123 233 -EIITLAKKLGIPLV 246 (270)
T ss_pred -HHHHHHHHcCCCEE
Confidence 78999999998865
No 109
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=43.13 E-value=2.9e+02 Score=25.96 Aligned_cols=110 Identities=13% Similarity=0.067 Sum_probs=61.8
Q ss_pred CCCChHHHHHHHHHHHhhhCCCcEEEEEeccCCCCCCChhHHHHHHHHHHHHH--cCcEe-EEeecCCChHHHHHHHHHH
Q 017700 137 WRLTPGQFVNACRASLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYE--KGLVR-AVGVSNYGPNQLVKIHDYL 213 (367)
Q Consensus 137 ~~~~~~~i~~~l~~sL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~~~~L~~l~~--~G~ir-~iGvS~~~~~~l~~~~~~~ 213 (367)
.+.+.+.+++-++..+. -|+ |-+++-.-......+..+|-.+.++..++ .|++- -.|++. +..+..++.+.+
T Consensus 23 g~iD~~~l~~li~~l~~-~Gv---~Gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~-~t~~~i~~~~~a 97 (303)
T PRK03620 23 GSFDEAAYREHLEWLAP-YGA---AALFAAGGTGEFFSLTPDEYSQVVRAAVETTAGRVPVIAGAGG-GTAQAIEYAQAA 97 (303)
T ss_pred CCcCHHHHHHHHHHHHH-cCC---CEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecCC-CHHHHHHHHHHH
Confidence 45688888888887766 354 44555433223333333333444444433 45543 347875 666666666677
Q ss_pred HhcCCCceeEEeeecccccccchhhHHH----HHHHcCCeEEEec
Q 017700 214 TARGVPLCSAQVQFSLLSMGENQLEIKN----ICDSLGIRLISYS 254 (367)
Q Consensus 214 ~~~~~~~~~~q~~~n~~~~~~~~~~l~~----~~~~~gi~v~a~~ 254 (367)
+..|.+-.++..+|... ..++++++ .|..-+++|+.|.
T Consensus 98 ~~~Gadav~~~pP~y~~---~~~~~i~~~f~~va~~~~lpi~lYn 139 (303)
T PRK03620 98 ERAGADGILLLPPYLTE---APQEGLAAHVEAVCKSTDLGVIVYN 139 (303)
T ss_pred HHhCCCEEEECCCCCCC---CCHHHHHHHHHHHHHhCCCCEEEEc
Confidence 77777655555554321 12224443 4555689999997
No 110
>COG3653 N-acyl-D-aspartate/D-glutamate deacylase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=42.30 E-value=3.7e+02 Score=26.97 Aligned_cols=223 Identities=18% Similarity=0.153 Sum_probs=110.8
Q ss_pred HHHHHHHHHHHCCCCEEe--------CCCCcCCCCCCChHHHHHHHHHhhCCCCCCCCCcEEEEeeccCCCCCCChHHHH
Q 017700 74 QLQQTFNLAVENGINLFD--------TADSYGTGRLNGKSEKLLGKFISEIPGQKQVQNNIVIATKFAAYPWRLTPGQFV 145 (367)
Q Consensus 74 ~a~~~l~~A~~~Gi~~~D--------TA~~Yg~~~~~g~sE~~lG~al~~~~~~~~~R~~v~i~tK~~~~~~~~~~~~i~ 145 (367)
...++++.|+|+|.--+- |+..|.+.-..-..+++.+.++.-.. .+..|.-+|.... ....+.
T Consensus 183 aMaallreAlEaGalGmS~~~~~~~~tgd~~p~~~l~~~t~el~~la~~va~----ag~~iLqst~d~~-----egaa~L 253 (579)
T COG3653 183 AMAALLREALEAGALGMSMDAAIDKLTGDRYPSRALPFATWELRRLAISVAR----AGGRILQSTHDRD-----EGAAAL 253 (579)
T ss_pred HHHHHHHHHHhccccccchhhhcccccccccCCcccCcchHHHHHHHHHHHH----hcCceeEeecccc-----chHHHH
Confidence 357899999999876665 77777663333234667776664321 2344555554421 456677
Q ss_pred HHHHHHHhhh-CCCcEEEEEeccCCCCCCChhHHHHHHHHHHHHHcCcEeEEeecCCChHHHHHHHHHHHhcCCCceeEE
Q 017700 146 NACRASLARL-QIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKGLVRAVGVSNYGPNQLVKIHDYLTARGVPLCSAQ 224 (367)
Q Consensus 146 ~~l~~sL~~L-g~d~iDl~~lH~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q 224 (367)
+.++++.+.- +...+-+.+.|..+. .-..+|++.+....++++..+ |.++-+.-
T Consensus 254 ~~l~~a~ri~~R~~~vr~v~s~~a~a---------------------g~~n~~~a~~~lgl~~kaq~~----G~pVg~~~ 308 (579)
T COG3653 254 EALLEASRIGNRRKGVRMVMSHSADA---------------------GSMNWGVAVFGLGLIEKAQLL----GSPVGFDH 308 (579)
T ss_pred HHHHHHHHhcCcccCceEEEeccccc---------------------cccchhhhhhccchHHHHHHh----CCcceeee
Confidence 7777777776 445677888885432 122444444444444443332 23332222
Q ss_pred eee--cccccccchhhHHHHHHHcCCeEEE---ecCCCCcccc-CCCCCCCCCC-Chhhhhhhh------hccChHHHH-
Q 017700 225 VQF--SLLSMGENQLEIKNICDSLGIRLIS---YSPLGLGMLT-GKYTPSKLPR-GPRALLFRQ------ILPGLKPLL- 290 (367)
Q Consensus 225 ~~~--n~~~~~~~~~~l~~~~~~~gi~v~a---~~pl~~G~L~-~~~~~~~~~~-~~~~~~~~~------~~~~~~~~~- 290 (367)
.+| |++... -.+++.++.|.+-.+ .-++....|. .+-..+++.. ...-..|.+ +.+...++.
T Consensus 309 ~p~~a~~ys~~----~~~p~~~e~g~~~~~~~lrD~~~R~~l~~d~~~r~~f~~~~~~~~~W~n~~~vi~~~pd~p~~ag 384 (579)
T COG3653 309 YPYTAELYSDG----IDLPVFEEFGAGTAALHLRDQLQRNELLADRSYRDSFRRIKLGPSLWHNHDIVITESPDKPELAG 384 (579)
T ss_pred cccccchhccC----CcchhhhhcccchhhhhhcCHHHHHHHHhhhhhcchhhhcccccccccccceeEEeCCCCchhhh
Confidence 222 222111 234444544442211 1111100000 0000000000 000000111 223332322
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCC------eeecCCCCHHHHHHHHhc
Q 017700 291 RSLKEIAERRGKTIPQVAINWCICKGT------IPIPGVKSVKQVEENLGA 335 (367)
Q Consensus 291 ~~l~~la~~~g~t~~qlal~~~l~~~~------~vi~g~~~~e~l~enl~a 335 (367)
+.+++||.+.|..|.++.+- +|.+.. ..|+---+++++...++.
T Consensus 385 Ksl~aIAd~~grdp~da~lD-~Lardg~~~~~~~~i~an~s~e~l~rilah 434 (579)
T COG3653 385 KSLKAIADERGRDPLDAFLD-VLARDGERAGRWTTIVANMSPEDLNRILAH 434 (579)
T ss_pred hhHHHHHHHhCCCHHHHHHH-HHHhcccccceeEEEEecCCcchHHHHhcC
Confidence 68999999999999999888 554432 356666677777776654
No 111
>COG2200 Rtn c-di-GMP phosphodiesterase class I (EAL domain) [Signal transduction mechanisms]
Probab=42.11 E-value=2.5e+02 Score=25.65 Aligned_cols=133 Identities=16% Similarity=0.164 Sum_probs=80.3
Q ss_pred HHHHHHHHhhCCCCCCCCC--cEEEEeeccCCCCCCChHHHHHHHHHHHhhhCCCcEEEEEeccCCCCCCChhHHHHHHH
Q 017700 106 EKLLGKFISEIPGQKQVQN--NIVIATKFAAYPWRLTPGQFVNACRASLARLQIEQIGIGQLHWSTANYAPPQELALWNG 183 (367)
Q Consensus 106 E~~lG~al~~~~~~~~~R~--~v~i~tK~~~~~~~~~~~~i~~~l~~sL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~~~~ 183 (367)
..++.++++.+.. .+. .+.++..+.+. .+....+...+.+.+++.+++.- -+.+- ..+.......+.+...
T Consensus 69 ~~v~~~a~~~~~~---~~~~~~~~l~iNis~~--~l~~~~~~~~l~~~l~~~~~~~~-~l~lE-itE~~~~~~~~~~~~~ 141 (256)
T COG2200 69 RWVLEEACRQLRT---WPRAGPLRLAVNLSPV--QLRSPGLVDLLLRLLARLGLPPH-RLVLE-ITESALIDDLDTALAL 141 (256)
T ss_pred HHHHHHHHHHHHh---hhhcCCceEEEEcCHH--HhCCchHHHHHHHHHHHhCCCcc-eEEEE-EeCchhhcCHHHHHHH
Confidence 5666677666431 122 37777777542 12234566677788888776532 11121 1111111122357889
Q ss_pred HHHHHHcCcEeEEeecCCChH--HHHHHHHHHHhcCCCceeEEeeecccccccc-------hhhHHHHHHHcCCeEEEe
Q 017700 184 LVAMYEKGLVRAVGVSNYGPN--QLVKIHDYLTARGVPLCSAQVQFSLLSMGEN-------QLEIKNICDSLGIRLISY 253 (367)
Q Consensus 184 L~~l~~~G~ir~iGvS~~~~~--~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~-------~~~l~~~~~~~gi~v~a~ 253 (367)
++.|++.|- .|.+..|+.. .+..+.+ .+++++-+.-+....-.. -..++..|++.|+.|++-
T Consensus 142 l~~L~~~G~--~ialDDFGtG~ssl~~L~~------l~~d~iKID~~fi~~i~~~~~~~~iv~~iv~la~~l~~~vvaE 212 (256)
T COG2200 142 LRQLRELGV--RIALDDFGTGYSSLSYLKR------LPPDILKIDRSFVRDLETDARDQAIVRAIVALAHKLGLTVVAE 212 (256)
T ss_pred HHHHHHCCC--eEEEECCCCCHHHHHHHhh------CCCCeEEECHHHHhhcccCcchHHHHHHHHHHHHHCCCEEEEe
Confidence 999999995 6777777654 3555544 578888777776643221 136899999999999984
No 112
>PF07287 DUF1446: Protein of unknown function (DUF1446); InterPro: IPR010839 This family consists of several bacterial and plant proteins of around 400 residues in length. The function of this family is unknown.
Probab=41.92 E-value=1.4e+02 Score=29.10 Aligned_cols=16 Identities=19% Similarity=0.335 Sum_probs=8.3
Q ss_pred hHHHHHHHcCCeEEEe
Q 017700 238 EIKNICDSLGIRLISY 253 (367)
Q Consensus 238 ~l~~~~~~~gi~v~a~ 253 (367)
.+++.|+++||.|+.-
T Consensus 62 ~~L~~~~~~gIkvI~N 77 (362)
T PF07287_consen 62 PLLPAAAEKGIKVITN 77 (362)
T ss_pred HHHHHHHhCCCCEEEe
Confidence 4455555555555543
No 113
>COG2949 SanA Uncharacterized membrane protein [Function unknown]
Probab=41.88 E-value=1e+02 Score=27.45 Aligned_cols=99 Identities=13% Similarity=0.072 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHhhhCCCcEEEEEeccCCCCCCChhHHHHHHHHHHHHHcCcE------eEEeecCCChHHHHHHHHHHHh
Q 017700 142 GQFVNACRASLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKGLV------RAVGVSNYGPNQLVKIHDYLTA 215 (367)
Q Consensus 142 ~~i~~~l~~sL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~~~~L~~l~~~G~i------r~iGvS~~~~~~l~~~~~~~~~ 215 (367)
......++..-+.-.-.+++-++|-.. + ......|.+.-.++|.+.|.- -|-|+++ ++.+.+.-+.
T Consensus 76 ~yy~~Ri~aA~~ly~~gKV~~LLlSGD--N-~~~sYnEp~tM~kdL~~~GVp~~~i~lDyAGFrT-----LDSvvRA~kV 147 (235)
T COG2949 76 RYYTYRIDAAIALYKAGKVNYLLLSGD--N-ATVSYNEPRTMRKDLIAAGVPAKNIFLDYAGFRT-----LDSVVRARKV 147 (235)
T ss_pred HhHHHHHHHHHHHHhcCCeeEEEEecC--C-CcccccchHHHHHHHHHcCCCHHHeeecccCccH-----HHHHHHHHHH
Confidence 345566666666666778888888853 2 122234467777888888862 3445543 4445554443
Q ss_pred cCC-CceeEEeeecccccccchhhHHHHHHHcCCeEEEecC
Q 017700 216 RGV-PLCSAQVQFSLLSMGENQLEIKNICDSLGIRLISYSP 255 (367)
Q Consensus 216 ~~~-~~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~v~a~~p 255 (367)
++. .+.+ +.+..-.++.+-.|+.+||.-+++..
T Consensus 148 F~~~~ftI-------ItQ~FHceRAlfiA~~~gIdAic~~a 181 (235)
T COG2949 148 FGTNDFTI-------ITQRFHCERALFIARQMGIDAICFAA 181 (235)
T ss_pred cCcCcEEE-------EecccccHHHHHHHHHhCCceEEecC
Confidence 442 2333 33322233778899999999888643
No 114
>PRK09613 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=41.80 E-value=2.1e+02 Score=28.96 Aligned_cols=105 Identities=14% Similarity=0.172 Sum_probs=61.1
Q ss_pred CChHHHHHHHHHHHhhhCCCcEEEEEeccCCCCCCChhHHHHHHHHHHHHH----cCcEeEEeecCC--ChHHHHHHHHH
Q 017700 139 LTPGQFVNACRASLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYE----KGLVRAVGVSNY--GPNQLVKIHDY 212 (367)
Q Consensus 139 ~~~~~i~~~l~~sL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~~~~L~~l~~----~G~ir~iGvS~~--~~~~l~~~~~~ 212 (367)
++.++|.+.++. +...|...+-|+.=..| ... ..+.+.+.++.+++ .|.++.++|+-. +.+++..+.+
T Consensus 115 Ls~EEI~~ea~~-~~~~G~~~i~LvsGe~p--~~~--~~eyi~e~i~~I~~~~~~~g~i~~v~inig~lt~eey~~Lke- 188 (469)
T PRK09613 115 LTQEEIREEVKA-LEDMGHKRLALVAGEDP--PNC--DIEYILESIKTIYSTKHGNGEIRRVNVNIAPTTVENYKKLKE- 188 (469)
T ss_pred CCHHHHHHHHHH-HHHCCCCEEEEEeCCCC--CCC--CHHHHHHHHHHHHHhccccCcceeeEEEeecCCHHHHHHHHH-
Confidence 478899999875 57799888766421211 112 23446677777775 577887777532 3344444444
Q ss_pred HHhcCCC-ceeEEeeecc-----cccc------cchhhHHHHHHHcCCeEEE
Q 017700 213 LTARGVP-LCSAQVQFSL-----LSMG------ENQLEIKNICDSLGIRLIS 252 (367)
Q Consensus 213 ~~~~~~~-~~~~q~~~n~-----~~~~------~~~~~l~~~~~~~gi~v~a 252 (367)
.|+. +.++|--||. +++. ..+...++.+++.|+.-+.
T Consensus 189 ---aGv~~~~l~qETY~~ety~~~hp~g~k~~y~~Rl~t~~rA~~aGi~~Vg 237 (469)
T PRK09613 189 ---AGIGTYQLFQETYHKPTYEKMHPSGPKSDYDWRLTAMDRAMEAGIDDVG 237 (469)
T ss_pred ---cCCCEEEeccccCCHHHHHhcCCCCCCCCHHHHHHHHHHHHHcCCCeeC
Confidence 3543 5556666542 1111 1124568888888987433
No 115
>COG4130 Predicted sugar epimerase [Carbohydrate transport and metabolism]
Probab=41.66 E-value=1.4e+02 Score=26.82 Aligned_cols=77 Identities=18% Similarity=0.271 Sum_probs=44.9
Q ss_pred HHHHhcCCCceeEE--eeecccccc--cchhhHHHHHHHcCCeEEEecCCCCccccCCCCCCCCCCChhhhhhhhhccCh
Q 017700 211 DYLTARGVPLCSAQ--VQFSLLSMG--ENQLEIKNICDSLGIRLISYSPLGLGMLTGKYTPSKLPRGPRALLFRQILPGL 286 (367)
Q Consensus 211 ~~~~~~~~~~~~~q--~~~n~~~~~--~~~~~l~~~~~~~gi~v~a~~pl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (367)
..+++.|+.+..+. -+||.++.. .+-.++.++++..|-.-+.+.|+..|.-.+.. .+ .+..
T Consensus 56 a~Aek~Gl~IvSINAlypFn~wt~~~~a~a~~la~yA~acGA~aLvlcPlNd~s~~~~~----vr-----------~~~l 120 (272)
T COG4130 56 ALAEKAGLTIVSINALYPFNEWTEERVAEARGLADYAAACGAKALVLCPLNDGSWPGTA----VR-----------REDL 120 (272)
T ss_pred HHHHHcCcEEEEeeccccccccChHHHHHHHHHHHHHHhcCCceEEEEeccCCCCCCcc----cc-----------hHHH
Confidence 34455565543332 234444322 12247899999999999999999875321110 11 1223
Q ss_pred HHHHHHHHHHHHHhCC
Q 017700 287 KPLLRSLKEIAERRGK 302 (367)
Q Consensus 287 ~~~~~~l~~la~~~g~ 302 (367)
...+++|+.|.+++|+
T Consensus 121 v~AlkaLkpil~~~gi 136 (272)
T COG4130 121 VEALKALKPILDEYGI 136 (272)
T ss_pred HHHHHHhhHHHHHhCc
Confidence 3455788888888874
No 116
>PRK14461 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=41.59 E-value=3.2e+02 Score=26.70 Aligned_cols=142 Identities=10% Similarity=0.002 Sum_probs=82.5
Q ss_pred HHHHHHHhhCCC---CCCCCCcEEEEeeccCCCCCCChHHHHHHHHHHHhhhCCCcEEEEEeccCCCCC--------CCh
Q 017700 107 KLLGKFISEIPG---QKQVQNNIVIATKFAAYPWRLTPGQFVNACRASLARLQIEQIGIGQLHWSTANY--------APP 175 (367)
Q Consensus 107 ~~lG~al~~~~~---~~~~R~~v~i~tK~~~~~~~~~~~~i~~~l~~sL~~Lg~d~iDl~~lH~~~~~~--------~~~ 175 (367)
+-+-++++-+.+ -+.-...+.|+|-. -...|++-.++.+ + .==.+.||.|++.. ...
T Consensus 185 dnV~~ai~il~d~~g~~is~R~ITVST~G-------ivp~I~~la~~~~---~--v~LAiSLHA~~~e~R~~lmPin~~y 252 (371)
T PRK14461 185 DRWWQAVERLHDPQGFNLGARSMTVSTVG-------LVKGIRRLANERL---P--INLAISLHAPDDALRSELMPVNRRY 252 (371)
T ss_pred HHHHHHHHHhcCccccCcCCCceEEEeec-------chhHHHHHHhccc---C--ceEEEEeCCCCHHHHHHhcCcccCC
Confidence 335556665432 11224457777763 1334444443321 1 11137899886421 112
Q ss_pred hHHHHHHHHHHHHH-cCc---EeEEeec--CCChHHHHHHHHHHHhcC----CCceeEEeeecccccccc----h---hh
Q 017700 176 QELALWNGLVAMYE-KGL---VRAVGVS--NYGPNQLVKIHDYLTARG----VPLCSAQVQFSLLSMGEN----Q---LE 238 (367)
Q Consensus 176 ~~~~~~~~L~~l~~-~G~---ir~iGvS--~~~~~~l~~~~~~~~~~~----~~~~~~q~~~n~~~~~~~----~---~~ 238 (367)
..+++++++.+..+ .|+ +.|+=+. |.+.++.+++.+.++... .+.-+|-++||+...... . ..
T Consensus 253 pl~eLl~a~~~y~~~t~rrit~EYvLi~gvNDs~e~A~~L~~llk~~~~~~~l~~~VNLIp~Np~~~~~~~~ps~~~i~~ 332 (371)
T PRK14461 253 PIADLMAATRDYIAKTRRRVSFEYVLLQGKNDHPEQAAALARLLRGEAPPGPLLVHVNLIPWNPVPGTPLGRSERERVTT 332 (371)
T ss_pred CHHHHHHHHHHHHHhhCCEEEEEEEEECCCCCCHHHHHHHHHHHcCCccccCCceEEEEecCCCCCCCCCCCCCHHHHHH
Confidence 35668888887765 343 2333333 557788888888876421 157899999999753211 1 35
Q ss_pred HHHHHHHcCCeEEEecCCCCcc
Q 017700 239 IKNICDSLGIRLISYSPLGLGM 260 (367)
Q Consensus 239 l~~~~~~~gi~v~a~~pl~~G~ 260 (367)
+.+..+++||.+......|.-+
T Consensus 333 F~~~L~~~gi~vtiR~s~G~DI 354 (371)
T PRK14461 333 FQRILTDYGIPCTVRVERGVEI 354 (371)
T ss_pred HHHHHHHCCceEEEeCCCCcCh
Confidence 6778889999999988776543
No 117
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=41.24 E-value=3.3e+02 Score=27.05 Aligned_cols=118 Identities=11% Similarity=0.056 Sum_probs=56.5
Q ss_pred CCCCcCCCCCCChHHHHHHHHHhhCCCCCCCCCcEEEEeeccCCCCCCChHHHHHHHHHHHhhhCC-CcEEEEEeccCCC
Q 017700 92 TADSYGTGRLNGKSEKLLGKFISEIPGQKQVQNNIVIATKFAAYPWRLTPGQFVNACRASLARLQI-EQIGIGQLHWSTA 170 (367)
Q Consensus 92 TA~~Yg~~~~~g~sE~~lG~al~~~~~~~~~R~~v~i~tK~~~~~~~~~~~~i~~~l~~sL~~Lg~-d~iDl~~lH~~~~ 170 (367)
..-.||. |+-|-++++...+. .+.+=++|.|-+.+. .--+++..-+++.-++... ..+.++.++.|+.
T Consensus 63 ~d~V~Gg-------~~~L~~ai~~~~~~-~~p~~I~v~ttC~~~---iiGdDi~~v~~~~~~~~~~~~~~~vi~v~tpgf 131 (435)
T cd01974 63 DAAVFGG-------QNNLIDGLKNAYAV-YKPDMIAVSTTCMAE---VIGDDLNAFIKNAKNKGSIPADFPVPFANTPSF 131 (435)
T ss_pred CceEECc-------HHHHHHHHHHHHHh-cCCCEEEEeCCchHh---hhhccHHHHHHHHHHhccCCCCCeEEEecCCCC
Confidence 3456775 77777777664220 123335666665321 1223333333333233211 1478899987743
Q ss_pred CCCCh-hHHHHHHHHH-HHH-------HcCcEeEEeecCCChHHHHHHHHHHHhcCCCc
Q 017700 171 NYAPP-QELALWNGLV-AMY-------EKGLVRAVGVSNYGPNQLVKIHDYLTARGVPL 220 (367)
Q Consensus 171 ~~~~~-~~~~~~~~L~-~l~-------~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~ 220 (367)
..... ..+.++++|- .+. +.+.|.=||-.+.....+.++.+..+..|+.+
T Consensus 132 ~gs~~~G~~~a~~al~~~l~~~~~~~~~~~~VNli~~~~~~~d~~~el~~lL~~~Gl~~ 190 (435)
T cd01974 132 VGSHITGYDNMVKGILTHLTEGSGGAGKNGKLNIIPGFDTYAGNMREIKRLLELMGVDY 190 (435)
T ss_pred ccCHHHHHHHHHHHHHHHHhcccCCCCCCCeEEEECCCCCCcchHHHHHHHHHHcCCCE
Confidence 22111 2222344443 222 23456666522222223667777777677654
No 118
>PLN02363 phosphoribosylanthranilate isomerase
Probab=41.01 E-value=98 Score=28.54 Aligned_cols=83 Identities=16% Similarity=0.098 Sum_probs=47.8
Q ss_pred EeeccCCCCCCChHHHHHHHHHHHhhhCCCcEEEEEeccCCCCCCChhHHHHHHHHHHHHHcCcEeEEeec-CCChHHHH
Q 017700 129 ATKFAAYPWRLTPGQFVNACRASLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKGLVRAVGVS-NYGPNQLV 207 (367)
Q Consensus 129 ~tK~~~~~~~~~~~~i~~~l~~sL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvS-~~~~~~l~ 207 (367)
..|++.- .+.++++.+. ++|.|+|=+++.... +.+.. .+ ....+.+......++.+||. |-+.+.+.
T Consensus 48 ~VKICGi---t~~eda~~a~-----~~GaD~iGfIf~~~S-pR~Vs--~e-~a~~I~~~l~~~~~~~VgVfv~~~~~~I~ 115 (256)
T PLN02363 48 LVKMCGI---TSARDAAMAV-----EAGADFIGMILWPKS-KRSIS--LS-VAKEISQVAREGGAKPVGVFVDDDANTIL 115 (256)
T ss_pred eEEECCC---CcHHHHHHHH-----HcCCCEEEEecCCCC-CCcCC--HH-HHHHHHHhccccCccEEEEEeCCCHHHHH
Confidence 3566543 1566666554 489999998754422 12222 22 23333333332236679985 66666666
Q ss_pred HHHHHHHhcCCCceeEEeeec
Q 017700 208 KIHDYLTARGVPLCSAQVQFS 228 (367)
Q Consensus 208 ~~~~~~~~~~~~~~~~q~~~n 228 (367)
++.+. ..++++|++-.
T Consensus 116 ~~~~~-----~~ld~VQLHG~ 131 (256)
T PLN02363 116 RAADS-----SDLELVQLHGN 131 (256)
T ss_pred HHHHh-----cCCCEEEECCC
Confidence 66654 67899999753
No 119
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=40.84 E-value=1.4e+02 Score=25.54 Aligned_cols=87 Identities=20% Similarity=0.181 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHhcCCCceeEEeeeccccccc--------------chhhHHHHHHHcCCeEEEecCCCCccccCCCCCCC
Q 017700 204 NQLVKIHDYLTARGVPLCSAQVQFSLLSMGE--------------NQLEIKNICDSLGIRLISYSPLGLGMLTGKYTPSK 269 (367)
Q Consensus 204 ~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~--------------~~~~l~~~~~~~gi~v~a~~pl~~G~L~~~~~~~~ 269 (367)
..++++.+.+++.++.+.......+...... .-...++.|+..|+..+...+-..+...
T Consensus 27 ~~~~~~~~~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~a~~lg~~~i~~~~g~~~~~~------- 99 (213)
T PF01261_consen 27 DEAEELRRLLEDYGLKIASLHPPTNFWSPDEENGSANDEREEALEYLKKAIDLAKRLGAKYIVVHSGRYPSGP------- 99 (213)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEEESSSCTGTTSTTSSSHHHHHHHHHHHHHHHHHHHTBSEEEEECTTESSST-------
T ss_pred HHHHHHHHHHHHcCCeEEEEecccccccccccccCcchhhHHHHHHHHHHHHHHHHhCCCceeecCccccccc-------
Confidence 3455666666666665544444444333210 1136789999999998876644210000
Q ss_pred CCCChhhhhhhhhccChHHHHHHHHHHHHHhCCC
Q 017700 270 LPRGPRALLFRQILPGLKPLLRSLKEIAERRGKT 303 (367)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~g~t 303 (367)
... .....+...+.++.+.++|+++|++
T Consensus 100 --~~~----~~~~~~~~~~~l~~l~~~a~~~gv~ 127 (213)
T PF01261_consen 100 --EDD----TEENWERLAENLRELAEIAEEYGVR 127 (213)
T ss_dssp --TSS----HHHHHHHHHHHHHHHHHHHHHHTSE
T ss_pred --CCC----HHHHHHHHHHHHHHHHhhhhhhcce
Confidence 000 1112333444556777777777753
No 120
>PF13378 MR_MLE_C: Enolase C-terminal domain-like; PDB: 3FCP_B 3P0W_D 3VFC_A 3VDG_A 3FJ4_B 3CT2_B 3DGB_A 3V3W_A 3V4B_A 3NO1_E ....
Probab=40.82 E-value=52 Score=25.58 Aligned_cols=54 Identities=13% Similarity=0.140 Sum_probs=33.1
Q ss_pred CCChHHHHHHHHHHHhcCCCceeEEeeecccccccchhhHHHHHHHcCCeEEEecCCCCc
Q 017700 200 NYGPNQLVKIHDYLTARGVPLCSAQVQFSLLSMGENQLEIKNICDSLGIRLISYSPLGLG 259 (367)
Q Consensus 200 ~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~v~a~~pl~~G 259 (367)
.++...+..+++. -.++++|+...-+---.+-.++.+.|+++|+.+...+. .++
T Consensus 4 ~~~~~~~~~li~~-----~a~d~~~~~~~~~GGit~~~~i~~~A~~~gi~~~~h~~-~~~ 57 (111)
T PF13378_consen 4 LFSLHDFRRLIEA-----GAVDIVQIDPTRCGGITEALRIAALAEAHGIPVMPHSM-ESG 57 (111)
T ss_dssp SSSHHHHHHHHHT-----TSCSEEEEBHHHHTSHHHHHHHHHHHHHTT-EEEEBSS-SSH
T ss_pred CCCHHHHHHHHHc-----CCCCEEEeCchhcCCHHHHHHHHHHHHHhCCCEEecCC-CCc
Confidence 3455666666553 34677777655442112223788899999999998886 544
No 121
>COG0008 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=40.56 E-value=1.2e+02 Score=30.66 Aligned_cols=70 Identities=21% Similarity=0.284 Sum_probs=50.0
Q ss_pred ChHHHHHHHHHHHhhhCCCcEEEEEeccCCC-CCCChhHHHHHHHHHHHHHcCcEeEEeecCCChHHHHHHHHHHHhcCC
Q 017700 140 TPGQFVNACRASLARLQIEQIGIGQLHWSTA-NYAPPQELALWNGLVAMYEKGLVRAVGVSNYGPNQLVKIHDYLTARGV 218 (367)
Q Consensus 140 ~~~~i~~~l~~sL~~Lg~d~iDl~~lH~~~~-~~~~~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~ 218 (367)
+......++.+.|+-||+ +|... .......+...+.+++|+++|+ ++ ++..+.++++++.+.....+-
T Consensus 56 ~~~e~~~~I~~~L~WLGl--------~wde~~~~QS~r~~~Y~~~~~~Li~~G~--AY-~c~ct~eele~~R~~~~~~g~ 124 (472)
T COG0008 56 ETPEAEDAILEDLEWLGL--------DWDEGPYYQSERFDIYYEYAEKLIEKGK--AY-VCYCTPEELEEMRELRGALGE 124 (472)
T ss_pred CCHHHHHHHHHHHHhcCC--------CCCCceeehhhhHHHHHHHHHHHHHCCC--eE-EecCCHHHHHHHHHHHhhcCC
Confidence 455788899999999995 44431 2233344557789999999999 44 667788888888887666654
Q ss_pred Cc
Q 017700 219 PL 220 (367)
Q Consensus 219 ~~ 220 (367)
+|
T Consensus 125 ~p 126 (472)
T COG0008 125 PP 126 (472)
T ss_pred CC
Confidence 34
No 122
>PRK00208 thiG thiazole synthase; Reviewed
Probab=40.31 E-value=3e+02 Score=25.32 Aligned_cols=106 Identities=11% Similarity=0.039 Sum_probs=64.5
Q ss_pred CChHHHHHHHHHHHhhhCCCcEEEEEeccCCCCCCChhHHHHHHHHHHHHHcCcEeEEeecCCChHHHHHHHHHHHhcCC
Q 017700 139 LTPGQFVNACRASLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKGLVRAVGVSNYGPNQLVKIHDYLTARGV 218 (367)
Q Consensus 139 ~~~~~i~~~l~~sL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~ 218 (367)
.+.++..+-.+-..+-+++++|-|=.+..+ .+.--+..+++++.++|.++|.+-- =+++-++...+++.+.
T Consensus 73 ~ta~eAv~~a~lare~~~~~~iKlEVi~d~--~~llpd~~~tv~aa~~L~~~Gf~vl-pyc~~d~~~ak~l~~~------ 143 (250)
T PRK00208 73 RTAEEAVRTARLAREALGTNWIKLEVIGDD--KTLLPDPIETLKAAEILVKEGFVVL-PYCTDDPVLAKRLEEA------ 143 (250)
T ss_pred CCHHHHHHHHHHHHHHhCCCeEEEEEecCC--CCCCcCHHHHHHHHHHHHHCCCEEE-EEeCCCHHHHHHHHHc------
Confidence 378888888888889999999988777643 3233345679999999999998654 1344445544444443
Q ss_pred CceeEEeeecccc--cccchhhHHHHHHH-cCCeEEEe
Q 017700 219 PLCSAQVQFSLLS--MGENQLEIKNICDS-LGIRLISY 253 (367)
Q Consensus 219 ~~~~~q~~~n~~~--~~~~~~~l~~~~~~-~gi~v~a~ 253 (367)
.+++++.-=.++- +...+.++++...+ .++.|++-
T Consensus 144 G~~~vmPlg~pIGsg~gi~~~~~i~~i~e~~~vpVIve 181 (250)
T PRK00208 144 GCAAVMPLGAPIGSGLGLLNPYNLRIIIEQADVPVIVD 181 (250)
T ss_pred CCCEeCCCCcCCCCCCCCCCHHHHHHHHHhcCCeEEEe
Confidence 3344422112221 11111245666666 47888775
No 123
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=40.16 E-value=1.8e+02 Score=26.20 Aligned_cols=75 Identities=15% Similarity=0.171 Sum_probs=49.5
Q ss_pred CCHHHHHHHHHHHHHCCCCEEeCCCCcCCCCCCChHHHHHHHHHhhCCCCCCCCCcEEEEeeccCCCCCCChHHHHHHHH
Q 017700 70 SMDSQLQQTFNLAVENGINLFDTADSYGTGRLNGKSEKLLGKFISEIPGQKQVQNNIVIATKFAAYPWRLTPGQFVNACR 149 (367)
Q Consensus 70 ~~~~~a~~~l~~A~~~Gi~~~DTA~~Yg~~~~~g~sE~~lG~al~~~~~~~~~R~~v~i~tK~~~~~~~~~~~~i~~~l~ 149 (367)
+++++..++.+.+.+.|..|+=|+.-|+. +|.+-+.+....+.. +.++-|-.-.|.. +.++..+-++
T Consensus 133 L~~e~i~~a~~~~~~agadfIKTsTG~~~---~gat~~~v~~m~~~~------~~~~~IKasGGIr----t~~~a~~~i~ 199 (221)
T PRK00507 133 LTDEEKVKACEIAKEAGADFVKTSTGFST---GGATVEDVKLMRETV------GPRVGVKASGGIR----TLEDALAMIE 199 (221)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEcCCCCCC---CCCCHHHHHHHHHHh------CCCceEEeeCCcC----CHHHHHHHHH
Confidence 56788899999999999999999999864 366666666655442 2233332222333 6666766666
Q ss_pred HHHhhhCC
Q 017700 150 ASLARLQI 157 (367)
Q Consensus 150 ~sL~~Lg~ 157 (367)
---.++||
T Consensus 200 aGA~riGt 207 (221)
T PRK00507 200 AGATRLGT 207 (221)
T ss_pred cCcceEcc
Confidence 65556665
No 124
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=39.64 E-value=3.1e+02 Score=25.36 Aligned_cols=175 Identities=15% Similarity=0.061 Sum_probs=87.2
Q ss_pred CCHHHHHHHHHHHHHCCCCEEeCCCCcCC---CC-CCChHHHHHHHHHhhCCCCCCCCCcEEEEeeccC-CCCCCChHHH
Q 017700 70 SMDSQLQQTFNLAVENGINLFDTADSYGT---GR-LNGKSEKLLGKFISEIPGQKQVQNNIVIATKFAA-YPWRLTPGQF 144 (367)
Q Consensus 70 ~~~~~a~~~l~~A~~~Gi~~~DTA~~Yg~---~~-~~g~sE~~lG~al~~~~~~~~~R~~v~i~tK~~~-~~~~~~~~~i 144 (367)
.+.++..++.....+.|+..+|...--.. .+ .....++.+..+.+.. .+.++......-. ..+..-|..+
T Consensus 18 ~~~~~~~~ia~~L~~~Gv~~iE~G~~a~~~~~~~~~~~~~~e~i~~~~~~~-----~~~~l~~~~r~~~~~~~~~~p~~~ 92 (275)
T cd07937 18 MRTEDMLPIAEALDEAGFFSLEVWGGATFDVCMRFLNEDPWERLRELRKAM-----PNTPLQMLLRGQNLVGYRHYPDDV 92 (275)
T ss_pred ccHHHHHHHHHHHHHcCCCEEEccCCcchhhhccccCCCHHHHHHHHHHhC-----CCCceehhcccccccCccCCCcHH
Confidence 45688888888888999999998742100 00 0122345555444331 3334433333110 0011123343
Q ss_pred HHHHHHHHhhhCCCcEEEEEeccCCCCCCChhHHHHHHHHHHHHHcCcEeEEee-----cCCChHHHHHHHHHHHhcCCC
Q 017700 145 VNACRASLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKGLVRAVGV-----SNYGPNQLVKIHDYLTARGVP 219 (367)
Q Consensus 145 ~~~l~~sL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGv-----S~~~~~~l~~~~~~~~~~~~~ 219 (367)
.+..-+.....|++.+-++. +. .+ .+.+.+.++..|+.|+.-..++ +.++.+.+.++.+.+...|..
T Consensus 93 ~~~di~~~~~~g~~~iri~~-~~-----~~--~~~~~~~i~~ak~~G~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~Ga~ 164 (275)
T cd07937 93 VELFVEKAAKNGIDIFRIFD-AL-----ND--VRNLEVAIKAVKKAGKHVEGAICYTGSPVHTLEYYVKLAKELEDMGAD 164 (275)
T ss_pred HHHHHHHHHHcCCCEEEEee-cC-----Ch--HHHHHHHHHHHHHCCCeEEEEEEecCCCCCCHHHHHHHHHHHHHcCCC
Confidence 33333333455766666532 21 11 3447788899999997544444 445666666666666555433
Q ss_pred ceeEEeeecccccccch-hhHHHHHHHc-C--CeEEEecCCCCc
Q 017700 220 LCSAQVQFSLLSMGENQ-LEIKNICDSL-G--IRLISYSPLGLG 259 (367)
Q Consensus 220 ~~~~q~~~n~~~~~~~~-~~l~~~~~~~-g--i~v~a~~pl~~G 259 (367)
.+-+.=+.-...+.+ .+++...+++ + ++++.+.-++.+
T Consensus 165 --~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~l~~H~Hnd~GlA 206 (275)
T cd07937 165 --SICIKDMAGLLTPYAAYELVKALKKEVGLPIHLHTHDTSGLA 206 (275)
T ss_pred --EEEEcCCCCCCCHHHHHHHHHHHHHhCCCeEEEEecCCCChH
Confidence 222222221111221 2556665553 3 555566555543
No 125
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=39.51 E-value=2.4e+02 Score=30.54 Aligned_cols=148 Identities=17% Similarity=0.164 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHHCCCCEEeCCCCcCCCCCCChHHHHHHHHHhhCCCCCCCCCcEEEEeecc-CCCCCCChHHHHHHHHHH
Q 017700 73 SQLQQTFNLAVENGINLFDTADSYGTGRLNGKSEKLLGKFISEIPGQKQVQNNIVIATKFA-AYPWRLTPGQFVNACRAS 151 (367)
Q Consensus 73 ~~a~~~l~~A~~~Gi~~~DTA~~Yg~~~~~g~sE~~lG~al~~~~~~~~~R~~v~i~tK~~-~~~~~~~~~~i~~~l~~s 151 (367)
|-|.++++.|.|.|+..+- .|.. |..+. +.++ .-|+=|++.+.. +-...++.++|.+-.
T Consensus 17 EIAIRvFRAa~ELgi~TVA---Iys~-------ED~~S--~HR~-----KADEsY~iG~~~~Pi~aYL~IdeII~iA--- 76 (1149)
T COG1038 17 EIAIRVFRAANELGIKTVA---IYSE-------EDRLS--LHRF-----KADESYLIGEGKGPVEAYLSIDEIIRIA--- 76 (1149)
T ss_pred hhhHHHHHHHHhcCceEEE---Eeec-------cccch--hhhc-----cccceeeecCCCCchHHhccHHHHHHHH---
Confidence 7799999999999999775 7765 43322 1121 334455555543 222223444444433
Q ss_pred HhhhCCCcEEEEEeccCCCCCCChhHHHHHHHHHHHHHcCcEeEEeecCCChHHHH------HHHHHHHhcCCCceeEEe
Q 017700 152 LARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKGLVRAVGVSNYGPNQLV------KIHDYLTARGVPLCSAQV 225 (367)
Q Consensus 152 L~~Lg~d~iDl~~lH~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~l~------~~~~~~~~~~~~~~~~q~ 225 (367)
++-|.|- || |.-.+... -.+.-++..++| |.+||= .++.++ .+...+...++|+ +.-
T Consensus 77 -k~~gaDa-----Ih-PGYGfLSE----n~efA~~c~eaG-I~FIGP---~~e~ld~~GdKv~Ar~~A~~agvPv--ipg 139 (1149)
T COG1038 77 -KRSGADA-----IH-PGYGFLSE----NPEFARACAEAG-ITFIGP---KPEVLDMLGDKVKARNAAIKAGVPV--IPG 139 (1149)
T ss_pred -HHcCCCe-----ec-CCcccccC----CHHHHHHHHHcC-CEEeCC---CHHHHHHhccHHHHHHHHHHcCCCc--cCC
Confidence 2334443 67 53322221 235566677777 568886 344433 3344444445442 111
Q ss_pred eecccccccchhhHHHHHHHcCCeEEEecCCCCcc
Q 017700 226 QFSLLSMGENQLEIKNICDSLGIRLISYSPLGLGM 260 (367)
Q Consensus 226 ~~n~~~~~~~~~~l~~~~~~~gi~v~a~~pl~~G~ 260 (367)
.--+. .. -+++.+++++.|.+|+.-..+++|-
T Consensus 140 t~~~~--~~-~ee~~~fa~~~gyPvmiKA~~GGGG 171 (1149)
T COG1038 140 TDGPI--ET-IEEALEFAEEYGYPVMIKAAAGGGG 171 (1149)
T ss_pred CCCCc--cc-HHHHHHHHHhcCCcEEEEEccCCCc
Confidence 11111 11 2378999999999999999998873
No 126
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=39.45 E-value=2.6e+02 Score=26.13 Aligned_cols=111 Identities=9% Similarity=0.086 Sum_probs=64.8
Q ss_pred CCCChHHHHHHHHHHHhhhCCCcEEEEEeccCCCCCCChhHHHHHHHHHHHHH--cCcE-eEEeecCCChHHHHHHHHHH
Q 017700 137 WRLTPGQFVNACRASLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYE--KGLV-RAVGVSNYGPNQLVKIHDYL 213 (367)
Q Consensus 137 ~~~~~~~i~~~l~~sL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~~~~L~~l~~--~G~i-r~iGvS~~~~~~l~~~~~~~ 213 (367)
...+.+.+++-++..+. -|+ |-+++-....+...+..+|-.+.++..++ .|++ -..|++..+..+..++.+.+
T Consensus 16 g~iD~~~l~~lv~~~~~-~Gv---~gi~v~GstGE~~~Ls~~Er~~l~~~~~~~~~g~~pvi~gv~~~~t~~ai~~a~~A 91 (294)
T TIGR02313 16 GDIDEEALRELIEFQIE-GGS---HAISVGGTSGEPGSLTLEERKQAIENAIDQIAGRIPFAPGTGALNHDETLELTKFA 91 (294)
T ss_pred CCcCHHHHHHHHHHHHH-cCC---CEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCcEEEECCcchHHHHHHHHHHH
Confidence 35678888888888776 354 44555544333334444444555554444 5654 34688777776666666677
Q ss_pred HhcCCCceeEEeeecccccccchhhHHH----HHHHc-CCeEEEec
Q 017700 214 TARGVPLCSAQVQFSLLSMGENQLEIKN----ICDSL-GIRLISYS 254 (367)
Q Consensus 214 ~~~~~~~~~~q~~~n~~~~~~~~~~l~~----~~~~~-gi~v~a~~ 254 (367)
+..|.+-.++..+|..- +.++++++ .|..- +++|+.|.
T Consensus 92 ~~~Gad~v~v~pP~y~~---~~~~~l~~~f~~ia~a~~~lpv~iYn 134 (294)
T TIGR02313 92 EEAGADAAMVIVPYYNK---PNQEALYDHFAEVADAVPDFPIIIYN 134 (294)
T ss_pred HHcCCCEEEEcCccCCC---CCHHHHHHHHHHHHHhccCCCEEEEe
Confidence 77777655555554322 11224444 45555 78999884
No 127
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=39.14 E-value=2.8e+02 Score=26.23 Aligned_cols=108 Identities=11% Similarity=0.041 Sum_probs=62.3
Q ss_pred CCChHHHHHHHHHHHhhhCCCcEEEEEeccCCCCCCCh---hHHHHHHHHHHHHHcCcE-eEEeecCCChHHHHHHHHHH
Q 017700 138 RLTPGQFVNACRASLARLQIEQIGIGQLHWSTANYAPP---QELALWNGLVAMYEKGLV-RAVGVSNYGPNQLVKIHDYL 213 (367)
Q Consensus 138 ~~~~~~i~~~l~~sL~~Lg~d~iDl~~lH~~~~~~~~~---~~~~~~~~L~~l~~~G~i-r~iGvS~~~~~~l~~~~~~~ 213 (367)
..+.+.+++.++..+. -|+ |=+++-........+ +..+++++..+.. .|++ --+|++..+..+..++.+.+
T Consensus 25 ~iD~~~l~~lv~~li~-~Gv---~Gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~-~grvpvi~Gv~~~~t~~ai~~a~~A 99 (309)
T cd00952 25 TVDLDETARLVERLIA-AGV---DGILTMGTFGECATLTWEEKQAFVATVVETV-AGRVPVFVGATTLNTRDTIARTRAL 99 (309)
T ss_pred CcCHHHHHHHHHHHHH-cCC---CEEEECcccccchhCCHHHHHHHHHHHHHHh-CCCCCEEEEeccCCHHHHHHHHHHH
Confidence 4577777777777666 454 445554332222223 2333444444443 4544 56899888888877777888
Q ss_pred HhcCCCceeEEee-ecccccccchhhHHHH----HHHc-CCeEEEec
Q 017700 214 TARGVPLCSAQVQ-FSLLSMGENQLEIKNI----CDSL-GIRLISYS 254 (367)
Q Consensus 214 ~~~~~~~~~~q~~-~n~~~~~~~~~~l~~~----~~~~-gi~v~a~~ 254 (367)
...|.+-.++..+ |.... +++++++ |..- +++|+.|.
T Consensus 100 ~~~Gad~vlv~~P~y~~~~----~~~l~~yf~~va~a~~~lPv~iYn 142 (309)
T cd00952 100 LDLGADGTMLGRPMWLPLD----VDTAVQFYRDVAEAVPEMAIAIYA 142 (309)
T ss_pred HHhCCCEEEECCCcCCCCC----HHHHHHHHHHHHHhCCCCcEEEEc
Confidence 8888764444444 43332 2245443 4455 59999994
No 128
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=39.06 E-value=3.3e+02 Score=26.17 Aligned_cols=24 Identities=29% Similarity=0.400 Sum_probs=15.6
Q ss_pred CCCHHHHHHHH-------HHHHHCCCCEEeC
Q 017700 69 ESMDSQLQQTF-------NLAVENGINLFDT 92 (367)
Q Consensus 69 ~~~~~~a~~~l-------~~A~~~Gi~~~DT 92 (367)
.++.++..+++ +.|.+.|+..++-
T Consensus 126 ~mt~~eI~~i~~~f~~aA~~a~~aGfDgVei 156 (353)
T cd02930 126 ELSEEEIEQTIEDFARCAALAREAGYDGVEI 156 (353)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 35555544444 4557789999986
No 129
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=38.97 E-value=3.1e+02 Score=25.08 Aligned_cols=106 Identities=12% Similarity=0.027 Sum_probs=64.3
Q ss_pred ChHHHHHHHHHHHhhhCCCcEEEEEec-cCCCCCCCh--hHHHHHHHHHHHHHcCcEeEEeecCCChHHHHHHHHHHHhc
Q 017700 140 TPGQFVNACRASLARLQIEQIGIGQLH-WSTANYAPP--QELALWNGLVAMYEKGLVRAVGVSNYGPNQLVKIHDYLTAR 216 (367)
Q Consensus 140 ~~~~i~~~l~~sL~~Lg~d~iDl~~lH-~~~~~~~~~--~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~ 216 (367)
+.+.+.+..++.+ .-|-|.||+-.-- +|+....+. +.+.+...++.+++.-.+ -|.|.++.++.++++++.
T Consensus 22 ~~~~~~~~a~~~~-~~GAdiIDvG~~st~p~~~~~~~~~E~~rl~~~v~~l~~~~~~-piSIDT~~~~v~~aaL~~---- 95 (258)
T cd00423 22 SLDKALEHARRMV-EEGADIIDIGGESTRPGAEPVSVEEELERVIPVLRALAGEPDV-PISVDTFNAEVAEAALKA---- 95 (258)
T ss_pred CHHHHHHHHHHHH-HCCCCEEEECCCcCCCCCCcCCHHHHHHHHHHHHHHHHhcCCC-eEEEeCCcHHHHHHHHHh----
Confidence 5666666665554 6789999986322 232111111 223466677777766233 378999999999988876
Q ss_pred CCCceeEEeeecccccccchhhHHHHHHHcCCeEEEecCCC
Q 017700 217 GVPLCSAQVQFSLLSMGENQLEIKNICDSLGIRLISYSPLG 257 (367)
Q Consensus 217 ~~~~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~v~a~~pl~ 257 (367)
....+|- .+... .+.++++.++++|..++.+..-+
T Consensus 96 -g~~iINd--is~~~---~~~~~~~l~~~~~~~vV~m~~~~ 130 (258)
T cd00423 96 -GADIIND--VSGGR---GDPEMAPLAAEYGAPVVLMHMDG 130 (258)
T ss_pred -CCCEEEe--CCCCC---CChHHHHHHHHcCCCEEEECcCC
Confidence 2222222 22221 11378999999999998875443
No 130
>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A, archaeal. This model describes an archaeal family related, and predicted to be functionally equivalent, to molybdenum cofactor biosynthesis protein A (MoaA) of bacteria (see TIGR02666).
Probab=38.60 E-value=3.3e+02 Score=25.31 Aligned_cols=132 Identities=13% Similarity=0.207 Sum_probs=73.5
Q ss_pred CCCCHHHHHHHHHHHHHCCCCEEeCCCCcCCCC-CCChHHHHHHHHHhhCCCCCCCCCcEEEEeeccCCCCCCChHHHHH
Q 017700 68 QESMDSQLQQTFNLAVENGINLFDTADSYGTGR-LNGKSEKLLGKFISEIPGQKQVQNNIVIATKFAAYPWRLTPGQFVN 146 (367)
Q Consensus 68 ~~~~~~~a~~~l~~A~~~Gi~~~DTA~~Yg~~~-~~g~sE~~lG~al~~~~~~~~~R~~v~i~tK~~~~~~~~~~~~i~~ 146 (367)
..++.++..++++.+.+.|+..+.- .|.-| ....-.+++.. ++.. .-.++.|+|... .+ .
T Consensus 38 ~~ls~eei~~~i~~~~~~gi~~I~~---tGGEPll~~~l~~iv~~-l~~~-----g~~~v~i~TNG~---------ll-~ 98 (302)
T TIGR02668 38 NELSPEEIERIVRVASEFGVRKVKI---TGGEPLLRKDLIEIIRR-IKDY-----GIKDVSMTTNGI---------LL-E 98 (302)
T ss_pred CcCCHHHHHHHHHHHHHcCCCEEEE---ECcccccccCHHHHHHH-HHhC-----CCceEEEEcCch---------HH-H
Confidence 3467889999999999999988763 23211 12222333333 2221 113567777531 11 2
Q ss_pred HHHHHHhhhCCCcEEEEEeccCCCC-CC----ChhHHHHHHHHHHHHHcCc----EeEEeecCCChHHHHHHHHHHHhcC
Q 017700 147 ACRASLARLQIEQIGIGQLHWSTAN-YA----PPQELALWNGLVAMYEKGL----VRAVGVSNYGPNQLVKIHDYLTARG 217 (367)
Q Consensus 147 ~l~~sL~~Lg~d~iDl~~lH~~~~~-~~----~~~~~~~~~~L~~l~~~G~----ir~iGvS~~~~~~l~~~~~~~~~~~ 217 (367)
..-..|...|.+.+- +-|+..++. +. ....+.+++.++.+++.|. |..+.+.+.+..++..+++.+...+
T Consensus 99 ~~~~~l~~~g~~~v~-iSld~~~~~~~~~i~~~~~~~~vl~~i~~~~~~G~~~v~i~~v~~~g~n~~ei~~~~~~~~~~g 177 (302)
T TIGR02668 99 KLAKKLKEAGLDRVN-VSLDTLDPEKYKKITGRGALDRVIEGIESAVDAGLTPVKLNMVVLKGINDNEIPDMVEFAAEGG 177 (302)
T ss_pred HHHHHHHHCCCCEEE-EEecCCCHHHhhhccCCCcHHHHHHHHHHHHHcCCCcEEEEEEEeCCCCHHHHHHHHHHHHhcC
Confidence 233446667777665 344543221 00 1124557888888888874 3344445466677777777776655
Q ss_pred CC
Q 017700 218 VP 219 (367)
Q Consensus 218 ~~ 219 (367)
+.
T Consensus 178 ~~ 179 (302)
T TIGR02668 178 AI 179 (302)
T ss_pred CE
Confidence 43
No 131
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=38.49 E-value=2.5e+02 Score=25.93 Aligned_cols=112 Identities=7% Similarity=0.007 Sum_probs=64.0
Q ss_pred CCCChHHHHHHHHHHHhhhCCCcEEEEEeccCCCCCCChhHH---HHHHHHHHHHHcCcEeEEeecCCChHHHHHHHHHH
Q 017700 137 WRLTPGQFVNACRASLARLQIEQIGIGQLHWSTANYAPPQEL---ALWNGLVAMYEKGLVRAVGVSNYGPNQLVKIHDYL 213 (367)
Q Consensus 137 ~~~~~~~i~~~l~~sL~~Lg~d~iDl~~lH~~~~~~~~~~~~---~~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~~ 213 (367)
..++.+.+++.++..++ -|+ |-+++-........+..+ ++.+...+..+....-..|++..+..+..+..+.+
T Consensus 16 g~iD~~~~~~~i~~l~~-~Gv---~gl~v~GstGE~~~lt~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~~~~a~~a 91 (284)
T cd00950 16 GSVDFDALERLIEFQIE-NGT---DGLVVCGTTGESPTLSDEEHEAVIEAVVEAVNGRVPVIAGTGSNNTAEAIELTKRA 91 (284)
T ss_pred CCcCHHHHHHHHHHHHH-cCC---CEEEECCCCcchhhCCHHHHHHHHHHHHHHhCCCCcEEeccCCccHHHHHHHHHHH
Confidence 35678888888887665 554 444444322222223233 34444444333233456899888888877777888
Q ss_pred HhcCCCceeEEeeecccccccchhhHHHHH----HHcCCeEEEecC
Q 017700 214 TARGVPLCSAQVQFSLLSMGENQLEIKNIC----DSLGIRLISYSP 255 (367)
Q Consensus 214 ~~~~~~~~~~q~~~n~~~~~~~~~~l~~~~----~~~gi~v~a~~p 255 (367)
+..|.+-.++..++... ..+.+++++. ..-+++++.|..
T Consensus 92 ~~~G~d~v~~~~P~~~~---~~~~~l~~~~~~ia~~~~~pi~lYn~ 134 (284)
T cd00950 92 EKAGADAALVVTPYYNK---PSQEGLYAHFKAIAEATDLPVILYNV 134 (284)
T ss_pred HHcCCCEEEEcccccCC---CCHHHHHHHHHHHHhcCCCCEEEEEC
Confidence 88887755555554322 1122555544 445899998843
No 132
>PRK05283 deoxyribose-phosphate aldolase; Provisional
Probab=38.27 E-value=2.6e+02 Score=25.78 Aligned_cols=83 Identities=12% Similarity=0.102 Sum_probs=53.2
Q ss_pred CHH-HHHHHHHHHHHCCCCEEeCCCCcCCCCCCChHHHHHHHHHhhCCCCCCCCCcEEEEeeccCCCCCCChHHHHHHHH
Q 017700 71 MDS-QLQQTFNLAVENGINLFDTADSYGTGRLNGKSEKLLGKFISEIPGQKQVQNNIVIATKFAAYPWRLTPGQFVNACR 149 (367)
Q Consensus 71 ~~~-~a~~~l~~A~~~Gi~~~DTA~~Yg~~~~~g~sE~~lG~al~~~~~~~~~R~~v~i~tK~~~~~~~~~~~~i~~~l~ 149 (367)
+++ +..+..+.|.++|..|+=|+.-|+.....-+.-+++-+.++++. ...+ +--|...-- -+.++...-++
T Consensus 144 ~~ee~i~~a~~~a~~aGADFVKTSTGf~~~gAt~edv~lm~~~i~~~~----~~~~--vgIKAsGGI--rt~~~A~~~i~ 215 (257)
T PRK05283 144 KDEALIRKASEIAIKAGADFIKTSTGKVPVNATLEAARIMLEVIRDMG----VAKT--VGFKPAGGV--RTAEDAAQYLA 215 (257)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHHHHhcc----cCCC--eeEEccCCC--CCHHHHHHHHH
Confidence 445 47889999999999999999999751111122244445554321 1122 344442211 17888888899
Q ss_pred HHHhhhCCCcEE
Q 017700 150 ASLARLQIEQIG 161 (367)
Q Consensus 150 ~sL~~Lg~d~iD 161 (367)
---+.||.+|++
T Consensus 216 ag~~~lg~~~~~ 227 (257)
T PRK05283 216 LADEILGADWAD 227 (257)
T ss_pred HHHHHhChhhcC
Confidence 999999998866
No 133
>PF01964 ThiC: ThiC family; InterPro: IPR002817 ThiC is found within the thiamin biosynthesis operon. ThiC is involved in thiamin biosynthesis []. The precise catalytic function of ThiC is still not known. ThiC participates in the formation of 4-Amino-5-hydroxymethyl-2-methylpyrimidine from AIR, an intermediate in the de novo pyrimidine biosynthesis.; GO: 0009228 thiamine biosynthetic process; PDB: 3EPO_A 3EPN_B 3EPM_B.
Probab=38.14 E-value=2.1e+02 Score=28.21 Aligned_cols=149 Identities=13% Similarity=0.144 Sum_probs=72.5
Q ss_pred CHHHHHHHHHHHHHCCCCEE-eCCCCcCCCCCCChHHHHHHHHHhhCCCCCCCCCcEEEEee--------ccCCCCCCCh
Q 017700 71 MDSQLQQTFNLAVENGINLF-DTADSYGTGRLNGKSEKLLGKFISEIPGQKQVQNNIVIATK--------FAAYPWRLTP 141 (367)
Q Consensus 71 ~~~~a~~~l~~A~~~Gi~~~-DTA~~Yg~~~~~g~sE~~lG~al~~~~~~~~~R~~v~i~tK--------~~~~~~~~~~ 141 (367)
+.+.=.+-++.|.+.|-..+ |-+. - |.-.++--..|+. .++-|.|- .+....+++.
T Consensus 74 d~~~E~~K~~~A~~~GADtvMDLSt-g------gdl~~iR~~il~~--------~~vpvGTVPiYqa~~~~~~~~~~~t~ 138 (420)
T PF01964_consen 74 DIEEELEKLKIAEKAGADTVMDLST-G------GDLDEIRRAILEN--------SPVPVGTVPIYQAAIRKGGSIVDMTE 138 (420)
T ss_dssp -HHHHHHHHHHHHHTT-SEEEE----S------TTHHHHHHHHHHT---------SS-EEE-HHHHHHHHTTT-GGG--H
T ss_pred CHHHHHHHHHHHHHhCCCEEEEcCC-C------CCHHHHHHHHHHh--------CCCccccchHHHHHHHhCCChhhCCH
Confidence 34555677899999998755 5443 2 3344444444443 23444442 1122235688
Q ss_pred HHHHHHHHHHHhhhCCCcEEEEEeccCCCCCCChhHHHHHHHHHHHHHcCcEeEEeecCCChHHHHHHHHHHHhcCCCce
Q 017700 142 GQFVNACRASLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKGLVRAVGVSNYGPNQLVKIHDYLTARGVPLC 221 (367)
Q Consensus 142 ~~i~~~l~~sL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~ 221 (367)
+.+.+.+++..+. =+|++-+|.- . ..+.++.++++|++-.| ||- +..-+...+.. ++
T Consensus 139 d~~~~~ie~qa~~----GVDfmtiH~g----i------t~~~~~~~~~~~R~~gi-VSR-GGs~l~~WM~~---n~---- 195 (420)
T PF01964_consen 139 DDFFDVIEKQAKD----GVDFMTIHCG----I------TRETLERLKKSGRIMGI-VSR-GGSILAAWMLH---NG---- 195 (420)
T ss_dssp HHHHHHHHHHHHH----T--EEEE-TT------------GGGGGGGT--TSSS-----H-HHHHHHHHHHH---HT----
T ss_pred HHHHHHHHHHHHc----CCCEEEEccc----h------hHHHHHHHhhhccccCc-ccc-chHHHHHHHHh---cC----
Confidence 8899888888764 5788889953 1 35788889999986655 444 33333333322 11
Q ss_pred eEEeeecccccccchhhHHHHHHHcCCeEEEecCCCCccccC
Q 017700 222 SAQVQFSLLSMGENQLEIKNICDSLGIRLISYSPLGLGMLTG 263 (367)
Q Consensus 222 ~~q~~~n~~~~~~~~~~l~~~~~~~gi~v~a~~pl~~G~L~~ 263 (367)
.=||+.... + ++++.|+++++.+.-...|-.|-+.+
T Consensus 196 ----~ENPly~~f-D-~lLeI~k~yDVtLSLGDglRPG~i~D 231 (420)
T PF01964_consen 196 ----KENPLYEHF-D-RLLEIAKEYDVTLSLGDGLRPGCIAD 231 (420)
T ss_dssp ----S--HHHHTH-H-HHHHHHTTTT-EEEE--TT--SSGGG
T ss_pred ----CcCcHHHhH-H-HHHHHHHHhCeeEecccccCCCCcCC
Confidence 112332222 2 89999999999987666666655543
No 134
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=37.66 E-value=2.8e+02 Score=25.71 Aligned_cols=111 Identities=13% Similarity=0.094 Sum_probs=62.9
Q ss_pred CCCChHHHHHHHHHHHhhhCCCcEEEEEeccCCCCCCChhHHHHHHHHHHHHH--cCcE-eEEeecCCChHHHHHHHHHH
Q 017700 137 WRLTPGQFVNACRASLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYE--KGLV-RAVGVSNYGPNQLVKIHDYL 213 (367)
Q Consensus 137 ~~~~~~~i~~~l~~sL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~~~~L~~l~~--~G~i-r~iGvS~~~~~~l~~~~~~~ 213 (367)
..++.+.+++-++..++. | +|-+++-....+...+..+|-.+.++..++ .|++ -..|++..+..+..++.+.+
T Consensus 17 g~id~~~~~~~i~~l~~~-G---v~gl~~~GstGE~~~Lt~~Er~~l~~~~~~~~~~~~~vi~gv~~~st~~~i~~a~~a 92 (289)
T PF00701_consen 17 GSIDEDALKRLIDFLIEA-G---VDGLVVLGSTGEFYSLTDEERKELLEIVVEAAAGRVPVIAGVGANSTEEAIELARHA 92 (289)
T ss_dssp SSB-HHHHHHHHHHHHHT-T---SSEEEESSTTTTGGGS-HHHHHHHHHHHHHHHTTSSEEEEEEESSSHHHHHHHHHHH
T ss_pred cCcCHHHHHHHHHHHHHc-C---CCEEEECCCCcccccCCHHHHHHHHHHHHHHccCceEEEecCcchhHHHHHHHHHHH
Confidence 455777777777777754 5 445555433223233333333333333333 3443 67899998888887888888
Q ss_pred HhcCCCceeEEeeecccccccchhhHHHH----HHHcCCeEEEec
Q 017700 214 TARGVPLCSAQVQFSLLSMGENQLEIKNI----CDSLGIRLISYS 254 (367)
Q Consensus 214 ~~~~~~~~~~q~~~n~~~~~~~~~~l~~~----~~~~gi~v~a~~ 254 (367)
+..|.+-.++..+|... ..+++++++ |..-+++++.|.
T Consensus 93 ~~~Gad~v~v~~P~~~~---~s~~~l~~y~~~ia~~~~~pi~iYn 134 (289)
T PF00701_consen 93 QDAGADAVLVIPPYYFK---PSQEELIDYFRAIADATDLPIIIYN 134 (289)
T ss_dssp HHTT-SEEEEEESTSSS---CCHHHHHHHHHHHHHHSSSEEEEEE
T ss_pred hhcCceEEEEecccccc---chhhHHHHHHHHHHhhcCCCEEEEE
Confidence 88887755555554332 122245444 445589999885
No 135
>COG4408 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.83 E-value=2.7e+02 Score=26.91 Aligned_cols=117 Identities=15% Similarity=0.193 Sum_probs=72.1
Q ss_pred HHHHHHHHHHcCcEeEEeecCCChHHHHHHHHHHHhcCCCceeEEeeecccccccchhhHHHHHHHcCCeEEEecCCCCc
Q 017700 180 LWNGLVAMYEKGLVRAVGVSNYGPNQLVKIHDYLTARGVPLCSAQVQFSLLSMGENQLEIKNICDSLGIRLISYSPLGLG 259 (367)
Q Consensus 180 ~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~v~a~~pl~~G 259 (367)
-..+|-+.+++.. |+|=+.-+....+.+.+.+++.++.+.++..+ ..|+.++|...++.||..+
T Consensus 160 p~~alTkavKkri--Ylgs~~~ns~~~e~l~~v~aq~~I~v~~~esp--------------~~AEtrnit~YVHpPlfln 223 (431)
T COG4408 160 PNRALTKAVKKRI--YLGSQHGNSGSAEMLTAVLAQHGIDVEPCESP--------------LAAETRNITLYVHPPLFLN 223 (431)
T ss_pred cchHHHHHHhHhe--eeccCCCCChHHHHHHHHHHhcCCceEEcCCh--------------hhhhhcccceeecCcchhh
Confidence 3567777777766 88865555555666777777776655444221 2577889999999999776
Q ss_pred cccC----------CCCCCCCCCChhhhhhhhhccChHHHHHHHHHHHHHhCCCHHHHHHHHHHcCC
Q 017700 260 MLTG----------KYTPSKLPRGPRALLFRQILPGLKPLLRSLKEIAERRGKTIPQVAINWCICKG 316 (367)
Q Consensus 260 ~L~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~g~t~~qlal~~~l~~~ 316 (367)
-++= .|..+-.|+++-... .......+++++.++.++.|+...- .|+|.-...
T Consensus 224 dfsL~aif~~~~~p~yvYKlyPEGPIt~~---lIr~mr~lwke~m~ll~r~~ve~iN-LLrFl~ddN 286 (431)
T COG4408 224 DFSLQAIFYPEQRPQYVYKLYPEGPITPA---LIRDMRGLWKEYMRLLNRLGVEEIN-LLRFLNDDN 286 (431)
T ss_pred hhHHHHHhCCcCCCceeEecCCCCCCCHH---HHHHHHHHHHHHHHHHHHcCCCchh-HHHHhccCC
Confidence 4431 111122344432211 2233445667888888888887766 577776543
No 136
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=36.73 E-value=3.2e+02 Score=25.51 Aligned_cols=109 Identities=14% Similarity=0.050 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhCCCc-EEEEEeccCCCCCCChhHHHHHHHHHHHHHcCcEe---EEeecCCChHHHHHHHHHHHhcCCC-
Q 017700 145 VNACRASLARLQIEQ-IGIGQLHWSTANYAPPQELALWNGLVAMYEKGLVR---AVGVSNYGPNQLVKIHDYLTARGVP- 219 (367)
Q Consensus 145 ~~~l~~sL~~Lg~d~-iDl~~lH~~~~~~~~~~~~~~~~~L~~l~~~G~ir---~iGvS~~~~~~l~~~~~~~~~~~~~- 219 (367)
..++++.++.+--.- +|-+++-.-..+...+..+|-.+.++..++.-.=| .+|++..+..+..++.+.++..|.+
T Consensus 20 ~~~~~~~i~~~i~~G~v~gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~~~t~~~i~la~~a~~~Gad~ 99 (290)
T TIGR00683 20 EKGLRQIIRHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEAKDQIALIAQVGSVNLKEAVELGKYATELGYDC 99 (290)
T ss_pred HHHHHHHHHHHHhCCCcCEEEECCcccccccCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHHhCCCE
Q ss_pred ceeEEeeecccccccchhhHHHHHHHc-CCeEEEe
Q 017700 220 LCSAQVQFSLLSMGENQLEIKNICDSL-GIRLISY 253 (367)
Q Consensus 220 ~~~~q~~~n~~~~~~~~~~l~~~~~~~-gi~v~a~ 253 (367)
+.+....|...+...--.-+.+.|... +++++.|
T Consensus 100 v~v~~P~y~~~~~~~i~~yf~~v~~~~~~lpv~lY 134 (290)
T TIGR00683 100 LSAVTPFYYKFSFPEIKHYYDTIIAETGGLNMIVY 134 (290)
T ss_pred EEEeCCcCCCCCHHHHHHHHHHHHhhCCCCCEEEE
No 137
>TIGR01862 N2-ase-Ialpha nitrogenase component I, alpha chain. This model represents the alpha chain of all three varieties (Mo-Fe, V-Fe, and Fe-Fe) of component I of nitrogenase.
Probab=36.56 E-value=3e+02 Score=27.45 Aligned_cols=114 Identities=13% Similarity=0.059 Sum_probs=60.9
Q ss_pred CCCcCCCCCCChHHHHHHHHHhhCCCCCCCC-CcEEEEeeccCCCCCCChHHHHHHHHHHHhhhCCCcEEEEEeccCCCC
Q 017700 93 ADSYGTGRLNGKSEKLLGKFISEIPGQKQVQ-NNIVIATKFAAYPWRLTPGQFVNACRASLARLQIEQIGIGQLHWSTAN 171 (367)
Q Consensus 93 A~~Yg~~~~~g~sE~~lG~al~~~~~~~~~R-~~v~i~tK~~~~~~~~~~~~i~~~l~~sL~~Lg~d~iDl~~lH~~~~~ 171 (367)
.-.||. |+-|-++|+..-+ ..+. +=|+|.|-+... +--+++..-+++.-++++ +.++.+|.++..
T Consensus 96 d~V~Gg-------~~~L~~aI~~~~~-~~~p~~~I~V~~tC~~~---liGdDi~~v~~~~~~~~~---~pvi~v~t~gf~ 161 (443)
T TIGR01862 96 DIVFGG-------EKKLKKLIHEAFT-EFPLIKAISVYATCPTG---LIGDDIEAVAKEVSKEIG---KDVVAVNCPGFA 161 (443)
T ss_pred ceeeCc-------HHHHHHHHHHHHH-hCCccceEEEECCChHH---HhccCHHHHHHHHHHhcC---CCEEEEecCCcc
Confidence 346775 6677777765422 0123 446677665321 123344444444334444 688999987533
Q ss_pred CCC--hhHHHHHHH-HHHHH--------HcCcEeEEeecCCChHHHHHHHHHHHhcCCCce
Q 017700 172 YAP--PQELALWNG-LVAMY--------EKGLVRAVGVSNYGPNQLVKIHDYLTARGVPLC 221 (367)
Q Consensus 172 ~~~--~~~~~~~~~-L~~l~--------~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~ 221 (367)
... .....+.++ ++.+. ++++|.-||-.++ ...++++.+..+..|+++.
T Consensus 162 g~~~~~G~~~a~~al~~~l~~~~~~~~~~~~~VNiig~~~~-~~d~~el~~lL~~~Gl~v~ 221 (443)
T TIGR01862 162 GVSQSKGHHIANIAVINDKVGTREKEITTEYDVNIIGEYNI-GGDAWVMRIYLEEMGIQVV 221 (443)
T ss_pred CCccchHHHHHHHHHHHHHhCCCCcccCCCCeEEEEccCcC-cccHHHHHHHHHHcCCeEE
Confidence 211 112222332 33443 2577999986554 4456777777777776553
No 138
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=36.43 E-value=51 Score=25.47 Aligned_cols=47 Identities=17% Similarity=0.219 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHcCcEeEEeecCCChHHHHHHHHHHHhcCCCceeEEe
Q 017700 178 LALWNGLVAMYEKGLVRAVGVSNYGPNQLVKIHDYLTARGVPLCSAQV 225 (367)
Q Consensus 178 ~~~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~ 225 (367)
.++.++++.|++.|+--.+ +||-+...-....+..+..|+++...|+
T Consensus 17 pga~e~l~~L~~~g~~~~~-lTNns~~s~~~~~~~L~~~Gi~~~~~~i 63 (101)
T PF13344_consen 17 PGAVEALDALRERGKPVVF-LTNNSSRSREEYAKKLKKLGIPVDEDEI 63 (101)
T ss_dssp TTHHHHHHHHHHTTSEEEE-EES-SSS-HHHHHHHHHHTTTT--GGGE
T ss_pred cCHHHHHHHHHHcCCCEEE-EeCCCCCCHHHHHHHHHhcCcCCCcCEE
Confidence 4578999999999975555 8887766656666666777777654444
No 139
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=36.09 E-value=2.8e+02 Score=27.79 Aligned_cols=64 Identities=14% Similarity=0.295 Sum_probs=37.9
Q ss_pred ChHHHHHHHHHHHhhhCCCcEEEEEe-ccCC--------CCC-CC--hhHHHHHH-HHHHHHHcCcEeEEeecCCChHH
Q 017700 140 TPGQFVNACRASLARLQIEQIGIGQL-HWST--------ANY-AP--PQELALWN-GLVAMYEKGLVRAVGVSNYGPNQ 205 (367)
Q Consensus 140 ~~~~i~~~l~~sL~~Lg~d~iDl~~l-H~~~--------~~~-~~--~~~~~~~~-~L~~l~~~G~ir~iGvS~~~~~~ 205 (367)
+.+.+++.++..++ |+.++|.++.+ +.|. ... .+ ....+.++ +.+.|.+.|. ..+++++|....
T Consensus 216 t~e~~~~tl~~~~~-l~~~~is~y~L~~~p~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~L~~~Gy-~~~~~~~fa~~~ 292 (455)
T TIGR00538 216 TKESFAKTLEKVAE-LNPDRLAVFNYAHVPWVKPAQRKIPEAALPSAEEKLDILQETIAFLTEAGY-QFIGMDHFAKPD 292 (455)
T ss_pred CHHHHHHHHHHHHh-cCCCEEEEecCccccchhHHHhcccccCCCCHHHHHHHHHHHHHHHHHCCC-EEEeccceeCCC
Confidence 78888888886655 89999998877 2121 000 11 11112233 4456666775 568898887543
No 140
>cd03318 MLE Muconate Lactonizing Enzyme (MLE), an homooctameric enzyme, catalyses the conversion of cis,cis-muconate (CCM) to muconolactone (ML) in the catechol branch of the beta-ketoadipate pathway. This pathway is used in soil microbes to breakdown lignin-derived aromatics, catechol and protocatechuate, to citric acid cycle intermediates. Some bacterial species are also capable of dehalogenating chloroaromatic compounds by the action of chloromuconate lactonizing enzymes (Cl-MLEs). MLEs are members of the enolase superfamily characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=35.91 E-value=1.9e+02 Score=27.80 Aligned_cols=73 Identities=15% Similarity=0.136 Sum_probs=43.0
Q ss_pred HHHHHHHHHcCcEe-EEeecCCChHHHHHHHHHHHhcCCCceeEEeeecccccccchhhHHHHHHHcCCeEEEecCCCC
Q 017700 181 WNGLVAMYEKGLVR-AVGVSNYGPNQLVKIHDYLTARGVPLCSAQVQFSLLSMGENQLEIKNICDSLGIRLISYSPLGL 258 (367)
Q Consensus 181 ~~~L~~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~v~a~~pl~~ 258 (367)
++.+.+|+++..|. ++|=+.++..++..+++. -.++++|+....+---..-.++...|+++|+.++..+-...
T Consensus 228 ~~~~~~l~~~~~~pia~dE~~~~~~~~~~~i~~-----~~~d~~~~d~~~~GGit~~~~~~~~a~~~gi~~~~~~~~~s 301 (365)
T cd03318 228 LDGLARLRSRNRVPIMADESVSGPADAFELARR-----GAADVFSLKIAKSGGLRRAQKVAAIAEAAGIALYGGTMLES 301 (365)
T ss_pred HHHHHHHHhhcCCCEEcCcccCCHHHHHHHHHh-----CCCCeEEEeecccCCHHHHHHHHHHHHHcCCceeecCcchh
Confidence 56666777665543 445555566666666553 23566666655432111223778889999999876544433
No 141
>TIGR00238 KamA family protein. Note that the E. coli homolog was expressed in E. coli and purified and found not to display display lysine 2,3-aminomutase activity. Active site residues are found in 100 residue extension in B. subtilis. Name changed to KamA family protein.
Probab=35.73 E-value=4e+02 Score=25.46 Aligned_cols=80 Identities=15% Similarity=0.098 Sum_probs=43.7
Q ss_pred HHHHHHHHHHcCcEeEEeecCCC----hHH-HHHHHHHHHhcCCCceeEEeeeccc-ccccchhhHHHHHHHcCCeEEEe
Q 017700 180 LWNGLVAMYEKGLVRAVGVSNYG----PNQ-LVKIHDYLTARGVPLCSAQVQFSLL-SMGENQLEIKNICDSLGIRLISY 253 (367)
Q Consensus 180 ~~~~L~~l~~~G~ir~iGvS~~~----~~~-l~~~~~~~~~~~~~~~~~q~~~n~~-~~~~~~~~l~~~~~~~gi~v~a~ 253 (367)
+.+.++.+++-+.++.|.++.-. +.. -+++.+..+..+.+.. ....+|-- +-...-.+.++.+++.|+.+..-
T Consensus 178 L~~ll~~L~~i~~~~~IRi~tr~~~~~P~rit~el~~~L~~~~~~~~-~vsh~nh~~Ei~~~~~~ai~~L~~aGi~v~~q 256 (331)
T TIGR00238 178 LEWLLKRLEEIPHLVRLRIGTRLPVVIPQRITDELCELLASFELQLM-LVTHINHCNEITEEFAEAMKKLRTVNVTLLNQ 256 (331)
T ss_pred HHHHHHHHHhcCCccEEEeecCCCccCchhcCHHHHHHHHhcCCcEE-EEccCCChHhCCHHHHHHHHHHHHcCCEEEee
Confidence 56677777776666555553321 111 2344444444444322 22223322 11111235567788999999999
Q ss_pred cCCCCcc
Q 017700 254 SPLGLGM 260 (367)
Q Consensus 254 ~pl~~G~ 260 (367)
+++..|.
T Consensus 257 tvLl~gv 263 (331)
T TIGR00238 257 SVLLRGV 263 (331)
T ss_pred cceECCc
Confidence 9998874
No 142
>TIGR01378 thi_PPkinase thiamine pyrophosphokinase. This model has been revised. Originally, it described strictly eukaryotic thiamine pyrophosphokinase. However, it is now expanded to include also homologous enzymes, apparently functionally equivalent, from species that rely on thiamine pyrophosphokinase rather than thiamine-monophosphate kinase (TIGR01379) to produce the active TPP cofactor. This includes the thiamine pyrophosphokinase from Bacillus subtilis, previously designated YloS.
Probab=35.32 E-value=3.1e+02 Score=24.09 Aligned_cols=73 Identities=21% Similarity=0.335 Sum_probs=48.8
Q ss_pred cCCCceeEEeeecccccccchhhHHHHHHHcCCeEEEecCCCCccccCCCCCCCCCCChhhhhhhhhccChHHHHHHHHH
Q 017700 216 RGVPLCSAQVQFSLLSMGENQLEIKNICDSLGIRLISYSPLGLGMLTGKYTPSKLPRGPRALLFRQILPGLKPLLRSLKE 295 (367)
Q Consensus 216 ~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~v~a~~pl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 295 (367)
.++.|+++-..|-=+ ..+.+++.+++++.++.+.|-.
T Consensus 34 ~gi~Pd~iiGDfDSi-----~~~~~~~~~~~~~~~~~~~~eK-------------------------------------- 70 (203)
T TIGR01378 34 LGLTPDLIVGDFDSI-----DEEELDFYKKAGVKIIVFPPEK-------------------------------------- 70 (203)
T ss_pred CCCCCCEEEeCcccC-----CHHHHHHHHHcCCceEEcCCCC--------------------------------------
Confidence 456777766655322 1266777788888777753332
Q ss_pred HHHHhCCCHHHHHHHHHHcCCC--eeecCCC--CHHHHHHHHhcc
Q 017700 296 IAERRGKTIPQVAINWCICKGT--IPIPGVK--SVKQVEENLGAL 336 (367)
Q Consensus 296 la~~~g~t~~qlal~~~l~~~~--~vi~g~~--~~e~l~enl~a~ 336 (367)
..|=.++|++|+++++. ++|.|+. +.+|.-.|+..+
T Consensus 71 -----D~TD~e~Al~~~~~~~~~~i~i~Ga~GgR~DH~lani~~L 110 (203)
T TIGR01378 71 -----DTTDLELALKYALERGADEITILGATGGRLDHTLANLNLL 110 (203)
T ss_pred -----CCCHHHHHHHHHHHCCCCEEEEEcCCCCcHHHHHHHHHHH
Confidence 24556899999998876 7777765 677777777654
No 143
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=35.29 E-value=4.7e+02 Score=26.15 Aligned_cols=108 Identities=16% Similarity=0.171 Sum_probs=55.3
Q ss_pred ChHHHHHHHHHHHhhhCCCcEEEEEeccCCCCCCChhHHHHHHHHHHHHHcCcEeEEeecCCChHHHHHHHHHHHhcCCC
Q 017700 140 TPGQFVNACRASLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKGLVRAVGVSNYGPNQLVKIHDYLTARGVP 219 (367)
Q Consensus 140 ~~~~i~~~l~~sL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~ 219 (367)
+.+.+++.++..++ |+.++|++|.|.-. ..++ |.+.+++|++....-..-.......+.+.....|
T Consensus 228 T~e~~~~~l~~~~~-l~~~~is~y~L~~~--pgT~---------l~~~~~~g~l~~~~~~~~~~~my~~~~~~L~~~G-- 293 (449)
T PRK09058 228 TPEIWQQDLAIVRD-LGLDGVDLYALNLL--PGTP---------LAKAVEKGKLPPPATPAERADMYAYGVEFLAKAG-- 293 (449)
T ss_pred CHHHHHHHHHHHHh-cCCCEEEEeccccC--CCCH---------HHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHHCC--
Confidence 77888888777654 89999999887732 1122 2234455654310000000111233334434333
Q ss_pred ceeEEeeecccccccchhhHHHHHHHcCCeEEEecCCCCccccC
Q 017700 220 LCSAQVQFSLLSMGENQLEIKNICDSLGIRLISYSPLGLGMLTG 263 (367)
Q Consensus 220 ~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~v~a~~pl~~G~L~~ 263 (367)
+.|...+-+.+......+....-..+..+++.++=+.|.+.+
T Consensus 294 --y~~yeis~far~~~~~~~~n~~~~~~~~~lg~G~gA~s~~~~ 335 (449)
T PRK09058 294 --WRQLSNSHWARTTRERNLYNLLIKQGAECLPFGAGAGGSIGG 335 (449)
T ss_pred --CeEEeeeeeecCCccccHHHHHHcCCCCEEEEccCcccccCC
Confidence 234444444332211123444455677888888888777654
No 144
>COG0761 lytB 4-Hydroxy-3-methylbut-2-enyl diphosphate reductase IspH [Lipid metabolism]
Probab=35.29 E-value=2.9e+02 Score=25.98 Aligned_cols=67 Identities=18% Similarity=0.237 Sum_probs=53.0
Q ss_pred hhHHHHHHHcCCeEEEecCCCCccccCCCCCCCCCCChhhhhhhhhccChHHHHHHHHHHHHHhCC------CHHHHHHH
Q 017700 237 LEIKNICDSLGIRLISYSPLGLGMLTGKYTPSKLPRGPRALLFRQILPGLKPLLRSLKEIAERRGK------TIPQVAIN 310 (367)
Q Consensus 237 ~~l~~~~~~~gi~v~a~~pl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~g~------t~~qlal~ 310 (367)
..+.+.+.+.++-++..++-.+.. .+|.++|++.|. ++.++=..
T Consensus 204 ~Avk~la~~~Dl~iVVG~~nSSNs------------------------------~rL~eiA~~~g~~aylId~~~ei~~~ 253 (294)
T COG0761 204 DAVKELAPEVDLVIVVGSKNSSNS------------------------------NRLAEIAKRHGKPAYLIDDAEEIDPE 253 (294)
T ss_pred HHHHHHhhcCCEEEEECCCCCccH------------------------------HHHHHHHHHhCCCeEEeCChHhCCHH
Confidence 367788888888888866655421 689999999885 67888889
Q ss_pred HHHcCCC-eeecCCCCHHHHHHHH
Q 017700 311 WCICKGT-IPIPGVKSVKQVEENL 333 (367)
Q Consensus 311 ~~l~~~~-~vi~g~~~~e~l~enl 333 (367)
|+..... .+-.|+|+|+-|-+++
T Consensus 254 w~~~~~~VGvTAGAStPd~lV~~V 277 (294)
T COG0761 254 WLKGVKTVGVTAGASTPDWLVQEV 277 (294)
T ss_pred HhcCccEEEEecCCCCCHHHHHHH
Confidence 9988666 6889999999888775
No 145
>PRK00087 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein; Reviewed
Probab=35.10 E-value=1.8e+02 Score=30.70 Aligned_cols=110 Identities=11% Similarity=0.105 Sum_probs=68.8
Q ss_pred cCcEeEEeecCCChHHHHHHHHHHHhcCCCceeEEeeeccccccc-chhhHHHHHHHcCCeEEEecCCCCccccCCCCCC
Q 017700 190 KGLVRAVGVSNYGPNQLVKIHDYLTARGVPLCSAQVQFSLLSMGE-NQLEIKNICDSLGIRLISYSPLGLGMLTGKYTPS 268 (367)
Q Consensus 190 ~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~-~~~~l~~~~~~~gi~v~a~~pl~~G~L~~~~~~~ 268 (367)
..++-.+-=++.+.+.+..+.+.++.....+.+ .-+++.... .+..+.+.|.+.++-++..+.-.+.
T Consensus 153 ~~~~~~~~QTT~~~~~~~~~~~~l~~~~~~~~~---~~tiC~at~~Rq~a~~~la~~~d~~~vvGg~~SsN--------- 220 (647)
T PRK00087 153 DKKICVVSQTTEKQENFEKVLKELKKKGKEVKV---FNTICNATEVRQEAAEKLAKKVDVMIVVGGKNSSN--------- 220 (647)
T ss_pred CCCEEEEEcCCCcHHHHHHHHHHHHHhCCCccc---CCCcchhhhhHHHHHHHHHhhCCEEEEECCCCCcc---------
Confidence 344544444556667777777776653322222 222222222 2336788888888777764333221
Q ss_pred CCCCChhhhhhhhhccChHHHHHHHHHHHHHhC------CCHHHHHHHHHHcCCC-eeecCCCCHHHHHHH
Q 017700 269 KLPRGPRALLFRQILPGLKPLLRSLKEIAERRG------KTIPQVAINWCICKGT-IPIPGVKSVKQVEEN 332 (367)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~g------~t~~qlal~~~l~~~~-~vi~g~~~~e~l~en 332 (367)
-.+|.++|++.| -++.++.-.|+-.... .+..|+|+|+.+-+.
T Consensus 221 ---------------------t~~L~~i~~~~~~~~~~ie~~~el~~~~~~~~~~vgitagaStP~~~i~~ 270 (647)
T PRK00087 221 ---------------------TTKLYEICKSNCTNTIHIENAGELPEEWFKGVKIIGVTAGASTPDWIIEE 270 (647)
T ss_pred ---------------------HHHHHHHHHHHCCCEEEECChHHCCHHHhCCCCEEEEEeccCCCHHHHHH
Confidence 068888998876 3788999999877666 689999999866544
No 146
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=34.92 E-value=3.5e+02 Score=26.02 Aligned_cols=29 Identities=28% Similarity=0.503 Sum_probs=20.7
Q ss_pred HHHHHHcCCC--eeecCCCCHHHHHHHHhcc
Q 017700 308 AINWCICKGT--IPIPGVKSVKQVEENLGAL 336 (367)
Q Consensus 308 al~~~l~~~~--~vi~g~~~~e~l~enl~a~ 336 (367)
.+.|+.+.+- ..-.|+.+.+.+++.++.+
T Consensus 139 lik~iA~~~kPiIlSTGma~~~ei~~av~~~ 169 (347)
T COG2089 139 LIKYIAKKGKPIILSTGMATIEEIEEAVAIL 169 (347)
T ss_pred HHHHHHhcCCCEEEEcccccHHHHHHHHHHH
Confidence 4566666554 5667888999988888765
No 147
>COG1082 IolE Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]
Probab=34.80 E-value=2.6e+02 Score=25.18 Aligned_cols=109 Identities=24% Similarity=0.248 Sum_probs=58.2
Q ss_pred HHHHHHHHcCcEeEEeecC--CChH---HHHHHHHHHHhcCCCceeEEeeec-ccccccch--------hhHHHHHHHcC
Q 017700 182 NGLVAMYEKGLVRAVGVSN--YGPN---QLVKIHDYLTARGVPLCSAQVQFS-LLSMGENQ--------LEIKNICDSLG 247 (367)
Q Consensus 182 ~~L~~l~~~G~ir~iGvS~--~~~~---~l~~~~~~~~~~~~~~~~~q~~~n-~~~~~~~~--------~~l~~~~~~~g 247 (367)
+.++..++-| ...+++.. .-.. .+.++.+.++..|..+...+...+ .+...... .+.++.|++.|
T Consensus 19 ~~l~~~~~~G-~~gvEi~~~~~~~~~~~~~~~l~~~l~~~gl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~lg 97 (274)
T COG1082 19 EILRKAAELG-FDGVELSPGDLFPADYKELAELKELLADYGLEITSLAPFSNNLLSPDEEEREEALEELKRAIELAKELG 97 (274)
T ss_pred HHHHHHHHhC-CCeEecCCcccCCchhhhHHHHHHHHHHcCcEEEeecccCCCcCCCchhhHHHHHHHHHHHHHHHHHcC
Confidence 4566666667 66666663 1111 156666666666666655555554 44433211 23788999999
Q ss_pred CeEEEecCCCCccccCCCCCCCCCCChhhhhhhhhccChHHHHHHHHHHHHHhCCC
Q 017700 248 IRLISYSPLGLGMLTGKYTPSKLPRGPRALLFRQILPGLKPLLRSLKEIAERRGKT 303 (367)
Q Consensus 248 i~v~a~~pl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~g~t 303 (367)
+.++...+-....-.. .. .+.. ..+...+.+..+.++|+++++.
T Consensus 98 ~~~vv~~~g~~~~~~~---~~-~~~~--------~~~~~~~~l~~l~~~a~~~~i~ 141 (274)
T COG1082 98 AKVVVVHPGLGAGADD---PD-SPEE--------ARERWAEALEELAEIAEELGIG 141 (274)
T ss_pred CCeEEeecccCCcCCC---CC-CCcc--------cHHHHHHHHHHHHHHHHHhCCc
Confidence 8877654433221100 00 0000 1123445667888888877543
No 148
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=34.76 E-value=4.1e+02 Score=25.25 Aligned_cols=135 Identities=16% Similarity=0.177 Sum_probs=69.0
Q ss_pred CCHHHHHHHHHHHHHC-CCCEEeCCCCcCCCCCCChHHHHHHHHHhhCCCCCCCCCcEEEEeeccCCCCCCChHHHHHHH
Q 017700 70 SMDSQLQQTFNLAVEN-GINLFDTADSYGTGRLNGKSEKLLGKFISEIPGQKQVQNNIVIATKFAAYPWRLTPGQFVNAC 148 (367)
Q Consensus 70 ~~~~~a~~~l~~A~~~-Gi~~~DTA~~Yg~~~~~g~sE~~lG~al~~~~~~~~~R~~v~i~tK~~~~~~~~~~~~i~~~l 148 (367)
.+.++..+++++..++ ||+.+--+. |. +.- .+...+.+.++...+- .....+.+.|+.... .+..+...+
T Consensus 119 l~~~e~~~~i~~i~~~~~I~~VilSG--GD-Pl~-~~~~~L~~ll~~l~~i-~~v~~iri~Tr~~v~----~p~rit~el 189 (321)
T TIGR03822 119 LSPAELDAAFAYIADHPEIWEVILTG--GD-PLV-LSPRRLGDIMARLAAI-DHVKIVRFHTRVPVA----DPARVTPAL 189 (321)
T ss_pred CCHHHHHHHHHHHHhCCCccEEEEeC--CC-ccc-CCHHHHHHHHHHHHhC-CCccEEEEeCCCccc----ChhhcCHHH
Confidence 4567788888877655 887553111 11 100 0122233333222110 023345677775322 233344444
Q ss_pred HHHHhhhCCCcEEEEEeccCCCCCCChhHHHHHHHHHHHHHcCcEeE----E--eecCCChHHHHHHHHHHHhcCCC
Q 017700 149 RASLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKGLVRA----V--GVSNYGPNQLVKIHDYLTARGVP 219 (367)
Q Consensus 149 ~~sL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~~~~L~~l~~~G~ir~----i--GvS~~~~~~l~~~~~~~~~~~~~ 219 (367)
-+.|+..|. . ..+.+|..... . -.++++++++.|++.|..-. + |+ |.+.+.+.++.+.+...++.
T Consensus 190 l~~L~~~g~-~-v~i~l~~~h~~--e-l~~~~~~ai~~L~~~Gi~v~~q~vLl~gv-Nd~~~~l~~l~~~l~~~gv~ 260 (321)
T TIGR03822 190 IAALKTSGK-T-VYVALHANHAR--E-LTAEARAACARLIDAGIPMVSQSVLLRGV-NDDPETLAALMRAFVECRIK 260 (321)
T ss_pred HHHHHHcCC-c-EEEEecCCChh--h-cCHHHHHHHHHHHHcCCEEEEEeeEeCCC-CCCHHHHHHHHHHHHhcCCe
Confidence 456666663 2 35777754211 1 13567888888988886211 1 33 45666777777766666653
No 149
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=34.16 E-value=1.7e+02 Score=26.51 Aligned_cols=69 Identities=17% Similarity=0.142 Sum_probs=47.9
Q ss_pred CCChHHHHHHHHHHHhhhCCCc--------------------------EEEEEeccCCCCCCChhHHHHHHHHHHHHHcC
Q 017700 138 RLTPGQFVNACRASLARLQIEQ--------------------------IGIGQLHWSTANYAPPQELALWNGLVAMYEKG 191 (367)
Q Consensus 138 ~~~~~~i~~~l~~sL~~Lg~d~--------------------------iDl~~lH~~~~~~~~~~~~~~~~~L~~l~~~G 191 (367)
..+.+.+++.+++.|+.+|... .++++|..|....++....++++.+.+|+++|
T Consensus 109 g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~ 188 (235)
T COG1122 109 GLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEG 188 (235)
T ss_pred CCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcC
Confidence 4477789999999999999643 45555555544445556678999999999997
Q ss_pred cEeEEeecCCChHHHH
Q 017700 192 LVRAVGVSNYGPNQLV 207 (367)
Q Consensus 192 ~ir~iGvS~~~~~~l~ 207 (367)
.+.-| +.+|+.+.+.
T Consensus 189 ~~tii-~~tHd~~~~~ 203 (235)
T COG1122 189 GKTII-IVTHDLELVL 203 (235)
T ss_pred CCeEE-EEeCcHHHHH
Confidence 65555 4455544433
No 150
>COG0422 ThiC Thiamine biosynthesis protein ThiC [Coenzyme metabolism]
Probab=34.10 E-value=4.6e+02 Score=25.73 Aligned_cols=146 Identities=15% Similarity=0.111 Sum_probs=80.9
Q ss_pred CHHHHHHHHHHHHHCCCCEE-eCCCCcCCCCCCChHHHHHHHHHhhCCCCCCCCCcEEEEe--------eccCCCCCCCh
Q 017700 71 MDSQLQQTFNLAVENGINLF-DTADSYGTGRLNGKSEKLLGKFISEIPGQKQVQNNIVIAT--------KFAAYPWRLTP 141 (367)
Q Consensus 71 ~~~~a~~~l~~A~~~Gi~~~-DTA~~Yg~~~~~g~sE~~lG~al~~~~~~~~~R~~v~i~t--------K~~~~~~~~~~ 141 (367)
+-++-.+-+..|.+-|...+ |-+ ..|+ -..+.+++-.. .++-|-| |.....-+++.
T Consensus 76 ~i~~EveK~~~A~~~GADtvMDLS-tGgd-------l~eiR~~ii~~-------s~vPvGTVPIYqA~~~~~~~~~~~t~ 140 (432)
T COG0422 76 DIDEEVEKAVWAIKWGADTVMDLS-TGGD-------LHEIREWIIRN-------SPVPVGTVPIYQALEEVNGKVEDLTE 140 (432)
T ss_pred CHHHHHHHHHHHHHhCcceeEecc-cCCC-------HHHHHHHHHhc-------CCCCcCCchHHHHHHHHhcchhhCCH
Confidence 44556677888999996544 554 3355 44455554321 1121211 11111224578
Q ss_pred HHHHHHHHHHHhhhCCCcEEEEEeccCCCCCCChhHHHHHHHHHHHHHcCcEeEEeecCCChHHHHHHHHHHHhcCCCce
Q 017700 142 GQFVNACRASLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKGLVRAVGVSNYGPNQLVKIHDYLTARGVPLC 221 (367)
Q Consensus 142 ~~i~~~l~~sL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~ 221 (367)
+.+.+.+++..+ +-+|.+-||.- -.++.++.+++.|++--| ||- +..-+....-. ++
T Consensus 141 d~~~~~v~~qa~----~GVdfmTIHaG----------V~~~~~~~~~~~~R~~gi-VSR-GGsi~a~Wml~---~~---- 197 (432)
T COG0422 141 DDFFDTVEKQAE----QGVDFMTIHAG----------VLLEYVPRTKRSGRVTGI-VSR-GGSIMAAWMLH---NH---- 197 (432)
T ss_pred HHHHHHHHHHHH----hCCcEEEeehh----------hhHHHHHHHHhcCceeee-ecc-chHHHHHHHHH---cC----
Confidence 888888887766 34677889942 157899999999986554 444 43333322221 11
Q ss_pred eEEeeecccccccchhhHHHHHHHcCCeEEEecCCCCcc
Q 017700 222 SAQVQFSLLSMGENQLEIKNICDSLGIRLISYSPLGLGM 260 (367)
Q Consensus 222 ~~q~~~n~~~~~~~~~~l~~~~~~~gi~v~a~~pl~~G~ 260 (367)
.=|++... .+ .+++.|++++|.+--.-.+..|-
T Consensus 198 ----~ENply~~-fd-~lleI~k~yDvtlSLGDglRPG~ 230 (432)
T COG0422 198 ----KENPLYEH-FD-ELLEIFKEYDVTLSLGDGLRPGC 230 (432)
T ss_pred ----CcCchhhh-HH-HHHHHHHHhCeeeeccCCCCCCc
Confidence 11233222 22 78888888888875444444443
No 151
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=33.95 E-value=3.2e+02 Score=25.27 Aligned_cols=111 Identities=7% Similarity=0.024 Sum_probs=62.8
Q ss_pred CCCChHHHHHHHHHHHhhhCCCcEEEEEeccCCCCCCChhHHHHHHHHHHHHH--cCcE-eEEeecCCChHHHHHHHHHH
Q 017700 137 WRLTPGQFVNACRASLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYE--KGLV-RAVGVSNYGPNQLVKIHDYL 213 (367)
Q Consensus 137 ~~~~~~~i~~~l~~sL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~~~~L~~l~~--~G~i-r~iGvS~~~~~~l~~~~~~~ 213 (367)
..++.+.+++.++..++ -|+ |=+++-....+...+..+|-.+.++..++ .|++ -..|++..+..+..++.+.+
T Consensus 14 g~iD~~~~~~~i~~l~~-~Gv---~Gi~~~GstGE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~s~~~~i~~a~~a 89 (285)
T TIGR00674 14 GSVDFAALEKLIDFQIE-NGT---DAIVVVGTTGESPTLSHEEHKKVIEFVVDLVNGRVPVIAGTGSNATEEAISLTKFA 89 (285)
T ss_pred CCcCHHHHHHHHHHHHH-cCC---CEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCeEEEeCCCccHHHHHHHHHHH
Confidence 34578888888887775 554 44444322222223333333444444443 3543 56788887777777777777
Q ss_pred HhcCCCceeEEeeecccccccchhhHHHH----HHHcCCeEEEec
Q 017700 214 TARGVPLCSAQVQFSLLSMGENQLEIKNI----CDSLGIRLISYS 254 (367)
Q Consensus 214 ~~~~~~~~~~q~~~n~~~~~~~~~~l~~~----~~~~gi~v~a~~ 254 (367)
+..|.+-.++..+|... ..+.+++++ |+.-+++|+.|.
T Consensus 90 ~~~Gad~v~v~pP~y~~---~~~~~i~~~~~~i~~~~~~pi~lYn 131 (285)
T TIGR00674 90 EDVGADGFLVVTPYYNK---PTQEGLYQHFKAIAEEVDLPIILYN 131 (285)
T ss_pred HHcCCCEEEEcCCcCCC---CCHHHHHHHHHHHHhcCCCCEEEEE
Confidence 87777655555554332 112244443 445578888884
No 152
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=33.86 E-value=3.9e+02 Score=24.82 Aligned_cols=110 Identities=13% Similarity=0.056 Sum_probs=62.0
Q ss_pred CCCChHHHHHHHHHHHhhhCCCcEEEEEeccCCCCCCChhHHHHHHHHHHHHH--cCcE-eEEeecCCChHHHHHHHHHH
Q 017700 137 WRLTPGQFVNACRASLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYE--KGLV-RAVGVSNYGPNQLVKIHDYL 213 (367)
Q Consensus 137 ~~~~~~~i~~~l~~sL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~~~~L~~l~~--~G~i-r~iGvS~~~~~~l~~~~~~~ 213 (367)
...+.+.+++-++..++ -|+ |-+++-....+...+..+|-.+.++..++ .|++ --.|++. +..+..++.+.+
T Consensus 16 g~iD~~~l~~l~~~l~~-~Gv---~gi~v~GstGE~~~Ls~eEr~~l~~~~~~~~~~~~pvi~gv~~-~t~~~i~~a~~a 90 (289)
T cd00951 16 GSFDEDAYRAHVEWLLS-YGA---AALFAAGGTGEFFSLTPDEYAQVVRAAVEETAGRVPVLAGAGY-GTATAIAYAQAA 90 (289)
T ss_pred CCcCHHHHHHHHHHHHH-cCC---CEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCCEEEecCC-CHHHHHHHHHHH
Confidence 45678888888888765 354 44444433223333333333444444444 3443 3457765 667766677778
Q ss_pred HhcCCCceeEEeeecccccccchhhHHH----HHHHcCCeEEEec
Q 017700 214 TARGVPLCSAQVQFSLLSMGENQLEIKN----ICDSLGIRLISYS 254 (367)
Q Consensus 214 ~~~~~~~~~~q~~~n~~~~~~~~~~l~~----~~~~~gi~v~a~~ 254 (367)
+..|.+-.++..+|... ..+.++++ .+..-+++++.|.
T Consensus 91 ~~~Gad~v~~~pP~y~~---~~~~~i~~~f~~v~~~~~~pi~lYn 132 (289)
T cd00951 91 EKAGADGILLLPPYLTE---APQEGLYAHVEAVCKSTDLGVIVYN 132 (289)
T ss_pred HHhCCCEEEECCCCCCC---CCHHHHHHHHHHHHhcCCCCEEEEe
Confidence 88887755555554321 11224444 3455589999997
No 153
>PRK00912 ribonuclease P protein component 3; Provisional
Probab=33.86 E-value=3.5e+02 Score=24.24 Aligned_cols=146 Identities=8% Similarity=-0.007 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHHHCCCCEEeCCCCcCCCCCCChHHHHHHHHHhhCCCCCCCCCcEEEEeeccCCCCCCChHHHHHHHHHH
Q 017700 72 DSQLQQTFNLAVENGINLFDTADSYGTGRLNGKSEKLLGKFISEIPGQKQVQNNIVIATKFAAYPWRLTPGQFVNACRAS 151 (367)
Q Consensus 72 ~~~a~~~l~~A~~~Gi~~~DTA~~Yg~~~~~g~sE~~lG~al~~~~~~~~~R~~v~i~tK~~~~~~~~~~~~i~~~l~~s 151 (367)
.....++++.|.+.|+..+=.+++.... ...+. ..+.++. =+|+...-+... ..+.+..-+++.
T Consensus 15 ~~~~~e~i~~A~~~Gl~~i~itdH~~~~---~~~~~-~~~~~~~--------i~Il~GiEi~~~----~~~~~~~~~~~~ 78 (237)
T PRK00912 15 YDTVLRLISEASHLGYSGIALSNHSDKY---PESKP-ELEDLLG--------FEIFRGVEIVAS----NPSKLRGLVGKF 78 (237)
T ss_pred cchHHHHHHHHHHCCCCEEEEecCcccc---cchhH-HHHHhcC--------CcEEeeEEEecC----CHHHHHHHHHhc
Confidence 3568899999999999988766664320 00111 1111111 122222222211 344444333332
Q ss_pred HhhhCCCcEEEEEeccCCCCCCChhHHHHHHHHHHHHHcCcEeEEeecCC---ChHHHHHHHHHHHhcCCCceeEEeeec
Q 017700 152 LARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKGLVRAVGVSNY---GPNQLVKIHDYLTARGVPLCSAQVQFS 228 (367)
Q Consensus 152 L~~Lg~d~iDl~~lH~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvS~~---~~~~l~~~~~~~~~~~~~~~~~q~~~n 228 (367)
+ +.+|++.+| +. . + .....+.+.+.|--||--.. ....-+.+.+.|...++ ++.+.++
T Consensus 79 ~-----~~~d~v~v~-~~---~----~---~~~~~a~~~~~vdIi~hp~~~~~~~~~~~~~~~~a~~~gv---~lEIn~s 139 (237)
T PRK00912 79 R-----KKVDVLAVH-GG---D----E---KVNRAACENPRVDILSHPYTKRKDSGINHVLAKEAARNNV---AIEFNLR 139 (237)
T ss_pred c-----CcccEEEEe-CC---C----H---HHHHHHHccCCCcEEeCccccCCCCCcCHHHHHHHHHCCe---EEEEEch
Confidence 2 357888899 31 1 1 22235777888877775432 11112355566665553 4556666
Q ss_pred cccccc--------ch-hhHHHHHHHcCCeEEE
Q 017700 229 LLSMGE--------NQ-LEIKNICDSLGIRLIS 252 (367)
Q Consensus 229 ~~~~~~--------~~-~~l~~~~~~~gi~v~a 252 (367)
.+-... .. ..++..|++.|++++.
T Consensus 140 ~~~~~~~~~r~~~~~~~~~~~~~~~~~g~piii 172 (237)
T PRK00912 140 DILKSRGGRRARTLSNFRDNLALARKYDFPLVL 172 (237)
T ss_pred HhhhhcccHHHHHHHHHHHHHHHHHhcCCCEEE
Confidence 542211 11 3689999999988864
No 154
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=33.77 E-value=2.7e+02 Score=24.80 Aligned_cols=89 Identities=17% Similarity=0.074 Sum_probs=53.7
Q ss_pred ChHHHHHHHHHHHhhhCCCcEEEEEeccCCCCCCChhHHHHHHHHHHHHHcCc-EeEEeecC-CChHHHHHHHHHHHhcC
Q 017700 140 TPGQFVNACRASLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKGL-VRAVGVSN-YGPNQLVKIHDYLTARG 217 (367)
Q Consensus 140 ~~~~i~~~l~~sL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~~~~L~~l~~~G~-ir~iGvS~-~~~~~l~~~~~~~~~~~ 217 (367)
+++++..+ ..+|.||+=+++.-.. +.+.. .+...++.+.-. ++.+||.. .+.+.+.++.+.
T Consensus 11 ~~eda~~a-----~~~gad~iG~If~~~S-pR~Vs------~~~a~~i~~~v~~~~~VgVf~n~~~~~i~~i~~~----- 73 (208)
T COG0135 11 RLEDAKAA-----AKAGADYIGFIFVPKS-PRYVS------PEQAREIASAVPKVKVVGVFVNESIEEILEIAEE----- 73 (208)
T ss_pred CHHHHHHH-----HHcCCCEEEEEEcCCC-CCcCC------HHHHHHHHHhCCCCCEEEEECCCCHHHHHHHHHh-----
Confidence 45555443 5689999987766521 12222 244445555444 78999854 455666666665
Q ss_pred CCceeEEeeecccccccchhhHHHHHHHcC-CeEE
Q 017700 218 VPLCSAQVQFSLLSMGENQLEIKNICDSLG-IRLI 251 (367)
Q Consensus 218 ~~~~~~q~~~n~~~~~~~~~~l~~~~~~~g-i~v~ 251 (367)
..++.+|++-.. ..+.++..++.. +.|+
T Consensus 74 ~~ld~VQlHG~e------~~~~~~~l~~~~~~~v~ 102 (208)
T COG0135 74 LGLDAVQLHGDE------DPEYIDQLKEELGVPVI 102 (208)
T ss_pred cCCCEEEECCCC------CHHHHHHHHhhcCCceE
Confidence 678999998752 225666666654 5553
No 155
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=33.74 E-value=3.8e+02 Score=24.61 Aligned_cols=106 Identities=12% Similarity=0.032 Sum_probs=64.3
Q ss_pred CChHHHHHHHHHHHhhhCCCcEEEEEeccCCCCCCChhHHHHHHHHHHHHHcCcEeEEeecCCChHHHHHHHHHHHhcCC
Q 017700 139 LTPGQFVNACRASLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKGLVRAVGVSNYGPNQLVKIHDYLTARGV 218 (367)
Q Consensus 139 ~~~~~i~~~l~~sL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~ 218 (367)
.+.++..+-.+-..+-+++++|-|=.+..+ .+.--+..+++++.++|.++|.+-- =+++-++...+.+.+.
T Consensus 73 ~ta~eAv~~a~lare~~~~~~iKlEVi~d~--~~Llpd~~~tv~aa~~L~~~Gf~vl-pyc~dd~~~ar~l~~~------ 143 (248)
T cd04728 73 RTAEEAVRTARLAREALGTDWIKLEVIGDD--KTLLPDPIETLKAAEILVKEGFTVL-PYCTDDPVLAKRLEDA------ 143 (248)
T ss_pred CCHHHHHHHHHHHHHHhCCCeEEEEEecCc--cccccCHHHHHHHHHHHHHCCCEEE-EEeCCCHHHHHHHHHc------
Confidence 378888888888889999999998777743 2222245678999999999998654 2344455544444443
Q ss_pred CceeEEeeecccc--cccchhhHHHHHHH-cCCeEEEe
Q 017700 219 PLCSAQVQFSLLS--MGENQLEIKNICDS-LGIRLISY 253 (367)
Q Consensus 219 ~~~~~q~~~n~~~--~~~~~~~l~~~~~~-~gi~v~a~ 253 (367)
.+++++.-=+++- +...+.++++...+ .++.|++-
T Consensus 144 G~~~vmPlg~pIGsg~Gi~~~~~I~~I~e~~~vpVI~e 181 (248)
T cd04728 144 GCAAVMPLGSPIGSGQGLLNPYNLRIIIERADVPVIVD 181 (248)
T ss_pred CCCEeCCCCcCCCCCCCCCCHHHHHHHHHhCCCcEEEe
Confidence 3344432112221 11111245555555 47888775
No 156
>TIGR01928 menC_lowGC/arch o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are low GC gram positive bacteria and archaea. Also included in the seed and in the model are enzymes with the com-name of N-acylamino acid racemase (or the more general term, racemase / racemase family), which refers to the enzyme's industrial application as racemases, and not to its biological function as o-succinylbenzoic acid synthetase.
Probab=33.70 E-value=4.2e+02 Score=25.09 Aligned_cols=154 Identities=12% Similarity=-0.001 Sum_probs=86.7
Q ss_pred CHHHHHHHHHHHHHCCCCEEeCCCCcCCCCCCChHHHHHHHHHhhCCCCCCCCCcEEEEeeccCCCCCCChHHHHHHHHH
Q 017700 71 MDSQLQQTFNLAVENGINLFDTADSYGTGRLNGKSEKLLGKFISEIPGQKQVQNNIVIATKFAAYPWRLTPGQFVNACRA 150 (367)
Q Consensus 71 ~~~~a~~~l~~A~~~Gi~~~DTA~~Yg~~~~~g~sE~~lG~al~~~~~~~~~R~~v~i~tK~~~~~~~~~~~~i~~~l~~ 150 (367)
+.++..+.+..+.+.|++.|=.-- +. ..+..+=+++++. .+.-++.|=.-. ..+.+..+ .-+
T Consensus 132 ~~~~~~~~a~~~~~~Gf~~~KiKv--~~-----~~d~~~v~~vr~~----~~~~~l~vDaN~-----~~~~~~a~--~~~ 193 (324)
T TIGR01928 132 NDEQMLKQIESLKATGYKRIKLKI--TP-----QIMHQLVKLRRLR----FPQIPLVIDANE-----SYDLQDFP--RLK 193 (324)
T ss_pred CHHHHHHHHHHHHHcCCcEEEEEe--CC-----chhHHHHHHHHHh----CCCCcEEEECCC-----CCCHHHHH--HHH
Confidence 346677778888899999873211 11 1122233344442 111123333221 22555532 124
Q ss_pred HHhhhCCCcEEEEEeccCCCCCCChhHHHHHHHHHHHHHcCcEe-EEeecCCChHHHHHHHHHHHhcCCCceeEEeeecc
Q 017700 151 SLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKGLVR-AVGVSNYGPNQLVKIHDYLTARGVPLCSAQVQFSL 229 (367)
Q Consensus 151 sL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~~~~L~~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~ 229 (367)
.|+.+ ++.++-.|- +.+ -++.+.+|++...+. ..|=|.++...+..+++. .-++++|+..+.
T Consensus 194 ~l~~~-----~~~~iEeP~----~~~---~~~~~~~l~~~~~~pia~dEs~~~~~~~~~~~~~-----~~~dvi~~d~~~ 256 (324)
T TIGR01928 194 ELDRY-----QLLYIEEPF----KID---DLSMLDELAKGTITPICLDESITSLDDARNLIEL-----GNVKVINIKPGR 256 (324)
T ss_pred HHhhC-----CCcEEECCC----Chh---HHHHHHHHHhhcCCCEeeCCCcCCHHHHHHHHHc-----CCCCEEEeCcch
Confidence 44443 445555442 111 357788888876553 667777788887776654 347788887665
Q ss_pred cccccchhhHHHHHHHcCCeEEEecCCCCc
Q 017700 230 LSMGENQLEIKNICDSLGIRLISYSPLGLG 259 (367)
Q Consensus 230 ~~~~~~~~~l~~~~~~~gi~v~a~~pl~~G 259 (367)
+---..-.++...|+.+|+.++..+.+..|
T Consensus 257 ~GGit~~~~~~~~A~~~gi~~~~~~~~es~ 286 (324)
T TIGR01928 257 LGGLTEVQKAIETCREHGAKVWIGGMLETG 286 (324)
T ss_pred hcCHHHHHHHHHHHHHcCCeEEEcceEccc
Confidence 422222237899999999999887666554
No 157
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=33.66 E-value=5.2e+02 Score=26.17 Aligned_cols=236 Identities=10% Similarity=0.072 Sum_probs=115.3
Q ss_pred CCHHHHHHHHHHHHHCCCCEEeCC--------CCcCCCCCCChHHHHHHHHHhhCCCCCCCCCcEEEEeeccCCC--CCC
Q 017700 70 SMDSQLQQTFNLAVENGINLFDTA--------DSYGTGRLNGKSEKLLGKFISEIPGQKQVQNNIVIATKFAAYP--WRL 139 (367)
Q Consensus 70 ~~~~~a~~~l~~A~~~Gi~~~DTA--------~~Yg~~~~~g~sE~~lG~al~~~~~~~~~R~~v~i~tK~~~~~--~~~ 139 (367)
+..++...+....-+.|+..+++. --|-. ....+.|..+-+..+ .-.+-.... |.+. +..
T Consensus 32 ~~t~d~l~ia~~ld~~G~~siE~wGGAtfd~~~rfl~----edpwerlr~~r~~~~-----nt~lqmLlR-G~n~vgy~~ 101 (468)
T PRK12581 32 LSIEDMLPVLTILDKIGYYSLECWGGATFDACIRFLN----EDPWERLRTLKKGLP-----NTRLQMLLR-GQNLLGYRH 101 (468)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEecCCcchhhhhcccC----CCHHHHHHHHHHhCC-----CCceeeeec-cccccCccC
Confidence 556777777777777788887763 22222 334566666555532 223332222 2211 111
Q ss_pred ChHHHHHHHHHHHhhhCCCcEEEEEeccCCCCCCChhHHHHHHHHHHHHHcCcEeEEeecC-----CChHHHHHHHHHHH
Q 017700 140 TPGQFVNACRASLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKGLVRAVGVSN-----YGPNQLVKIHDYLT 214 (367)
Q Consensus 140 ~~~~i~~~l~~sL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvS~-----~~~~~l~~~~~~~~ 214 (367)
-++++.+.+-+-..+-|+ |++-+-.. ... .+.+..+++..|+.|++....++- |+.+-+.++.+.+.
T Consensus 102 ypddvv~~fv~~a~~~Gi---di~Rifd~---lnd--~~n~~~ai~~ak~~G~~~~~~i~yt~sp~~t~~y~~~~a~~l~ 173 (468)
T PRK12581 102 YADDIVDKFISLSAQNGI---DVFRIFDA---LND--PRNIQQALRAVKKTGKEAQLCIAYTTSPVHTLNYYLSLVKELV 173 (468)
T ss_pred CcchHHHHHHHHHHHCCC---CEEEEccc---CCC--HHHHHHHHHHHHHcCCEEEEEEEEEeCCcCcHHHHHHHHHHHH
Confidence 245666555444445554 44444321 122 233678889999999985444433 22333434444344
Q ss_pred hcCCCceeEEeeecccccccchhhHHHHHHHc---CCeEEEecCCCCccccCCCCCCCCCCChhhhhhhhhccChHHHHH
Q 017700 215 ARGVPLCSAQVQFSLLSMGENQLEIKNICDSL---GIRLISYSPLGLGMLTGKYTPSKLPRGPRALLFRQILPGLKPLLR 291 (367)
Q Consensus 215 ~~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~~---gi~v~a~~pl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (367)
..|.+..++-=..-++.+..-. +++...++. -|.++.+..++.+.- .
T Consensus 174 ~~Gad~I~IkDtaG~l~P~~v~-~Lv~alk~~~~~pi~~H~Hnt~GlA~A-----------------------------n 223 (468)
T PRK12581 174 EMGADSICIKDMAGILTPKAAK-ELVSGIKAMTNLPLIVHTHATSGISQM-----------------------------T 223 (468)
T ss_pred HcCCCEEEECCCCCCcCHHHHH-HHHHHHHhccCCeEEEEeCCCCccHHH-----------------------------H
Confidence 4443322211111222222222 556666553 245566666665421 1
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCCeeecCCCCHHHHHHHHhccCC--CCCHHHHHHHHHHHhhCChhhh
Q 017700 292 SLKEIAERRGKTIPQVAINWCICKGTIPIPGVKSVKQVEENLGALGW--RLSSDELLELEYAALESPQRMI 360 (367)
Q Consensus 292 ~l~~la~~~g~t~~qlal~~~l~~~~~vi~g~~~~e~l~enl~a~~~--~L~~e~~~~l~~~~~~~~~~~~ 360 (367)
.+.. -+.|++..+.++. |..--.|--..|.+-..++..+. .++.+.+.++.+.++.+.+.+.
T Consensus 224 ~laA--ieAGad~vD~ai~-----g~g~gagN~~tE~lv~~L~~~g~~tgiDl~~L~~~a~~~~~vr~~y~ 287 (468)
T PRK12581 224 YLAA--VEAGADRIDTALS-----PFSEGTSQPATESMYLALKEAGYDITLDETLLEQAANHLRQARQKYL 287 (468)
T ss_pred HHHH--HHcCCCEEEeecc-----ccCCCcCChhHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHhc
Confidence 2222 2445555554443 22222233344666666665554 5777777777776666555544
No 158
>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]
Probab=33.46 E-value=1.1e+02 Score=30.01 Aligned_cols=82 Identities=21% Similarity=0.186 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHcC-cEeEEeecCCChHHHHHHHHHHHhcCCCceeEEeeecccc-cccchhhHHHHHHHcCCeEEEec
Q 017700 177 ELALWNGLVAMYEKG-LVRAVGVSNYGPNQLVKIHDYLTARGVPLCSAQVQFSLLS-MGENQLEIKNICDSLGIRLISYS 254 (367)
Q Consensus 177 ~~~~~~~L~~l~~~G-~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~-~~~~~~~l~~~~~~~gi~v~a~~ 254 (367)
...+++.+..|..+| .|.|+.|...+.-.++++.+.... +...+.+|.--|-.- -.+- .++-+.|+++|+.++.-.
T Consensus 101 H~aVl~~~~~Le~~g~~Vtyl~V~~~G~v~~e~L~~al~~-~T~LVSim~aNnE~G~IQpI-~ei~~i~k~~~i~fHvDA 178 (386)
T COG1104 101 HPAVLNTCRYLERQGFEVTYLPVDSNGLVDLEQLEEALRP-DTILVSIMHANNETGTIQPI-AEIGEICKERGILFHVDA 178 (386)
T ss_pred cHHHHHHHHHHHhcCCeEEEeCCCCCCeEcHHHHHHhcCC-CceEEEEEecccCeeecccH-HHHHHHHHHcCCeEEEeh
Confidence 344677777776666 577777766554444444443221 111222222221110 0111 256677777766665554
Q ss_pred CCCCcc
Q 017700 255 PLGLGM 260 (367)
Q Consensus 255 pl~~G~ 260 (367)
..+-|.
T Consensus 179 vQa~Gk 184 (386)
T COG1104 179 VQAVGK 184 (386)
T ss_pred hhhcCc
Confidence 444443
No 159
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=33.24 E-value=4.6e+02 Score=25.41 Aligned_cols=26 Identities=19% Similarity=0.350 Sum_probs=20.4
Q ss_pred ChHHHHHHHHHHHhhhCCCcEEEEEec
Q 017700 140 TPGQFVNACRASLARLQIEQIGIGQLH 166 (367)
Q Consensus 140 ~~~~i~~~l~~sL~~Lg~d~iDl~~lH 166 (367)
+.+.+++.++..+ .|+.++|.+|.+.
T Consensus 168 t~~~~~~~l~~~~-~l~~~~is~y~l~ 193 (370)
T PRK06294 168 SLSDFIVDLHQAI-TLPITHISLYNLT 193 (370)
T ss_pred CHHHHHHHHHHHH-ccCCCeEEEeeeE
Confidence 7777888777766 4788888888877
No 160
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=33.22 E-value=4.2e+02 Score=24.92 Aligned_cols=188 Identities=12% Similarity=0.130 Sum_probs=91.9
Q ss_pred ceecccccCCCCcCCCCCCCHHHHHHHHHHHHHC-CCCEEeCCCCcCCCCCCChHHHHHHHHHhhCCCCCCCCCcEEEEe
Q 017700 52 MGFGTWAWGNQFLWGYQESMDSQLQQTFNLAVEN-GINLFDTADSYGTGRLNGKSEKLLGKFISEIPGQKQVQNNIVIAT 130 (367)
Q Consensus 52 lglGt~~~g~~~~~g~~~~~~~~a~~~l~~A~~~-Gi~~~DTA~~Yg~~~~~g~sE~~lG~al~~~~~~~~~R~~v~i~t 130 (367)
|.+|.+.-+. +.....+.++..+.+...++. |.+.+|--..|+... ...+-..+-++|+.+.+ .+.++.|+.
T Consensus 72 iS~GG~~g~~---~~~~~~~~~~~~~a~~~~i~~y~~dgiDfDiE~~~~~-d~~~~~~~~~al~~Lq~---~~p~l~vs~ 144 (294)
T cd06543 72 VSFGGASGTP---LATSCTSADQLAAAYQKVIDAYGLTHLDFDIEGGALT-DTAAIDRRAQALALLQK---EYPDLKISF 144 (294)
T ss_pred EEecCCCCCc---cccCcccHHHHHHHHHHHHHHhCCCeEEEeccCCccc-cchhHHHHHHHHHHHHH---HCCCcEEEE
Confidence 4567665221 222334555555555556644 999999877766410 01122455666666432 233566666
Q ss_pred eccCCCCCCChHHHHHHHHHHHhhhC--CCcEEEEEeccCCCC-CCChhHHHHHHHHHHHHHcCcEeEEeecCCChHHHH
Q 017700 131 KFAAYPWRLTPGQFVNACRASLARLQ--IEQIGIGQLHWSTAN-YAPPQELALWNGLVAMYEKGLVRAVGVSNYGPNQLV 207 (367)
Q Consensus 131 K~~~~~~~~~~~~i~~~l~~sL~~Lg--~d~iDl~~lH~~~~~-~~~~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~l~ 207 (367)
-+...+..+.++.+ .+-+..+.-| +|+|.++-+..-... ...+ -..+..+.+.++.+=+--+=+ ++..++-
T Consensus 145 Tlp~~p~gl~~~g~--~~l~~a~~~Gv~~d~VNiMtmDyg~~~~~~~m-g~~a~~aa~~~~~ql~~~~~~---~s~~~~~ 218 (294)
T cd06543 145 TLPVLPTGLTPDGL--NVLEAAAANGVDLDTVNIMTMDYGSSAGSQDM-GAAAISAAESLHDQLKDLYPK---LSDAELW 218 (294)
T ss_pred ecCCCCCCCChhHH--HHHHHHHHcCCCcceeeeeeecCCCCCCcccH-HHHHHHHHHHHHHHHHHHccC---CCHHHHH
Confidence 66544444444432 2444444455 456666555432211 1122 223456665555542211112 2333333
Q ss_pred HHHHHHHhcCCCceeEEeeec--ccccccchhhHHHHHHHcCCeEEEecCCCCc
Q 017700 208 KIHDYLTARGVPLCSAQVQFS--LLSMGENQLEIKNICDSLGIRLISYSPLGLG 259 (367)
Q Consensus 208 ~~~~~~~~~~~~~~~~q~~~n--~~~~~~~~~~l~~~~~~~gi~v~a~~pl~~G 259 (367)
..+ ++.|..=+.... ++.....+ .+.++++++||+-++|-.+.+.
T Consensus 219 ~~i------g~TpMiG~nD~~~e~ft~~da~-~~~~fA~~~~l~~~s~Ws~~RD 265 (294)
T cd06543 219 AMI------GVTPMIGVNDVGSEVFTLADAQ-TLVDFAKEKGLGRLSMWSLNRD 265 (294)
T ss_pred HHc------cccccccccCCCCceeeHHHHH-HHHHHHHhCCCCeEeeeeccCC
Confidence 222 233322222211 12222233 8999999999999998777653
No 161
>PF01619 Pro_dh: Proline dehydrogenase; InterPro: IPR002872 The proline oxidase/dehydrogenase 1.5.99.8 from EC is responsible for the first step in the conversion of proline to glutamate for use as a carbon and nitrogen source. The enzyme requires FAD as a cofactor, and is induced by proline.; GO: 0004657 proline dehydrogenase activity, 0006537 glutamate biosynthetic process, 0006562 proline catabolic process, 0055114 oxidation-reduction process; PDB: 2G37_A 2EKG_B 4F9I_B 3HAZ_A 2FZM_A 3E2Q_A 3E2S_A 2FZN_A 1K87_A 1TJ2_A ....
Probab=33.21 E-value=2.5e+02 Score=26.54 Aligned_cols=165 Identities=17% Similarity=0.253 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHHCCCC-EEeCCCCcCCCCCCChHHHHHHHHHh---hCCCCCCCCCcEEEEeeccCCCCCCChHHHHHHH
Q 017700 73 SQLQQTFNLAVENGIN-LFDTADSYGTGRLNGKSEKLLGKFIS---EIPGQKQVQNNIVIATKFAAYPWRLTPGQFVNAC 148 (367)
Q Consensus 73 ~~a~~~l~~A~~~Gi~-~~DTA~~Yg~~~~~g~sE~~lG~al~---~~~~~~~~R~~v~i~tK~~~~~~~~~~~~i~~~l 148 (367)
+...++++.|.+.|+. .||.=..+-. +..+--+.+ .+. ..+..++++--..-. + +++.+.+.+
T Consensus 92 ~~l~~i~~~A~~~~v~v~iDaE~~~~~-------~~~~~~~~~~~~~~~---~~~~~vg~tlQaYL~--~-t~~~l~~l~ 158 (313)
T PF01619_consen 92 ERLRRICERAKEHGVFVLIDAEESWYQ-------DAILDLFLELMRKYN---KGWPNVGITLQAYLK--R-TPDDLERLL 158 (313)
T ss_dssp HHHHHHHHHHHHTTEEEEE----GGGH-------HHHHHHHHHHCCHHG---TT--SEEEEEETTBT--T-HHHHHHHHH
T ss_pred HHHHHHHHHhhcCCcEEEEcCCCccch-------HHHHHHHHHHhhHhh---CCCCeEEEEEechhh--c-hHHHHHHHH
Confidence 3567889999999988 4565544443 544444443 221 134456555554322 1 567777777
Q ss_pred HHHHhhhCCCcEEEEEecc---------------CCCC-CC-ChhHHHHHHHHHHHHHcCc-E--eEEeecCCChHHHHH
Q 017700 149 RASLARLQIEQIGIGQLHW---------------STAN-YA-PPQELALWNGLVAMYEKGL-V--RAVGVSNYGPNQLVK 208 (367)
Q Consensus 149 ~~sL~~Lg~d~iDl~~lH~---------------~~~~-~~-~~~~~~~~~~L~~l~~~G~-i--r~iGvS~~~~~~l~~ 208 (367)
+.+-++ |. .+.+=++-. ++.. +. ....+.....+..+..++. - -+++|.+|+...+..
T Consensus 159 ~~a~~~-g~-~~~vRLVkGAY~e~E~~~a~~~g~~~~~~~~~k~~~d~~y~~~~~~l~~~~~~~~~~~~vATHn~~si~~ 236 (313)
T PF01619_consen 159 ELARRR-GF-RLGVRLVKGAYLESERKRAQQHGYPDPPAFTDKATTDANYRRLARLLLEGGDAPKVYPMVATHNERSIAL 236 (313)
T ss_dssp HHHHHT-TS--EEEEEE--SSHHHHHHHHHHTTTSS-SB-SSHHHHHHHHHHHHHHHHCTTTT--EEEEEE---HHHHHH
T ss_pred HHHHHc-CC-eEEEEEecCCCCCchhHHHHHcCCCCCCCCCchhhhHHHHHHHHHHHhcccccceeeeeccCCCHHHHHH
Confidence 666542 21 222222211 1000 11 1123345566665555444 2 689999999999999
Q ss_pred HHHHHHhcCCCc----eeEEeeecccccccchhhHHHHHHHcCCeEEEecCCCC
Q 017700 209 IHDYLTARGVPL----CSAQVQFSLLSMGENQLEIKNICDSLGIRLISYSPLGL 258 (367)
Q Consensus 209 ~~~~~~~~~~~~----~~~q~~~n~~~~~~~~~~l~~~~~~~gi~v~a~~pl~~ 258 (367)
+.+.++..+.++ ...|.-|-+- + .+-....+.|..|..|.|+|.
T Consensus 237 a~~l~~~~~~~~~~~~~efq~L~Gm~-----d-~l~~~L~~~g~~v~~YvP~G~ 284 (313)
T PF01619_consen 237 ALELAEELGIPPNDDRVEFQQLYGMA-----D-DLSRALAQAGYRVRKYVPYGP 284 (313)
T ss_dssp HHHHHHCTT-GG--GGEEEEEETTSS-----H-HHHHHHHHHTSEEEEEEEESE
T ss_pred HHHHHHHcCCCcccccEEeehhccCC-----H-HHHHHHHhCCCCEEEEEecCC
Confidence 999998887665 2334434332 2 677778899999999999984
No 162
>cd03322 rpsA The starvation sensing protein RpsA from E.coli and its homologs are lactonizing enzymes whose putative targets are homoserine lactone (HSL)-derivative. They are part of the mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subfamily share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and catalytic residues, a partially conserved Lys-X-Lys motif and a conserved histidine-aspartate dyad.
Probab=33.03 E-value=1.8e+02 Score=28.03 Aligned_cols=71 Identities=11% Similarity=-0.018 Sum_probs=49.5
Q ss_pred HHHHHHHHHcCcEe-EEeecCCChHHHHHHHHHHHhcCCCceeEEeeecccccccchhhHHHHHHHcCCeEEEecCC
Q 017700 181 WNGLVAMYEKGLVR-AVGVSNYGPNQLVKIHDYLTARGVPLCSAQVQFSLLSMGENQLEIKNICDSLGIRLISYSPL 256 (367)
Q Consensus 181 ~~~L~~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~v~a~~pl 256 (367)
++.+.+|++...+. ..|=|.++...+..+++. ..++++|+...-+---.+-.++.+.|+.+|+.+..++..
T Consensus 203 ~~~~~~L~~~~~~pia~gE~~~~~~~~~~~i~~-----~a~di~~~d~~~~GGit~~~~ia~~A~~~gi~~~~h~~~ 274 (361)
T cd03322 203 QEAFRLIRQHTATPLAVGEVFNSIWDWQNLIQE-----RLIDYIRTTVSHAGGITPARKIADLASLYGVRTGWHGPT 274 (361)
T ss_pred HHHHHHHHhcCCCCEEeccCCcCHHHHHHHHHh-----CCCCEEecCccccCCHHHHHHHHHHHHHcCCeeeccCCC
Confidence 67788888887664 666677777777777664 346777777665421122237899999999999876543
No 163
>PLN02489 homocysteine S-methyltransferase
Probab=33.01 E-value=4.5e+02 Score=25.21 Aligned_cols=172 Identities=13% Similarity=0.078 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHHHCCCCEEeCCCCcCCCC---CCCh----HHHHHHHHHhhCCCC------------------CCCCCcE
Q 017700 72 DSQLQQTFNLAVENGINLFDTADSYGTGR---LNGK----SEKLLGKFISEIPGQ------------------KQVQNNI 126 (367)
Q Consensus 72 ~~~a~~~l~~A~~~Gi~~~DTA~~Yg~~~---~~g~----sE~~lG~al~~~~~~------------------~~~R~~v 126 (367)
++...++=+.++++|-+.+-|...-.+.. ..|. .+++.-++++-..+. ...+.++
T Consensus 54 Pe~V~~vH~~yl~AGAdvI~TnTy~a~~~~l~~~g~~~~~~~~l~~~av~lA~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (335)
T PLN02489 54 PHLIRKVHLDYLEAGADIIITASYQATIQGFESRGLSREESETLLRKSVEIACEARDIFWDKCQKGSTSRPGRELSYRPI 133 (335)
T ss_pred HHHHHHHHHHHHHhCCCEEEecccccCHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccCCCCc
Confidence 35566666677899999998876544310 0121 233433333211000 0013468
Q ss_pred EEEeeccCCCC--------------CCChHHHHHHHHHHHhhhCCCcEEEEEeccCCCCCCChhHHHHHHHHHHHHHcC-
Q 017700 127 VIATKFAAYPW--------------RLTPGQFVNACRASLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKG- 191 (367)
Q Consensus 127 ~i~tK~~~~~~--------------~~~~~~i~~~l~~sL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~~~~L~~l~~~G- 191 (367)
+|+.-+|+... ..+.+.++....+.++.|--..+|++.+--.. . ..|+..+++.+++.+
T Consensus 134 ~VaGsiGP~g~~l~~g~ey~g~y~~~~~~~e~~~~~~~qi~~l~~~gvD~i~~ET~~----~--l~E~~a~~~~~~~~~~ 207 (335)
T PLN02489 134 LVAASIGSYGAYLADGSEYSGDYGPSVTLEKLKDFHRRRLQVLAEAGPDLIAFETIP----N--KLEAQAYVELLEEENI 207 (335)
T ss_pred EEEEEcCCccccccCCcccCCCCccCCCHHHHHHHHHHHHHHHHhCCCCEEEEeccC----C--hHHHHHHHHHHHHcCC
Confidence 88888886421 14668888888888888855679999998441 1 233556666666654
Q ss_pred -cEeEEeecCCC------hHHHHHHHHHHHhcCCCceeEEeeecccccccchhhHHHHHHHc-CCeEEEe
Q 017700 192 -LVRAVGVSNYG------PNQLVKIHDYLTARGVPLCSAQVQFSLLSMGENQLEIKNICDSL-GIRLISY 253 (367)
Q Consensus 192 -~ir~iGvS~~~------~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~~-gi~v~a~ 253 (367)
+--.+.++... ...+.++++.++.. ..++++-+++. .+..-. .+++..+.. .+.+++|
T Consensus 208 ~~p~~iS~t~~~~~~l~~G~~~~~~~~~~~~~-~~~~~iGiNC~--~p~~~~-~~l~~l~~~~~~pl~vy 273 (335)
T PLN02489 208 KIPAWISFNSKDGVNVVSGDSLLECASIADSC-KKVVAVGINCT--PPRFIH-GLILSIRKVTSKPIVVY 273 (335)
T ss_pred CCeEEEEEEeCCCCccCCCCcHHHHHHHHHhc-CCceEEEecCC--CHHHHH-HHHHHHHhhcCCcEEEE
Confidence 55555665422 12355555554432 24666767665 222222 455555554 6677766
No 164
>PLN00191 enolase
Probab=32.80 E-value=5.3e+02 Score=26.00 Aligned_cols=97 Identities=9% Similarity=0.116 Sum_probs=61.2
Q ss_pred ChHHHHHHHHHHHhhhCCCcEEEEEeccCCCCCCChhHHHHHHHHHHHHHcCcEeEEee--cCCChHHHHHHHHHHHhcC
Q 017700 140 TPGQFVNACRASLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKGLVRAVGV--SNYGPNQLVKIHDYLTARG 217 (367)
Q Consensus 140 ~~~~i~~~l~~sL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGv--S~~~~~~l~~~~~~~~~~~ 217 (367)
++++..+-+.+.++.+ ++.+|-.|-. .+ -|+.+.+|.++.++.-+|= ...++..+..+++.
T Consensus 296 s~~e~i~~~~~L~~~y-----~I~~IEDPl~------~~-D~eg~~~Lt~~~~ipIvgDE~~vtn~~~l~~~I~~----- 358 (457)
T PLN00191 296 SGDELIDLYKEFVSDY-----PIVSIEDPFD------QD-DWEHWAKLTSLEDVQIVGDDLLVTNPKRVAKAIQE----- 358 (457)
T ss_pred CHHHHHHHHHHHhhcC-----CcEEEECCCC------cc-cHHHHHHHHccCCCcEEccCcccCCHHHHHHHHHh-----
Confidence 6666666666665544 4556664421 11 2777888888877776661 12456777776664
Q ss_pred CCceeEEeeecccccccchhhHHHHHHHcCCeEEEe
Q 017700 218 VPLCSAQVQFSLLSMGENQLEIKNICDSLGIRLISY 253 (367)
Q Consensus 218 ~~~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~v~a~ 253 (367)
-..+++++..|-+---.+-.++.+.|+.+|+.++..
T Consensus 359 ~aad~i~iKl~qiGGITea~~~a~lA~~~G~~~~is 394 (457)
T PLN00191 359 KACNALLLKVNQIGTVTESIEAVKMSKAAGWGVMTS 394 (457)
T ss_pred CCCCEEEecccccCCHHHHHHHHHHHHHCCCEEEeC
Confidence 346677777765432223347899999999999764
No 165
>PF11242 DUF2774: Protein of unknown function (DUF2774); InterPro: IPR021404 This entry is represented by Bacteriophage T4, Gp24.3; it is a family of uncharacterised viral proteins.
Probab=32.72 E-value=60 Score=22.84 Aligned_cols=22 Identities=41% Similarity=0.545 Sum_probs=19.4
Q ss_pred HHHHHHHHhCCCHHHHHHHHHH
Q 017700 292 SLKEIAERRGKTIPQVAINWCI 313 (367)
Q Consensus 292 ~l~~la~~~g~t~~qlal~~~l 313 (367)
.+.+||+++|.++.+++..|+.
T Consensus 15 ~FveIAr~~~i~a~e~a~~w~~ 36 (63)
T PF11242_consen 15 SFVEIARKIGITAKEVAKAWAE 36 (63)
T ss_pred cHHHHHHHhCCCHHHHHHHHHH
Confidence 4668999999999999999983
No 166
>KOG0173 consensus 20S proteasome, regulatory subunit beta type PSMB7/PSMB10/PUP1 [Posttranslational modification, protein turnover, chaperones]
Probab=32.60 E-value=37 Score=30.90 Aligned_cols=48 Identities=13% Similarity=0.041 Sum_probs=31.3
Q ss_pred CCCCCCCcceeecC-CcccCcceecccccCCCCcCCCCCCCHHHHHHHHHHHHHCCC
Q 017700 32 KLPLFWPWEKVKMG-PLSASPMGFGTWAWGNQFLWGYQESMDSQLQQTFNLAVENGI 87 (367)
Q Consensus 32 ~~~~~~~m~~~~lg-g~~vs~lglGt~~~g~~~~~g~~~~~~~~a~~~l~~A~~~Gi 87 (367)
++.++...++..+| |-..+.-. |-+. |. .++++|++.+++..|+++||
T Consensus 152 phGStd~~Pf~alGSGslaAmsv-----lEsr--~k-~dlt~eea~~Lv~eAi~AGi 200 (271)
T KOG0173|consen 152 PHGSTDKLPFTALGSGSLAAMSV-----LESR--WK-PDLTKEEAIKLVCEAIAAGI 200 (271)
T ss_pred CCCCcCccceeeeccchHHHHHH-----HHHh--cC-cccCHHHHHHHHHHHHHhhh
Confidence 45566667777777 53322111 1122 32 45789999999999999998
No 167
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.
Probab=32.41 E-value=3.6e+02 Score=23.97 Aligned_cols=74 Identities=14% Similarity=0.131 Sum_probs=42.4
Q ss_pred hHHHHHHHHHHHhhh---CCCcEEEEEeccCCCCCCChhHHHHHHHHHHHHHcCcEeEEeecCCChHHHHHHHHHHHhcC
Q 017700 141 PGQFVNACRASLARL---QIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKGLVRAVGVSNYGPNQLVKIHDYLTARG 217 (367)
Q Consensus 141 ~~~i~~~l~~sL~~L---g~d~iDl~~lH~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~ 217 (367)
...+.+.+++.++++ |. .+++++..... + .....+.++.+..+ ++..|=+...+...+...++.+...+
T Consensus 14 ~~~~~~~i~~~~~~~~~~g~-~~~l~i~~~~~---~---~~~~~~~~~~~~~~-~vdgiIi~~~~~~~~~~~l~~~~~~~ 85 (272)
T cd06300 14 RAQMLDEFKAQAKELKKAGL-ISEFIVTSADG---D---VAQQIADIRNLIAQ-GVDAIIINPASPTALNPVIEEACEAG 85 (272)
T ss_pred HHHHHHHHHHHHHhhhccCC-eeEEEEecCCC---C---HHHHHHHHHHHHHc-CCCEEEEeCCChhhhHHHHHHHHHCC
Confidence 456788888888888 62 35666665221 1 12245777777776 56555555544443444444455555
Q ss_pred CCcee
Q 017700 218 VPLCS 222 (367)
Q Consensus 218 ~~~~~ 222 (367)
+|+.+
T Consensus 86 iPvv~ 90 (272)
T cd06300 86 IPVVS 90 (272)
T ss_pred CeEEE
Confidence 66444
No 168
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=32.33 E-value=2.2e+02 Score=25.88 Aligned_cols=69 Identities=10% Similarity=0.065 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHcCcEeEEeecCCChHHHHHHHHHHHhcCCCceeEEeeecccccccchhhHHHHHHHcCC
Q 017700 179 ALWNGLVAMYEKGLVRAVGVSNYGPNQLVKIHDYLTARGVPLCSAQVQFSLLSMGENQLEIKNICDSLGI 248 (367)
Q Consensus 179 ~~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~~gi 248 (367)
++.+.|+.|+++|..-.| +||.....+..+++.....+..++.+-..-......+...-+...+++.|+
T Consensus 105 g~~elL~~L~~~g~~l~I-~T~~~~~~~~~~l~~~~l~~~~~d~i~~~~~~~~~KP~p~~~~~a~~~l~~ 173 (267)
T PRK13478 105 GVLEVIAALRARGIKIGS-TTGYTREMMDVVVPLAAAQGYRPDHVVTTDDVPAGRPYPWMALKNAIELGV 173 (267)
T ss_pred CHHHHHHHHHHCCCEEEE-EcCCcHHHHHHHHHHHhhcCCCceEEEcCCcCCCCCCChHHHHHHHHHcCC
Confidence 367889999999975555 666666666666654332233223332222222222332256666677665
No 169
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=32.25 E-value=2.2e+02 Score=25.65 Aligned_cols=69 Identities=7% Similarity=0.008 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHcCcEeEEeecCCChHHHHHHHHHHHhcCCCceeEEeeecccccccchhhHHHHHHHcCC
Q 017700 179 ALWNGLVAMYEKGLVRAVGVSNYGPNQLVKIHDYLTARGVPLCSAQVQFSLLSMGENQLEIKNICDSLGI 248 (367)
Q Consensus 179 ~~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~~gi 248 (367)
++.+.|+.|+++|.--.| +||.....++.+++...-.+..++.+-..-......+...-+...+++.|+
T Consensus 103 g~~e~L~~L~~~g~~l~I-vT~~~~~~~~~~l~~~gl~~~f~d~ii~~~~~~~~KP~p~~~~~a~~~l~~ 171 (253)
T TIGR01422 103 GVIEVIAYLRARGIKIGS-TTGYTREMMDVVAPEAALQGYRPDYNVTTDDVPAGRPAPWMALKNAIELGV 171 (253)
T ss_pred CHHHHHHHHHHCCCeEEE-ECCCcHHHHHHHHHHHHhcCCCCceEEccccCCCCCCCHHHHHHHHHHcCC
Confidence 367889999999975555 677776767766655332222123332222222222333255666666665
No 170
>PF13167 GTP-bdg_N: GTP-binding GTPase N-terminal
Probab=32.23 E-value=40 Score=26.04 Aligned_cols=67 Identities=24% Similarity=0.204 Sum_probs=49.7
Q ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCC-eeecCCCCHHHHHHHHhccC-------CCCCHHHHHHHHHHHh
Q 017700 286 LKPLLRSLKEIAERRGKTIPQVAINWCICKGT-IPIPGVKSVKQVEENLGALG-------WRLSSDELLELEYAAL 353 (367)
Q Consensus 286 ~~~~~~~l~~la~~~g~t~~qlal~~~l~~~~-~vi~g~~~~e~l~enl~a~~-------~~L~~e~~~~l~~~~~ 353 (367)
+...++++..|++..|..+..- +-..+.++. ...+|.-+.+.+++.++..+ -.||+.+..-|++...
T Consensus 6 ~~~~l~El~~L~~t~g~~vv~~-~~q~~~~~~p~~~iG~GK~eei~~~~~~~~~d~vvfd~~Lsp~Q~rNLe~~~~ 80 (95)
T PF13167_consen 6 FEESLEELEELAETAGYEVVGT-VVQKRRKPDPKTYIGSGKVEEIKELIEELDADLVVFDNELSPSQQRNLEKALG 80 (95)
T ss_pred HHHHHHHHHHHHHHCCCeEEEE-EEecCCCCCcceeechhHHHHHHHHHhhcCCCEEEECCCCCHHHHHHHHHHHC
Confidence 3456689999999988766541 112223344 78999999999999887654 3899999999998875
No 171
>PRK07534 methionine synthase I; Validated
Probab=32.02 E-value=4.7e+02 Score=25.13 Aligned_cols=152 Identities=13% Similarity=0.050 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHHHCCCCEEeCCCCcCCCC---CCC---hHHHHHHHHHhhCCC-CCCCCCcEEEEeeccCCCC------C
Q 017700 72 DSQLQQTFNLAVENGINLFDTADSYGTGR---LNG---KSEKLLGKFISEIPG-QKQVQNNIVIATKFAAYPW------R 138 (367)
Q Consensus 72 ~~~a~~~l~~A~~~Gi~~~DTA~~Yg~~~---~~g---~sE~~lG~al~~~~~-~~~~R~~v~i~tK~~~~~~------~ 138 (367)
++...++=+.++++|-+.+=|.....+.. ..| +.+++.-++++-..+ ......+++|+.-+|+... .
T Consensus 44 Pe~V~~vH~~Yl~AGAdiI~TnTy~as~~~l~~~~~~~~~~~l~~~av~lAr~a~~~~~~~~~VaGsIGP~g~~l~~~~~ 123 (336)
T PRK07534 44 PDNITALHQGFVDAGSDIILTNSFGGTAARLKLHDAQDRVHELNRAAAEIAREVADKAGRKVIVAGSVGPTGEIMEPMGA 123 (336)
T ss_pred HHHHHHHHHHHHHhcCCEEEecCcccCHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhcCCccEEEEecCCCccccCCCCC
Confidence 35566666777899999998765433310 112 123333333321111 0001235889998987532 2
Q ss_pred CChHHHHHHHHHHHhhhCCCcEEEEEeccCCCCCCChhHHHHHHHHHHHHHcCcEeEEeecCCCh------HHHHHHHHH
Q 017700 139 LTPGQFVNACRASLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKGLVRAVGVSNYGP------NQLVKIHDY 212 (367)
Q Consensus 139 ~~~~~i~~~l~~sL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvS~~~~------~~l~~~~~~ 212 (367)
.+.+++.....+.++.|--.-+|++++--. .. ..|+..+++.+++.|+=-.+.++.... ..++++.+.
T Consensus 124 ~~~~e~~~~~~~qi~~l~~~gvD~l~~ET~----p~--l~E~~a~~~~~~~~~~Pv~vSft~~~~g~l~~G~~~~~~~~~ 197 (336)
T PRK07534 124 LTHALAVEAFHEQAEGLKAGGADVLWVETI----SA--PEEIRAAAEAAKLAGMPWCGTMSFDTAGRTMMGLTPADLADL 197 (336)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCCEEEEecc----CC--HHHHHHHHHHHHHcCCeEEEEEEECCCCeeCCCCcHHHHHHH
Confidence 356778888888888885556999999843 22 234556666666667755555544321 335566666
Q ss_pred HHhcCCCceeEEeeecc
Q 017700 213 LTARGVPLCSAQVQFSL 229 (367)
Q Consensus 213 ~~~~~~~~~~~q~~~n~ 229 (367)
+...+..++++-+++..
T Consensus 198 ~~~~~~~~~avGvNC~~ 214 (336)
T PRK07534 198 VEKLGEPPLAFGANCGV 214 (336)
T ss_pred HHhcCCCceEEEecCCC
Confidence 55433455777777663
No 172
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=31.99 E-value=1.9e+02 Score=28.67 Aligned_cols=75 Identities=12% Similarity=0.100 Sum_probs=47.8
Q ss_pred HHHHHHHHHcCcEe-----EEeecCCChHH------HHHHHHHHHhcCCCceeEEeeecccccccchhhHHHHHHHcCCe
Q 017700 181 WNGLVAMYEKGLVR-----AVGVSNYGPNQ------LVKIHDYLTARGVPLCSAQVQFSLLSMGENQLEIKNICDSLGIR 249 (367)
Q Consensus 181 ~~~L~~l~~~G~ir-----~iGvS~~~~~~------l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~ 249 (367)
++.|++|.++|+|. ++|..+..... -.++.+.++..+++-++.-..+-.++|... -+....++.||+
T Consensus 289 lD~LreLe~EG~IG~l~~~fy~t~G~gt~~~~a~~~g~eIa~~Lk~dgVDAvILtstCgtCtrcga--~m~keiE~~GIP 366 (431)
T TIGR01917 289 VDVLRDLEKEGKIGELFKYFYSTTGNGTAVANSKQFAKEFSKELLAAGVDAVILTSTUGTCTRCGA--TMVKEIERAGIP 366 (431)
T ss_pred HHHHHHHHHcCCcccccCeeEEccCCCccHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCcchhHHH--HHHHHHHHcCCC
Confidence 58999999999995 55655544321 244555556556554433334455555443 567788889999
Q ss_pred EEEecCCC
Q 017700 250 LISYSPLG 257 (367)
Q Consensus 250 v~a~~pl~ 257 (367)
++-+..+-
T Consensus 367 vV~i~~~~ 374 (431)
T TIGR01917 367 VVHICTVT 374 (431)
T ss_pred EEEEeech
Confidence 98776653
No 173
>cd01320 ADA Adenosine deaminase (ADA) is a monomeric zinc dependent enzyme which catalyzes the irreversible hydrolytic deamination of both adenosine, as well as desoxyadenosine, to ammonia and inosine or desoxyinosine, respectively. ADA plays an important role in the purine pathway. Low, as well as high levels of ADA activity have been linked to several diseases.
Probab=31.94 E-value=4.3e+02 Score=24.74 Aligned_cols=203 Identities=14% Similarity=0.121 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHCCCCEEeCCCCcCCCCCCChHHHHHHHHHhhCCCCCCCCCcEEEEeeccCCCCCCChHHHHHHHHHH
Q 017700 72 DSQLQQTFNLAVENGINLFDTADSYGTGRLNGKSEKLLGKFISEIPGQKQVQNNIVIATKFAAYPWRLTPGQFVNACRAS 151 (367)
Q Consensus 72 ~~~a~~~l~~A~~~Gi~~~DTA~~Yg~~~~~g~sE~~lG~al~~~~~~~~~R~~v~i~tK~~~~~~~~~~~~i~~~l~~s 151 (367)
...+...+..+++.|++++| .|-.....++-+. +.+.+.+.+-+.
T Consensus 72 ~~~~~~~~~e~~~~Gvt~~E------------------------------~~~~p~~~~~~~~-----~~~~~~~~~~~a 116 (325)
T cd01320 72 ERLAYEYLEDAAADGVVYAE------------------------------IRFSPQLHTRRGL-----SFDEVVEAVLRG 116 (325)
T ss_pred HHHHHHHHHHHHHcCCEEEE------------------------------EEeCchhhccCCC-----CHHHHHHHHHHH
Q ss_pred HhhhCCCc-EEEEEeccCCCCCCChhHHHHHHHHHHHHHcCcEeEEeecC----CChHHHHHHHHHHHhcCCCceeEEee
Q 017700 152 LARLQIEQ-IGIGQLHWSTANYAPPQELALWNGLVAMYEKGLVRAVGVSN----YGPNQLVKIHDYLTARGVPLCSAQVQ 226 (367)
Q Consensus 152 L~~Lg~d~-iDl~~lH~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvS~----~~~~~l~~~~~~~~~~~~~~~~~q~~ 226 (367)
+++...++ +.+.++-.......+....+..+...+....+ |..+|++. ++.+.+..+.+.+++.|.++.+--.+
T Consensus 117 i~~~~~~~gi~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-vvg~~l~~~~~~~~~~~~~~~~~~A~~~g~~v~~H~~E 195 (325)
T cd01320 117 LDEAEAEFGIKARLILCGLRHLSPESAQETLELALKYRDKG-VVGFDLAGDEVGFPPEKFVRAFQRAREAGLRLTAHAGE 195 (325)
T ss_pred HHHHHHhcCCeEEEEEEecCCCCHHHHHHHHHHHHhccCCC-EEEeecCCCCCCCCHHHHHHHHHHHHHCCCceEEeCCC
Q ss_pred ecccccccchhhHHHHHHHcCCeEEEecCCC--CccccCCCCCCCCCCChhhhhhhhhccChHHHHHHHHHHHHHhCCCH
Q 017700 227 FSLLSMGENQLEIKNICDSLGIRLISYSPLG--LGMLTGKYTPSKLPRGPRALLFRQILPGLKPLLRSLKEIAERRGKTI 304 (367)
Q Consensus 227 ~n~~~~~~~~~~l~~~~~~~gi~v~a~~pl~--~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~g~t~ 304 (367)
..-.. .+.+..+..|..-+++.... . +..-++..+.|+..
T Consensus 196 ~~~~~------~~~~a~~~~g~~~i~H~~~l~~~--------------------------------~~~~~~l~~~gi~v 237 (325)
T cd01320 196 AGGPE------SVRDALDLLGAERIGHGIRAIED--------------------------------PELVKRLAERNIPL 237 (325)
T ss_pred CCCHH------HHHHHHHHcCCcccchhhccCcc--------------------------------HHHHHHHHHcCCeE
Q ss_pred ----------------HHHHHHHHHcCCCeeecCCCCH-----HHHHHHHhccCC-CCCHHHHHHH
Q 017700 305 ----------------PQVAINWCICKGTIPIPGVKSV-----KQVEENLGALGW-RLSSDELLEL 348 (367)
Q Consensus 305 ----------------~qlal~~~l~~~~~vi~g~~~~-----e~l~enl~a~~~-~L~~e~~~~l 348 (367)
..--++..+..|..+.+|+.++ .-.++...+... .|+.+++..+
T Consensus 238 ~~~P~sn~~l~~~~~~~~~p~~~l~~~Gv~v~lgTD~~~~~~~~~~~e~~~~~~~~~l~~~el~~~ 303 (325)
T cd01320 238 EVCPTSNVQTGAVKSLAEHPLRELLDAGVKVTINTDDPTVFGTYLTDEYELLAEAFGLTEEELKKL 303 (325)
T ss_pred EECCCccccccccCCcccChHHHHHHCCCEEEECCCCCcccCCCHHHHHHHHHHHcCCCHHHHHHH
No 174
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=31.90 E-value=1.2e+02 Score=28.53 Aligned_cols=64 Identities=16% Similarity=0.146 Sum_probs=49.0
Q ss_pred HHHHHHHHHHhhhCCCcEEEEEeccCCCCCCChhHHHHHHHHHHHHHcCcEeEEeecCCChHHHHHH
Q 017700 143 QFVNACRASLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKGLVRAVGVSNYGPNQLVKI 209 (367)
Q Consensus 143 ~i~~~l~~sL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~ 209 (367)
..++-+.-.+.-++ ..++++|..|....++....++++.|.++.++|. +.|=+|.|..+.++.+
T Consensus 140 G~kqrl~ia~aL~~--~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~-~tvlissH~l~e~~~~ 203 (293)
T COG1131 140 GMKQRLSIALALLH--DPELLILDEPTSGLDPESRREIWELLRELAKEGG-VTILLSTHILEEAEEL 203 (293)
T ss_pred HHHHHHHHHHHHhc--CCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCC-cEEEEeCCcHHHHHHh
Confidence 34555555555554 4599999999877788888889999999999996 4666899988776665
No 175
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=31.80 E-value=1.3e+02 Score=30.18 Aligned_cols=66 Identities=20% Similarity=0.113 Sum_probs=38.8
Q ss_pred HhhhCCCcEEEEEeccCCCCCCChhHHHHHHHHHHHHHcCcEeEEeec-CCChHHHHHHHHHHHhcCCCceeEEeeecc
Q 017700 152 LARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKGLVRAVGVS-NYGPNQLVKIHDYLTARGVPLCSAQVQFSL 229 (367)
Q Consensus 152 L~~Lg~d~iDl~~lH~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvS-~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~ 229 (367)
...+|.|++=+++.... +.+.. .+ ....+.+... ++.+||- |-+++.+.++.+. ..++++|++-+-
T Consensus 273 a~~~GaD~lGfIf~~~S-pR~V~--~~-~a~~i~~~l~---v~~VgVfv~~~~~~i~~i~~~-----~~lD~vQLHG~e 339 (454)
T PRK09427 273 AYDAGAVYGGLIFVEKS-PRYVS--LE-QAQEIIAAAP---LRYVGVFRNADIEDIVDIAKQ-----LSLAAVQLHGDE 339 (454)
T ss_pred HHhCCCCEEeeEeCCCC-CCCCC--HH-HHHHHHHhCC---CCEEEEEeCCCHHHHHHHHHH-----cCCCEEEeCCCC
Confidence 45588999998754422 12222 21 1222222222 8889986 5566666666554 678999998853
No 176
>PRK00730 rnpA ribonuclease P; Reviewed
Probab=31.74 E-value=2.1e+02 Score=23.78 Aligned_cols=62 Identities=15% Similarity=0.213 Sum_probs=40.1
Q ss_pred CCCcEEEEeeccCCCCCCChHHHHHHHHHHHhhhC--CCcEEEEEeccCCCCCCChhHHHHHHHHHHHHH
Q 017700 122 VQNNIVIATKFAAYPWRLTPGQFVNACRASLARLQ--IEQIGIGQLHWSTANYAPPQELALWNGLVAMYE 189 (367)
Q Consensus 122 ~R~~v~i~tK~~~~~~~~~~~~i~~~l~~sL~~Lg--~d~iDl~~lH~~~~~~~~~~~~~~~~~L~~l~~ 189 (367)
.|=-+.|+-|+|.. .....|++.+.++++.+. ....|++++...... ....++.+.|..+.+
T Consensus 46 ~RlG~sVSKKvg~A---V~RNRiKR~lREafR~~~~~l~g~DiVviaR~~~~---~~f~~L~~~l~~~~~ 109 (138)
T PRK00730 46 CKVGITVSKKFGKA---HQRNRFKRIVREAFRHVRHNLPGCQIVVSPKGNSQ---PDFLKLLQDFLQQIP 109 (138)
T ss_pred ceEEEEEecccccc---hhHHHHHHHHHHHHHHhhcccCCceEEEEeccccC---CCHHHHHHHHHHHHH
Confidence 35567888887642 257778888888887663 357899999987432 333445555554444
No 177
>COG4130 Predicted sugar epimerase [Carbohydrate transport and metabolism]
Probab=31.54 E-value=2.2e+02 Score=25.65 Aligned_cols=51 Identities=18% Similarity=0.328 Sum_probs=30.6
Q ss_pred HHHHHHHHHhcCCCceeEEeeecc----cccccchhhHHHHHHHcCCeEEEecCCCC
Q 017700 206 LVKIHDYLTARGVPLCSAQVQFSL----LSMGENQLEIKNICDSLGIRLISYSPLGL 258 (367)
Q Consensus 206 l~~~~~~~~~~~~~~~~~q~~~n~----~~~~~~~~~l~~~~~~~gi~v~a~~pl~~ 258 (367)
++.+...++..| +..+|++-.+ +.....-.++...+.+.|+.|+....|..
T Consensus 19 v~affa~ak~lg--~s~VeiRndl~~~~I~dg~p~a~vka~Aek~Gl~IvSINAlyp 73 (272)
T COG4130 19 VEAFFALAKRLG--LSKVEIRNDLPSNAIADGTPAAEVKALAEKAGLTIVSINALYP 73 (272)
T ss_pred HHHHHHHHHHcC--cceeEEecCCCcccccCCCCHHHHHHHHHHcCcEEEEeecccc
Confidence 344555555544 3444444433 22222234788999999999999887753
No 178
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=31.32 E-value=1.5e+02 Score=25.06 Aligned_cols=73 Identities=19% Similarity=0.186 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHCCCCEEeCCCCcCCCCCCChHHHHHHHHHhhCCCCCCCCCcEEEEeeccCCCCCCChHHHHHHHHHH
Q 017700 72 DSQLQQTFNLAVENGINLFDTADSYGTGRLNGKSEKLLGKFISEIPGQKQVQNNIVIATKFAAYPWRLTPGQFVNACRAS 151 (367)
Q Consensus 72 ~~~a~~~l~~A~~~Gi~~~DTA~~Yg~~~~~g~sE~~lG~al~~~~~~~~~R~~v~i~tK~~~~~~~~~~~~i~~~l~~s 151 (367)
++...-.++.|-+.||.+|=.|..||. .-..+-+.+.. . =++++.|.-.... .-+...+...+++-
T Consensus 13 ~~tle~a~erA~elgik~~vVAS~tG~------tA~k~lemveg------~-lkvVvVthh~Gf~-e~g~~e~~~E~~~~ 78 (186)
T COG1751 13 DETLEIAVERAKELGIKHIVVASSTGY------TALKALEMVEG------D-LKVVVVTHHAGFE-EKGTQEMDEEVRKE 78 (186)
T ss_pred HHHHHHHHHHHHhcCcceEEEEecccH------HHHHHHHhccc------C-ceEEEEEeecccc-cCCceecCHHHHHH
Confidence 455566677888999999999999986 33323233222 1 2356555543221 11455677888888
Q ss_pred HhhhCCC
Q 017700 152 LARLQIE 158 (367)
Q Consensus 152 L~~Lg~d 158 (367)
|+..|.+
T Consensus 79 L~erGa~ 85 (186)
T COG1751 79 LKERGAK 85 (186)
T ss_pred HHHcCce
Confidence 9988864
No 179
>PF11020 DUF2610: Domain of unknown function (DUF2610); InterPro: IPR021277 This family is conserved in Proteobacteria. One member is annotated as being elongation factor P but this could not be confirmed.
Probab=31.13 E-value=1.3e+02 Score=22.32 Aligned_cols=29 Identities=10% Similarity=0.124 Sum_probs=23.2
Q ss_pred ccChHHHHHHHHHHHHHhCCCHHHHHHHH
Q 017700 283 LPGLKPLLRSLKEIAERRGKTIPQVAINW 311 (367)
Q Consensus 283 ~~~~~~~~~~l~~la~~~g~t~~qlal~~ 311 (367)
.+...+.+.+|.+||++.|++..++|.-.
T Consensus 47 P~~V~~sl~kL~~La~~N~v~feeLc~YA 75 (82)
T PF11020_consen 47 PEKVMDSLSKLYKLAKENNVSFEELCVYA 75 (82)
T ss_pred CHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 34455677899999999999999987643
No 180
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=31.07 E-value=4.8e+02 Score=25.01 Aligned_cols=122 Identities=13% Similarity=0.082 Sum_probs=65.2
Q ss_pred CCHHHHHHHHHHHHHCCCCEEeCC---------CCcCCCCCCChHHHHHHHHHhhCCCCCCCCCcEEEEeeccCCCCCCC
Q 017700 70 SMDSQLQQTFNLAVENGINLFDTA---------DSYGTGRLNGKSEKLLGKFISEIPGQKQVQNNIVIATKFAAYPWRLT 140 (367)
Q Consensus 70 ~~~~~a~~~l~~A~~~Gi~~~DTA---------~~Yg~~~~~g~sE~~lG~al~~~~~~~~~R~~v~i~tK~~~~~~~~~ 140 (367)
.+.++..++++...+.|+..++.+ -.||.+. -..++.+..+.... .+.++....- +...+
T Consensus 22 f~~~~~~~i~~~L~~aGv~~IEvg~~~g~g~~s~~~g~~~--~~~~e~i~~~~~~~-----~~~~~~~ll~----pg~~~ 90 (337)
T PRK08195 22 YTLEQVRAIARALDAAGVPVIEVTHGDGLGGSSFNYGFGA--HTDEEYIEAAAEVV-----KQAKIAALLL----PGIGT 90 (337)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEeecCCCCCCccccCCCCC--CCHHHHHHHHHHhC-----CCCEEEEEec----cCccc
Confidence 567899999999999999999994 2234311 11355665554442 2222221111 11123
Q ss_pred hHHHHHHHHHHHhhhCCCcEEEEEeccCCCCCCChhHHHHHHHHHHHHHcCcEeEEeecC---CChHHHHHHHHHHHh
Q 017700 141 PGQFVNACRASLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKGLVRAVGVSN---YGPNQLVKIHDYLTA 215 (367)
Q Consensus 141 ~~~i~~~l~~sL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvS~---~~~~~l~~~~~~~~~ 215 (367)
.++++++. ..|+|.+-+. .|..+ .+.+.+.++..|+.|+--.+.+.. ++++.+.+..+.+..
T Consensus 91 ~~dl~~a~-----~~gvd~iri~-~~~~e-------~~~~~~~i~~ak~~G~~v~~~l~~a~~~~~e~l~~~a~~~~~ 155 (337)
T PRK08195 91 VDDLKMAY-----DAGVRVVRVA-THCTE-------ADVSEQHIGLARELGMDTVGFLMMSHMAPPEKLAEQAKLMES 155 (337)
T ss_pred HHHHHHHH-----HcCCCEEEEE-Eecch-------HHHHHHHHHHHHHCCCeEEEEEEeccCCCHHHHHHHHHHHHh
Confidence 44444443 2366666654 35321 123667788888888754444432 344555444444443
No 181
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=30.98 E-value=4.2e+02 Score=24.27 Aligned_cols=28 Identities=7% Similarity=0.017 Sum_probs=23.4
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEeCCCCc
Q 017700 69 ESMDSQLQQTFNLAVENGINLFDTADSY 96 (367)
Q Consensus 69 ~~~~~~a~~~l~~A~~~Gi~~~DTA~~Y 96 (367)
..+.++..++++.-.+.|+..++.....
T Consensus 16 ~~~~~~k~~i~~~L~~~Gv~~iEvg~~~ 43 (268)
T cd07940 16 SLTPEEKLEIARQLDELGVDVIEAGFPA 43 (268)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 3567899999999999999999987443
No 182
>PRK14459 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=30.71 E-value=5.2e+02 Score=25.28 Aligned_cols=99 Identities=11% Similarity=0.009 Sum_probs=65.5
Q ss_pred EEEEeccCCCC----CCC----hhHHHHHHHHHHHH-HcCc---EeEEeecC--CChHHHHHHHHHHHhcC-CCceeEEe
Q 017700 161 GIGQLHWSTAN----YAP----PQELALWNGLVAMY-EKGL---VRAVGVSN--YGPNQLVKIHDYLTARG-VPLCSAQV 225 (367)
Q Consensus 161 Dl~~lH~~~~~----~~~----~~~~~~~~~L~~l~-~~G~---ir~iGvS~--~~~~~l~~~~~~~~~~~-~~~~~~q~ 225 (367)
=.+-||.+++. ..| ...+++++++.++. +.|+ |+|+=+.+ .+.++++++.+.++... ....++-+
T Consensus 240 LavSLha~d~e~R~~l~p~n~~~~l~~ll~a~~~~~~~~grrv~ieyvLi~GvNDs~e~a~~L~~llk~~~~~~~~VNLI 319 (373)
T PRK14459 240 LAVSLHAPDDELRDELVPVNTRWKVDEVLDAARYYADATGRRVSIEYALIRDINDQPWRADLLGKKLHGRGGGWVHVNLI 319 (373)
T ss_pred EEEEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHHhCCEEEEEEEEeCCCCCCHHHHHHHHHHHhhccCCCeEEEEE
Confidence 35779988642 112 23466888877766 4465 56776664 45667777888776532 15678999
Q ss_pred eecccccc----cch---hhHHHHHHHcCCeEEEecCCCCc
Q 017700 226 QFSLLSMG----ENQ---LEIKNICDSLGIRLISYSPLGLG 259 (367)
Q Consensus 226 ~~n~~~~~----~~~---~~l~~~~~~~gi~v~a~~pl~~G 259 (367)
+||+.... +.. ..+.+..+++||.+......|.-
T Consensus 320 pyNp~~~~~y~~~~~~~~~~F~~~L~~~gi~~tiR~~~G~d 360 (373)
T PRK14459 320 PLNPTPGSKWTASPPEVEREFVRRLRAAGVPCTVRDTRGQE 360 (373)
T ss_pred ccCCCCCCCCcCCCHHHHHHHHHHHHHCCCeEEeeCCCCcC
Confidence 99996432 111 35778888999999988777654
No 183
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=30.65 E-value=3.9e+02 Score=23.80 Aligned_cols=74 Identities=15% Similarity=0.342 Sum_probs=49.0
Q ss_pred CCHHHHHHHHHHHHHCCCCEEeCCCCcCCCCCCChHH---HHHHHHHhhCCCCCCCCCcEEEEeeccCCCCCCChHHHHH
Q 017700 70 SMDSQLQQTFNLAVENGINLFDTADSYGTGRLNGKSE---KLLGKFISEIPGQKQVQNNIVIATKFAAYPWRLTPGQFVN 146 (367)
Q Consensus 70 ~~~~~a~~~l~~A~~~Gi~~~DTA~~Yg~~~~~g~sE---~~lG~al~~~~~~~~~R~~v~i~tK~~~~~~~~~~~~i~~ 146 (367)
.++++.....+.+.+.|..|+=|+.-|+. +|-.. +.+.+.++ ++ +-.|...-.. +.++..+
T Consensus 129 L~~~ei~~a~~ia~eaGADfvKTsTGf~~---~gat~~dv~~m~~~v~---------~~--v~IKaaGGir--t~~~a~~ 192 (211)
T TIGR00126 129 LTDEEIRKACEICIDAGADFVKTSTGFGA---GGATVEDVRLMRNTVG---------DT--IGVKASGGVR--TAEDAIA 192 (211)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEeCCCCCC---CCCCHHHHHHHHHHhc---------cC--CeEEEeCCCC--CHHHHHH
Confidence 45678889999999999999999988874 13222 23333332 22 2333322111 6788888
Q ss_pred HHHHHHhhhCCCc
Q 017700 147 ACRASLARLQIEQ 159 (367)
Q Consensus 147 ~l~~sL~~Lg~d~ 159 (367)
-++---.|+|+++
T Consensus 193 ~i~aGa~riGts~ 205 (211)
T TIGR00126 193 MIEAGASRIGASA 205 (211)
T ss_pred HHHHhhHHhCcch
Confidence 8888889999864
No 184
>cd01948 EAL EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.
Probab=30.47 E-value=3.7e+02 Score=23.42 Aligned_cols=117 Identities=14% Similarity=0.207 Sum_probs=70.0
Q ss_pred CcEEEEeeccCCCCCCChHHHHHHHHHHHhhhCCCc--EEEEEeccCCCCCCChhHHHHHHHHHHHHHcCcEeEEeecCC
Q 017700 124 NNIVIATKFAAYPWRLTPGQFVNACRASLARLQIEQ--IGIGQLHWSTANYAPPQELALWNGLVAMYEKGLVRAVGVSNY 201 (367)
Q Consensus 124 ~~v~i~tK~~~~~~~~~~~~i~~~l~~sL~~Lg~d~--iDl~~lH~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvS~~ 201 (367)
....+.-.+.+. .+..+.....+...++..+... +-+-+-.. . .......+.+.+..|++.|. .+++.++
T Consensus 82 ~~~~l~ini~~~--~l~~~~~~~~~~~~l~~~~~~~~~l~iei~e~---~-~~~~~~~~~~~~~~l~~~G~--~l~ld~~ 153 (240)
T cd01948 82 PDLRLSVNLSAR--QLRDPDFLDRLLELLAETGLPPRRLVLEITES---A-LIDDLEEALATLRRLRALGV--RIALDDF 153 (240)
T ss_pred CCeEEEEECCHH--HhCCcHHHHHHHHHHHHcCCCHHHEEEEEecc---h-hhCCHHHHHHHHHHHHHCCC--eEEEeCC
Confidence 344455555321 1123445677778888887763 33322221 1 11122347899999999999 7888887
Q ss_pred ChHH--HHHHHHHHHhcCCCceeEEeeecccccccc-------hhhHHHHHHHcCCeEEEec
Q 017700 202 GPNQ--LVKIHDYLTARGVPLCSAQVQFSLLSMGEN-------QLEIKNICDSLGIRLISYS 254 (367)
Q Consensus 202 ~~~~--l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~-------~~~l~~~~~~~gi~v~a~~ 254 (367)
+... +..+.. ++|+++-+..+.+..-.. -..++..|+..|+.|++-.
T Consensus 154 g~~~~~~~~l~~------~~~d~iKld~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~via~g 209 (240)
T cd01948 154 GTGYSSLSYLKR------LPVDYLKIDRSFVRDIETDPEDRAIVRAIIALAHSLGLKVVAEG 209 (240)
T ss_pred CCcHhhHHHHHh------CCCCEEEECHHHHHhHhcChhhHHHHHHHHHHHHHCCCeEEEEe
Confidence 6543 333333 567887777666543221 1367889999999998843
No 185
>cd00466 DHQase_II Dehydroquinase (DHQase), type II. Dehydroquinase (or 3-dehydroquinate dehydratase) catalyzes the reversible dehydration of 3-dehydroquinate to form 3-dehydroshikimate. This reaction is part of two metabolic pathways: the biosynthetic shikimate pathway and the catabolic quinate pathway. There are two types of DHQases, which are distinct from each other in amino acid sequence and three-dimensional structure. Type I enzymes usually catalyze the biosynthetic reaction using a syn elimination mechanism. In contrast, type II enzymes, found in the quinate pathway of fungi and in the shikimate pathway of many bacteria, are dodecameric enzymes that employ an anti elimination reaction mechanism.
Probab=30.42 E-value=2.4e+02 Score=23.43 Aligned_cols=78 Identities=17% Similarity=0.114 Sum_probs=55.3
Q ss_pred CChHHHHHHHHHHHhhhCCCcEEEEEeccCCCCCCChhHHHHHHHHHHHHH--cCcEeEEeecCCChHHHHHHHHHHHhc
Q 017700 139 LTPGQFVNACRASLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYE--KGLVRAVGVSNYGPNQLVKIHDYLTAR 216 (367)
Q Consensus 139 ~~~~~i~~~l~~sL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~~~~L~~l~~--~G~ir~iGvS~~~~~~l~~~~~~~~~~ 216 (367)
.+-+++.+.+.+.-+.+|. .++++|=. .+.++++.+.+..+ +|.|-.=|--+|+.-.+..++..
T Consensus 24 ~tl~~i~~~l~~~a~~~g~-~v~~~QSN---------~Egelid~I~~a~~~~dgiIINpga~THtSvAi~DAl~~---- 89 (140)
T cd00466 24 TTLADIEALLRELAAELGV-EVEFFQSN---------HEGELIDWIHEARDGADGIIINPGAYTHTSIALRDALAA---- 89 (140)
T ss_pred CCHHHHHHHHHHHHHHcCC-EEEEEeeC---------cHHHHHHHHHHhhccCcEEEEcchHHHHHHHHHHHHHHc----
Confidence 3789999999999999997 46665533 24568888888765 46666666666666666666665
Q ss_pred CCCceeEEeeecccc
Q 017700 217 GVPLCSAQVQFSLLS 231 (367)
Q Consensus 217 ~~~~~~~q~~~n~~~ 231 (367)
+...+++++.|-.+
T Consensus 90 -~~~P~VEVHiSNi~ 103 (140)
T cd00466 90 -VSIPVIEVHISNIH 103 (140)
T ss_pred -CCCCEEEEecCCcc
Confidence 56677888888764
No 186
>PRK15072 bifunctional D-altronate/D-mannonate dehydratase; Provisional
Probab=30.25 E-value=2.4e+02 Score=27.80 Aligned_cols=71 Identities=10% Similarity=-0.035 Sum_probs=49.2
Q ss_pred HHHHHHHHHcCcEe-EEeecCCChHHHHHHHHHHHhcCCCceeEEeeecccccccchhhHHHHHHHcCCeEEEecCC
Q 017700 181 WNGLVAMYEKGLVR-AVGVSNYGPNQLVKIHDYLTARGVPLCSAQVQFSLLSMGENQLEIKNICDSLGIRLISYSPL 256 (367)
Q Consensus 181 ~~~L~~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~v~a~~pl 256 (367)
++.+.+|++.-.|. ..|=|.++...++.+++. --++++|+...-.---..-.++.+.|+.+|+.++.++..
T Consensus 246 ~~~~~~L~~~~~iPIa~dEs~~~~~~~~~li~~-----~a~dii~~d~~~~GGit~~~kia~lA~~~gi~~~~h~~~ 317 (404)
T PRK15072 246 QEAFRLIRQHTTTPLAVGEVFNSIWDCKQLIEE-----QLIDYIRTTVTHAGGITHLRRIADFAALYQVRTGSHGPT 317 (404)
T ss_pred HHHHHHHHhcCCCCEEeCcCccCHHHHHHHHHc-----CCCCEEecCccccCcHHHHHHHHHHHHHcCCceeeccCc
Confidence 57788888876654 666677778887777664 346778776655421122247899999999999887554
No 187
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=30.13 E-value=4.4e+02 Score=24.24 Aligned_cols=126 Identities=7% Similarity=-0.001 Sum_probs=70.2
Q ss_pred CCHHHHHHHHHHHHHCCCCEEeCCC-CcCCCCCCChHHHHHHHHHhhCCCCCCCCCcEEEEeeccCCCCCCChHHHHHHH
Q 017700 70 SMDSQLQQTFNLAVENGINLFDTAD-SYGTGRLNGKSEKLLGKFISEIPGQKQVQNNIVIATKFAAYPWRLTPGQFVNAC 148 (367)
Q Consensus 70 ~~~~~a~~~l~~A~~~Gi~~~DTA~-~Yg~~~~~g~sE~~lG~al~~~~~~~~~R~~v~i~tK~~~~~~~~~~~~i~~~l 148 (367)
.+.++..++++.-.+.|+..++... .+.. .+.-.-+.+.... ....++... ....+++++++
T Consensus 19 ~s~~~k~~i~~~L~~~Gv~~IEvG~P~~~~------~~~~~~~~l~~~~----~~~~v~~~~-------r~~~~di~~a~ 81 (262)
T cd07948 19 FDTEDKIEIAKALDAFGVDYIELTSPAASP------QSRADCEAIAKLG----LKAKILTHI-------RCHMDDARIAV 81 (262)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEECCCCCH------HHHHHHHHHHhCC----CCCcEEEEe-------cCCHHHHHHHH
Confidence 5678999999999999999999863 3332 2332334444321 122332111 12566666665
Q ss_pred HHHHhhhCCCcEEEEEeccC----C-CCCCC-hhHHHHHHHHHHHHHcCcEeEEeecC---CChHHHHHHHHHHHhcC
Q 017700 149 RASLARLQIEQIGIGQLHWS----T-ANYAP-PQELALWNGLVAMYEKGLVRAVGVSN---YGPNQLVKIHDYLTARG 217 (367)
Q Consensus 149 ~~sL~~Lg~d~iDl~~lH~~----~-~~~~~-~~~~~~~~~L~~l~~~G~ir~iGvS~---~~~~~l~~~~~~~~~~~ 217 (367)
+ .|.+.|.+++=-++ . ...+. ...+.+.+.++.+++.|.--.+++.. .+.+.+.++.+.+...+
T Consensus 82 ~-----~g~~~i~i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~eda~r~~~~~l~~~~~~~~~~g 154 (262)
T cd07948 82 E-----TGVDGVDLVFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFSSEDSFRSDLVDLLRVYRAVDKLG 154 (262)
T ss_pred H-----cCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeeCCCCHHHHHHHHHHHHHcC
Confidence 4 48888887662111 0 01111 11234566678888999866666532 34555666666555444
No 188
>PRK09061 D-glutamate deacylase; Validated
Probab=30.07 E-value=4.4e+02 Score=26.82 Aligned_cols=117 Identities=12% Similarity=0.094 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHCCCCEEeCCCCcCCCCCCChHHHHHHHHHhhCCCCCCCCCcEEEEeeccCCCCCCChHHHHHHHHHHHh
Q 017700 74 QLQQTFNLAVENGINLFDTADSYGTGRLNGKSEKLLGKFISEIPGQKQVQNNIVIATKFAAYPWRLTPGQFVNACRASLA 153 (367)
Q Consensus 74 ~a~~~l~~A~~~Gi~~~DTA~~Yg~~~~~g~sE~~lG~al~~~~~~~~~R~~v~i~tK~~~~~~~~~~~~i~~~l~~sL~ 153 (367)
+..++++.|++.|+..|=+...|-. +.....+-+.++.. .+.+..|....-.... .+......++++.++
T Consensus 170 ~m~~ll~~al~~Ga~gis~~~~y~p----~~~~~eL~~l~~~A-----~~~g~~v~~H~e~~~~-~~~~~e~~av~~~i~ 239 (509)
T PRK09061 170 EILELLEQGLDEGALGIGIGAGYAP----GTGHKEYLELARLA-----ARAGVPTYTHVRYLSN-VDPRSSVDAYQELIA 239 (509)
T ss_pred HHHHHHHHHHHCCCCEEecCCccCC----CCCHHHHHHHHHHH-----HHcCCEEEEEecCccc-CCchhHHHHHHHHHH
Confidence 3677888999999999987666643 33455555555542 3335666666532210 112222334444444
Q ss_pred hhCCCcEEEEEeccCCCCCCChhHHHHHHHHHHHHHcCcEeEEeecCCC
Q 017700 154 RLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKGLVRAVGVSNYG 202 (367)
Q Consensus 154 ~Lg~d~iDl~~lH~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvS~~~ 202 (367)
..+.--.-+.+.|-.... .....+.++.+++++++|.--..-++.|.
T Consensus 240 lA~~~G~rv~IsHlss~g--~~~~~~~le~I~~Ar~~Gi~Vt~e~~P~~ 286 (509)
T PRK09061 240 AAAETGAHMHICHVNSTS--LRDIDRCLALVEKAQAQGLDVTTEAYPYG 286 (509)
T ss_pred HHHHhCCCEEEEeeccCC--cccHHHHHHHHHHHHHcCCcEEEEecCcc
Confidence 332222235666743211 11245578899999999954334444443
No 189
>PRK14456 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=29.91 E-value=4.7e+02 Score=25.51 Aligned_cols=95 Identities=11% Similarity=0.078 Sum_probs=62.7
Q ss_pred EEeccCCCC----C----C-ChhHHHHHHHHHH-HHHcC---cEeEEeecC--CChHHHHHHHHHHHhcCCCceeEEeee
Q 017700 163 GQLHWSTAN----Y----A-PPQELALWNGLVA-MYEKG---LVRAVGVSN--YGPNQLVKIHDYLTARGVPLCSAQVQF 227 (367)
Q Consensus 163 ~~lH~~~~~----~----~-~~~~~~~~~~L~~-l~~~G---~ir~iGvS~--~~~~~l~~~~~~~~~~~~~~~~~q~~~ 227 (367)
+.||.+++. . . ....+++++++.+ +++.| +|+++=+.+ .+.+++..+.++++. .+..++-++|
T Consensus 238 iSL~a~~~e~r~~i~P~~~~~~~l~~l~~~i~~~~~~~g~~V~ieyvLI~GvNDs~eda~~L~~~l~~--~~~~VnlIpy 315 (368)
T PRK14456 238 VSLHSADQEKRERLMPQAARDYPLDELREALIGYASKTGEPVTLVYMLLEGINDSPEDARKLIRFASR--FFCKINLIDY 315 (368)
T ss_pred EEecCCCHHHHHHhccccCCCCCHHHHHHHHHHHHHhcCCeEEEEEEEEcCCCCCHHHHHHHHHHHhc--CCCeeEEeee
Confidence 688977532 0 1 2234567888874 55566 355665554 455678888888764 3567788999
Q ss_pred cccccccc-------hhhHHHHHHHcCCeEEEecCCCCc
Q 017700 228 SLLSMGEN-------QLEIKNICDSLGIRLISYSPLGLG 259 (367)
Q Consensus 228 n~~~~~~~-------~~~l~~~~~~~gi~v~a~~pl~~G 259 (367)
|++..... -..+.+..+++|+.+......|.-
T Consensus 316 n~~~~~~~~~ps~e~i~~F~~~L~~~Gi~vtvR~~~G~d 354 (368)
T PRK14456 316 NSIVNIKFEPVCSSTRERFRDRLLDAGLQVTVRKSYGTT 354 (368)
T ss_pred ccCCCCCCCCCCHHHHHHHHHHHHHCCCcEEeeCCCCcc
Confidence 98764332 135677888999999988777653
No 190
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=29.87 E-value=4.3e+02 Score=24.09 Aligned_cols=14 Identities=0% Similarity=-0.005 Sum_probs=11.2
Q ss_pred HHHhhhCCCcEEEE
Q 017700 150 ASLARLQIEQIGIG 163 (367)
Q Consensus 150 ~sL~~Lg~d~iDl~ 163 (367)
+...++|.++|++.
T Consensus 23 ~~~~~~G~~~VEl~ 36 (279)
T TIGR00542 23 QLAKTCGFDFVEMS 36 (279)
T ss_pred HHHHHcCCCEEEEe
Confidence 44578999999984
No 191
>PF00148 Oxidored_nitro: Nitrogenase component 1 type Oxidoreductase; InterPro: IPR000510 Enzymes belonging to this family include cofactor-requiring nitrogenases and protochlorophyllide reductase. The key enzymatic reactions in nitrogen fixation are catalysed by the nitrogenase complex, which has two components, the iron protein (component 2), and a component (component 1) which is either a molybdenum-iron, vanadium-iron or iron-iron protein. The enzyme (1.18.6.1 from EC) forms a hexamer of two alpha, two beta and two delta chains. Protochlorophyllide reductase (1.3.1.33 from EC) is involved in the light-dependent accumulation of chlorophyll, probably at the step of reduction of protochlorophyllide to chlorophyllide.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QH1_C 1QH8_A 1H1L_C 1QGU_A 3AEK_C 3AET_C 3AER_C 3AEU_A 3AES_C 3AEQ_C ....
Probab=29.74 E-value=2.5e+02 Score=27.27 Aligned_cols=145 Identities=19% Similarity=0.191 Sum_probs=72.0
Q ss_pred HHHHHHHHhhCCCCCCCCCcEEEEeeccCCCCCCChHHHHHHHHHHHhhhCCCcEEEEEeccCCCCCC-ChhHHHHHHHH
Q 017700 106 EKLLGKFISEIPGQKQVQNNIVIATKFAAYPWRLTPGQFVNACRASLARLQIEQIGIGQLHWSTANYA-PPQELALWNGL 184 (367)
Q Consensus 106 E~~lG~al~~~~~~~~~R~~v~i~tK~~~~~~~~~~~~i~~~l~~sL~~Lg~d~iDl~~lH~~~~~~~-~~~~~~~~~~L 184 (367)
|+-|-++++...+ ....+=++|.|-+.+. +--+++..-+++.-++.+. .++.+|.+.-... ....+.++.+|
T Consensus 59 ~~kL~~~i~~~~~-~~~P~~i~v~~sC~~~---iIGdD~~~v~~~~~~~~~~---~vi~v~~~gf~~~~~~G~~~a~~~l 131 (398)
T PF00148_consen 59 EEKLREAIKEIAE-KYKPKAIFVVTSCVPE---IIGDDIEAVARELQEEYGI---PVIPVHTPGFSGSYSQGYDAALRAL 131 (398)
T ss_dssp HHHHHHHHHHHHH-HHSTSEEEEEE-HHHH---HTTTTHHHHHHHHHHHHSS---EEEEEE--TTSSSHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHh-cCCCcEEEEECCCCHH---HhCCCHHHHHHHhhcccCC---cEEEEECCCccCCccchHHHHHHHH
Confidence 5555565554311 0123556777776432 1223344444444445554 8888887643111 11233455555
Q ss_pred HHHH-H------cCcEeEEeecCCChHHHHHHHHHHHhcCCCceeEE--------------eeecccccccchhhHHHHH
Q 017700 185 VAMY-E------KGLVRAVGVSNYGPNQLVKIHDYLTARGVPLCSAQ--------------VQFSLLSMGENQLEIKNIC 243 (367)
Q Consensus 185 ~~l~-~------~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q--------------~~~n~~~~~~~~~~l~~~~ 243 (367)
-+.. + ++.|.-||.++.....+.++.+..+..|+.+...- -.+|+.-.......+.++.
T Consensus 132 ~~~~~~~~~~~~~~~VNiiG~~~~~~~d~~el~~lL~~~Gi~v~~~~~~~~t~~e~~~~~~A~lniv~~~~~~~~~a~~L 211 (398)
T PF00148_consen 132 AEQLVKPPEEKKPRSVNIIGGSPLGPGDLEELKRLLEELGIEVNAVFPGGTTLEEIRKAPEAALNIVLCPEGGPYAAEWL 211 (398)
T ss_dssp HHHHTTGTTTTSSSEEEEEEESTBTHHHHHHHHHHHHHTTEEEEEEEETTBCHHHHHHGGGSSEEEESSCCHHHHHHHHH
T ss_pred HhhcccccccCCCCceEEecCcCCCcccHHHHHHHHHHCCCceEEEeCCCCCHHHHHhCCcCcEEEEeccchhhHHHHHH
Confidence 4333 2 36888999998876777788887777665332221 1133332222221255555
Q ss_pred HHc-CCeEEE-ecCCC
Q 017700 244 DSL-GIRLIS-YSPLG 257 (367)
Q Consensus 244 ~~~-gi~v~a-~~pl~ 257 (367)
+++ |++.+. -.|++
T Consensus 212 ~e~~giP~~~~~~p~G 227 (398)
T PF00148_consen 212 EERFGIPYLYFPSPYG 227 (398)
T ss_dssp HHHHT-EEEEEC-SBS
T ss_pred HHHhCCCeeecccccc
Confidence 554 999888 44443
No 192
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=29.73 E-value=4.6e+02 Score=24.30 Aligned_cols=111 Identities=9% Similarity=0.012 Sum_probs=61.9
Q ss_pred CCCChHHHHHHHHHHHhhhCCCcEEEEEeccCCCCCCChhHHHHHHHHHHHHH--cCc-EeEEeecCCChHHHHHHHHHH
Q 017700 137 WRLTPGQFVNACRASLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYE--KGL-VRAVGVSNYGPNQLVKIHDYL 213 (367)
Q Consensus 137 ~~~~~~~i~~~l~~sL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~~~~L~~l~~--~G~-ir~iGvS~~~~~~l~~~~~~~ 213 (367)
..++.+.+++-++..++ -| +|-+++-....+...+..+|-.+.++..++ .|+ --..|++..+..+..+..+.+
T Consensus 17 g~iD~~~l~~~i~~l~~-~G---v~gi~~~Gs~GE~~~ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~~~~~~i~~a~~a 92 (292)
T PRK03170 17 GSVDFAALRKLVDYLIA-NG---TDGLVVVGTTGESPTLTHEEHEELIRAVVEAVNGRVPVIAGTGSNSTAEAIELTKFA 92 (292)
T ss_pred CCcCHHHHHHHHHHHHH-cC---CCEEEECCcCCccccCCHHHHHHHHHHHHHHhCCCCcEEeecCCchHHHHHHHHHHH
Confidence 34577778877777776 44 444555433222223333333344443433 343 345888877777777777777
Q ss_pred HhcCCCceeEEeeecccccccchhhHHHH----HHHcCCeEEEec
Q 017700 214 TARGVPLCSAQVQFSLLSMGENQLEIKNI----CDSLGIRLISYS 254 (367)
Q Consensus 214 ~~~~~~~~~~q~~~n~~~~~~~~~~l~~~----~~~~gi~v~a~~ 254 (367)
+..|.+-.++..++... ..+++++++ |..-+++++.|.
T Consensus 93 ~~~G~d~v~~~pP~~~~---~~~~~i~~~~~~ia~~~~~pv~lYn 134 (292)
T PRK03170 93 EKAGADGALVVTPYYNK---PTQEGLYQHFKAIAEATDLPIILYN 134 (292)
T ss_pred HHcCCCEEEECCCcCCC---CCHHHHHHHHHHHHhcCCCCEEEEE
Confidence 87777655554554321 112255444 444578888884
No 193
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=29.67 E-value=3.4e+02 Score=23.90 Aligned_cols=74 Identities=20% Similarity=0.275 Sum_probs=51.2
Q ss_pred hHHHHHHHHHHHhhhCCCcEEEEEeccCCCCCCChhHHHHHHHHHHHHHcCcEeEEeecCCChHHHHHHHHHHHhcCCCc
Q 017700 141 PGQFVNACRASLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKGLVRAVGVSNYGPNQLVKIHDYLTARGVPL 220 (367)
Q Consensus 141 ~~~i~~~l~~sL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~ 220 (367)
...+.+.+++.++.+|.+ ++++ .. ...+ .....+.++.+.++| +..|=++..+...+...++.++..|+|+
T Consensus 13 ~~~~~~g~~~~a~~~g~~-~~~~-~~---~~~d---~~~q~~~i~~~i~~~-~d~Iiv~~~~~~~~~~~l~~~~~~gIpv 83 (257)
T PF13407_consen 13 WQQVIKGAKAAAKELGYE-VEIV-FD---AQND---PEEQIEQIEQAISQG-VDGIIVSPVDPDSLAPFLEKAKAAGIPV 83 (257)
T ss_dssp HHHHHHHHHHHHHHHTCE-EEEE-EE---STTT---HHHHHHHHHHHHHTT-ESEEEEESSSTTTTHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHHHHcCCE-EEEe-CC---CCCC---HHHHHHHHHHHHHhc-CCEEEecCCCHHHHHHHHHHHhhcCceE
Confidence 456888999999999863 3333 11 1112 234578899999888 8888888887776667777777777765
Q ss_pred eeE
Q 017700 221 CSA 223 (367)
Q Consensus 221 ~~~ 223 (367)
..+
T Consensus 84 v~~ 86 (257)
T PF13407_consen 84 VTV 86 (257)
T ss_dssp EEE
T ss_pred EEE
Confidence 543
No 194
>PRK06361 hypothetical protein; Provisional
Probab=29.65 E-value=3.8e+02 Score=23.37 Aligned_cols=187 Identities=14% Similarity=0.028 Sum_probs=95.4
Q ss_pred HHHHHHHHHHHCCCCEEeCCCCcCCCCCCChHHHHH---HHHHhhCCCCCCCCCcEEEEeeccCCCCCCChHHHHHHHHH
Q 017700 74 QLQQTFNLAVENGINLFDTADSYGTGRLNGKSEKLL---GKFISEIPGQKQVQNNIVIATKFAAYPWRLTPGQFVNACRA 150 (367)
Q Consensus 74 ~a~~~l~~A~~~Gi~~~DTA~~Yg~~~~~g~sE~~l---G~al~~~~~~~~~R~~v~i~tK~~~~~~~~~~~~i~~~l~~ 150 (367)
...++++.|.+.|+..+=.+++... ..-...+ -+..+.+.+ ...=+|+...-+... ..+.+ ..+.+
T Consensus 11 ~~~e~v~~A~~~Gl~~i~iTDH~~~----~~~~~~~~~~~~~~~~~~~--~~~i~v~~GiE~~~~----~~~~~-~~~~~ 79 (212)
T PRK06361 11 IPSELVRRARVLGYRAIAITDHADA----SNLEEILEKLVRAAEELEL--YWDIEVIPGVELTHV----PPKLI-PKLAK 79 (212)
T ss_pred CHHHHHHHHHHcCCCEEEEecCCCC----ccHHHHHHHHHHHHHHHhh--cCCCEEEEEEEEccc----Cchhh-chHHH
Confidence 4778999999999999977777542 1011111 111222110 011123333333211 22233 33335
Q ss_pred HHhhhCCCcEEEEEeccCCCCCCChhHHHHHHHHHHHHHcCcEeEEeecCCChHHHHHHHHHHHhcCCCceeEEeeeccc
Q 017700 151 SLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKGLVRAVGVSNYGPNQLVKIHDYLTARGVPLCSAQVQFSLL 230 (367)
Q Consensus 151 sL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~ 230 (367)
.+.+++ .|++.+|.... ..+.. ...-.++.+.|.+.-+|=-. .....+.+.+...+..+.++ ....
T Consensus 80 ~~~~~~---~~~~svH~~~~-~~~~~----~~~~~~a~~~~~~dvlaHpd---~~~~~~~~~~~~~~~~lEin---~~~~ 145 (212)
T PRK06361 80 KARDLG---AEIVVVHGETI-VEPVE----EGTNLAAIECEDVDILAHPG---LITEEEAELAAENGVFLEIT---ARKG 145 (212)
T ss_pred HHHHCC---CEEEEECCCCc-chhhh----hhhHHHHHhCCCCcEecCcc---hhhHHHHHHHHHcCeEEEEE---CCCC
Confidence 555554 56668994321 11111 11114567788765554211 11234456666555444443 2112
Q ss_pred ccccchhhHHHHHHHcCCeEEEecCCCCccccCCCCCCCCCCChhhhhhhhhccChHHHHHHHHHHHHHhCCCHHHHHHH
Q 017700 231 SMGENQLEIKNICDSLGIRLISYSPLGLGMLTGKYTPSKLPRGPRALLFRQILPGLKPLLRSLKEIAERRGKTIPQVAIN 310 (367)
Q Consensus 231 ~~~~~~~~l~~~~~~~gi~v~a~~pl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~g~t~~qlal~ 310 (367)
.+... ..+++.+++.|+.++..+....- +... -.+.+..++++.|.+..++---
T Consensus 146 ~~~~~-~~~l~~a~~~gi~vv~~SDaH~~------------------------~d~~-~~~~~~~i~~~~gl~~~~v~~~ 199 (212)
T PRK06361 146 HSLTN-GHVARIAREAGAPLVINTDTHAP------------------------SDLI-TYEFARKVALGAGLTEKELEEA 199 (212)
T ss_pred cccch-HHHHHHHHHhCCcEEEECCCCCH------------------------HHHH-HHHHHHHHHcCCCCCHHHHHHH
Confidence 22223 37999999999998776554420 0111 2367888888888888876544
Q ss_pred H
Q 017700 311 W 311 (367)
Q Consensus 311 ~ 311 (367)
+
T Consensus 200 ~ 200 (212)
T PRK06361 200 L 200 (212)
T ss_pred H
Confidence 4
No 195
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=29.59 E-value=4.4e+02 Score=24.06 Aligned_cols=105 Identities=16% Similarity=0.059 Sum_probs=50.1
Q ss_pred ChHHHHHHHHHHHhhhCCCcEEEEEeccCCC---CCCChhHHHHHHHHHHHHHc-CcEeEEeecCC---ChHHHHHHHHH
Q 017700 140 TPGQFVNACRASLARLQIEQIGIGQLHWSTA---NYAPPQELALWNGLVAMYEK-GLVRAVGVSNY---GPNQLVKIHDY 212 (367)
Q Consensus 140 ~~~~i~~~l~~sL~~Lg~d~iDl~~lH~~~~---~~~~~~~~~~~~~L~~l~~~-G~ir~iGvS~~---~~~~l~~~~~~ 212 (367)
+.+.. ..+-+.|.++|+++|++-+...... ...+.... -++.++.+++. +..+...+... ....++.+.+
T Consensus 20 ~~~~k-~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~~~~~~~~-~~e~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~- 96 (263)
T cd07943 20 TLEQV-RAIARALDAAGVPLIEVGHGDGLGGSSLNYGFAAHT-DEEYLEAAAEALKQAKLGVLLLPGIGTVDDLKMAAD- 96 (263)
T ss_pred CHHHH-HHHHHHHHHcCCCEEEeecCCCCCCcccccCCCCCC-hHHHHHHHHHhccCCEEEEEecCCccCHHHHHHHHH-
Confidence 45444 4444558888999999876532110 00000001 24555665442 33555555422 2333333332
Q ss_pred HHhcCCCceeEEeeecccccccchhhHHHHHHHcCCeEEEe
Q 017700 213 LTARGVPLCSAQVQFSLLSMGENQLEIKNICDSLGIRLISY 253 (367)
Q Consensus 213 ~~~~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~v~a~ 253 (367)
.+ ++.+.+.++.-+-... .+.+++++++|+.+...
T Consensus 97 ---~g--~~~iri~~~~s~~~~~-~~~i~~ak~~G~~v~~~ 131 (263)
T cd07943 97 ---LG--VDVVRVATHCTEADVS-EQHIGAARKLGMDVVGF 131 (263)
T ss_pred ---cC--CCEEEEEechhhHHHH-HHHHHHHHHCCCeEEEE
Confidence 23 3444443333221122 36788888888776543
No 196
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=29.48 E-value=3.5e+02 Score=26.89 Aligned_cols=107 Identities=15% Similarity=0.188 Sum_probs=72.6
Q ss_pred HHHHHHHHCCCCEEeCCCCcCCCCCCChHHHHHHHHHhhCCCCCCCCCcEEEEeeccCCCCCCChHHHHHHHHHHHhhhC
Q 017700 77 QTFNLAVENGINLFDTADSYGTGRLNGKSEKLLGKFISEIPGQKQVQNNIVIATKFAAYPWRLTPGQFVNACRASLARLQ 156 (367)
Q Consensus 77 ~~l~~A~~~Gi~~~DTA~~Yg~~~~~g~sE~~lG~al~~~~~~~~~R~~v~i~tK~~~~~~~~~~~~i~~~l~~sL~~Lg 156 (367)
.+|..++++| .+-..-.||. +|..-..|.+.|.... ...+.-.+-+. .+.++++..++++.+.++
T Consensus 37 ~~lrr~v~~~--~l~SmIl~GP---PG~GKTTlA~liA~~~-----~~~f~~~sAv~-----~gvkdlr~i~e~a~~~~~ 101 (436)
T COG2256 37 KPLRRAVEAG--HLHSMILWGP---PGTGKTTLARLIAGTT-----NAAFEALSAVT-----SGVKDLREIIEEARKNRL 101 (436)
T ss_pred chHHHHHhcC--CCceeEEECC---CCCCHHHHHHHHHHhh-----CCceEEecccc-----ccHHHHHHHHHHHHHHHh
Confidence 5688899887 3445567997 4777888999987742 22333222221 168899999999988887
Q ss_pred CCcEEEEEeccCCCCCCChhHHHHHHHHHHHHHcCcEeEEeecCCCh
Q 017700 157 IEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKGLVRAVGVSNYGP 203 (367)
Q Consensus 157 ~d~iDl~~lH~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvS~~~~ 203 (367)
..+=-+++|...- .+. ...-++|.-.++.|.|-.||-++-++
T Consensus 102 ~gr~tiLflDEIH-Rfn----K~QQD~lLp~vE~G~iilIGATTENP 143 (436)
T COG2256 102 LGRRTILFLDEIH-RFN----KAQQDALLPHVENGTIILIGATTENP 143 (436)
T ss_pred cCCceEEEEehhh-hcC----hhhhhhhhhhhcCCeEEEEeccCCCC
Confidence 5555566654321 111 11347889999999999999988765
No 197
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=29.37 E-value=4.5e+02 Score=24.17 Aligned_cols=102 Identities=8% Similarity=-0.017 Sum_probs=60.5
Q ss_pred ChHHHHHHHHHHHhhhCCCcEEEEEeccCCCCCCChhHHHHHHHHHHHHHcCcEeEEeecCCChHHHHHHHHHHHhcCCC
Q 017700 140 TPGQFVNACRASLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKGLVRAVGVSNYGPNQLVKIHDYLTARGVP 219 (367)
Q Consensus 140 ~~~~i~~~l~~sL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~ 219 (367)
+.+.+.+...+. ..-|-|.||+-.= . . ...+.+.+...++.+++.-.+ -|-|-++.++.++++++.++ |.
T Consensus 23 d~~~i~~~A~~~-~~~GAdiIDVg~~--~--~-~~eE~~r~~~~v~~l~~~~~~-plsIDT~~~~v~eaaL~~~~--G~- 92 (261)
T PRK07535 23 DAAFIQKLALKQ-AEAGADYLDVNAG--T--A-VEEEPETMEWLVETVQEVVDV-PLCIDSPNPAAIEAGLKVAK--GP- 92 (261)
T ss_pred CHHHHHHHHHHH-HHCCCCEEEECCC--C--C-chhHHHHHHHHHHHHHHhCCC-CEEEeCCCHHHHHHHHHhCC--CC-
Confidence 455565555554 3679999998532 1 1 111233355666666654222 47888899999998888643 22
Q ss_pred ceeEEeeecccccccchhhHHHHHHHcCCeEEEecC
Q 017700 220 LCSAQVQFSLLSMGENQLEIKNICDSLGIRLISYSP 255 (367)
Q Consensus 220 ~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~v~a~~p 255 (367)
..+|-+ |... .....+++.++++|+.++.+.-
T Consensus 93 ~iINsI--s~~~--~~~~~~~~l~~~~g~~vv~m~~ 124 (261)
T PRK07535 93 PLINSV--SAEG--EKLEVVLPLVKKYNAPVVALTM 124 (261)
T ss_pred CEEEeC--CCCC--ccCHHHHHHHHHhCCCEEEEec
Confidence 223322 2211 1122789999999999988643
No 198
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=29.34 E-value=4.7e+02 Score=24.31 Aligned_cols=112 Identities=21% Similarity=0.092 Sum_probs=64.4
Q ss_pred CCCChHHHHHHHHHHHhhhCCCcEEEEEeccCCCCCCChhHHHHHHHHHHHHH--cCcE-eEEeecCCChHHHHHHHHHH
Q 017700 137 WRLTPGQFVNACRASLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYE--KGLV-RAVGVSNYGPNQLVKIHDYL 213 (367)
Q Consensus 137 ~~~~~~~i~~~l~~sL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~~~~L~~l~~--~G~i-r~iGvS~~~~~~l~~~~~~~ 213 (367)
...+.+.+++-++..+..-|+ |-+++-.-..++..+..+|-.+.++..++ .|++ --.|++..+..+..++.+.+
T Consensus 19 g~iD~~~~~~li~~l~~~~Gv---~gi~v~GstGE~~~Ls~eEr~~~~~~~~~~~~~~~~viagvg~~~t~~ai~~a~~a 95 (293)
T PRK04147 19 GQIDEQGLRRLVRFNIEKQGI---DGLYVGGSTGEAFLLSTEEKKQVLEIVAEEAKGKVKLIAQVGSVNTAEAQELAKYA 95 (293)
T ss_pred CCcCHHHHHHHHHHHHhcCCC---CEEEECCCccccccCCHHHHHHHHHHHHHHhCCCCCEEecCCCCCHHHHHHHHHHH
Confidence 456788888888877775554 44555543223333333333444443333 3543 56788777777777777778
Q ss_pred HhcCCCceeEEeeecccccccchhhHHH----HHHHcCCeEEEec
Q 017700 214 TARGVPLCSAQVQFSLLSMGENQLEIKN----ICDSLGIRLISYS 254 (367)
Q Consensus 214 ~~~~~~~~~~q~~~n~~~~~~~~~~l~~----~~~~~gi~v~a~~ 254 (367)
+..|.+-.++..+|..- ..+.++++ .|..-+++|+.|.
T Consensus 96 ~~~Gad~v~v~~P~y~~---~~~~~l~~~f~~va~a~~lPv~iYn 137 (293)
T PRK04147 96 TELGYDAISAVTPFYYP---FSFEEICDYYREIIDSADNPMIVYN 137 (293)
T ss_pred HHcCCCEEEEeCCcCCC---CCHHHHHHHHHHHHHhCCCCEEEEe
Confidence 88887655555554321 11224444 3455588999985
No 199
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=29.24 E-value=6.3e+02 Score=25.80 Aligned_cols=107 Identities=15% Similarity=0.174 Sum_probs=56.5
Q ss_pred HHHHHHHHHhhCCCCCCCCCc-EEEEeeccCCCCCCChHHHHHHHHHHHhhhCCCcEEEEEeccCCCCCCC-hhHHHHHH
Q 017700 105 SEKLLGKFISEIPGQKQVQNN-IVIATKFAAYPWRLTPGQFVNACRASLARLQIEQIGIGQLHWSTANYAP-PQELALWN 182 (367)
Q Consensus 105 sE~~lG~al~~~~~~~~~R~~-v~i~tK~~~~~~~~~~~~i~~~l~~sL~~Lg~d~iDl~~lH~~~~~~~~-~~~~~~~~ 182 (367)
+|+.|-++++...+ ..+.+ |+|.|-+ ..+-|-..++...+.++. .++++.++.+...... ...+.++.
T Consensus 69 ~~ekL~~aI~~~~~--~~~P~~I~V~sTC-------~seiIGdDi~~v~~~~~~-~~~Vi~v~t~gf~~~~~~G~~~al~ 138 (519)
T PRK02910 69 TAELLKDTLRRADE--RFQPDLIVVGPSC-------TAELLQEDLGGLAKHAGL-PIPVLPLELNAYRVKENWAADETFY 138 (519)
T ss_pred hHHHHHHHHHHHHH--hcCCCEEEEeCCc-------HHHHhccCHHHHHHHhCC-CCCEEEEecCCcccccchHHHHHHH
Confidence 35566666655321 12333 4566655 344444455555555554 3568999987433211 11222233
Q ss_pred HHH-HHH-----------HcCcEeEEeecCC---ChHHHHHHHHHHHhcCCCce
Q 017700 183 GLV-AMY-----------EKGLVRAVGVSNY---GPNQLVKIHDYLTARGVPLC 221 (367)
Q Consensus 183 ~L~-~l~-----------~~G~ir~iGvS~~---~~~~l~~~~~~~~~~~~~~~ 221 (367)
.+- .+. +.+.|.=||.++. .+..+.++.+..+..|+.+.
T Consensus 139 ~lv~~~~~~~~~~~~~~~~~~~VNIiG~~~l~f~~~~D~~EikrlL~~~Gi~vn 192 (519)
T PRK02910 139 QLVRALAKKAAELPQPKTARPSVNLLGPTALGFHHRDDLTELRRLLATLGIDVN 192 (519)
T ss_pred HHHHHHhhhcccccccCCCCCeEEEEecCccCCCChhHHHHHHHHHHHcCCeEE
Confidence 222 222 2356888998652 45677788888777776543
No 200
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=29.20 E-value=4.8e+02 Score=25.62 Aligned_cols=26 Identities=15% Similarity=0.156 Sum_probs=18.6
Q ss_pred ChHHHHHHHHHHHhhhCCCcEEEEEec
Q 017700 140 TPGQFVNACRASLARLQIEQIGIGQLH 166 (367)
Q Consensus 140 ~~~~i~~~l~~sL~~Lg~d~iDl~~lH 166 (367)
+.+++++.++..+ .|+.++|.++.+.
T Consensus 180 t~e~~~~tl~~~~-~l~p~~is~y~L~ 205 (400)
T PRK07379 180 TLEDWQASLEAAI-ALNPTHLSCYDLV 205 (400)
T ss_pred CHHHHHHHHHHHH-cCCCCEEEEecce
Confidence 6777777776555 4778888887776
No 201
>PLN02681 proline dehydrogenase
Probab=29.17 E-value=6.1e+02 Score=25.56 Aligned_cols=174 Identities=14% Similarity=0.063 Sum_probs=92.6
Q ss_pred HHHHHHHHHHHCCCC-EEeCCCCcCCCCCCChHHHHHHHHHhhCCCCCCCCCcEEEEeeccCCCCCCChHHHHHHHHHHH
Q 017700 74 QLQQTFNLAVENGIN-LFDTADSYGTGRLNGKSEKLLGKFISEIPGQKQVQNNIVIATKFAAYPWRLTPGQFVNACRASL 152 (367)
Q Consensus 74 ~a~~~l~~A~~~Gi~-~~DTA~~Yg~~~~~g~sE~~lG~al~~~~~~~~~R~~v~i~tK~~~~~~~~~~~~i~~~l~~sL 152 (367)
...++++.|.+.|++ .||.=..|=. .--..+.-+..+.+... ..+.-|+++--..-. + +.+.+...++.+.
T Consensus 221 rl~~i~~~A~~~gv~l~IDAE~s~~q----~aid~l~~~l~~~yN~~-~~~~~V~~T~QaYLk--~-t~~~l~~~l~~a~ 292 (455)
T PLN02681 221 RLQKLCERAAQLGVPLLIDAEYTSLQ----PAIDYITYDLAREFNKG-KDRPIVYGTYQAYLK--D-ARERLRLDLERSE 292 (455)
T ss_pred HHHHHHHHHHHCCCEEEEeCCcccch----hHHHHHHHHHHHHhccc-cCCCcEEEEEeCccc--c-CHHHHHHHHHHHH
Confidence 356788999999998 5676555433 22233444444444210 012335554443221 1 6777777777664
Q ss_pred hh---hCC-----CcEEEE-----EeccCCCCCCCh-hHHHHH-HHHHHHHH---cCcEeEEeecCCChHHHHHHHHHHH
Q 017700 153 AR---LQI-----EQIGIG-----QLHWSTANYAPP-QELALW-NGLVAMYE---KGLVRAVGVSNYGPNQLVKIHDYLT 214 (367)
Q Consensus 153 ~~---Lg~-----d~iDl~-----~lH~~~~~~~~~-~~~~~~-~~L~~l~~---~G~ir~iGvS~~~~~~l~~~~~~~~ 214 (367)
+. +|+ -|+|-= .+.|+.+-+... +.+..+ ..++.+.+ .|.+ ++.|.+|+.+.+..+.+.+.
T Consensus 293 ~~g~~~gvKLVRGAY~e~E~~~a~~~g~~~pi~~~k~~Td~~Y~~~~~~lL~~~~~~~~-~~~vATHN~~Si~~a~~~~~ 371 (455)
T PLN02681 293 REGVPLGAKLVRGAYLSLERRLAASLGVPSPVHDTIQDTHACYNRCAEFLLEKASNGDG-EVMLATHNVESGELAAAKMN 371 (455)
T ss_pred hcCCCcceEEEecCCcchhhhhHHhcCCCCCCcCCHHHHHHHHHHHHHHHhhhhccCCe-eeEEecCCHHHHHHHHHHHH
Confidence 42 222 132210 111221111111 112222 33344444 3443 88899999999999999888
Q ss_pred hcCCCceeEEeeecccccccchhhHHHHHHHcCCeEEEecCCCC
Q 017700 215 ARGVPLCSAQVQFSLLSMGENQLEIKNICDSLGIRLISYSPLGL 258 (367)
Q Consensus 215 ~~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~v~a~~pl~~ 258 (367)
..+++..-..+.|-.+.- ..+ .+-....+.|..|.-|.|+|.
T Consensus 372 ~~gi~~~~~~veF~qL~G-M~d-~ls~~L~~~G~~V~kYvPyG~ 413 (455)
T PLN02681 372 ELGLHKGDPRVQFAQLLG-MSD-NLSFGLGNAGFRVSKYLPYGP 413 (455)
T ss_pred HcCCCCCCCCEEEeccCC-CCH-HHHHHHHhcCCCEEEEeeccC
Confidence 777654322333333321 112 555566778999999999985
No 202
>TIGR00190 thiC thiamine biosynthesis protein ThiC. The thiC ortholog is designated thiA in Bacillus subtilis.
Probab=28.84 E-value=5.8e+02 Score=25.26 Aligned_cols=152 Identities=13% Similarity=0.109 Sum_probs=84.9
Q ss_pred CHHHHHHHHHHHHHCCCCEE-eCCCCcCCCCCCChHHHHHHHHHhhCCCCCCCCCcE--E-EEeeccCCCCCCChHHHHH
Q 017700 71 MDSQLQQTFNLAVENGINLF-DTADSYGTGRLNGKSEKLLGKFISEIPGQKQVQNNI--V-IATKFAAYPWRLTPGQFVN 146 (367)
Q Consensus 71 ~~~~a~~~l~~A~~~Gi~~~-DTA~~Yg~~~~~g~sE~~lG~al~~~~~~~~~R~~v--~-i~tK~~~~~~~~~~~~i~~ 146 (367)
+.++=.+-++.|++.|-..+ |-+ ..|+ -.++=.+.|+..+- +--.| | ...+......+.+.+.+.+
T Consensus 75 d~~~E~~K~~~A~~~GADtiMDLS-tGgd------l~~iR~~il~~s~v---pvGTVPiYqa~~~~~~~~~~mt~d~~~~ 144 (423)
T TIGR00190 75 DIEEEVEKALIAIKYGADTVMDLS-TGGD------LDEIRKAILDAVPV---PVGTVPIYQAAEKVHGAVEDMDEDDMFR 144 (423)
T ss_pred CHHHHHHHHHHHHHcCCCeEeecc-CCCC------HHHHHHHHHHcCCC---CccCccHHHHHHHhcCChhhCCHHHHHH
Confidence 34555566899999998755 444 3344 34333333433221 11111 0 0001101123457888888
Q ss_pred HHHHHHhhhCCCcEEEEEeccCCCCCCChhHHHHHHHHHHHHHcCcEeEEeecCCChHHHHHHHHHHHhcCCCceeEEee
Q 017700 147 ACRASLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKGLVRAVGVSNYGPNQLVKIHDYLTARGVPLCSAQVQ 226 (367)
Q Consensus 147 ~l~~sL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~ 226 (367)
.+++..+ |-+|.+-||.- + ..+.++.++++|++ .|+-+.+..-+...+.. + -.
T Consensus 145 ~ie~qa~----dGVDfmTiH~G------i----~~~~~~~~~~~~R~--~giVSRGGs~~~~WM~~---~--------~~ 197 (423)
T TIGR00190 145 AIEKQAK----DGVDFMTIHAG------V----LLEYVERLKRSGRI--TGIVSRGGAILAAWMLH---H--------HK 197 (423)
T ss_pred HHHHHHH----hCCCEEEEccc------h----hHHHHHHHHhCCCc--cCeecCcHHHHHHHHHH---c--------CC
Confidence 8888776 45777889953 1 46899999999965 45544455544444333 1 11
Q ss_pred ecccccccchhhHHHHHHHcCCeEEEecCCCCccc
Q 017700 227 FSLLSMGENQLEIKNICDSLGIRLISYSPLGLGML 261 (367)
Q Consensus 227 ~n~~~~~~~~~~l~~~~~~~gi~v~a~~pl~~G~L 261 (367)
=||+.... + ++++.|++++|.+--.-.|-.|-+
T Consensus 198 ENPlye~f-D-~lLeI~~~yDVtlSLGDglRPG~i 230 (423)
T TIGR00190 198 ENPLYKNF-D-YILEIAKEYDVTLSLGDGLRPGCI 230 (423)
T ss_pred cCchHHHH-H-HHHHHHHHhCeeeeccCCcCCCcc
Confidence 23332222 2 899999999999854444444433
No 203
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=28.52 E-value=2.4e+02 Score=28.11 Aligned_cols=74 Identities=11% Similarity=0.057 Sum_probs=46.3
Q ss_pred HHHHHHHHHcCcEe-----EEeecCCChHH------HHHHHHHHHhcCCCceeEEeeecccccccchhhHHHHHHHcCCe
Q 017700 181 WNGLVAMYEKGLVR-----AVGVSNYGPNQ------LVKIHDYLTARGVPLCSAQVQFSLLSMGENQLEIKNICDSLGIR 249 (367)
Q Consensus 181 ~~~L~~l~~~G~ir-----~iGvS~~~~~~------l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~ 249 (367)
++.|++|.++|+|+ ++++.+..... -.++.+.++..+++-++.-..+-.++|... -+....++.||+
T Consensus 289 lD~LreLekEG~IG~L~~~fyst~G~gt~~~~a~~~g~eIa~~Lk~dgVDAVILTstCgtC~r~~a--~m~keiE~~GiP 366 (431)
T TIGR01918 289 VDVLRDYEKEGKIGELHEYFYSTVGNGTTVAESKQFAKEFVVELKQGGVDAVILTSTUGTCTRCGA--TMVKEIERAGIP 366 (431)
T ss_pred HHHHHHHHHcCCcccccCeeEEcCCCCchHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCcchhHHH--HHHHHHHHcCCC
Confidence 58999999999995 55554443322 234445555555554333334445555443 567788889999
Q ss_pred EEEecCC
Q 017700 250 LISYSPL 256 (367)
Q Consensus 250 v~a~~pl 256 (367)
++-+..+
T Consensus 367 vv~~~~~ 373 (431)
T TIGR01918 367 VVHMCTV 373 (431)
T ss_pred EEEEeec
Confidence 9887664
No 204
>PLN02428 lipoic acid synthase
Probab=28.49 E-value=5.5e+02 Score=24.87 Aligned_cols=170 Identities=13% Similarity=0.145 Sum_probs=89.0
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEeCC-C---CcCCCCCCChHHHHHHHHHhhCCCCCCCCCcEEEEeeccCCCCCCChHHH
Q 017700 69 ESMDSQLQQTFNLAVENGINLFDTA-D---SYGTGRLNGKSEKLLGKFISEIPGQKQVQNNIVIATKFAAYPWRLTPGQF 144 (367)
Q Consensus 69 ~~~~~~a~~~l~~A~~~Gi~~~DTA-~---~Yg~~~~~g~sE~~lG~al~~~~~~~~~R~~v~i~tK~~~~~~~~~~~~i 144 (367)
..+.++-.++.+.+.+.|++++=.. . .|.+ +.++ .+-+.++...+ .-.++.|..=. +. ...+
T Consensus 129 ~~d~~Ep~~vA~~v~~~Glk~vvltSg~rddl~D----~ga~-~~~elir~Ir~---~~P~i~Ie~L~-pd-f~~d---- 194 (349)
T PLN02428 129 PPDPDEPENVAEAIASWGVDYVVLTSVDRDDLPD----GGSG-HFAETVRRLKQ---LKPEILVEALV-PD-FRGD---- 194 (349)
T ss_pred CCChhhHHHHHHHHHHcCCCEEEEEEcCCCCCCc----ccHH-HHHHHHHHHHH---hCCCcEEEEeC-cc-ccCC----
Confidence 4455677788888889999876322 1 2322 2233 33344444211 11123333311 11 1101
Q ss_pred HHHHHHHHhhhCCCcEEEEEeccCCCC------C--CChhHHHHHHHHHHHHHc--CcEe----EEeecCCChHHHHHHH
Q 017700 145 VNACRASLARLQIEQIGIGQLHWSTAN------Y--APPQELALWNGLVAMYEK--GLVR----AVGVSNYGPNQLVKIH 210 (367)
Q Consensus 145 ~~~l~~sL~~Lg~d~iDl~~lH~~~~~------~--~~~~~~~~~~~L~~l~~~--G~ir----~iGvS~~~~~~l~~~~ 210 (367)
++.|+.|.-.-+|. +-|+++.. - .....++.++.|+.+++. |..- =+|+ +-+.+++.+.+
T Consensus 195 ----~elL~~L~eAG~d~-i~hnlETv~rL~~~Ir~~~~sye~~Le~L~~ak~~~pGi~tkSg~MvGL-GET~Edv~e~l 268 (349)
T PLN02428 195 ----LGAVETVATSGLDV-FAHNIETVERLQRIVRDPRAGYKQSLDVLKHAKESKPGLLTKTSIMLGL-GETDEEVVQTM 268 (349)
T ss_pred ----HHHHHHHHHcCCCE-EccCccCcHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEec-CCCHHHHHHHH
Confidence 33444443333555 34666421 0 012345688999999998 7653 2466 55677787777
Q ss_pred HHHHhcCCCceeE-E--------eeecccccccchhhHHHHHHHcCCeEEEecCCCC
Q 017700 211 DYLTARGVPLCSA-Q--------VQFSLLSMGENQLEIKNICDSLGIRLISYSPLGL 258 (367)
Q Consensus 211 ~~~~~~~~~~~~~-q--------~~~n~~~~~~~~~~l~~~~~~~gi~v~a~~pl~~ 258 (367)
+.+...++++..+ | +..+.+-...+-..+-+++.+.|..-++.+||-.
T Consensus 269 ~~Lrelgvd~vtigqyL~Ps~~h~~v~~~v~p~~f~~~~~~~~~~gf~~v~sgp~vr 325 (349)
T PLN02428 269 EDLRAAGVDVVTFGQYLRPTKRHLPVKEYVTPEKFEFWREYGEEMGFRYVASGPLVR 325 (349)
T ss_pred HHHHHcCCCEEeeccccCCCcceeeeecccCHHHHHHHHHHHHHcCCceEEecCccc
Confidence 7777766543222 1 1222221112224677888888999999888864
No 205
>COG2069 CdhD CO dehydrogenase/acetyl-CoA synthase delta subunit (corrinoid Fe-S protein) [Energy production and conversion]
Probab=28.32 E-value=5.1e+02 Score=24.58 Aligned_cols=98 Identities=12% Similarity=0.132 Sum_probs=58.6
Q ss_pred HHhhhCCCcEEEEEeccCCCC--CCChhHHHHHHHHHHHHHcCcE-eEEeecCCC---hHHHHHHHHHHHhcCCCceeEE
Q 017700 151 SLARLQIEQIGIGQLHWSTAN--YAPPQELALWNGLVAMYEKGLV-RAVGVSNYG---PNQLVKIHDYLTARGVPLCSAQ 224 (367)
Q Consensus 151 sL~~Lg~d~iDl~~lH~~~~~--~~~~~~~~~~~~L~~l~~~G~i-r~iGvS~~~---~~~l~~~~~~~~~~~~~~~~~q 224 (367)
..++.|. |++-+|-...+ ..+-...++.+.||++.+.=++ --||=|+-. ++.++++.+.|+....-...
T Consensus 159 ~Vk~fga---dmvTiHlIsTdPki~D~p~~EAak~lEdvLqAVdvPiiiGGSGnpeKDpeVlekaAEvaEGeRclLaS-- 233 (403)
T COG2069 159 CVKKFGA---DMVTIHLISTDPKIKDTPAKEAAKTLEDVLQAVDVPIIIGGSGNPEKDPEVLEKAAEVAEGERCLLAS-- 233 (403)
T ss_pred HHHHhCC---ceEEEEeecCCccccCCCHHHHHHHHHHHHHhcCcCEEecCCCCCccCHHHHHHHHHhhcCceEEeec--
Confidence 3455665 55666654221 1112334578888888887666 467777753 45677777765532221211
Q ss_pred eeecccccccchhhHHHHHHHcCCeEEEecCCCC
Q 017700 225 VQFSLLSMGENQLEIKNICDSLGIRLISYSPLGL 258 (367)
Q Consensus 225 ~~~n~~~~~~~~~~l~~~~~~~gi~v~a~~pl~~ 258 (367)
... +.+. ..+.+++.++|-.|++|+++--
T Consensus 234 anl---dlDy--~~ia~AA~ky~H~VLswt~~D~ 262 (403)
T COG2069 234 ANL---DLDY--ERIAEAALKYDHVVLSWTQMDV 262 (403)
T ss_pred ccc---ccCH--HHHHHHHHhcCceEEEeeccCh
Confidence 111 2122 2789999999999999998854
No 206
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=28.18 E-value=3.3e+02 Score=25.56 Aligned_cols=50 Identities=12% Similarity=0.207 Sum_probs=39.1
Q ss_pred cEEEEEeccCCCCCCChhHHHHHHHHHHHHHcCcEeEEeecCCChHHHHHHH
Q 017700 159 QIGIGQLHWSTANYAPPQELALWNGLVAMYEKGLVRAVGVSNYGPNQLVKIH 210 (367)
Q Consensus 159 ~iDl~~lH~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~ 210 (367)
..++++|..|....++.....+|+.|.+++++|+ .|=+++|..+.++.+.
T Consensus 156 ~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~--till~sH~l~e~~~~~ 205 (306)
T PRK13537 156 DPDVLVLDEPTTGLDPQARHLMWERLRSLLARGK--TILLTTHFMEEAERLC 205 (306)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCC--EEEEECCCHHHHHHhC
Confidence 6789999988766667777789999999998886 4557888877666543
No 207
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=28.13 E-value=5.9e+02 Score=25.11 Aligned_cols=32 Identities=19% Similarity=0.300 Sum_probs=22.4
Q ss_pred CcEeEEeecCCC---hHHHHHHHHHHHhcCCCcee
Q 017700 191 GLVRAVGVSNYG---PNQLVKIHDYLTARGVPLCS 222 (367)
Q Consensus 191 G~ir~iGvS~~~---~~~l~~~~~~~~~~~~~~~~ 222 (367)
..|.-||.++.+ +..+.++.+..+..|+.+.+
T Consensus 163 ~~VNiiG~~~~~~~~~~d~~ei~~lL~~~Gl~v~~ 197 (430)
T cd01981 163 PSVNLIGPSSLGFHNRHDCRELKRLLHTLGIEVNV 197 (430)
T ss_pred CcEEEEcCCCCCCCCcchHHHHHHHHHHcCCeEEE
Confidence 568889987644 56777777777777765533
No 208
>PRK14463 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=27.65 E-value=5.7e+02 Score=24.70 Aligned_cols=98 Identities=14% Similarity=0.076 Sum_probs=62.1
Q ss_pred EEE-EEeccCCCCC--------CChhHHHHHHHHHHHHHcC--c--EeEEeec--CCChHHHHHHHHHHHhcCCCceeEE
Q 017700 160 IGI-GQLHWSTANY--------APPQELALWNGLVAMYEKG--L--VRAVGVS--NYGPNQLVKIHDYLTARGVPLCSAQ 224 (367)
Q Consensus 160 iDl-~~lH~~~~~~--------~~~~~~~~~~~L~~l~~~G--~--ir~iGvS--~~~~~~l~~~~~~~~~~~~~~~~~q 224 (367)
+-| +-||.+++.. .....+++++++.+....+ + |+++=+. |.+.+++.++.+.++. .+..++-
T Consensus 207 ~~LaiSL~a~~~e~r~~I~pink~~~l~~l~~a~~~~~~~~~~~v~ieyvLI~GvNDs~e~~~~L~~ll~~--l~~~vnl 284 (349)
T PRK14463 207 VNLAVSLNATTDEVRDRIMPVNRRYPLAELLAACKAFPLPGRRKITIEYVMIRGLNDSLEDAKRLVRLLSD--IPSKVNL 284 (349)
T ss_pred eEEEEeCCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHhcCCeEEEEEEEeCCCCCCHHHHHHHHHHHhc--cCceEEE
Confidence 444 6688775321 1112355777777766644 2 3455554 3455888888888765 3457788
Q ss_pred eeecccccc----cch---hhHHHHHHHcCCeEEEecCCCCc
Q 017700 225 VQFSLLSMG----ENQ---LEIKNICDSLGIRLISYSPLGLG 259 (367)
Q Consensus 225 ~~~n~~~~~----~~~---~~l~~~~~~~gi~v~a~~pl~~G 259 (367)
++||+.... +.. ..+....+++||.+......|.-
T Consensus 285 IPyn~~~~~~~~~ps~e~i~~f~~~L~~~gi~v~vR~~~G~d 326 (349)
T PRK14463 285 IPFNEHEGCDFRSPTQEAIDRFHKYLLDKHVTVITRSSRGSD 326 (349)
T ss_pred EecCCCCCCCCCCCCHHHHHHHHHHHHHCCceEEEeCCCCcc
Confidence 999987422 111 34677788899999998777654
No 209
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=27.38 E-value=91 Score=24.74 Aligned_cols=29 Identities=10% Similarity=0.165 Sum_probs=24.7
Q ss_pred CCHHHHHHHHHHHHHCCCCEEeCCCCcCC
Q 017700 70 SMDSQLQQTFNLAVENGINLFDTADSYGT 98 (367)
Q Consensus 70 ~~~~~a~~~l~~A~~~Gi~~~DTA~~Yg~ 98 (367)
++.+.+.+....+++.|++.||.+..|-.
T Consensus 74 ~~~~~~~~~~~~~~~~g~~ViD~s~~~R~ 102 (121)
T PF01118_consen 74 LPHGASKELAPKLLKAGIKVIDLSGDFRL 102 (121)
T ss_dssp SCHHHHHHHHHHHHHTTSEEEESSSTTTT
T ss_pred CchhHHHHHHHHHhhCCcEEEeCCHHHhC
Confidence 34577889999999999999999999853
No 210
>PHA02128 hypothetical protein
Probab=27.31 E-value=1.1e+02 Score=24.00 Aligned_cols=75 Identities=15% Similarity=0.231 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHcCcEeEEeecCCChHHHHHHHHHHHh------------cCCC-c---eeEEeeecccccccchhhHHH
Q 017700 178 LALWNGLVAMYEKGLVRAVGVSNYGPNQLVKIHDYLTA------------RGVP-L---CSAQVQFSLLSMGENQLEIKN 241 (367)
Q Consensus 178 ~~~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~------------~~~~-~---~~~q~~~n~~~~~~~~~~l~~ 241 (367)
.++++..+++..+|-+|-|-...-+..++..+...-=+ ...| + .....+|++-.|...+ ++++
T Consensus 60 ~gl~~lane~~aqgg~r~itmn~ankrhv~dmv~~~wrgdi~ist~selt~~cp~vkflmideseytltsrh~rq-eiyd 138 (151)
T PHA02128 60 TGLLHLANEVSAQGGARIITMNSANKRHVQDMVSYQWRGDIRISTISELTDRCPKVKFLMIDESEYTLTSRHQRQ-EIYD 138 (151)
T ss_pred chHHHHHHHHHhcCCeEEEEeccchhhHHHHHhcccccCceEEeeHHHHhccCCeeEEEEEcchhceecchhhHH-HHHh
Confidence 34678888899999999888766665555544332100 0111 1 2234456665554444 9999
Q ss_pred HHHHcCCeEEEe
Q 017700 242 ICDSLGIRLISY 253 (367)
Q Consensus 242 ~~~~~gi~v~a~ 253 (367)
|+..+|+..+.+
T Consensus 139 wagthgvefvim 150 (151)
T PHA02128 139 WAGTHGVEFVIM 150 (151)
T ss_pred hcccCceEEEEe
Confidence 999999998765
No 211
>COG3693 XynA Beta-1,4-xylanase [Carbohydrate transport and metabolism]
Probab=27.30 E-value=5.7e+02 Score=24.59 Aligned_cols=89 Identities=13% Similarity=0.141 Sum_probs=55.6
Q ss_pred ChHHHHHHHHHHHhhhCCCcEEEEEeccCCCCCCChhHHHHHHHHHHHHHcCc-EeEEeecCCC------hHHHHHHHHH
Q 017700 140 TPGQFVNACRASLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKGL-VRAVGVSNYG------PNQLVKIHDY 212 (367)
Q Consensus 140 ~~~~i~~~l~~sL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~~~~L~~l~~~G~-ir~iGvS~~~------~~~l~~~~~~ 212 (367)
.++.|+.+++..-+.= ..--||+=... ....+.....+++-+++|+++|. |-.||+-+|- .+........
T Consensus 169 gpd~I~~aF~~Aread--P~AkL~~NDY~-ie~~~~kr~~~~nlI~~LkekG~pIDgiG~QsH~~~~~~~~~~~~~a~~~ 245 (345)
T COG3693 169 GPDYIKLAFHIAREAD--PDAKLVINDYS-IEGNPAKRNYVLNLIEELKEKGAPIDGIGIQSHFSGDGPSIEKMRAALLK 245 (345)
T ss_pred ccHHHHHHHHHHHhhC--CCceEEeeccc-ccCChHHHHHHHHHHHHHHHCCCCccceeeeeeecCCCCCHHHHHHHHHH
Confidence 6788888888777721 12222222211 12234455668889999999999 9999986552 2334333333
Q ss_pred HHhcCCCceeEEeeecccc
Q 017700 213 LTARGVPLCSAQVQFSLLS 231 (367)
Q Consensus 213 ~~~~~~~~~~~q~~~n~~~ 231 (367)
..+.|.++.|-++..+...
T Consensus 246 ~~k~Gl~i~VTELD~~~~~ 264 (345)
T COG3693 246 FSKLGLPIYVTELDMSDYT 264 (345)
T ss_pred HhhcCCCceEEEeeeeccC
Confidence 3444889988888888754
No 212
>smart00052 EAL Putative diguanylate phosphodiesterase. Putative diguanylate phosphodiesterase, present in a variety of bacteria.
Probab=27.17 E-value=4.2e+02 Score=23.05 Aligned_cols=100 Identities=12% Similarity=0.194 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHhhhCCC--cEEEEEeccCCCCCCChhHHHHHHHHHHHHHcCcEeEEeecCCChHH--HHHHHHHHHhcC
Q 017700 142 GQFVNACRASLARLQIE--QIGIGQLHWSTANYAPPQELALWNGLVAMYEKGLVRAVGVSNYGPNQ--LVKIHDYLTARG 217 (367)
Q Consensus 142 ~~i~~~l~~sL~~Lg~d--~iDl~~lH~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~--l~~~~~~~~~~~ 217 (367)
......+.+.++..+.. +|-+-+-.. . .......+.+.++.|++.|- .+.+.+++... +..+..
T Consensus 99 ~~~~~~l~~~l~~~~~~~~~lvlei~e~---~-~~~~~~~~~~~i~~l~~~G~--~ialddfg~~~~~~~~l~~------ 166 (241)
T smart00052 99 PDLVPRVLELLEETGLPPQRLELEITES---V-LLDDDESAVATLQRLRELGV--RIALDDFGTGYSSLSYLKR------ 166 (241)
T ss_pred chHHHHHHHHHHHcCCCHHHEEEEEeCh---h-hhcChHHHHHHHHHHHHCCC--EEEEeCCCCcHHHHHHHHh------
Confidence 34556667777776654 333322221 1 01112234589999999998 67888876543 333332
Q ss_pred CCceeEEeeecccccccc-------hhhHHHHHHHcCCeEEEe
Q 017700 218 VPLCSAQVQFSLLSMGEN-------QLEIKNICDSLGIRLISY 253 (367)
Q Consensus 218 ~~~~~~q~~~n~~~~~~~-------~~~l~~~~~~~gi~v~a~ 253 (367)
.+++.+-+..+....... -..++..|+..|+.|++-
T Consensus 167 l~~d~iKld~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~via~ 209 (241)
T smart00052 167 LPVDLLKIDKSFVRDLQTDPEDEAIVQSIIELAQKLGLQVVAE 209 (241)
T ss_pred CCCCeEEECHHHHhhhccChhHHHHHHHHHHHHHHCCCeEEEe
Confidence 567777777666532211 136788999999999885
No 213
>PRK11865 pyruvate ferredoxin oxidoreductase subunit beta; Provisional
Probab=27.12 E-value=5.4e+02 Score=24.32 Aligned_cols=121 Identities=10% Similarity=0.036 Sum_probs=66.1
Q ss_pred HHHHHHHHHHCCCCEEeCCCCcCCCCCCChHHHHHHHHHhhCCCCCCCCCcEEEEeec-cCCCCCCChHHHHHHHHHHHh
Q 017700 75 LQQTFNLAVENGINLFDTADSYGTGRLNGKSEKLLGKFISEIPGQKQVQNNIVIATKF-AAYPWRLTPGQFVNACRASLA 153 (367)
Q Consensus 75 a~~~l~~A~~~Gi~~~DTA~~Yg~~~~~g~sE~~lG~al~~~~~~~~~R~~v~i~tK~-~~~~~~~~~~~i~~~l~~sL~ 153 (367)
...+...|...|+.|+-+...|-. .+..+.+.++++. +-- -||..+. ++..|+++++.-. +..-.
T Consensus 164 kkd~~~Ia~a~g~~YVA~~~~~~~----~~l~~~i~~A~~~------~Gp-s~I~v~sPC~~~~~~~~~~~~---~~~kl 229 (299)
T PRK11865 164 KKNMPLIMAAHGIPYVATASIGYP----EDFMEKVKKAKEV------EGP-AYIQVLQPCPTGWGFPPEKTI---EIGRL 229 (299)
T ss_pred CCCHHHHHHHcCCCEEEEEeCCCH----HHHHHHHHHHHhC------CCC-EEEEEECCCCCCCCCCHHHHH---HHHHH
Confidence 456667778899999999877643 3345555565542 222 3444444 4445655555433 33333
Q ss_pred hhCCCcEEEEEeccCCC--CCCChhH-HH-HHHHHHHHHHcCcEeEEeecCCChHHHHHHHHHHH
Q 017700 154 RLQIEQIGIGQLHWSTA--NYAPPQE-LA-LWNGLVAMYEKGLVRAVGVSNYGPNQLVKIHDYLT 214 (367)
Q Consensus 154 ~Lg~d~iDl~~lH~~~~--~~~~~~~-~~-~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~ 214 (367)
...+.|.=||=+..-.. ...+... .. -...-+-|+.+|+.+++ ++++++++.+.++
T Consensus 230 Avetg~~plye~~~g~~~~~~~~~~ld~~~~~pv~~~l~~q~Rf~~L-----~~~~~~~~q~~v~ 289 (299)
T PRK11865 230 AVETGYWPLFEIENGKFKITYEPLHLDRRTRKPIEEYLKVQGRFKHL-----TEEDIEILQKYID 289 (299)
T ss_pred HHhcCceeEEEEECCeeccCCCcccccccCCCCHHHHHhhCcchhcC-----CHHHHHHHHHHHH
Confidence 33466777666652110 0111110 00 11233567779999998 6677777776643
No 214
>PLN03228 methylthioalkylmalate synthase; Provisional
Probab=27.09 E-value=4.6e+02 Score=26.84 Aligned_cols=107 Identities=16% Similarity=0.181 Sum_probs=54.5
Q ss_pred CChHHHHHHHHHHHhhhCCCcEEEEEeccCCCCCCChhHHHHHHHHHHHHHcC----------cEeEEeecCCChHHHHH
Q 017700 139 LTPGQFVNACRASLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKG----------LVRAVGVSNYGPNQLVK 208 (367)
Q Consensus 139 ~~~~~i~~~l~~sL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~~~~L~~l~~~G----------~ir~iGvS~~~~~~l~~ 208 (367)
++.++ +..+-+.|.++|+|+|.+-+ |. ..+ . -+++++.+.+.+ ..+-.+++....+.++.
T Consensus 103 fs~ee-Ki~Ia~~L~~~GVd~IEvG~---Pa--~s~-~---e~e~i~~i~~~~~~~~~~~~~l~~~i~a~~R~~~~dId~ 172 (503)
T PLN03228 103 LTPPQ-KLEIARQLAKLRVDIMEVGF---PG--SSE-E---EFEAVKTIAKTVGNEVDEETGYVPVICGIARCKKRDIEA 172 (503)
T ss_pred CCHHH-HHHHHHHHHHcCCCEEEEeC---CC--CCH-H---HHHHHHHHHHhcccccccccccceEEeeecccCHhhHHH
Confidence 34544 44556669999999999854 31 111 1 234444444332 13344666666677777
Q ss_pred HHHHHHhcCCCceeEEeeecccc------cccc-----hhhHHHHHHHcCCeEEEecC
Q 017700 209 IHDYLTARGVPLCSAQVQFSLLS------MGEN-----QLEIKNICDSLGIRLISYSP 255 (367)
Q Consensus 209 ~~~~~~~~~~~~~~~q~~~n~~~------~~~~-----~~~l~~~~~~~gi~v~a~~p 255 (367)
+.+.....+.+...+-+.-|.++ ...+ -.+.+++++++|...+.+++
T Consensus 173 a~~a~~~a~~~~V~i~i~~Sd~h~~~kl~~s~ee~l~~~~~~V~~Ak~~G~~~v~f~~ 230 (503)
T PLN03228 173 AWEALKYAKRPRILAFTSTSDIHMKYKLKKTKEEVIEMAVSSIRYAKSLGFHDIQFGC 230 (503)
T ss_pred HHHhhcccCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCceEEecc
Confidence 77652211222111222222221 1111 03578899999876455544
No 215
>PRK13505 formate--tetrahydrofolate ligase; Provisional
Probab=27.06 E-value=1.2e+02 Score=31.10 Aligned_cols=78 Identities=18% Similarity=0.248 Sum_probs=49.4
Q ss_pred HHHHHHHHHcCcEeEEeecCCCh-------HHHHHHHHHHHhcCCCceeEEeeecccccccchhhHHHHHHHcCCeEEEe
Q 017700 181 WNGLVAMYEKGLVRAVGVSNYGP-------NQLVKIHDYLTARGVPLCSAQVQFSLLSMGENQLEIKNICDSLGIRLISY 253 (367)
Q Consensus 181 ~~~L~~l~~~G~ir~iGvS~~~~-------~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~v~a~ 253 (367)
..+.+.||-.|-+..--+..-+. ..+++.++.++.+++|+.|.-+.|.. +.+.+-..+.++|+++|+.++..
T Consensus 329 VaTvraLK~hgg~~~~~l~~en~Eal~sGl~NL~RHIenvr~FGvPvVVAINKFd~-DTe~Ei~~I~~~c~e~Gv~va~~ 407 (557)
T PRK13505 329 VATVRALKMHGGVAKDDLKEENVEALKKGFANLERHIENIRKFGVPVVVAINKFVT-DTDAEIAALKELCEELGVEVALS 407 (557)
T ss_pred EeehHHHHHcCCCChhhccccCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCCCC-CCHHHHHHHHHHHHHcCCCEEEe
Confidence 34566676666432111122222 34777888888888888777666654 33333347889999999999866
Q ss_pred cCCCCc
Q 017700 254 SPLGLG 259 (367)
Q Consensus 254 ~pl~~G 259 (367)
..++.|
T Consensus 408 ~~~~~G 413 (557)
T PRK13505 408 EVWAKG 413 (557)
T ss_pred cccccC
Confidence 666655
No 216
>PRK06424 transcription factor; Provisional
Probab=27.04 E-value=1.5e+02 Score=24.69 Aligned_cols=76 Identities=12% Similarity=0.067 Sum_probs=40.2
Q ss_pred hHHHHHHHcCCeEEEe---cCCCC--ccccCCCC---CCCCCC--ChhhhhhhhhccChHHHHHHHHHHHHHhCCCHHHH
Q 017700 238 EIKNICDSLGIRLISY---SPLGL--GMLTGKYT---PSKLPR--GPRALLFRQILPGLKPLLRSLKEIAERRGKTIPQV 307 (367)
Q Consensus 238 ~l~~~~~~~gi~v~a~---~pl~~--G~L~~~~~---~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~la~~~g~t~~ql 307 (367)
.+-+.|.+.|..|..+ +|... -.-+.... ...... ..++.+|+...+-....-+.++.+-++.|+|..++
T Consensus 24 ~vC~~Ca~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~Ir~lRe~~GLSQ~eL 103 (144)
T PRK06424 24 NVCDDCAKFGTPVIEHNKFKEVKEDIKVKLPEKKIIVPTYKKAYKKYKKKASDEDLDIVEDYAELVKNARERLSMSQADL 103 (144)
T ss_pred ehhHHHHHcCCcccccCCCCcccccccccCccccccccccccCCCCccCcccHHHHHHHHHHHHHHHHHHHHcCCCHHHH
Confidence 6788899999999988 55532 11111000 000000 11122233222222334467777777889998888
Q ss_pred HHHHHH
Q 017700 308 AINWCI 313 (367)
Q Consensus 308 al~~~l 313 (367)
|-+--.
T Consensus 104 A~~iGv 109 (144)
T PRK06424 104 AAKIFE 109 (144)
T ss_pred HHHhCC
Confidence 866543
No 217
>PF13289 SIR2_2: SIR2-like domain
Probab=26.83 E-value=3.1e+02 Score=21.82 Aligned_cols=68 Identities=13% Similarity=0.058 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHcCcEeEEeecCCChHHHHHHHHHHHhcCCC--ceeEEeeecccccccchhhHHHHHHHcCCeEE
Q 017700 178 LALWNGLVAMYEKGLVRAVGVSNYGPNQLVKIHDYLTARGVP--LCSAQVQFSLLSMGENQLEIKNICDSLGIRLI 251 (367)
Q Consensus 178 ~~~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~--~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~v~ 251 (367)
...++.+..+.....+-.||.|-.+. .+..+...+...... ....-+..+ .......++.++.||.+|
T Consensus 74 ~~~~~~l~~~l~~~~~lfiGys~~D~-~i~~~l~~~~~~~~~~~~~~~~v~~~-----~~~~~~~~~~~~~~i~~I 143 (143)
T PF13289_consen 74 PWFPNFLRSLLRSKTLLFIGYSFNDP-DIRQLLRSALENSGKSRPRHYIVIPD-----PDDENEREFLEKYGIEVI 143 (143)
T ss_pred HHHHHHHHHHHcCCCEEEEEECCCCH-HHHHHHHHHHHhccCCCccEEEEEcC-----CchHHHHHHHHHcCCEEC
Confidence 34677888888888999999996544 555555444332221 112212111 222256778888898774
No 218
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=26.69 E-value=3.3e+02 Score=21.62 Aligned_cols=64 Identities=20% Similarity=0.189 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHcC--cEeEEeecCCCh-HHHHHHHHHHHhcCCCceeEEeeecccccccchhhHHHHHHHcCCeEE
Q 017700 179 ALWNGLVAMYEKG--LVRAVGVSNYGP-NQLVKIHDYLTARGVPLCSAQVQFSLLSMGENQLEIKNICDSLGIRLI 251 (367)
Q Consensus 179 ~~~~~L~~l~~~G--~ir~iGvS~~~~-~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~v~ 251 (367)
.+-+..++++++| +|.-++||.... +..+.+.+.++..+. .|..+.... . .....++..|+...
T Consensus 44 ~l~~~~~~~~~~~~~~v~~v~vs~d~~~d~~~~~~~~~~~~~~-------~~~~l~~~~-~-~~~~~~~~~g~~~~ 110 (142)
T cd02968 44 NLAQALKQLGADGGDDVQVVFISVDPERDTPEVLKAYAKAFGP-------GWIGLTGTP-E-EIEALAKAFGVYYE 110 (142)
T ss_pred HHHHHHHHhhHhhcCceEEEEEEECCCCCCHHHHHHHHHHhCC-------CcEEEECCH-H-HHHHHHHHhcEEEE
Confidence 3444455666675 899999987442 223344455544432 222222111 1 34456777776654
No 219
>PF00563 EAL: EAL domain; InterPro: IPR001633 This domain is found in diverse bacterial signalling proteins. It is called EAL after its conserved residues. The EAL domain is a good candidate for a diguanylate phosphodiesterase function []. The domain contains many conserved acidic residues that could participate in metal binding and might form the phosphodiesterase active site. It often but not always occurs along with IPR000014 from INTERPRO and IPR000160 from INTERPRO domains that are also found in many signalling proteins.; PDB: 3PJU_A 3PJX_A 3PJW_A 3PJT_B 3KZP_B 3U2E_B 3S83_A 2R6O_B 3N3T_B 3GG1_A ....
Probab=26.62 E-value=1.6e+02 Score=25.66 Aligned_cols=69 Identities=20% Similarity=0.324 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHcCcEeEEeecCCCh--HHHHHHHHHHHhcCCCceeEEeeeccccccc--c----hhhHHHHHHHcCCe
Q 017700 178 LALWNGLVAMYEKGLVRAVGVSNYGP--NQLVKIHDYLTARGVPLCSAQVQFSLLSMGE--N----QLEIKNICDSLGIR 249 (367)
Q Consensus 178 ~~~~~~L~~l~~~G~ir~iGvS~~~~--~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~--~----~~~l~~~~~~~gi~ 249 (367)
....+.++.|++.|. .+++.+++. ..+..+.. .+|+.+-+..+.+..-. . -..++..+++.|+.
T Consensus 134 ~~~~~~l~~l~~~G~--~i~ld~~g~~~~~~~~l~~------l~~~~ikld~~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 205 (236)
T PF00563_consen 134 AELLENLRRLRSLGF--RIALDDFGSGSSSLEYLAS------LPPDYIKLDGSLVRDLSDEEAQSLLQSLINLAKSLGIK 205 (236)
T ss_dssp HHHHHHHHHHHHCT---EEEEEEETSTCGCHHHHHH------HCGSEEEEEHHGHTTTTSHHHHHHHHHHHHHHHHTT-E
T ss_pred HHHHHHHHHHHhcCc--eeEeeeccCCcchhhhhhh------cccccceeecccccccchhhHHHHHHHHHHHhhccccc
Confidence 345689999999998 677777644 33455444 46788888887773211 1 13678899999999
Q ss_pred EEEec
Q 017700 250 LISYS 254 (367)
Q Consensus 250 v~a~~ 254 (367)
+++-.
T Consensus 206 via~g 210 (236)
T PF00563_consen 206 VIAEG 210 (236)
T ss_dssp EEEEC
T ss_pred cceee
Confidence 99853
No 220
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=26.56 E-value=4.9e+02 Score=23.62 Aligned_cols=93 Identities=11% Similarity=-0.049 Sum_probs=45.2
Q ss_pred HHHHHhhhCCCcEEEEEeccCCCCCCChhHHHHHHHHHHHHHcCcEeEEeecCC-ChHHHHHHHHHHHhcCCCceeEEee
Q 017700 148 CRASLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKGLVRAVGVSNY-GPNQLVKIHDYLTARGVPLCSAQVQ 226 (367)
Q Consensus 148 l~~sL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvS~~-~~~~l~~~~~~~~~~~~~~~~~q~~ 226 (367)
+-+-|+.+|.+ .+.+|..+........ -++.+.++++.-.+.-|..-+. +.+.+.++.+. . ..+.+.+-
T Consensus 160 ~~~~l~~~G~~---~iivt~i~~~g~~~g~--~~~~~~~i~~~~~ipvia~GGi~s~~di~~~~~~---g--~~dgv~~g 229 (254)
T TIGR00735 160 WAKEVEKLGAG---EILLTSMDKDGTKSGY--DLELTKAVSEAVKIPVIASGGAGKPEHFYEAFTK---G--KADAALAA 229 (254)
T ss_pred HHHHHHHcCCC---EEEEeCcCcccCCCCC--CHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHc---C--CcceeeEh
Confidence 33444566655 4555644322111111 2455666666555555544332 44556655543 2 13333332
Q ss_pred ecccccccchhhHHHHHHHcCCeE
Q 017700 227 FSLLSMGENQLEIKNICDSLGIRL 250 (367)
Q Consensus 227 ~n~~~~~~~~~~l~~~~~~~gi~v 250 (367)
--+......-.++.+.|+++|+.+
T Consensus 230 ~a~~~~~~~~~~~~~~~~~~gi~~ 253 (254)
T TIGR00735 230 SVFHYREITIGEVKEYLAERGIPV 253 (254)
T ss_pred HHHhCCCCCHHHHHHHHHHCCCcc
Confidence 222222233347889999999865
No 221
>PF07994 NAD_binding_5: Myo-inositol-1-phosphate synthase; InterPro: IPR002587 1L-myo-Inositol-1-phosphate synthase (5.5.1.4 from EC) catalyzes the conversion of D-glucose 6-phosphate to 1L-myo-inositol-1-phosphate, the first committed step in the production of all inositol-containing compounds, including phospholipids, either directly or by salvage. The enzyme exists in a cytoplasmic form in a wide range of plants, animals, and fungi. It has also been detected in several bacteria and a chloroplast form is observed in alga and higher plants. Inositol phosphates play an important role in signal transduction. In Saccharomyces cerevisiae (Baker's yeast), the transcriptional regulation of the INO1 gene has been studied in detail [] and its expression is sensitive to the availability of phospholipid precursors as well as growth phase. The regulation of the structural gene encoding 1L-myo-inositol-1-phosphate synthase has also been analyzed at the transcriptional level in the aquatic angiosperm, Spirodela polyrrhiza (Giant duckweed) and the halophyte, Mesembryanthemum crystallinum (Common ice plant) [].; GO: 0004512 inositol-3-phosphate synthase activity, 0006021 inositol biosynthetic process, 0008654 phospholipid biosynthetic process; PDB: 1GR0_A 1P1K_B 1LA2_B 1RM0_B 1P1I_B 1JKF_A 1P1F_A 1P1J_B 1JKI_B 1P1H_A ....
Probab=25.99 E-value=5.6e+02 Score=24.14 Aligned_cols=137 Identities=15% Similarity=0.190 Sum_probs=76.2
Q ss_pred hHHHHHHHHHHHhhhCCCcEEEEEeccCCCCCCCh--hHHHHHHHHHHHHHcCcEeEEeecCCChHHHHHHHHHHHhcCC
Q 017700 141 PGQFVNACRASLARLQIEQIGIGQLHWSTANYAPP--QELALWNGLVAMYEKGLVRAVGVSNYGPNQLVKIHDYLTARGV 218 (367)
Q Consensus 141 ~~~i~~~l~~sL~~Lg~d~iDl~~lH~~~~~~~~~--~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~ 218 (367)
.+.+++.+.+-+++.|+|++=++-.-. .+.+.+. .....+++|++..+++.-. ..+..+...... ..|.
T Consensus 131 ~e~~~~DI~~f~~~~~~d~vVvvn~as-TE~~~~~~~~~~~t~~~l~~al~~~~~~------~~aS~~YA~AAl--~~g~ 201 (295)
T PF07994_consen 131 VEQIREDIRDFKKENGLDRVVVVNVAS-TERYIPVIPGVHDTLEALEKALDENDPE------ISASMLYAYAAL--EAGV 201 (295)
T ss_dssp HHHHHHHHHHHHHHTT-SCEEEEE-SS-CC-S---CCCCCSSHHHHHHHHHTT-TT------HHHHHHHHHHHH--HTTE
T ss_pred HHHHHHHHHHHHHHhCCCcEEEEECCC-CCCCCCCCccccCCHHHHHHHhhcCCCc------CChHHHHHHHHH--HCCC
Confidence 466789999999999998766555442 2221111 1123578888888866522 133333322222 2233
Q ss_pred CceeEEeeecccccccchhhHHHHHHHcCCeEEEe---cCCCCccccCCCCCCCCCCChhhhhhhhhccChHHHHHHHHH
Q 017700 219 PLCSAQVQFSLLSMGENQLEIKNICDSLGIRLISY---SPLGLGMLTGKYTPSKLPRGPRALLFRQILPGLKPLLRSLKE 295 (367)
Q Consensus 219 ~~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~v~a~---~pl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 295 (367)
++ ++++|-.-.... .+.+.++++|+.+..- ++++.+++-+ +-.+.+
T Consensus 202 ~f----vN~tP~~~a~~P-~l~ela~~~gvpi~GdD~KT~lAAplvlD--------------------------Lirl~~ 250 (295)
T PF07994_consen 202 PF----VNGTPSNIADDP-ALVELAEEKGVPIAGDDGKTPLAAPLVLD--------------------------LIRLAK 250 (295)
T ss_dssp EE----EE-SSSTTTTSH-HHHHHHHHHTEEEEESSBS-HHHHHHHHH--------------------------HHHHHH
T ss_pred Ce----EeccCccccCCH-HHHHHHHHcCCCeecchHhhhhhhHHHHH--------------------------HHHHHH
Confidence 22 334443222222 7899999999998752 2223222211 257888
Q ss_pred HHHHhCCCHHHHHHHHHHcCCC
Q 017700 296 IAERRGKTIPQVAINWCICKGT 317 (367)
Q Consensus 296 la~~~g~t~~qlal~~~l~~~~ 317 (367)
+|.+.|..-.+=.++|....|.
T Consensus 251 la~r~g~~Gv~~~ls~ffK~P~ 272 (295)
T PF07994_consen 251 LALRRGMGGVQEWLSFFFKSPM 272 (295)
T ss_dssp HHHHTTS-EEHHHHHHHBSS-T
T ss_pred HHHHcCCCChhHHHHHHhcCCC
Confidence 8999988778888899888775
No 222
>PLN02321 2-isopropylmalate synthase
Probab=25.89 E-value=7.4e+02 Score=26.17 Aligned_cols=148 Identities=14% Similarity=0.101 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhCCCcEEEEE-eccCCCCCCChhHHHHHHHHHHHHHcCc---------EeEEeecCCChHHHHHHHHHHH
Q 017700 145 VNACRASLARLQIEQIGIGQ-LHWSTANYAPPQELALWNGLVAMYEKGL---------VRAVGVSNYGPNQLVKIHDYLT 214 (367)
Q Consensus 145 ~~~l~~sL~~Lg~d~iDl~~-lH~~~~~~~~~~~~~~~~~L~~l~~~G~---------ir~iGvS~~~~~~l~~~~~~~~ 214 (367)
+-.+-+.|.++|+|+|..-+ ...+.+ +++++.+.+..+ .+-.+++......++.+.+...
T Consensus 110 Kl~Ia~~L~~lGVd~IEvGfP~~Sp~D----------~e~vr~i~~~~~~~v~~~~~v~~i~a~~ra~~~dId~A~~al~ 179 (632)
T PLN02321 110 KLDIARQLAKLGVDIIEAGFPIASPDD----------LEAVKTIAKEVGNEVDEDGYVPVICGLSRCNKKDIDAAWEAVK 179 (632)
T ss_pred HHHHHHHHHHcCCCEEEEeCcCCCccH----------HHHHHHHHHhcccCCCccccceeeeeehhccHHhHHHHHHHhc
Q ss_pred hcCCCceeEEeeecccccccch-----------hhHHHHHHHcCCeEEEecCCCCccccCCCCCCCCCCChhhhhhhhhc
Q 017700 215 ARGVPLCSAQVQFSLLSMGENQ-----------LEIKNICDSLGIRLISYSPLGLGMLTGKYTPSKLPRGPRALLFRQIL 283 (367)
Q Consensus 215 ~~~~~~~~~q~~~n~~~~~~~~-----------~~l~~~~~~~gi~v~a~~pl~~G~L~~~~~~~~~~~~~~~~~~~~~~ 283 (367)
....+...+.+.-+.++....- .+.+++|+++|...+.+++--.+.-..
T Consensus 180 ~a~~~~I~i~~stSd~h~~~~l~~t~ee~l~~~~~~V~~Ak~~G~~~v~fs~EDa~rtd~-------------------- 239 (632)
T PLN02321 180 HAKRPRIHTFIATSEIHMEHKLRKTPDEVVEIARDMVKYARSLGCEDVEFSPEDAGRSDP-------------------- 239 (632)
T ss_pred CCCCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCceEEEecccCCCCCH--------------------
Q ss_pred cChHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCCeeecCCCCHHHHHHHHhcc
Q 017700 284 PGLKPLLRSLKEIAERRGKTIPQVAINWCICKGTIPIPGVKSVKQVEENLGAL 336 (367)
Q Consensus 284 ~~~~~~~~~l~~la~~~g~t~~qlal~~~l~~~~~vi~g~~~~e~l~enl~a~ 336 (367)
+.+.++++. +.=.++-.-..+--+|...|+++.+.++.+
T Consensus 240 -------d~l~~~~~~-------a~~aGa~~I~L~DTvG~~~P~~v~~li~~l 278 (632)
T PLN02321 240 -------EFLYRILGE-------VIKAGATTLNIPDTVGYTLPSEFGQLIADI 278 (632)
T ss_pred -------HHHHHHHHH-------HHHcCCCEEEecccccCCCHHHHHHHHHHH
No 223
>PTZ00081 enolase; Provisional
Probab=25.88 E-value=6.8e+02 Score=25.06 Aligned_cols=98 Identities=12% Similarity=0.131 Sum_probs=61.2
Q ss_pred CChHHHHHHHHHHHhhhCCCcEEEEEeccCCCCCCChhHHHHHHHHHHHHHcC--cEeEEee--cCCChHHHHHHHHHHH
Q 017700 139 LTPGQFVNACRASLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKG--LVRAVGV--SNYGPNQLVKIHDYLT 214 (367)
Q Consensus 139 ~~~~~i~~~l~~sL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~~~~L~~l~~~G--~ir~iGv--S~~~~~~l~~~~~~~~ 214 (367)
.+.+++.+-+.+.++.++ +++|-.|-. .+ -|+.+.+|.++- .+.-+|= +..+...+...++.
T Consensus 281 ~s~~eli~~~~~~l~~y~-----I~~IEDPl~----~~---D~eg~~~Lt~~lg~~i~IvgDE~~~tn~~~l~~~I~~-- 346 (439)
T PTZ00081 281 LTGEELVELYLDLVKKYP-----IVSIEDPFD----QD---DWEAYAKLTAAIGQKVQIVGDDLLVTNPTRIKKAIEK-- 346 (439)
T ss_pred cCHHHHHHHHHHHHhcCC-----cEEEEcCCC----cc---cHHHHHHHHHhhCCCceEEcCCcccCCHHHHHHHHHh--
Confidence 378888888888888775 455554421 11 256666666653 4544442 23456777766664
Q ss_pred hcCCCceeEEeeecccccccchhhHHHHHHHcCCeEEEe
Q 017700 215 ARGVPLCSAQVQFSLLSMGENQLEIKNICDSLGIRLISY 253 (367)
Q Consensus 215 ~~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~v~a~ 253 (367)
-..+++|+..|-+---.+-.++...|+.+|+.++..
T Consensus 347 ---~aad~i~iKvnqiGGITe~l~~a~lA~~~Gi~~iis 382 (439)
T PTZ00081 347 ---KACNALLLKVNQIGTVTEAIEAAKLAQKNGWGVMVS 382 (439)
T ss_pred ---CCCCEEEeccccccCHHHHHHHHHHHHHcCCcEEEe
Confidence 346677777775432223347899999999998763
No 224
>cd03327 MR_like_2 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 2. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=25.81 E-value=2.8e+02 Score=26.45 Aligned_cols=69 Identities=9% Similarity=0.135 Sum_probs=47.4
Q ss_pred HHHHHHHHHcCcEe-EEeecCCChHHHHHHHHHHHhcCCCceeEEeeecccccccchhhHHHHHHHcCCeEEEec
Q 017700 181 WNGLVAMYEKGLVR-AVGVSNYGPNQLVKIHDYLTARGVPLCSAQVQFSLLSMGENQLEIKNICDSLGIRLISYS 254 (367)
Q Consensus 181 ~~~L~~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~v~a~~ 254 (367)
++.+.+|+++..|. ..|=+.++...+..+++. -.++++|+..+..---.+-.++...|+.+|+.++.+.
T Consensus 211 ~~~~~~l~~~~~~pIa~gE~~~~~~~~~~~i~~-----~a~d~i~~d~~~~GGit~~~~i~~~A~~~g~~~~~h~ 280 (341)
T cd03327 211 IEGYAELKKATGIPISTGEHEYTVYGFKRLLEG-----RAVDILQPDVNWVGGITELKKIAALAEAYGVPVVPHA 280 (341)
T ss_pred HHHHHHHHhcCCCCeEeccCccCHHHHHHHHHc-----CCCCEEecCccccCCHHHHHHHHHHHHHcCCeecccc
Confidence 57788888877665 556566777777777664 3477788776654221222478999999999987653
No 225
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=25.78 E-value=4.3e+02 Score=26.22 Aligned_cols=122 Identities=16% Similarity=0.173 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHcCcEeEEeecCCChHHHHHHHHHHHhcCCCceeEEeeecccccccchhhHHHHHHHcC--CeEEEecC
Q 017700 178 LALWNGLVAMYEKGLVRAVGVSNYGPNQLVKIHDYLTARGVPLCSAQVQFSLLSMGENQLEIKNICDSLG--IRLISYSP 255 (367)
Q Consensus 178 ~~~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~~g--i~v~a~~p 255 (367)
--+++++.+..++++ ++...+.+.+-..++.--..|++|..+ +..+. . +.++.+++.+ +++++.
T Consensus 121 VPiYqa~~~~~~k~~----~~~~mt~d~~~~~ie~qa~~GVDfmTi--HcGi~-----~-~~~~~~~~~~R~~giVSR-- 186 (431)
T PRK13352 121 VPIYQAAVEAARKYG----SVVDMTEDDLFDVIEKQAKDGVDFMTI--HCGVT-----R-ETLERLKKSGRIMGIVSR-- 186 (431)
T ss_pred hhHHHHHHHHHhcCC----ChhhCCHHHHHHHHHHHHHhCCCEEEE--ccchh-----H-HHHHHHHhcCCccCeecC--
Confidence 347888888866555 677778887655544433345555544 33321 2 6677777644 444442
Q ss_pred CCCccccCCCCCCCCCCChhhhhhhhhccChHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCC--eeecCCCCHHHHHHHH
Q 017700 256 LGLGMLTGKYTPSKLPRGPRALLFRQILPGLKPLLRSLKEIAERRGKTIPQVAINWCICKGT--IPIPGVKSVKQVEENL 333 (367)
Q Consensus 256 l~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~g~t~~qlal~~~l~~~~--~vi~g~~~~e~l~enl 333 (367)
++.++....... ..+ ..+-+-.+.+-+|+++|.+|.. |..+. -.|.-+++..|+.|.+
T Consensus 187 -GGs~~~~WM~~n-~~E-----------NPlye~fD~lLeI~~~yDVtlS-------LGDglRPG~i~Da~D~aQi~El~ 246 (431)
T PRK13352 187 -GGSFLAAWMLHN-NKE-----------NPLYEHFDYLLEILKEYDVTLS-------LGDGLRPGCIADATDRAQIQELI 246 (431)
T ss_pred -CHHHHHHHHHHc-CCc-----------CchHHHHHHHHHHHHHhCeeee-------ccCCcCCCccccCCcHHHHHHHH
Confidence 333333210000 001 1122334788889999987642 22222 4566677777777765
No 226
>COG0820 Predicted Fe-S-cluster redox enzyme [General function prediction only]
Probab=25.52 E-value=3.6e+02 Score=26.08 Aligned_cols=96 Identities=15% Similarity=0.127 Sum_probs=60.7
Q ss_pred EEEeccCCCCC--------CChhHHHHHHHHHHHHHcCcEeEEee-------cCCChHHHHHHHHHHHhcCCCceeEEee
Q 017700 162 IGQLHWSTANY--------APPQELALWNGLVAMYEKGLVRAVGV-------SNYGPNQLVKIHDYLTARGVPLCSAQVQ 226 (367)
Q Consensus 162 l~~lH~~~~~~--------~~~~~~~~~~~L~~l~~~G~ir~iGv-------S~~~~~~l~~~~~~~~~~~~~~~~~q~~ 226 (367)
-+.||.+++.. .....++++++.+...+... +.|=+ -|.+.++..++.+.++ +++..++-++
T Consensus 215 AiSLHa~nd~lR~~L~Pink~~~~e~l~~a~r~Y~~~t~-~rVt~EY~Ll~~VND~~e~A~~L~~ll~--~~~~~VNLIP 291 (349)
T COG0820 215 AISLHAPNDELRDQLMPINKKYPIEELLEAIRYYPEKSG-RRVTFEYVLLDGVNDSLEHAKELAKLLK--GIPCKVNLIP 291 (349)
T ss_pred EEecCCCCHHHHhhhhccccCCCHHHHHHHHHhhhhccC-ceEEEEeeecccccCCHHHHHHHHHHhc--CCCceEEEee
Confidence 46799886421 11134567788877776544 44333 2445677777777654 3556899999
Q ss_pred ecccccccch-------hhHHHHHHHcCCeEEEecCCCCcc
Q 017700 227 FSLLSMGENQ-------LEIKNICDSLGIRLISYSPLGLGM 260 (367)
Q Consensus 227 ~n~~~~~~~~-------~~l~~~~~~~gi~v~a~~pl~~G~ 260 (367)
||+..-.... ..+.+...++||.+.....-+..+
T Consensus 292 ~Np~~~~~y~r~~~~~i~~F~~~L~~~gv~~tvR~~~g~DI 332 (349)
T COG0820 292 YNPVPGSDYERSSKERIRKFLKILKKAGVLVTVRKTRGDDI 332 (349)
T ss_pred cCCCCCCCccCCcHHHHHHHHHHHHhCCeeEEecccccccc
Confidence 9998644411 245666777889998877766543
No 227
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=25.49 E-value=84 Score=25.16 Aligned_cols=42 Identities=12% Similarity=0.074 Sum_probs=37.4
Q ss_pred CCHHHHHHHHHHHHHCCCCEEeCCCCcCCCCCCChHHHHHHHHHhhCC
Q 017700 70 SMDSQLQQTFNLAVENGINLFDTADSYGTGRLNGKSEKLLGKFISEIP 117 (367)
Q Consensus 70 ~~~~~a~~~l~~A~~~Gi~~~DTA~~Yg~~~~~g~sE~~lG~al~~~~ 117 (367)
.+.+.-.+++...++.|.+.-+.|..||- ++..|..|++.+.
T Consensus 13 ys~EfK~~aV~~~~~~g~sv~evA~e~gI------s~~tl~~W~r~y~ 54 (121)
T PRK09413 13 RTTQEKIAIVQQSFEPGMTVSLVARQHGV------AASQLFLWRKQYQ 54 (121)
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCc------CHHHHHHHHHHHh
Confidence 45677888999999999999999999988 9999999999863
No 228
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=25.34 E-value=2e+02 Score=28.37 Aligned_cols=74 Identities=8% Similarity=-0.033 Sum_probs=59.1
Q ss_pred HHHHHHHHHHcCcEeEEeecCCChHHHHHHHHHHHhcCCCceeEEeeecccccccchhhHHHHHHHcCCeEEEecCCCCc
Q 017700 180 LWNGLVAMYEKGLVRAVGVSNYGPNQLVKIHDYLTARGVPLCSAQVQFSLLSMGENQLEIKNICDSLGIRLISYSPLGLG 259 (367)
Q Consensus 180 ~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~v~a~~pl~~G 259 (367)
.-..+..|.++|.--..|+.+-+....+.+... .-..+.+-+|+++.....+ +.....++.++.|.+-.|++.+
T Consensus 279 ~~~~~~~L~~~g~~v~~g~l~~~d~d~~~a~~l-----~~~~~~~~pf~~i~~~~~~-~a~~~~~~~~~vi~~~~~~g~~ 352 (402)
T PRK09536 279 AARAVSRLVAAGASVSVGPVPEGDTAAETAARV-----GCEAVTVPPFKPIEDSTRA-EATDLIIAADAVVAAGVAAAAR 352 (402)
T ss_pred HHHHHHHHHHCCCeEEEecCcCcchhHHHHHHc-----CCCEEeeCCCCCCCHHHHH-HHHHHHHhCCEEEECCCccCCC
Confidence 457889999999999999999877666655544 2345678899999877666 7888999999999998898765
No 229
>PF02426 MIase: Muconolactone delta-isomerase; InterPro: IPR003464 This small enzyme forms a homodecameric complex, that catalyses the third step in the catabolism of catechol to succinate- and acetyl-coa in the beta-ketoadipate pathway (5.3.3.4 from EC). The protein has a ferredoxin-like fold according to SCOP.; GO: 0006725 cellular aromatic compound metabolic process
Probab=25.24 E-value=1.3e+02 Score=22.99 Aligned_cols=51 Identities=16% Similarity=0.219 Sum_probs=31.0
Q ss_pred HHHHHHHHHcCcEeEEe--------ecCCChHHHHHHHHHHHhcCCC-ceeEEeeecccccc
Q 017700 181 WNGLVAMYEKGLVRAVG--------VSNYGPNQLVKIHDYLTARGVP-LCSAQVQFSLLSMG 233 (367)
Q Consensus 181 ~~~L~~l~~~G~ir~iG--------vS~~~~~~l~~~~~~~~~~~~~-~~~~q~~~n~~~~~ 233 (367)
.+...+|+++|+++++. +|-|+.+.-+++.+...+ .| +.+..+...++.+-
T Consensus 28 ~~~a~eLq~~G~~~~lWr~~G~~~n~~Ifdv~d~~eLh~lL~s--LPL~p~m~i~VtpL~~H 87 (91)
T PF02426_consen 28 KARAQELQRQGKWRHLWRVVGRYANVSIFDVEDNDELHELLSS--LPLFPYMDIEVTPLARH 87 (91)
T ss_pred HHHHHHHHHCCeeeEEEEecCCcceEEEEECCCHHHHHHHHHh--CCCccceeeeEEecccC
Confidence 35668999999999865 333444444555555433 34 45566666666543
No 230
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=25.22 E-value=6.1e+02 Score=24.28 Aligned_cols=60 Identities=17% Similarity=0.206 Sum_probs=37.5
Q ss_pred ChHHHHHHHHHHHhhhCCCcEEEEEeccCCCCCCCh--------hHHHH-HHHHHHHHHcCcEeEEeecCCCh
Q 017700 140 TPGQFVNACRASLARLQIEQIGIGQLHWSTANYAPP--------QELAL-WNGLVAMYEKGLVRAVGVSNYGP 203 (367)
Q Consensus 140 ~~~~i~~~l~~sL~~Lg~d~iDl~~lH~~~~~~~~~--------~~~~~-~~~L~~l~~~G~ir~iGvS~~~~ 203 (367)
+.+.+++.++..+ .|+.+++.++.|.-- ..++. ..++. ..+.+.|.+.|. ..+++|||..
T Consensus 163 t~~~~~~~l~~~~-~l~~~~is~y~L~~~--~gT~l~~~~~~~~~~~~~~~~~~~~l~~~Gy-~~yeis~fa~ 231 (350)
T PRK08446 163 NKKLLKEELKLAK-ELPINHLSAYSLTIE--ENTPFFEKNHKKKDDENLAKFFIEQLEELGF-KQYEISNFGK 231 (350)
T ss_pred CHHHHHHHHHHHH-hcCCCEEEeccceec--CCChhHHhhhcCCCHHHHHHHHHHHHHHCCC-cEEEeehhhC
Confidence 7888888887654 599999999887731 11111 11222 334556666775 4677877754
No 231
>PRK12558 glutamyl-tRNA synthetase; Provisional
Probab=25.20 E-value=6.6e+02 Score=25.27 Aligned_cols=67 Identities=13% Similarity=0.053 Sum_probs=44.5
Q ss_pred ChHHHHHHHHHHHhhhCCCcEEEEEeccCCCCCCChhHHHHHHHHHHHHHcCcEeEEeecCCChHHHHHHHHHHHhcC
Q 017700 140 TPGQFVNACRASLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKGLVRAVGVSNYGPNQLVKIHDYLTARG 217 (367)
Q Consensus 140 ~~~~i~~~l~~sL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~ 217 (367)
+.+...+.+.+.|+.||+++ |-++ ......+..-+.+++|+++|++ |. +..+.++++...+.+...+
T Consensus 49 s~~~~~~~I~e~L~wLGI~~-De~y-------~QSer~~~y~~~~e~L~e~G~A-Y~--C~Ct~eel~~~r~~~~~~~ 115 (445)
T PRK12558 49 SKQEYADAIAEDLKWLGINW-DRTF-------RQSDRFDRYDEAAEKLKAAGRL-YP--CYETPEELELKRKIQLSRG 115 (445)
T ss_pred chHHHHHHHHHHHHHcCCCC-Cccc-------cHHHHHHHHHHHHHHHHHCCCE-EE--ecCchHHHHHHHHHHHhCC
Confidence 66889999999999999863 5321 1111223456889999999995 33 3346677777666544444
No 232
>cd03323 D-glucarate_dehydratase D-Glucarate dehydratase (GlucD) catalyzes the dehydration of both D-glucarate and L-idarate to form 5-keto-4-deoxy-D-glucarate (5-KDG) , the initial reaction of the catabolic pathway for (D)-glucarate. GlucD belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=25.19 E-value=2e+02 Score=28.32 Aligned_cols=71 Identities=10% Similarity=0.062 Sum_probs=47.3
Q ss_pred HHHHHHHHHcCcEe-EEeecCCChHHHHHHHHHHHhcCCCceeEEeeecccccccchhhHHHHHHHcCCeEEEecCC
Q 017700 181 WNGLVAMYEKGLVR-AVGVSNYGPNQLVKIHDYLTARGVPLCSAQVQFSLLSMGENQLEIKNICDSLGIRLISYSPL 256 (367)
Q Consensus 181 ~~~L~~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~v~a~~pl 256 (367)
++.+.+|++...+- ..|=|.++..++..+++. .-++++|......---..-.++...|+.+|+.+..++..
T Consensus 250 ~~~~~~L~~~~~~PIa~dEs~~~~~~~~~~i~~-----~avdil~~d~~~~GGit~~~kia~~A~~~gi~~~~h~~~ 321 (395)
T cd03323 250 REGMAEFRRATGLPLATNMIVTDFRQLGHAIQL-----NAVDIPLADHHFWGGMRGSVRVAQVCETWGLGWGMHSNN 321 (395)
T ss_pred HHHHHHHHHhcCCCEEcCCcccCHHHHHHHHHc-----CCCcEEeeccccccCHHHHHHHHHHHHHcCCeEEEecCc
Confidence 57777788776554 556566666666666653 346777777654421122247899999999999887765
No 233
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=25.18 E-value=5.2e+02 Score=23.48 Aligned_cols=166 Identities=12% Similarity=0.082 Sum_probs=80.7
Q ss_pred CCHHHHHHHHHHHHHCCCCEEeCCCCcCCCCCCChHH-HHHHHHHhhCCCCCCCCCcEEEEeeccCCCCCCChHHHHHHH
Q 017700 70 SMDSQLQQTFNLAVENGINLFDTADSYGTGRLNGKSE-KLLGKFISEIPGQKQVQNNIVIATKFAAYPWRLTPGQFVNAC 148 (367)
Q Consensus 70 ~~~~~a~~~l~~A~~~Gi~~~DTA~~Yg~~~~~g~sE-~~lG~al~~~~~~~~~R~~v~i~tK~~~~~~~~~~~~i~~~l 148 (367)
.+.++..++++.-.+.|+..+++.-.. . +..+ +.+.+..+. ... ..+..=. +...+.+++++
T Consensus 17 ~~~~~k~~i~~~L~~~Gv~~iE~g~p~-~----~~~~~e~~~~l~~~-----~~~--~~~~~~~-----r~~~~~v~~a~ 79 (259)
T cd07939 17 FSREEKLAIARALDEAGVDEIEVGIPA-M----GEEEREAIRAIVAL-----GLP--ARLIVWC-----RAVKEDIEAAL 79 (259)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCC-C----CHHHHHHHHHHHhc-----CCC--CEEEEec-----cCCHHHHHHHH
Confidence 567899999999999999999996221 1 3344 444444332 111 1121111 11345554433
Q ss_pred HHHHhhhCCCcEEEEEeccCCC-----CCC-ChhHHHHHHHHHHHHHcCcEeEEeecCC---ChHHHHHHHHHHHhcCCC
Q 017700 149 RASLARLQIEQIGIGQLHWSTA-----NYA-PPQELALWNGLVAMYEKGLVRAVGVSNY---GPNQLVKIHDYLTARGVP 219 (367)
Q Consensus 149 ~~sL~~Lg~d~iDl~~lH~~~~-----~~~-~~~~~~~~~~L~~l~~~G~ir~iGvS~~---~~~~l~~~~~~~~~~~~~ 219 (367)
..|.+.+-++.=-++.. ..+ ....+.+.+.++..++.|.--.+++... +++.+.++.+.+...|
T Consensus 80 -----~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G-- 152 (259)
T cd07939 80 -----RCGVTAVHISIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVSVGAEDASRADPDFLIEFAEVAQEAG-- 152 (259)
T ss_pred -----hCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEeeccCCCCCHHHHHHHHHHHHHCC--
Confidence 34777776665221100 000 0112345577788888887545555443 3444555554444333
Q ss_pred ceeEEeeecccccccch-hhHHHHHHHc---CCeEEEecCCCCc
Q 017700 220 LCSAQVQFSLLSMGENQ-LEIKNICDSL---GIRLISYSPLGLG 259 (367)
Q Consensus 220 ~~~~q~~~n~~~~~~~~-~~l~~~~~~~---gi~v~a~~pl~~G 259 (367)
++.+.+.=+.-.-.+.+ .+++...+++ .+++..+.-++.+
T Consensus 153 ~~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~l~~H~Hn~~Gla 196 (259)
T cd07939 153 ADRLRFADTVGILDPFTTYELIRRLRAATDLPLEFHAHNDLGLA 196 (259)
T ss_pred CCEEEeCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEecCCCChH
Confidence 23332222222112221 2455555543 3555566555544
No 234
>PRK14477 bifunctional nitrogenase molybdenum-cofactor biosynthesis protein NifE/NifN; Provisional
Probab=25.05 E-value=3.8e+02 Score=29.67 Aligned_cols=117 Identities=12% Similarity=0.015 Sum_probs=62.1
Q ss_pred CCCcCCCCCCChHHHHHHHHHhhCCCCCCCCCcEEEEeeccCCCCCCChHHHHHHHHHHHhhh-CCCcEEEEEeccCCCC
Q 017700 93 ADSYGTGRLNGKSEKLLGKFISEIPGQKQVQNNIVIATKFAAYPWRLTPGQFVNACRASLARL-QIEQIGIGQLHWSTAN 171 (367)
Q Consensus 93 A~~Yg~~~~~g~sE~~lG~al~~~~~~~~~R~~v~i~tK~~~~~~~~~~~~i~~~l~~sL~~L-g~d~iDl~~lH~~~~~ 171 (367)
...||. |+-|-++|+..-+ ....+=|+|.|-+.+. .--++|..-+++.-++. ....+.++.++.|+..
T Consensus 550 ~~VfGG-------~~~L~~~I~~~~~-~~~p~~I~V~tTc~~e---iIGDDi~~vi~~~~~~~~~~~~~pvi~v~tpgF~ 618 (917)
T PRK14477 550 TAIFGG-------WENLKQGILRVIE-KFKPKVIGVMTTGLTE---TMGDDVRSAIVQFREEHPELDDVPVVWASTPDYC 618 (917)
T ss_pred ceEECc-------HHHHHHHHHHHHH-hcCCCEEEEECCchHh---hhhcCHHHHHHHHHhhccccCCCeEEEeeCCCCc
Confidence 346775 6666666655211 0123446677766321 11223333333322221 1124689999988533
Q ss_pred CCChhHHHHHHHHHHHH---------HcCcEeEEeecCCChHHHHHHHHHHHhcCCCcee
Q 017700 172 YAPPQELALWNGLVAMY---------EKGLVRAVGVSNYGPNQLVKIHDYLTARGVPLCS 222 (367)
Q Consensus 172 ~~~~~~~~~~~~L~~l~---------~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~~ 222 (367)
. ....+...+++.+. ..++|.=||-++..+..++++.+.++..|+.+.+
T Consensus 619 G--s~~~G~~~a~~aiv~~~~~~~~~~~~~VNli~~~~~~~gD~~eik~lL~~~Gl~v~~ 676 (917)
T PRK14477 619 G--SLQEGYAAAVEAIVATLPEPGERIPGQVNILPGAHLTPADVEEIKEIVEAFGLDPVV 676 (917)
T ss_pred c--CHHHHHHHHHHHHHHHhccccCCCCCcEEEeCCCCCChhhHHHHHHHHHHcCCceEE
Confidence 2 22233333333332 3567888887776677888888888888876533
No 235
>PRK08776 cystathionine gamma-synthase; Provisional
Probab=25.02 E-value=2.9e+02 Score=27.19 Aligned_cols=13 Identities=0% Similarity=-0.174 Sum_probs=7.6
Q ss_pred HHHHHHHHHcCCC
Q 017700 305 PQVAINWCICKGT 317 (367)
Q Consensus 305 ~qlal~~~l~~~~ 317 (367)
++....|+-+++.
T Consensus 267 a~~la~~L~~~p~ 279 (405)
T PRK08776 267 ADAIAALLDGHAA 279 (405)
T ss_pred HHHHHHHHHcCCC
Confidence 4445566666665
No 236
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=24.88 E-value=4.7e+02 Score=23.27 Aligned_cols=52 Identities=12% Similarity=0.098 Sum_probs=36.7
Q ss_pred CCHHHHHHHHHHHHHCCCCEEeCCCCcCCCCCCChHHHHHHHHHhhCCCCCCCCCcEEEEeec
Q 017700 70 SMDSQLQQTFNLAVENGINLFDTADSYGTGRLNGKSEKLLGKFISEIPGQKQVQNNIVIATKF 132 (367)
Q Consensus 70 ~~~~~a~~~l~~A~~~Gi~~~DTA~~Yg~~~~~g~sE~~lG~al~~~~~~~~~R~~v~i~tK~ 132 (367)
.+.+++.++.+..++.|++.++..-.... +.+.+.+.-+.++ +--|-.-|+.
T Consensus 24 ~~~~~a~~i~~al~~~Gi~~iEitl~~~~------~~~~I~~l~~~~p-----~~~IGAGTVl 75 (212)
T PRK05718 24 NKLEDAVPLAKALVAGGLPVLEVTLRTPA------ALEAIRLIAKEVP-----EALIGAGTVL 75 (212)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCcc------HHHHHHHHHHHCC-----CCEEEEeecc
Confidence 45689999999999999999998744333 6777766655543 2234455665
No 237
>PRK01313 rnpA ribonuclease P; Reviewed
Probab=24.81 E-value=3.2e+02 Score=22.33 Aligned_cols=63 Identities=8% Similarity=-0.078 Sum_probs=41.0
Q ss_pred CCCcEEEEeeccCCCCCCChHHHHHHHHHHHhhhCC----CcEEEEEeccCCCCCCChhHHHHHHHHHHHHH
Q 017700 122 VQNNIVIATKFAAYPWRLTPGQFVNACRASLARLQI----EQIGIGQLHWSTANYAPPQELALWNGLVAMYE 189 (367)
Q Consensus 122 ~R~~v~i~tK~~~~~~~~~~~~i~~~l~~sL~~Lg~----d~iDl~~lH~~~~~~~~~~~~~~~~~L~~l~~ 189 (367)
.|=-+.|+-|+|.. .....|++-+.++++.+.. ...|++++-.+... .....++.+.|+.+.+
T Consensus 47 ~RvG~~VSKKvG~A---V~RNRiKR~lRE~fR~~~~~~~~~g~DiVivar~~~~--~~~~~~l~~~L~~~l~ 113 (129)
T PRK01313 47 PRVGFTVTKKNGNA---VERNRIRRRLKEAVRLHAGFDMAPGTDYVIVARRDAL--NAPFSQLTEELSRRIE 113 (129)
T ss_pred cEEEEEEecccCcc---hHHHHHHHHHHHHHHHhchhccCCCceEEEEECcccc--cCCHHHHHHHHHHHHH
Confidence 34457777787643 2577888888888887653 56899999987432 2233445566655544
No 238
>TIGR02932 vnfK_nitrog V-containing nitrogenase, beta subunit. Nitrogenase is the enzyme of biological nitrogen fixation. The most wide-spread and most efficient nitrogenase contains a molybdenum cofactor. This protein family, VnfK, represents the beta subunit of the vanadium (V)-containing alternative nitrogenase. It is homologous to NifK and AnfK, of the molybdenum-containing and the iron (Fe)-only types, respectively.
Probab=24.74 E-value=7.2e+02 Score=24.95 Aligned_cols=119 Identities=13% Similarity=0.125 Sum_probs=60.3
Q ss_pred CCCCcCCCCCCChHHHHHHHHHhhCCCCCCC-CCcEEEEeeccCCCCCCChHHHHHHHHHHHhhhCCC----cEEEEEec
Q 017700 92 TADSYGTGRLNGKSEKLLGKFISEIPGQKQV-QNNIVIATKFAAYPWRLTPGQFVNACRASLARLQIE----QIGIGQLH 166 (367)
Q Consensus 92 TA~~Yg~~~~~g~sE~~lG~al~~~~~~~~~-R~~v~i~tK~~~~~~~~~~~~i~~~l~~sL~~Lg~d----~iDl~~lH 166 (367)
..-.||. |+-|-++|+..-+. .+ .+=|+|.|-+.+. .--++|..-+++.-++|.-+ .+.++.+|
T Consensus 67 ~dvVfGG-------~~kL~~aI~~~~~~-~~~p~~I~V~ttC~~e---iIGDDi~~v~~~~~~~~~~e~~~~~~~vv~v~ 135 (457)
T TIGR02932 67 ESAVFGG-------AKRIEEGVLTLARR-YPNLRVIPIITTCSTE---TIGDDIEGSIRKVNRALKKEFPDRKIKLVPVH 135 (457)
T ss_pred CceEECc-------HHHHHHHHHHHHHh-CCCCCEEEEECCchHH---hhcCCHHHHHHHHHhhhhhhcCCCCCeEEEee
Confidence 3457886 77777777664210 11 2236676666421 12233444333322222111 46889999
Q ss_pred cCCCCCCCh-hHHHHHHHHH-HHH-----HcCcEeEEeecCCChHHHHHHHHHHHhcCCCcee
Q 017700 167 WSTANYAPP-QELALWNGLV-AMY-----EKGLVRAVGVSNYGPNQLVKIHDYLTARGVPLCS 222 (367)
Q Consensus 167 ~~~~~~~~~-~~~~~~~~L~-~l~-----~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~~ 222 (367)
.|+...... ..+.++++|- .+. .+++|.=||-.+ ++..++++.+..+..|+.+.+
T Consensus 136 tpgF~gs~~~G~~~a~~ali~~~~~~~~~~~~~VNii~~~~-~~gD~~eik~lL~~~Gl~vn~ 197 (457)
T TIGR02932 136 TPSFKGSQVTGYAECVKSVIKTIAAKKGEPSGKLNVFPGWV-NPGDVVLLKHYFSEMGVDANI 197 (457)
T ss_pred CCCCcCcHHHHHHHHHHHHHHHHhhccCCCCCcEEEECCCC-ChHHHHHHHHHHHHcCCCEEE
Confidence 885432211 2223343333 221 246688886433 356677777777777765433
No 239
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=24.71 E-value=6.6e+02 Score=24.47 Aligned_cols=141 Identities=13% Similarity=0.075 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhCCCcEEEEEeccCCCCCCChhHHHHHHHHHHHHHcCc-EeEEeecCCChHHHHHHHHHHHhcCCCceeE
Q 017700 145 VNACRASLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKGL-VRAVGVSNYGPNQLVKIHDYLTARGVPLCSA 223 (367)
Q Consensus 145 ~~~l~~sL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~~~~L~~l~~~G~-ir~iGvS~~~~~~l~~~~~~~~~~~~~~~~~ 223 (367)
+..+-+.|.++|+++|++- .|...+.-++.++.+.+.|. .+.++++-.....++.+.+ ..++.+
T Consensus 28 k~~ia~~L~~~GV~~IE~G---------~p~~~~~~~e~i~~i~~~~~~~~i~~~~r~~~~di~~a~~------~g~~~i 92 (378)
T PRK11858 28 KLAIARMLDEIGVDQIEAG---------FPAVSEDEKEAIKAIAKLGLNASILALNRAVKSDIDASID------CGVDAV 92 (378)
T ss_pred HHHHHHHHHHhCCCEEEEe---------CCCcChHHHHHHHHHHhcCCCeEEEEEcccCHHHHHHHHh------CCcCEE
Q ss_pred Eeeeccccc--------------ccchhhHHHHHHHcCCeEEEecCCCCccccCCCCCCCCCCChhhhhhhhhccChHHH
Q 017700 224 QVQFSLLSM--------------GENQLEIKNICDSLGIRLISYSPLGLGMLTGKYTPSKLPRGPRALLFRQILPGLKPL 289 (367)
Q Consensus 224 q~~~n~~~~--------------~~~~~~l~~~~~~~gi~v~a~~pl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (367)
.+-+..-+. ..-. +.++++++.|+.|....+.+. ....+.
T Consensus 93 ~i~~~~Sd~h~~~~~~~s~~~~l~~~~-~~v~~a~~~G~~v~~~~ed~~-------------------------r~~~~~ 146 (378)
T PRK11858 93 HIFIATSDIHIKHKLKKTREEVLERMV-EAVEYAKDHGLYVSFSAEDAS-------------------------RTDLDF 146 (378)
T ss_pred EEEEcCCHHHHHHHhCCCHHHHHHHHH-HHHHHHHHCCCeEEEEeccCC-------------------------CCCHHH
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcCCCeeecCCCCHHHHHHHHhcc
Q 017700 290 LRSLKEIAERRGKTIPQVAINWCICKGTIPIPGVKSVKQVEENLGAL 336 (367)
Q Consensus 290 ~~~l~~la~~~g~t~~qlal~~~l~~~~~vi~g~~~~e~l~enl~a~ 336 (367)
+..+-+.+.+.|.+. +....++ |.-+|+++.+.++.+
T Consensus 147 l~~~~~~~~~~Ga~~--------I~l~DT~--G~~~P~~v~~lv~~l 183 (378)
T PRK11858 147 LIEFAKAAEEAGADR--------VRFCDTV--GILDPFTMYELVKEL 183 (378)
T ss_pred HHHHHHHHHhCCCCE--------EEEeccC--CCCCHHHHHHHHHHH
No 240
>PRK14455 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=24.58 E-value=6.1e+02 Score=24.54 Aligned_cols=95 Identities=12% Similarity=0.083 Sum_probs=61.7
Q ss_pred EEeccCCCCC----CC----hhHHHHHHHHHHHHHcC-c---EeEEeec--CCChHHHHHHHHHHHhcCCCceeEEeeec
Q 017700 163 GQLHWSTANY----AP----PQELALWNGLVAMYEKG-L---VRAVGVS--NYGPNQLVKIHDYLTARGVPLCSAQVQFS 228 (367)
Q Consensus 163 ~~lH~~~~~~----~~----~~~~~~~~~L~~l~~~G-~---ir~iGvS--~~~~~~l~~~~~~~~~~~~~~~~~q~~~n 228 (367)
+-||.+++.. .+ ...+.++++++++.+++ + |+++=+. |.+.++++.+.+.++. .+..++-++||
T Consensus 223 iSL~a~~~e~r~~l~pi~~~~~l~~Il~~l~~~~~~~~~~v~iey~lI~gvNDs~ed~~~La~ll~~--l~~~VnLIPyn 300 (356)
T PRK14455 223 ISLHAPNNELRSSLMPINRAYPLEKLMEAIEYYIEKTNRRVTFEYILLGGVNDQVEHAEELADLLKG--IKCHVNLIPVN 300 (356)
T ss_pred eccCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHhcCCeEEEEEEEeCCCCCCHHHHHHHHHHHhc--CCCcEEEEecC
Confidence 6688775421 11 13467899999887744 2 4556444 4455788888888764 34667888999
Q ss_pred ccccc----cch---hhHHHHHHHcCCeEEEecCCCCc
Q 017700 229 LLSMG----ENQ---LEIKNICDSLGIRLISYSPLGLG 259 (367)
Q Consensus 229 ~~~~~----~~~---~~l~~~~~~~gi~v~a~~pl~~G 259 (367)
++... +.. ..+.+.++++|+.+......|..
T Consensus 301 p~~~~ky~~ps~e~l~~f~~~L~~~gi~v~ir~~~g~d 338 (356)
T PRK14455 301 PVPERDYVRTPKEDIFAFEDTLKKNGVNCTIRREHGTD 338 (356)
T ss_pred cCCCCCCcCCCHHHHHHHHHHHHHCCCcEEEeCCCCcc
Confidence 87532 111 34567788999999887766654
No 241
>PRK15108 biotin synthase; Provisional
Probab=24.56 E-value=6.3e+02 Score=24.23 Aligned_cols=111 Identities=14% Similarity=0.205 Sum_probs=58.3
Q ss_pred CChHHHHHHHHHHHhhhCCCcEEEEEeccCCCCCCChhHHHHHHHHHHHHHcCcEeEEeecC--CChHHHHHHHHHHHhc
Q 017700 139 LTPGQFVNACRASLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKGLVRAVGVSN--YGPNQLVKIHDYLTAR 216 (367)
Q Consensus 139 ~~~~~i~~~l~~sL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvS~--~~~~~l~~~~~~~~~~ 216 (367)
.++++|.+.+.. ...+|...+-+ ...+..+. ....+.+.+.++.+|+.|. .+.+|+ .+.+.+.++.+.
T Consensus 76 ls~eEI~~~a~~-~~~~G~~~i~i-~~~g~~p~--~~~~e~i~~~i~~ik~~~i--~v~~s~G~ls~e~l~~LkeA---- 145 (345)
T PRK15108 76 MEVEQVLESARK-AKAAGSTRFCM-GAAWKNPH--ERDMPYLEQMVQGVKAMGL--ETCMTLGTLSESQAQRLANA---- 145 (345)
T ss_pred CCHHHHHHHHHH-HHHcCCCEEEE-EecCCCCC--cchHHHHHHHHHHHHhCCC--EEEEeCCcCCHHHHHHHHHc----
Confidence 478888887765 55689988833 33321111 1223446677788887775 344555 344555555543
Q ss_pred CCC-----ceeEEeeeccccc-c--cchhhHHHHHHHcCCeEEEecCCCCc
Q 017700 217 GVP-----LCSAQVQFSLLSM-G--ENQLEIKNICDSLGIRLISYSPLGLG 259 (367)
Q Consensus 217 ~~~-----~~~~q~~~n~~~~-~--~~~~~l~~~~~~~gi~v~a~~pl~~G 259 (367)
|.+ ++...-.|.-+.. . .+..+.++.+++.|+.+-+...+|.|
T Consensus 146 Gld~~n~~leT~p~~f~~I~~~~~~~~rl~~i~~a~~~G~~v~sg~i~Glg 196 (345)
T PRK15108 146 GLDYYNHNLDTSPEFYGNIITTRTYQERLDTLEKVRDAGIKVCSGGIVGLG 196 (345)
T ss_pred CCCEEeeccccChHhcCCCCCCCCHHHHHHHHHHHHHcCCceeeEEEEeCC
Confidence 332 1121111111111 1 12245678888889876555555544
No 242
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=24.54 E-value=5.4e+02 Score=23.40 Aligned_cols=96 Identities=10% Similarity=0.127 Sum_probs=54.5
Q ss_pred ChHHHHHHHHHHHhhhCCCcEEEEEeccCCCCCCChhHHHHHHHHHHHHHcC-cEeEEeecCCChHHHHHHHHHHHhcCC
Q 017700 140 TPGQFVNACRASLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKG-LVRAVGVSNYGPNQLVKIHDYLTARGV 218 (367)
Q Consensus 140 ~~~~i~~~l~~sL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~~~~L~~l~~~G-~ir~iGvS~~~~~~l~~~~~~~~~~~~ 218 (367)
+.+. +..+-+.|.++|+++|++-+ |. .. +.-++.++++.+.+ .++..++.....+.++.+.+. +.
T Consensus 18 ~~~~-k~~i~~~L~~~Gv~~iE~g~---p~--~~----~~~~e~~~~l~~~~~~~~~~~~~r~~~~~v~~a~~~----g~ 83 (259)
T cd07939 18 SREE-KLAIARALDEAGVDEIEVGI---PA--MG----EEEREAIRAIVALGLPARLIVWCRAVKEDIEAALRC----GV 83 (259)
T ss_pred CHHH-HHHHHHHHHHcCCCEEEEec---CC--CC----HHHHHHHHHHHhcCCCCEEEEeccCCHHHHHHHHhC----Cc
Confidence 4544 44555569999999999863 21 11 11256667777643 366677766666676655542 33
Q ss_pred CceeEEeeeccccc--------ccc-----hhhHHHHHHHcCCeEE
Q 017700 219 PLCSAQVQFSLLSM--------GEN-----QLEIKNICDSLGIRLI 251 (367)
Q Consensus 219 ~~~~~q~~~n~~~~--------~~~-----~~~l~~~~~~~gi~v~ 251 (367)
+ .+.+.++.-+. ..+ -...+++|+++|+.+.
T Consensus 84 ~--~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~ 127 (259)
T cd07939 84 T--AVHISIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVS 127 (259)
T ss_pred C--EEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEE
Confidence 3 33333322211 111 1257889999998765
No 243
>PRK14017 galactonate dehydratase; Provisional
Probab=24.50 E-value=4.2e+02 Score=25.76 Aligned_cols=71 Identities=13% Similarity=0.100 Sum_probs=49.0
Q ss_pred HHHHHHHHHcCcEe-EEeecCCChHHHHHHHHHHHhcCCCceeEEeeecccccccchhhHHHHHHHcCCeEEEecCC
Q 017700 181 WNGLVAMYEKGLVR-AVGVSNYGPNQLVKIHDYLTARGVPLCSAQVQFSLLSMGENQLEIKNICDSLGIRLISYSPL 256 (367)
Q Consensus 181 ~~~L~~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~v~a~~pl 256 (367)
++.+.+|++...+. ..|=|.++...+..+++. --++++|+..+.+---..-.++.+.|+.+||.++.++..
T Consensus 217 ~~~~~~L~~~~~~pIa~dEs~~~~~~~~~li~~-----~a~d~v~~d~~~~GGit~~~~ia~~A~~~gi~~~~h~~~ 288 (382)
T PRK14017 217 AEALPEIAAQTSIPIATGERLFSRWDFKRVLEA-----GGVDIIQPDLSHAGGITECRKIAAMAEAYDVALAPHCPL 288 (382)
T ss_pred HHHHHHHHhcCCCCEEeCCccCCHHHHHHHHHc-----CCCCeEecCccccCCHHHHHHHHHHHHHcCCeEeecCCC
Confidence 57788888877664 555566777777777664 346777777665421122247899999999999887654
No 244
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=24.42 E-value=4.3e+02 Score=24.64 Aligned_cols=50 Identities=20% Similarity=0.250 Sum_probs=38.1
Q ss_pred cEEEEEeccCCCCCCChhHHHHHHHHHHHHHcCcEeEEeecCCChHHHHHHH
Q 017700 159 QIGIGQLHWSTANYAPPQELALWNGLVAMYEKGLVRAVGVSNYGPNQLVKIH 210 (367)
Q Consensus 159 ~iDl~~lH~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~ 210 (367)
..++++|..|....++.....+++.|.+++++|. .+=++.|..+.+..+.
T Consensus 142 ~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~--tvi~~sH~~~~~~~~~ 191 (302)
T TIGR01188 142 QPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGV--TILLTTHYMEEADKLC 191 (302)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCC--EEEEECCCHHHHHHhC
Confidence 6789999988766667677789999999988885 4557888776655443
No 245
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=24.29 E-value=2.6e+02 Score=25.87 Aligned_cols=75 Identities=15% Similarity=0.228 Sum_probs=44.2
Q ss_pred cEeEEeecCC---ChHHHHHHHHHHHhcC----CCceeEEeeecccccccchhhHHHHHHHcCCeEEEecCCCCccccCC
Q 017700 192 LVRAVGVSNY---GPNQLVKIHDYLTARG----VPLCSAQVQFSLLSMGENQLEIKNICDSLGIRLISYSPLGLGMLTGK 264 (367)
Q Consensus 192 ~ir~iGvS~~---~~~~l~~~~~~~~~~~----~~~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~v~a~~pl~~G~L~~~ 264 (367)
.+-|+|+++. .+++|+++....+... .++.-+-+..+|-. +.. ..+.+++++..=.++. |||.
T Consensus 142 ~LiYFGFThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvDPeR-D~~-~~~~eY~~eF~pkllG--------LTGT 211 (280)
T KOG2792|consen 142 SLIYFGFTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVDPER-DSV-EVVAEYVSEFHPKLLG--------LTGT 211 (280)
T ss_pred EEEEecccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeCccc-CCH-HHHHHHHHhcChhhhc--------ccCC
Confidence 4789999886 4677777766655322 22222223333321 122 2788888887655543 4553
Q ss_pred CCCCCCCCChhhhhhhhhccChHHHHHHHHHHHHHhC
Q 017700 265 YTPSKLPRGPRALLFRQILPGLKPLLRSLKEIAERRG 301 (367)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~g 301 (367)
+ ++++.+|++|.
T Consensus 212 ~-------------------------eqvk~vak~yR 223 (280)
T KOG2792|consen 212 T-------------------------EQVKQVAKKYR 223 (280)
T ss_pred H-------------------------HHHHHHHHHhE
Confidence 1 78999999985
No 246
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=24.20 E-value=1.8e+02 Score=27.11 Aligned_cols=55 Identities=7% Similarity=0.062 Sum_probs=29.3
Q ss_pred ChHHHHHHHHHHHhcCCCceeEEeeeccc-----------ccccchhhHHHHHHHcCCeEEEecCC
Q 017700 202 GPNQLVKIHDYLTARGVPLCSAQVQFSLL-----------SMGENQLEIKNICDSLGIRLISYSPL 256 (367)
Q Consensus 202 ~~~~l~~~~~~~~~~~~~~~~~q~~~n~~-----------~~~~~~~~l~~~~~~~gi~v~a~~pl 256 (367)
+.+...+.++.|.++|++-..+---+.-. .....-.+++++++++||+|+.|.--
T Consensus 30 ~t~~~k~yIDfAa~~G~eYvlvD~GW~~~~~~~~~d~~~~~~~~dl~elv~Ya~~KgVgi~lw~~~ 95 (273)
T PF10566_consen 30 TTETQKRYIDFAAEMGIEYVLVDAGWYGWEKDDDFDFTKPIPDFDLPELVDYAKEKGVGIWLWYHS 95 (273)
T ss_dssp SHHHHHHHHHHHHHTT-SEEEEBTTCCGS--TTT--TT-B-TT--HHHHHHHHHHTT-EEEEEEEC
T ss_pred CHHHHHHHHHHHHHcCCCEEEeccccccccccccccccccCCccCHHHHHHHHHHcCCCEEEEEeC
Confidence 55666777777777776544443333210 01111247888888888887766443
No 247
>PF01297 TroA: Periplasmic solute binding protein family; InterPro: IPR006127 This is a family of ABC transporter metal-binding lipoproteins. An example is the periplasmic zinc-binding protein TroA P96116 from SWISSPROT that interacts with an ATP-binding cassette transport system in Treponema pallidum and plays a role in the transport of zinc across the cytoplasmic membrane. Related proteins are found in both Gram-positive and Gram-negative bacteria. ; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2PS9_A 2PS0_A 2OSV_A 2OGW_A 2PS3_A 2PRS_B 3MFQ_C 3GI1_B 2OV3_A 1PQ4_A ....
Probab=24.11 E-value=4.3e+02 Score=23.83 Aligned_cols=60 Identities=20% Similarity=0.367 Sum_probs=36.4
Q ss_pred EeEEeecC---CChHHHHHHHHHHHhcCCCceeEEeeecccccccchhhHHHHHHHcCCeEEEecCCCCc
Q 017700 193 VRAVGVSN---YGPNQLVKIHDYLTARGVPLCSAQVQFSLLSMGENQLEIKNICDSLGIRLISYSPLGLG 259 (367)
Q Consensus 193 ir~iGvS~---~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~v~a~~pl~~G 259 (367)
+..+|+++ .++.++.++.+.++..+++..+....++. ..+-..+++.|+.++...|++.+
T Consensus 172 ~~~~~~~~~~~ps~~~l~~l~~~ik~~~v~~i~~e~~~~~-------~~~~~la~~~g~~vv~ld~l~~~ 234 (256)
T PF01297_consen 172 IGVIEISPGEEPSPKDLAELIKLIKENKVKCIFTEPQFSS-------KLAEALAKETGVKVVYLDPLGGG 234 (256)
T ss_dssp EEEESSSSSSSS-HHHHHHHHHHHHHTT-SEEEEETTS-T-------HHHHHHHHCCT-EEEESSTTCST
T ss_pred eeeeccccccCCCHHHHHHHHHHhhhcCCcEEEecCCCCh-------HHHHHHHHHcCCcEEEeCCCcCC
Confidence 34444444 35677888888888887766555433322 13334478889999999999443
No 248
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=24.06 E-value=4.5e+02 Score=22.34 Aligned_cols=78 Identities=9% Similarity=-0.013 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHcCcEeEEeecCCChHHHHHHHHHHHhcCCCceeEEeeecccccccc----hhhHHHHHHHcCCeEEEe
Q 017700 178 LALWNGLVAMYEKGLVRAVGVSNYGPNQLVKIHDYLTARGVPLCSAQVQFSLLSMGEN----QLEIKNICDSLGIRLISY 253 (367)
Q Consensus 178 ~~~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~----~~~l~~~~~~~gi~v~a~ 253 (367)
+++++...+--++.-|++|=|..-+......+.+..+.. .++++ +.|+.-..... +.++.+..+++|..|..-
T Consensus 13 ~~tle~a~erA~elgik~~vVAS~tG~tA~k~lemveg~-lkvVv--Vthh~Gf~e~g~~e~~~E~~~~L~erGa~v~~~ 89 (186)
T COG1751 13 DETLEIAVERAKELGIKHIVVASSTGYTALKALEMVEGD-LKVVV--VTHHAGFEEKGTQEMDEEVRKELKERGAKVLTQ 89 (186)
T ss_pred HHHHHHHHHHHHhcCcceEEEEecccHHHHHHHHhcccC-ceEEE--EEeecccccCCceecCHHHHHHHHHcCceeeee
Confidence 345555544455666888888877777777777764421 33434 44443322221 247888999999999875
Q ss_pred cCCCC
Q 017700 254 SPLGL 258 (367)
Q Consensus 254 ~pl~~ 258 (367)
+-.-.
T Consensus 90 sHalS 94 (186)
T COG1751 90 SHALS 94 (186)
T ss_pred hhhhh
Confidence 54433
No 249
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=24.04 E-value=72 Score=26.16 Aligned_cols=20 Identities=30% Similarity=0.539 Sum_probs=18.3
Q ss_pred hHHHHHHHcCCeEEEecCCC
Q 017700 238 EIKNICDSLGIRLISYSPLG 257 (367)
Q Consensus 238 ~l~~~~~~~gi~v~a~~pl~ 257 (367)
++++.|+++||.|++|-.+.
T Consensus 48 e~v~a~h~~Girv~ay~~~~ 67 (132)
T PF14871_consen 48 EQVEACHERGIRVPAYFDFS 67 (132)
T ss_pred HHHHHHHHCCCEEEEEEeee
Confidence 89999999999999997775
No 250
>PRK05283 deoxyribose-phosphate aldolase; Provisional
Probab=23.94 E-value=5.8e+02 Score=23.56 Aligned_cols=80 Identities=14% Similarity=0.042 Sum_probs=52.6
Q ss_pred CCCHHHHHHHHHHHHH--CCCCEEeCCCCcCCCCCCChHHHHHHHHHhhCCCCCCCCC-cEEEEeeccCCCCCCChHHHH
Q 017700 69 ESMDSQLQQTFNLAVE--NGINLFDTADSYGTGRLNGKSEKLLGKFISEIPGQKQVQN-NIVIATKFAAYPWRLTPGQFV 145 (367)
Q Consensus 69 ~~~~~~a~~~l~~A~~--~Gi~~~DTA~~Yg~~~~~g~sE~~lG~al~~~~~~~~~R~-~v~i~tK~~~~~~~~~~~~i~ 145 (367)
..+.++..++++.|.+ .|+.-+=+.+.| =....+.|+. ... ++-|+|=+|.+....+.+.-.
T Consensus 22 ~~T~~~I~~lc~eA~~~~~~faaVcV~P~~---------v~~a~~~L~~------~~~~~vkv~tVigFP~G~~~t~~K~ 86 (257)
T PRK05283 22 DDTDEKVIALCHQAKTPVGNTAAICIYPRF---------IPIARKTLRE------QGTPEIRIATVTNFPHGNDDIDIAL 86 (257)
T ss_pred CCCHHHHHHHHHHHHhcCCCeeEEEECHHH---------HHHHHHHhcc------cCCCCCeEEEEecCCCCCCcHHHHH
Confidence 4567899999999999 577766655554 2233444432 111 477888887544444555556
Q ss_pred HHHHHHHhhhCCCcEEEEE
Q 017700 146 NACRASLARLQIEQIGIGQ 164 (367)
Q Consensus 146 ~~l~~sL~~Lg~d~iDl~~ 164 (367)
...++.++. |.|-||+++
T Consensus 87 ~Ea~~Ai~~-GAdEiD~Vi 104 (257)
T PRK05283 87 AETRAAIAY-GADEVDVVF 104 (257)
T ss_pred HHHHHHHHc-CCCEEeeec
Confidence 667777774 999999865
No 251
>cd03320 OSBS o-Succinylbenzoate synthase (OSBS) catalyzes the conversion of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate (SHCHC) to 4-(2'-carboxyphenyl)-4-oxobutyrate (o-succinylbenzoate or OSB), a reaction in the menaquinone biosynthetic pathway. Menaquinone is an essential cofactor for anaerobic growth in eubacteria and some archaea. OSBS belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=23.93 E-value=4.8e+02 Score=23.73 Aligned_cols=73 Identities=18% Similarity=0.103 Sum_probs=37.9
Q ss_pred HHHHHHHHHcCcEeEEeecCCChHHHHHHHHHHHhcCCCceeEEeeecccccccchhhHHHHHHHcCCeEEEecCCCCc
Q 017700 181 WNGLVAMYEKGLVRAVGVSNYGPNQLVKIHDYLTARGVPLCSAQVQFSLLSMGENQLEIKNICDSLGIRLISYSPLGLG 259 (367)
Q Consensus 181 ~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~v~a~~pl~~G 259 (367)
++.+.++. .+.=-..|=|-++...+..+++. ..++++|+.....---..-.++...|+.+|+.++..+-+..+
T Consensus 167 ~~~~~~l~-~~~PIa~dEs~~~~~~~~~~~~~-----~~~d~v~~k~~~~GGit~~~~i~~~a~~~gi~~~~~~~~es~ 239 (263)
T cd03320 167 LAELRRLA-AGVPIALDESLRRLDDPLALAAA-----GALGALVLKPALLGGPRALLELAEEARARGIPAVVSSALESS 239 (263)
T ss_pred HHHHHHhh-cCCCeeeCCccccccCHHHHHhc-----CCCCEEEECchhcCCHHHHHHHHHHHHHcCCCEEEEcchhhH
Confidence 34444444 22222344444444455554443 235666666554321112246788888999888776544433
No 252
>PF01890 CbiG_C: Cobalamin synthesis G C-terminus; InterPro: IPR002750 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CbiG proteins are specific for anaerobic cobalamin biosynthesis. CbiG, which shows homology with CobE of the aerobic pathway, participates in the conversion of cobalt-precorrin 5 into cobalt-precorrin 6 []. CbiG is responsible for the opening of the delta-lactone ring and extrusion of the C2-unit []. The aerobic pathway uses molecular oxygen to trigger the events at C-20 leading to contraction and expulsion of the C2-unit as acetic acid from a metal-free intermediate, whereas the anaerobic route involves the internal delivery of oxygen from a carboxylic acid terminus to C-20 followed by extrusion of the C2-unit as acetaldehyde, using cobalt complexes as substrates []. This entry represents the core domain of CibG.; GO: 0009236 cobalamin biosynthetic process; PDB: 3BY5_A 2W6K_A 2W6L_A 3EEQ_B.
Probab=23.85 E-value=3.2e+02 Score=21.85 Aligned_cols=54 Identities=19% Similarity=0.226 Sum_probs=31.5
Q ss_pred ChHHHH-HHHHHHHhcCCCceeEEeeecccccccchhhHHHHHHHcCCeEEEecCC
Q 017700 202 GPNQLV-KIHDYLTARGVPLCSAQVQFSLLSMGENQLEIKNICDSLGIRLISYSPL 256 (367)
Q Consensus 202 ~~~~l~-~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~v~a~~pl 256 (367)
+.+.+. .+.+.++..++.+..+-.--++-....+. .+++++++.|+++..|++-
T Consensus 13 ~~~~i~~ai~~~l~~~~~~~~~i~~iasi~~K~~E~-~l~~~A~~l~~~~~~~~~e 67 (121)
T PF01890_consen 13 PAEEIEEAIEQALAEAGLSPRSIAAIASIDIKADEP-GLLELAEELGIPLRFFSAE 67 (121)
T ss_dssp -HHHHHHHHHHHHHHCT--GGGEEEEEESSSSS--H-HHHHHHHHCTSEEEEE-HH
T ss_pred CHHHHHHHHHHHHHHcCCChhhccEEEeccccCCCH-HHHHHHHHhCCCeEEECHH
Confidence 344444 34444455566665555555654444444 8999999999999988653
No 253
>TIGR00381 cdhD CO dehydrogenase/acetyl-CoA synthase, delta subunit. This is the small subunit of a heterodimer which catalyzes the reaction CO + H2O + Acceptor = CO2 + Reduced acceptor and is involved in the synthesis of acetyl-CoA from CO2 and H2.
Probab=23.81 E-value=7.1e+02 Score=24.52 Aligned_cols=99 Identities=15% Similarity=0.159 Sum_probs=53.8
Q ss_pred hhhCCCcEEEEEeccCCCCC--CChhHHHHHHHHHHHHHcCcE-eEEeec---CCChHHHHHHHHHHHhcCCCceeEEee
Q 017700 153 ARLQIEQIGIGQLHWSTANY--APPQELALWNGLVAMYEKGLV-RAVGVS---NYGPNQLVKIHDYLTARGVPLCSAQVQ 226 (367)
Q Consensus 153 ~~Lg~d~iDl~~lH~~~~~~--~~~~~~~~~~~L~~l~~~G~i-r~iGvS---~~~~~~l~~~~~~~~~~~~~~~~~q~~ 226 (367)
+.+| .|++.||....+. .+...++..++.++..+.=.+ --|+=| ..+++.+++.++.+... .+-++-..
T Consensus 150 ~~~~---aD~Ialr~~S~DP~~~d~~~~e~a~~vk~V~~av~vPLIL~gsg~~~kD~eVLeaaLe~~~G~--kpLL~SAt 224 (389)
T TIGR00381 150 KEFG---ADMVTIHLISTDPKLDDKSPSEAAKVLEDVLQAVDVPIVIGGSGNPEKDPLVLEKAAEVAEGE--RCLLASAN 224 (389)
T ss_pred HHhC---CCEEEEEecCCCccccccCHHHHHHHHHHHHHhCCCCEEEeCCCCCcCCHHHHHHHHHHhCCC--CcEEEecC
Confidence 5554 6777788642211 111222345555555332222 222222 44677888888876432 23232222
Q ss_pred ecccccccchhhHHHHHHHcCCeEEEecCCCCccc
Q 017700 227 FSLLSMGENQLEIKNICDSLGIRLISYSPLGLGML 261 (367)
Q Consensus 227 ~n~~~~~~~~~~l~~~~~~~gi~v~a~~pl~~G~L 261 (367)
... ... .+.+.|+++|..|++++|..-+.+
T Consensus 225 ~e~----Ny~-~ia~lAk~yg~~Vvv~s~~Din~a 254 (389)
T TIGR00381 225 LDL----DYE-KIANAAKKYGHVVLSWTIMDINMQ 254 (389)
T ss_pred chh----hHH-HHHHHHHHhCCeEEEEcCCcHHHH
Confidence 210 222 789999999999999998876643
No 254
>PF06415 iPGM_N: BPG-independent PGAM N-terminus (iPGM_N); InterPro: IPR011258 This family represents the N-terminal region of the 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (or phosphoglyceromutase or BPG-independent PGAM) protein (5.4.2.1 from EC). The family is found in conjunction with Metalloenzyme (located in the C-terminal region of the protein). ; GO: 0004619 phosphoglycerate mutase activity, 0030145 manganese ion binding, 0006007 glucose catabolic process, 0005737 cytoplasm; PDB: 1EQJ_A 1EJJ_A 1O99_A 1O98_A 3IGZ_B 3IGY_B 3NVL_A 2IFY_A.
Probab=23.77 E-value=4.5e+02 Score=23.70 Aligned_cols=75 Identities=15% Similarity=0.161 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHc-CcEeEEeecCCC-----hHHHHHHHHHHHhcCCCceeEEeeecccccccc-----hhhHHHHHHHc
Q 017700 178 LALWNGLVAMYEK-GLVRAVGVSNYG-----PNQLVKIHDYLTARGVPLCSAQVQFSLLSMGEN-----QLEIKNICDSL 246 (367)
Q Consensus 178 ~~~~~~L~~l~~~-G~ir~iGvS~~~-----~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~-----~~~l~~~~~~~ 246 (367)
+.+.++++.+++. |++--+|+-+.+ .+++..+++.++..|++.+++..-.-=-+..+. -+.+.+.+.+.
T Consensus 14 ~~l~~~~~~~k~~~~~lHl~GLlSdGGVHSh~~Hl~al~~~a~~~gv~~V~vH~f~DGRDt~P~S~~~yl~~l~~~l~~~ 93 (223)
T PF06415_consen 14 PVLLEAIEHAKKNGGRLHLMGLLSDGGVHSHIDHLFALIKLAKKQGVKKVYVHAFTDGRDTPPKSALKYLEELEEKLAEI 93 (223)
T ss_dssp HHHHHHHHHHCCTT--EEEEEEESS-SSS--HHHHHHHHHHHHHTT-SEEEEEEEE-SSSS-TTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCeEEEEEEecCCCccccHHHHHHHHHHHHHcCCCEEEEEEecCCCCCCcchHHHHHHHHHHHHHhh
Confidence 3456777777764 566777764433 366888888888877665444443322222221 13567777777
Q ss_pred CCeEEE
Q 017700 247 GIRLIS 252 (367)
Q Consensus 247 gi~v~a 252 (367)
|++-+|
T Consensus 94 ~~g~IA 99 (223)
T PF06415_consen 94 GIGRIA 99 (223)
T ss_dssp TCTEEE
T ss_pred CCceEE
Confidence 776555
No 255
>COG2896 MoaA Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism]
Probab=23.76 E-value=6.5e+02 Score=24.09 Aligned_cols=128 Identities=15% Similarity=0.193 Sum_probs=72.4
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEeCCCCcCCCCCCChHHHHHHHHH----hhCCCCCCCCCcEEEEeeccCCCCCCChHHH
Q 017700 69 ESMDSQLQQTFNLAVENGINLFDTADSYGTGRLNGKSEKLLGKFI----SEIPGQKQVQNNIVIATKFAAYPWRLTPGQF 144 (367)
Q Consensus 69 ~~~~~~a~~~l~~A~~~Gi~~~DTA~~Yg~~~~~g~sE~~lG~al----~~~~~~~~~R~~v~i~tK~~~~~~~~~~~~i 144 (367)
-.+.++...+++.+.+.|++=+= .=|. |..|.+-| +.... ..-.++-++|-. ..
T Consensus 42 ~Ls~eei~~~~~~~~~~Gv~kvR---lTGG-------EPllR~dl~eIi~~l~~--~~~~~islTTNG----------~~ 99 (322)
T COG2896 42 LLSLEEIRRLVRAFAELGVEKVR---LTGG-------EPLLRKDLDEIIARLAR--LGIRDLSLTTNG----------VL 99 (322)
T ss_pred cCCHHHHHHHHHHHHHcCcceEE---EeCC-------CchhhcCHHHHHHHHhh--cccceEEEecch----------hh
Confidence 56789999999999999998774 2232 33333322 22110 112456666654 34
Q ss_pred HHHHHHHHhhhCCCcEEEEEeccCCCC-CCCh----hHHHHHHHHHHHHHcCc----EeEEeecCCChHHHHHHHHHHHh
Q 017700 145 VNACRASLARLQIEQIGIGQLHWSTAN-YAPP----QELALWNGLVAMYEKGL----VRAVGVSNYGPNQLVKIHDYLTA 215 (367)
Q Consensus 145 ~~~l~~sL~~Lg~d~iDl~~lH~~~~~-~~~~----~~~~~~~~L~~l~~~G~----ir~iGvS~~~~~~l~~~~~~~~~ 215 (367)
......-|+.-|++.+. +.||..++. +..+ ..+.+++.+++.++.|. |..+=+-+.+..++..+++.++.
T Consensus 100 L~~~a~~Lk~AGl~rVN-VSLDsld~e~f~~IT~~~~~~~Vl~GI~~A~~~Gl~pVKlN~Vv~kgvNd~ei~~l~e~~~~ 178 (322)
T COG2896 100 LARRAADLKEAGLDRVN-VSLDSLDPEKFRKITGRDRLDRVLEGIDAAVEAGLTPVKLNTVLMKGVNDDEIEDLLEFAKE 178 (322)
T ss_pred HHHHHHHHHHcCCcEEE-eecccCCHHHHHHHhCCCcHHHHHHHHHHHHHcCCCceEEEEEEecCCCHHHHHHHHHHHhh
Confidence 45566677888888776 345544321 0000 12446666777777665 34444555566666666666655
Q ss_pred cCCC
Q 017700 216 RGVP 219 (367)
Q Consensus 216 ~~~~ 219 (367)
.+..
T Consensus 179 ~~~~ 182 (322)
T COG2896 179 RGAQ 182 (322)
T ss_pred cCCc
Confidence 5543
No 256
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=23.74 E-value=5.4e+02 Score=23.14 Aligned_cols=15 Identities=20% Similarity=0.253 Sum_probs=12.3
Q ss_pred hHHHHHHHcCCeEEE
Q 017700 238 EIKNICDSLGIRLIS 252 (367)
Q Consensus 238 ~l~~~~~~~gi~v~a 252 (367)
+.++.|++.|..++.
T Consensus 89 ~~i~~a~~lga~~i~ 103 (258)
T PRK09997 89 AAIRYARALGNKKIN 103 (258)
T ss_pred HHHHHHHHhCCCEEE
Confidence 678889999988765
No 257
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=23.68 E-value=6e+02 Score=23.65 Aligned_cols=110 Identities=14% Similarity=0.104 Sum_probs=59.9
Q ss_pred CCCChHHHHHHHHHHHhhhCCCcEEEEEeccCCCCCCChhHHHHHHHHHHHHH--cCcE-eEEeecCCChHHHHHHHHHH
Q 017700 137 WRLTPGQFVNACRASLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYE--KGLV-RAVGVSNYGPNQLVKIHDYL 213 (367)
Q Consensus 137 ~~~~~~~i~~~l~~sL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~~~~L~~l~~--~G~i-r~iGvS~~~~~~l~~~~~~~ 213 (367)
...+.+.+++-++..++ -|++. +++-.-......+..+|-.+.++..++ .|++ -..|++. +..+..++.+.+
T Consensus 21 g~iD~~~l~~li~~l~~-~Gv~g---i~v~GstGE~~~Lt~eEr~~v~~~~~~~~~g~~pvi~gv~~-~t~~ai~~a~~a 95 (296)
T TIGR03249 21 GSFDEAAYRENIEWLLG-YGLEA---LFAAGGTGEFFSLTPAEYEQVVEIAVSTAKGKVPVYTGVGG-NTSDAIEIARLA 95 (296)
T ss_pred CCcCHHHHHHHHHHHHh-cCCCE---EEECCCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecCc-cHHHHHHHHHHH
Confidence 45678888888888776 56544 444332222223333333333443333 3542 4566764 555555666677
Q ss_pred HhcCCCceeEEeeecccccccchhhHHHH----HHHcCCeEEEec
Q 017700 214 TARGVPLCSAQVQFSLLSMGENQLEIKNI----CDSLGIRLISYS 254 (367)
Q Consensus 214 ~~~~~~~~~~q~~~n~~~~~~~~~~l~~~----~~~~gi~v~a~~ 254 (367)
+..|.+-.++..+|... ..+++++++ +...+++++.|.
T Consensus 96 ~~~Gadav~~~pP~y~~---~s~~~i~~~f~~v~~a~~~pvilYn 137 (296)
T TIGR03249 96 EKAGADGYLLLPPYLIN---GEQEGLYAHVEAVCESTDLGVIVYQ 137 (296)
T ss_pred HHhCCCEEEECCCCCCC---CCHHHHHHHHHHHHhccCCCEEEEe
Confidence 77777654554444321 122255444 445578999997
No 258
>PRK13015 3-dehydroquinate dehydratase; Reviewed
Probab=23.62 E-value=4.4e+02 Score=22.09 Aligned_cols=78 Identities=18% Similarity=0.155 Sum_probs=55.1
Q ss_pred CChHHHHHHHHHHHhhhCCCcEEEEEeccCCCCCCChhHHHHHHHHHHHHH--cCcEeEEeecCCChHHHHHHHHHHHhc
Q 017700 139 LTPGQFVNACRASLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYE--KGLVRAVGVSNYGPNQLVKIHDYLTAR 216 (367)
Q Consensus 139 ~~~~~i~~~l~~sL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~~~~L~~l~~--~G~ir~iGvS~~~~~~l~~~~~~~~~~ 216 (367)
.+-++|.+.+++.-+.+|. .++++|=. .+.++++.+.+..+ +|.|-.=|--+|..-.+..++..
T Consensus 26 ~tl~~i~~~~~~~a~~~g~-~~~~~QSN---------~EGelId~i~~a~~~~dgiIINpga~THtSiAl~DAl~~---- 91 (146)
T PRK13015 26 ETLADVEALCRAAAEALGL-EVEFRQSN---------HEGELIDWIHEARGDVAGIVINPGAYTHTSVAIRDALAA---- 91 (146)
T ss_pred CCHHHHHHHHHHHHHHcCC-EEEEEeeC---------cHHHHHHHHHHhhhcCCEEEEcchHHhhhHHHHHHHHHc----
Confidence 3788999999999999997 45655432 24568888887755 46666666666666666666665
Q ss_pred CCCceeEEeeecccc
Q 017700 217 GVPLCSAQVQFSLLS 231 (367)
Q Consensus 217 ~~~~~~~q~~~n~~~ 231 (367)
+...+++++.+-..
T Consensus 92 -~~~P~VEVHiSNi~ 105 (146)
T PRK13015 92 -LELPVIEVHISNVH 105 (146)
T ss_pred -CCCCEEEEEcCCcc
Confidence 56667888887764
No 259
>PRK14847 hypothetical protein; Provisional
Probab=23.49 E-value=5.9e+02 Score=24.51 Aligned_cols=104 Identities=11% Similarity=0.104 Sum_probs=59.9
Q ss_pred HHHHHHHHhhhCCCcEEEEEeccCCCCCCChhHHHHHHHHHHHHHcCc----EeEEeecCCChHHHHHHHHHHHhcCCCc
Q 017700 145 VNACRASLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKGL----VRAVGVSNYGPNQLVKIHDYLTARGVPL 220 (367)
Q Consensus 145 ~~~l~~sL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~~~~L~~l~~~G~----ir~iGvS~~~~~~l~~~~~~~~~~~~~~ 220 (367)
+-.+-+.|..+|+|.|.. -+|. .. .+-.++..++.+.|+ ++-.+++....+.++...+.....+...
T Consensus 56 Kl~IA~~L~~lGVd~IEv---G~Pa---~s---~~e~e~ir~I~~~~~~~~~~~i~~~~r~~~~dId~a~e~~~~~~~~~ 126 (333)
T PRK14847 56 KLRLFEQLVAVGLKEIEV---AFPS---AS---QTDFDFVRKLIDERRIPDDVTIEALTQSRPDLIARTFEALAGSPRAI 126 (333)
T ss_pred HHHHHHHHHHcCCCEEEe---eCCC---CC---HHHHHHHHHHHHhCCCCCCcEEEEEecCcHHHHHHHHHHhCCCCCCE
Confidence 455677799999988875 2331 11 112577777777764 5667777777777888877643222233
Q ss_pred eeEEeeecccccc------cc-----hhhHHHHHHHcCC---e---EEEecCCC
Q 017700 221 CSAQVQFSLLSMG------EN-----QLEIKNICDSLGI---R---LISYSPLG 257 (367)
Q Consensus 221 ~~~q~~~n~~~~~------~~-----~~~l~~~~~~~gi---~---v~a~~pl~ 257 (367)
..+-+.-|.++.. .+ -.+.+.++++++. + .+.+++--
T Consensus 127 Vhi~~p~Sd~h~~~kl~~s~~~vl~~~~~~v~~Ak~~~~~~~g~~~~V~~~~ED 180 (333)
T PRK14847 127 VHLYNPIAPQWRRIVFGMSRAEIKEIALAGTRQIRALADANPGTQWIYEYSPET 180 (333)
T ss_pred EEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHhccccCCCceEEEEeeec
Confidence 3333334433221 11 0345778888954 2 35666554
No 260
>PF00697 PRAI: N-(5'phosphoribosyl)anthranilate (PRA) isomerase; InterPro: IPR001240 Indole-3-glycerol phosphate synthase (IGPS) (see IPR001468 from INTERPRO) catalyzes the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyzes N-(5-phosphoribosyl)anthranilate isomerase (PRAI) activity, the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (GATase) N-terminal domain (see IPR000991 from INTERPRO). Phosphoribosylanthranilate isomerase (PRAI) is monomeric and labile in most mesophilic microorganisms, but dimeric and stable in the hyperthermophile Thermotoga maritima (tPRAI) []. The comparison to the known 2.0 A structure of PRAI from Escherichia coli (ePRAI) shows that tPRAI has the complete TIM- or (beta alp ha)8-barrel fold, whereas helix alpha5 in ePRAI is replaced by a loop. The subunits of tPRAI associate via the N-terminal faces of their central beta-barrels. Two long, symmetry-related loops that protrude reciprocally into cavities of the other subunit provide for multiple hydrophobic interactions. Moreover, the side chains of the N-terminal methionines and the C-terminal leucines of both subunits are immobilized in a hydrophobic cluster, and the number of salt bridges is increased in tPRAI. These features appear to be mainly responsible for the high thermostability of tPRAI []. ; GO: 0004640 phosphoribosylanthranilate isomerase activity, 0006568 tryptophan metabolic process; PDB: 1V5X_A 1PII_A 1JCM_P 2KZH_A 1LBM_A 1DL3_A 1NSJ_A.
Probab=23.46 E-value=2.6e+02 Score=24.35 Aligned_cols=67 Identities=15% Similarity=0.050 Sum_probs=37.8
Q ss_pred HHhhhCCCcEEEEEeccCCCCCCChhHHHHHHHHHHHHHcCcEeEEeecCC-ChHHHHHHHHHHHhcCCCceeEEeeecc
Q 017700 151 SLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKGLVRAVGVSNY-GPNQLVKIHDYLTARGVPLCSAQVQFSL 229 (367)
Q Consensus 151 sL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvS~~-~~~~l~~~~~~~~~~~~~~~~~q~~~n~ 229 (367)
.+..+|.||+=+.+. +.. ...+ ..+.+.+|.+.-..+.+||..- +.+.+.++.+. ..++++|++-+-
T Consensus 14 ~~~~~g~d~~Gfi~~--~~S-~R~v----~~~~a~~l~~~~~~~~VgVf~~~~~~~I~~~~~~-----~~ld~vQLHG~e 81 (197)
T PF00697_consen 14 LAAELGADYLGFIFY--PKS-PRYV----SPDQARELVSAVPPKIVGVFVNQSPEEILEIVEE-----LGLDVVQLHGDE 81 (197)
T ss_dssp HHHHHTSSEEEEE----TTC-TTB------HHHHHHHHCCSSSSEEEEESSS-HHHHHHHHHH-----CTESEEEE-SGG
T ss_pred HHHHcCCCEEeeecC--CCC-CCcc----CHHHHHHHHHhcCCCEEEEEcCCCHHHHHHHHHH-----cCCCEEEECCCC
Confidence 456789999988643 321 1222 2355556655555448887543 44445554443 679999998765
No 261
>TIGR01861 ANFD nitrogenase iron-iron protein, alpha chain. This model represents the all-iron variant of the nitrogenase component I alpha chain. Molybdenum-iron and vanadium iron forms are also found. The complete complex contains two alpha chains, two beta chains and two delta chains. The component I associates with component II also known as the iron protein which serves to provide electrons for component I.
Probab=23.44 E-value=6.6e+02 Score=25.75 Aligned_cols=112 Identities=14% Similarity=0.158 Sum_probs=59.7
Q ss_pred CCCcCCCCCCChHHHH----HHHHHhhCCCCCCCCCcEEEEeeccCCCCCCChHHHHHHHHHHHhhhCCCcEEEEEeccC
Q 017700 93 ADSYGTGRLNGKSEKL----LGKFISEIPGQKQVQNNIVIATKFAAYPWRLTPGQFVNACRASLARLQIEQIGIGQLHWS 168 (367)
Q Consensus 93 A~~Yg~~~~~g~sE~~----lG~al~~~~~~~~~R~~v~i~tK~~~~~~~~~~~~i~~~l~~sL~~Lg~d~iDl~~lH~~ 168 (367)
.-.||. |+- |-++++.++ ..+-++|.|-+..- +--++|..-+++.-++.. -+.++.+|.|
T Consensus 106 diVfGG-------e~kL~~~I~ea~~~~~----~p~~I~V~tTC~t~---lIGDDi~av~k~~~~~~~--~~pVi~v~tp 169 (513)
T TIGR01861 106 HVVFGA-------EKLLKQNIIEAFKAFP----HIKRMTIYQTCATA---LIGDDIAAIAKEVMEEMP--DVDIFVCNSP 169 (513)
T ss_pred ceEeCc-------HHHHHHHHHHHHHhCC----CCCeEEEEccCchh---hccCCHHHHHHHHHHhcC--CCcEEEEeCC
Confidence 446775 664 455555542 24458888877432 234455555555444431 2689999988
Q ss_pred CCCCCCh--hHHHHHHH-HHHHHH--------cCcEeEEeecCCChHHHHHHHHHHHhcCCCce
Q 017700 169 TANYAPP--QELALWNG-LVAMYE--------KGLVRAVGVSNYGPNQLVKIHDYLTARGVPLC 221 (367)
Q Consensus 169 ~~~~~~~--~~~~~~~~-L~~l~~--------~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~ 221 (367)
+...... ....+.++ ++.+.. .+.|.-||-.|+ +..+.++.+.++..|+.+.
T Consensus 170 GF~G~~~~gg~~~a~~ali~~~v~~~~~~~~~~~~VNliG~~n~-~gD~~eik~lLe~~Gl~v~ 232 (513)
T TIGR01861 170 GFAGPSQSGGHHKINIAWINQKVGTVEPEIKGKHVINYVGEYNI-QGDQEVMVDYFQRMGIQVL 232 (513)
T ss_pred CccCccccchHHHHHHHHHHHhhcccCcccCCCCeEEEeCCCCC-ccCHHHHHHHHHHCCCeEE
Confidence 5432111 11112222 333332 367888987665 3345666676666666543
No 262
>KOG2534 consensus DNA polymerase IV (family X) [Replication, recombination and repair]
Probab=23.35 E-value=2.5e+02 Score=26.86 Aligned_cols=122 Identities=18% Similarity=0.189 Sum_probs=63.9
Q ss_pred cEEEEEeccCCCCCCChhHHHHHHH-HHHHHHcCcEeEEe--ecCCChHHHHHHHHHHHhcCCCceeEEee-------ec
Q 017700 159 QIGIGQLHWSTANYAPPQELALWNG-LVAMYEKGLVRAVG--VSNYGPNQLVKIHDYLTARGVPLCSAQVQ-------FS 228 (367)
Q Consensus 159 ~iDl~~lH~~~~~~~~~~~~~~~~~-L~~l~~~G~ir~iG--vS~~~~~~l~~~~~~~~~~~~~~~~~q~~-------~n 228 (367)
-+|+++-| |... . ....++.. +..|.++|+|-++= .|+...-.+..........+.-+-+.+++ ++
T Consensus 189 DvD~Lith-P~~~--s-~~~~~~~~l~~~le~~g~il~~~~~~S~~Ek~~l~~~~s~~~~~~~~mgv~~LPr~~~~~~~~ 264 (353)
T KOG2534|consen 189 DVDFLITH-PGST--S-TEAKLLQLLMILLEKKGLLLYYDQLHSCGEKLRLPSRKSALDHFKKFMGVFRLPRQRVDSDQS 264 (353)
T ss_pred CeeEEEeC-CCCC--c-hhhhHHHHHHHHHHhcCeEEEEeeeccccccccccchhhhHhhhhhEEEEEEcCccccccccc
Confidence 48999999 4221 1 13334444 45777899988663 34433322222222211111112223333 11
Q ss_pred ccccccchhhHHHHHHHcCCeEEEecCCCCccccCCCCCCCCCCChhhhhhhhhccChHHHHHHHHHHHHHhCCCHHHHH
Q 017700 229 LLSMGENQLEIKNICDSLGIRLISYSPLGLGMLTGKYTPSKLPRGPRALLFRQILPGLKPLLRSLKEIAERRGKTIPQVA 308 (367)
Q Consensus 229 ~~~~~~~~~~l~~~~~~~gi~v~a~~pl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~g~t~~qla 308 (367)
-++.... ..|+.-+|-|+.|+-++-|+|. |+. .....+.++.+|.+.|++..+-+
T Consensus 265 S~n~~~~-----~~~rRvDivv~P~~~~~~alLg--wTG------------------S~~FnR~lR~~A~~kG~~l~~h~ 319 (353)
T KOG2534|consen 265 SWNEGKG-----WKARRVDIVVCPYDEFGFALLG--WTG------------------SKEFNRDLRRYATHKGFSLDEHA 319 (353)
T ss_pred ccCCCCC-----CceeeeEEEEechHHcceeeee--ecc------------------hHHHHHHHHHHHHhcCceecccc
Confidence 1111122 1467778888888888888763 111 11222688889988888887754
Q ss_pred H
Q 017700 309 I 309 (367)
Q Consensus 309 l 309 (367)
|
T Consensus 320 L 320 (353)
T KOG2534|consen 320 L 320 (353)
T ss_pred c
Confidence 4
No 263
>PRK12268 methionyl-tRNA synthetase; Reviewed
Probab=23.30 E-value=7.9e+02 Score=25.19 Aligned_cols=46 Identities=13% Similarity=0.331 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHhhhCCCcEEEEEeccCCCCCCChhHHHHHHHHHHHHHcCcE
Q 017700 142 GQFVNACRASLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKGLV 193 (367)
Q Consensus 142 ~~i~~~l~~sL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~~~~L~~l~~~G~i 193 (367)
+...+.+.+.+++||++ .|.+ +. ..++.....+.+.+.+|.++|.|
T Consensus 73 ~~~~~~~~~~~~~l~i~-~d~~----~~-t~~~~~~~~~~~~~~~L~~~G~~ 118 (556)
T PRK12268 73 DKYHEEHKEDFKKLGIS-YDLF----TR-TTSPNHHEVVQEFFLKLYENGYI 118 (556)
T ss_pred HHHHHHHHHHHHHcCCc-CCCC----cC-CCCHHHHHHHHHHHHHHHHCCCe
Confidence 44577889999999996 4642 11 11234456688999999999997
No 264
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=23.29 E-value=78 Score=28.82 Aligned_cols=81 Identities=17% Similarity=0.272 Sum_probs=45.7
Q ss_pred CcccCcceecccccCCCCcCC-CCCCCHHHHHHHHHHH----HHCCCCEEeCCC--C-cCCCCCCChHHHHHHHHHhhCC
Q 017700 46 PLSASPMGFGTWAWGNQFLWG-YQESMDSQLQQTFNLA----VENGINLFDTAD--S-YGTGRLNGKSEKLLGKFISEIP 117 (367)
Q Consensus 46 g~~vs~lglGt~~~g~~~~~g-~~~~~~~~a~~~l~~A----~~~Gi~~~DTA~--~-Yg~~~~~g~sE~~lG~al~~~~ 117 (367)
|+.+|.+||...+- ++.| .++...+++.+++..| .+.|||.|--|. . |.. + .|+...+++....
T Consensus 67 gv~ipSmClSaHRR---fPfGS~D~~~r~~aleiM~KaI~LA~dLGIRtIQLAGYDVYYE~----~-d~eT~~rFi~g~~ 138 (287)
T COG3623 67 GVRIPSMCLSAHRR---FPFGSKDEATRQQALEIMEKAIQLAQDLGIRTIQLAGYDVYYEE----A-DEETRQRFIEGLK 138 (287)
T ss_pred CCCccchhhhhhcc---CCCCCCCHHHHHHHHHHHHHHHHHHHHhCceeEeeccceeeecc----C-CHHHHHHHHHHHH
Confidence 88899999987651 2233 2333445666666554 578999998775 2 322 2 2334444433211
Q ss_pred C--CCCCCCcEEEEeeccC
Q 017700 118 G--QKQVQNNIVIATKFAA 134 (367)
Q Consensus 118 ~--~~~~R~~v~i~tK~~~ 134 (367)
. .-..+..|.++.-+.-
T Consensus 139 ~a~~lA~~aqV~lAvEiMD 157 (287)
T COG3623 139 WAVELAARAQVMLAVEIMD 157 (287)
T ss_pred HHHHHHHhhccEEEeeecc
Confidence 0 0024667888877753
No 265
>TIGR03221 muco_delta muconolactone delta-isomerase. Members of this protein family are muconolactone delta-isomerase (EC 5.3.3.4), the CatC protein of the ortho cleavage pathway for metabolizing aromatic compounds by way of catechol.
Probab=23.07 E-value=1.7e+02 Score=22.41 Aligned_cols=51 Identities=14% Similarity=0.161 Sum_probs=32.7
Q ss_pred HHHHHHHHcCcEeEEe--------ecCCChHHHHHHHHHHHhcCCC-ceeEEeeeccccccc
Q 017700 182 NGLVAMYEKGLVRAVG--------VSNYGPNQLVKIHDYLTARGVP-LCSAQVQFSLLSMGE 234 (367)
Q Consensus 182 ~~L~~l~~~G~ir~iG--------vS~~~~~~l~~~~~~~~~~~~~-~~~~q~~~n~~~~~~ 234 (367)
+.-.+|+++|+++++- +|-|+.+.-+++.+.... .| +...++...++.+-+
T Consensus 28 a~a~eLq~~Gk~~~lWRv~G~~~n~sifdv~s~~eLh~iL~s--LPL~p~m~i~VtpL~~HP 87 (90)
T TIGR03221 28 AYAQELQREGKWRHLWRVAGEYANYSIFDVESNDELHTLLSG--LPLFPYMDIEVTPLARHP 87 (90)
T ss_pred HHHHHHHhCCceEEEEEecCCceeEEEEEcCCHHHHHHHHHh--CCCCcceEeEEEEccCCC
Confidence 4667899999998875 344555545555555443 33 456777777776543
No 266
>cd01967 Nitrogenase_MoFe_alpha_like Nitrogenase_MoFe_alpha_like: Nitrogenase MoFe protein, alpha subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. Three genetically distinct types of nitrogenase systems are known to exist: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). This group contains the alpha subunit of component 1 of all three different forms. The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. The role of the delta subunit is unknown. For MoFe, each alphabeta pair of subunits contains one
Probab=23.07 E-value=7e+02 Score=24.22 Aligned_cols=107 Identities=15% Similarity=0.079 Sum_probs=56.6
Q ss_pred HHHHHHHHhhCCCCCCCCCcEEEEeeccCCCCCCChHHHHHHHHHHHhhhCCCcEEEEEeccCCCCC--CChhHHHHHHH
Q 017700 106 EKLLGKFISEIPGQKQVQNNIVIATKFAAYPWRLTPGQFVNACRASLARLQIEQIGIGQLHWSTANY--APPQELALWNG 183 (367)
Q Consensus 106 E~~lG~al~~~~~~~~~R~~v~i~tK~~~~~~~~~~~~i~~~l~~sL~~Lg~d~iDl~~lH~~~~~~--~~~~~~~~~~~ 183 (367)
|+.|-++++...+ ....+=++|.|-+.+. .--+++..-+++.-++.+ +.++.+|.++... .....+.++++
T Consensus 72 ~~~L~~~i~~~~~-~~~P~~i~v~~tC~~~---~iGdDi~~v~~~~~~~~~---~~vi~v~t~gf~g~~~~~G~~~a~~a 144 (406)
T cd01967 72 EKKLKKAIKEAYE-RFPPKAIFVYSTCPTG---LIGDDIEAVAKEASKELG---IPVIPVNCEGFRGVSQSLGHHIANDA 144 (406)
T ss_pred HHHHHHHHHHHHH-hCCCCEEEEECCCchh---hhccCHHHHHHHHHHhhC---CCEEEEeCCCeeCCcccHHHHHHHHH
Confidence 7777777765321 0122335666665332 122334444444333443 6888899774322 11223335555
Q ss_pred HHHHH---------HcCcEeEEeecCCChHHHHHHHHHHHhcCCCc
Q 017700 184 LVAMY---------EKGLVRAVGVSNYGPNQLVKIHDYLTARGVPL 220 (367)
Q Consensus 184 L~~l~---------~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~ 220 (367)
|-+.. +++.|.-||..++ +..+.++.+..+..|+.+
T Consensus 145 l~~~l~~~~~~~~~~~~~VNiig~~~~-~~d~~el~~lL~~~Gi~~ 189 (406)
T cd01967 145 ILDHLVGTKEPEEKTPYDVNIIGEYNI-GGDAWVIKPLLEELGIRV 189 (406)
T ss_pred HHHHhcCCCCcCCCCCCeEEEEecccc-chhHHHHHHHHHHcCCEE
Confidence 54332 3456888998765 345666666666666543
No 267
>COG4464 CapC Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=23.07 E-value=2.8e+02 Score=25.06 Aligned_cols=32 Identities=9% Similarity=-0.049 Sum_probs=25.3
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCEEeCCCCcCC
Q 017700 67 YQESMDSQLQQTFNLAVENGINLFDTADSYGT 98 (367)
Q Consensus 67 ~~~~~~~~a~~~l~~A~~~Gi~~~DTA~~Yg~ 98 (367)
.++.+.++..++++.|.+.|++-+=..++|-+
T Consensus 14 DGp~s~eesl~ml~~A~~qGvt~iVaTsHh~~ 45 (254)
T COG4464 14 DGPKSLEESLAMLREAVRQGVTKIVATSHHLH 45 (254)
T ss_pred CCCCcHHHHHHHHHHHHHcCceEEeecccccC
Confidence 34556789999999999999997766666654
No 268
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=23.04 E-value=5.2e+02 Score=26.16 Aligned_cols=102 Identities=11% Similarity=0.205 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhCCCcEEEEEeccCCCCC---CChhHHHHHHHHHHHHHc-CcEeE---------EeecCCChHHHHHHHH
Q 017700 145 VNACRASLARLQIEQIGIGQLHWSTANY---APPQELALWNGLVAMYEK-GLVRA---------VGVSNYGPNQLVKIHD 211 (367)
Q Consensus 145 ~~~l~~sL~~Lg~d~iDl~~lH~~~~~~---~~~~~~~~~~~L~~l~~~-G~ir~---------iGvS~~~~~~l~~~~~ 211 (367)
+..+-+.|.++|++.|++ |....+ ...-.+.-|+.|+.+++. ..++. +|..++..+.++..++
T Consensus 27 kl~Ia~~Ld~~Gv~~IE~----~ggatfd~~~~Fl~e~p~e~l~~l~~~~~~~~l~~l~r~~N~~G~~~~~dDvv~~fv~ 102 (467)
T PRK14041 27 MLPALEAFDRMGFYSMEV----WGGATFDVCVRFLNENPWERLKEIRKRLKNTKIQMLLRGQNLVGYRHYADDVVELFVK 102 (467)
T ss_pred HHHHHHHHHHcCCCEEEe----cCCccchhhhcccCCCHHHHHHHHHHhCCCCEEEEEeccccccCcccccchhhHHHHH
Q ss_pred HHHhcCCCceeEEeeecccccccchhhHHHHHHHcCCeEEEe
Q 017700 212 YLTARGVPLCSAQVQFSLLSMGENQLEIKNICDSLGIRLISY 253 (367)
Q Consensus 212 ~~~~~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~v~a~ 253 (367)
.+...|+ +++.+...+-+...-. ..+++++++|..+.+.
T Consensus 103 ~A~~~Gv--d~irif~~lnd~~n~~-~~i~~ak~~G~~v~~~ 141 (467)
T PRK14041 103 KVAEYGL--DIIRIFDALNDIRNLE-KSIEVAKKHGAHVQGA 141 (467)
T ss_pred HHHHCCc--CEEEEEEeCCHHHHHH-HHHHHHHHCCCEEEEE
No 269
>cd03317 NAAAR N-acylamino acid racemase (NAAAR), an octameric enzyme that catalyzes the racemization of N-acylamino acids. NAAARs act on a broad range of N-acylamino acids rather than amino acids. Enantiopure amino acids are of industrial interest as chiral building blocks for antibiotics, herbicides, and drugs. NAAAR is a member of the enolase superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=23.03 E-value=3.2e+02 Score=26.12 Aligned_cols=73 Identities=11% Similarity=0.010 Sum_probs=47.0
Q ss_pred HHHHHHHHHcCcE-eEEeecCCChHHHHHHHHHHHhcCCCceeEEeeecccccccchhhHHHHHHHcCCeEEEecCCCC
Q 017700 181 WNGLVAMYEKGLV-RAVGVSNYGPNQLVKIHDYLTARGVPLCSAQVQFSLLSMGENQLEIKNICDSLGIRLISYSPLGL 258 (367)
Q Consensus 181 ~~~L~~l~~~G~i-r~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~v~a~~pl~~ 258 (367)
++.+.+|+++-.+ -+.|=|.++...+..+++. -.++++|+..+.+---..-.++...|+.+|+.++..+....
T Consensus 217 ~~~~~~l~~~~~~pia~dEs~~~~~~~~~~~~~-----~~~d~~~ik~~~~GGit~~~~i~~~A~~~gi~~~~g~~~es 290 (354)
T cd03317 217 LIDHAELQKLLKTPICLDESIQSAEDARKAIEL-----GACKIINIKPGRVGGLTEALKIHDLCQEHGIPVWCGGMLES 290 (354)
T ss_pred HHHHHHHHhhcCCCEEeCCccCCHHHHHHHHHc-----CCCCEEEecccccCCHHHHHHHHHHHHHcCCcEEecCcccc
Confidence 5667777665432 3556667777777777654 34677887765542212223789999999999977655443
No 270
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=22.86 E-value=8.3e+02 Score=24.97 Aligned_cols=108 Identities=12% Similarity=0.026 Sum_probs=65.0
Q ss_pred ChHHHHHHHHHhhCCCCCCCCCcEEEEeeccCCCCCCChHH----------HHHHHHHHHhhhCCCcEEEEEeccCCCCC
Q 017700 103 GKSEKLLGKFISEIPGQKQVQNNIVIATKFAAYPWRLTPGQ----------FVNACRASLARLQIEQIGIGQLHWSTANY 172 (367)
Q Consensus 103 g~sE~~lG~al~~~~~~~~~R~~v~i~tK~~~~~~~~~~~~----------i~~~l~~sL~~Lg~d~iDl~~lH~~~~~~ 172 (367)
|--|.++..+-+.+.. ..+-++||++-+|.--.. -|.. ++-.-.+.-+||.+.|+|.+-
T Consensus 139 GTyeT~~~aark~f~~--~L~G~~~lTaGLGGMgGA-QPlA~~mag~v~i~vEvd~~ri~kR~~~gyld~~~-------- 207 (545)
T TIGR01228 139 GTYETFAELARQHFGG--SLKGKWVLTAGLGGMGGA-QPLAVTMNGGVSIAVEVDESRIDKRLETKYCDEQT-------- 207 (545)
T ss_pred cHHHHHHHHHHHhcCC--CCceeEEEEeCCCccccc-cHHHHHHcCceEEEEEECHHHHHHHHhcCcceeEc--------
Confidence 4467666666555543 357788888888753110 0000 001123344678888988521
Q ss_pred CChhHHHHHHHHHHHHHcCcEeEEeecCCChHHHHHHHHHHHhcCCCcee--EEeee
Q 017700 173 APPQELALWNGLVAMYEKGLVRAVGVSNYGPNQLVKIHDYLTARGVPLCS--AQVQF 227 (367)
Q Consensus 173 ~~~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~~--~q~~~ 227 (367)
. ..+++++..++.+++|+...||+-.--.+.++++.+. ++.|++ -|...
T Consensus 208 ~--~ldeal~~~~~a~~~~~~~SIg~~GNaadv~~~l~~r----~i~pDlvtDQTSa 258 (545)
T TIGR01228 208 D--SLDEALARAEEAKAEGKPISIGLLGNAAEVLPELLKR----GVVPDVVTDQTSA 258 (545)
T ss_pred C--CHHHHHHHHHHHHHcCCceEEEeeccHHHHHHHHHHc----CCCCCCcCCCCcc
Confidence 1 2356899999999999999999977555555655543 555444 45433
No 271
>PRK14466 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=22.71 E-value=7e+02 Score=24.10 Aligned_cols=96 Identities=9% Similarity=-0.018 Sum_probs=62.7
Q ss_pred EEEeccCCCCC--------CChhHHHHHHHHHHHHHcC--c--EeEEeec--CCChHHHHHHHHHHHhcCCCceeEEeee
Q 017700 162 IGQLHWSTANY--------APPQELALWNGLVAMYEKG--L--VRAVGVS--NYGPNQLVKIHDYLTARGVPLCSAQVQF 227 (367)
Q Consensus 162 l~~lH~~~~~~--------~~~~~~~~~~~L~~l~~~G--~--ir~iGvS--~~~~~~l~~~~~~~~~~~~~~~~~q~~~ 227 (367)
.+-||.+++.. .....+++++++.+..++. + +.|+=+. |.+.+++.++.+.++. .+..++-++|
T Consensus 210 avSLha~~~e~R~~i~P~~~~~~l~~l~~al~~y~~~~~rri~~Ey~Li~gvND~~e~a~~L~~ll~~--~~~~VNLIp~ 287 (345)
T PRK14466 210 AISLHSPFPEQRRELMPAEKAFSIKEIIDLLKNYDFSKQRRVSFEYIVFKGLNDSLKHAKELVKLLRG--IDCRVNLIRF 287 (345)
T ss_pred EEEcCCCCHHHHHHhcCCccCCCHHHHHHHHHHHHHhhCCEEEEEEEEeCCCCCCHHHHHHHHHHHcC--CCceEEEEec
Confidence 57899775421 1123466888888765433 2 3455453 5677788888888763 5678899999
Q ss_pred cccccc----cch---hhHHHHHHHcCCeEEEecCCCCc
Q 017700 228 SLLSMG----ENQ---LEIKNICDSLGIRLISYSPLGLG 259 (367)
Q Consensus 228 n~~~~~----~~~---~~l~~~~~~~gi~v~a~~pl~~G 259 (367)
|+.... +.. ..+.+..+++|+.+......|.-
T Consensus 288 Np~~~~~~~~~s~~~~~~F~~~L~~~gi~~tvR~s~G~d 326 (345)
T PRK14466 288 HAIPGVDLEGSDMARMEAFRDYLTSHGVFTTIRASRGED 326 (345)
T ss_pred CCCCCCCCcCCCHHHHHHHHHHHHHCCCcEEEeCCCCCc
Confidence 975331 111 35677788899999888777654
No 272
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=22.66 E-value=3.6e+02 Score=25.50 Aligned_cols=19 Identities=5% Similarity=0.111 Sum_probs=16.8
Q ss_pred hHHHHHHHcCCeEEEecCC
Q 017700 238 EIKNICDSLGIRLISYSPL 256 (367)
Q Consensus 238 ~l~~~~~~~gi~v~a~~pl 256 (367)
.+++.|+++||.|+||-.+
T Consensus 74 ~~I~eaHkrGlevHAW~~~ 92 (311)
T PF02638_consen 74 FMIEEAHKRGLEVHAWFRV 92 (311)
T ss_pred HHHHHHHHcCCEEEEEEEe
Confidence 7899999999999999743
No 273
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=22.55 E-value=5.6e+02 Score=22.89 Aligned_cols=68 Identities=12% Similarity=0.085 Sum_probs=53.1
Q ss_pred CChHHHHHHHHHHHhhhC--------------------------CCcEEEEEeccCCCCCCChhHHHHHHHHHHHHHcCc
Q 017700 139 LTPGQFVNACRASLARLQ--------------------------IEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKGL 192 (367)
Q Consensus 139 ~~~~~i~~~l~~sL~~Lg--------------------------~d~iDl~~lH~~~~~~~~~~~~~~~~~L~~l~~~G~ 192 (367)
..++.+++.+.+.|+..| ++..++++-..|..+.+|....++++.|+++-..|-
T Consensus 109 ~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~Gt 188 (223)
T COG2884 109 KPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGT 188 (223)
T ss_pred CCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCc
Confidence 378899999999999888 677888888888767777767778899999988887
Q ss_pred EeEEeecCCChHHHHH
Q 017700 193 VRAVGVSNYGPNQLVK 208 (367)
Q Consensus 193 ir~iGvS~~~~~~l~~ 208 (367)
.+=+++|+..-+..
T Consensus 189 --TVl~ATHd~~lv~~ 202 (223)
T COG2884 189 --TVLMATHDLELVNR 202 (223)
T ss_pred --EEEEEeccHHHHHh
Confidence 55567777655443
No 274
>PRK14462 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=22.45 E-value=7.2e+02 Score=24.12 Aligned_cols=95 Identities=11% Similarity=0.124 Sum_probs=60.9
Q ss_pred EeccCCCC----CCCh----hHHHHHHHHHHHH-HcCc---EeEEeecCC--ChHHHHHHHHHHHhcCCCceeEEeeecc
Q 017700 164 QLHWSTAN----YAPP----QELALWNGLVAMY-EKGL---VRAVGVSNY--GPNQLVKIHDYLTARGVPLCSAQVQFSL 229 (367)
Q Consensus 164 ~lH~~~~~----~~~~----~~~~~~~~L~~l~-~~G~---ir~iGvS~~--~~~~l~~~~~~~~~~~~~~~~~q~~~n~ 229 (367)
-||.+++. ..+. ..+++++++.++. +.|+ |+|+=+.++ +.++++++.+.++. .+..++-++||+
T Consensus 225 SLha~d~e~r~~l~pv~~~~~l~~ll~~l~~y~~~~~~~i~ieyvLI~GvNDs~e~a~~La~llk~--l~~~VnLIPyn~ 302 (356)
T PRK14462 225 SLHAVDDELRSELMPINKAYNIESIIDAVRKFPIDQRKRVMFEYLVIKDVNDDLKSAKKLVKLLNG--IKAKVNLILFNP 302 (356)
T ss_pred ECCCCCHHHHHHhCCCCccCCHHHHHHHHHHHHHHhCCeEEEEEEEECCCCCCHHHHHHHHHHHhh--cCcEEEEEeCCC
Confidence 48987642 1121 2245788887554 4554 577766544 56778888888764 456889999998
Q ss_pred cccc----cch---hhHHHHHHHcCCeEEEecCCCCcc
Q 017700 230 LSMG----ENQ---LEIKNICDSLGIRLISYSPLGLGM 260 (367)
Q Consensus 230 ~~~~----~~~---~~l~~~~~~~gi~v~a~~pl~~G~ 260 (367)
.... +.. ..+.+..+++|+.+......|.-+
T Consensus 303 ~~~~~~~~ps~e~i~~f~~~l~~~gi~vtvR~~~G~dI 340 (356)
T PRK14462 303 HEGSKFERPSLEDMIKFQDYLNSKGLLCTIRESKGLDI 340 (356)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCcEEEeCCCCCch
Confidence 7531 222 235566778899998887776543
No 275
>PRK09456 ?-D-glucose-1-phosphatase; Provisional
Probab=22.34 E-value=3.2e+02 Score=23.49 Aligned_cols=29 Identities=17% Similarity=0.070 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHcCcEeEEeecCCChHHHH
Q 017700 178 LALWNGLVAMYEKGLVRAVGVSNYGPNQLV 207 (367)
Q Consensus 178 ~~~~~~L~~l~~~G~ir~iGvS~~~~~~l~ 207 (367)
.++.+.|+.|+++|.--+| +||.....+.
T Consensus 87 ~g~~e~L~~l~~~g~~~~i-~Sn~~~~~~~ 115 (199)
T PRK09456 87 PEVIAIMHKLREQGHRVVV-LSNTNRLHTT 115 (199)
T ss_pred HHHHHHHHHHHhCCCcEEE-EcCCchhhHH
Confidence 4578999999999964444 6776554433
No 276
>PRK09358 adenosine deaminase; Provisional
Probab=22.27 E-value=6.7e+02 Score=23.69 Aligned_cols=19 Identities=11% Similarity=0.095 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHCCCCEEeC
Q 017700 74 QLQQTFNLAVENGINLFDT 92 (367)
Q Consensus 74 ~a~~~l~~A~~~Gi~~~DT 92 (367)
-+...+..+++.|++++|+
T Consensus 82 ~~~~~~~e~~~~Gvty~E~ 100 (340)
T PRK09358 82 LAFEYLEDAAADGVVYAEI 100 (340)
T ss_pred HHHHHHHHHHHcCCEEEEE
Confidence 4677778889999998764
No 277
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=22.21 E-value=3.9e+02 Score=26.61 Aligned_cols=117 Identities=10% Similarity=0.048 Sum_probs=59.6
Q ss_pred CCcCCCCCCChHHHHHHHHHhhCCCCCCCCCcEEEEeeccCCCCCCChHHHHHHHHHHHhhhCCCcEEEEEeccCCCCCC
Q 017700 94 DSYGTGRLNGKSEKLLGKFISEIPGQKQVQNNIVIATKFAAYPWRLTPGQFVNACRASLARLQIEQIGIGQLHWSTANYA 173 (367)
Q Consensus 94 ~~Yg~~~~~g~sE~~lG~al~~~~~~~~~R~~v~i~tK~~~~~~~~~~~~i~~~l~~sL~~Lg~d~iDl~~lH~~~~~~~ 173 (367)
-.||. |+-|-++|+..-+ ....+=++|.|-+-+.--+-+.+.+.+.+++-... ..-+.++.++.|+....
T Consensus 71 ~VfGg-------~~~L~~~I~~~~~-~~~P~~I~V~ttC~~eiIGDDi~~v~~~~~~e~p~--~~~~pvi~v~tpgf~g~ 140 (432)
T TIGR01285 71 TILGG-------DEHIEEAIDTLCQ-RNKPKAIGLLSTGLTETRGEDIARVVRQFREKHPQ--HKGTAVVTVNTPDFKGS 140 (432)
T ss_pred eEECc-------HHHHHHHHHHHHH-hcCCCEEEEeCCCcccccccCHHHHHHHHHhhccc--ccCCeEEEecCCCcCCc
Confidence 46775 6666666655321 01233466766654321111344444333322111 11356788887743321
Q ss_pred -ChhHHHHHHHHH-HHH--------HcCcEeEEeecCCChHHHHHHHHHHHhcCCCc
Q 017700 174 -PPQELALWNGLV-AMY--------EKGLVRAVGVSNYGPNQLVKIHDYLTARGVPL 220 (367)
Q Consensus 174 -~~~~~~~~~~L~-~l~--------~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~ 220 (367)
......++++|. .+. +.++|.-||-++..+..+.++.+..+..|+.+
T Consensus 141 ~~~G~~~a~~al~~~~~~~~~~~~~~~~~VNiig~~~~~~~d~~elk~lL~~~Gl~~ 197 (432)
T TIGR01285 141 LEDGYAAAVESIIEAWVPPAPARAQRNRRVNLLVGSLLTPGDIEELRRMVEAFGLKP 197 (432)
T ss_pred hHHHHHHHHHHHHHHHcccccccCCCCCeEEEEcCCCCCccCHHHHHHHHHHcCCce
Confidence 112222333332 222 15568888887776677788888777777665
No 278
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=22.03 E-value=6e+02 Score=23.02 Aligned_cols=13 Identities=8% Similarity=-0.082 Sum_probs=6.9
Q ss_pred hHHHHHHHcCCeE
Q 017700 238 EIKNICDSLGIRL 250 (367)
Q Consensus 238 ~l~~~~~~~gi~v 250 (367)
.+.+.++++||.+
T Consensus 137 ~l~~~a~~~gv~l 149 (284)
T PRK13210 137 WAVEQAAAAQVML 149 (284)
T ss_pred HHHHHHHHhCCEE
Confidence 4455555666543
No 279
>PF05378 Hydant_A_N: Hydantoinase/oxoprolinase N-terminal region; InterPro: IPR008040 This domain is found at the N terminus of the hydantoinase/oxoprolinase IPR002821 from INTERPRO family.
Probab=21.94 E-value=1.7e+02 Score=25.14 Aligned_cols=44 Identities=18% Similarity=0.262 Sum_probs=22.5
Q ss_pred hHHHHHHHHHHHhcCCCceeEEeeecccccccchhhHHHHHHHcC
Q 017700 203 PNQLVKIHDYLTARGVPLCSAQVQFSLLSMGENQLEIKNICDSLG 247 (367)
Q Consensus 203 ~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~~g 247 (367)
.++++++++.++..|+.-.++-.-|++.++..++ .+.+.+++.|
T Consensus 133 ~~~v~~~~~~l~~~gv~avAV~~~fS~~np~hE~-~v~eii~e~g 176 (176)
T PF05378_consen 133 EDEVREALRELKDKGVEAVAVSLLFSYRNPEHEQ-RVAEIIREEG 176 (176)
T ss_pred HHHHHHHHHHHHhCCCCEEEEECccCCCCHHHHH-HHHHHHHhcC
Confidence 3445555554444444444455555665555444 5555555543
No 280
>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]
Probab=21.87 E-value=7.7e+02 Score=24.22 Aligned_cols=49 Identities=20% Similarity=0.324 Sum_probs=29.2
Q ss_pred HHHHHHHHHcCcEeEEeecC--------CChHHHHHHHHHHHhcCCCceeEEeeecc
Q 017700 181 WNGLVAMYEKGLVRAVGVSN--------YGPNQLVKIHDYLTARGVPLCSAQVQFSL 229 (367)
Q Consensus 181 ~~~L~~l~~~G~ir~iGvS~--------~~~~~l~~~~~~~~~~~~~~~~~q~~~n~ 229 (367)
++.||+...++.++-+=++| |+.++|+++.+.|+++++.+..-.++--+
T Consensus 147 ~~~LE~~~~~~~vkl~iLCnPHNP~Grvwt~eeL~~i~elc~kh~v~VISDEIHaDl 203 (388)
T COG1168 147 FDALEKAFVDERVKLFILCNPHNPTGRVWTKEELRKIAELCLRHGVRVISDEIHADL 203 (388)
T ss_pred HHHHHHHHhcCCccEEEEeCCCCCCCccccHHHHHHHHHHHHHcCCEEEeecccccc
Confidence 56777777777655444443 33466777777777776655555554443
No 281
>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E. HAD subfamilies caused by an overly broad single model.
Probab=21.83 E-value=3.9e+02 Score=21.56 Aligned_cols=67 Identities=13% Similarity=-0.036 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHcCcEeEEeecCCChHHHHHHHHHHHhcCCCceeEEeeecccccccchhhHHHHHHHcCCe
Q 017700 179 ALWNGLVAMYEKGLVRAVGVSNYGPNQLVKIHDYLTARGVPLCSAQVQFSLLSMGENQLEIKNICDSLGIR 249 (367)
Q Consensus 179 ~~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~ 249 (367)
++.+.|+.|+++|.--+| +||.....+....+.. ....+..+-..-... ..+....+...|++.|+.
T Consensus 68 g~~e~l~~L~~~g~~~~i-~T~~~~~~~~~~~~~~--l~~~f~~i~~~~~~~-~Kp~~~~~~~~~~~~~~~ 134 (154)
T TIGR01549 68 GAADLLKRLKEAGIKLGI-ISNGSLRAQKLLLRKH--LGDYFDLILGSDEFG-AKPEPEIFLAALESLGLP 134 (154)
T ss_pred CHHHHHHHHHHCcCeEEE-EeCCchHHHHHHHHHH--HHhcCcEEEecCCCC-CCcCHHHHHHHHHHcCCC
Confidence 478999999999863333 6776666665555542 111222222222222 333333677778877774
No 282
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=21.73 E-value=2.8e+02 Score=28.13 Aligned_cols=52 Identities=17% Similarity=0.068 Sum_probs=37.4
Q ss_pred HHhhhCCCcEEEEEeccCCCCCCChhHHHHHHHHHHHHHcCcEeEEeecCCChHH
Q 017700 151 SLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKGLVRAVGVSNYGPNQ 205 (367)
Q Consensus 151 sL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~ 205 (367)
.|+.|=. -.|++.|..|..-.+|.+.+++++.|..|+++|+ .|=+-+|.-.+
T Consensus 151 IlKaLyr-~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~--tIi~ITHKL~E 202 (501)
T COG3845 151 ILKALYR-GARLLILDEPTAVLTPQEADELFEILRRLAAEGK--TIIFITHKLKE 202 (501)
T ss_pred HHHHHhc-CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCC--EEEEEeccHHH
Confidence 3444432 5789999988766778888999999999999999 33344444333
No 283
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=21.71 E-value=4e+02 Score=24.39 Aligned_cols=46 Identities=15% Similarity=0.109 Sum_probs=34.3
Q ss_pred cEEEEEeccCCCCCCChhHHHHHHHHHHHHHcCcEeEEeecCCChHHH
Q 017700 159 QIGIGQLHWSTANYAPPQELALWNGLVAMYEKGLVRAVGVSNYGPNQL 206 (367)
Q Consensus 159 ~iDl~~lH~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~l 206 (367)
..+++++..|....++.....+++.|.+++++|. .|=++.|..+.+
T Consensus 154 ~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~--til~~tH~~~~~ 199 (274)
T PRK13644 154 EPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGK--TIVYITHNLEEL 199 (274)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCC--EEEEEecCHHHH
Confidence 5688888888666556566778899999988876 466777776654
No 284
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=21.67 E-value=4.2e+02 Score=24.50 Aligned_cols=94 Identities=7% Similarity=0.043 Sum_probs=42.7
Q ss_pred ChHHHHHHHHHHHhhhCCCcEEEEEeccCCCCCCChhH-HHHHHHHHHHHHcCcEeEEeecCCChHHHHHHHHHHH-hcC
Q 017700 140 TPGQFVNACRASLARLQIEQIGIGQLHWSTANYAPPQE-LALWNGLVAMYEKGLVRAVGVSNYGPNQLVKIHDYLT-ARG 217 (367)
Q Consensus 140 ~~~~i~~~l~~sL~~Lg~d~iDl~~lH~~~~~~~~~~~-~~~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~-~~~ 217 (367)
+.+...+.++ .|.+-|.|.|-+-+=+. +|..+ .-+-++-.+..+.|- +...+-++.+..+ ...
T Consensus 22 ~~~~~~~~~~-~l~~~GaD~iEiGiPfS-----DP~ADGpvIq~A~~rAL~~G~---------~~~~~~~~~~~ir~~~~ 86 (259)
T PF00290_consen 22 DLETTLEILK-ALEEAGADIIEIGIPFS-----DPVADGPVIQKASQRALKNGF---------TLEKIFELVKEIRKKEP 86 (259)
T ss_dssp SHHHHHHHHH-HHHHTTBSSEEEE--SS-----SCTTSSHHHHHHHHHHHHTT-----------HHHHHHHHHHHHHHCT
T ss_pred CHHHHHHHHH-HHHHcCCCEEEECCCCC-----CCCCCCHHHHHHHHHHHHCCC---------CHHHHHHHHHHHhccCC
Confidence 4555444443 45556766666655443 22211 123445555555554 3444333333333 222
Q ss_pred CCceeEEeeecccccccchhhHHHHHHHcCCe
Q 017700 218 VPLCSAQVQFSLLSMGENQLEIKNICDSLGIR 249 (367)
Q Consensus 218 ~~~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~ 249 (367)
-.+.+.+.-||++.+...+ .+++.|++.|+.
T Consensus 87 ~~pivlm~Y~N~i~~~G~e-~F~~~~~~aGvd 117 (259)
T PF00290_consen 87 DIPIVLMTYYNPIFQYGIE-RFFKEAKEAGVD 117 (259)
T ss_dssp SSEEEEEE-HHHHHHH-HH-HHHHHHHHHTEE
T ss_pred CCCEEEEeeccHHhccchH-HHHHHHHHcCCC
Confidence 2355666666765433332 566667766653
No 285
>TIGR01502 B_methylAsp_ase methylaspartate ammonia-lyase. This model describes methylaspartate ammonia-lyase, also called beta-methylaspartase (EC 4.3.1.2). It follows methylaspartate mutase (composed of S and E subunits) in one of several possible pathways of glutamate fermentation.
Probab=21.65 E-value=4.7e+02 Score=25.92 Aligned_cols=71 Identities=7% Similarity=-0.069 Sum_probs=45.4
Q ss_pred HHHHHHHHHc------CcEeEEeecCCChHHHHHHHHHHHhcCCCceeEEeeecccccccchhhHHHHHHHcCCeEEEec
Q 017700 181 WNGLVAMYEK------GLVRAVGVSNYGPNQLVKIHDYLTARGVPLCSAQVQFSLLSMGENQLEIKNICDSLGIRLISYS 254 (367)
Q Consensus 181 ~~~L~~l~~~------G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~v~a~~ 254 (367)
++.+.+|+++ ..=-..+=|.++.+.+..+++. --.+++|+..+-+---.+-.++.++|+.+||.++..+
T Consensus 281 ~e~la~Lr~~~~~~~~~vPI~aDEs~~t~~d~~~~i~~-----~a~d~v~iK~~k~GGIt~a~kia~lA~~~Gi~~~~g~ 355 (408)
T TIGR01502 281 IEAMADLRAELDGRGVDAEIVADEWCNTVEDVKFFTDA-----KAGHMVQIKTPDVGGVNNIARAIMYCKANGMGAYVGG 355 (408)
T ss_pred HHHHHHHHHHhhcCCCCceEEecCCCCCHHHHHHHHHh-----CCCCEEEeCccccCCHHHHHHHHHHHHHcCCEEEEeC
Confidence 5666666655 3333444555666777666654 3467777776654322233478999999999999876
Q ss_pred CC
Q 017700 255 PL 256 (367)
Q Consensus 255 pl 256 (367)
..
T Consensus 356 ~~ 357 (408)
T TIGR01502 356 TC 357 (408)
T ss_pred CC
Confidence 65
No 286
>PRK10551 phage resistance protein; Provisional
Probab=21.65 E-value=5.5e+02 Score=26.19 Aligned_cols=100 Identities=12% Similarity=0.188 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHhhhCCCcEEEEE-eccCCCCCCChhHHHHHHHHHHHHHcCcEeEEeecCCChHH--HHHHHHHHHhcCC
Q 017700 142 GQFVNACRASLARLQIEQIGIGQ-LHWSTANYAPPQELALWNGLVAMYEKGLVRAVGVSNYGPNQ--LVKIHDYLTARGV 218 (367)
Q Consensus 142 ~~i~~~l~~sL~~Lg~d~iDl~~-lH~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~--l~~~~~~~~~~~~ 218 (367)
+.+...+.+.++.++.+..-+.+ +... . ........+.++.|++.|. .|.+.+|+... +..+.. .
T Consensus 364 ~~f~~~l~~~l~~~~~~~~~LvlEItE~--~--~~~~~~~~~~l~~Lr~~G~--~ialDDFGtg~ssl~~L~~------l 431 (518)
T PRK10551 364 DSFKADVQRLLASLPADHFQIVLEITER--D--MVQEEEATKLFAWLHSQGI--EIAIDDFGTGHSALIYLER------F 431 (518)
T ss_pred chHHHHHHHHHHhCCCCcceEEEEEech--H--hcCCHHHHHHHHHHHHCCC--EEEEECCCCCchhHHHHHh------C
Confidence 44566677777777765433222 2211 1 1112335678899999999 78888776433 344333 5
Q ss_pred CceeEEeeecccccccch-------hhHHHHHHHcCCeEEEe
Q 017700 219 PLCSAQVQFSLLSMGENQ-------LEIKNICDSLGIRLISY 253 (367)
Q Consensus 219 ~~~~~q~~~n~~~~~~~~-------~~l~~~~~~~gi~v~a~ 253 (367)
+++.+-+.-+....-..+ ..+++.|++.|+.+++=
T Consensus 432 ~vD~lKID~~fv~~i~~~~~~~~il~~ii~la~~lgi~vVAE 473 (518)
T PRK10551 432 TLDYLKIDRGFIQAIGTETVTSPVLDAVLTLAKRLNMLTVAE 473 (518)
T ss_pred CCCEEEECHHHHhhhccChHHHHHHHHHHHHHHHCCCEEEEE
Confidence 777777776554322111 36899999999999884
No 287
>COG5310 Homospermidine synthase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=21.64 E-value=6.2e+02 Score=24.48 Aligned_cols=147 Identities=12% Similarity=0.130 Sum_probs=83.5
Q ss_pred HHHHHHHHCCCCEEeCCCCcCCCCCCChHHHHHHHHHhhCCCCCCCCCcEEEEeeccCCCCCCChHHHHHHHHHHHhhhC
Q 017700 77 QTFNLAVENGINLFDTADSYGTGRLNGKSEKLLGKFISEIPGQKQVQNNIVIATKFAAYPWRLTPGQFVNACRASLARLQ 156 (367)
Q Consensus 77 ~~l~~A~~~Gi~~~DTA~~Yg~~~~~g~sE~~lG~al~~~~~~~~~R~~v~i~tK~~~~~~~~~~~~i~~~l~~sL~~Lg 156 (367)
+..+..-+.||+|+-++-.-.+ -..+|+..|+.- .-+.++|---+ +.+.-+ +-+-+++++
T Consensus 51 k~~k~~~~~girfV~e~it~~N------yk~vL~pll~~~-----~gqgf~vnLSv-----d~~s~D----lmr~crk~~ 110 (481)
T COG5310 51 KDRKILDERGIRFVQEAITRDN------YKDVLKPLLKGV-----GGQGFCVNLSV-----DTSSLD----LMRLCRKHG 110 (481)
T ss_pred HHHHHHHhhhhHHHHHhcChhh------HHHHHHHHhhcC-----CCceEEEEeEe-----ccchhH----HHHHHHHcC
Confidence 5566667899999977655433 456777777662 33445544433 223333 345667899
Q ss_pred CCcEEEEEeccCCCCCCCh--hHHHHHHHHHHHHHcCcEeEEe----ecCCChH--HH-----HHHHHHHHhcCCCceeE
Q 017700 157 IEQIGIGQLHWSTANYAPP--QELALWNGLVAMYEKGLVRAVG----VSNYGPN--QL-----VKIHDYLTARGVPLCSA 223 (367)
Q Consensus 157 ~d~iDl~~lH~~~~~~~~~--~~~~~~~~L~~l~~~G~ir~iG----vS~~~~~--~l-----~~~~~~~~~~~~~~~~~ 223 (367)
+=|||-+.=-|....++.. ...+.--+|++.+-+-|-|..| ||.++++ -+ +.+++.+...+.++..-
T Consensus 111 vLYidTvVEpW~gfyfDa~adn~artnyaLRet~lrEk~r~pgg~TaVs~cGANPGmvswFVKqaLvdlAad~~ld~~ep 190 (481)
T COG5310 111 VLYIDTVVEPWLGFYFDAQADNAARTNYALRETVLREKRRNPGGPTAVSTCGANPGMVSWFVKQALVDLAADLGLDFEEP 190 (481)
T ss_pred eEEEeeeeccccccchhhhhhhhhhhhHHHHHHHHHHhccCCCCCeeeeecCCCchHHHHHHHHHHHHHHHHhCcCccCC
Confidence 9999998888874332221 1112234566555555555555 6666542 12 34555555555443221
Q ss_pred EeeecccccccchhhHHHHHHHcCCeEE
Q 017700 224 QVQFSLLSMGENQLEIKNICDSLGIRLI 251 (367)
Q Consensus 224 q~~~n~~~~~~~~~~l~~~~~~~gi~v~ 251 (367)
. ..++.+....+++.||..|
T Consensus 191 -------~-~ddr~gwAkLmkK~GVkgi 210 (481)
T COG5310 191 -------A-QDDREGWAKLMKKAGVKGI 210 (481)
T ss_pred -------c-chhhHHHHHHHHHcCCceE
Confidence 1 1223478888899988765
No 288
>PF09989 DUF2229: CoA enzyme activase uncharacterised domain (DUF2229); InterPro: IPR018709 Proteins containing this domain include various bacterial hypothetical proteins, as well as CoA enzyme activases. The exact function of this domain has not, as yet, been defined.
Probab=21.59 E-value=2.7e+02 Score=24.91 Aligned_cols=34 Identities=18% Similarity=0.187 Sum_probs=27.8
Q ss_pred CceeEEeeecccccccchhhHHHHHHHcCCeEEEe
Q 017700 219 PLCSAQVQFSLLSMGENQLEIKNICDSLGIRLISY 253 (367)
Q Consensus 219 ~~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~v~a~ 253 (367)
.+.+.=-+||++|+.... ++.+..++.|+.|+..
T Consensus 185 ~Ivl~GrpY~~~D~~in~-~I~~~l~~~G~~vit~ 218 (221)
T PF09989_consen 185 AIVLLGRPYNIYDPFINM-GIPDKLRSLGVPVITE 218 (221)
T ss_pred eEEEEcCCCcCCCcccCC-chHHHHHHCCCeeeCc
Confidence 466677788888887776 8999999999999864
No 289
>PRK03031 rnpA ribonuclease P; Reviewed
Probab=21.47 E-value=3.9e+02 Score=21.34 Aligned_cols=65 Identities=15% Similarity=0.079 Sum_probs=41.2
Q ss_pred CCCcEEEEeeccCCCCCCChHHHHHHHHHHHhhhCC---CcEEEEEeccCCCCCCChhHHHHHHHHHHHHHc
Q 017700 122 VQNNIVIATKFAAYPWRLTPGQFVNACRASLARLQI---EQIGIGQLHWSTANYAPPQELALWNGLVAMYEK 190 (367)
Q Consensus 122 ~R~~v~i~tK~~~~~~~~~~~~i~~~l~~sL~~Lg~---d~iDl~~lH~~~~~~~~~~~~~~~~~L~~l~~~ 190 (367)
.|=-+.|+-|++.. ......|++.+.+.++.+.. ...|++++-.+... .....++.+.|..|.++
T Consensus 47 ~R~G~~VsKK~~~~--AV~RNriKR~lRe~~R~~~~~l~~g~diVvi~r~~~~--~~~~~~l~~~l~~ll~k 114 (122)
T PRK03031 47 TRFGISISQKVSKK--AVVRNRIKRQIRAALRQLLPRIAPGWDLVIIVKPTAA--ECNYEQFLQELEQLLIQ 114 (122)
T ss_pred cEEEEEEecccccc--hhhhhHHHHHHHHHHHHhhhccCCCceEEEEECCCcc--cCCHHHHHHHHHHHHHH
Confidence 34445666675532 12577788888888876642 36899999987433 33345577777766654
No 290
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=21.28 E-value=7.3e+02 Score=23.74 Aligned_cols=164 Identities=11% Similarity=0.050 Sum_probs=80.8
Q ss_pred CCHHHHHHHHHHHHHCCCCEEeCC---------CCcCCCCCCChHHHHHHHHHhhCCCCCCCCCcEEEEeeccCCCCCCC
Q 017700 70 SMDSQLQQTFNLAVENGINLFDTA---------DSYGTGRLNGKSEKLLGKFISEIPGQKQVQNNIVIATKFAAYPWRLT 140 (367)
Q Consensus 70 ~~~~~a~~~l~~A~~~Gi~~~DTA---------~~Yg~~~~~g~sE~~lG~al~~~~~~~~~R~~v~i~tK~~~~~~~~~ 140 (367)
.+.++..++++..-+.|+..++.+ -.||.+. -..++.+.+..+.. .+.++.+..- +....
T Consensus 21 f~~~~~~~ia~~Ld~aGV~~IEvg~g~gl~g~s~~~G~~~--~~~~e~i~~~~~~~-----~~~~~~~ll~----pg~~~ 89 (333)
T TIGR03217 21 FTIEQVRAIAAALDEAGVDAIEVTHGDGLGGSSFNYGFSA--HTDLEYIEAAADVV-----KRAKVAVLLL----PGIGT 89 (333)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCCCCCccccCCCCC--CChHHHHHHHHHhC-----CCCEEEEEec----cCccC
Confidence 567899999999999999999984 2333211 12345565555542 3333332221 11113
Q ss_pred hHHHHHHHHHHHhhhCCCcEEEEEeccCCCCCCChhHHHHHHHHHHHHHcCcEeEEeecC---CChHHHHHHHHHHHhcC
Q 017700 141 PGQFVNACRASLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKGLVRAVGVSN---YGPNQLVKIHDYLTARG 217 (367)
Q Consensus 141 ~~~i~~~l~~sL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvS~---~~~~~l~~~~~~~~~~~ 217 (367)
.++++.+. ..|+|.+-+.. |.- . .+.+.+.++..|+.|.--.+.+.. ++++.+.+..+.+...|
T Consensus 90 ~~dl~~a~-----~~gvd~iri~~-~~~-----e--~d~~~~~i~~ak~~G~~v~~~l~~s~~~~~e~l~~~a~~~~~~G 156 (333)
T TIGR03217 90 VHDLKAAY-----DAGARTVRVAT-HCT-----E--ADVSEQHIGMARELGMDTVGFLMMSHMTPPEKLAEQAKLMESYG 156 (333)
T ss_pred HHHHHHHH-----HCCCCEEEEEe-ccc-----h--HHHHHHHHHHHHHcCCeEEEEEEcccCCCHHHHHHHHHHHHhcC
Confidence 44444433 33666666443 422 1 123567777888888644443322 34455544444444333
Q ss_pred CCceeEEeeecccccccch-hhHHHHHHHc-C----CeEEEecCCCCc
Q 017700 218 VPLCSAQVQFSLLSMGENQ-LEIKNICDSL-G----IRLISYSPLGLG 259 (367)
Q Consensus 218 ~~~~~~q~~~n~~~~~~~~-~~l~~~~~~~-g----i~v~a~~pl~~G 259 (367)
. +.+-+.=+.-...+.+ .+++...+++ + |++.++.-++.+
T Consensus 157 a--~~i~i~DT~G~~~P~~v~~~v~~l~~~l~~~i~ig~H~HnnlGla 202 (333)
T TIGR03217 157 A--DCVYIVDSAGAMLPDDVRDRVRALKAVLKPETQVGFHAHHNLSLA 202 (333)
T ss_pred C--CEEEEccCCCCCCHHHHHHHHHHHHHhCCCCceEEEEeCCCCchH
Confidence 2 2222222221111111 2445555433 2 556666666655
No 291
>cd08557 PI-PLCc_bacteria_like Catalytic domain of bacterial phosphatidylinositol-specific phospholipase C and similar proteins. This subfamily corresponds to the catalytic domain present in bacterial phosphatidylinositol-specific phospholipase C (PI-PLC, EC 4.6.1.13) and their sequence homologs found in eukaryota. Bacterial PI-PLCs participate in Ca2+-independent PI metabolism, hydrolyzing the membrane lipid phosphatidylinositol (PI) to produce phosphorylated myo-inositol and diacylglycerol (DAG). Although their precise physiological function remains unclear, bacterial PI-PLCs may function as virulence factors in some pathogenic bacteria. Bacterial PI-PLCs contain a single TIM-barrel type catalytic domain. Its catalytic mechanism is based on general base and acid catalysis utilizing two well conserved histidines, and consists of two steps, a phosphotransfer and a phosphodiesterase reaction. Eukaryotic homologs in this family are named as phosphatidylinositol-specific phospholipase C X
Probab=21.28 E-value=2e+02 Score=26.04 Aligned_cols=19 Identities=16% Similarity=0.419 Sum_probs=15.0
Q ss_pred HHHHHHHCCCCEEeCCCCc
Q 017700 78 TFNLAVENGINLFDTADSY 96 (367)
Q Consensus 78 ~l~~A~~~Gi~~~DTA~~Y 96 (367)
-|...++.|||+||-=..|
T Consensus 42 ~i~~QL~~GiR~~dlr~~~ 60 (271)
T cd08557 42 SITDQLDAGVRYLDLRVAY 60 (271)
T ss_pred CHHHHHhcCceEEEEEeee
Confidence 4778899999999965544
No 292
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=21.28 E-value=6.7e+02 Score=23.30 Aligned_cols=29 Identities=7% Similarity=0.059 Sum_probs=21.5
Q ss_pred CCHHHHHHHHHHHHH-CCCCEEeCCCC-cCC
Q 017700 70 SMDSQLQQTFNLAVE-NGINLFDTADS-YGT 98 (367)
Q Consensus 70 ~~~~~a~~~l~~A~~-~Gi~~~DTA~~-Yg~ 98 (367)
.+.++-.++++..++ .|++.++.... ...
T Consensus 16 ~s~e~K~~i~~~L~~~~Gv~~IEvg~~~~s~ 46 (280)
T cd07945 16 FSPSEKLNIAKILLQELKVDRIEVASARVSE 46 (280)
T ss_pred cCHHHHHHHHHHHHHHhCCCEEEecCCCCCH
Confidence 566888888888654 49999998754 443
No 293
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=21.25 E-value=6.4e+02 Score=23.05 Aligned_cols=30 Identities=17% Similarity=0.230 Sum_probs=22.7
Q ss_pred CCCCHHHHHHHHHHHHHCCCCEEeCCCCcC
Q 017700 68 QESMDSQLQQTFNLAVENGINLFDTADSYG 97 (367)
Q Consensus 68 ~~~~~~~a~~~l~~A~~~Gi~~~DTA~~Yg 97 (367)
+.++.+...+.++..++.|++-+-..-.-|
T Consensus 13 g~iD~~~~~~~i~~l~~~Gv~gi~~~GstG 42 (281)
T cd00408 13 GEVDLDALRRLVEFLIEAGVDGLVVLGTTG 42 (281)
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEECCCCc
Confidence 457778888999999999998876554444
No 294
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=21.20 E-value=5.9e+02 Score=22.60 Aligned_cols=150 Identities=9% Similarity=-0.028 Sum_probs=70.2
Q ss_pred CCHHHHHHHHHHHHHCCCCEEeCCCCcCCCCCCChHHHHHHHHHhhCCCCCCCCCcEEEEeeccCCCCCCChHHHHHHHH
Q 017700 70 SMDSQLQQTFNLAVENGINLFDTADSYGTGRLNGKSEKLLGKFISEIPGQKQVQNNIVIATKFAAYPWRLTPGQFVNACR 149 (367)
Q Consensus 70 ~~~~~a~~~l~~A~~~Gi~~~DTA~~Yg~~~~~g~sE~~lG~al~~~~~~~~~R~~v~i~tK~~~~~~~~~~~~i~~~l~ 149 (367)
.+.+++.++++.|++.|+.-.|+- ++.+-.++....+ ...+.++++.-=. +..+-++..++
T Consensus 12 ~D~~~~~~~l~~al~~~~~~~~ii------------~~~l~p~m~~vG~-~w~~gei~vaqe~------~as~~~~~~l~ 72 (213)
T cd02069 12 GIRDGIEEDTEEARQQYARPLEII------------NGPLMDGMKVVGD-LFGAGKMFLPQVL------KSARVMKAAVA 72 (213)
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHH------------HHHHHHHHHHHHH-HHccCCCcHHHHH------HHHHHHHHHHH
Confidence 356899999999999986544321 2223333322110 0133444443221 12333444444
Q ss_pred HH---HhhhCC---CcEEEEEeccCCCCCCChhHHHHHHHHHHHHHcCc-EeEEeecCCChHHHHHHHHHHHhcCCCcee
Q 017700 150 AS---LARLQI---EQIGIGQLHWSTANYAPPQELALWNGLVAMYEKGL-VRAVGVSNYGPNQLVKIHDYLTARGVPLCS 222 (367)
Q Consensus 150 ~s---L~~Lg~---d~iDl~~lH~~~~~~~~~~~~~~~~~L~~l~~~G~-ir~iGvS~~~~~~l~~~~~~~~~~~~~~~~ 222 (367)
.. +..... +.-- +++-.+..+...+ +..=.-.-|+..|. |-++|... +++.+...... ..+++
T Consensus 73 ~l~~~l~~~~~~~~~~~~-vvl~t~~gd~Hdi---G~~iv~~~l~~~G~~Vi~LG~~v-p~e~~v~~~~~-----~~~~~ 142 (213)
T cd02069 73 YLEPYMEKEKGENSSKGK-IVLATVKGDVHDI---GKNLVGVILSNNGYEVIDLGVMV-PIEKILEAAKE-----HKADI 142 (213)
T ss_pred HHHHHHhhccccCCCCCe-EEEEeCCCchhHH---HHHHHHHHHHhCCCEEEECCCCC-CHHHHHHHHHH-----cCCCE
Confidence 44 222221 1122 2233332222222 22222334566775 67788644 44444333332 45666
Q ss_pred EEeeecccccccchhhHHHHHHHcCC
Q 017700 223 AQVQFSLLSMGENQLEIKNICDSLGI 248 (367)
Q Consensus 223 ~q~~~n~~~~~~~~~~l~~~~~~~gi 248 (367)
+.+....-.....-.++++.+++.|.
T Consensus 143 V~lS~~~~~~~~~~~~~i~~L~~~~~ 168 (213)
T cd02069 143 IGLSGLLVPSLDEMVEVAEEMNRRGI 168 (213)
T ss_pred EEEccchhccHHHHHHHHHHHHhcCC
Confidence 65555443333333467777777764
No 295
>cd01977 Nitrogenase_VFe_alpha Nitrogenase_VFe_alpha -like: Nitrogenase VFe protein, alpha subunit like. This group contains proteins similar to the alpha subunits of, the VFe protein of the vanadium-dependent (V-) nitrogenase and the FeFe protein of the iron only (Fe-) nitrogenase Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V- and Fe- nitrogenases there is a molybdenum (Mo)-dependent nitrogenase which is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha sub
Probab=21.17 E-value=7.9e+02 Score=24.13 Aligned_cols=116 Identities=14% Similarity=0.105 Sum_probs=59.6
Q ss_pred eCCCCcCCCCCCChHHHHHHHHHhhCCCCCCCC-CcEEEEeeccCCCCCCChHHHHHHHHHHHhhhCCCcEEEEEeccCC
Q 017700 91 DTADSYGTGRLNGKSEKLLGKFISEIPGQKQVQ-NNIVIATKFAAYPWRLTPGQFVNACRASLARLQIEQIGIGQLHWST 169 (367)
Q Consensus 91 DTA~~Yg~~~~~g~sE~~lG~al~~~~~~~~~R-~~v~i~tK~~~~~~~~~~~~i~~~l~~sL~~Lg~d~iDl~~lH~~~ 169 (367)
++.-.||. |+-|-++|+..-+ ..++ +=++|.|-+... +--+++..-+++.-++.+ .++++.+|.|+
T Consensus 64 E~d~VfGg-------~~~L~~aI~~~~~-~~p~p~~i~V~~tc~~~---liGdDi~~v~~~~~~~~~--~~~vi~v~tpg 130 (415)
T cd01977 64 ESHVVFGG-------EKKLKKNIIEAFK-EFPDIKRMTVYTTCTTA---LIGDDIKAVAKEVMEELP--DVDIFVCNAPG 130 (415)
T ss_pred ccceeecc-------HHHHHHHHHHHHH-hCCCCcEEEEECCCchh---hhcCCHHHHHHHHHHhcC--CCeEEEEeCCC
Confidence 34456775 6677777765422 0122 226677766432 123344444444333433 26799999875
Q ss_pred CCCCCh--hHHHHHH-HHHHHH--------HcCcEeEEeecCCChHHHHHHHHHHHhcCCCc
Q 017700 170 ANYAPP--QELALWN-GLVAMY--------EKGLVRAVGVSNYGPNQLVKIHDYLTARGVPL 220 (367)
Q Consensus 170 ~~~~~~--~~~~~~~-~L~~l~--------~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~ 220 (367)
...... ....+.. .++.+. +++.|.-||-.++ ...++++.+..+..|+.+
T Consensus 131 f~g~~~~~G~~~a~~al~~~l~~~~~~~~~~~~~VNliG~~~~-~~d~~ei~~lL~~~Gl~v 191 (415)
T cd01977 131 FAGPSQSKGHHVLNIAWINQKVGTVEPEITSDYTINYIGDYNI-QGDTEVLQKYFERMGIQV 191 (415)
T ss_pred cCCcchhHHHHHHHHHHHHHhhCcCCcCcCCCCcEEEEccCCC-cccHHHHHHHHHHcCCeE
Confidence 322111 1111222 233333 2467999985443 444666777766666654
No 296
>PRK03459 rnpA ribonuclease P; Reviewed
Probab=21.16 E-value=4.2e+02 Score=21.27 Aligned_cols=64 Identities=11% Similarity=-0.029 Sum_probs=41.3
Q ss_pred CCCcEEEEeeccCCCCCCChHHHHHHHHHHHhhhCCC---cEEEEEeccCCCCCCChhHHHHHHHHHHHHHc
Q 017700 122 VQNNIVIATKFAAYPWRLTPGQFVNACRASLARLQIE---QIGIGQLHWSTANYAPPQELALWNGLVAMYEK 190 (367)
Q Consensus 122 ~R~~v~i~tK~~~~~~~~~~~~i~~~l~~sL~~Lg~d---~iDl~~lH~~~~~~~~~~~~~~~~~L~~l~~~ 190 (367)
.|=-+.|+-|+|... ....+++-+.++.+.+..+ -.|++++-.+... .....++.+.|+.+.+.
T Consensus 48 ~R~G~~VsKKvG~AV---~RNRiKR~lRe~~R~~~~~l~~g~D~Viiar~~~~--~~~~~~l~~~l~~ll~k 114 (122)
T PRK03459 48 PRFGLVVSKAVGNAV---IRHRVSRRLRHICADIVDQVPETHHVVIRALPGAA--TASSAELERDVRAGLGK 114 (122)
T ss_pred CEEEEEEeeeccchh---HHHHHHHHHHHHHHHhhhccCCCcEEEEEECcccc--cCCHHHHHHHHHHHHHH
Confidence 455678888887532 5677888888888777653 4699999887432 22334455666655443
No 297
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=20.99 E-value=8.8e+02 Score=24.57 Aligned_cols=162 Identities=14% Similarity=0.151 Sum_probs=82.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCEEeCCCCcCCCCCCChHHHHHHHHHhhCCCCCCCCCcEEEEeeccCCCCCCChHHH
Q 017700 65 WGYQESMDSQLQQTFNLAVENGINLFDTADSYGTGRLNGKSEKLLGKFISEIPGQKQVQNNIVIATKFAAYPWRLTPGQF 144 (367)
Q Consensus 65 ~g~~~~~~~~a~~~l~~A~~~Gi~~~DTA~~Yg~~~~~g~sE~~lG~al~~~~~~~~~R~~v~i~tK~~~~~~~~~~~~i 144 (367)
.|+...+++-....++.|.++||..|=..+.-.. .-..+..+. +.++.. ..-.+.|+-...+ .++.+.+
T Consensus 97 vgy~~ypddvv~~fv~~a~~~Gidi~Rifd~lnd---~~n~~~ai~-~ak~~G----~~~~~~i~yt~sp---~~t~~y~ 165 (468)
T PRK12581 97 LGYRHYADDIVDKFISLSAQNGIDVFRIFDALND---PRNIQQALR-AVKKTG----KEAQLCIAYTTSP---VHTLNYY 165 (468)
T ss_pred cCccCCcchHHHHHHHHHHHCCCCEEEEcccCCC---HHHHHHHHH-HHHHcC----CEEEEEEEEEeCC---cCcHHHH
Confidence 3455666677788899999999998866665443 112334443 333321 1111333333322 3366667
Q ss_pred HHHHHHHHhhhCCCcEEEEEeccCCCCCCChhHHHHHHHHHHHHHcCcEeEEeecCCChHHHHH--HHHHHHhcCCCcee
Q 017700 145 VNACRASLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKGLVRAVGVSNYGPNQLVK--IHDYLTARGVPLCS 222 (367)
Q Consensus 145 ~~~l~~sL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~l~~--~~~~~~~~~~~~~~ 222 (367)
.+.+++ +..+|.|. +.|-....-..| .++.+.+..+++... .-||+=.|+...+.. .+..++ .| .+.
T Consensus 166 ~~~a~~-l~~~Gad~---I~IkDtaG~l~P---~~v~~Lv~alk~~~~-~pi~~H~Hnt~GlA~An~laAie-AG--ad~ 234 (468)
T PRK12581 166 LSLVKE-LVEMGADS---ICIKDMAGILTP---KAAKELVSGIKAMTN-LPLIVHTHATSGISQMTYLAAVE-AG--ADR 234 (468)
T ss_pred HHHHHH-HHHcCCCE---EEECCCCCCcCH---HHHHHHHHHHHhccC-CeEEEEeCCCCccHHHHHHHHHH-cC--CCE
Confidence 766665 45688654 444422111233 334555555665443 357887776654322 222222 23 344
Q ss_pred EEeeecccccccch---hhHHHHHHHcCC
Q 017700 223 AQVQFSLLSMGENQ---LEIKNICDSLGI 248 (367)
Q Consensus 223 ~q~~~n~~~~~~~~---~~l~~~~~~~gi 248 (367)
+..-.+++-....+ +.++.+++..|+
T Consensus 235 vD~ai~g~g~gagN~~tE~lv~~L~~~g~ 263 (468)
T PRK12581 235 IDTALSPFSEGTSQPATESMYLALKEAGY 263 (468)
T ss_pred EEeeccccCCCcCChhHHHHHHHHHhcCC
Confidence 44455555433321 345555555443
No 298
>PRK00499 rnpA ribonuclease P; Reviewed
Probab=20.95 E-value=4.2e+02 Score=20.87 Aligned_cols=64 Identities=11% Similarity=0.097 Sum_probs=40.2
Q ss_pred CCCcEEEEeeccCCCCCCChHHHHHHHHHHHhhhCC---CcEEEEEeccCCCCCCChhHHHHHHHHHHHHHc
Q 017700 122 VQNNIVIATKFAAYPWRLTPGQFVNACRASLARLQI---EQIGIGQLHWSTANYAPPQELALWNGLVAMYEK 190 (367)
Q Consensus 122 ~R~~v~i~tK~~~~~~~~~~~~i~~~l~~sL~~Lg~---d~iDl~~lH~~~~~~~~~~~~~~~~~L~~l~~~ 190 (367)
.|=-+.|+-|+|.. .....+++.+.+.++.+.. ...|++++-.+... .....++.+.|..|.++
T Consensus 38 ~R~GisVsKKvgkA---V~RNriKR~lRE~~R~~~~~~~~~~d~v~i~r~~~~--~~~~~~l~~~l~~ll~k 104 (114)
T PRK00499 38 FRVGISVSKKVGNA---VVRNRIKRLIRESFRELKDEIKKGYDFVVIARKPAA--ELDYKEIKKSLIHVLKL 104 (114)
T ss_pred cEEEEEEecccCch---hhHhHHHHHHHHHHHHhhhcccCCceEEEEECCCcc--cCCHHHHHHHHHHHHHH
Confidence 45557777777642 2567788888887776532 35799999987533 22334455666665554
No 299
>PLN02289 ribulose-bisphosphate carboxylase small chain
Probab=20.84 E-value=2.6e+02 Score=24.06 Aligned_cols=22 Identities=14% Similarity=0.208 Sum_probs=18.7
Q ss_pred CCCCCHHHHHHHHHHHHHCCCC
Q 017700 67 YQESMDSQLQQTFNLAVENGIN 88 (367)
Q Consensus 67 ~~~~~~~~a~~~l~~A~~~Gi~ 88 (367)
..++++++..+-|++.+..|-.
T Consensus 73 LPpLtdeqI~kQVeYli~~GW~ 94 (176)
T PLN02289 73 LPDLTDEELAKEVDYLLRNKWV 94 (176)
T ss_pred CCCCCHHHHHHHHHHHHhCCCe
Confidence 4568899999999999999964
No 300
>COG1809 (2R)-phospho-3-sulfolactate synthase (PSL synthase, CoM biosynthesis) [Coenzyme transport and metabolism]
Probab=20.78 E-value=6.4e+02 Score=22.88 Aligned_cols=101 Identities=11% Similarity=0.099 Sum_probs=55.9
Q ss_pred HHHHHhhhCCCcEEEEEeccCCCCCCChhHHHHHHHHHHHHHcCcEeEEee----cCCChHHHHHHHHHHHhcCCCceeE
Q 017700 148 CRASLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKGLVRAVGV----SNYGPNQLVKIHDYLTARGVPLCSA 223 (367)
Q Consensus 148 l~~sL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGv----S~~~~~~l~~~~~~~~~~~~~~~~~ 223 (367)
+++.|+--| ||+|.+-+-|-..... ..+.+-+..+.+++.|.--+-|= --++...+++.++.|+..|+...-+
T Consensus 33 ~~D~~~vag-dyVDfvKfgwGT~~Li--~kd~V~ekid~y~e~~i~v~pGGtlfe~a~~~~kvdeyl~e~~~lGfe~iEI 109 (258)
T COG1809 33 VEDVLKVAG-DYVDFVKFGWGTSSLI--DKDQVKEKIDMYKENDIYVFPGGTLFEIAYSQDKVDEYLNEAKELGFEAIEI 109 (258)
T ss_pred HHHHHHhhh-hheeeeeecccccccc--cHHHHHHHHHHHHHcCceecCCceEEEeehhcccHHHHHHHHHHcCccEEEe
Confidence 344455555 8999999998643222 23334556666677666444331 1123345677777777766532222
Q ss_pred EeeecccccccchhhHHHHHHHcCCeEEE
Q 017700 224 QVQFSLLSMGENQLEIKNICDSLGIRLIS 252 (367)
Q Consensus 224 q~~~n~~~~~~~~~~l~~~~~~~gi~v~a 252 (367)
..-+.+++... ..++++.+.+.|.-|.+
T Consensus 110 S~G~i~m~~ee-k~~lIe~a~d~Gf~vls 137 (258)
T COG1809 110 SNGTIPMSTEE-KCRLIERAVDEGFMVLS 137 (258)
T ss_pred cCCeeecchHH-HHHHHHHHHhcccEEeh
Confidence 22233333222 24788888888866544
No 301
>PF00356 LacI: Bacterial regulatory proteins, lacI family; InterPro: IPR000843 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. One such family groups together a range of proteins, including ascG, ccpA, cytR, ebgR, fruR, galR, galS, lacI, malI, opnR, purF, rafR, rbtR and scrR [, ]. Within this family, the HTH motif is situated towards the N terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3KJX_C 1ZAY_A 1VPW_A 2PUA_A 1QQA_A 1PNR_A 1JFT_A 1QP4_A 2PUD_A 1JH9_A ....
Probab=20.75 E-value=99 Score=20.30 Aligned_cols=41 Identities=22% Similarity=0.310 Sum_probs=24.6
Q ss_pred HHHHHHHhCCCHHHHHHHHHHcCCCeeecCCCCHHHHHHHHhccC
Q 017700 293 LKEIAERRGKTIPQVAINWCICKGTIPIPGVKSVKQVEENLGALG 337 (367)
Q Consensus 293 l~~la~~~g~t~~qlal~~~l~~~~~vi~g~~~~e~l~enl~a~~ 337 (367)
|+++|+..|+|++.+.. +|..+ .-+...+.+++.+.++.++
T Consensus 2 i~dIA~~agvS~~TVSr--~ln~~--~~vs~~tr~rI~~~a~~lg 42 (46)
T PF00356_consen 2 IKDIAREAGVSKSTVSR--VLNGP--PRVSEETRERILEAAEELG 42 (46)
T ss_dssp HHHHHHHHTSSHHHHHH--HHTTC--SSSTHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCcCHHHHHH--HHhCC--CCCCHHHHHHHHHHHHHHC
Confidence 67899999999988654 33333 2333344555555555444
No 302
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=20.63 E-value=8.6e+02 Score=24.31 Aligned_cols=73 Identities=15% Similarity=0.114 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHcC-cEeEEeec--CC--ChHHHHHHHHHHHhcCCCceeEEeeecccccccchhhHHHHHHHcCCeEE
Q 017700 177 ELALWNGLVAMYEKG-LVRAVGVS--NY--GPNQLVKIHDYLTARGVPLCSAQVQFSLLSMGENQLEIKNICDSLGIRLI 251 (367)
Q Consensus 177 ~~~~~~~L~~l~~~G-~ir~iGvS--~~--~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~v~ 251 (367)
.+.+++.++.+++.. .++.+-+. ++ +...+.++.+.....++.+.+ +...+ . ..++++..++.|+..+
T Consensus 229 ~e~V~~Ei~~~~~~~~~~~~i~f~Dd~f~~~~~~~~~l~~~l~~~~i~~~~-~~~~~-----~-~~e~l~~l~~aG~~~v 301 (472)
T TIGR03471 229 AESVIEEVKYALENFPEVREFFFDDDTFTDDKPRAEEIARKLGPLGVTWSC-NARAN-----V-DYETLKVMKENGLRLL 301 (472)
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHhhcCceEEE-EecCC-----C-CHHHHHHHHHcCCCEE
Confidence 456888888888763 45555443 33 234455555554444433322 12211 1 2378888888887766
Q ss_pred EecCC
Q 017700 252 SYSPL 256 (367)
Q Consensus 252 a~~pl 256 (367)
..+.-
T Consensus 302 ~iGiE 306 (472)
T TIGR03471 302 LVGYE 306 (472)
T ss_pred EEcCC
Confidence 55443
No 303
>PRK12410 glutamylglutaminyl-tRNA synthetase; Provisional
Probab=20.53 E-value=4.2e+02 Score=26.52 Aligned_cols=67 Identities=6% Similarity=-0.124 Sum_probs=44.1
Q ss_pred ChHHHHHHHHHHHhhhCCCcEEEEEeccCCCCCCChhHHHHHHHHHHHHHcCcEeEEeecCCChHHHHHHHHHHHhcC
Q 017700 140 TPGQFVNACRASLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKGLVRAVGVSNYGPNQLVKIHDYLTARG 217 (367)
Q Consensus 140 ~~~~i~~~l~~sL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~ 217 (367)
+..+...++.++|+.||.++ |= ........+-..+.+++|.++|++ + .+..+.+++++..+.....+
T Consensus 46 ~~~e~~~~I~~~L~WlGl~w-De-------~y~QSeR~~~Y~~~a~~Li~~G~A--Y-~C~cs~eel~~~r~~~~~~g 112 (433)
T PRK12410 46 NIEGKDKEILEILNLFGISW-DK-------LVYQSENLKFHRQMAEKLLSEKKA--F-ACFCSEEELEAKKEKAKNEK 112 (433)
T ss_pred CChHHHHHHHHHHHHcCCCC-CC-------CeehhccHHHHHHHHHHHHHcCCe--e-eecCCHHHHHHHHHHHhhcC
Confidence 45677789999999999876 41 111222234466889999999994 3 34457777877766544333
No 304
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=20.52 E-value=1.7e+02 Score=32.79 Aligned_cols=48 Identities=10% Similarity=-0.063 Sum_probs=38.2
Q ss_pred cEEEEEeccCCCCCCChhHHHHHHHHHHHHHcCcEeEEeecCCChHHHHH
Q 017700 159 QIGIGQLHWSTANYAPPQELALWNGLVAMYEKGLVRAVGVSNYGPNQLVK 208 (367)
Q Consensus 159 ~iDl~~lH~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~l~~ 208 (367)
.+|+++|..|....++.....+++.|..|.+.|+ .|||.+|..+....
T Consensus 978 ~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~~g~--~i~iisH~~~~~~~ 1025 (1042)
T TIGR00618 978 VLDSLFIDEGFGSLDEDSLDRAIGILDAIREGSK--MIGIISHVPEFRER 1025 (1042)
T ss_pred CCCeEEecCCCCCCCHHHHHHHHHHHHHHHhCCC--EEEEEeCcHHHHHh
Confidence 6899999988666566666778999999998886 69999988765444
No 305
>TIGR01060 eno phosphopyruvate hydratase. Alternate name: enolase
Probab=20.52 E-value=8.4e+02 Score=24.18 Aligned_cols=96 Identities=11% Similarity=0.121 Sum_probs=53.3
Q ss_pred ChHHHHHHHHHHHhhhCCCcEEEEEeccCCCCCCChhHHHHHHHHHHHHHcC--cEeEEeecC--CChHHHHHHHHHHHh
Q 017700 140 TPGQFVNACRASLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEKG--LVRAVGVSN--YGPNQLVKIHDYLTA 215 (367)
Q Consensus 140 ~~~~i~~~l~~sL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~~~~L~~l~~~G--~ir~iGvS~--~~~~~l~~~~~~~~~ 215 (367)
+.++..+-+++.++.+ ++.++-.|-+ .. -|+.+.+|.++- .+.-.|=-. .+...+..+++.
T Consensus 263 s~~eai~~~~~lle~~-----~i~~iEdPl~----~~---D~~~~~~L~~~~~~~ipI~gDE~~~t~~~~~~~~i~~--- 327 (425)
T TIGR01060 263 TSEEMIEYYKELVEKY-----PIVSIEDGLS----EE---DWEGWAELTKELGDKVQIVGDDLFVTNTEILREGIEM--- 327 (425)
T ss_pred CHHHHHHHHHHHHhcC-----CcEEEEcCCC----cc---cHHHHHHHHHhcCCCCeEEeCCCcccCHHHHHHHHHh---
Confidence 3444444444444443 4566664421 11 266777776654 444333222 246667766654
Q ss_pred cCCCceeEEeeecccccccchhhHHHHHHHcCCeEEE
Q 017700 216 RGVPLCSAQVQFSLLSMGENQLEIKNICDSLGIRLIS 252 (367)
Q Consensus 216 ~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~v~a 252 (367)
-..+++|+..+-.---.+-.++...|+.+|+.++.
T Consensus 328 --~a~d~v~ik~~~iGGItea~~ia~lA~~~Gi~~vv 362 (425)
T TIGR01060 328 --GVANSILIKPNQIGTLTETLDAVELAKKAGYTAVI 362 (425)
T ss_pred --CCCCEEEecccccCCHHHHHHHHHHHHHcCCcEEE
Confidence 34677777776543222334788999999998554
No 306
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=20.44 E-value=5.8e+02 Score=22.95 Aligned_cols=40 Identities=5% Similarity=0.180 Sum_probs=30.2
Q ss_pred CCHHHHHHHHHHHHHCCCCEEeCCCCcCCCCCCChHHHHHHHHHhh
Q 017700 70 SMDSQLQQTFNLAVENGINLFDTADSYGTGRLNGKSEKLLGKFISE 115 (367)
Q Consensus 70 ~~~~~a~~~l~~A~~~Gi~~~DTA~~Yg~~~~~g~sE~~lG~al~~ 115 (367)
.+.+++.++.+..++.||+.++..-.=.+ +.+.+.+..+.
T Consensus 24 ~~~~~a~~~~~al~~gGi~~iEiT~~tp~------a~~~i~~l~~~ 63 (222)
T PRK07114 24 ADVEVAKKVIKACYDGGARVFEFTNRGDF------AHEVFAELVKY 63 (222)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeCCCCc------HHHHHHHHHHH
Confidence 45689999999999999999997754433 67777554433
No 307
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=20.33 E-value=1.7e+02 Score=32.17 Aligned_cols=56 Identities=14% Similarity=0.015 Sum_probs=43.2
Q ss_pred HHHHHHhhhCCCc--EEEEEeccCCCCCCChhHHHHHHHHHHHHHcCcEeEEeecCCChH
Q 017700 147 ACRASLARLQIEQ--IGIGQLHWSTANYAPPQELALWNGLVAMYEKGLVRAVGVSNYGPN 204 (367)
Q Consensus 147 ~l~~sL~~Lg~d~--iDl~~lH~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~ 204 (367)
++.-+|..+-..+ +|+++|.-|....++...+.++++|+.+... ++-|||-+|..+
T Consensus 827 alrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~~--~~qiiIISH~ee 884 (908)
T COG0419 827 ALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSD--GRQIIIISHVEE 884 (908)
T ss_pred HHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHhc--CCeEEEEeChHH
Confidence 4455666665566 9999999987666666667789999999998 779999888544
No 308
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=20.24 E-value=5.5e+02 Score=25.35 Aligned_cols=44 Identities=11% Similarity=0.082 Sum_probs=19.8
Q ss_pred CceeEEeeecccccccchhhHHHHHHHcCCeEEEecCCCCcccc
Q 017700 219 PLCSAQVQFSLLSMGENQLEIKNICDSLGIRLISYSPLGLGMLT 262 (367)
Q Consensus 219 ~~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~v~a~~pl~~G~L~ 262 (367)
+..+++.+=||.-+-.+-..+.+.|+++|+.++.-.+++.+.+.
T Consensus 151 k~v~lEtPsNP~l~v~DI~~i~~~A~~~g~~vvVDNTfatP~~q 194 (396)
T COG0626 151 KLVFLETPSNPLLEVPDIPAIARLAKAYGALVVVDNTFATPVLQ 194 (396)
T ss_pred eEEEEeCCCCcccccccHHHHHHHHHhcCCEEEEECCccccccc
Confidence 34444444444433332234455555555444544544444443
No 309
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=20.24 E-value=6.2e+02 Score=22.51 Aligned_cols=161 Identities=9% Similarity=0.066 Sum_probs=91.8
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEeCCCCcCCCCCCChHHHHHHHHHhhCCCCCCCCCcEEEEeeccCCCCCCChHHHHHHH
Q 017700 69 ESMDSQLQQTFNLAVENGINLFDTADSYGTGRLNGKSEKLLGKFISEIPGQKQVQNNIVIATKFAAYPWRLTPGQFVNAC 148 (367)
Q Consensus 69 ~~~~~~a~~~l~~A~~~Gi~~~DTA~~Yg~~~~~g~sE~~lG~al~~~~~~~~~R~~v~i~tK~~~~~~~~~~~~i~~~l 148 (367)
..+.++..++++.|.+.|+.-+=..+.|- ....+.|+. .++-|+|=++........+.-...+
T Consensus 14 ~~t~~~i~~lc~~A~~~~~~avcv~p~~v---------~~a~~~l~~--------~~v~v~tVigFP~G~~~~~~K~~E~ 76 (211)
T TIGR00126 14 DTTEEDIITLCAQAKTYKFAAVCVNPSYV---------PLAKELLKG--------TEVRICTVVGFPLGASTTDVKLYET 76 (211)
T ss_pred CCCHHHHHHHHHHHHhhCCcEEEeCHHHH---------HHHHHHcCC--------CCCeEEEEeCCCCCCCcHHHHHHHH
Confidence 35678999999999999987776655542 233344432 3578888886543333444445556
Q ss_pred HHHHhhhCCCcEEEEEeccCCCCCCChhHHHHHHHHHHHHHc--CcE-eEE-eecCCChHHHHHHHHHHHhcCCCceeEE
Q 017700 149 RASLARLQIEQIGIGQLHWSTANYAPPQELALWNGLVAMYEK--GLV-RAV-GVSNYGPNQLVKIHDYLTARGVPLCSAQ 224 (367)
Q Consensus 149 ~~sL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~~~~L~~l~~~--G~i-r~i-GvS~~~~~~l~~~~~~~~~~~~~~~~~q 224 (367)
++.++ +|.|-||+++-...- ..-....+.+.+.+.++. |+. +-| -..-.+.+++..+.+.+...|. +++.
T Consensus 77 ~~Av~-~GAdEiDvv~n~g~l---~~g~~~~v~~ei~~i~~~~~g~~lKvIlE~~~L~~~ei~~a~~ia~eaGA--DfvK 150 (211)
T TIGR00126 77 KEAIK-YGADEVDMVINIGAL---KDGNEEVVYDDIRAVVEACAGVLLKVIIETGLLTDEEIRKACEICIDAGA--DFVK 150 (211)
T ss_pred HHHHH-cCCCEEEeecchHhh---hCCcHHHHHHHHHHHHHHcCCCeEEEEEecCCCCHHHHHHHHHHHHHhCC--CEEE
Confidence 66554 799999988765321 111234466777777764 542 332 1122344667777777766655 4455
Q ss_pred ee--ecccccccchhhHHHHHHHcCCeEEE
Q 017700 225 VQ--FSLLSMGENQLEIKNICDSLGIRLIS 252 (367)
Q Consensus 225 ~~--~n~~~~~~~~~~l~~~~~~~gi~v~a 252 (367)
.. |..-.-..++-.++...-...++|-+
T Consensus 151 TsTGf~~~gat~~dv~~m~~~v~~~v~IKa 180 (211)
T TIGR00126 151 TSTGFGAGGATVEDVRLMRNTVGDTIGVKA 180 (211)
T ss_pred eCCCCCCCCCCHHHHHHHHHHhccCCeEEE
Confidence 55 76433233322333332233566655
No 310
>PRK01492 rnpA ribonuclease P; Reviewed
Probab=20.16 E-value=4.6e+02 Score=20.95 Aligned_cols=61 Identities=8% Similarity=-0.007 Sum_probs=39.6
Q ss_pred CCcEEEEeeccCCCCCCChHHHHHHHHHHHhhhCCC------cEEEEEeccCCCCCCChhHHHHHHHHHHH
Q 017700 123 QNNIVIATKFAAYPWRLTPGQFVNACRASLARLQIE------QIGIGQLHWSTANYAPPQELALWNGLVAM 187 (367)
Q Consensus 123 R~~v~i~tK~~~~~~~~~~~~i~~~l~~sL~~Lg~d------~iDl~~lH~~~~~~~~~~~~~~~~~L~~l 187 (367)
|=-+.|+-|++.. ...+..+++.+.++++.+..+ -.|++++-.+... .....++.+.|+.|
T Consensus 47 RlG~sVSKKv~~k--AV~RNRiKR~lRE~fR~~~~~~~l~~~g~DiVviaR~~~~--~~~~~~l~~~l~~l 113 (118)
T PRK01492 47 FLGIKVSRKLNKK--AVVRNKIKRRIRHLIRIIVSDSSFKAIKFAMIIIPRKGFE--EINFSHLNYELSKI 113 (118)
T ss_pred eEEEEEecccCCc--hhhHHHHHHHHHHHHHHhCcccccCCCCceEEEEECCCcc--cCCHHHHHHHHHHH
Confidence 5567888886542 125778888888888887542 5799999987432 23333455555544
Done!